Query 004593
Match_columns 743
No_of_seqs 157 out of 403
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 01:55:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06046 Sec6: Exocyst complex 100.0 6.8E-90 1.5E-94 796.5 21.3 526 176-726 1-566 (566)
2 KOG2286 Exocyst complex subuni 100.0 1.3E-82 2.7E-87 707.6 60.0 633 12-727 2-665 (667)
3 COG5173 SEC6 Exocyst complex s 100.0 3E-77 6.5E-82 625.4 64.5 692 13-732 3-741 (742)
4 KOG2180 Late Golgi protein sor 100.0 1.5E-44 3.2E-49 391.6 55.8 621 12-710 19-740 (793)
5 PF04100 Vps53_N: Vps53-like, 100.0 2.7E-27 5.9E-32 256.7 34.2 345 13-423 5-382 (383)
6 KOG0412 Golgi transport comple 99.7 1E-12 2.2E-17 144.9 51.3 287 396-692 424-772 (773)
7 PF10191 COG7: Golgi complex c 99.0 8.4E-05 1.8E-09 88.8 52.9 595 13-689 11-766 (766)
8 PF07393 Sec10: Exocyst comple 98.7 0.0004 8.7E-09 83.1 45.2 367 320-695 209-706 (710)
9 KOG2176 Exocyst complex, subun 98.3 0.015 3.2E-07 67.0 55.2 626 32-686 47-759 (800)
10 PF04437 RINT1_TIP1: RINT-1 / 97.9 0.0032 7E-08 72.1 25.0 338 310-657 40-448 (494)
11 PF05664 DUF810: Protein of un 97.7 0.0026 5.6E-08 74.1 20.8 206 276-486 384-603 (677)
12 PF06419 COG6: Conserved oligo 97.4 0.44 9.4E-06 56.1 40.1 111 331-453 303-414 (618)
13 PF10475 DUF2450: Protein of u 96.6 0.52 1.1E-05 50.1 22.8 172 17-197 18-191 (291)
14 PF04048 Sec8_exocyst: Sec8 ex 95.9 0.24 5.2E-06 46.5 14.1 101 30-130 37-141 (142)
15 PF06248 Zw10: Centromere/kine 95.7 6 0.00013 46.6 40.9 168 27-200 8-180 (593)
16 PF10474 DUF2451: Protein of u 95.3 1.1 2.4E-05 45.8 17.2 164 531-704 58-233 (234)
17 PF04091 Sec15: Exocyst comple 94.7 0.47 1E-05 50.8 13.1 151 531-686 145-308 (311)
18 PF08318 COG4: COG4 transport 93.9 11 0.00024 40.8 27.3 80 397-476 238-319 (331)
19 PF01843 DIL: DIL domain; Int 93.7 0.43 9.3E-06 42.3 8.8 96 589-686 2-97 (105)
20 smart00762 Cog4 COG4 transport 92.0 1.2 2.7E-05 47.9 11.1 79 395-475 234-312 (324)
21 PF15469 Sec5: Exocyst complex 91.9 13 0.00028 36.3 17.4 139 47-198 2-152 (182)
22 KOG2286 Exocyst complex subuni 91.5 1.8 3.9E-05 50.5 12.1 123 585-709 233-359 (667)
23 PF10392 COG5: Golgi transport 91.0 10 0.00023 35.0 14.7 110 14-123 10-124 (132)
24 KOG1011 Neurotransmitter relea 88.8 50 0.0011 37.9 24.6 185 324-514 668-864 (1283)
25 KOG3691 Exocyst complex subuni 86.3 83 0.0018 37.7 21.9 106 24-129 41-150 (982)
26 PF08700 Vps51: Vps51/Vps67; 85.0 16 0.00036 30.7 11.1 75 14-89 8-82 (87)
27 KOG3958 Putative dynamitin [Cy 84.4 37 0.0008 35.3 14.6 108 14-121 213-326 (371)
28 PF10112 Halogen_Hydrol: 5-bro 82.9 34 0.00075 33.9 14.1 124 44-198 64-188 (199)
29 PF09763 Sec3_C: Exocyst compl 81.2 96 0.0021 37.3 19.5 166 30-199 2-180 (701)
30 PF07889 DUF1664: Protein of u 80.1 41 0.00088 30.8 12.0 68 60-129 48-116 (126)
31 PF04912 Dynamitin: Dynamitin 78.7 87 0.0019 34.7 16.8 50 70-119 293-342 (388)
32 KOG2115 Vacuolar sorting prote 71.2 2.5E+02 0.0053 34.1 25.3 114 25-145 235-355 (951)
33 cd07636 BAR_GRAF The Bin/Amphi 71.1 98 0.0021 31.0 13.0 80 81-163 11-91 (207)
34 PF12252 SidE: Dot/Icm substra 68.1 2.8E+02 0.0061 34.3 17.6 55 145-199 1210-1266(1439)
35 PF04011 LemA: LemA family; I 68.0 1.2E+02 0.0025 29.8 13.0 96 31-126 25-157 (186)
36 cd07639 BAR_ACAP1 The Bin/Amph 66.2 1.3E+02 0.0028 30.0 12.8 82 67-163 4-85 (200)
37 PF03908 Sec20: Sec20; InterP 64.9 65 0.0014 27.6 9.3 55 48-102 12-66 (92)
38 PF11264 ThylakoidFormat: Thyl 62.9 1.1E+02 0.0025 30.7 11.7 123 565-701 1-125 (216)
39 PF07889 DUF1664: Protein of u 61.7 90 0.002 28.6 9.8 74 11-98 41-115 (126)
40 KOG1937 Uncharacterized conser 60.4 2.7E+02 0.0059 31.0 14.6 24 38-61 360-383 (521)
41 PLN03060 inositol phosphatase- 59.9 1.5E+02 0.0033 29.5 11.8 112 564-689 3-116 (206)
42 PRK13266 Thf1-like protein; Re 59.4 1.5E+02 0.0033 30.0 11.9 115 563-691 4-120 (225)
43 KOG0250 DNA repair protein RAD 58.8 4.5E+02 0.0097 32.8 18.9 14 598-611 943-956 (1074)
44 PF04124 Dor1: Dor1-like famil 58.1 2.7E+02 0.0059 30.1 35.1 99 27-129 8-114 (338)
45 KOG2218 ER to golgi transport 57.3 4E+02 0.0087 31.7 51.9 154 532-689 563-735 (737)
46 PF02845 CUE: CUE domain; Int 56.4 26 0.00057 25.1 4.5 27 665-691 4-31 (42)
47 PF06148 COG2: COG (conserved 55.2 22 0.00048 32.8 5.1 104 30-133 27-131 (133)
48 PF08317 Spc7: Spc7 kinetochor 54.7 1.7E+02 0.0037 31.5 12.4 13 168-180 277-289 (325)
49 PRK04778 septation ring format 52.9 4.4E+02 0.0095 30.9 20.7 137 15-153 50-205 (569)
50 KOG0243 Kinesin-like protein [ 52.2 5.5E+02 0.012 32.0 16.9 34 65-98 539-572 (1041)
51 smart00546 CUE Domain that may 52.1 32 0.00069 24.8 4.4 28 664-691 4-32 (43)
52 PF06160 EzrA: Septation ring 50.2 4.8E+02 0.01 30.5 17.3 66 34-99 19-95 (560)
53 KOG3758 Uncharacterized conser 49.9 4.8E+02 0.01 30.4 44.0 39 563-601 579-618 (655)
54 cd07635 BAR_GRAF2 The Bin/Amph 49.6 2.3E+02 0.005 28.4 11.3 22 99-120 30-51 (207)
55 PF05478 Prominin: Prominin; 49.3 5.9E+02 0.013 31.3 20.8 82 32-117 205-289 (806)
56 PF08580 KAR9: Yeast cortical 47.7 4.6E+02 0.01 31.4 15.4 46 53-98 31-76 (683)
57 PF07926 TPR_MLP1_2: TPR/MLP1/ 47.4 1.8E+02 0.0039 26.8 9.7 41 3-43 33-73 (132)
58 PF05531 NPV_P10: Nucleopolyhe 46.2 76 0.0017 26.2 6.0 27 55-81 18-44 (75)
59 PHA03332 membrane glycoprotein 45.8 4.4E+02 0.0096 32.7 14.4 46 60-105 879-925 (1328)
60 TIGR03060 PS_II_psb29 photosys 45.2 2.9E+02 0.0063 27.8 11.2 114 563-690 4-119 (214)
61 PLN00047 photosystem II biogen 45.2 1.5E+02 0.0032 31.0 9.4 113 562-688 54-168 (283)
62 KOG0994 Extracellular matrix g 44.1 7.7E+02 0.017 31.2 18.7 7 146-152 1619-1625(1758)
63 KOG0994 Extracellular matrix g 42.2 8.2E+02 0.018 30.9 22.2 12 54-65 1562-1573(1758)
64 PF04124 Dor1: Dor1-like famil 41.9 4.8E+02 0.01 28.2 18.8 53 37-89 11-63 (338)
65 PF15450 DUF4631: Domain of un 41.8 5.7E+02 0.012 29.2 13.8 66 11-76 346-412 (531)
66 PF08649 DASH_Dad1: DASH compl 41.2 1.7E+02 0.0038 22.9 7.3 42 54-95 15-56 (58)
67 PF15290 Syntaphilin: Golgi-lo 40.7 2.9E+02 0.0064 28.7 10.5 19 67-85 119-137 (305)
68 PHA03332 membrane glycoprotein 38.9 6.7E+02 0.015 31.2 14.5 16 104-119 950-965 (1328)
69 COG1579 Zn-ribbon protein, pos 37.8 4.7E+02 0.01 26.9 20.1 26 173-198 159-184 (239)
70 PF08654 DASH_Dad2: DASH compl 37.8 2.8E+02 0.0061 24.4 8.8 54 35-88 3-61 (103)
71 PF14923 CCDC142: Coiled-coil 37.4 1.6E+02 0.0035 33.0 9.0 70 563-633 278-348 (450)
72 smart00787 Spc7 Spc7 kinetocho 36.5 5.6E+02 0.012 27.4 12.9 11 146-156 253-263 (312)
73 PF10602 RPN7: 26S proteasome 35.9 4.1E+02 0.009 25.7 11.4 95 29-123 3-101 (177)
74 PF08651 DASH_Duo1: DASH compl 35.4 2.6E+02 0.0057 23.3 8.9 53 56-111 9-62 (78)
75 PF10828 DUF2570: Protein of u 35.3 2.3E+02 0.0049 25.2 8.1 34 89-122 74-109 (110)
76 KOG2148 Exocyst protein Sec3 [ 35.0 8.2E+02 0.018 28.9 15.5 87 32-119 192-280 (867)
77 COG1579 Zn-ribbon protein, pos 34.6 5.3E+02 0.011 26.5 19.2 43 56-98 29-71 (239)
78 PF02650 HTH_WhiA: WhiA C-term 32.6 1.4E+02 0.003 25.4 5.8 61 645-707 24-84 (85)
79 PF10157 DUF2365: Uncharacteri 32.1 4.4E+02 0.0096 24.9 13.6 31 25-55 51-81 (149)
80 PF03915 AIP3: Actin interacti 31.9 7.8E+02 0.017 27.6 13.4 58 21-78 218-276 (424)
81 PF09731 Mitofilin: Mitochondr 31.6 8.9E+02 0.019 28.3 15.2 34 31-64 309-342 (582)
82 KOG4331 Polytopic membrane pro 31.3 5.8E+02 0.013 30.9 12.4 60 29-89 252-312 (865)
83 PLN02939 transferase, transfer 30.6 1.2E+03 0.025 29.3 19.1 44 8-55 148-192 (977)
84 COG3028 Uncharacterized protei 30.5 4.2E+02 0.0091 25.6 9.1 80 590-686 74-154 (187)
85 PRK02224 chromosome segregatio 30.5 1.1E+03 0.024 29.0 22.9 20 66-85 207-226 (880)
86 PF09164 VitD-bind_III: Vitami 30.4 30 0.00065 27.5 1.3 24 668-691 21-44 (68)
87 cd07602 BAR_RhoGAP_OPHN1-like 29.6 5.9E+02 0.013 25.5 16.1 86 67-163 4-91 (207)
88 PF04156 IncA: IncA protein; 29.4 5.4E+02 0.012 25.0 14.2 13 32-44 87-99 (191)
89 PF00015 MCPsignal: Methyl-acc 29.3 5.4E+02 0.012 25.0 14.7 7 177-183 201-207 (213)
90 KOG1086 Cytosolic sorting prot 29.3 5.7E+02 0.012 28.4 11.0 56 16-82 176-233 (594)
91 PF01153 Glypican: Glypican; 29.0 3.4E+02 0.0073 31.7 10.2 82 546-630 111-194 (557)
92 KOG0964 Structural maintenance 28.9 1.2E+03 0.026 29.0 16.9 25 166-190 781-805 (1200)
93 PF10498 IFT57: Intra-flagella 28.0 8.3E+02 0.018 26.8 13.9 26 128-153 317-342 (359)
94 PF10267 Tmemb_cc2: Predicted 27.9 8.7E+02 0.019 27.0 18.6 61 61-121 232-295 (395)
95 PHA03395 p10 fibrous body prot 27.9 1.7E+02 0.0036 24.9 5.4 12 57-68 20-31 (87)
96 cd07633 BAR_OPHN1 The Bin/Amph 27.4 6.4E+02 0.014 25.2 13.6 83 67-163 4-91 (207)
97 PF13864 Enkurin: Calmodulin-b 26.7 3E+02 0.0065 23.8 7.2 72 30-103 2-75 (98)
98 PF10158 LOH1CR12: Tumour supp 25.8 5.3E+02 0.012 23.8 11.8 18 104-121 96-113 (131)
99 cd07634 BAR_GAP10-like The Bin 24.7 7.2E+02 0.016 24.9 15.3 74 84-163 18-91 (207)
100 PF11932 DUF3450: Protein of u 24.7 7.7E+02 0.017 25.3 16.9 84 26-113 21-105 (251)
101 PF06160 EzrA: Septation ring 24.6 1.2E+03 0.025 27.3 32.0 54 45-98 216-271 (560)
102 KOG2534 DNA polymerase IV (fam 24.5 2.2E+02 0.0047 30.3 6.7 116 76-209 13-132 (353)
103 KOG0517 Beta-spectrin [Cytoske 24.3 1.9E+03 0.041 29.7 21.6 96 10-113 398-501 (2473)
104 PRK10807 paraquat-inducible pr 23.8 8.9E+02 0.019 28.2 12.4 8 25-32 412-419 (547)
105 PRK00578 prfB peptide chain re 23.6 9.4E+02 0.02 26.4 11.8 61 74-135 25-85 (367)
106 PF11571 Med27: Mediator compl 22.7 1.3E+02 0.0029 25.7 4.1 49 322-376 4-52 (90)
107 PF00038 Filament: Intermediat 22.7 9.2E+02 0.02 25.4 17.7 67 27-93 166-237 (312)
108 COG5173 SEC6 Exocyst complex s 22.5 1.2E+03 0.027 26.9 12.3 98 13-121 16-113 (742)
109 PF10046 BLOC1_2: Biogenesis o 22.3 5.2E+02 0.011 22.4 12.7 66 48-113 7-77 (99)
110 KOG0018 Structural maintenance 22.0 1.2E+03 0.026 29.3 12.9 93 25-119 651-745 (1141)
111 PF14782 BBS2_C: Ciliary BBSom 22.0 1.1E+03 0.025 26.4 12.3 56 25-81 303-360 (431)
112 KOG2346 Uncharacterized conser 21.8 2.9E+02 0.0064 31.2 7.4 106 20-129 40-153 (636)
113 TIGR02132 phaR_Bmeg polyhydrox 21.6 6.4E+02 0.014 24.5 8.6 30 22-51 68-97 (189)
114 smart00787 Spc7 Spc7 kinetocho 21.3 7.9E+02 0.017 26.3 10.6 24 28-51 167-190 (312)
115 PF04799 Fzo_mitofusin: fzo-li 21.2 7.2E+02 0.016 24.1 9.1 20 36-55 101-120 (171)
116 PF08121 Toxin_33: Waglerin fa 21.1 37 0.00081 20.0 0.3 9 321-329 5-13 (22)
117 PF05739 SNARE: SNARE domain; 20.8 4E+02 0.0086 20.5 8.8 49 70-120 9-57 (63)
118 PF12718 Tropomyosin_1: Tropom 20.8 7E+02 0.015 23.3 13.5 33 89-121 73-106 (143)
119 TIGR03017 EpsF chain length de 20.4 1.2E+03 0.026 25.9 12.8 20 35-54 256-275 (444)
120 KOG0031 Myosin regulatory ligh 20.4 6.9E+02 0.015 23.9 8.4 74 625-701 52-144 (171)
121 KOG4514 Uncharacterized conser 20.3 8.1E+02 0.017 23.9 9.7 86 3-88 127-222 (222)
122 PF03474 DMA: DMRTA motif; In 20.2 1.1E+02 0.0023 21.9 2.4 27 667-693 6-33 (39)
123 PHA03386 P10 fibrous body prot 20.1 2.4E+02 0.0051 24.2 4.9 34 52-85 23-56 (94)
124 cd07638 BAR_ACAP2 The Bin/Amph 20.1 8.7E+02 0.019 24.2 13.0 82 67-163 4-85 (200)
No 1
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=100.00 E-value=6.8e-90 Score=796.53 Aligned_cols=526 Identities=29% Similarity=0.477 Sum_probs=267.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHhhhHhhHHHHHHHHHhhcccccccccCccchhhhhhhhh
Q 004593 176 FEDVDQTWETFEKTLWTHISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGDGVMATIANPRRSAKKSTTAM 255 (743)
Q Consensus 176 f~~v~~l~~~f~~~i~~~~~~~l~l~~~~p~~lv~a~rIIe~EE~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (743)
|++|+.+++.|+++||.++++++++++.+|++||+|+||||+||++|+++... ++..++.
T Consensus 1 F~~v~~l~~~~~~~l~~i~~~~l~~~~~~~~~lv~~~~Iie~EE~~D~~~~~~--------------------~~~~~~~ 60 (566)
T PF06046_consen 1 FEDVDELSDEFEKQLWSIVRNSLELVRSDPELLVRAVRIIEREERADERAAAR--------------------QEAQSFQ 60 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhHHHHHH--------------------hhhhccc
Confidence 89999999999999999999999999999999999999999999999998742 1122224
Q ss_pred hhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhhhHHHHHhcccccCCccchHHH
Q 004593 256 ASSKNLTQQKLKVQGKHYKDKCYEKIRKTVEGRFNKLLTELVF-EDLKAALEETRTIGGELGDIYDYVAPCFPPRYEIFQ 334 (743)
Q Consensus 256 ~~~~~~~~~~~~~~pk~~k~~~~~~l~~sv~~r~~~~~~~~~~-~d~~~~L~~~~~i~~dL~~v~~~~~~cfPp~~~I~~ 334 (743)
+++|.++...++++||+||++|+++|+.+|++||+.+...+.+ ..+...|+.++|+++||..|++.++|||||+|+||+
T Consensus 61 ~~~f~~~~~~~~~rpr~~r~~~~~~l~~sv~~~~~~~~~~~~~~~~l~~~l~~l~~~~~DL~~v~~~~~~cfPp~~~I~~ 140 (566)
T PF06046_consen 61 AARFRSINQGPPGRPRNWRQKFFEALRESVEERFEQAEEREENKSWLARHLEALRWVLEDLQVVKDDVVPCFPPEYDIFN 140 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhCcccCCCCChHHH
Confidence 5667777778899999999999999999999999966554433 234456888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHchhHHhHHhHhcCCCC-cccccccCCCCchhHHHHHHHHHHHHHHHH
Q 004593 335 LMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIGLGVD-ESLAQVCSESGAMDPLMNAYVERMQATTKK 413 (743)
Q Consensus 335 ~y~~~YH~~l~~~L~~l~~~~~~l~~~~ll~ll~Wv~~Y~~~m~~l~i~-~~~l~~ll~~~~~~~L~~~Y~~~~~~~l~e 413 (743)
+|+.+||++++++|+++. .+++++++++.||+|+..|++.|+..++. .+.++|+|+++..+.|+++|++.++.+|++
T Consensus 141 ~y~~~YH~~l~~~l~~l~--~~~l~~~~ll~ll~W~~~Y~~~m~~~~l~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~e 218 (566)
T PF06046_consen 141 TYVSMYHNALSDHLQELI--SPDLEANDLLSLLSWVNTYPSIMGHPDLAIKEQLGPLLPDEKLEELEDDYLSRIQKKMKE 218 (566)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--cCCCCHHHHhhheechhhChHhhcCCcccchhhccCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 67999999999999977799988866555 677899999999999999999999999999
Q ss_pred HHHHHHhhcc-----cCCCCCCCCCcccccchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004593 414 WYLNILDADK-----VQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQVMIDFQAAERQRLAEP 488 (743)
Q Consensus 414 w~~~~l~~e~-----~~~Pe~d~dg~~~t~~~vdlfqmi~q~l~~a~~~~~~~~~~~v~~~~~~~l~~f~~~y~~~l~~~ 488 (743)
|+.|+++.|. +.+|+.|.+|+|+|++|+||||||+||+++|.....+.++..++..+...+..|+..+.+.++++
T Consensus 219 W~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~~ 298 (566)
T PF06046_consen 219 WMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVLEELANFLKSYQDAWQEFKEEH 298 (566)
T ss_dssp HHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 67999999999999999999999999999997666554443444444444444444444443322
Q ss_pred C-----------CCCCcchhhheecccHhhHHHHHHHHHHhhccCCcchHHH-----------------HHHHHHHHHHh
Q 004593 489 A-----------SEIGLEPLCAIINNNLRCYDLAMELSTSTIESLPPNYAEQ-----------------EALFHLISVIF 540 (743)
Q Consensus 489 ~-----------~~~~~~~liA~~N~~~~~~e~~~~l~~~~~~~v~~~~~~~-----------------~~~~~l~~~if 540 (743)
. .+++.+|+||++|||.+|+++++++...+.+.+++.|... .|+..|++.||
T Consensus 299 ~~~~~~~~~~~~~~~~~eyliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if 378 (566)
T PF06046_consen 299 FKDRSSVKPKENPPGYLEYLIAVANNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIF 378 (566)
T ss_dssp HHHHHHHHHCC--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccccccccchHHHHHHHhccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2667899999999999999999999999988887555431 79999999999
Q ss_pred CChhhHHHHhhccccccCCchhhhhHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcC-----chH
Q 004593 541 DDPEVQQLFLKLYSKEWSDGQVTEYILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLLSQKNYI-----KEI 615 (743)
Q Consensus 541 ~d~~l~p~~~~lft~~W~~~~~v~~I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~-----~~~ 615 (743)
.| ++|+|+++||++||++++|++||.|++||++||+.||+|++|+.|+.++++++|.+|+++|+++|..+ .+.
