BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004593
(743 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FJI|1 Chain 1, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
pdb|2FJI|2 Chain 2, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
Length = 399
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/367 (20%), Positives = 150/367 (40%), Gaps = 64/367 (17%)
Query: 397 DPLMNAYVERMQATTKKWYLNILDAD------KVQPPKRTEDGKLYTPAAVDLFRILGEQ 450
+ L Y+ + +W N+ A+ + PP DG L+ F++ +Q
Sbjct: 10 ETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQ 69
Query: 451 VQIVRDNSTDVMLYRISLAIIQVMIDFQAAERQRLAE--------------------PAS 490
V++ + +L + ++ Q +++E P
Sbjct: 70 VEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPED 129
Query: 491 EI--GL-EPLCAIINNNLRCYDLAMELS---------------TSTIESLPPNYAE--QE 530
E GL E L A+ N+ ++ D A+ +S T+ +E +AE Q
Sbjct: 130 ECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQC 189
Query: 531 ALFHLISVIFDDPEVQQLFLKLYSKEWSDGQVTEYILPTFSDYFADVKMFVEERSFRRFV 590
+ LI+++FDD +++ + +++SK W G + I T +Y D+K + F F+
Sbjct: 190 SSLGLITLMFDD--LRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFI 247
Query: 591 EACLEETIVLFI-----DHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKVESKVR 645
+ + ETI+ F+ +H KN +E M+ D E + F + + N ESK
Sbjct: 248 DNVIGETIIKFLTALSFEHSFKNKN---NKFLEAMKRDFEIFYQLFVKVLDGN--ESKDT 302
Query: 646 VLTDMRELA------SANSVDAFALIYTNVLEHQPDCPPEVVERLVALREAIPRKDAKEI 699
++T + S +D+ I+ LE D +++ ++ R+ + + K+I
Sbjct: 303 LITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKI 362
Query: 700 VQECKEI 706
VQ+ E+
Sbjct: 363 VQQATEM 369
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 34 MKADYIARQQANDAQLSTMVAEQIEQ---AQTGLESLALSQNTINQLRENFISIERYCQE 90
M AD++++ + +IEQ +TGL ++ T+ +L+E F+ + +
Sbjct: 5 MLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRV-KTVPL 63
Query: 91 CQTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDDKELVNTYERLTA 150
+ + H LL + NL L + +EAAE D +D + Y+ +
Sbjct: 64 LSKVDDIHAICSLLKDFLRNLKEPLLTFR-LNRAFMEAAEITD---EDNSIAAMYQAVGE 119
Query: 151 LDGKRRFALAAAASHIDEVGRLREYFEDVDQTWETFEKTLWTH 193
L R LA H+ V + DV + F T+ H
Sbjct: 120 LPQANRDTLAFLMIHLQRVAQSPHTKMDVANLAKVFGPTIVAH 162
>pdb|3O9Z|A Chain A, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3O9Z|B Chain B, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3O9Z|C Chain C, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3O9Z|D Chain D, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3OA0|A Chain A, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
pdb|3OA0|B Chain B, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
pdb|3OA0|C Chain C, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
pdb|3OA0|D Chain D, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
Length = 312
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 392 ESGAMDPLMNAYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQV 451
E A P +NA ++ +W+L+I D V P R + + Y AVD GE+V
Sbjct: 203 EVHARTPTVNAGYLELEGARVRWFLSI-DPSFVPEPLRRQGKRTYRSIAVD-----GEEV 256
Query: 452 QIVRDNSTDVM--LYRISLAIIQVMIDFQAAERQRLA 486
+ + TD+ +YR +LA +D +AAE R+A
Sbjct: 257 EF-SEGFTDLHTEVYRKTLAGEGFGLD-EAAEAIRVA 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,439,837
Number of Sequences: 62578
Number of extensions: 759435
Number of successful extensions: 2434
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2430
Number of HSP's gapped (non-prelim): 11
length of query: 743
length of database: 14,973,337
effective HSP length: 106
effective length of query: 637
effective length of database: 8,340,069
effective search space: 5312623953
effective search space used: 5312623953
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)