Query 004590
Match_columns 743
No_of_seqs 222 out of 1219
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0443 Actin regulatory prote 100.0 2E-177 5E-182 1456.8 67.1 718 1-736 1-732 (827)
2 KOG0444 Cytoskeletal regulator 100.0 4E-107 9E-112 871.8 19.8 686 13-721 495-1253(1255)
3 KOG0445 Actin regulatory prote 100.0 1.2E-78 2.7E-83 653.0 24.1 528 138-719 223-837 (919)
4 KOG0443 Actin regulatory prote 100.0 1E-68 2.3E-73 593.2 34.9 320 12-350 395-720 (827)
5 KOG0444 Cytoskeletal regulator 100.0 8.1E-46 1.8E-50 399.3 18.5 317 389-719 501-836 (1255)
6 KOG0445 Actin regulatory prote 100.0 1.8E-42 3.8E-47 374.0 15.4 290 19-350 523-837 (919)
7 smart00262 GEL Gelsolin homolo 99.7 1.5E-16 3.3E-21 139.1 11.2 88 141-233 2-89 (90)
8 smart00262 GEL Gelsolin homolo 99.7 4.6E-16 1E-20 136.0 11.0 77 269-346 14-90 (90)
9 PF00626 Gelsolin: Gelsolin re 99.4 4E-13 8.7E-18 113.3 6.1 72 268-340 5-76 (76)
10 PF00626 Gelsolin: Gelsolin re 99.4 9.1E-13 2E-17 111.2 7.1 74 150-228 3-76 (76)
11 PTZ00395 Sec24-related protein 94.9 0.088 1.9E-06 64.7 9.1 34 271-304 1434-1467(1560)
12 KOG1984 Vesicle coat complex C 94.1 0.25 5.4E-06 58.1 10.0 88 616-708 856-973 (1007)
13 PTZ00395 Sec24-related protein 93.9 0.17 3.6E-06 62.4 8.4 54 617-670 1403-1467(1560)
14 COG5028 Vesicle coat complex C 93.7 0.12 2.6E-06 59.9 6.3 116 617-735 708-856 (861)
15 COG5028 Vesicle coat complex C 93.2 0.15 3.2E-06 59.3 6.1 73 265-337 730-828 (861)
16 KOG1984 Vesicle coat complex C 92.2 0.39 8.4E-06 56.6 7.8 67 271-338 881-973 (1007)
17 KOG1985 Vesicle coat complex C 89.0 0.3 6.6E-06 57.2 3.2 32 271-302 763-794 (887)
18 KOG1985 Vesicle coat complex C 81.7 1 2.3E-05 53.0 2.9 52 617-668 734-794 (887)
19 PLN00162 transport protein sec 77.7 9.4 0.0002 46.5 9.4 84 253-339 620-717 (761)
20 PLN00162 transport protein sec 69.0 13 0.00028 45.3 7.8 87 617-710 619-718 (761)
21 KOG3655 Drebrins and related a 50.8 27 0.00059 39.1 5.5 110 6-115 11-134 (484)
22 smart00102 ADF Actin depolymer 44.1 92 0.002 28.5 7.3 78 19-96 16-106 (127)
23 PF00241 Cofilin_ADF: Cofilin/ 40.3 87 0.0019 28.5 6.5 88 19-109 16-116 (127)
24 KOG3655 Drebrins and related a 34.8 1E+02 0.0023 34.7 6.9 77 409-485 55-135 (484)
25 PLN03216 actin depolymerizing 34.2 3.5E+02 0.0076 25.5 9.6 91 16-109 26-130 (141)
26 COG5014 Predicted Fe-S oxidore 32.3 44 0.00096 32.5 3.1 78 517-606 93-170 (228)
27 cd00013 ADF Actin depolymerisa 29.4 1.9E+02 0.0042 26.3 7.0 76 19-95 22-111 (132)
28 PF00241 Cofilin_ADF: Cofilin/ 28.7 2.6E+02 0.0057 25.3 7.7 53 411-463 48-104 (127)
29 smart00102 ADF Actin depolymer 22.2 3.5E+02 0.0075 24.7 7.2 52 411-463 48-104 (127)
No 1
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=2.2e-177 Score=1456.79 Aligned_cols=718 Identities=48% Similarity=0.861 Sum_probs=666.8
Q ss_pred CCCCcccCCchhccCCccccEEEEEEECCEEeecCCCCCCccccCCeEEEEeeeecCCCCCceeEEEEccCCCChhhHHH
Q 004590 1 MSLHSKDIDSAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGNDVNEEDSTL 80 (743)
Q Consensus 1 ~~~~~~~~~~~~~~~g~~~~~~vWrIe~~~~~~v~~~~~G~Fy~gd~YIvl~t~~~~~~~~~~~i~~W~G~~ss~de~g~ 80 (743)
|++.|.++|++|+++|+++|++|||||+|.+++||++.||+||+|||||||+|...+++.+.|+||||+|+++|+||+|+
T Consensus 1 ~s~~~~~ld~af~~ag~~pGl~IWRIe~f~lv~VP~s~~G~Fy~GdaYIvL~t~~~k~~~l~~DIHyWLGkd~S~dE~g~ 80 (827)
T KOG0443|consen 1 MSMSMLDLDPAFQGAGQKPGLEIWRIENFELVPVPKSSHGKFYTGDAYIVLKTTLKKNGSLSYDIHYWLGKDSSQDEAGA 80 (827)
T ss_pred CCccccccCHHHHhcccCCceEEEEeccCeeeecchhccCceecCceEEEEehhhccCCccceeEEEEecCccchhhhcc
Confidence 88999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccEEEeecCCCChHHHhccCCcEEEccCcccCCCCCCCCcccceEEEEeeCCceEEEEEeccccC
Q 004590 81 VSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGKSNGETYKISMLTCKGDHVVRVKEVPFSRS 160 (743)
Q Consensus 81 aa~~a~eLd~~l~g~~vq~Re~Qg~Es~~Fl~~F~~~ii~~~Gg~~s~f~~~~~~~~~~rL~~vkG~~~v~~~eV~~s~s 160 (743)
||++|+|||+.|||.||||||+||+||+.||+|||++|||.+||++|||+||+...+.+|||||||+|++|+.|||++|+
T Consensus 81 aAiktveLD~~Lgg~~vQhREVQg~ES~~FLsYFK~gi~~~~GGv~Sg~khv~~~~~~~rL~~~KGkr~vr~~eV~~~~s 160 (827)
T KOG0443|consen 81 AAIKTVELDDYLGGRAVQHREVQGHESEKFLSYFKPGIIYQEGGVASGFKHVETEEYQVRLFHCKGKRNVRVKEVPFSWS 160 (827)
T ss_pred eeeeeEehhhhhCCCcceeehhcccchHHHHhhccCCceecccccccCcccccccceeeEEEEEccceeEEEEEEEeehh
Confidence 99999999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred cccCCCeEEEECCCEEEEEeCCCCCHHHHHHHHHHHHHhhhccCCCceeEEEEcCCccCCCCChhhHHHHhCCCCC-CCC
Q 004590 161 SLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAP-IPR 239 (743)
Q Consensus 161 SLns~d~FIL~~~~~iyvW~G~~s~~~ek~ka~~~a~~i~~~~~~g~~~v~~v~eg~~~~~~e~~eFw~~lgg~~~-~~~ 239 (743)
|||++||||||+++.||+|+|+.||+.||+||+++|+.|++.+|.|+|+|.+||+|+.+.+++..+||..+||..+ ++.
T Consensus 161 S~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~g~~~~~~~ 240 (827)
T KOG0443|consen 161 SLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVVDDGKEAADSDLGEFWGFVLGFAPALPK 240 (827)
T ss_pred hcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEecCcccccCchHHHHHHhhcCcCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999987777888999999998877 555
Q ss_pred CCCCcCCCCCCCCCcEEEEEe-CCCCeE--EeccCCCcccccCCCceEEEeCC-CeEEEEeccCCCHHHHHHHHHHHHHH
Q 004590 240 DSPSAFQQQPDTPSTTFFWIN-LQGKLC--QIAANSLNKDMLEKDKCYMLDCV-NEVFVWTGRNTSITERRISISASEDF 315 (743)
Q Consensus 240 ~~~~~~~~~~~~~~~rLy~~~-~~G~~~--~~e~~~~~q~~L~~~~v~ilD~~-~eiyvW~G~~a~~~er~~a~~~A~~y 315 (743)
....++++......++||+++ ++|.+. .+...||+|++|++++||||||| .+||||+|+.|+.+||+.||..|++|
T Consensus 241 ~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~AeeF 320 (827)
T KOG0443|consen 241 KSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDERKAAMSSAEEF 320 (827)
T ss_pred CCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 555445555667789999995 567654 33446799999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCCCCeEEEecCCccchhhhhccccCCCCCCCcccccchhhhhhhhhhccCCCCCC---Ccc--CCCCccccCCc
Q 004590 316 LRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEPKLYDEGREKVAAIFKQQGHDVKEL---PEE--DFEPYVNCRGI 390 (743)
Q Consensus 316 ~~~~~r~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~~~~~~~~~k~a~~~~~~~~d~~~l---p~~--~~~~~~~~~g~ 390 (743)
+++.+||++|.|++|.||.|++.||++|.+|++...+.....+++++|.+++.+++|+..| |.+ +.+++||++|+
T Consensus 321 lk~k~yP~~TqV~rv~EG~Esa~FKq~F~~W~~~~~t~~~~~~rG~va~l~q~~~~Dv~~L~~~~~~aa~~~mvddg~G~ 400 (827)
T KOG0443|consen 321 LKKKKYPPNTQVVRVLEGAESAPFKQLFDSWPDKDQTNGKEEGRGKVAALLQVKGFDVTGLHKSPKMAAQPQMVDDGSGK 400 (827)
T ss_pred HHhccCCCCceEEEecCCCcchhHHHHHhhCccccccccccccccccceeeeecccchhhcccCccccccccceecCCCc
Confidence 9999999999999999999999999999999998777666778899999888888999999 333 44578999999
Q ss_pred EEEEEEeCCceeecCCccccceecccEEEEEeecCC-CCcceEEEEEEccCCCCHHHHHHHHHHHHHHHHhcCCCceEEe
Q 004590 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYPG-NGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVMAQ 469 (743)
Q Consensus 391 l~vwri~~~~~~~vp~~~~G~Fys~d~Yiv~~ty~~-~~~~~~~iy~W~G~~ss~~e~~~aa~~~~~l~~~~~~~~~q~r 469 (743)
++||||++..+++||..++|+||+||||||+|+|+. +.+..++||.|+|++|+.+++.+|+.+|++|++.++|.|+|+|
T Consensus 401 ~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~kg~~vq~r 480 (827)
T KOG0443|consen 401 LQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVESLKGVPVQVR 480 (827)
T ss_pred EEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhhcCCceeEEE
Confidence 999999999999999999999999999999999985 4589999999999999999999999999999999999999999
Q ss_pred eeccCCcHHHHhhccc-EEEEEcccccCcceeeeecCcccccccccceEEEEEEecCCCceEEEEeccCCCccCCCceEE
Q 004590 470 VHQDMEPVQFFLIFQS-LIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYI 548 (743)
Q Consensus 470 v~Qg~Ep~~Fl~lF~~-~~i~~gg~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~g~~~~~~~~~ev~~~~~sL~s~d~fi 548 (743)
+.||+||+||++||+| |+|++||++. .+++++..+++||||+|+.+.|++|+||++.++||||+||||
T Consensus 481 v~~GkEP~hF~~iFqgkliifkgg~s~-----------~g~~~~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fv 549 (827)
T KOG0443|consen 481 IYEGKEPPHFLAIFQGKLIIFKGGTSE-----------EGNTYPAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFV 549 (827)
T ss_pred eecCCCChHHHHhhCCceEEEecCcCC-----------CCCccCCCceEEEEEeccCcccceeEeeccccccccccceEE
Confidence 9999999999999999 9999999863 134566678999999999999999999999999999999999
Q ss_pred EEcCCEEEEEECCCCCHHHHHHHHHHHHHhCCCcceEEeecCCChhhhHHhcCCCCCCCCccc-ccCCCCCCceEEEEcc
Q 004590 549 LQNGASVFTWIGNLSSSRDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEYPREKE-IKGFIEDPHLFTCTLT 627 (743)
Q Consensus 549 l~~~~~vyvW~G~~s~~~e~~~A~~~a~~l~~~~~v~~v~EG~E~~eFw~~Lgg~~~y~~~~~-~~~~~~~prLf~~s~~ 627 (743)
|.++.++|+|+|++|+.+||++|..++..|.. .+...+.||+||++||++|||+.+|++.+. .....+.||||.|++.