T Consensus 379 ~D--l~p~~~~Lft~~W~~~~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~ 456 (566)
T PF06046_consen 379 ND--LKPHFKKLFTKKWYSGEAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKE 456 (566)
T ss_dssp HC--THHHHCTTTSGGGCTS-HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCC
T ss_pred HH--hHHHHHHhCcCcCcCcchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHH
Confidence 98 99999999999999998899999999999999996699999999999999999999999999987533 478
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhhhhhhhhHHHHHHhhccCChhhHHHHHHHHhhhCCCCCHHHHHHHHHHhcCCChHh
Q 004593 616 TIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALREAIPRKD 695 (743)
Q Consensus 616 ~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL~~R~Dl~r~~ 695 (743)
+|++|++|++.+++||.++++.+.+.+.+.+|+.|+++++++|++++.+++.+|++.|||++.+||++||.+|||++|++
T Consensus 457 ~a~~i~~D~~~l~~~F~~~~~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R~D~~r~~ 536 (566)
T PF06046_consen 457 AAERIRRDAEQLKSFFSKLGSKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALRGDLSRSE 536 (566)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT-TT--HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHH
Confidence 99999999999999999999877788999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCcccccc
Q 004593 696 AKEIVQECKEIYENSLINGNPPKPGFVFPRV 726 (743)
Q Consensus 696 ~~~il~~~~~~~~~~~~~~~~~~~~~iFs~i 726 (743)
++++++.+++...+...+++||.| ||||+|
T Consensus 537 ~~~il~~~~~~~~~~~~~~~~~~~-~ifs~i 566 (566)
T PF06046_consen 537 VKEILEILREIIKSYPANAEPPPP-TIFSRI 566 (566)
T ss_dssp HHHHHHHHHHHHHHHHCCCH------GGGG-
T ss_pred HHHHHHHHHHHhhccccccCCCCC-CCCCCC
Confidence 999999999998888654444555 599986
No 2
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-82 Score=707.57 Aligned_cols=633 Identities=30% Similarity=0.469 Sum_probs=537.9
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004593 12 EAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQEC 91 (743)
Q Consensus 12 ~~a~~~v~~ll~~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~ 91 (743)
.+|+..|++++++|.+|++|+.++.+..+++.+++++||++++.|.++++.|+..+..+..+++.
T Consensus 2 ~aal~~v~~ll~~~~~l~~l~~~~~r~~~~~~~~ea~lkt~~~~~~~~v~~~l~~l~~~~~~~~~--------------- 66 (667)
T KOG2286|consen 2 DAALTQVADLLRRPSSLEKLPSIKARAAREKEAVEAQLKTMVQKQYEGVEKGLKNLSTSETDIKG--------------- 66 (667)
T ss_pred CchhhHHHHHHhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------------
Confidence 47899999999999999999999999999999999999999999999999999999998888871
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcC---ChhHHHHHHHHHHHHhHHHHHHHHh----hc
Q 004593 92 QTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGD---DKELVNTYERLTALDGKRRFALAAA----AS 164 (743)
Q Consensus 92 ~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~---~~nLL~ah~~L~~Le~~rd~~l~~~----~~ 164 (743)
..++..++++++.++..+.+...++.. +.+|+.||.+|++++..||+++++. .+
T Consensus 67 -------------------~~~~~~n~~~~~n~~~~~~e~~~~~~~~~~~~~l~~a~~~l~dl~~sr~~l~~e~~~~aa~ 127 (667)
T KOG2286|consen 67 -------------------YATAMSNLKHIFNLVADVQEIRMLLDAEKAKDELLLAHDHLLDLEPSRDELLYEVHVMAAE 127 (667)
T ss_pred -------------------HHHHHHHhhhhhhchhHHHHHHHHHhcccccchhhhcCHHHHHHHhhhHHHHHHHHHHhHh
Confidence 233345556677777666666655533 3469999999999999999999764 34
Q ss_pred ChhH-HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHhhhHhhHHHHHHHHHhhcccccccccC
Q 004593 165 HIDE-VGRLREYFEDVDQTWETFEKTLWTHISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGDGVMATIAN 243 (743)
Q Consensus 165 ~~~~-~~~l~~~f~~v~~l~~~f~~~i~~~~~~~l~l~~~~p~~lv~a~rIIe~EE~~D~~~~~~~~~~~~~~~~~~~~~ 243 (743)
...| ..++.++|+.++.+++.|++.+|.++.++++++++ |+.+|+|+||||+||+.|+++... +
T Consensus 128 ~~~D~~~~~~~~f~~v~~~~~ef~K~l~~~~~~~~~~~k~-pe~~v~alrIVe~eE~~D~~~~~~---~----------- 192 (667)
T KOG2286|consen 128 AAGDAQTTLRNDFSSVDSASQEFEKNLWGILSRILEMVKS-PEKLVQALRIVEREEIEDEQAMEA---R----------- 192 (667)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHhc---c-----------
Confidence 4444 55677799999999999999999999999999999 999999999999999999988641 0
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHH-Hh-hhhHHH-HHHHHH-HhhhhHHHHH
Q 004593 244 PRRSAKKSTTAMASSKNLTQQKLKVQGKHYKDKCYEKIRKTVEGRFNKLLTE-LV-FEDLKA-ALEETR-TIGGELGDIY 319 (743)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~pk~~k~~~~~~l~~sv~~r~~~~~~~-~~-~~d~~~-~L~~~~-~i~~dL~~v~ 319 (743)
..+. ..|++|||+|++ +....+.+..|..+.... .. +.-|.. .++..+ ++++||..++
T Consensus 193 ------~~~s----------~~~~~r~~~~~s--~~~~~r~vatR~~~~~~~~~a~n~~w~~~~~e~~r~~i~EdL~~~~ 254 (667)
T KOG2286|consen 193 ------PGNS----------SVPNPRPREWKS--LTRMSRTVATRVEGRQGKMRALNKEWQVRLLEVLRFVIREDLRVAK 254 (667)
T ss_pred ------cccC----------CCCCCCCchHHH--HHHHhhhHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0110 168889999999 666666788877766422 11 111222 223333 9999999999
Q ss_pred hcccccCCccchHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHchhH-HhHHhHhcCCCCcc-cccccCCCCchh
Q 004593 320 DYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVV-EYQDNLIGLGVDES-LAQVCSESGAMD 397 (743)
Q Consensus 320 ~~~~~cfPp~~~I~~~y~~~YH~~l~~~L~~l~~~~~~l~~~~ll~ll~Wv~-~Y~~~m~~l~i~~~-~l~~ll~~~~~~ 397 (743)
..++|||||||+||..|+++||++++.+++.+. +.+++..+++.++.|+. .|++.....+++.. .++|.+.++.+.
T Consensus 255 ~~l~~cfpp~~~if~~~l~~Yh~~ls~ll~dl~--s~~l~~~eil~llawV~~~~~~~~l~~~~~~~~~l~p~l~~~~v~ 332 (667)
T KOG2286|consen 255 RVLVPCFPPHYNIFSAYLELYHQALSDLLRDLA--SEALELREILQLLAWVRNEYYTPLLQLNVDVLRALGPLLRPKHVV 332 (667)
T ss_pred HhhcccCCchhHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHhcChhhhccchhhhhhcCccChhHHH
Confidence 999999999999999999999999999999998 66899999999999999 47765443333333 378999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCCCCCcccccchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 004593 398 PLMNAYVERMQATTKKWYLNILDADKV-----QPPKRTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQ 472 (743)
Q Consensus 398 ~L~~~Y~~~~~~~l~ew~~~~l~~e~~-----~~Pe~d~dg~~~t~~~vdlfqmi~q~l~~a~~~~~~~~~~~v~~~~~~ 472 (743)
.|++.|++....++++|+.|+.+.|.. .+|+.|.+|+|+|++|+++|||+.++++++..++.+++. .+...++.
T Consensus 333 ~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p~~~fqmi~q~l~~~~~~~~Dl~~-~~~~~~~~ 411 (667)
T KOG2286|consen 333 ALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRDEEGYLYTPGPVIFFQMITQQLQVAAATSSDLSG-KILRSLLS 411 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCcccHHHHHhhHHHHHHHHhhHHHHHH-HHHHHHHH
Confidence 999999999999999999999998853 789999999999999999999999999999999998886 88899999
Q ss_pred HHHHHHHHHHHHhc-------CCCCCCCcchhhheecccHhhHHHHHHHHHHhhccCC---cchHH--HHHHHHHHHHHh
Q 004593 473 VMIDFQAAERQRLA-------EPASEIGLEPLCAIINNNLRCYDLAMELSTSTIESLP---PNYAE--QEALFHLISVIF 540 (743)
Q Consensus 473 ~l~~f~~~y~~~l~-------~~~~~~~~~~liA~~N~~~~~~e~~~~l~~~~~~~v~---~~~~~--~~~~~~l~~~if 540 (743)
++..|++.|.+... +..+.++.+|+||++|||..|.++..++.+.+ +.++ ..|.+ ..++..|++.+|
T Consensus 412 ~v~~f~~~~~~~~~~~~e~~~~~~~~~l~~y~iA~~N~~~~~a~~~~~~~~~~-d~~~~~l~~~~~i~~~~~~~l~e~~~ 490 (667)
T KOG2286|consen 412 EVPSFARNYPKAQDEDQESHRREQPEGLREYLIANINNNLKMAMLMVNLKSKY-DTLKGLLDGFIEIAKHGVSGLLEEIF 490 (667)
T ss_pred HhHHHHHHHHHhHHHHHHhchhcccccHHHHHHHHHhchhHHHHHHHHHHhcc-chhHHHhHHHHHHHHhHHHHHHHHHH
Confidence 99999998876532 22245568999999999999999999988776 3222 12222 267889999999
Q ss_pred CChhhHHHHhhccccccCCchhhhhHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHH
Q 004593 541 DDPEVQQLFLKLYSKEWSDGQVTEYILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLLSQKNYIKEITIERM 620 (743)
Q Consensus 541 ~d~~l~p~~~~lft~~W~~~~~v~~I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i 620 (743)
.| |+|+|+.+||++|+.|++++.||.|++||+.||+.++.+ +|..|+++++.++|++|+++|+++|.++. +++++|
T Consensus 491 ~d--~~~~~~~lf~~~W~~g~~~~~Iv~T~~dy~~D~~~~~~~-~f~~fi~e~~~~~v~~Yl~~l~~kr~~~~-~~~~~i 566 (667)
T KOG2286|consen 491 LD--LQPLLNKLFTKEWCAGSVTENIVATLDDYLPDFKELMGE-YFVRFIEEASLELVIEYLRALSKKRASIQ-ELIEKI 566 (667)
T ss_pred HH--HHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHH
Confidence 88 999999999999999989999999999999999975555 59999999999999999999999998755 999999
Q ss_pred HHHHHHHHHHHhcccchhhhhhhhhhHHHHHHhhccCChhhHHHHHHHHhhhCCCCCHHHHHHHHHHhcCCChHhHHHHH
Q 004593 621 REDEEAIIEAFREYVSVNKVESKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALREAIPRKDAKEIV 700 (743)
Q Consensus 621 ~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL~~R~Dl~r~~~~~il 700 (743)
+.|++.++.||.+|++ +++++.+.+..|++++...|++.|.++|++|+..||||+.+||++||.+|||+++++++.|+
T Consensus 567 ~~d~~~~~~~f~~~~~--~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k~i~ 644 (667)
T KOG2286|consen 567 KSDAETLYHFFRKYGS--DVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKKKIV 644 (667)
T ss_pred HhhHHHHHHHHHHhCc--chhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCccccccc
Q 004593 701 QECKEIYENSLINGNPPKPGFVFPRVK 727 (743)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~iFs~i~ 727 (743)
+.+++...+...+ . ++|+.+.
T Consensus 645 ~~~~~~~~~~~~~----~--~~~~~~~ 665 (667)
T KOG2286|consen 645 DILKESMGSQEPD----R--PLFSDFV 665 (667)
T ss_pred HHHHHHHhhhCcC----C--CCccccC
Confidence 9999998776432 3 2666654
No 3
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-77 Score=625.37 Aligned_cols=692 Identities=17% Similarity=0.225 Sum_probs=581.8
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004593 13 AAVREVAKLLTLPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQ 92 (743)
Q Consensus 13 ~a~~~v~~ll~~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~ 92 (743)
.|+..+.+.+++|-+|+++..++.++.+ ..+|.+.....--.+.. .|....+.+.++.....++.++|+..+
T Consensus 3 ~~l~q~~~~~~~d~~l~~v~Di~eq~~k-----f~~l~~h~~~~~~e~~~---~ln~~~n~~~~i~~~~~e~~~l~e~~r 74 (742)
T COG5173 3 KALTQLSETLRHDSDLQTVLDIIEQSTK-----FEALEHHDGNLSAEISK---CLNNILNISKRIYGLEEELKSLVEGKR 74 (742)
T ss_pred hHHHHHHHHhcCchHHHHHHHHHHHHHH-----HHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 5788999999999999999999999887 23333332222222221 577888999999999999999999999
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhh-------cCChhHHHHHHHHHHHHhHHHHHHHHhh-c
Q 004593 93 TLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSL-------GDDKELVNTYERLTALDGKRRFALAAAA-S 164 (743)
Q Consensus 93 ~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l-------~~~~nLL~ah~~L~~Le~~rd~~l~~~~-~ 164 (743)
.+|..|+-+-+++..++|...|-.+..+|..+....+..++++ .+.||||++|+.|..+|+||.++..++. +
T Consensus 75 ~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~~~d~ied~l~~~l~eD~dmPnLl~~H~kl~~ardF~eq~~~~a~e~ 154 (742)
T COG5173 75 RNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVEFSDRIEDILGTVLTEDIDMPNLLAYHTKLYDARDFGEQLDMYATEI 154 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHccHHHHhHHHHHHHhhc
Confidence 9999999999999999999998887778877777777777777 3569999999999999999999987765 6
Q ss_pred ChhHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhcC-CchhhHHHHHHHhhhHhhHHHHHHHHHhhcccccccccC
Q 004593 165 HIDEVGRLREYFEDVDQTWETFEKTLWTHISNFYKLSKES-PQTLVRALRVVEMQEILDQQLAEEAAEAEGDGVMATIAN 243 (743)
Q Consensus 165 ~~~~~~~l~~~f~~v~~l~~~f~~~i~~~~~~~l~l~~~~-p~~lv~a~rIIe~EE~~D~~~~~~~~~~~~~~~~~~~~~ 243 (743)
+.|+..++.+.|+.++.++..|++.+..+..++++.|+.+ -...++.++|+|.||++|+....- | ++.+.+|
T Consensus 155 ~~D~~~tv~k~fs~l~~~s~~Fd~lvl~~~~~iie~vksghi~~~~~ifkIve~EE~~De~~~~I---r---daks~lp- 227 (742)
T COG5173 155 SHDDYVTVNKAFSTLEKNSLDFDALVLEISEEIIENVKSGHIEAMDKIFKIVEKEEARDELTRKI---R---DAKSELP- 227 (742)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHH---H---HHHhcCC-
Confidence 6677889999999999999999999999999999999986 588899999999999999876531 0 0000111
Q ss_pred ccchhhhhhh-hhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHHhcc
Q 004593 244 PRRSAKKSTT-AMASSKNLTQQKLKVQGKHYKDKCYEKIRKTVEGRFNKLLTELVFEDLKAALEETRTIGGELGDIYDYV 322 (743)
Q Consensus 244 ~~~~~~~~~~-~~~~~~~~~~~~~~~~pk~~k~~~~~~l~~sv~~r~~~~~~~~~~~d~~~~L~~~~~i~~dL~~v~~~~ 322 (743)
+++.+ .+.+-.+-.+.....+||+||+.....|..||.+.|.+.+..+.+++ ..+.++.|+++||..++..+
T Consensus 228 -----~SQD~P~~~~~~gmyr~~~~~~~r~lk~f~i~~i~~sv~e~F~r~r~~yi~d~--sgelnmDfIf~dL~~i~e~i 300 (742)
T COG5173 228 -----KSQDNPVLKEFYGMYRMYATRKTRKLKDFVIKSIEVSVKEKFDRLRNEYIFDN--SGELNMDFIFKDLSFIRENI 300 (742)
T ss_pred -----CcCCCcchHHHHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHhcC--cchhhhHHHHHHHHHHHHHc
Confidence 11111 01122233333456789999999999999999999999988765533 44567789999999999999
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHchhHHhHHhHh-cCCCCcccccccCCCCchhHHHH
Q 004593 323 APCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLI-GLGVDESLAQVCSESGAMDPLMN 401 (743)
Q Consensus 323 ~~cfPp~~~I~~~y~~~YH~~l~~~L~~l~~~~~~l~~~~ll~ll~Wv~~Y~~~m~-~l~i~~~~l~~ll~~~~~~~L~~ 401 (743)
..||||+|||+..|...|.+|+...+.+.+ ..++++.++|.+++|+.+|++.++ +++...+.++|-++++.-+.|..
T Consensus 301 ~~~~pp~~NI~~~y~~~YqecL~~L~td~v--~~~~~a~~iL~ii~f~~~y~~t~e~~f~f~~dev~~~l~d~e~g~L~~ 378 (742)
T COG5173 301 SLSFPPFDNILTLYHNNYQECLLKLFTDEV--TERLDAGEILAIIEFVGNYYNTIESKFNFIADEVGGRLLDNETGELLE 378 (742)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHHHhCCccHHHhcccccCCcchHHHH
Confidence 999999999999999999999999999988 569999999999999999999997 89999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc------ccCCCCCCCCCcccccchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 004593 402 AYVERMQATTKKWYLNILDAD------KVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQVMI 475 (743)
Q Consensus 402 ~Y~~~~~~~l~ew~~~~l~~e------~~~~Pe~d~dg~~~t~~~vdlfqmi~q~l~~a~~~~~~~~~~~v~~~~~~~l~ 475 (743)
+|+++.+.+|+||+.|+.+.| |+.||+.|+||.|++++.+.+||||.||+.+++-.+......-|+..+...|.
T Consensus 379 ~Yt~l~~~Kl~EWv~nl~~~evd~F~~R~~ep~~Dsdg~l~l~Gt~~~fQmitqQ~e~ia~tn~sdvvgiV~~~i~~~~t 458 (742)
T COG5173 379 KYTKLAQEKLKEWVMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTNRSDVVGIVFAHITRTIT 458 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCcCccCccHHHHHHHHHHHhhhhhcCCccchhhhhHHHHHHHHH
Confidence 999999999999999999877 67899999999999999999999999999999987776666567778888999
Q ss_pred HHHHHHHHHhc---------CC--CCC-CCcchhhheecccHhhHHHHHHHHHHhhccCCcchHHH--------------
Q 004593 476 DFQAAERQRLA---------EP--ASE-IGLEPLCAIINNNLRCYDLAMELSTSTIESLPPNYAEQ-------------- 529 (743)
Q Consensus 476 ~f~~~y~~~l~---------~~--~~~-~~~~~liA~~N~~~~~~e~~~~l~~~~~~~v~~~~~~~-------------- 529 (743)
+++..|+..+. +| .+| +..+|++|+.|++++|++|+..+..+..+++++.|..+
T Consensus 459 k~q~~wks~l~ee~~kq~~~npEs~~p~Gl~eyliav~Nd~lK~A~y~~~~~sntfeLitseye~d~~~~lgkTvDgfi~ 538 (742)
T COG5173 459 KYQEIWKSNLVEEMDKQFKSNPESSSPAGLEEYLIAVGNDGLKIAQYITSLPSNTFELITSEYENDEVKELGKTVDGFID 538 (742)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHHHcCCcchHHHHHHhcchhhhhhhhHHHHHHHHHHhcccchhHHH
Confidence 99999986652 12 234 34699999999999999999999888777777777543
Q ss_pred ---HHHHHHHHHHhCChhhHHHHhhccccccCCchhhhhHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 004593 530 ---EALFHLISVIFDDPEVQQLFLKLYSKEWSDGQVTEYILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLL 606 (743)
Q Consensus 530 ---~~~~~l~~~if~d~~l~p~~~~lft~~W~~~~~v~~I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~ 606 (743)
.+...|+..|+.| |+|++..+|++.||.|+.+..|+.|++||+.||+.||.+..|..|++++..+++..|+++|.
T Consensus 539 I~~~s~~~l~~~i~~d--~~pa~~~iF~~~Wy~gS~~k~IvdTl~dyl~D~~~~M~~~lFv~Fi~e~s~~~vi~yl~~l~ 616 (742)
T COG5173 539 ILKASNTFLAEFIIYD--CQPAIDKIFTDEWYGGSVTKVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQLG 616 (742)
T ss_pred HHhhhhHHHHHHHHHh--hhhhHHHhcCccccccchHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456678889998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcC-chHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhHHHHHHhhccCChhhHHHHHHHHhhhCCCCCHHHHHHHH
Q 004593 607 SQKNYI-KEITIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLV 685 (743)
Q Consensus 607 k~~~~~-~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL 685 (743)
.++..+ .+.|.+.|++|...+...|.+|+.+++++..+.++..+.-.+.+.|.+.+..+|+.|...|||++...+++||
T Consensus 617 ~k~a~~~~~na~~~lksD~~~~y~~f~~y~d~e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~lkeiYwD~~~sli~~Il 696 (742)
T COG5173 617 RKRASIAEENASRTLKSDHTKLYEMFSGYGDPEDVKTTLSPILKIIPLMDTRNDDLFIVEVKSLKEIYWDIKKSLIKTIL 696 (742)
T ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHhccchHHHHHHHH
Confidence 888754 3568999999999999999999998888888888887777777788899999999999999999999999999
Q ss_pred HHhcCCChHhHHHHHHHHHHHHHhhccCCCCCCCCcccccccccccc
Q 004593 686 ALREAIPRKDAKEIVQECKEIYENSLINGNPPKPGFVFPRVKCLSAS 732 (743)
Q Consensus 686 ~~R~Dl~r~~~~~il~~~~~~~~~~~~~~~~~~~~~iFs~i~~~~~~ 732 (743)
.+|.|++++-++......+.. +...+......+|+||++..++.|
T Consensus 697 k~R~Dl~~sIiqk~t~~~r~~--~~~~~v~tsrepTifsr~~~lsgs 741 (742)
T COG5173 697 KKRQDLTESIIQKKTLADRLK--ECFTDVATSREPTIFSRLLNLSGS 741 (742)
T ss_pred HhhhhhHHHHHHHHHHHHHHH--hhccccccccCchHHHHHHHhhcC
Confidence 999999999665555544422 222233233333599999998876
No 4
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-44 Score=391.60 Aligned_cols=621 Identities=16% Similarity=0.214 Sum_probs=501.7
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004593 12 EAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQEC 91 (743)
Q Consensus 12 ~~a~~~v~~ll~~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~ 91 (743)
-..+.+++++|+.+++|..|+.+++++..+..++|++|.+.|+.|-+.++.|-+.|.+|+..+.++.+.+.+|++.++.+
T Consensus 19 f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~T 98 (793)
T KOG2180|consen 19 FNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAEST 98 (793)
T ss_pred hhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhh-HHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhh-----cCChhHHHHHHHHH-HHHhHHHHHHHHhhc
Q 004593 92 QTLIENH-NQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSL-----GDDKELVNTYERLT-ALDGKRRFALAAAAS 164 (743)
Q Consensus 92 ~~~v~~~-~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l-----~~~~nLL~ah~~L~-~Le~~rd~~l~~~~~ 164 (743)
+.||+++ ++||+|+.|++||+++|++++||+++..++++++.|+ ++..++|+|..+|. .+..||+
T Consensus 99 e~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~-------- 170 (793)
T KOG2180|consen 99 EAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKS-------- 170 (793)
T ss_pred HHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcc--------
Confidence 9999999 9999999999999999999999999999999999999 55678999999888 5556555
Q ss_pred ChhHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhc-CC----chhhHHHHHHHhhhHhhHHHHHHHHHhhcccccc
Q 004593 165 HIDEVGRLREYFEDVDQTWETFEKTLWTHISNFYKLSKE-SP----QTLVRALRVVEMQEILDQQLAEEAAEAEGDGVMA 239 (743)
Q Consensus 165 ~~~~~~~l~~~f~~v~~l~~~f~~~i~~~~~~~l~l~~~-~p----~~lv~a~rIIe~EE~~D~~~~~~~~~~~~~~~~~ 239 (743)
...|..+-+.|+.+...|..||...+.+.++.-.. ++ ..|-.+|+++..-
T Consensus 171 ----v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~l--------------------- 225 (793)
T KOG2180|consen 171 ----VDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDAL--------------------- 225 (793)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHh---------------------
Confidence 77888999999999999999999999999976554 22 3456777777321
Q ss_pred cccCccchhhhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHH-HHHHhhhhH
Q 004593 240 TIANPRRSAKKSTTAMASSKNLTQQKLKVQGKHYKDKCYEKIRKTVEGRFNKLLTELVFED---LKAALE-ETRTIGGEL 315 (743)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pk~~k~~~~~~l~~sv~~r~~~~~~~~~~~d---~~~~L~-~~~~i~~dL 315 (743)
.+.+|. +.|+..+...++++..-|.+.+ ++..++ ++.|++.-|
T Consensus 226 ---------------------------epsvre------elIkwf~~qqL~ey~~IF~en~E~a~LDkidrRY~wfKr~L 272 (793)
T KOG2180|consen 226 ---------------------------EPSVRE------ELIKWFCSQQLEEYEQIFRENEEAASLDKLDRRYAWFKRLL 272 (793)
T ss_pred ---------------------------CCccHH------HHHHHHHHHHHHHHHHHHhccHhhhhhhhHHHHHHHHHHHH
Confidence 112444 7888888888888876665422 444454 368999999
Q ss_pred HHHHhcccccCCccchHHHHHHHHHHHHHHHHHHHHhh-ccCCCChhhHHHHHchhHHhHHhHh-cCCC-------Ccc-
Q 004593 316 GDIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSD-RANELTNIEILKVTGWVVEYQDNLI-GLGV-------DES- 385 (743)
Q Consensus 316 ~~v~~~~~~cfPp~~~I~~~y~~~YH~~l~~~L~~l~~-~~~~l~~~~ll~ll~Wv~~Y~~~m~-~l~i-------~~~- 385 (743)
....+...|.||++|++-.+.+..||+.+++.|..|+. +..+++..-++..|+-+.+|++.+. +|+- ..+
T Consensus 273 ~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns 352 (793)
T KOG2180|consen 273 RDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRKKEPDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNS 352 (793)
T ss_pred HHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhhhCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccc
Confidence 99999999999999999999999999999999999984 3468999999999999999999884 6731 111
Q ss_pred cccc-------cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCC-CCCCcccccchhHHHHHHHHHHHHHhh
Q 004593 386 LAQV-------CSESGAMDPLMNAYVERMQATTKKWYLNILDADKVQ-PPKR-TEDGKLYTPAAVDLFRILGEQVQIVRD 456 (743)
Q Consensus 386 ~l~~-------ll~~~~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~-~Pe~-d~dg~~~t~~~vdlfqmi~q~l~~a~~ 456 (743)
...| ...+.+++++++.|++...+++.+.+++.+..+++. +|.. .+.+..++|++.|+|+.++.++.-+.+
T Consensus 353 ~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~Ykkcltq~~~ 432 (793)
T KOG2180|consen 353 QFEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVAYKKCLTQCSE 432 (793)
T ss_pred ccccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccCccHHHHHHHHHHHHHHHHH
Confidence 1100 122357899999999999999999999999998864 3422 345678899999999999999966665
Q ss_pred c-ch-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------C------------CC----CcchhhheecccHhh
Q 004593 457 N-ST-DVMLYRISLAIIQVMIDFQAAERQRLAEPA-----------S------------EI----GLEPLCAIINNNLRC 507 (743)
Q Consensus 457 ~-~~-~~~~~~v~~~~~~~l~~f~~~y~~~l~~~~-----------~------------~~----~~~~liA~~N~~~~~ 507 (743)
. .. +++. ... ..|..+++.|...+-.+. + .. .+.-+|++.+...+|
T Consensus 433 Ls~n~dpl~-~~~----~~f~k~LreYa~kil~~~lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~~~lst~e~~ 507 (793)
T KOG2180|consen 433 LSENNDPLI-ALL----AVFSKWLREYAQKILLGNLPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDICCILSTAEYC 507 (793)
T ss_pred hccCCchHH-HHH----HHHHHHHHHHHHHHhhccCCcccccccCchhhhHHHhhhhhhhcccHHHHHHHHHHHHHHHHH
Confidence 3 33 4554 322 277888888875431110 0 00 124478999999999
Q ss_pred HHHHHHHHHHhhccCCcchHHH---------------HHHHHHHHHHhCChhhHHHHhhccccccCC----ch---hhhh
Q 004593 508 YDLAMELSTSTIESLPPNYAEQ---------------EALFHLISVIFDDPEVQQLFLKLYSKEWSD----GQ---VTEY 565 (743)
Q Consensus 508 ~e~~~~l~~~~~~~v~~~~~~~---------------~~~~~l~~~if~d~~l~p~~~~lft~~W~~----~~---~v~~ 565 (743)
..++.++.+++.+.+...|.+. .+.+.+++...+- |.|.+..+....|.. || .++.
T Consensus 508 ~~tt~qle~kl~e~~~~~~~~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a--~~~~lt~msk~~~~~l~~vgDQss~v~s 585 (793)
T KOG2180|consen 508 LATTIQLEKKLKEIVDASYIKGVSFSEEREVFSSKISVSLQFLVQDLENA--LDPDLTPMSKMQWQNLEGVGDQSSYVSS 585 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHHHHh--hCcccChHHHHHHHHhcCccccchhhHH
Confidence 9999999998877654444321 4666677776663 777777888778975 33 3788
Q ss_pred HHhhHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhcccchh-----
Q 004593 566 ILPTFSDYFADVKMFVEER--SFRRFVEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVN----- 638 (743)
Q Consensus 566 I~~Tl~dy~~d~~~~L~~~--~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~----- 638 (743)
++.-+..+.++++..+.+. ||..||..++..|++.++..+++++. ....+++|+..|.+.++++|..+|+-.
T Consensus 586 ~~~h~~q~~~~i~~~~~~~r~~f~~fc~r~a~~f~~kf~~~l~R~k~-~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~ 664 (793)
T KOG2180|consen 586 LNFHLSQFVPLIRDALALDRKYFAQFCVRLAASFIPKFLNVLFRAKP-ISVVGAEQLLLDTESLKDALLTLPPLRSLFND 664 (793)
T ss_pred HHHHHHhhhHHHHHHhccccchHHHhhHHHHhhcchHHHHHHHHhhh-HhhhHHHHHHHHHHHHHHHhhcCCchhhhccc
Confidence 8888888877777665554 79999999999999999999999987 478999999999999999999998722
Q ss_pred ------hhhhhhhhHHHHHHhhc--cCChhhHHHHHHHHhhhCCCCCHHHHHHHHHHhcCCChHhHHHHHHHHHHHHHhh
Q 004593 639 ------KVESKVRVLTDMRELAS--ANSVDAFALIYTNVLEHQPDCPPEVVERLVALREAIPRKDAKEIVQECKEIYENS 710 (743)
Q Consensus 639 ------~v~~~~~~l~~l~~ll~--~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL~~R~Dl~r~~~~~il~~~~~~~~~~ 710 (743)
.+..-+..+++|++++- +++++.|...|-.| -||.+....+.||.++| ++|.+.-.++..++...+..
T Consensus 665 ~~~y~~~~~~~m~~~e~iiK~lm~p~~~~~~f~e~yikL---~~~~~~a~~~~vLelKg-v~r~d~~~~l~~~~~~~~~~ 740 (793)
T KOG2180|consen 665 KRPYKRHVDNNMTQAEMIIKVLMTPLDPADDFYEQYIKL---LPDPDSAEWQKVLELKG-VKRDDALWKLLWFAYNLEAD 740 (793)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh---cCCCcHHHHHHHHHhcC-CcHHHHHHHHHHHHHhcccC
Confidence 13445778889999874 56777777766655 59999999999999997 99999999999999776554
No 5
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=99.96 E-value=2.7e-27 Score=256.70 Aligned_cols=345 Identities=16% Similarity=0.233 Sum_probs=286.7
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004593 13 AAVREVAKLLTLPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQ 92 (743)
Q Consensus 13 ~a~~~v~~ll~~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~ 92 (743)
.|+.+|+++||+|++|..|+.+..++..++..+|..|+..|++|......|-+.|.+|+..|++|...+.+|+..+++++
T Consensus 5 dpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE 84 (383)
T PF04100_consen 5 DPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESE 84 (383)
T ss_pred CHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhh-HHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcC-----ChhHHHHHHHHH-HHHhHHHHHHHHhhcC
Q 004593 93 TLIENH-NQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGD-----DKELVNTYERLT-ALDGKRRFALAAAASH 165 (743)
Q Consensus 93 ~~v~~~-~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~-----~~nLL~ah~~L~-~Le~~rd~~l~~~~~~ 165 (743)
.+|.++ ++||+|+.|++||+.+|++|++|+++...+++++.++.. ..++|.|...|+ .+..|++
T Consensus 85 ~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yks--------- 155 (383)
T PF04100_consen 85 QMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKS--------- 155 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccC---------
Confidence 999999 999999999999999999999999999999999999854 457888888877 4444433
Q ss_pred hhHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhc-C----CchhhHHHHHHHhhhHhhHHHHHHHHHhhccccccc
Q 004593 166 IDEVGRLREYFEDVDQTWETFEKTLWTHISNFYKLSKE-S----PQTLVRALRVVEMQEILDQQLAEEAAEAEGDGVMAT 240 (743)
Q Consensus 166 ~~~~~~l~~~f~~v~~l~~~f~~~i~~~~~~~l~l~~~-~----p~~lv~a~rIIe~EE~~D~~~~~~~~~~~~~~~~~~ 240 (743)
++.+..+...++.+...|..+|...+..++..... + +..|..||.|++.-+ .
T Consensus 156 ---i~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~---~----------------- 212 (383)
T PF04100_consen 156 ---IPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALG---P----------------- 212 (383)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcC---c-----------------
Confidence 78899999999999999999999999998732221 2 245778888884421 0
Q ss_pred ccCccchhhhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHH-HHHHhhhhHH
Q 004593 241 IANPRRSAKKSTTAMASSKNLTQQKLKVQGKHYKDKCYEKIRKTVEGRFNKLLTELVFE---DLKAALE-ETRTIGGELG 316 (743)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pk~~k~~~~~~l~~sv~~r~~~~~~~~~~~---d~~~~L~-~~~~i~~dL~ 316 (743)
.+|+ +.|...+...+.++...|... .++..++ ++.|+.+-|.
T Consensus 213 -------------------------------~~r~---~li~wf~~~qL~eY~~iF~~~~e~~~Ld~i~RRy~Wfkr~L~ 258 (383)
T PF04100_consen 213 -------------------------------DVRE---ELIDWFCNKQLKEYRRIFRENDEAASLDNIDRRYAWFKRLLK 258 (383)
T ss_pred -------------------------------hHHH---HHHHHHHHHHHHHHHHHHcccccccchhhHHHHHHHHHHHHH
Confidence 0111 455556666666665556321 2444454 4689999999
Q ss_pred HHHhcccccCCccchHHHHHHHHHHHHHHHHHHHHhh-ccCCCChhhHHHHHchhHHhHHhHh-cCC-CCcc--------
Q 004593 317 DIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSD-RANELTNIEILKVTGWVVEYQDNLI-GLG-VDES-------- 385 (743)
Q Consensus 317 ~v~~~~~~cfPp~~~I~~~y~~~YH~~l~~~L~~l~~-~~~~l~~~~ll~ll~Wv~~Y~~~m~-~l~-i~~~-------- 385 (743)
.+.+....+|||+|+|-...+..||..++++|..++. ...+++++.++..|+-+.+|++.|. +|+ ....
T Consensus 259 ~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~ 338 (383)
T PF04100_consen 259 NFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKRKSELDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKK 338 (383)
T ss_pred HHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999999999999999999999999999984 3568999999999999999999885 672 2110
Q ss_pred cc----cc--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004593 386 LA----QV--CSESGAMDPLMNAYVERMQATTKKWYLNILDADK 423 (743)
Q Consensus 386 ~l----~~--ll~~~~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~ 423 (743)
.. .+ -+.++++++.++.|+....++|.+-+.+++..++
T Consensus 339 e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~~ 382 (383)
T PF04100_consen 339 EMKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISEEK 382 (383)
T ss_pred cccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 00 01 1345789999999999999999999999998764
No 6
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1e-12 Score=144.89 Aligned_cols=287 Identities=14% Similarity=0.200 Sum_probs=214.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCcccccchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 004593 396 MDPLMNAYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQVMI 475 (743)
Q Consensus 396 ~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~~Pe~d~dg~~~t~~~vdlfqmi~q~l~~a~~~~~~~~~~~v~~~~~~~l~ 475 (743)
++++...|+.+..-.|.+-+.+++..+.- +.-|.+.|+...|||-++++++++|..++.-..+.++++.....+.
T Consensus 424 mQel~~~y~~LE~yfm~esv~kAi~ld~y-----e~~~~~~SSmVDDV~yivrk~irRA~~T~si~~~~a~iN~~~~~l~ 498 (773)
T KOG0412|consen 424 MQELIRNYLLLEEYFMLESVQKAIKLDEY-----EDAGQLTSSMVDDVFYIVRKCIRRALSTSSIDSLCAFINEATALLD 498 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc-----ccCCcchhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 56888889999888888888888877522 1257899999999999999999998865443333377777665554
Q ss_pred H-HHHH-----------HHHHhc------------CCCCCCCcchhhheecccHhhHHHHHHHHHHhhc----cCCcchH
Q 004593 476 D-FQAA-----------ERQRLA------------EPASEIGLEPLCAIINNNLRCYDLAMELSTSTIE----SLPPNYA 527 (743)
Q Consensus 476 ~-f~~~-----------y~~~l~------------~~~~~~~~~~liA~~N~~~~~~e~~~~l~~~~~~----~v~~~~~ 527 (743)
+ |... +...++ +..++...+.++..+||...|.+|..++.+.++. .++..+.
T Consensus 499 ndf~~~L~~kLrs~~~~~~sa~N~i~s~lq~~k~~~~d~d~~~~~fl~~LNn~~ls~eyi~~L~~~le~~~~~vf~~~~d 578 (773)
T KOG0412|consen 499 NDFLVALQSKLRSIQGGAASALNIIQSSLQAGKAEDEDADLAKENFLTALNNADLSKEYIHTLKKTLESDCTEVFPQNFD 578 (773)
T ss_pred chHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhccCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 4 2221 111110 1112234566777889999999999988765542 2332221
Q ss_pred H---------------------HHHHHHHHHHHhCChhhHHHHhhcccccc---------CC-chh-hhhHHhhHHHHHH
Q 004593 528 E---------------------QEALFHLISVIFDDPEVQQLFLKLYSKEW---------SD-GQV-TEYILPTFSDYFA 575 (743)
Q Consensus 528 ~---------------------~~~~~~l~~~if~d~~l~p~~~~lft~~W---------~~-~~~-v~~I~~Tl~dy~~ 575 (743)
. ..++..+...++. |.++|++..+.+... |+ +++ |++.+..+++.+.
T Consensus 579 ~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lk-pRi~~~id~f~~is~~ls~edy~~~ea~d~~Vq~fl~~v~~l~~ 657 (773)
T KOG0412|consen 579 RAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLK-PRIRPWIDTFVNISYNLSEEDYAAYEANDPWVQQFLSSVEQLLA 657 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhHhhhhhhhhhhhccccHHHHhhhccCChHHHHHHHHHHHHHH
Confidence 1 1466777777777 778999998665432 11 245 9999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhHHHHHHhhc
Q 004593 576 DVKMFVEERSFRRFVEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMRELAS 655 (743)
Q Consensus 576 d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~ 655 (743)
.|+..|+|..|+.|+.-+.+.++.+.-..++|+. +++-|+-++.+|...+.++|+....++ +..+|..|..|+-+|+
T Consensus 658 ~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~--FNrlG~lqLDre~r~lis~lt~~t~~~-lRdKf~RLtQIatLLn 734 (773)
T KOG0412|consen 658 ELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQ--FNRLGGLQLDRELRALISYLTGVTQWN-LRDKFARLTQIATLLN 734 (773)
T ss_pred hhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhH--HHhhcchHhhHHHHHHHHHhhcccchh-HHHHHHHHHHHHHHHc
Confidence 9998899999999999888877777777777655 689999999999999999999888777 7889999999999999
Q ss_pred cCChhhHHHHHHHHhh--hCCCCCHHHHHHHHHHhcCCC
Q 004593 656 ANSVDAFALIYTNVLE--HQPDCPPEVVERLVALREAIP 692 (743)
Q Consensus 656 ~~d~~~i~~~~~~l~~--~yPD~s~~~v~aiL~~R~Dl~ 692 (743)
+++.+.+ ++||+--+ .-|-+++..|.++|.+|-|+.