T Consensus 550 L~t~s~~ylW~G~gss~~e~e~A~~v~~~l~~-~~~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~ 628 (827)
T KOG0443|consen 550 LKTGSSVYLWCGKGSSGDEREMAKRVLDLLKR-CQSTAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNK 628 (827)
T ss_pred EecCCeEEEEeCCCCCHHHHHHHHHHHHHHhc-CChhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEec
Confidence 99999999999999999999999999999962 455678999999999999999999998873 3456788999999999
Q ss_pred CCceEEeeecccccCCCCCCCEEEEeCCCeEEEEecCCCCHHHHHHHHHHHHHHHhhcccccCCCCCCcEEEccCCCCCh
Q 004590 628 EGDLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEGLSLETPIYVVTEGHEPP 707 (743)
Q Consensus 628 ~G~~~v~ei~~f~Q~dL~~~~v~iLD~~~~vyVWiG~~as~~ek~~a~~~A~~Y~~~~~~~~~r~~~~pi~~V~~G~Ep~ 707 (743)
+|.|.++||++|.|+||.++|||||||+++||||||++++++||..|+.+|++|++++ ...||++.+||++|.||+||+
T Consensus 629 ~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~-~p~gr~~~TPI~vV~qG~EPp 707 (827)
T KOG0443|consen 629 TGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETD-LPEGRDPRTPIYVVKQGHEPP 707 (827)
T ss_pred CCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhcc-CcccCCCCCceEEecCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998 224899999999999999999
Q ss_pred hchhcc-ccCccccccCCCcHHHHHHHhcC
Q 004590 708 FFTCFF-AWDPLKAKMHGNSFERKLAILKG 736 (743)
Q Consensus 708 ~F~~~F-~W~~~~~~~~~~~~~~~~~~~~~ 736 (743)
.||++| +||+.+ .+|+.+++.|.+
T Consensus 708 ~Ftg~F~~WD~~k-----wS~~~~~~~l~~ 732 (827)
T KOG0443|consen 708 FFTGFFLSWDPSK-----WSFQKKLKDLKN 732 (827)
T ss_pred hhhccccccCCcc-----cccchHHHHHhc
Confidence 999999 899998 566777776643
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=4e-107 Score=871.83 Aligned_cols=686 Identities=24% Similarity=0.457 Sum_probs=573.9
Q ss_pred ccCCccccEEEEEEECCEEeecCCCCCCccccCCeEEEEeeeecCCCCCceeEEEEccCCCChhhHHHHHHHHHHHHHHh
Q 004590 13 EGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGNDVNEEDSTLVSDKALELDAAL 92 (743)
Q Consensus 13 ~~~g~~~~~~vWrIe~~~~~~v~~~~~G~Fy~gd~YIvl~t~~~~~~~~~~~i~~W~G~~ss~de~g~aa~~a~eLd~~l 92 (743)
+++|+.+|+.||.||||-+..+++..||+||++||||||.|+...+|.++|.||||+|.++|.|...++|++||.|.++|
T Consensus 495 eDvGqlpGltiWeIENF~P~~~eEafHGkFYeaDcYiVLKT~~ddsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~L 574 (1255)
T KOG0444|consen 495 EDVGQLPGLTIWEIENFYPSIMEEAFHGKFYEADCYIVLKTTRDDSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHL 574 (1255)
T ss_pred cccCCCCCceEEeehhhhhHHHHHHhccceecccEEEEEEeecccccccceeEEEEecccccccchhhhHHHhhhhhhhh
Confidence 38999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCCccEEEeecCCCChHHHhccCCcEEEccCc-ccCCCCCCCCcccceEEEEeeCC-ceEEEEEeccccCcccCCCeEEE
Q 004590 93 GSCTVQYREVQGQETEKFLSYFRPCIIPLDGK-YSLRSGKSNGETYKISMLTCKGD-HVVRVKEVPFSRSSLNHNDVFIV 170 (743)
Q Consensus 93 ~g~~vq~Re~Qg~Es~~Fl~~F~~~ii~~~Gg-~~s~f~~~~~~~~~~rL~~vkG~-~~v~~~eV~~s~sSLns~d~FIL 170 (743)
|..|..+||.||+||.+||++|+..|+|.+|| .+|||..++...+.+|||++.+. ..|.+..||++..||..+.||+|
T Consensus 575 gA~CRTvREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~E~~~h~TRlYrv~~~g~~i~lEPVpl~~tSLDPRf~FlL 654 (1255)
T KOG0444|consen 575 GATCRTVREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTTEKPAHLTRLYRVGVNGTAIELEPVPLSVTSLDPRFCFLL 654 (1255)
T ss_pred CchhhhhHHhhCccHHHHHHHhcceeEEEecCceecceeeecchHHhhhhheeccccceeEeeccCccccccCcceEEEE
Confidence 99999999999999999999999999999999 78999988877788999999877 57899999999999999999999
Q ss_pred ECCCEEEEEeCCCCCHHHHHHHHHHHHHhhhccCCCceeEEEEcCCccCCCCChhhHHHHhCCCCCCCCCCCCcC-CCCC
Q 004590 171 DTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAF-QQQP 249 (743)
Q Consensus 171 ~~~~~iyvW~G~~s~~~ek~ka~~~a~~i~~~~~~g~~~v~~v~eg~~~~~~e~~eFw~~lgg~~~~~~~~~~~~-~~~~ 249 (743)
|.|.+||+|.|-+|...--.||+.+|.+|.+.+|.|+|+|...-+|. |+.|||++|||.++-+....... .+.+
T Consensus 655 D~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~-----e~pEFWqaLgg~p~e~~~~ikeHVPEdf 729 (1255)
T KOG0444|consen 655 DAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGR-----EPPEFWQALGGNPDEPQGAIKEHVPEDF 729 (1255)
T ss_pred eCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcC-----CCHHHHHHhCCCCcccccchhhcCCccc
Confidence 99999999999999999999999999999999999999999999985 89999999999875543222111 2234
Q ss_pred CCCCcEEEEEe-CCCCeEE--ec---cCCCcccccCCCceEEEeCCCeEEEEeccCCCHHHHHHHHHHHHHHHHhcCCCC
Q 004590 250 DTPSTTFFWIN-LQGKLCQ--IA---ANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASEDFLRNQGRTT 323 (743)
Q Consensus 250 ~~~~~rLy~~~-~~G~~~~--~e---~~~~~q~~L~~~~v~ilD~~~eiyvW~G~~a~~~er~~a~~~A~~y~~~~~r~~ 323 (743)
.+..|+||+++ .-|.+.. ++ ...+.|++|.+..||||||++.||+|+|++++.-.|.+|.++.+++..+..||.
T Consensus 730 ~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RLvraAa~KL~~EL~~M~dRPd 809 (1255)
T KOG0444|consen 730 VPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRLVRAAAQKLVVELHQMIDRPD 809 (1255)
T ss_pred CCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchHHHHHHHHHHHHHHHhhhcCcc
Confidence 46689999997 4576642 32 245889999999999999999999999999999999999999999999999966
Q ss_pred CCeEEEecCCccchhhhhccccCCCCCCC--cccccch----hhhhhhhh---hccCCCCCC--Cc---c---CC-CCcc
Q 004590 324 GTHLTFLTEGLETTVFRSYFDSWPQIAEP--KLYDEGR----EKVAAIFK---QQGHDVKEL--PE---E---DF-EPYV 385 (743)
Q Consensus 324 ~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~--~~~~~~~----~k~a~~~~---~~~~d~~~l--p~---~---~~-~~~~ 385 (743)
.+.+.++.||.|...|+.+|.+|++..+. +...++. |++....+ +...|...| |. + +. +.+.
T Consensus 810 yA~V~R~~EG~E~q~FrsKFagWDev~~VDyTRta~sV~~~pg~~k~~~~k~~~mraDLaALFlpRQp~MslaEaEqLmE 889 (1255)
T KOG0444|consen 810 YAQVYRETEGEESQMFRSKFAGWDEVVPVDYTRTADSVQRVPGDLKVIVKKDNMMRADLAALFLPRQPSMSLAEAEQLME 889 (1255)
T ss_pred hhheeeccCccHHHHHHHhhCCcceeeeeecccchHHHhhCcchhhHHHhhhhhhHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 69999999999999999999999987442 1111111 11111111 123344433 22 1 21 2334
Q ss_pred ccCC---cEEEEEEeCCceeecCCccccceecccEEEEEeecCC------CC----------------------cceEEE
Q 004590 386 NCRG---ILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYPG------NG----------------------RDENVI 434 (743)
Q Consensus 386 ~~~g---~l~vwri~~~~~~~vp~~~~G~Fys~d~Yiv~~ty~~------~~----------------------~~~~~i 434 (743)
+++. -++-|.+++.+++.+|++++|+||.+||||++|.|.. +| ..+|++
T Consensus 890 ewNyDLe~ME~FVLEgKKFvrLPeeEfG~FYT~dCYVFLCRY~vp~EE~Eeg~ed~~n~~advsks~e~~qPE~dfqCvV 969 (1255)
T KOG0444|consen 890 EWNYDLELMESFVLEGKKFVRLPEEEFGIFYTMDCYVFLCRYAVPPEEDEEGEEDHANPAADVSKSDEDDQPEMDFQCVV 969 (1255)
T ss_pred HhcccHHHHHHHhhcCchhccCCHHHhCeeeccceEEEEEeeecCCCCccccccccCCccccccccccccCCccceeEEE
Confidence 4444 3556899999999999999999999999999999931 00 127999
Q ss_pred EEEccCCCCHHHH-HHHHHHHHHHHHhcCCCceEEeeeccCCcHHHHhhccc-EEEEEcccccCcceeeeecCccccccc
Q 004590 435 YAWFGHESMTEDR-AAAISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQS-LIVFKGGLSTQYKKFIVEEGIVDETYD 512 (743)
Q Consensus 435 y~W~G~~ss~~e~-~~aa~~~~~l~~~~~~~~~q~rv~Qg~Ep~~Fl~lF~~-~~i~~gg~~~~~~~~~~~~~~~~~~~~ 512 (743)
|||||++++...+ ...+.+.......++++...||+.|.+|.+.||+.|++ ++||+|.+.. .. .. .