T Consensus 735 le~~se~-le~w~~~~g~~twrLt~~EVr~vl~lr~df~ 772 (773)
T KOG0412|consen 735 LEKDSEI-LEYWGPNSGPLTWRLTPAEVRKVLALRIDFT 772 (773)
T ss_pred ccccchH-HHhcCCCCCCceEEeCHHHHHHHHHhhccCC
Confidence 9876554 88886542 125699999999999999874
No 7
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.02 E-value=8.4e-05 Score=88.75 Aligned_cols=595 Identities=14% Similarity=0.170 Sum_probs=330.4
Q ss_pred HHHHHHHhhcCCC---CchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 13 AAVREVAKLLTLP---DQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQ----TGLESLALSQNTINQLRENFISIE 85 (743)
Q Consensus 13 ~a~~~v~~ll~~p---~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~----~gl~~L~~a~~~v~~i~~~~~~i~ 85 (743)
.+.+|||..|+.- +.+++++++...+.-|....-.+++..+..+...+- +.+..++.-+.++..+++.|..|.
T Consensus 11 D~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~ 90 (766)
T PF10191_consen 11 DVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQ 90 (766)
T ss_pred CHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999853 246788887888888877777777777777776665 567777788888888888888888
Q ss_pred HHHHHhHHh-HHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcCChhHHHHHHHHHHHHhHHHHHHHHhhc
Q 004593 86 RYCQECQTL-IENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDDKELVNTYERLTALDGKRRFALAAAAS 164 (743)
Q Consensus 86 ~~~~~~~~~-v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~~~nLL~ah~~L~~Le~~rd~~l~~~~~ 164 (743)
+..+..+.. ...+..|.+++.+++++..+.+.|+.--.+.....++.+.+..+. +-.+..+|.+++..=.. .+.
T Consensus 91 ~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d-~~~~a~~l~~m~~sL~~----l~~ 165 (766)
T PF10191_consen 91 EEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGD-IAKIADRLAEMQRSLAV----LQD 165 (766)
T ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHH----HcC
Confidence 777655443 345588999999999999999999988888888888888887775 77788888877664331 222
Q ss_pred ChhHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhcC-CchhhHHHHHHHhhhHhhHHHHHHHHHhhcccccccccC
Q 004593 165 HIDEVGRLREYFEDVDQTWETFEKTLWTHISNFYKLSKES-PQTLVRALRVVEMQEILDQQLAEEAAEAEGDGVMATIAN 243 (743)
Q Consensus 165 ~~~~~~~l~~~f~~v~~l~~~f~~~i~~~~~~~l~l~~~~-p~~lv~a~rIIe~EE~~D~~~~~~~~~~~~~~~~~~~~~ 243 (743)
.++- ...-..++.+.+.|+..+..-+..++..-..+ -..+|.++..|+|+..--+.+..
T Consensus 166 ~pd~----~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~---------------- 225 (766)
T PF10191_consen 166 VPDY----EERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCK---------------- 225 (766)
T ss_pred CCch----hHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------
Confidence 2221 11112245555555555555555555321111 23356666666665443333321
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHHhccc
Q 004593 244 PRRSAKKSTTAMASSKNLTQQKLKVQGKHYKDKCYEKIRKTVEGRFNKLLTELVFEDLKAALEETRTIGGELGDIYDYVA 323 (743)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~pk~~k~~~~~~l~~sv~~r~~~~~~~~~~~d~~~~L~~~~~i~~dL~~v~~~~~ 323 (743)
.++...+..|.+.........|......| .++++..+. + =...|.
T Consensus 226 ------------------------~r~~~l~~~W~~~~~~~~~~~~~~~L~~f-yd~ll~~l~------~----E~~w~~ 270 (766)
T PF10191_consen 226 ------------------------CRKAPLQRLWQEYCQSDQSQSFAEWLPSF-YDELLSLLH------Q----ELKWCS 270 (766)
T ss_pred ------------------------HHHHHHHHHHHHHhhhccchhHHHHHHHH-HHHHHHHHH------H----HHHHHH
Confidence 01122333343333333323333333333 122333222 1 223456
Q ss_pred ccCCccch-HHHHHHHHH---HHHHHHHHHHHhhc-cCCCChhhHHHHHchhHHhHHhHh----cCCCCccc--cccc--
Q 004593 324 PCFPPRYE-IFQLMVNLY---TERFIQMLRLLSDR-ANELTNIEILKVTGWVVEYQDNLI----GLGVDESL--AQVC-- 390 (743)
Q Consensus 324 ~cfPp~~~-I~~~y~~~Y---H~~l~~~L~~l~~~-~~~l~~~~ll~ll~Wv~~Y~~~m~----~l~i~~~~--l~~l-- 390 (743)
.+||.++. +...++... .-.+..++...+.. .++.....+..+.+=+.+|...+. ....+.+. +..+
T Consensus 271 ~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~ 350 (766)
T PF10191_consen 271 QVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQ 350 (766)
T ss_pred HHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 79999887 333333321 11123334443321 111124455555555555655443 22111110 1000
Q ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC-cccccchhHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 004593 391 -SESGAMDPLMNAYVERMQATTKKWYLNILDADKVQPPKRTEDG-KLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISL 468 (743)
Q Consensus 391 -l~~~~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~~Pe~d~dg-~~~t~~~vdlfqmi~q~l~~a~~~~~~~~~~~v~~ 468 (743)
+. +-+.++...|-..+++.+..=+..+--.. ++. .|. .........+|.+.++.+++|...+.|......+.
T Consensus 351 al~-~PF~~~q~~Yg~lE~~~L~~~L~~l~~~~----~~~-~d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~Ll~ 424 (766)
T PF10191_consen 351 ALF-EPFKPYQQRYGELERRFLSAQLSALDLES----AEL-SDAVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGLLK 424 (766)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCC----CcH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHHHH
Confidence 00 12456777887777777776665442111 110 011 22344667889999999999998877766544444
Q ss_pred HHHHHHHHHHHHHHHHhc---C--CCC---------CC--CcchhhheecccHhhHHHHH----HHHHHhhc---cC---
Q 004593 469 AIIQVMIDFQAAERQRLA---E--PAS---------EI--GLEPLCAIINNNLRCYDLAM----ELSTSTIE---SL--- 522 (743)
Q Consensus 469 ~~~~~l~~f~~~y~~~l~---~--~~~---------~~--~~~~liA~~N~~~~~~e~~~----~l~~~~~~---~v--- 522 (743)
.+-..|..|...|...+. . +.. .. .++..+.++..|-.+..... .+..++.. .+
T Consensus 425 Ald~~~~~y~~~~~~~l~~lr~~~~~~~~~~~~~~~eDWs~fQ~aL~LL~~~g~l~~rl~~fE~~l~~~l~~~~~~l~~~ 504 (766)
T PF10191_consen 425 ALDSIFSQYLSSLTATLRSLRKSCGLDSTATSSASSEDWSLFQNALQLLQTCGELLSRLSQFEQSLRSRLLELASKLLSS 504 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444455555555544432 0 000 00 12222222222211111111 11111100 00
Q ss_pred --------------------Ccc-----------------------------------hHH---------HHHHHHHHHH
Q 004593 523 --------------------PPN-----------------------------------YAE---------QEALFHLISV 538 (743)
Q Consensus 523 --------------------~~~-----------------------------------~~~---------~~~~~~l~~~ 538 (743)
... +.. ..|.....+.
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~v~d~ 584 (766)
T PF10191_consen 505 SFSSSSDTGEAASGDTRSSSPNPWKGYNYLAASRLAELPNKAEDLQSLSEQASPSFSLLPEARAAVSRLNQQAQDLVFDV 584 (766)
T ss_pred ccCCccccccccccccCcccccchHHHHhhccccHHHHHHHHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 0233444555
Q ss_pred HhCChhhHHHHhhccc-cccCC---ch----hh-------hhHHhhHHHHHHHHHHHhhh--------------------
Q 004593 539 IFDDPEVQQLFLKLYS-KEWSD---GQ----VT-------EYILPTFSDYFADVKMFVEE-------------------- 583 (743)
Q Consensus 539 if~d~~l~p~~~~lft-~~W~~---~~----~v-------~~I~~Tl~dy~~d~~~~L~~-------------------- 583 (743)
+|. | ++.+|..+.+ +.|-. ++ .+ ..-+..|.+|+-.+=.||.|
T Consensus 585 l~~-~-i~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq~LEp~~~~~~~al~~Al~~~~~~~ 662 (766)
T PF10191_consen 585 LFS-P-IRQQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQQLEPFAESDNSALAFALHAGKLPY 662 (766)
T ss_pred HHH-H-HHHHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhHHhhhhhhcCcchHHHHHHHhcCCCC
Confidence 665 3 7888888876 46866 11 01 22245566666444444443
Q ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhHHHHH
Q 004593 584 ------------RSFRRFVEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMR 651 (743)
Q Consensus 584 ------------~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~ 651 (743)
.+-...+..+...+...|+..+++=+. .++.++.++.-|+.-|.+.+..++... -..|..+.
T Consensus 663 ~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i~~i~~-l~~~~~~QL~~Di~Yl~nVl~aLg~~~-----~~~L~~~~ 736 (766)
T PF10191_consen 663 PPESDEEAEEADDFADEWLGKVARATCALYLEQILEIPE-LSESGAKQLATDIDYLSNVLSALGLSP-----PPNLQQLV 736 (766)
T ss_pred CCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHHhCCCC-----CHHHHHHH
Confidence 223455666777777889999886543 479999999999999999999997432 25677888
Q ss_pred HhhccCChhhHHHHHHHHhhhCCCCCHHHHHHHHHHhc
Q 004593 652 ELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALRE 689 (743)
Q Consensus 652 ~ll~~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL~~R~ 689 (743)
.++++ +++.+..... .++...+.+|=.||.
T Consensus 737 ~ll~~-~~~~~~~~~~-------~~~~~~~~~v~~mr~ 766 (766)
T PF10191_consen 737 TLLKA-PPDQYAQVAK-------GLPRRLVAAVAKMRN 766 (766)
T ss_pred HHHcC-CHHHHHHHHh-------cCCHHHHHHHHHHhC
Confidence 88886 4555544333 556788888888873
No 8
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=98.73 E-value=0.0004 Score=83.07 Aligned_cols=367 Identities=13% Similarity=0.170 Sum_probs=217.1
Q ss_pred hcccccCCccchHHHHHHH-HHHHHHHHHHHHHhhccCCCChhhHHHHHchhH----HhHHhHhcCC----CCccc-ccc
Q 004593 320 DYVAPCFPPRYEIFQLMVN-LYTERFIQMLRLLSDRANELTNIEILKVTGWVV----EYQDNLIGLG----VDESL-AQV 389 (743)
Q Consensus 320 ~~~~~cfPp~~~I~~~y~~-~YH~~l~~~L~~l~~~~~~l~~~~ll~ll~Wv~----~Y~~~m~~l~----i~~~~-l~~ 389 (743)
..+..+||+...|...|+. .|+..+..++..+++...+.+..-.+..+.-+. .+-+.|...+ ++.+. ...
T Consensus 209 ~iI~~VFp~~~~Vm~~fiervf~~~I~~~i~~lL~~a~~~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~ 288 (710)
T PF07393_consen 209 KIIDRVFPNPEPVMQKFIERVFEQVIQEYIESLLEEASSISTLAYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSA 288 (710)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHH
Confidence 3455699999999999996 899999999999986444455555555544322 2222333331 11110 111
Q ss_pred c---CCCCchhHHH--HHHHHHHHHHHHHHHHHHHhh-----cc------------------------------------
Q 004593 390 C---SESGAMDPLM--NAYVERMQATTKKWYLNILDA-----DK------------------------------------ 423 (743)
Q Consensus 390 l---l~~~~~~~L~--~~Y~~~~~~~l~ew~~~~l~~-----e~------------------------------------ 423 (743)
. +..+.+.+.+ +.|+..+...+++-+...+.. ++
T Consensus 289 ~l~~~~~~lF~~~l~~~~Yl~~E~~~l~~~~~~~l~~f~~~~e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~ 368 (710)
T PF07393_consen 289 FLDQLVESLFEPYLEDDEYLEEEKRSLKELLESILSRFNELHEREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQ 368 (710)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 1 1123456777 888887777766544433322 00
Q ss_pred --------------c----------------CCCCCCCCCcccccchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 004593 424 --------------V----------------QPPKRTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQV 473 (743)
Q Consensus 424 --------------~----------------~~Pe~d~dg~~~t~~~vdlfqmi~q~l~~a~~~~~~~~~~~v~~~~~~~ 473 (743)
. ..+..+.+|.+-...+..+.+-..+.+.++...+.+.-....+..+...
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a~~il~~~~es~~R~~~l~~~~~~~~~~~~if~~ 448 (710)
T PF07393_consen 369 ISSFMSSKLDRSQQQASLENNLDLAAKANIMSSNLEGIDSLLSLEVAENILQWNKESLGRCLELSPPSDLPKNCQEIFEI 448 (710)
T ss_pred HhhhhhcccCcccccccccchhhhhccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHH
Confidence 0 0112234567777888889999999999988765322221322333333
Q ss_pred HHHHH-HHHH----HH----hcC-----CCCCCCcchhhheecccHhhHHHHHHH-HHHhhccCC--cchHHH-------
Q 004593 474 MIDFQ-AAER----QR----LAE-----PASEIGLEPLCAIINNNLRCYDLAMEL-STSTIESLP--PNYAEQ------- 529 (743)
Q Consensus 474 l~~f~-~~y~----~~----l~~-----~~~~~~~~~liA~~N~~~~~~e~~~~l-~~~~~~~v~--~~~~~~------- 529 (743)
|...+ ..|- +. +.. +.....+. ...++|.+..-....+.. .+.+.|.+. +.+...
T Consensus 449 Ll~~l~~~~i~~~lea~~~~~~~~~~~~~~~~~~l~-fl~~i~~~~~i~~l~~~~~~~~l~pl~~~~~~~~~~~~~~k~~ 527 (710)
T PF07393_consen 449 LLQSLGEEHIEPALEAAYYKLSSQDIAESKEVPPLV-FLELINQADTILQLLQIFYKEELLPLIQSSPDFLNECIQKKKS 527 (710)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 22222 2221 11 111 11101233 344444442211112211 122334331 222110
Q ss_pred ----------HHHHHHHHHHhCChhhHHHHhhccccccCC---------c--hhhhhHHhhHHHHHHHHHHHhhhhHHHH
Q 004593 530 ----------EALFHLISVIFDDPEVQQLFLKLYSKEWSD---------G--QVTEYILPTFSDYFADVKMFVEERSFRR 588 (743)
Q Consensus 530 ----------~~~~~l~~~if~d~~l~p~~~~lft~~W~~---------~--~~v~~I~~Tl~dy~~d~~~~L~~~~~~~ 588 (743)
.++...++.++.. ++..+...-...... + .+...+|..++..+.-++..|...+.+.
T Consensus 528 ~~~~le~~v~~gL~~~i~~l~~~--v~~iL~~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~ 605 (710)
T PF07393_consen 528 FESRLEEKVNAGLNKGIDVLMNW--VEFILSEQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLDV 605 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHHH
Confidence 2333334444432 444444111112221 1 1367788888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhHHHHHHhhccCChhhHHHHHHH
Q 004593 589 FVEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMRELASANSVDAFALIYTN 668 (743)
Q Consensus 589 l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~~~d~~~i~~~~~~ 668 (743)
|+.++..++....++.+.+.+ .+..||-++..|+....+++.++.... +...|..|..|+.|+.. +|+.+..-++.
T Consensus 606 f~~elg~~l~~~l~~h~kk~~--vs~~Gg~~l~~Dl~~Y~~~~~~~~~~~-v~~~F~~L~~l~nl~~v-~~~~l~~~~~~ 681 (710)
T PF07393_consen 606 FLQELGERLHRLLLKHLKKFT--VSSTGGLQLIKDLNEYQDFIRSWGIPS-VDEKFEALKELGNLFIV-DPENLKELCRE 681 (710)
T ss_pred HHHHHHHHHHHHHHHHHHhCc--cCchhHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhheee-cHHHHHHHHhh
Confidence 999999999999998885443 578999999999999999999986654 77899999999999987 56666554443
Q ss_pred HhhhCCCCCHHHHHHHHHHhcCCChHh
Q 004593 669 VLEHQPDCPPEVVERLVALREAIPRKD 695 (743)
Q Consensus 669 l~~~yPD~s~~~v~aiL~~R~Dl~r~~ 695 (743)
... +.++++.+...+..|.|+++..
T Consensus 682 ~~~--~~~~~~~i~~fi~~R~D~~~~~ 706 (710)
T PF07393_consen 682 GQL--GRFSPEEIYEFIQRRSDWKSIK 706 (710)
T ss_pred ccc--cCCCHHHHHHHHHHhhhhhhcc
Confidence 322 7789999999999999987654
No 9
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.015 Score=67.02 Aligned_cols=626 Identities=12% Similarity=0.072 Sum_probs=323.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHhHHhhHHHHHHHHHHHH
Q 004593 32 GDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQEC-QTLIENHNQIKLLSNARNN 110 (743)
Q Consensus 32 ~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~-~~~v~~~~~Ik~l~~~~~n 110 (743)
+++..++.....+-+.++-.....|-.+--.++..|..-+.++++++..+.+.+...+++ .+++-..+++.+.....+|
T Consensus 47 ~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rn 126 (800)
T KOG2176|consen 47 KPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRN 126 (800)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555567777777888888888889999999999999999999999888766 5666777999999999999
Q ss_pred HHHHHHHHhhhhcHhHHHHHHHhhhcCChhHHHHHHHHHHHHhHHHHHHHHhhcChhHHHHHHHHhhcHHHHHHHHHHHH
Q 004593 111 LNTTLKDVEGMMSISVEAAEARDSLGDDKELVNTYERLTALDGKRRFALAAAASHIDEVGRLREYFEDVDQTWETFEKTL 190 (743)
Q Consensus 111 l~~~i~~l~~l~~~~~~~~~~~~~l~~~~nLL~ah~~L~~Le~~rd~~l~~~~~~~~~~~~l~~~f~~v~~l~~~f~~~i 190 (743)
++.++..+..=..+-+.+.+.++.+.+++ ..+|-..+-.||. .-|.... +..-..+ ...++..+.+...+..
T Consensus 127 it~ai~~l~~Cl~vLEl~sK~~e~~s~kq-yy~aLktle~lE~---~yL~~~~-~~~~~~~---i~~~Ip~ik~~i~~~~ 198 (800)
T KOG2176|consen 127 ITEAIELLTLCLPVLELYSKLQEQMSEKQ-YYPALKTLESLEK---VYLPRVS-NFRFLIV---IQNRIPFIKEVIKSKS 198 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHH---HHHHhcc-cchhhHH---HhhcchHHHHHHHHHH
Confidence 99999999998888888899999999988 7777777777776 3333322 1111111 1122333333333333
Q ss_pred HHHHHHHHHHhhc-CCchhhHHHHHHHhhhHhhHHH-------HHH------H-----HHhhcccccccccCccchhhhh
Q 004593 191 WTHISNFYKLSKE-SPQTLVRALRVVEMQEILDQQL-------AEE------A-----AEAEGDGVMATIANPRRSAKKS 251 (743)
Q Consensus 191 ~~~~~~~l~l~~~-~p~~lv~a~rIIe~EE~~D~~~-------~~~------~-----~~~~~~~~~~~~~~~~~~~~~~ 251 (743)
...+++.+.-.|. .|.+=..|+..++.--+++.+. .++ + .+.++++.. ++. . -
T Consensus 199 ~~~~~e~L~~irk~s~~iGq~ai~~~~~ar~r~~~~~~~~~~~~e~~~~~~l~~l~~~~~~e~d~~~---~s~----~-~ 270 (800)
T KOG2176|consen 199 MSDFREWLENIRKKSPKIGQTAIQQAKEARQRWEEEKFNKQIEAEEQSTGSLAKLAYGLEFEEDDEH---DSI----M-I 270 (800)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccchHHHhhhhhHHHHhccccccccccc---ccc----h-h
Confidence 3333333332232 1222233444443111111110 000 0 000000000 000 0 0
Q ss_pred hhhhhhhhhh---hhhhh------cccCchhHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhhhHH--HHH
Q 004593 252 TTAMASSKNL---TQQKL------KVQGKHYKDKCYEKIRKTVEGRFNKLLTE-LVFEDLKAALEETRTIGGELG--DIY 319 (743)
Q Consensus 252 ~~~~~~~~~~---~~~~~------~~~pk~~k~~~~~~l~~sv~~r~~~~~~~-~~~~d~~~~L~~~~~i~~dL~--~v~ 319 (743)
-.++..+.+. ..+.| -..+.+|+++|...-++-=..+.....+. +...+.+..+.. |+..+.. .|.