T Consensus 970 YFWQGR~AsNMGWLtFTF~LQkkFe~~F~~kLEVVRm~QQQEN~KFlSHFKRKFiIhrGkRk~--~~---~~-------G 1037 (1255)
T KOG0444|consen 970 YFWQGRDASNMGWLTFTFQLQKKFEEIFKDKLEVVRMYQQQENHKFLSHFKRKFIIHRGKRKL--TK---NL-------G 1037 (1255)
T ss_pred EEecCCccCccceEEEEEEehhhHHHhcccceeeeeHhhhhhhhHHHHHhhhhheeeccccch--hh---hh-------c
Confidence 9999999998876 34566677778889999999999999999999999997 6667666531 11 11 1
Q ss_pred ccceEEEEEEecCC-CceEEEEeccCCCccCCCceEEEEcC-------CEEEEEECCCCCHHHHHHHHHHHHHhC-CCcc
Q 004590 513 EKKMALFCIQGTSP-CNMQAFQVDRVSTCLNSSYCYILQNG-------ASVFTWIGNLSSSRDHDLLDRMVELIN-PTWQ 583 (743)
Q Consensus 513 ~~~~~L~~v~g~~~-~~~~~~ev~~~~~sL~s~d~fil~~~-------~~vyvW~G~~s~~~e~~~A~~~a~~l~-~~~~ 583 (743)
...+.||++|.+.. -.+|++||++.++.|||.+||||..+ +.+|+|.|+.|++.|+..|..+..... .++.
T Consensus 1038 ~~~pelfq~R~NGsalctR~IQin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp~e~~~a~d~~~~~~d~~~~ 1117 (1255)
T KOG0444|consen 1038 GKWPELFQMRANGSALCTRTIQINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDPREHEFASDLVVRDDDNDFR 1117 (1255)
T ss_pred CCCchheeeecCCccceeeeEEecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCChHHHHHHHHhcCccccchhh
Confidence 24578999998764 47899999999999999999999752 578999999999999999876654332 3456
Q ss_pred eEEeecCCChhhhHHhcCCCCCCCCcccccCCCCCCceEEEEccCCceEEeee-cccccCCCCCCCEEEEeCCCeEEEEe
Q 004590 584 PISVREGSEPEVFWNALGGKSEYPREKEIKGFIEDPHLFTCTLTEGDLKVKEI-YNFTQDDLTTEDILVLDCCREIYVWI 662 (743)
Q Consensus 584 v~~v~EG~E~~eFw~~Lgg~~~y~~~~~~~~~~~~prLf~~s~~~G~~~v~ei-~~f~Q~dL~~~~v~iLD~~~~vyVWi 662 (743)
++.++||+|+.+||..+|++++|..... ...-.|||+|++.+|+|.++|- .+|+|+||..+++||||.|..||.||
T Consensus 1118 ~~~~~egee~e~fw~~~g~~k~ye~d~~---~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~ldng~~v~~w~ 1194 (1255)
T KOG0444|consen 1118 IVEVQEGEENEEFWKVLGGKKKYETDSS---FVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDNGDAVFLWI 1194 (1255)
T ss_pred hhccCCccchHHHhcccCCCCccchhHH---HHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhhcccceeeeee
Confidence 7789999999999999999998876532 2335699999999999998886 59999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcccccCCCCCCc--EEEccCCCCChhchhcc-ccCccccc
Q 004590 663 GCHSDLNSKQQALNIGQKFLETDILVEGLSLETP--IYVVTEGHEPPFFTCFF-AWDPLKAK 721 (743)
Q Consensus 663 G~~as~~ek~~a~~~A~~Y~~~~~~~~~r~~~~p--i~~V~~G~Ep~~F~~~F-~W~~~~~~ 721 (743)
|...+..|-+.+...|+.|....+. ++...| ...+..|.|...|+++| +|...+.+
T Consensus 1195 g~~~s~ie~Kls~~a~Qvy~~~mr~---k~~e~pr~~~l~~~gre~~~F~~cfhaws~~~~~ 1253 (1255)
T KOG0444|consen 1195 GARSSDIEAKLSYQAAQVYHASMRM---KANEKPRKFMLAVRGRESCRFRKCFHAWSKMKEP 1253 (1255)
T ss_pred cceehhHHHHHHHHHHHHHHHhccc---ccccchHHHHHHHhcchhhhhHHHHHHHHHhhcc
Confidence 9999999999999999999987653 233344 46789999999999999 89876644
No 3
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=1.2e-78 Score=653.03 Aligned_cols=528 Identities=24% Similarity=0.458 Sum_probs=424.7
Q ss_pred ceEEEEeeCCceEEEEEeccccCcccCCCeEEEECCCEEEEEeCCCCCHHHHHHHHHHHHHhhhccCCC-ce-eEEEEcC
Q 004590 138 KISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGG-KC-GVATVED 215 (743)
Q Consensus 138 ~~rL~~vkG~~~v~~~eV~~s~sSLns~d~FIL~~~~~iyvW~G~~s~~~ek~ka~~~a~~i~~~~~~g-~~-~v~~v~e 215 (743)
.++|+||||+++|+++.|++..+|||++|||||..+..+|.|.|..||.+||++|.+++..|..+...| ++ .|++|.+
T Consensus 223 ~vMLlqVkGr~hVqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCtAt~ivtit~ 302 (919)
T KOG0445|consen 223 RVMLLQVKGRRHVQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCTATYIVTITE 302 (919)
T ss_pred ceEEEEEcccccceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCceeEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999997665433 33 3556666
Q ss_pred CccCCCCChhhHHHHhCCCCCCCCCCCCcCCCCCCCC---CcEEEEEeCCCCeEEec--cCCCcccccCCCceEEEeCCC
Q 004590 216 GKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQQPDTP---STTFFWINLQGKLCQIA--ANSLNKDMLEKDKCYMLDCVN 290 (743)
Q Consensus 216 g~~~~~~e~~eFw~~lgg~~~~~~~~~~~~~~~~~~~---~~rLy~~~~~G~~~~~e--~~~~~q~~L~~~~v~ilD~~~ 290 (743)
-. ...-....||++||+..++.+....++++.++.. ...+|++. +.++.+.+ ..-++-++|++..|.|+|+|+
T Consensus 303 ~~-~~t~~~~~Fw~llg~qs~~~~~g~a~ede~fE~~iietN~iyr~~-dd~l~p~~~~w~ipk~~~l~p~eVLvFDFGS 380 (919)
T KOG0445|consen 303 IN-THTHAAKDFWKLLGGQSSYQSAGDAKEDELFEAAIIETNCIYRLM-DDKLVPDDDYWKIPKCSLLQPKEVLVFDFGS 380 (919)
T ss_pred cc-hhHHHHHHHHHHhCCccchhhcCCccccchHHHHHHHhhhHHhhc-ccccCccccccccccccccCcceEEEEecCc
Confidence 32 2212256899999998877665555555555433 23455553 34454433 234677999999999999999
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHHHHh-----------------cCCCCCCeEEEecCCccchhhhhccccCCCCCCCc
Q 004590 291 EVFVWTGRNTSITERRISISASEDFLRN-----------------QGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEPK 353 (743)
Q Consensus 291 eiyvW~G~~a~~~er~~a~~~A~~y~~~-----------------~~r~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~~ 353 (743)
|||||.|+.++...|+.|+++|+++++. .|||.|+..-+|+||.|+.+||++|.||++.....
T Consensus 381 EvYVW~Gk~~~~~~~~~A~~lAk~l~~~dy~nc~~npld~~~~~~~gRPeW~i~gkitq~~et~LFKeKFsDWpE~~r~~ 460 (919)
T KOG0445|consen 381 EVYVWHGKEVTLAQRKIAFQLAKHLWNFDYENCDINPLDLIPRKGQGRPEWAIFGKITQHNETILFKEKFSDWPELKRSN 460 (919)
T ss_pred eEEEEcCccCchHHHHHHHHHHHHHhCCCcccCccccccccccccCCCcceeeechhhcchhhhhHHHhhccchHhhhhh
Confidence 9999999999999999999999999763 48988899999999999999999999999865421
Q ss_pred ccccchhhhhhhhhhccCCCC-----CC---Ccc---------------------CCCCccccCCcEEEEEEeCCceeec
Q 004590 354 LYDEGREKVAAIFKQQGHDVK-----EL---PEE---------------------DFEPYVNCRGILKVWRVNGDELSLL 404 (743)
Q Consensus 354 ~~~~~~~k~a~~~~~~~~d~~-----~l---p~~---------------------~~~~~~~~~g~l~vwri~~~~~~~v 404 (743)
-.. .+..+..++....+++ .| |.. +...+|..+..+.+|+|.++....+
T Consensus 461 ~~~--k~~~~~~k~np~~~v~a~~~t~~~~ep~~~~~~iL~~~nlgrg~~l~d~~drr~fdVis~s~d~W~i~ef~~~~~ 538 (919)
T KOG0445|consen 461 EKN--KGELAQHKENPRTDVKAYDVTRMVSEPQTTAGTILDGVNLGRGYGLVDGHDRRQFDVISVSVDVWHILEFDYSRL 538 (919)
T ss_pred ccC--chhhhhhhcCCceeeeehhheecccchhhhHHHHhhhhccCCceeeeecccceeeeeeeecccceeeehhhhhhh
Confidence 111 1111111111111111 11 110 0112344567889999999999999
Q ss_pred CCccccceecccEEEEEeecCC----------------CCcceEEEEEEccCCCCHHHHHHHHHHHHHHHHhcCCCceEE
Q 004590 405 PAAEQMKLFSGDCYIVKYTYPG----------------NGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVMA 468 (743)
Q Consensus 405 p~~~~G~Fys~d~Yiv~~ty~~----------------~~~~~~~iy~W~G~~ss~~e~~~aa~~~~~l~~~~~~~~~q~ 468 (743)
| +.+||||++|||||.|.|.- .|++++++|||||+|||..++|+||++++|||+. +..|+
T Consensus 539 ~-~~~ghF~s~~~YvvrWky~Is~~Vr~~~~g~~~~r~~Gr~rcvyf~WqG~hst~~ekG~~AL~tvElD~e---~gaqv 614 (919)
T KOG0445|consen 539 P-QSIGHFHSGDAYVVRWKYMISTAVRSRQKGEHSVRAAGRERCVYFFWQGRHSTVSEKGTSALMTVELDEE---RGAQV 614 (919)
T ss_pred h-hhhhccccCceEEEEEEEEeehhhhhhhcCccchhhcccceEEEEEEccccCCcccccceeeeeeeeccc---cCcee
Confidence 9 89999999999999999941 3788999999999999999999999999999985 56899
Q ss_pred eeeccCCcHHHHhhccc-EEEEEcccccCcceeeeecCcccccccccceEEEEEEecCCCceEEEEeccCCCccCCCceE
Q 004590 469 QVHQDMEPVQFFLIFQS-LIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCY 547 (743)
Q Consensus 469 rv~Qg~Ep~~Fl~lF~~-~~i~~gg~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~g~~~~~~~~~ev~~~~~sL~s~d~f 547 (743)
||.||+||+.||+||.| |+++.|-.. ...-|||+|+|+.+.++-+.||++..|+|+|+-++
T Consensus 615 rv~qG~Ep~~Fl~lF~g~m~vhsgr~E------------------~~~erlY~v~G~vs~Et~l~Ev~c~~S~LRSr~sm 676 (919)
T KOG0445|consen 615 RVLQGKEPPCFLQLFQGGMVVHSGRRE------------------EEEERLYCVRGEVSVETNLLEVACHCSSLRSRTSM 676 (919)
T ss_pred EeecCCCccHHHHHhcCCeeEEcCchh------------------hchhheeeEecccccchhhhHhhhccccccccceE
Confidence 99999999999999996 666654431 12247999999998899999999999999999999
Q ss_pred EEEcCC--EEEEEECCCCCHHHHHHHHHHHHHhC-------CCcceEEeecCCChhhhHHhcCCCCCCCCcccccCCCCC
Q 004590 548 ILQNGA--SVFTWIGNLSSSRDHDLLDRMVELIN-------PTWQPISVREGSEPEVFWNALGGKSEYPREKEIKGFIED 618 (743)
Q Consensus 548 il~~~~--~vyvW~G~~s~~~e~~~A~~~a~~l~-------~~~~v~~v~EG~E~~eFw~~Lgg~~~y~~~~~~~~~~~~ 618 (743)
|+...+ .+|+|+|..+-.+.|..+..+|+.+. .+..+.+|+||++|..||++||.+. ..+.
T Consensus 677 v~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~Eveegs~~~~~~~alGrkd----------f~~~ 746 (919)
T KOG0445|consen 677 VVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIHEVEEGSEPLGFWDALGRKD----------FNFA 746 (919)
T ss_pred EEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeEeecCCCCchhhhhhccccc----------cccc
Confidence 998764 69999999999999999988887764 2356789999999999999999764 5678
Q ss_pred CceEEEEccCCceEEeee-------cccccCCCCCCCEEEEeCCCeEEEEecCCCCHHHHHHHHHHHHHHHhhcccccCC
Q 004590 619 PHLFTCTLTEGDLKVKEI-------YNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEGL 691 (743)
Q Consensus 619 prLf~~s~~~G~~~v~ei-------~~f~Q~dL~~~~v~iLD~~~~vyVWiG~~as~~ek~~a~~~A~~Y~~~~~~~~~r 691 (743)
||||.++.+. ++|+ ++|+|+||++. ||||.|++||+|. -..+|+.||++|.+|++. +
T Consensus 747 ~RlF~~sS~q----a~els~p~rc~~pFsQ~~Ly~a--fLvD~gdelwLW~----w~s~r~~Aleta~~Ywk~------~ 810 (919)
T KOG0445|consen 747 PRLFILSSSQ----ATELSYPARCPMPFSQEDLYSA--FLVDNGDELWLWQ----WASDRKSALETALQYWKN------L 810 (919)
T ss_pred ceeeeccchh----hhhccCcccCCCcccHHHHhhh--eeeccCCeeEeeh----hhhHHHHHHHHHHHHHhc------c
Confidence 9999988665 4554 69999999984 9999999999999 567899999999999994 2
Q ss_pred CCCCcEEEccCCCCChhchhcc-ccCccc
Q 004590 692 SLETPIYVVTEGHEPPFFTCFF-AWDPLK 719 (743)
Q Consensus 692 ~~~~pi~~V~~G~Ep~~F~~~F-~W~~~~ 719 (743)
. .|-.+|..|.||..||.+| .|....
T Consensus 811 ~--~p~~vV~aGlEPl~Fk~lFp~We~re 837 (919)
T KOG0445|consen 811 K--APSYVVHAGLEPLTFKNLFPSWEHRE 837 (919)
T ss_pred C--CCceEEEcCcChhhhhhhCCCceecc
Confidence 1 5689999999999999999 998653
No 4
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=1e-68 Score=593.20 Aligned_cols=320 Identities=28% Similarity=0.497 Sum_probs=289.4
Q ss_pred hccCCccccEEEEEEECCEEeecCCCCCCccccCCeEEEEeeeecCCCCCceeEEEEccCCCChhhHHHHHHHHHHHHHH
Q 004590 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGNDVNEEDSTLVSDKALELDAA 91 (743)
Q Consensus 12 ~~~~g~~~~~~vWrIe~~~~~~v~~~~~G~Fy~gd~YIvl~t~~~~~~~~~~~i~~W~G~~ss~de~g~aa~~a~eLd~~ 91 (743)
-++.| .++||||++..+++||..+||+||+||||||||+|....++..|+||.|+|++|+++++.+|+.+|++|++.
T Consensus 395 ddg~G---~~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s 471 (827)
T KOG0443|consen 395 DDGSG---KLQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVES 471 (827)
T ss_pred ecCCC---cEEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 45788 799999999999999999999999999999999998666688999999999999999999999999999999
Q ss_pred hCCCccEEEeecCCCChHHHhccCCcEEEccCcccCCCCCCCCcccceEEEEeeCC--ceEEEEEeccccCcccCCCeEE
Q 004590 92 LGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGKSNGETYKISMLTCKGD--HVVRVKEVPFSRSSLNHNDVFI 169 (743)
Q Consensus 92 l~g~~vq~Re~Qg~Es~~Fl~~F~~~ii~~~Gg~~s~f~~~~~~~~~~rL~~vkG~--~~v~~~eV~~s~sSLns~d~FI 169 (743)
++|.++|+|+.||+|||||+++|+|.||+++||.+...+. .....++||||.|+ .+.++.||++.++||||+||||
T Consensus 472 ~kg~~vq~rv~~GkEP~hF~~iFqgkliifkgg~s~~g~~--~~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fv 549 (827)
T KOG0443|consen 472 LKGVPVQVRIYEGKEPPHFLAIFQGKLIIFKGGTSEEGNT--YPAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFV 549 (827)
T ss_pred cCCceeEEEeecCCCChHHHHhhCCceEEEecCcCCCCCc--cCCCceEEEEEeccCcccceeEeeccccccccccceEE
Confidence 9999999999999999999999999999999998753221 23345899999997 4689999999999999999999
Q ss_pred EECCCEEEEEeCCCCCHHHHHHHHHHHHHhhhccCCCceeEEEEcCCccCCCCChhhHHHHhCCCCCCCCCCCCcCCCCC
Q 004590 170 VDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQQP 249 (743)
Q Consensus 170 L~~~~~iyvW~G~~s~~~ek~ka~~~a~~i~~~~~~g~~~v~~v~eg~~~~~~e~~eFw~~lgg~~~~~~~~~~~~~~~~ 249 (743)
|.+++.+|+|+|+.|+..+|.+|..++..|+ +++...+.||. |+++||++|||+.+|++... .+ ..
T Consensus 550 L~t~s~~ylW~G~gss~~e~e~A~~v~~~l~------~~~~~~v~EG~-----Ep~~FWe~LGGk~~Y~~sk~--~~-~~ 615 (827)
T KOG0443|consen 550 LKTGSSVYLWCGKGSSGDEREMAKRVLDLLK------RCQSTAVKEGS-----EPDEFWELLGGKAEYPSSKR--LE-EK 615 (827)
T ss_pred EecCCeEEEEeCCCCCHHHHHHHHHHHHHHh------cCChhhhhcCC-----CchhhHHHcCCCCCCCcCcc--cc-cc
Confidence 9999999999999999999999999999997 25667788885 89999999999999875432 11 22
Q ss_pred CCCCcEEE-EEeCCCCeEEeccCCCcccccCCCceEEEeCCCeEEEEeccCCCHHHHHHHHHHHHHHHHhc---CCCCCC
Q 004590 250 DTPSTTFF-WINLQGKLCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASEDFLRNQ---GRTTGT 325 (743)
Q Consensus 250 ~~~~~rLy-~~~~~G~~~~~e~~~~~q~~L~~~~v~ilD~~~eiyvW~G~~a~~~er~~a~~~A~~y~~~~---~r~~~~ 325 (743)
....|||| |.+.+|.|...|+..|+|+||.++|||||||+++||||+|++++.+||..|+.+|++|++.. ||.|.|
T Consensus 616 ~~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~~p~gr~~~T 695 (827)
T KOG0443|consen 616 PERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETDLPEGRDPRT 695 (827)
T ss_pred CCCCCcEEEEEecCCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhccCcccCCCCC
Confidence 23467999 66789999999999999999999999999999999999999999999999999999999765 888999
Q ss_pred eEEEecCCccchhhhhccccCCCCC
Q 004590 326 HLTFLTEGLETTVFRSYFDSWPQIA 350 (743)
Q Consensus 326 ~i~~v~eG~Ep~~Fk~~F~~W~~~~ 350 (743)
||++|+||+||+.|+++|.+|+...