T Consensus 271 ~~~~~~~~~~~~~~d~~plyr~~hi~~~Lg~~~~f~~~y~~nr~~q~~~~~q~~~t~~~~l~~~~t--y~~~i~Gffive 348 (800)
T KOG2176|consen 271 FQDLNELSGAIDKFDFEPLYRCLHIHSVLGLRERFRAYYQMNRRLQADLVLQPPFTQLDSLEGYQT--YFNQIAGFFIVE 348 (800)
T ss_pred ccCcccccchheeecccHHHHHHHHHHHHhhHHHHHHHHHHhHHHhhhcccCCCcchhhHHHHHHH--HHHHHhhHHHHH
Confidence 0000000000 00001 01233444444333332211111111100 101111122221 3333332 455
Q ss_pred hcccccCCcc--chHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHchhHHhHHhHhcCCCCcccccccCCCCchh
Q 004593 320 DYVAPCFPPR--YEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIGLGVDESLAQVCSESGAMD 397 (743)
Q Consensus 320 ~~~~~cfPp~--~~I~~~y~~~YH~~l~~~L~~l~~~~~~l~~~~ll~ll~Wv~~Y~~~m~~l~i~~~~l~~ll~~~~~~ 397 (743)
+++..|-|-. |+=.+..-..-...+...|.... ...-+++.++.|=+++.-|-..|+.+|.+++.+- +.+.
T Consensus 349 d~il~t~~~~~s~~~ve~lW~~~i~k~v~~L~~~~--s~~~t~~~ll~lKd~i~L~~~tl~~yg~~V~~l~-----~~l~ 421 (800)
T KOG2176|consen 349 DHILRTTGGFLSYNEVEELWDTAISKLVATLSYQS--SRCQTPNHLLKLKDLIVLLGATLENYGFNVEPLY-----DLLV 421 (800)
T ss_pred HHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH--HhcCChhHHHHHHhHHHHHHHHHHHcCCchhHHH-----HHHH
Confidence 6665665532 21122222223333334444333 3356788899998888888889999998875442 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc------------------------cCCCCCCCCCcccccchhHHHHHHHHHHHH
Q 004593 398 PLMNAYVERMQATTKKWYLNILDADK------------------------VQPPKRTEDGKLYTPAAVDLFRILGEQVQI 453 (743)
Q Consensus 398 ~L~~~Y~~~~~~~l~ew~~~~l~~e~------------------------~~~Pe~d~dg~~~t~~~vdlfqmi~q~l~~ 453 (743)
.+.+.|.+..-..-..-+..+++.+. +.+|-..+.-..+|+..-+++..+++.+.-
T Consensus 422 ~~rdky~e~LL~~~~~~f~e~l~~D~f~pm~V~~e~~Ye~~v~~fp~~~~e~~~~~Fp~~~pFS~mvP~~c~~~k~fi~~ 501 (800)
T KOG2176|consen 422 EIRDKYHEVLLRKWRKIFREALEKDDFMPMVVKKEEEYEKNVLSFPFQNEELEPLPFPKTFPFSPMVPDVCTQAKKFIYA 501 (800)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhcccccccccHHHHhhhhhccccccccccCCCCcccCCCCcCCchHHHHHHHHHHH
Confidence 77899999988888888888887762 112323455678888889999988888854
Q ss_pred Hhh-cchhhHH-HHHHHHHHHHHHHH-HHHHHHHhcCCCCCCCcchhhheecccHhhHHHHH---HHHHHhhcc------
Q 004593 454 VRD-NSTDVML-YRISLAIIQVMIDF-QAAERQRLAEPASEIGLEPLCAIINNNLRCYDLAM---ELSTSTIES------ 521 (743)
Q Consensus 454 a~~-~~~~~~~-~~v~~~~~~~l~~f-~~~y~~~l~~~~~~~~~~~liA~~N~~~~~~e~~~---~l~~~~~~~------ 521 (743)
+.. .+..... ..+.......-..+ ....-..+....+..++..++=++=|-.++..-+. +....+.+.
T Consensus 502 ~v~fls~~~l~~~e~~~~~~~~~~l~l~rs~vl~~~~~~~~~~lsq~~QI~~n~~~fe~a~~~f~~~a~~~~~~~~~~~e 581 (800)
T KOG2176|consen 502 CVKFLSDLVLLETEVLNKIRKDTNLLLTRSLVLSLTSSLPSLNLSQAMQIAANLDYFEIAADFFLEFACHLNGIPNRDAE 581 (800)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhHHHHHHHHHccCCcccccc
Confidence 432 1111111 01111111110000 01111111111122233333322223322222221 111121111
Q ss_pred -C--CcchHH-H-HHHHHHHHHHhCChhhHHHHhhccccccCCch----h---hhhHHhhHHHHHHHHHHHhhhhHHHHH
Q 004593 522 -L--PPNYAE-Q-EALFHLISVIFDDPEVQQLFLKLYSKEWSDGQ----V---TEYILPTFSDYFADVKMFVEERSFRRF 589 (743)
Q Consensus 522 -v--~~~~~~-~-~~~~~l~~~if~d~~l~p~~~~lft~~W~~~~----~---v~~I~~Tl~dy~~d~~~~L~~~~~~~l 589 (743)
. +..+-. + .+...+...+=. .++..+.-. --.|.+.+ + +..++.-++--+.....+|.....+.+
T Consensus 582 ~~~~s~~l~~sr~~Ae~~l~~~i~~--Kid~f~~l~-~~dW~t~e~pq~~~~~i~e~~~yLet~~~s~~q~LP~~v~~~v 658 (800)
T KOG2176|consen 582 RPSSSTKLLASRKLAETELIELIKL--KIDDFLELI-EYDWTTTEVPQGPSEYINEMLIYLETMFSSALQILPYKVAQLV 658 (800)
T ss_pred ccccchhhhhhhhhHHHHHHHHHhh--hhHHHHHHh-hccccccccCCCccHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 1 111111 1 122222211111 122222222 45787631 1 333333344333333336777778888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCc-CchHHHHHHHHHHHHHHHHHhcc---cchh-hhhhhhhhHHHHHHhhccCChhhHHH
Q 004593 590 VEACLEETIVLFIDHLLSQKNY-IKEITIERMREDEEAIIEAFREY---VSVN-KVESKVRVLTDMRELASANSVDAFAL 664 (743)
Q Consensus 590 ~~~l~~~~v~~Yi~~l~k~~~~-~~~~~a~~i~~D~~~l~~~F~~~---~s~~-~v~~~~~~l~~l~~ll~~~d~~~i~~ 664 (743)
|-...+++....+.-+.....+ .+-.++..+.-|+..+..|-.+= +..+ .....|--+..+++++..++++.+..
T Consensus 659 ~~~~~~his~~iv~llldd~ik~is~~Ai~~fnlDv~~lEsfa~~~p~~~~~~~~~~~~fielrQlinLL~~~~~e~y~~ 738 (800)
T KOG2176|consen 659 CLRELDHISTSIVGLLLDDSIKQISMGAITNFNLDVNYLESFAASPPVPPNQEGVLAKAFIELRQLINLLLLSDWETYLN 738 (800)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHccchhHHHHHHhccCCCCCCcccchhHHHHHHHHHHHHHHHhcCHHHhhC
Confidence 8888888888888887765542 35789999999999999887762 1111 12345666778899998888887777
Q ss_pred HHHHHhhhCCCCCHHHHHHHHH
Q 004593 665 IYTNVLEHQPDCPPEVVERLVA 686 (743)
Q Consensus 665 ~~~~l~~~yPD~s~~~v~aiL~ 686 (743)
.+..... |--+.+..+..+|.
T Consensus 739 ~~~r~rs-Y~rl~~~~a~t~lE 759 (800)
T KOG2176|consen 739 DYGRERS-YNRLQPAKAATLLE 759 (800)
T ss_pred chhhhhh-hhccCHHHHHHHHH
Confidence 7776666 76666666666665
No 10
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=97.88 E-value=0.0032 Score=72.07 Aligned_cols=338 Identities=12% Similarity=0.130 Sum_probs=187.3
Q ss_pred HhhhhHHHHHhcccccCCc----cchHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHchhHHhHHhHh-cCCCCc
Q 004593 310 TIGGELGDIYDYVAPCFPP----RYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLI-GLGVDE 384 (743)
Q Consensus 310 ~i~~dL~~v~~~~~~cfPp----~~~I~~~y~~~YH~~l~~~L~~l~~~~~~l~~~~ll~ll~Wv~~Y~~~m~-~l~i~~ 384 (743)
|+.+-...+...+.|.+-+ ++++...|+..--..+...+..-+. ...-+..-+..++.=+..|-+.|. .++-+.
T Consensus 40 ~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~~Kl~~~l~-~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~ 118 (494)
T PF04437_consen 40 WIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVREKLRSDLP-ELLDDPSLLSHLIDEILSFDKELRSLYGYPG 118 (494)
T ss_dssp HHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHHHHHHHHTS---S
T ss_pred HHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHHHHHHHHHH-hhccChhHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5555545555666677755 4666666666655666655555441 112233444445555555777775 343333
Q ss_pred ccccccCCCCch--hHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-----CCCCCcccccchhHHHHHHHHHHHHHhh-
Q 004593 385 SLAQVCSESGAM--DPLMNAYVERMQATTKKWYLNILDADKVQPPK-----RTEDGKLYTPAAVDLFRILGEQVQIVRD- 456 (743)
Q Consensus 385 ~~l~~ll~~~~~--~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~~Pe-----~d~dg~~~t~~~vdlfqmi~q~l~~a~~- 456 (743)
++.+. ....+ +...+.+++.+++.-.+=++.++..+..=.++ .+.+..-.|.++..+..+++.-.++...
T Consensus 119 d~~~~--~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L 196 (494)
T PF04437_consen 119 DWQGS--TLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEADSDELKPTKSAERFVKLLESITDRYRPL 196 (494)
T ss_dssp --------CGGGS-HHHHHHHHHHHHHHHHHHHH---------------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred ccchh--HHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccCCchhhcchHHHHHHHHHHHHHHHHHhhc
Confidence 11111 11122 45667777777777666677776655211122 2344566788888888888887766553
Q ss_pred --cchhhHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCCCCCcchhhheecccHhhHHHHHHHHHHhh-----
Q 004593 457 --NSTDVMLYRISLAIIQVMIDFQAAERQRLA----------EPASEIGLEPLCAIINNNLRCYDLAMELSTSTI----- 519 (743)
Q Consensus 457 --~~~~~~~~~v~~~~~~~l~~f~~~y~~~l~----------~~~~~~~~~~liA~~N~~~~~~e~~~~l~~~~~----- 519 (743)
.+....+. ...-+..+..|..+....++ ......+++.+|.+.|++.++.....+..+.+.
T Consensus 197 ~~~~~rl~Fl--~~iql~lld~~~~~L~~~~~~~~~~~s~~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~ 274 (494)
T PF04437_consen 197 PSLSHRLRFL--IDIQLPLLDDYHDRLSQSLEAFESSTSTLASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMR 274 (494)
T ss_dssp HH---GG--G--HHHHHHHHHHTHHHHHHHHHHHHHT----SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH---
T ss_pred CchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcccchhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhh
Confidence 23322221 11123333344333322211 001123578899999999888776665544211
Q ss_pred ------------cc---CC----cchHHH---------HHHHHHHHHHhCChhhHHHHhhccc-cccCCc--h-------
Q 004593 520 ------------ES---LP----PNYAEQ---------EALFHLISVIFDDPEVQQLFLKLYS-KEWSDG--Q------- 561 (743)
Q Consensus 520 ------------~~---v~----~~~~~~---------~~~~~l~~~if~d~~l~p~~~~lft-~~W~~~--~------- 561 (743)
+. .+ .-|.+. .+...+++.+..+ ++..++..++ .+|... .
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~--~k~~lk~Y~k~~~W~~~~~~~~~~~~~ 352 (494)
T PF04437_consen 275 AKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKE--FKASLKAYFKRSQWSSIESPSDSSPLS 352 (494)
T ss_dssp ---------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHH--HHHHTHHHHT--GGGT-----------
T ss_pred ccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCccCCCCcccccccccCC
Confidence 00 00 012211 4555566666654 6777777777 789642 1
Q ss_pred ---hhhhHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhcccchh
Q 004593 562 ---VTEYILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVN 638 (743)
Q Consensus 562 ---~v~~I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~ 638 (743)
.....+..+..++..+.+.|.+..|..+...++..+...++..++..+ .++..||.|+..|.+.|...|..+....
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p 431 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQYTPRP 431 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS--TTSGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHhhccCH
Confidence 144556788899999999999999999999999988888888787666 4799999999999999999999976654
Q ss_pred hhhhhhhhHHHHHHhhccC
Q 004593 639 KVESKVRVLTDMRELASAN 657 (743)
Q Consensus 639 ~v~~~~~~l~~l~~ll~~~ 657 (743)
...|..+.....||++.
T Consensus 432 --~~~f~~l~E~~~LL~L~ 448 (494)
T PF04437_consen 432 --EAFFKRLREACKLLNLP 448 (494)
T ss_dssp ---HHHHHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHHHcCCC
Confidence 26788888888888874
No 11
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=97.72 E-value=0.0026 Score=74.14 Aligned_cols=206 Identities=12% Similarity=0.152 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHH-HHhhhhHHHHHhcccccCCccchHH-HHHHHHHHHHHHHHHHH
Q 004593 276 KCYEKIRKTVEGRFNKLLTELV---FEDLKAALEET-RTIGGELGDIYDYVAPCFPPRYEIF-QLMVNLYTERFIQMLRL 350 (743)
Q Consensus 276 ~~~~~l~~sv~~r~~~~~~~~~---~~d~~~~L~~~-~~i~~dL~~v~~~~~~cfPp~~~I~-~~y~~~YH~~l~~~L~~ 350 (743)
++-.-|+.|++..|........ ..++...|-.+ +.+.+-...-.+...|.+....... ..-+...|.+..+.|+.
T Consensus 384 ~ie~YIrsSi~~Af~~~~~~~~~~~~~~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg~~Lk~ 463 (677)
T PF05664_consen 384 RIESYIRSSIKAAFARMASSVDSRSDSEPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAATLHSCYGNELKQ 463 (677)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 3444566677766655422111 12233333332 1333333344556677775533333 33345899999999999
Q ss_pred HhhccCCCChhhHHHHHchhHHhHHhHhc-------CCCCc--ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004593 351 LSDRANELTNIEILKVTGWVVEYQDNLIG-------LGVDE--SLAQVCSESGAMDPLMNAYVERMQATTKKWYLNILDA 421 (743)
Q Consensus 351 l~~~~~~l~~~~ll~ll~Wv~~Y~~~m~~-------l~i~~--~~l~~ll~~~~~~~L~~~Y~~~~~~~l~ew~~~~l~~ 421 (743)
++.....|. .+.+.+|.=..+.++.+.. .|.+. ..+.|.--+..+..|+..+++....++.+|++|++++
T Consensus 464 ~L~~~~~LT-~d~v~VL~aA~~LEk~Lvq~~~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~q 542 (677)
T PF05664_consen 464 FLSGVTHLT-PDVVEVLQAADKLEKALVQMVSVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERLNEWVDRAIKQ 542 (677)
T ss_pred HHcccccCC-HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 985433443 3555777665666664431 11111 0122322235577899999999999999999999999
Q ss_pred cccCCCCCCCCCcccccchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004593 422 DKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQVMIDFQAAERQRLA 486 (743)
Q Consensus 422 e~~~~Pe~d~dg~~~t~~~vdlfqmi~q~l~~a~~~~~~~~~~~v~~~~~~~l~~f~~~y~~~l~ 486 (743)
|.++ |-. +...|+++.||||+|++|.++--..+.-+... .++...+..+...++.|-..+.
T Consensus 543 E~W~-P~S--~~e~hs~SvVEvfri~~eTvd~ff~L~~~~~~-~~l~~L~~gld~~lq~Y~~~v~ 603 (677)
T PF05664_consen 543 EKWN-PRS--KEERHSPSVVEVFRIFNETVDQFFQLPWPMHA-DFLQALSKGLDKALQRYCEKVE 603 (677)
T ss_pred ccCC-cCC--CCCCCcchHHHHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 332 34677999999999999999877665443332 5566777888888888877664
No 12
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=97.45 E-value=0.44 Score=56.09 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHchhHHhHHhHhc-CCCCcccccccCCCCchhHHHHHHHHHHHH
Q 004593 331 EIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIG-LGVDESLAQVCSESGAMDPLMNAYVERMQA 409 (743)
Q Consensus 331 ~I~~~y~~~YH~~l~~~L~~l~~~~~~l~~~~ll~ll~Wv~~Y~~~m~~-l~i~~~~l~~ll~~~~~~~L~~~Y~~~~~~ 409 (743)
++.+..+..-++-+..++.+++ ..+.++..++.+.+=+.-|..++.+ +|.+.. + ...+..|.+.-.+....
T Consensus 303 ~lld~i~~~l~rplk~RvEQvi--~se~~~i~~yki~~LL~fY~~~~~k~i~~~s~-L-----~~tl~~L~~~a~~~f~~ 374 (618)
T PF06419_consen 303 ELLDRILEGLCRPLKIRVEQVI--SSEEDPITLYKIANLLSFYQMTFSKLIGEDSS-L-----IETLKELQDLAQKKFFS 374 (618)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH--HcCCCccHHHHHHHHHHHHHHHHHHHcCCCch-H-----HHHHHHHHHHHHHHHHH
Confidence 4556666777888888899988 4477888888888876557777765 454421 1 14567788887788888
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCcccccchhHHHHHHHHHHHH
Q 004593 410 TTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQI 453 (743)
Q Consensus 410 ~l~ew~~~~l~~e~~~~Pe~d~dg~~~t~~~vdlfqmi~q~l~~ 453 (743)
.++.++.++..... .+|.. .....+...+....+.+-++.
T Consensus 375 ~l~~~~~~l~~~~~-~~~~~---DL~PP~~l~d~l~~L~~il~~ 414 (618)
T PF06419_consen 375 SLRDHVAKLLRSAP-EPPPA---DLSPPEWLIDFLSLLREILDV 414 (618)
T ss_pred HHHHHHHHHHhhCC-CCCCC---CCCCCHHHHHHHHHHHHHHHH
Confidence 88888888876621 12322 255566677888888888877
No 13
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=96.60 E-value=0.52 Score=50.05 Aligned_cols=172 Identities=14% Similarity=0.158 Sum_probs=124.0
Q ss_pred HHHhhcCCC-CchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 004593 17 EVAKLLTLP-DQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLI 95 (743)
Q Consensus 17 ~v~~ll~~p-~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v 95 (743)
+.=+.++.. -+++-++....++......|+.+|...|..+-++--.|+..+.+-+.++......+...++....+.+.+
T Consensus 18 ~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~ 97 (291)
T PF10475_consen 18 YELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENL 97 (291)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445555 5677899999999999999999999999999999999999988888888877777777777777766654
Q ss_pred Hh-hHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcCChhHHHHHHHHHHHHhHHHHHHHHhhcChhHHHHHHH
Q 004593 96 EN-HNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDDKELVNTYERLTALDGKRRFALAAAASHIDEVGRLRE 174 (743)
Q Consensus 96 ~~-~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~~~nLL~ah~~L~~Le~~rd~~l~~~~~~~~~~~~l~~ 174 (743)
.. =-.|-.....++|+..+...|+.|..+.+....++.++.++. ...|..-+.+.+.. +...+ ...-+..
T Consensus 98 ~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~d-y~~Al~li~~~~~~----l~~l~----~~~c~~~ 168 (291)
T PF10475_consen 98 TKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGD-YPGALDLIEECQQL----LEELK----GYSCVRH 168 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH----HHhcc----cchHHHH
Confidence 44 244557888899999999999999999998888999998886 55555544444432 22111 1122334
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHH
Q 004593 175 YFEDVDQTWETFEKTLWTHISNF 197 (743)
Q Consensus 175 ~f~~v~~l~~~f~~~i~~~~~~~ 197 (743)
+-+++.......++++-..+.+.
T Consensus 169 L~~~L~e~~~~i~~~ld~~l~~~ 191 (291)
T PF10475_consen 169 LSSQLQETLELIEEQLDSDLSKV 191 (291)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665555544
No 14
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=95.93 E-value=0.24 Score=46.53 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh-HHHHHHHHHH
Q 004593 30 FIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH-NQIKLLSNAR 108 (743)
Q Consensus 30 kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~ 108 (743)
..+.-..++.+-+..++..|+..|..+-++...++..-+.....|++-++.+..++....+|...+..= +.++++....