T Consensus 696 PI~vV~qG~EPp~Ftg~F~~WD~~k 720 (827)
T KOG0443|consen 696 PIYVVKQGHEPPFFTGFFLSWDPSK 720 (827)
T ss_pred ceEEecCCCCCChhhccccccCCcc
Confidence 9999999999999999999999875
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=8.1e-46 Score=399.30 Aligned_cols=317 Identities=24% Similarity=0.429 Sum_probs=276.9
Q ss_pred CcEEEEEEeCCceeecCCccccceecccEEEEEeecC-CCCcceEEEEEEccCCCCHHHHHHHHHHHHHHHHhcCCCceE
Q 004590 389 GILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYP-GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVM 467 (743)
Q Consensus 389 g~l~vwri~~~~~~~vp~~~~G~Fys~d~Yiv~~ty~-~~~~~~~~iy~W~G~~ss~~e~~~aa~~~~~l~~~~~~~~~q 467 (743)
.++.||.|++|-+..+++..||+||.+|||||+.|.. ..|..+|.||||+|.+++.+.+..+|.+|+.|.++++..|..
T Consensus 501 pGltiWeIENF~P~~~eEafHGkFYeaDcYiVLKT~~ddsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~LgA~CRT 580 (1255)
T KOG0444|consen 501 PGLTIWEIENFYPSIMEEAFHGKFYEADCYIVLKTTRDDSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLGATCRT 580 (1255)
T ss_pred CCceEEeehhhhhHHHHHHhccceecccEEEEEEeecccccccceeEEEEecccccccchhhhHHHhhhhhhhhCchhhh
Confidence 4799999999999999999999999999999999985 467899999999999999999999999999999999999999
Q ss_pred EeeeccCCcHHHHhhccc-EEEEEcc-cccCcceeeeecCcccccccccceEEEEEEecCCCceEEEEeccCCCccCCCc
Q 004590 468 AQVHQDMEPVQFFLIFQS-LIVFKGG-LSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSY 545 (743)
Q Consensus 468 ~rv~Qg~Ep~~Fl~lF~~-~~i~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~g~~~~~~~~~ev~~~~~sL~s~d 545 (743)
+|+.||.|+.+||++|+. +++..|| +.+||.-. +. ..--+|||+|.+.. .++.+.-|++..+||.+++
T Consensus 581 vREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~--E~-------~~h~TRlYrv~~~g-~~i~lEPVpl~~tSLDPRf 650 (1255)
T KOG0444|consen 581 VREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTT--EK-------PAHLTRLYRVGVNG-TAIELEPVPLSVTSLDPRF 650 (1255)
T ss_pred hHHhhCccHHHHHHHhcceeEEEecCceecceeee--cc-------hHHhhhhheecccc-ceeEeeccCccccccCcce
Confidence 999999999999999996 7788998 77887532 11 11247999998753 5677778888999999999
Q ss_pred eEEEEcCCEEEEEECCCCCHHHHHHHHHHHHHhCC-----CcceEEeecCCChhhhHHhcCCCCCCCCccccc-----CC
Q 004590 546 CYILQNGASVFTWIGNLSSSRDHDLLDRMVELINP-----TWQPISVREGSEPEVFWNALGGKSEYPREKEIK-----GF 615 (743)
Q Consensus 546 ~fil~~~~~vyvW~G~~s~~~e~~~A~~~a~~l~~-----~~~v~~v~EG~E~~eFw~~Lgg~~~y~~~~~~~-----~~ 615 (743)
||+|+.|.+||||.|-.|.-.--.+|+.+|+.|.. ..+|..+.+|.||+|||.+|||.+.-+...... =.
T Consensus 651 ~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~ 730 (1255)
T KOG0444|consen 651 CFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFV 730 (1255)
T ss_pred EEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccC
Confidence 99999999999999999998888899999999863 357888899999999999999987654322111 13
Q ss_pred CCCCceEEEEccCCceEEeee-----cccccCCCCCCCEEEEeCCCeEEEEecCCCCHHHHHHHHHHHHHHHhhcccccC
Q 004590 616 IEDPHLFTCTLTEGDLKVKEI-----YNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEG 690 (743)
Q Consensus 616 ~~~prLf~~s~~~G~~~v~ei-----~~f~Q~dL~~~~v~iLD~~~~vyVWiG~~as~~ek~~a~~~A~~Y~~~~~~~~~ 690 (743)
+..|+||.+...-|++.+.+| ...+|+.|.+..||||||.+.||||+|+++++-.|..|.++.++...+. .
T Consensus 731 p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RLvraAa~KL~~EL~~M~----d 806 (1255)
T KOG0444|consen 731 PEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRLVRAAAQKLVVELHQMI----D 806 (1255)
T ss_pred CCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchHHHHHHHHHHHHHHHhhh----c
Confidence 557999999999999987766 3689999999999999999999999999999999999999999999874 4
Q ss_pred CCCCCcEEEccCCCCChhchhcc-ccCccc
Q 004590 691 LSLETPIYVVTEGHEPPFFTCFF-AWDPLK 719 (743)
Q Consensus 691 r~~~~pi~~V~~G~Ep~~F~~~F-~W~~~~ 719 (743)
||+...|+++.+|.|...|+..| +||+..
T Consensus 807 RPdyA~V~R~~EG~E~q~FrsKFagWDev~ 836 (1255)
T KOG0444|consen 807 RPDYAQVYRETEGEESQMFRSKFAGWDEVV 836 (1255)
T ss_pred CcchhheeeccCccHHHHHHHhhCCcceee
Confidence 67778899999999999999999 999753
No 6
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=1.8e-42 Score=373.97 Aligned_cols=290 Identities=22% Similarity=0.429 Sum_probs=247.1
Q ss_pred ccEEEEEEECCEEeecCCCCCCccccCCeEEEEeeeec---------------CCCCCceeEEEEccCCCChhhHHHHHH
Q 004590 19 LGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALL---------------KSGPPQHDIHYWLGNDVNEEDSTLVSD 83 (743)
Q Consensus 19 ~~~~vWrIe~~~~~~v~~~~~G~Fy~gd~YIvl~t~~~---------------~~~~~~~~i~~W~G~~ss~de~g~aa~ 83 (743)
..+.+|+|-+|....+| +++|+||++|||||.|.|.. ..|+.++.+|||+|++||..++|+||+
T Consensus 523 ~s~d~W~i~ef~~~~~~-~~~ghF~s~~~YvvrWky~Is~~Vr~~~~g~~~~r~~Gr~rcvyf~WqG~hst~~ekG~~AL 601 (919)
T KOG0445|consen 523 VSVDVWHILEFDYSRLP-QSIGHFHSGDAYVVRWKYMISTAVRSRQKGEHSVRAAGRERCVYFFWQGRHSTVSEKGTSAL 601 (919)
T ss_pred ecccceeeehhhhhhhh-hhhhccccCceEEEEEEEEeehhhhhhhcCccchhhcccceEEEEEEccccCCcccccceee
Confidence 46789999999999999 89999999999999999962 246788999999999999999999999
Q ss_pred HHHHHHHHhCCCccEEEeecCCCChHHHhccCCcEEEccCcccCCCCCCCCcccceEEEEeeCCce--EEEEEeccccCc
Q 004590 84 KALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGKSNGETYKISMLTCKGDHV--VRVKEVPFSRSS 161 (743)
Q Consensus 84 ~a~eLd~~l~g~~vq~Re~Qg~Es~~Fl~~F~~~ii~~~Gg~~s~f~~~~~~~~~~rL~~vkG~~~--v~~~eV~~s~sS 161 (743)
+++|||+.-| .|+|+.||+||+.||++|.|+|.++.|-.+. -.-|||+|+|..+ ..+.||.+..|+
T Consensus 602 ~tvElD~e~g---aqvrv~qG~Ep~~Fl~lF~g~m~vhsgr~E~---------~~erlY~v~G~vs~Et~l~Ev~c~~S~ 669 (919)
T KOG0445|consen 602 MTVELDEERG---AQVRVLQGKEPPCFLQLFQGGMVVHSGRREE---------EEERLYCVRGEVSVETNLLEVACHCSS 669 (919)
T ss_pred eeeeeccccC---ceeEeecCCCccHHHHHhcCCeeEEcCchhh---------chhheeeEecccccchhhhHhhhcccc
Confidence 9999999855 7999999999999999999999999766532 2458999999865 467899999999
Q ss_pred ccCCCeEEEECC--CEEEEEeCCCCCHHHHHHHHHHHHHhhhccCC--CceeEEEEcCCccCCCCChhhHHHHhCCCCCC
Q 004590 162 LNHNDVFIVDTA--SKIFLFSGCNSSIQERAKALEVVQYIKEDKHG--GKCGVATVEDGKFVGDSDVGEFWSLFGGYAPI 237 (743)
Q Consensus 162 Lns~d~FIL~~~--~~iyvW~G~~s~~~ek~ka~~~a~~i~~~~~~--g~~~v~~v~eg~~~~~~e~~eFw~~lgg~~~~ 237 (743)
|+|.-++|+... ..+|+|+|.++-.+.|..+..+|+.|+.+..+ +++.++.||||+ ++..||++||.+.
T Consensus 670 LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~Eveegs-----~~~~~~~alGrkd-- 742 (919)
T KOG0445|consen 670 LRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIHEVEEGS-----EPLGFWDALGRKD-- 742 (919)
T ss_pred ccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeEeecCCC-----Cchhhhhhccccc--
Confidence 999999999865 57999999999999999999999999887653 556788999985 8999999999753
Q ss_pred CCCCCCcCCCCCCCCCcEEEEEeCCCC--eE--EeccCCCcccccCCCceEEEeCCCeEEEEeccCCCHHHHHHHHHHHH
Q 004590 238 PRDSPSAFQQQPDTPSTTFFWINLQGK--LC--QIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASE 313 (743)
Q Consensus 238 ~~~~~~~~~~~~~~~~~rLy~~~~~G~--~~--~~e~~~~~q~~L~~~~v~ilD~~~eiyvW~G~~a~~~er~~a~~~A~ 313 (743)
-.+.+|||-..++-. |. .....||+|++|.+- |+||.|+++|+|. ...+|+.||++|.
T Consensus 743 ------------f~~~~RlF~~sS~qa~els~p~rc~~pFsQ~~Ly~a--fLvD~gdelwLW~----w~s~r~~Aleta~ 804 (919)
T KOG0445|consen 743 ------------FNFAPRLFILSSSQATELSYPARCPMPFSQEDLYSA--FLVDNGDELWLWQ----WASDRKSALETAL 804 (919)
T ss_pred ------------ccccceeeeccchhhhhccCcccCCCcccHHHHhhh--eeeccCCeeEeeh----hhhHHHHHHHHHH
Confidence 134688996642221 11 112489999999875 9999999999999 7788999999999
Q ss_pred HHHHhcCCCCCCeEEEecCCccchhhhhccccCCCCC
Q 004590 314 DFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQIA 350 (743)
Q Consensus 314 ~y~~~~~r~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~ 350 (743)
+|++... .|-.+|..|.||..||.+|++|....
T Consensus 805 ~Ywk~~~----~p~~vV~aGlEPl~Fk~lFp~We~re 837 (919)
T KOG0445|consen 805 QYWKNLK----APSYVVHAGLEPLTFKNLFPSWEHRE 837 (919)
T ss_pred HHHhccC----CCceEEEcCcChhhhhhhCCCceecc
Confidence 9999432 45778999999999999999997653
No 7
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.69 E-value=1.5e-16 Score=139.06 Aligned_cols=88 Identities=44% Similarity=0.748 Sum_probs=81.8
Q ss_pred EEEeeCCceEEEEEeccccCcccCCCeEEEECCCEEEEEeCCCCCHHHHHHHHHHHHHhhhccCCCceeEEEEcCCccCC
Q 004590 141 MLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVG 220 (743)
Q Consensus 141 L~~vkG~~~v~~~eV~~s~sSLns~d~FIL~~~~~iyvW~G~~s~~~ek~ka~~~a~~i~~~~~~g~~~v~~v~eg~~~~ 220 (743)
+++++|...+.+.+|+++.++|+|+||||||++..||+|+|++|+..||.+|+++|+.+....+.+.+.+.+|+||.
T Consensus 2 ~~~~~g~~~~~~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~--- 78 (90)
T smart00262 2 LVRVKGKRNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGK--- 78 (90)
T ss_pred eEEEeCCceEEEEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC---
Confidence 67899988899999999999999999999999999999999999999999999999999877666678999999996
Q ss_pred CCChhhHHHHhCC
Q 004590 221 DSDVGEFWSLFGG 233 (743)
Q Consensus 221 ~~e~~eFw~~lgg 233 (743)
|+.+||.+||+
T Consensus 79 --E~~~F~~~f~~ 89 (90)
T smart00262 79 --EPPEFWSLFGG 89 (90)
T ss_pred --CCHHHHHHhCC
Confidence 88999999986
No 8
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.66 E-value=4.6e-16 Score=136.02 Aligned_cols=77 Identities=25% Similarity=0.558 Sum_probs=72.2
Q ss_pred ccCCCcccccCCCceEEEeCCCeEEEEeccCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCccchhhhhccccC
Q 004590 269 AANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSW 346 (743)
Q Consensus 269 e~~~~~q~~L~~~~v~ilD~~~eiyvW~G~~a~~~er~~a~~~A~~y~~~~~r~~~~~i~~v~eG~Ep~~Fk~~F~~W 346 (743)
...++++++|++++|||||++++||||+|++|+..+|..|+.+|+.|++..+ ++.++|.+|.||.||..|+.+|.+|
T Consensus 14 ~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~-~~~~~i~~v~eg~E~~~F~~~f~~~ 90 (90)
T smart00262 14 PEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLG-PGPVQVRVVDEGKEPPEFWSLFGGW 90 (90)
T ss_pred EEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCCceEEEEeCCCCCHHHHHHhCCC
Confidence 3368999999999999999999999999999999999999999999998765 5779999999999999999999988
No 9
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.39 E-value=4e-13 Score=113.34 Aligned_cols=72 Identities=29% Similarity=0.584 Sum_probs=65.3
Q ss_pred eccCCCcccccCCCceEEEeCCCeEEEEeccCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCccchhhh
Q 004590 268 IAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFR 340 (743)
Q Consensus 268 ~e~~~~~q~~L~~~~v~ilD~~~eiyvW~G~~a~~~er~~a~~~A~~y~~~~~r~~~~~i~~v~eG~Ep~~Fk 340 (743)
.+..++++++|++++|||||++.+||+|+|++++..+|..|+..|+++. ...|++.+.+.++.||.||..|.
T Consensus 5 ~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~-~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 5 PEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELL-SEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp EEEESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH-HHHTTTTSEEEEEETTHHHHHHH
T ss_pred CCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhh-hhcCCCCCEEEEecCCCCChHHC
Confidence 4456899999999999999999999999999999999999999999999 44566778999999999999983
No 10
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.38 E-value=9.1e-13 Score=111.17 Aligned_cols=74 Identities=38% Similarity=0.554 Sum_probs=67.8
Q ss_pred EEEEEeccccCcccCCCeEEEECCCEEEEEeCCCCCHHHHHHHHHHHHHhhhccCCCceeEEEEcCCccCCCCChhhHH
Q 004590 150 VRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFW 228 (743)
Q Consensus 150 v~~~eV~~s~sSLns~d~FIL~~~~~iyvW~G~~s~~~ek~ka~~~a~~i~~~~~~g~~~v~~v~eg~~~~~~e~~eFw 228 (743)
++..+++++.++|+++||||||++..||+|.|+.|+..+|.+|..+|..|...++.+.+.+..+.||+ |+..||
T Consensus 3 ~~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~-----E~~~F~ 76 (76)
T PF00626_consen 3 VRPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGK-----EPAEFL 76 (76)
T ss_dssp EEEEEESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTH-----HHHHHH
T ss_pred ccCCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCC-----CChHHC
Confidence 56778999999999999999999999999999999999999999999999855566788999999996 899997
No 11
>PTZ00395 Sec24-related protein; Provisional
Probab=94.91 E-value=0.088 Score=64.67 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=29.9
Q ss_pred CCCcccccCCCceEEEeCCCeEEEEeccCCCHHH
Q 004590 271 NSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITE 304 (743)
Q Consensus 271 ~~~~q~~L~~~~v~ilD~~~eiyvW~G~~a~~~e 304 (743)
-+++.+-|.++.+||||+|..||||+|+.++..-
T Consensus 1434 LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1434 IPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred ccchHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence 4577788999999999999999999999987544
No 12
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=0.25 Score=58.14 Aligned_cols=88 Identities=23% Similarity=0.307 Sum_probs=61.2
Q ss_pred CCCCceEEEEcc--CCceEEee--ecccccCCCCCCCEEEEeCCCeEEEEecCCCCHHHHH-------------------
Q 004590 616 IEDPHLFTCTLT--EGDLKVKE--IYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQ------------------- 672 (743)
Q Consensus 616 ~~~prLf~~s~~--~G~~~v~e--i~~f~Q~dL~~~~v~iLD~~~~vyVWiG~~as~~ek~------------------- 672 (743)
...|||+-+.+- +-.+.... -.+.+-+-|..++|||||+|..+|+|+|..++....+
T Consensus 856 ~~YPrl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lp 935 (1007)
T KOG1984|consen 856 FFYPRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLP 935 (1007)
T ss_pred hhccceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCcccccccccccccc
Confidence 447999887743 22221111 1377888999999999999999999999998853221
Q ss_pred -------HHHHHHHHHHhhcccccCCCCCCcEEEccCCCCChh
Q 004590 673 -------QALNIGQKFLETDILVEGLSLETPIYVVTEGHEPPF 708 (743)
Q Consensus 673 -------~a~~~A~~Y~~~~~~~~~r~~~~pi~~V~~G~Ep~~ 708 (743)
..+.-+..+|++ -|+...|+.++++|.++.+
T Consensus 936 e~dn~lS~k~r~~i~~i~~-----~r~~~l~v~~~k~g~~~~~ 973 (1007)
T KOG1984|consen 936 ELDNPLSRKVRNVISLIRR-----QRSSELPVVLVKQGLDGSE 973 (1007)
T ss_pred ccCcHHHHHHHHHHHHHHh-----ccccccccEEEecCCCchh
Confidence 123334456654 2456789999999999886
No 13
>PTZ00395 Sec24-related protein; Provisional
Probab=93.91 E-value=0.17 Score=62.39 Aligned_cols=54 Identities=24% Similarity=0.532 Sum_probs=40.0
Q ss_pred CCCceEEEEcc-----------CCceEEeeecccccCCCCCCCEEEEeCCCeEEEEecCCCCHHH
Q 004590 617 EDPHLFTCTLT-----------EGDLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNS 670 (743)
Q Consensus 617 ~~prLf~~s~~-----------~G~~~v~ei~~f~Q~dL~~~~v~iLD~~~~vyVWiG~~as~~e 670 (743)
..||||.+-+- .+.+.+-.-.+.+-+-|.++.|||||+|..||||||+.+++..
T Consensus 1403 LYPRLYpLHdL~~e~e~d~~d~d~~ivLPp~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1403 VYPVMYVIHIKGKTNEIDSMDVDDDLFIPKTIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred hcCceEEcccccccccCCccCCCCccccCCcccchHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence 47999987542 1121122224677888999999999999999999999998754
No 14
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=93.65 E-value=0.12 Score=59.90 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=70.3
Q ss_pred CCCceEEEEc---cCC-----ceEEeeecccccCCCCCCCEEEEeCCCeEEEEecCCCCHHHHHHHHHH-----------
Q 004590 617 EDPHLFTCTL---TEG-----DLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNI----------- 677 (743)
Q Consensus 617 ~~prLf~~s~---~~G-----~~~v~ei~~f~Q~dL~~~~v~iLD~~~~vyVWiG~~as~~ek~~a~~~----------- 677 (743)
-.|+||.+-+ +.| .++.-+--+.+-+-|.+..+||||+|.++|+|+|+.+.+......+.+
T Consensus 708 iYP~lyalHdm~~e~~l~~~~~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~ 787 (861)
T COG5028 708 IYPTLYALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKF 787 (861)
T ss_pred hccceeeecccccccCCCcccccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhcccccc
Confidence 3688887652 332 222111136788889999999999999999999999997655444333
Q ss_pred ------------HHHHHhhcccccCCCCCCcEEEccCCCCChhchhcc--ccCccccccCCCcHHHHHHHhc
Q 004590 678 ------------GQKFLETDILVEGLSLETPIYVVTEGHEPPFFTCFF--AWDPLKAKMHGNSFERKLAILK 735 (743)
Q Consensus 678 ------------A~~Y~~~~~~~~~r~~~~pi~~V~~G~Ep~~F~~~F--~W~~~~~~~~~~~~~~~~~~~~ 735 (743)
+..-|...... .+....|++.|++|.+|. .+..| .-=.+++ ...-+|..=|..|.
T Consensus 788 ~~p~~~n~~n~~v~~iI~~lrs~-~~~~tl~lvlVR~~~d~s-~~~~~~s~lVEDk~-~n~~SY~~yL~~lh 856 (861)
T COG5028 788 TLPPTGNEFNERVRNIIGELRSV-NDDSTLPLVLVRGGGDPS-LRLWFFSTLVEDKT-LNIPSYLDYLQILH 856 (861)
T ss_pred ccCCcCCHHHHHHHHHHHHHHhh-CCCCccceEEEecCCCcc-hhhheehheecccc-cCCccHHHHHHHHH
Confidence 22333322211 223456789999999998 33322 1222222 13567776665553
No 15
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=93.23 E-value=0.15 Score=59.26 Aligned_cols=73 Identities=14% Similarity=0.297 Sum_probs=51.2
Q ss_pred eEEeccCCCcccccCCCceEEEeCCCeEEEEeccCCCHHHHHHHHHH-----------------------HHHHHH---h
Q 004590 265 LCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISA-----------------------SEDFLR---N 318 (743)
Q Consensus 265 ~~~~e~~~~~q~~L~~~~v~ilD~~~eiyvW~G~~a~~~er~~a~~~-----------------------A~~y~~---~ 318 (743)
++....-+++.+.|.+.++|+||+|.+||+|+|+++.+......+.. +...+. +
T Consensus 730 ~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs 809 (861)
T COG5028 730 LVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRS 809 (861)
T ss_pred cccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHh
Confidence 33344446888999999999999999999999999987655444322 222222 2
Q ss_pred cCCCCCCeEEEecCCccch
Q 004590 319 QGRTTGTHLTFLTEGLETT 337 (743)
Q Consensus 319 ~~r~~~~~i~~v~eG~Ep~ 337 (743)
..+....++++|.+|.+|.