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s 116 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRS 116 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 477788899999999999999999999999999999999999999999999999999999888877655 7777776555
Q ss_pred HHHHH---HHHHHhhhhcHhHHHHH
Q 004593 109 NNLNT---TLKDVEGMMSISVEAAE 130 (743)
Q Consensus 109 ~nl~~---~i~~l~~l~~~~~~~~~ 130 (743)
..... ++..++.+..+|+.+++
T Consensus 117 ~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 117 QEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 55554 45566677777877653
No 15
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=95.73 E-value=6 Score=46.56 Aligned_cols=168 Identities=12% Similarity=0.126 Sum_probs=108.3
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh-H---HHH
Q 004593 27 QLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH-N---QIK 102 (743)
Q Consensus 27 ~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~-~---~Ik 102 (743)
+-+.+.....++.++...+.+++.+.+++........+....+....+..+..++.++-+...+.+. ..++ . ++.
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i-~~~l~~a~~e~~ 86 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEI-QPQLRDAAEELQ 86 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHH
Confidence 3456778888999999999999999999999988888888777777777777777665444222211 1222 2 222
Q ss_pred HHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcCChhHHHHHHHHHHHHhHHHHHHHHhhcC-hhHHHHHHHHhhcHHH
Q 004593 103 LLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDDKELVNTYERLTALDGKRRFALAAAASH-IDEVGRLREYFEDVDQ 181 (743)
Q Consensus 103 ~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~~~nLL~ah~~L~~Le~~rd~~l~~~~~~-~~~~~~l~~~f~~v~~ 181 (743)
.+..-.+....++..+++|..+.+..++.+..+.++. ++.|-..|-+++. .+...... ..+...+...-.++..
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~-~~~Aa~~L~~~~~----~L~~l~~~~~~~~~i~~~Lk~e~~~ 161 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGN-YLDAADLLEELKS----LLDDLKSSKFEELKILKLLKDEYSE 161 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH----HHHhcCcCcccccHHHHHHHHHHHH
Confidence 2333333334556778888888888888888888777 7777777776665 33332211 1223344444455666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004593 182 TWETFEKTLWTHISNFYKL 200 (743)
Q Consensus 182 l~~~f~~~i~~~~~~~l~l 200 (743)
+.+.+..++...+.+++..
T Consensus 162 lr~~L~~~L~~~w~~lv~~ 180 (593)
T PF06248_consen 162 LRENLQYQLSEEWERLVQW 180 (593)
T ss_pred HHHHHHHHHHHHHHhheee
Confidence 6666666666666665543
No 16
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=95.30 E-value=1.1 Score=45.82 Aligned_cols=164 Identities=7% Similarity=0.089 Sum_probs=111.1
Q ss_pred HHHHHHHHHhCChhhHHHHhhccccccCCc------hh-hhhHHhhHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHH
Q 004593 531 ALFHLISVIFDDPEVQQLFLKLYSKEWSDG------QV-TEYILPTFSDYFADVK-----MFVEERSFRRFVEACLEETI 598 (743)
Q Consensus 531 ~~~~l~~~if~d~~l~p~~~~lft~~W~~~------~~-v~~I~~Tl~dy~~d~~-----~~L~~~~~~~l~~~l~~~~v 598 (743)
+....+..+++ +......+...+|--. +. |+.++.-+..|..-+. ..+.++....+++.+...+.
T Consensus 58 iy~~~a~~~l~---~~~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~ 134 (234)
T PF10474_consen 58 IYKCVASRLLD---LEQILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAF 134 (234)
T ss_pred HHHHHHHHHcC---HHHHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 45555666664 7888888888999542 23 7777777766655441 12345556666666666665
Q ss_pred HHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhHHHHHHhhccCChhhHHHHHHHHhhhCCCCCH
Q 004593 599 VLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPP 678 (743)
Q Consensus 599 ~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s~ 678 (743)
...+..+-+-+ +|+..|-..|..|...+...+..+.+...+ ...+-++...+-.-+. . .++...++.+|.-|.
T Consensus 135 ~~Lveg~s~vk-KCs~eGRalM~lD~q~~~~~le~l~~~~~~-p~~~~Ve~YIKAyYl~-e----~e~~~W~~~h~eYs~ 207 (234)
T PF10474_consen 135 ETLVEGYSRVK-KCSNEGRALMQLDFQQLQNKLEKLSGIRPI-PNREYVENYIKAYYLP-E----EELEEWIRTHTEYSK 207 (234)
T ss_pred HHHHHHHHhcc-CCChhhHHHHHHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHcCC-H----HHHHHHHHhCcccCH
Confidence 55555554333 378999999999999999999988664322 2334444444443443 2 245566677799999
Q ss_pred HHHHHHHHHhcCCChHhHHHHHHHHH
Q 004593 679 EVVERLVALREAIPRKDAKEIVQECK 704 (743)
Q Consensus 679 ~~v~aiL~~R~Dl~r~~~~~il~~~~ 704 (743)
.|+.+|+.+=...+|.+++.+++.+.
T Consensus 208 ~ql~~Lv~~~~~~~kk~r~~ll~~ie 233 (234)
T PF10474_consen 208 KQLVGLVNCAAASKKKTRQRLLNAIE 233 (234)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 99999999887778899999888764
No 17
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=94.69 E-value=0.47 Score=50.80 Aligned_cols=151 Identities=11% Similarity=0.144 Sum_probs=74.6
Q ss_pred HHHHHHHHHhCChhhHHHHhhccccccCCch----h---hhhHHhhHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004593 531 ALFHLISVIFDDPEVQQLFLKLYSKEWSDGQ----V---TEYILPTFSDYFAD-VKMFVEERSFRRFVEACLEETIVLFI 602 (743)
Q Consensus 531 ~~~~l~~~if~d~~l~p~~~~lft~~W~~~~----~---v~~I~~Tl~dy~~d-~~~~L~~~~~~~l~~~l~~~~v~~Yi 602 (743)
|-..+...+-. .+...+ .+-.-.|...+ + +..++.-++.-+.. +. .|.+...+.++-...+++....+
T Consensus 145 Ae~~I~~lv~~--KIDe~l-ela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~-~LP~~v~~~~~~~a~~his~~l~ 220 (311)
T PF04091_consen 145 AEKRIFELVNS--KIDEFL-ELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLT-NLPPSVKQLVYFSACDHISESLL 220 (311)
T ss_dssp HHHHHHHHHHH--HHHHHH-TT--TT--------S--HHHHHHHHHHHHHHHTTTT-TSH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHH-hhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 44444444332 245445 44445798632 1 66666666666644 44 57778888888888888888888
Q ss_pred HHHhcCCC-cCchHHHHHHHHHHHHHHHHHhcccc----hhhhhhhhhhHHHHHHhhccCChhhHHHHHHHHhhhCCCCC
Q 004593 603 DHLLSQKN-YIKEITIERMREDEEAIIEAFREYVS----VNKVESKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCP 677 (743)
Q Consensus 603 ~~l~k~~~-~~~~~~a~~i~~D~~~l~~~F~~~~s----~~~v~~~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s 677 (743)
.-|+.... ..+..|...+..|+..+..|....+. ...+...|.-+..+.+|+...+++.+ .+...-.++|+.+.
T Consensus 221 ~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y-~d~~~r~~kY~~v~ 299 (311)
T PF04091_consen 221 DLLLSDDVKRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEY-LDPGIRERKYSRVK 299 (311)
T ss_dssp HHHT---------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH----------------------
T ss_pred HHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHH-hCccccccccCCCC
Confidence 88765443 25789999999999999999998843 22356788999999999988888888 77777778999999
Q ss_pred HHHHHHHHH
Q 004593 678 PEVVERLVA 686 (743)
Q Consensus 678 ~~~v~aiL~ 686 (743)
++.+..||.
T Consensus 300 p~~~~~lLe 308 (311)
T PF04091_consen 300 PEKAIKLLE 308 (311)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999888876
No 18
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=93.93 E-value=11 Score=40.75 Aligned_cols=80 Identities=9% Similarity=0.127 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCCCCCCCcccccchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 004593 397 DPLMNAYVERMQATTKKWYLNILDADKVQ--PPKRTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQVM 474 (743)
Q Consensus 397 ~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~--~Pe~d~dg~~~t~~~vdlfqmi~q~l~~a~~~~~~~~~~~v~~~~~~~l 474 (743)
+.|+..|+......+.+-+.++++.|.-. .+..++++.+.|+.+.|+|-++++++.+|-.++.-.....+++.+...+
T Consensus 238 qell~~Y~~Le~~y~~~Sv~KAi~lde~p~~~~~~~~~~~~~SS~vDDvffil~k~l~RalsTg~~~~v~a~in~~~~iL 317 (331)
T PF08318_consen 238 QELLGYYIPLEEFYLRRSVEKAIQLDELPSLNSLLDSSSPPTSSVVDDVFFILRKVLRRALSTGSIDTVCAVINHLVRIL 317 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999987421 1122467899999999999999999999887655444436666665555
Q ss_pred HH
Q 004593 475 ID 476 (743)
Q Consensus 475 ~~ 476 (743)
.+
T Consensus 318 ~~ 319 (331)
T PF08318_consen 318 QN 319 (331)
T ss_pred HH
Confidence 44
No 19
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=93.73 E-value=0.43 Score=42.29 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhHHHHHHhhccCChhhHHHHHHH
Q 004593 589 FVEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMRELASANSVDAFALIYTN 668 (743)
Q Consensus 589 l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~~~d~~~i~~~~~~ 668 (743)
++.++...+-..-++.|+.++..++..-|-+|+..+..+.++..+.+-...+...+..+...+.++.+ +...+. ++..
T Consensus 2 ~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~~~~~l~~l~Qa~~lL~~-~k~~~~-d~~~ 79 (105)
T PF01843_consen 2 LFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEAAEEHLQPLSQAANLLQL-RKSTLQ-DWDS 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH-HHHCHHHHHHHHHCCC---SSHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-cCcchh-HHHH
Confidence 34455555666667788877777889999999999999999999887655456789999999999987 555564 8889
Q ss_pred HhhhCCCCCHHHHHHHHH
Q 004593 669 VLEHQPDCPPEVVERLVA 686 (743)
Q Consensus 669 l~~~yPD~s~~~v~aiL~ 686 (743)
+...+|.+++..+..||.
T Consensus 80 ~~~~c~~Ln~~Qi~~iL~ 97 (105)
T PF01843_consen 80 LRETCPSLNPAQIRKILS 97 (105)
T ss_dssp HCCCTTTS-HHHHHHHHC
T ss_pred HHHHcccCCHHHHHHHHH
Confidence 999999999999999986
No 20
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=92.03 E-value=1.2 Score=47.92 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=62.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCcccccchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 004593 395 AMDPLMNAYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQVM 474 (743)
Q Consensus 395 ~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~~Pe~d~dg~~~t~~~vdlfqmi~q~l~~a~~~~~~~~~~~v~~~~~~~l 474 (743)
.+++|+..|+....-.+.+-+.++++.+.. |..+.++.++|+...|+|-++++++.+|..++.-.....+++.+...|
T Consensus 234 kvqell~~Y~~le~~y~~~Sv~KAi~lde~--~~~~~~~~~~SS~VDDvffil~k~l~RalsT~~~~~v~a~in~~~~~L 311 (324)
T smart00762 234 KIQELLGTYVPLETYYFRRSVEKAIKLDEL--PSDEDKDPLTSSMVDDVFYLLRKVLRRALSTGNIASLTAFINELASVL 311 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CcccCCCCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999977532 323456789999999999999999999887665444436766666655
Q ss_pred H
Q 004593 475 I 475 (743)
Q Consensus 475 ~ 475 (743)
.
T Consensus 312 ~ 312 (324)
T smart00762 312 Q 312 (324)
T ss_pred H
Confidence 4
No 21
>PF15469 Sec5: Exocyst complex component Sec5
Probab=91.93 E-value=13 Score=36.32 Aligned_cols=139 Identities=12% Similarity=0.221 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHhHHhh-HHHH---HHHHHHHHHHHHHH
Q 004593 47 AQLSTMVAEQIEQAQTGLESLALSQNTINQLREN------FISIERYCQECQTLIENH-NQIK---LLSNARNNLNTTLK 116 (743)
Q Consensus 47 ~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~------~~~i~~~~~~~~~~v~~~-~~Ik---~l~~~~~nl~~~i~ 116 (743)
++|++.|++..+..-.+...|......+...... +..++....++....... ..|- +=...-++.-.+++
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3577777777777777777776666666544432 344443333332222222 2221 11222233334577
Q ss_pred HHhhhhcHhHHHHHHHhhhcCCh--hHHHHHHHHHHHHhHHHHHHHHhhcChhHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 004593 117 DVEGMMSISVEAAEARDSLGDDK--ELVNTYERLTALDGKRRFALAAAASHIDEVGRLREYFEDVDQTWETFEKTLWTHI 194 (743)
Q Consensus 117 ~l~~l~~~~~~~~~~~~~l~~~~--nLL~ah~~L~~Le~~rd~~l~~~~~~~~~~~~l~~~f~~v~~l~~~f~~~i~~~~ 194 (743)
..+.||.+|..+.+ -+..+. ++..-|.+...+ .+........+...+..|+.+.+.|.+.+|.-+
T Consensus 82 r~~flF~LP~~L~~---~i~~~dy~~~i~dY~kak~l----------~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L 148 (182)
T PF15469_consen 82 RNRFLFNLPSNLRE---CIKKGDYDQAINDYKKAKSL----------FEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKL 148 (182)
T ss_pred HHHHHHHhHHHHHH---HHHcCcHHHHHHHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999988654 343332 233333322211 111111467789999999999999999999887
Q ss_pred HHHH
Q 004593 195 SNFY 198 (743)
Q Consensus 195 ~~~l 198 (743)
.+.-
T Consensus 149 ~~~~ 152 (182)
T PF15469_consen 149 LSPP 152 (182)
T ss_pred hCCC
Confidence 6654
No 22
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=1.8 Score=50.50 Aligned_cols=123 Identities=13% Similarity=0.008 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcC----chHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhHHHHHHhhccCChh
Q 004593 585 SFRRFVEACLEETIVLFIDHLLSQKNYI----KEITIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMRELASANSVD 660 (743)
Q Consensus 585 ~~~~l~~~l~~~~v~~Yi~~l~k~~~~~----~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~~~d~~ 660 (743)
....-..+.+..++.+|++.+......| -..+...+..+...|.++|..+.+..- +.-.++..++.+...-...
T Consensus 233 ~w~~~~~e~~r~~i~EdL~~~~~~l~~cfpp~~~if~~~l~~Yh~~ls~ll~dl~s~~l--~~~eil~llawV~~~~~~~ 310 (667)
T KOG2286|consen 233 EWQVRLLEVLRFVIREDLRVAKRVLVPCFPPHYNIFSAYLELYHQALSDLLRDLASEAL--ELREILQLLAWVRNEYYTP 310 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHhcCh
Confidence 4444555666678999998887533222 267888999999999999999988552 4557888888887333445
Q ss_pred hHHHHHHHHhhhCCCCCHHHHHHHHHHhcCCChHhHHHHHHHHHHHHHh
Q 004593 661 AFALIYTNVLEHQPDCPPEVVERLVALREAIPRKDAKEIVQECKEIYEN 709 (743)
Q Consensus 661 ~i~~~~~~l~~~yPD~s~~~v~aiL~~R~Dl~r~~~~~il~~~~~~~~~ 709 (743)
.+..+.....+.+|+++++|+.+|++.+.-...+..++.+..+.++-..
T Consensus 311 ~l~~~~~~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~ 359 (667)
T KOG2286|consen 311 LLQLNVDVLRALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAA 359 (667)
T ss_pred hhhccchhhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999877777777777777766544
No 23
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=91.04 E-value=10 Score=35.01 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=82.5
Q ss_pred HHHHHHhhcC----CCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 14 AVREVAKLLT----LPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQ 89 (743)
Q Consensus 14 a~~~v~~ll~----~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~ 89 (743)
|..+.+.++. ..++=..++.-..|+..-+..++.+|.+.|.+.-+..=.-......+...+..|+..+..+..-++
T Consensus 10 ~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~ 89 (132)
T PF10392_consen 10 PVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYE 89 (132)
T ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566665 222233577778899999999999999999988888777777777777788888888888777777
Q ss_pred HhHH-hHHhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004593 90 ECQT-LIENHNQIKLLSNARNNLNTTLKDVEGMMS 123 (743)
Q Consensus 90 ~~~~-~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~ 123 (743)
.-.. .+.-|+.|.....+-+|+.+|.+-|.+...
T Consensus 90 RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r 124 (132)
T PF10392_consen 90 RLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSR 124 (132)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 346678888888888888888777776544
No 24
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=50 Score=37.92 Aligned_cols=185 Identities=12% Similarity=0.204 Sum_probs=97.0
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHhh---c---cCCCChhhHHHHHchhHH-hHHhHhcCCCCcccccccCCCCch
Q 004593 324 PCFPPRYEIFQLMVNLYTERFIQMLRLLSD---R---ANELTNIEILKVTGWVVE-YQDNLIGLGVDESLAQVCSESGAM 396 (743)
Q Consensus 324 ~cfPp~~~I~~~y~~~YH~~l~~~L~~l~~---~---~~~l~~~~ll~ll~Wv~~-Y~~~m~~l~i~~~~l~~ll~~~~~ 396 (743)
+-||.+.++-+.-+...-..+.+-++-.++ . ....+---+..-+.|..+ |-.++..+. +.++. .+.-+
T Consensus 668 nqfpqelnvgk~saevmw~lfaqdmk~aleeh~k~~~cksadymnl~fkvk~ly~eyv~dlp~~k---~~vpe--ypawf 742 (1283)
T KOG1011|consen 668 NQFPQELNVGKLSAEVMWSLFAQDMKYALEEHAKKKLCKSADYMNLHFKVKWLYNEYVADLPTYK---SSVPE--YPAWF 742 (1283)
T ss_pred hhChhhhccccchHHHHHHHHHHHHHHHHHHHhhhccccCcchhheeeehhhhHHHHHhhchhhh---ccCCC--chHHH
Confidence 348888887665555333333333332111 0 111222334444566655 555554332 11110 01235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCCCCcccccchhHHHHHHHHHHHHHhhc-chhhHH-HHHHHHHHHH
Q 004593 397 DPLMNAYVERMQATTKKWYLNILDADKVQ-PPKRTEDGKLYTPAAVDLFRILGEQVQIVRDN-STDVML-YRISLAIIQV 473 (743)
Q Consensus 397 ~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~-~Pe~d~dg~~~t~~~vdlfqmi~q~l~~a~~~-~~~~~~-~~v~~~~~~~ 473 (743)
+++.-+++.--..--.+.+.++++.++.. =|.+ .+...+|.+.+|+|.-+|+.+...... +.++.. +.......+.
T Consensus 743 ~pfv~qwldenee~s~dflrga~e~dkkdgf~qt-seha~fs~svvdvftqlnqsfeiikklecpdp~i~ah~mrrfakt 821 (1283)
T KOG1011|consen 743 EPFVMQWLDENEEVSMDFLRGALERDKKDGFQQT-SEHALFSCSVVDVFTQLNQSFEIIKKLECPDPEIAAHYMRRFAKT 821 (1283)
T ss_pred HHHHHHHhccchHHHHHHHHhHhhcccccCcccc-chhhhhcchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 56666677666666667888888877542 3444 444566889999999999999887743 333221 1122223334
Q ss_pred HHHHHHHHHHHhcCCCCCC-C-cchhhheecccHhhHHHHHHH
Q 004593 474 MIDFQAAERQRLAEPASEI-G-LEPLCAIINNNLRCYDLAMEL 514 (743)
Q Consensus 474 l~~f~~~y~~~l~~~~~~~-~-~~~liA~~N~~~~~~e~~~~l 514 (743)
+.+.+-.|.+.+...++.. . ...-|.+.||....+-..+.+
T Consensus 822 i~kvllqyadivskdfp~y~~keklpcilmnnvqqlrvqlekm 864 (1283)
T KOG1011|consen 822 INKVLLQYADIVSKDFPKYCHKEKLPCILMNNVQQLRVQLEKM 864 (1283)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCeeeeccHHHHHHHHHHH
Confidence 4444555666665544321 1 223477788876554444433
No 25
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.30 E-value=83 Score=37.74 Aligned_cols=106 Identities=15% Similarity=0.236 Sum_probs=76.1
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh-HHHH
Q 004593 24 LPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH-NQIK 102 (743)
Q Consensus 24 ~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~-~~Ik 102 (743)
..++-+-++--+.++...-.+-++.|...|..+-+...+|+..-.++...|+..++.+..++.-...|...+..= +.++
T Consensus 41 ~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLq 120 (982)
T KOG3691|consen 41 GSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQ 120 (982)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 344444444455555555555589999999999999999999999999999999999999998888888777544 6677
Q ss_pred HHHHHHHHHHHH---HHHHhhhhcHhHHHH
Q 004593 103 LLSNARNNLNTT---LKDVEGMMSISVEAA 129 (743)
Q Consensus 103 ~l~~~~~nl~~~---i~~l~~l~~~~~~~~ 129 (743)
++-.-.-..+.+ +.+++.+..+|+.++
T Consensus 121 klw~~~~q~K~Vi~vL~eieEl~qvPqkie 150 (982)
T KOG3691|consen 121 KLWAENSQYKKVIEVLKEIEELRQVPQKIE 150 (982)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 764443344444 455556666666554
No 26
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=84.98 E-value=16 Score=30.69 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=51.1
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 14 AVREVAKLLTLPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQ 89 (743)
Q Consensus 14 a~~~v~~ll~~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~ 89 (743)
|-.++.++|++.. +..|..+.+++.+++...+..|+..|-..-...=.+-+.+..-..++.+++..+.++...++
T Consensus 8 ~~~~~~~~l~~~s-~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 8 VDEYFKDLLKNSS-IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred HHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777887766 78999999999999999999999998876555444444444444444444444444444333
No 27
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=84.35 E-value=37 Score=35.27 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=70.5
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHH----HHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 14 AVREVAKLLTLPDQLQFIGDMKADYIA----RQQANDAQLSTMVA--EQIEQAQTGLESLALSQNTINQLRENFISIERY 87 (743)
Q Consensus 14 a~~~v~~ll~~p~~L~kl~~~~~~~~~----k~~~vd~~Lk~~vq--~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~ 87 (743)
|...++.-++..-=|+.|+.+..++.- ....|++||.+.+- .-+...+.|--.=.+....|.+|-+-+..-+-.