T Consensus 810 ~~~~~tl~lvlVR~~~d~s 828 (861)
T COG5028 810 VNDDSTLPLVLVRGGGDPS 828 (861)
T ss_pred hCCCCccceEEEecCCCcc
Confidence 2332345688999999998
No 16
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=0.39 Score=56.61 Aligned_cols=67 Identities=15% Similarity=0.396 Sum_probs=50.1
Q ss_pred CCCcccccCCCceEEEeCCCeEEEEeccCCCHHHHH--------------------------HHHHHHHHHHHhcCCCCC
Q 004590 271 NSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERR--------------------------ISISASEDFLRNQGRTTG 324 (743)
Q Consensus 271 ~~~~q~~L~~~~v~ilD~~~eiyvW~G~~a~~~er~--------------------------~a~~~A~~y~~~~~r~~~ 324 (743)
.+++.+-|...+||+||+|..||+|+|+.++..-.. ..++.+..++.+ -|+..
T Consensus 881 VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~-~r~~~ 959 (1007)
T KOG1984|consen 881 VRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRR-QRSSE 959 (1007)
T ss_pred eecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHHHHh-ccccc
Confidence 467889999999999999999999999987654322 223344455555 46556
Q ss_pred CeEEEecCCccchh
Q 004590 325 THLTFLTEGLETTV 338 (743)
Q Consensus 325 ~~i~~v~eG~Ep~~ 338 (743)
.+++++.+|.++..
T Consensus 960 l~v~~~k~g~~~~~ 973 (1007)
T KOG1984|consen 960 LPVVLVKQGLDGSE 973 (1007)
T ss_pred cccEEEecCCCchh
Confidence 78888888888776
No 17
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.04 E-value=0.3 Score=57.20 Aligned_cols=32 Identities=25% Similarity=0.622 Sum_probs=28.4
Q ss_pred CCCcccccCCCceEEEeCCCeEEEEeccCCCH
Q 004590 271 NSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSI 302 (743)
Q Consensus 271 ~~~~q~~L~~~~v~ilD~~~eiyvW~G~~a~~ 302 (743)
-+++-+.|+...+|++|||..+|+|+|+.|..
T Consensus 763 L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 763 LNLTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred cchHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 45677899999999999999999999999853
No 18
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.74 E-value=1 Score=52.95 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=37.8
Q ss_pred CCCceEEEEcc---CCceEEe------eecccccCCCCCCCEEEEeCCCeEEEEecCCCCH
Q 004590 617 EDPHLFTCTLT---EGDLKVK------EIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDL 668 (743)
Q Consensus 617 ~~prLf~~s~~---~G~~~v~------ei~~f~Q~dL~~~~v~iLD~~~~vyVWiG~~as~ 668 (743)
-.|.||++.+- .|....+ ..-+.+-+-|....+||+|||.++|||+|+.|.+
T Consensus 734 IYP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 734 IYPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred hcccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 35778876632 2322212 2236778889999999999999999999999873
No 19
>PLN00162 transport protein sec23; Provisional
Probab=77.68 E-value=9.4 Score=46.47 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=51.4
Q ss_pred CcEEEEEeCCCCeEEeccCCCcccccCCCceEEEeCCCeEEEEeccCC------------CHHHHHHHHHHHHHHHHh--
Q 004590 253 STTFFWINLQGKLCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNT------------SITERRISISASEDFLRN-- 318 (743)
Q Consensus 253 ~~rLy~~~~~G~~~~~e~~~~~q~~L~~~~v~ilD~~~eiyvW~G~~a------------~~~er~~a~~~A~~y~~~-- 318 (743)
.|+||.+.-++... ...++.+-|.+|.+||||++..|+||.|... ..+..+..++..++.++.
T Consensus 620 ~P~L~sy~~~~~P~---pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~ 696 (761)
T PLN00162 620 QPTLISYSFNGPPE---PVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAII 696 (761)
T ss_pred CCeEEEecCCCCCc---ceecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHH
Confidence 56787664333222 2346677889999999999999999999532 112233444433333332
Q ss_pred cCCCCCCeEEEecCCccchhh
Q 004590 319 QGRTTGTHLTFLTEGLETTVF 339 (743)
Q Consensus 319 ~~r~~~~~i~~v~eG~Ep~~F 339 (743)
..|-|-+.+....||+--+=|
T Consensus 697 ~~Rfp~Pr~i~~~~~~SqaRf 717 (761)
T PLN00162 697 KERFPVPRLVVCDQHGSQARF 717 (761)
T ss_pred hcCCCCCeEEEeCCCCcHHHH
Confidence 247676777777777644433
No 20
>PLN00162 transport protein sec23; Provisional
Probab=68.96 E-value=13 Score=45.27 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=54.2
Q ss_pred CCCceEEEEccCCceEEeeecccccCCCCCCCEEEEeCCCeEEEEecCCCC------------HHHHHHHHHHHHHHHhh
Q 004590 617 EDPHLFTCTLTEGDLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSD------------LNSKQQALNIGQKFLET 684 (743)
Q Consensus 617 ~~prLf~~s~~~G~~~v~ei~~f~Q~dL~~~~v~iLD~~~~vyVWiG~~as------------~~ek~~a~~~A~~Y~~~ 684 (743)
-.|+||..+.. |- -+-..++.+.|.+|.|+|||++..|+||.|.... ..-.+..++..++.++.
T Consensus 619 I~P~L~sy~~~-~~---P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~ 694 (761)
T PLN00162 619 IQPTLISYSFN-GP---PEPVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQA 694 (761)
T ss_pred hCCeEEEecCC-CC---CcceecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHH
Confidence 37999988743 21 1113567778899999999999999999995322 12234445555555443
Q ss_pred cccccCCCCCCc-EEEccCCCCChhch
Q 004590 685 DILVEGLSLETP-IYVVTEGHEPPFFT 710 (743)
Q Consensus 685 ~~~~~~r~~~~p-i~~V~~G~Ep~~F~ 710 (743)
.- +.|-| +| +++..+|.--..|-
T Consensus 695 ~~--~~Rfp-~Pr~i~~~~~~SqaRfl 718 (761)
T PLN00162 695 II--KERFP-VPRLVVCDQHGSQARFL 718 (761)
T ss_pred HH--hcCCC-CCeEEEeCCCCcHHHHH
Confidence 21 23433 45 45677776666664
No 21
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=50.81 E-value=27 Score=39.12 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=70.4
Q ss_pred ccCCchhccCCccccEEEEEEECC----EEeecCCCCCCcc-------ccCC-eEEEEeeeecCCCCCceeEEEEccCCC
Q 004590 6 KDIDSAFEGAGKKLGLEIWCIENL----QLVSVPKSSHGKF-------YTGS-AYVILNTALLKSGPPQHDIHYWLGNDV 73 (743)
Q Consensus 6 ~~~~~~~~~~g~~~~~~vWrIe~~----~~~~v~~~~~G~F-------y~gd-~YIvl~t~~~~~~~~~~~i~~W~G~~s 73 (743)
..++.+|.++=....-..|-|=.+ ....+...-+|.| -++- .|+.+-.-...++...+++-.|+|..+
T Consensus 11 aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~~~~~e~~~df~~~kv~yg~~rv~D~~s~l~KfvLI~W~GE~v 90 (484)
T KOG3655|consen 11 AEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGEGGLEEFLGDFDSGKVMYGFCRVKDPMSGLPKFVLINWIGEGV 90 (484)
T ss_pred HHHHHHHHHhhccCCCceeEEEeecCCccceeeeccccccHHHHhhhcccCceeEEEEEecCcccCCcceEEEEecCCcc
Confidence 445566776655556778888433 2333444444432 2221 355443332234556788899999999
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCccEE--EeecCCCChHHHhccC
Q 004590 74 NEEDSTLVSDKALELDAALGSCTVQY--REVQGQETEKFLSYFR 115 (743)
Q Consensus 74 s~de~g~aa~~a~eLd~~l~g~~vq~--Re~Qg~Es~~Fl~~F~ 115 (743)
+.-.++.+|.++..+.+.|+|-.|++ |...-=+...|+.-..
T Consensus 91 p~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 91 PVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred HHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 99999999999999999999988764 4444445555555443
No 22
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=44.14 E-value=92 Score=28.52 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=49.1
Q ss_pred ccEEEEEEECC-EEeecCCC-C-C-------CccccCC-eEEEEeeee-c-CCCCCceeEEEEccCCCChhhHHHHHHHH
Q 004590 19 LGLEIWCIENL-QLVSVPKS-S-H-------GKFYTGS-AYVILNTAL-L-KSGPPQHDIHYWLGNDVNEEDSTLVSDKA 85 (743)
Q Consensus 19 ~~~~vWrIe~~-~~~~v~~~-~-~-------G~Fy~gd-~YIvl~t~~-~-~~~~~~~~i~~W~G~~ss~de~g~aa~~a 85 (743)
...-||+|... +...+... . - ..|-+.+ +|+++.--. . .+......+.+|.+..++..++...|..-
T Consensus 16 ~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w~P~~a~~~~km~yas~k 95 (127)
T smart00102 16 HSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTEESKKSKIVFIFWSPDGAPVKSKMLYASSK 95 (127)
T ss_pred ceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccCCCccccEEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999864 22223222 1 1 1244444 477654321 1 12233467788999999999999888888
Q ss_pred HHHHHHhCCCc
Q 004590 86 LELDAALGSCT 96 (743)
Q Consensus 86 ~eLd~~l~g~~ 96 (743)
..+...|+|-.