T Consensus 213 ~~~~lsa~~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~~~s~~Da~~d~KV~elye~~qrw~pi 292 (371)
T KOG3958|consen 213 AQNPLSAGLQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKHKASVEDADTDSKVHELYETIQRWSPI 292 (371)
T ss_pred ccCchhhccCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHhhhhH
Confidence 334444556666667777777776653 33344444444332 112222333333335566788888888888888
Q ss_pred HHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004593 88 CQECQTLIENHNQIKLLSNARNNLNTTLKDVEGM 121 (743)
Q Consensus 88 ~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l 121 (743)
|+--+..|+++..|++++---.||.+.++.++..
T Consensus 293 ~stLP~~V~rl~al~~LHeqa~~Fa~~lthl~t~ 326 (371)
T KOG3958|consen 293 ASTLPELVQRLVALKQLHEQAMQFAQLLTHLDTT 326 (371)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998877766653
No 28
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=82.91 E-value=34 Score=33.94 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh-HHHHHHHHHHHHHHHHHHHHhhhh
Q 004593 44 ANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH-NQIKLLSNARNNLNTTLKDVEGMM 122 (743)
Q Consensus 44 ~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~~i~~l~~l~ 122 (743)
.+..+=...++.+++.++.-+..++.+...+..++- ..++...++-+..+++.. ++-+++..+++-+..
T Consensus 64 gls~~e~~~~~~~l~ea~~~i~~i~~~~~~i~~~~~-~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~--------- 133 (199)
T PF10112_consen 64 GLSDREYEYIREILEEAKEKIRRIEKAIKRIRDLEM-IEKVSRIEKIARRIFKYVEKDPERLTQARKFLYY--------- 133 (199)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHH---------
Confidence 333333445777777777777777777777765542 233444444444444444 344566666666644
Q ss_pred cHhHHHHHHHhhhcCChhHHHHHHHHHHHHhHHHHHHHHhhcChhHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Q 004593 123 SISVEAAEARDSLGDDKELVNTYERLTALDGKRRFALAAAASHIDEVGRLREYFEDVDQTWETFEKTLWTHISNFY 198 (743)
Q Consensus 123 ~~~~~~~~~~~~l~~~~nLL~ah~~L~~Le~~rd~~l~~~~~~~~~~~~l~~~f~~v~~l~~~f~~~i~~~~~~~l 198 (743)
-+|..++ |++.|..|.. +...+.+....+.+.-+-++.+.+.|++++..++.+-+
T Consensus 134 yLp~~~~-----------l~~kY~~l~~----------~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~l~~~d~ 188 (199)
T PF10112_consen 134 YLPTAVK-----------LLEKYAELES----------QPVKSEEIKQSLEEIEETLDTLNQAFEKDLDKLLEDDI 188 (199)
T ss_pred HhhHHHH-----------HHHHHHHHHh----------ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2333332 4444443331 11122222345566667788888888888877776544
No 29
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=81.18 E-value=96 Score=37.33 Aligned_cols=166 Identities=17% Similarity=0.148 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhHHHH-HHHHHH
Q 004593 30 FIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENHNQIK-LLSNAR 108 (743)
Q Consensus 30 kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik-~l~~~~ 108 (743)
.++.+..++.++.+.+|+.--..+-+.-..+..-+..+..|...+.++...+...+........-++.++.=. .+-...
T Consensus 2 dad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~ 81 (701)
T PF09763_consen 2 DADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQS 81 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Confidence 4688899999999999998888887777778888888999999999998888888777776666555553322 355566
Q ss_pred HHHHHHHHHHhhhhcHhHHHHHHHhhhcCC----hh-HHHHHHHHHHHHhHHHHHHHHhh-------cChhHHHHHHHHh
Q 004593 109 NNLNTTLKDVEGMMSISVEAAEARDSLGDD----KE-LVNTYERLTALDGKRRFALAAAA-------SHIDEVGRLREYF 176 (743)
Q Consensus 109 ~nl~~~i~~l~~l~~~~~~~~~~~~~l~~~----~n-LL~ah~~L~~Le~~rd~~l~~~~-------~~~~~~~~l~~~f 176 (743)
.|-......|+.|..--+.-++....|..+ ++ +-.+...+..|-. +|..+. ........+.+.-
T Consensus 82 ~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~----Al~~i~~~~~~~~~~~~~M~Av~er~ 157 (701)
T PF09763_consen 82 ANQKLLLNELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYK----ALKAIRPDLEKLDPGLGQMRAVKERR 157 (701)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHH----HHHhcccccccCCCcHHHHHHHHHHH
Confidence 677766677776643322112223333222 22 4444333333332 222211 1122355677777
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHH
Q 004593 177 EDVDQTWETFEKTLWTHISNFYK 199 (743)
Q Consensus 177 ~~v~~l~~~f~~~i~~~~~~~l~ 199 (743)
+..+.+...|.+++...+.+.+.
T Consensus 158 ~~~~~~~~~F~~r~~~~l~~~F~ 180 (701)
T PF09763_consen 158 EEYEKVSDKFCKRLSRFLNNMFK 180 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887777777663
No 30
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.09 E-value=41 Score=30.81 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHH
Q 004593 60 AQTGLESLALSQNTIN-QLRENFISIERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAA 129 (743)
Q Consensus 60 ~~~gl~~L~~a~~~v~-~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~ 129 (743)
+..+|+++.++....+ ++.+++..++...+++.+..+.++ +++..+++++.+.-..++.++.+....+
T Consensus 48 v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~--~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIK--DEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433 444555555555555544444332 2456666666665555555555544433
No 31
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=78.66 E-value=87 Score=34.68 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHh
Q 004593 70 SQNTINQLRENFISIERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVE 119 (743)
Q Consensus 70 a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~ 119 (743)
....|.+|.+.+..++..|.--+.++.+++.++.++.--.+|..++..++
T Consensus 293 ~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le 342 (388)
T PF04912_consen 293 QESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELE 342 (388)
T ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666655555555555444444
No 32
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.17 E-value=2.5e+02 Score=34.14 Aligned_cols=114 Identities=13% Similarity=0.210 Sum_probs=80.5
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHhHHh
Q 004593 25 PDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLA-------LSQNTINQLRENFISIERYCQECQTLIEN 97 (743)
Q Consensus 25 p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~-------~a~~~v~~i~~~~~~i~~~~~~~~~~v~~ 97 (743)
+..+..=..+..|+..=..-||-.|-..+..-.|..-.++..++ ++...|+++++++..|+..| +..
T Consensus 235 ~~~~~~~~~LQekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~------~~~ 308 (951)
T KOG2115|consen 235 AERLEANSALQEKLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAEN------VRK 308 (951)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHh
Confidence 34555566667777777777787777777766666555555444 45556666666666666544 345
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcCChhHHHHH
Q 004593 98 HNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDDKELVNTY 145 (743)
Q Consensus 98 ~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~~~nLL~ah 145 (743)
-..|-++..++.|+..+...|+-|-.+.+.-...+.+++++. +..|-
T Consensus 309 s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~~~d-~~~AL 355 (951)
T KOG2115|consen 309 SIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLSTQD-FVGAL 355 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccc-HHHHH
Confidence 567888999999999999999999999888888888887775 44443
No 33
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=71.14 E-value=98 Score=30.97 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhHHhHHhh-HHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcCChhHHHHHHHHHHHHhHHHHHH
Q 004593 81 FISIERYCQECQTLIENH-NQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDDKELVNTYERLTALDGKRRFAL 159 (743)
Q Consensus 81 ~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~~~nLL~ah~~L~~Le~~rd~~l 159 (743)
+.+..+.|.+..-..+.+ .-.+.++.|.++|..++..+.+-+.-...++ +.+.=.+.|-.--..|.+++++|+.++
T Consensus 11 le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~d---De~~I~~~L~kF~~~L~ei~~~r~~L~ 87 (207)
T cd07636 11 LDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETD---DEICIARSLQEFAAVLRNLEDERTRMI 87 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc---cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344 4467889999999888888775322110000 000000212223334568888998877
Q ss_pred HHhh
Q 004593 160 AAAA 163 (743)
Q Consensus 160 ~~~~ 163 (743)
.+++
T Consensus 88 ~qa~ 91 (207)
T cd07636 88 ENAS 91 (207)
T ss_pred HHHH
Confidence 7665
No 34
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=68.11 E-value=2.8e+02 Score=34.27 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHHHHHHhhcChh--HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 004593 145 YERLTALDGKRRFALAAAASHID--EVGRLREYFEDVDQTWETFEKTLWTHISNFYK 199 (743)
Q Consensus 145 h~~L~~Le~~rd~~l~~~~~~~~--~~~~l~~~f~~v~~l~~~f~~~i~~~~~~~l~ 199 (743)
+..|.++|..|++-+..-+.+.+ |.+-|..+=.+|..+.+.+.+-+...+++++.
T Consensus 1210 ~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~sln 1266 (1439)
T PF12252_consen 1210 NDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLN 1266 (1439)
T ss_pred HhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888887776665555 33334444444444444444445444554443
No 35
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=68.03 E-value=1.2e+02 Score=29.81 Aligned_cols=96 Identities=14% Similarity=0.231 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHh
Q 004593 31 IGDMKADYIARQQANDAQLS----------TMVAEQIEQAQTGLESLALSQNTIN---------QLRENFISIERYCQEC 91 (743)
Q Consensus 31 l~~~~~~~~~k~~~vd~~Lk----------~~vq~ql~~~~~gl~~L~~a~~~v~---------~i~~~~~~i~~~~~~~ 91 (743)
+-.+++++....+.|+.+|+ ..|+++...-+.-+..+..++..+. +..+.-.++.....+-
T Consensus 25 L~~~~~~v~~a~s~I~~~l~rR~dli~~Lv~~v~~y~~~E~~~l~~v~~~R~~~~~~~~~~~~~~~~~~~~~l~~al~~l 104 (186)
T PF04011_consen 25 LVRLRNAVQEAWSNIDVQLQRRHDLIPNLVEIVKSYAKHEKETLTKVTKARSQANNLSDSADIQEFQQAEAELSQALSRL 104 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH---H--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444 3344444433334444444433333 2223333344444444
Q ss_pred HHhHHhhHHHH-----------------HHHHHHHHHHHHHHHHh-hhhcHhH
Q 004593 92 QTLIENHNQIK-----------------LLSNARNNLNTTLKDVE-GMMSISV 126 (743)
Q Consensus 92 ~~~v~~~~~Ik-----------------~l~~~~~nl~~~i~~l~-~l~~~~~ 126 (743)
...++.|++++ ++..+++.++.+....+ .+.++|.
T Consensus 105 ~~~~e~yP~Lka~~~~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~FP~ 157 (186)
T PF04011_consen 105 LAVVENYPELKADENFQQLMAQLEETENRIAAARRAYNDAVRDYNTAIRQFPT 157 (186)
T ss_dssp HHHHTT-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 45556666665 24455555555555555 3344443
No 36
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.17 E-value=1.3e+02 Score=29.96 Aligned_cols=82 Identities=10% Similarity=0.034 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcCChhHHHHHH
Q 004593 67 LALSQNTINQLRENFISIERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDDKELVNTYE 146 (743)
Q Consensus 67 L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~~~nLL~ah~ 146 (743)
+...-.+|.++...+.++-+.|...-+ --+..+.+.++|..++..+.+... .+ .....+ |..--.
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~~------agk~~~~a~~~F~~~L~~f~~~~~-~D-------~~i~~~-l~kFs~ 68 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGMLE------GGRHYCAASRAFVDGLCDLAHHGP-KD-------PMMAEC-LEKFSD 68 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccCC-CC-------chhHHH-HHHHHH
Confidence 334445566666666666666654433 345678888888887777765211 11 001111 322233
Q ss_pred HHHHHHhHHHHHHHHhh
Q 004593 147 RLTALDGKRRFALAAAA 163 (743)
Q Consensus 147 ~L~~Le~~rd~~l~~~~ 163 (743)
.|.+++++|+.++.+++
T Consensus 69 ~l~ei~~~~~~Ll~~~~ 85 (200)
T cd07639 69 GLNHILDSHAELLEATQ 85 (200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677888887777654
No 37
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=64.88 E-value=65 Score=27.62 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhHHHH
Q 004593 48 QLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENHNQIK 102 (743)
Q Consensus 48 ~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik 102 (743)
+.+..++++++-....++.|..+-+.++.+..++..++.....+..++..+..-.
T Consensus 12 rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~ 66 (92)
T PF03908_consen 12 RTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRD 66 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999988885443
No 38
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=62.89 E-value=1.1e+02 Score=30.69 Aligned_cols=123 Identities=12% Similarity=0.089 Sum_probs=84.8
Q ss_pred hHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcC--chHHHHHHHHHHHHHHHHHhcccchhhhhh
Q 004593 565 YILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLLSQKNYI--KEITIERMREDEEAIIEAFREYVSVNKVES 642 (743)
Q Consensus 565 ~I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~--~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~ 642 (743)
|+-.|-+.|+..|. +.-|+.|..++++++-+. .|++-..-+ .+.+|--+ +.....|+..|++.++.
T Consensus 1 TVsDtKr~F~~~~~-~pI~siYrrvv~ELLVe~------HLl~~n~~F~yD~lfalG~---vt~fd~fm~GY~p~~~~-- 68 (216)
T PF11264_consen 1 TVSDTKRAFYKAFP-RPIPSIYRRVVDELLVEL------HLLSVNKDFQYDPLFALGL---VTVFDRFMQGYPPEEDK-- 68 (216)
T ss_pred ChhHHHHHHHHhCC-CCCcHHHHHHHHHHHHHH------HHHHhccCceeCchHHhhH---HHHHHHHhcCCCChhHH--
Confidence 35567888888888 688999999999887763 344333222 45666555 35666777788886643
Q ss_pred hhhhHHHHHHhhccCChhhHHHHHHHHhhhCCCCCHHHHHHHHHHhcCCChHhHHHHHH
Q 004593 643 KVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALREAIPRKDAKEIVQ 701 (743)
Q Consensus 643 ~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL~~R~Dl~r~~~~~il~ 701 (743)
-.++..+..=++ .||..+..+-..+....-..|...+...|.-.++-..+....++.
T Consensus 69 -~~If~Alc~a~~-~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~ 125 (216)
T PF11264_consen 69 -DSIFNALCQALG-FDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQ 125 (216)
T ss_pred -HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHH
Confidence 356666666667 478888888888888888888999999988764444444444443
No 39
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.65 E-value=90 Score=28.60 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCCCch-hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 11 KEAAVREVAKLLTLPDQL-QFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQ 89 (743)
Q Consensus 11 ~~~a~~~v~~ll~~p~~L-~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~ 89 (743)
-..|+..|+. +-+++ +.|..-|+.+++|+..++.+|-.... .-+..+++|.++++.+..|+....
T Consensus 41 m~~A~~~v~k---ql~~vs~~l~~tKkhLsqRId~vd~klDe~~e-----------i~~~i~~eV~~v~~dv~~i~~dv~ 106 (126)
T PF07889_consen 41 MSDAVASVSK---QLEQVSESLSSTKKHLSQRIDRVDDKLDEQKE-----------ISKQIKDEVTEVREDVSQIGDDVD 106 (126)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444443 23444 46888888888888888877654322 122334445555555544444444
Q ss_pred HhHHhHHhh
Q 004593 90 ECQTLIENH 98 (743)
Q Consensus 90 ~~~~~v~~~ 98 (743)
....+|..+
T Consensus 107 ~v~~~V~~L 115 (126)
T PF07889_consen 107 SVQQMVEGL 115 (126)
T ss_pred HHHHHHHHH
Confidence 444444333
No 40
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.36 E-value=2.7e+02 Score=30.96 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=14.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 004593 38 YIARQQANDAQLSTMVAEQIEQAQ 61 (743)
Q Consensus 38 ~~~k~~~vd~~Lk~~vq~ql~~~~ 61 (743)
-.+++..+-.+|++.++++-+.|+
T Consensus 360 ei~~~eel~~~Lrsele~lp~dv~ 383 (521)
T KOG1937|consen 360 EIESNEELAEKLRSELEKLPDDVQ 383 (521)
T ss_pred HHHhhHHHHHHHHHHHhcCCchhH
Confidence 344445566667777776666655
No 41
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=59.87 E-value=1.5e+02 Score=29.52 Aligned_cols=112 Identities=8% Similarity=0.049 Sum_probs=82.2
Q ss_pred hhHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcC--chHHHHHHHHHHHHHHHHHhcccchhhhh
Q 004593 564 EYILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLLSQKNYI--KEITIERMREDEEAIIEAFREYVSVNKVE 641 (743)
Q Consensus 564 ~~I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~--~~~~a~~i~~D~~~l~~~F~~~~s~~~v~ 641 (743)
.|+-.|=+.|+..|. +.-|+.|..++++++-+. .|++-...+ .+.+|--+ +.....|+..|++.++.
T Consensus 3 ~TVsDtKr~F~~~~p-~pI~siYrrvv~ELLVE~------HLl~~n~~f~yD~lfAlGl---vt~fd~fm~GY~Pee~~- 71 (206)
T PLN03060 3 PTVADTKASFLKAYR-KPIPSIYSNVIQELLVQQ------HLMRYNATYKYDPIFALGF---VTVYDQLMDGYPNATDR- 71 (206)
T ss_pred CcHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHH------HHHHhccCceeCchHHhhH---HHHHHHHHcCCCChHHH-
Confidence 467788888999999 799999999999887763 344433322 45666555 35666777788887643
Q ss_pred hhhhhHHHHHHhhccCChhhHHHHHHHHhhhCCCCCHHHHHHHHHHhc
Q 004593 642 SKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALRE 689 (743)
Q Consensus 642 ~~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL~~R~ 689 (743)
-.++..+..=++ .||..+..+-..+....-..+.+.+...|.-.|
T Consensus 72 --~~IF~Alc~a~~-~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~ 116 (206)
T PLN03060 72 --DAIFKAYIEALG-EDPDQYRKDAKKLEEWASSQSASGIADFNSGDG 116 (206)
T ss_pred --HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccc
Confidence 356666676667 478899888888888888888999999988776
No 42
>PRK13266 Thf1-like protein; Reviewed
Probab=59.40 E-value=1.5e+02 Score=30.01 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=83.7
Q ss_pred hhhHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcC--chHHHHHHHHHHHHHHHHHhcccchhhh
Q 004593 563 TEYILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLLSQKNYI--KEITIERMREDEEAIIEAFREYVSVNKV 640 (743)
Q Consensus 563 v~~I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~--~~~~a~~i~~D~~~l~~~F~~~~s~~~v 640 (743)
..|+-.|=+.|+..|. +.-|+.|..++++++-+. .|++-..-+ .+.+|--+ +.....|+..|+|.++
T Consensus 4 ~~TVSDtKr~F~~~~p-~pI~siYrrvv~ELLVEl------HLl~~n~~F~yDplfAlGl---vt~fd~fm~GY~Pee~- 72 (225)
T PRK13266 4 RRTVSDSKRAFYAAFP-RPINSIYRRVVDELLVEL------HLLSVNSDFKYDPLFALGL---VTVFDRFMQGYRPEEH- 72 (225)
T ss_pred CCcHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHH------HHHHhccCceeCchHHhhH---HHHHHHHHcCCCChHH-
Confidence 4567788888999999 799999999999887763 344433322 45666555 3566677778888664
Q ss_pred hhhhhhHHHHHHhhccCChhhHHHHHHHHhhhCCCCCHHHHHHHHHHhcCC
Q 004593 641 ESKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALREAI 691 (743)
Q Consensus 641 ~~~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL~~R~Dl 691 (743)
.-.++..+..=++ .||..+..+-..+....-..+.+.+...|.-.++-
T Consensus 73 --~~~IF~Alc~a~~-~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~ 120 (225)
T PRK13266 73 --KDSIFNALCQAVG-FDPEQLRQDAERLLELAKGKSLKEILSWLTQKALG 120 (225)
T ss_pred --HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccc
Confidence 3456666666667 47889988888888888888999999999877643
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=58.78 E-value=4.5e+02 Score=32.78 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=7.8
Q ss_pred HHHHHHHHhcCCCc
Q 004593 598 IVLFIDHLLSQKNY 611 (743)
Q Consensus 598 v~~Yi~~l~k~~~~ 611 (743)
...++.++++.|.+
T Consensus 943 ~~~~F~~~l~~R~~ 956 (1074)
T KOG0250|consen 943 ATEEFDALLGKRGF 956 (1074)
T ss_pred HHHHHHHHhhcccc
Confidence 34556666666543
No 44
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=58.13 E-value=2.7e+02 Score=30.09 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=54.8
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHhHHhh-
Q 004593 27 QLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQ-------NTINQLRENFISIERYCQECQTLIENH- 98 (743)
Q Consensus 27 ~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~-------~~v~~i~~~~~~i~~~~~~~~~~v~~~- 98 (743)
+|+.+..--.++..++++++.+|.+-..+.-...-..-+.+.... ..+..+...+.++...|.......++.