T Consensus 96 ~~l~~~l~~~~ 106 (127)
T smart00102 96 DTLKKELGGIQ 106 (127)
T ss_pred HHHHHHcCCce
Confidence 88888888743
No 23
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=40.26 E-value=87 Score=28.53 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=53.0
Q ss_pred ccEEEEEEECC-EEeecCCC--CCC-------ccccCC-eEEEEee-eecCCCC-CceeEEEEccCCCChhhHHHHHHHH
Q 004590 19 LGLEIWCIENL-QLVSVPKS--SHG-------KFYTGS-AYVILNT-ALLKSGP-PQHDIHYWLGNDVNEEDSTLVSDKA 85 (743)
Q Consensus 19 ~~~~vWrIe~~-~~~~v~~~--~~G-------~Fy~gd-~YIvl~t-~~~~~~~-~~~~i~~W~G~~ss~de~g~aa~~a 85 (743)
...-+++|++. ..+.|.+. ..+ .|=+.+ +|+++.- +...++. ....+.+|++.+++..++..-|..-
T Consensus 16 ~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~P~~~~vk~km~yas~k 95 (127)
T PF00241_consen 16 TRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHKGSRRSKLVFIYWCPDNAPVKEKMLYASSK 95 (127)
T ss_dssp CSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEETTSEEEEEEEEEEESTTS-HHHHHHHHHHH
T ss_pred ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeecccCCCCceEEEEEEecCCccHHHhhhhHHhH
Confidence 46788999887 33333322 111 244455 6666532 2222222 2455668999999999999888888
Q ss_pred HHHHHHhCCCccEEEeecCCCChH
Q 004590 86 LELDAALGSCTVQYREVQGQETEK 109 (743)
Q Consensus 86 ~eLd~~l~g~~vq~Re~Qg~Es~~ 109 (743)
..|-..+++ .+.++|..+..+
T Consensus 96 ~~l~~~l~~---~~~~~~~~d~~d 116 (127)
T PF00241_consen 96 ASLKKKLGG---IHIEIQASDPDD 116 (127)
T ss_dssp HHHHHHCTT---EEEEEEESSGGG
T ss_pred HHHHHHhCC---ceEEEEECChHH
Confidence 888888987 333555555443
No 24
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=34.76 E-value=1e+02 Score=34.66 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=55.6
Q ss_pred ccceecccEEEEEeecC--CCCcceEEEEEEccCCCCHHHHHHHHHHHHHHHHhcCCCceE--EeeeccCCcHHHHhhcc
Q 004590 409 QMKLFSGDCYIVKYTYP--GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVM--AQVHQDMEPVQFFLIFQ 484 (743)
Q Consensus 409 ~G~Fys~d~Yiv~~ty~--~~~~~~~~iy~W~G~~ss~~e~~~aa~~~~~l~~~~~~~~~q--~rv~Qg~Ep~~Fl~lF~ 484 (743)
.+.|-++-.--++++.. .++..++++--|+|..+...-++.++.++..+.+.|+|-.++ .|...--++..|++-..
T Consensus 55 ~~df~~~kv~yg~~rv~D~~s~l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 55 LGDFDSGKVMYGFCRVKDPMSGLPKFVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred hhhcccCceeEEEEEecCcccCCcceEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 34444443333344443 345678999999999999888899999998889999886664 47777778888887765
Q ss_pred c
Q 004590 485 S 485 (743)
Q Consensus 485 ~ 485 (743)
.
T Consensus 135 ~ 135 (484)
T KOG3655|consen 135 K 135 (484)
T ss_pred h
Confidence 3
No 25
>PLN03216 actin depolymerizing factor; Provisional
Probab=34.24 E-value=3.5e+02 Score=25.46 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=56.0
Q ss_pred CccccEEEEEEECC-EEeecCCC-CCCccc--------cCCe-EEEEee-eecCCCC--CceeEEEEccCCCChhhHHHH
Q 004590 16 GKKLGLEIWCIENL-QLVSVPKS-SHGKFY--------TGSA-YVILNT-ALLKSGP--PQHDIHYWLGNDVNEEDSTLV 81 (743)
Q Consensus 16 g~~~~~~vWrIe~~-~~~~v~~~-~~G~Fy--------~gd~-YIvl~t-~~~~~~~--~~~~i~~W~G~~ss~de~g~a 81 (743)
++....-|.+|++. +.+.|++. .-|..| +.+| |+|+.- |....+. ....+.+|...+++..++-.-
T Consensus 26 ~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~~klvFI~w~Pd~a~vk~KMlY 105 (141)
T PLN03216 26 KKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASRIRAKMLY 105 (141)
T ss_pred CCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcccCEEEEEECCCCCCHHHHHHH
Confidence 33347899999865 23333322 223322 3344 887542 2222222 245667899999999998888
Q ss_pred HHHHHHHHHHhCCCccEEEeecCCCChH
Q 004590 82 SDKALELDAALGSCTVQYREVQGQETEK 109 (743)
Q Consensus 82 a~~a~eLd~~l~g~~vq~Re~Qg~Es~~ 109 (743)
|.--.-|-+.|+|-. .++|..+..+
T Consensus 106 AssK~~lk~~l~gi~---~~iqatd~~e 130 (141)
T PLN03216 106 ATSKDGLRRVLDGVH---YELQATDPTE 130 (141)
T ss_pred HHHHHHHHHHhcCCe---EEEEECChHh
Confidence 777778888888754 3566665543
No 26
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=32.27 E-value=44 Score=32.54 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=54.0
Q ss_pred EEEEEEecCCCceEEEEeccCCCccCCCceEEEEcCCEEEEEECCCCCHHHHHHHHHHHHHhCCCcceEEeecCCChhhh
Q 004590 517 ALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDHDLLDRMVELINPTWQPISVREGSEPEVF 596 (743)
Q Consensus 517 ~L~~v~g~~~~~~~~~ev~~~~~sL~s~d~fil~~~~~vyvW~G~~s~~~e~~~A~~~a~~l~~~~~v~~v~EG~E~~eF 596 (743)
-++||.|..+-- +.|--...--|+++..|||.+.+.++- ..+.++.++++.+. .-|.+.-.|-.|++|
T Consensus 93 d~vRiSG~EP~l--~~EHvlevIeLl~~~tFvlETNG~~~g--------~drslv~el~nr~n--v~vRVsvKG~dpesF 160 (228)
T COG5014 93 DLVRISGAEPIL--GREHVLEVIELLVNNTFVLETNGLMFG--------FDRSLVDELVNRLN--VLVRVSVKGWDPESF 160 (228)
T ss_pred cEEEeeCCCccc--cHHHHHHHHHhccCceEEEEeCCeEEe--------cCHHHHHHHhcCCc--eEEEEEecCCCHHHH
Confidence 477888754322 112222334588999999999888764 34667777777643 556677789999999
Q ss_pred HHhcCCCCCC
Q 004590 597 WNALGGKSEY 606 (743)
Q Consensus 597 w~~Lgg~~~y 606 (743)
-++-|..++|
T Consensus 161 ~kIT~asp~~ 170 (228)
T COG5014 161 EKITGASPEY 170 (228)
T ss_pred HHHhcCChHH
Confidence 9988877665
No 27
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=29.40 E-value=1.9e+02 Score=26.35 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=45.6
Q ss_pred ccEEEEEEEC--CEEeecCCCCCC---------ccccCC-eEEEEeeeec-C-CCCCceeEEEEccCCCChhhHHHHHHH
Q 004590 19 LGLEIWCIEN--LQLVSVPKSSHG---------KFYTGS-AYVILNTALL-K-SGPPQHDIHYWLGNDVNEEDSTLVSDK 84 (743)
Q Consensus 19 ~~~~vWrIe~--~~~~~v~~~~~G---------~Fy~gd-~YIvl~t~~~-~-~~~~~~~i~~W~G~~ss~de~g~aa~~ 84 (743)
...-|.+|+. ...+. ....-| .|-+.+ +|+++..... + +......+.+|.+..++..++..-|..
T Consensus 22 ~~~vi~~i~~~~~~i~~-~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~k~vfI~w~P~~a~~k~km~yas~ 100 (132)
T cd00013 22 TRWIIFKIDDDKKEIVV-EKTGEGGESFDEFVEELPEDECRYALYDYDFTTEGSKKSKIVFIYWSPETAPVKSKMLYASS 100 (132)
T ss_pred eeEEEEEEcCCCCEEEE-EecCCCCCCHHHHHHhCCcCCceEEEEEecccCCCccccCEEEEEECCCCCChhhhhhhHHH
Confidence 4566777776 23332 222222 233344 5776543221 1 223456778999999999998877777
Q ss_pred HHHHHHHhCCC
Q 004590 85 ALELDAALGSC 95 (743)
Q Consensus 85 a~eLd~~l~g~ 95 (743)
-..|-+.++|-
T Consensus 101 k~~l~~~l~~~ 111 (132)
T cd00013 101 KAALKRELVGI 111 (132)
T ss_pred HHHHHHhcCCc
Confidence 77777777765
No 28
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=28.73 E-value=2.6e+02 Score=25.31 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=32.6
Q ss_pred ceecccEEEEEeecC----CCCcceEEEEEEccCCCCHHHHHHHHHHHHHHHHhcCC
Q 004590 411 KLFSGDCYIVKYTYP----GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRG 463 (743)
Q Consensus 411 ~Fys~d~Yiv~~ty~----~~~~~~~~iy~W~G~~ss~~e~~~aa~~~~~l~~~~~~ 463 (743)
++-+.+|.-++|.|. +..+...++.+|.+..++..++..-|.....+...+++
T Consensus 48 ~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~P~~~~vk~km~yas~k~~l~~~l~~ 104 (127)
T PF00241_consen 48 HLPDDEPRYILYRFEYTHKGSRRSKLVFIYWCPDNAPVKEKMLYASSKASLKKKLGG 104 (127)
T ss_dssp CSCTTSEEEEEEEEEEEETTSEEEEEEEEEEESTTS-HHHHHHHHHHHHHHHHHCTT
T ss_pred hcccCCcEEEEEEeeecccCCCCceEEEEEEecCCccHHHhhhhHHhHHHHHHHhCC
Confidence 344556444444442 33345667778999999999886555555556666766
No 29
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=22.24 E-value=3.5e+02 Score=24.66 Aligned_cols=52 Identities=17% Similarity=0.342 Sum_probs=33.3
Q ss_pred ceecccE-EEEEeecC----CCCcceEEEEEEccCCCCHHHHHHHHHHHHHHHHhcCC
Q 004590 411 KLFSGDC-YIVKYTYP----GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRG 463 (743)
Q Consensus 411 ~Fys~d~-Yiv~~ty~----~~~~~~~~iy~W~G~~ss~~e~~~aa~~~~~l~~~~~~ 463 (743)
.|-+.+| |+ +|.|. +..+...++.+|.|..++..++..-|.....+...++|
T Consensus 48 ~l~~~~~ry~-~~~~~~~~~~~~~~k~vfI~w~P~~a~~~~km~yas~k~~l~~~l~~ 104 (127)
T smart00102 48 ELPEDECRYA-LYDYKFTTEESKKSKIVFIFWSPDGAPVKSKMLYASSKDTLKKELGG 104 (127)
T ss_pred hCCccCceEE-EEEeecccCCCccccEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3444555 54 44453 22345677889999999999887655555556666665
Done!