T Consensus 8 ~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~ 87 (338)
T PF04124_consen 8 SLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKIS 87 (338)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666778888888888888777765554444333333333 344444444555555555544444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcHhHHHH
Q 004593 99 NQIKLLSNARNNLNTTLKDVEGMMSISVEAA 129 (743)
Q Consensus 99 ~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~ 129 (743)
...+....+.+|. +.+-.+..+|..++
T Consensus 88 ~~r~~~~~~l~~~----~~l~diLElP~Lm~ 114 (338)
T PF04124_consen 88 EERKKASLLLENH----DRLLDILELPQLMD 114 (338)
T ss_pred HHHHHHHHHHHHH----HHHHHHHhhHHHHH
Confidence 3333344444444 34556677776655
No 45
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=57.26 E-value=4e+02 Score=31.73 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=104.3
Q ss_pred HHHHHHHHhCChhhHHHHhhccccccCCch------------hhhhHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004593 532 LFHLISVIFDDPEVQQLFLKLYSKEWSDGQ------------VTEYILPTFSDYFADVKMFVEERSFRRFVEACLEETIV 599 (743)
Q Consensus 532 ~~~l~~~if~d~~l~p~~~~lft~~W~~~~------------~v~~I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~ 599 (743)
+..++..++.. +++..+..+..+|..-+ .+--.+.++++++.++...|.|.-|..++.-+...+.+
T Consensus 563 ~~~~iv~~l~~--~~~~~r~y~k~~w~s~~~~~~~~~~svS~~iv~~ld~Lr~~l~~l~~~l~~~~fs~~~~~l~~~idv 640 (737)
T KOG2218|consen 563 MLKLIVHLLQN--LKDLLRNYKKNKWVSLEESENIGPLSVSREIVNLLDGLRRHLDDLEENLNPLDFSAIWRNLQENIDV 640 (737)
T ss_pred HHHHHHHHHHh--hHHHHHhhhhcchhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhhhhH
Confidence 34444445543 78888888887787521 12334568889999999999999999999888888888
Q ss_pred HHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhHHHHHHhhccCChh-----hHHHHHHHHhhhC-
Q 004593 600 LFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMRELASANSVD-----AFALIYTNVLEHQ- 673 (743)
Q Consensus 600 ~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~~~d~~-----~i~~~~~~l~~~y- 673 (743)
.|..-++-+...++..++.+...|+..|...|..|.-... ..|..+.-+..|+++...+ .+..+....++.|
T Consensus 641 ~~~~e~il~~~~f~~~~~~~f~~Da~~L~~~fs~yc~rp~--~~f~~l~e~~~vL~l~e~~~~l~~~Ls~~~~~~le~~~ 718 (737)
T KOG2218|consen 641 YVFEEIILKNHKFESSGLFQFVHDAKRLLEVFSEYCVRPL--LKFKSLRELVCVLKLEEGELRLKDALSRPGTKCLEELG 718 (737)
T ss_pred HHHHHHHHhhhhcCchHHHHHHHHHHHHHHHhcccccchh--HHHHHHHhhhhhhhhcccHhhhhhhhcccHHHHHHHhh
Confidence 8777665454446889999999999999999999854332 3566666666676654432 1112233344433
Q ss_pred -CCCCHHHHHHHHHHhc
Q 004593 674 -PDCPPEVVERLVALRE 689 (743)
Q Consensus 674 -PD~s~~~v~aiL~~R~ 689 (743)
..+++..++.+|..|-
T Consensus 719 i~~Ls~~di~~~l~~rv 735 (737)
T KOG2218|consen 719 IKYLSDQDIEDVLYRRV 735 (737)
T ss_pred hhhcCHHHHHHHHHHHh
Confidence 3456666666666553
No 46
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=56.42 E-value=26 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=20.2
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHH-hcCC
Q 004593 665 IYTNVLEHQPDCPPEVVERLVAL-REAI 691 (743)
Q Consensus 665 ~~~~l~~~yPD~s~~~v~aiL~~-R~Dl 691 (743)
.+..+...||+++.+.|+++|.. .||+
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~v 31 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGDV 31 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTTH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCH
Confidence 45677788999999999999954 4444
No 47
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=55.25 E-value=22 Score=32.78 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh-HHHHHHHHHH
Q 004593 30 FIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH-NQIKLLSNAR 108 (743)
Q Consensus 30 kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~ 108 (743)
.|+.+++.+..-...+++.|-.-|-.-....-.--..|......|.+++..+..+........+.+..- ..|...-..+
T Consensus 27 ~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~ 106 (133)
T PF06148_consen 27 SLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEER 106 (133)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566665666666555555433322222222333344455555666655555555554444444 5566566666
Q ss_pred HHHHHHHHHHhhhhcHhHHHHHHHh
Q 004593 109 NNLNTTLKDVEGMMSISVEAAEARD 133 (743)
Q Consensus 109 ~nl~~~i~~l~~l~~~~~~~~~~~~ 133 (743)
+++......++.+..+...+.+.+.
T Consensus 107 ~~l~~~k~~l~~~l~~~~~~~kle~ 131 (133)
T PF06148_consen 107 KELREEKALLKLLLDISESLEKLED 131 (133)
T ss_dssp HHHHHHHHT-SSSSHHH--------
T ss_pred HHHHHHHHHHHHHHHhhhhcccccc
Confidence 6666656666666666555555443
No 48
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=54.67 E-value=1.7e+02 Score=31.54 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=5.7
Q ss_pred HHHHHHHHhhcHH
Q 004593 168 EVGRLREYFEDVD 180 (743)
Q Consensus 168 ~~~~l~~~f~~v~ 180 (743)
+...|..-|..++
T Consensus 277 Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 277 EVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 49
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=52.93 E-value=4.4e+02 Score=30.87 Aligned_cols=137 Identities=14% Similarity=0.136 Sum_probs=71.9
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHH----HHhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 004593 15 VREVAKLLTLPDQLQFIGDMKADYIA----RQQANDAQLSTMVAEQIEQ---------AQTGLESLALSQNTINQLRENF 81 (743)
Q Consensus 15 ~~~v~~ll~~p~~L~kl~~~~~~~~~----k~~~vd~~Lk~~vq~ql~~---------~~~gl~~L~~a~~~v~~i~~~~ 81 (743)
+.+|..|==..+++++.+.+++.... ....|+..|..+-. ++++ ....-..|..+...++.|.+.+
T Consensus 50 l~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~-~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l 128 (569)
T PRK04778 50 LEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEE-LNDKFRFRKAKHEINEIESLLDLIEEDIEQILEEL 128 (569)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554467777888888877654 55566666654422 2221 2222233444445555555555
Q ss_pred HHHHHHHHHhHHhH----HhhHHHHH-HHHHHHHHHHHHHHHh-hhhcHhHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 004593 82 ISIERYCQECQTLI----ENHNQIKL-LSNARNNLNTTLKDVE-GMMSISVEAAEARDSLGDDKELVNTYERLTALDG 153 (743)
Q Consensus 82 ~~i~~~~~~~~~~v----~~~~~Ik~-l~~~~~nl~~~i~~l~-~l~~~~~~~~~~~~~l~~~~nLL~ah~~L~~Le~ 153 (743)
.++...-+++...| ..|+.+|+ +..-+-.|+.++..++ .|-.+.....+-..+...|. .+.|+..|..++.
T Consensus 129 ~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd-~~~A~e~l~~l~~ 205 (569)
T PRK04778 129 QELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGD-YVEAREILDQLEE 205 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 55554444444333 33344443 2222333455555555 44444444444555555665 7788887776665
No 50
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.16 E-value=5.5e+02 Score=32.04 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 004593 65 ESLALSQNTINQLRENFISIERYCQECQTLIENH 98 (743)
Q Consensus 65 ~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~ 98 (743)
..+..+++++..+.+.+...+..-+.++..+.+|
T Consensus 539 ~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~ 572 (1041)
T KOG0243|consen 539 RSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDF 572 (1041)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccccHHHHHHH
Confidence 3455566666666666666666666666666666
No 51
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=52.10 E-value=32 Score=24.79 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=21.8
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHH-HhcCC
Q 004593 664 LIYTNVLEHQPDCPPEVVERLVA-LREAI 691 (743)
Q Consensus 664 ~~~~~l~~~yPD~s~~~v~aiL~-~R~Dl 691 (743)
..+..|...||+++.+.|+.+|. ..||+
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~v 32 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNV 32 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCH
Confidence 34567777899999999999999 44444
No 52
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=50.17 E-value=4.8e+02 Score=30.51 Aligned_cols=66 Identities=9% Similarity=0.172 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHhHHhhH
Q 004593 34 MKADYIARQQANDAQLSTMV----AEQIEQA------QTGLESLALSQNTINQLR-ENFISIERYCQECQTLIENHN 99 (743)
Q Consensus 34 ~~~~~~~k~~~vd~~Lk~~v----q~ql~~~------~~gl~~L~~a~~~v~~i~-~~~~~i~~~~~~~~~~v~~~~ 99 (743)
+|+++.++...++.+-..-. ...+..+ .........-++.-.+|. ..+.+|+...-+++..+..|+
T Consensus 19 ~rk~~~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~r 95 (560)
T PF06160_consen 19 YRKRYYKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYR 95 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc
Confidence 34555555555555444332 2222222 233444444555555555 446666666666666666664
No 53
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.90 E-value=4.8e+02 Score=30.43 Aligned_cols=39 Identities=0% Similarity=0.083 Sum_probs=30.4
Q ss_pred hhh-HHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004593 563 TEY-ILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLF 601 (743)
Q Consensus 563 v~~-I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Y 601 (743)
++. +..+..-+++.+...+.|...+..|.+....|+.-|
T Consensus 579 fd~~l~~~~~~~lpq~q~l~sp~~r~~i~kr~~~~~~~aY 618 (655)
T KOG3758|consen 579 FDMFLHAPLNLTLPQLQQLTSPMVRDEICKRSAKKFVLAY 618 (655)
T ss_pred HHHHhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 344 455666777777778888889999999999888877
No 54
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=49.57 E-value=2.3e+02 Score=28.37 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004593 99 NQIKLLSNARNNLNTTLKDVEG 120 (743)
Q Consensus 99 ~~Ik~l~~~~~nl~~~i~~l~~ 120 (743)
.-.+.++.|.++|..++..+.+
T Consensus 30 ~a~k~~~~a~~~Fa~~L~~f~~ 51 (207)
T cd07635 30 AATKSLSAAQRKFAHSLRDFKF 51 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566889999999888888775
No 55
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=49.30 E-value=5.9e+02 Score=31.29 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHhHHhhHHHHHHHHHH
Q 004593 32 GDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQN---TINQLRENFISIERYCQECQTLIENHNQIKLLSNAR 108 (743)
Q Consensus 32 ~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~---~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~ 108 (743)
.....++......+...|-..++.++++ .+...|....+ ++++++..|..++....+.+.....++. .++.++
T Consensus 205 ~~~~~~v~~~L~~~~~~lg~~i~~~l~~--~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~--~L~~vK 280 (806)
T PF05478_consen 205 SELKDHVSSDLDNIGSLLGGDIQDQLGS--NVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRD--GLRGVK 280 (806)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3456666666666666666666666653 33344444444 6667777776666666665555444421 245555
Q ss_pred HHHHHHHHH
Q 004593 109 NNLNTTLKD 117 (743)
Q Consensus 109 ~nl~~~i~~ 117 (743)
+++..++..
T Consensus 281 ~~L~~~l~~ 289 (806)
T PF05478_consen 281 RDLNNTLQD 289 (806)
T ss_pred HHHHHHHHh
Confidence 555554433
No 56
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=47.72 E-value=4.6e+02 Score=31.43 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 004593 53 VAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH 98 (743)
Q Consensus 53 vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~ 98 (743)
++.....+..-+.-+..++..+..+++.+.+|+....+...+|+.|
T Consensus 31 ~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~ 76 (683)
T PF08580_consen 31 VKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVY 76 (683)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 3334444555556666677777777777777777666666666555
No 57
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=47.42 E-value=1.8e+02 Score=26.77 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=24.4
Q ss_pred chhhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHh
Q 004593 3 SEDLGVEAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQ 43 (743)
Q Consensus 3 ~~~~~~~A~~~a~~~v~~ll~~p~~L~kl~~~~~~~~~k~~ 43 (743)
+......|+.+=-+|=.+|..|.++...|..+|..+..-+.
T Consensus 33 l~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~ 73 (132)
T PF07926_consen 33 LESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQ 73 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666666666666555443
No 58
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=46.22 E-value=76 Score=26.17 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 55 EQIEQAQTGLESLALSQNTINQLRENF 81 (743)
Q Consensus 55 ~ql~~~~~gl~~L~~a~~~v~~i~~~~ 81 (743)
.+++..+..+..|+....+|.++.+++
T Consensus 18 ~KVdaLq~~V~~l~~~~~~v~~l~~kl 44 (75)
T PF05531_consen 18 DKVDALQTQVDDLESNLPDVTELNKKL 44 (75)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 344444444444444444444444443
No 59
>PHA03332 membrane glycoprotein; Provisional
Probab=45.76 E-value=4.4e+02 Score=32.69 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh-HHHHHHH
Q 004593 60 AQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH-NQIKLLS 105 (743)
Q Consensus 60 ~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~ 105 (743)
+...+++|-.+..++.++++.|.+.++.-++..+.+.++ ..|-+++
T Consensus 879 a~~~~~~llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kis 925 (1328)
T PHA03332 879 ATLYVNQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKIS 925 (1328)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444555556666666666665555555554444444 3344433
No 60
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=45.24 E-value=2.9e+02 Score=27.79 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=82.4
Q ss_pred hhhHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcC--chHHHHHHHHHHHHHHHHHhcccchhhh
Q 004593 563 TEYILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLLSQKNYI--KEITIERMREDEEAIIEAFREYVSVNKV 640 (743)
Q Consensus 563 v~~I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~--~~~~a~~i~~D~~~l~~~F~~~~s~~~v 640 (743)
..|+-.|=+.|...|. +.-|+.|..++++++-+. .|++-...+ .+.+|--+ +.....|+..|+|.++.
T Consensus 4 ~~TVSDtKr~F~~~~p-~pI~siYrrvv~ELLVEl------HLl~~n~~F~yDplfAlGl---vt~fd~fm~GY~Pee~~ 73 (214)
T TIGR03060 4 RRTVSDSKRAFHAAFP-RVIPPLYRRVVDELLVEL------HLLSHQSDFKYDPLFALGL---VTVFDRFMEGYRPEEHL 73 (214)
T ss_pred CCcHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHH------HHHHhccCceeCchHHhhH---HHHHHHHHcCCCChHHH
Confidence 3567788888999999 799999999999887763 344433222 45566555 35666777788886643
Q ss_pred hhhhhhHHHHHHhhccCChhhHHHHHHHHhhhCCCCCHHHHHHHHHHhcC
Q 004593 641 ESKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALREA 690 (743)
Q Consensus 641 ~~~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL~~R~D 690 (743)
-.++..+..=++ .||..+..+-..+....-..+.+.+...|.-.++
T Consensus 74 ---~~IF~Alc~a~~-~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~ 119 (214)
T TIGR03060 74 ---DALFDALCNSNG-FDPEQLREDAKQLLEQAKGKGLDEILSWLTQANL 119 (214)
T ss_pred ---HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccc
Confidence 356666666667 4788888888888888888888988888886653
No 61
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=45.20 E-value=1.5e+02 Score=31.02 Aligned_cols=113 Identities=9% Similarity=0.054 Sum_probs=80.8
Q ss_pred hhhhHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcC--chHHHHHHHHHHHHHHHHHhcccchhh
Q 004593 562 VTEYILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLLSQKNYI--KEITIERMREDEEAIIEAFREYVSVNK 639 (743)
Q Consensus 562 ~v~~I~~Tl~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~--~~~~a~~i~~D~~~l~~~F~~~~s~~~ 639 (743)
...|+-+|=+.|+..|. +.-|+.|..++++++-+. .|++-+..+ .+.+|--+ +..+..|+..|++.++
T Consensus 54 ~~~TVSDTKr~F~~~yp-~pIpsiYrrvvdELLVEl------HLLs~n~~F~yDplFALGl---Vtvfd~fm~GY~Pee~ 123 (283)
T PLN00047 54 VPPTVAETKAKFLKSYK-RPIPSIYSTVLQELLVQQ------HLMRYKKTYRYDPVFALGF---VTVYDQLMEGYPSDED 123 (283)
T ss_pred CCCcHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHH------HHHHhccCceeCchhhhhh---HHHHHHHHccCCChHH
Confidence 45677888888999999 799999999999887763 344433222 45566555 3566677788888764
Q ss_pred hhhhhhhHHHHHHhhccCChhhHHHHHHHHhhhCCCCCHHHHHHHHHHh
Q 004593 640 VESKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALR 688 (743)
Q Consensus 640 v~~~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL~~R 688 (743)
. -.++..+..=++ .||..+..+-..+....-..+.+.+...+...
T Consensus 124 ~---~~IF~Alc~a~g-~Dp~qyr~dA~~l~~~A~~~s~~~l~~~l~~~ 168 (283)
T PLN00047 124 R---DAIFKAYIKALG-EDPEQYRKDAAKLEEWARSQTGSSLVDFSSKE 168 (283)
T ss_pred H---HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcc
Confidence 3 356666666667 47888888888888877788888887777644
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=44.09 E-value=7.7e+02 Score=31.16 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 004593 146 ERLTALD 152 (743)
Q Consensus 146 ~~L~~Le 152 (743)
.+|.+|+
T Consensus 1619 q~~~eL~ 1625 (1758)
T KOG0994|consen 1619 QQLGELE 1625 (1758)
T ss_pred HHHHHHH
Confidence 3333333
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.25 E-value=8.2e+02 Score=30.95 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 004593 54 AEQIEQAQTGLE 65 (743)
Q Consensus 54 q~ql~~~~~gl~ 65 (743)
+.+.+.|..+|+
T Consensus 1562 ~~~ae~V~eaL~ 1573 (1758)
T KOG0994|consen 1562 KGQAEDVVEALE 1573 (1758)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 64
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=41.93 E-value=4.8e+02 Score=28.19 Aligned_cols=53 Identities=9% Similarity=0.153 Sum_probs=39.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 37 DYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQ 89 (743)
Q Consensus 37 ~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~ 89 (743)
++.++.+++........++--+-....-..+-++.+.+..+...+.++....+
T Consensus 11 ~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~ 63 (338)
T PF04124_consen 11 SLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLD 63 (338)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447888888887777777777777788888888888888888876654443
No 65
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=41.81 E-value=5.7e+02 Score=29.20 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCCCchh-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 11 KEAAVREVAKLLTLPDQLQ-FIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQ 76 (743)
Q Consensus 11 ~~~a~~~v~~ll~~p~~L~-kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~ 76 (743)
....-..++.+-+.-.||+ ++..+..++.-....++.+|..+-....+..+..++.|...++.+..
T Consensus 346 sqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 346 SQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456677777777886 89999999999999999999988777777788888888877766553
No 66
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=41.24 E-value=1.7e+02 Score=22.87 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 004593 54 AEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLI 95 (743)
Q Consensus 54 q~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v 95 (743)
..-++.+-.+++.|..+...+..+-.++..+..+|......+
T Consensus 15 ~~~~e~vl~nlN~LNRsLE~~i~VGkEF~~V~~LW~~F~~~m 56 (58)
T PF08649_consen 15 SESMESVLNNLNALNRSLESVISVGKEFESVSSLWSQFYNGM 56 (58)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 346788999999999999999999999999999999876554
No 67
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.74 E-value=2.9e+02 Score=28.74 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004593 67 LALSQNTINQLRENFISIE 85 (743)
Q Consensus 67 L~~a~~~v~~i~~~~~~i~ 85 (743)
|++|++.|+++++-+.-++
T Consensus 119 LKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 68
>PHA03332 membrane glycoprotein; Provisional
Probab=38.92 E-value=6.7e+02 Score=31.22 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 004593 104 LSNARNNLNTTLKDVE 119 (743)
Q Consensus 104 l~~~~~nl~~~i~~l~ 119 (743)
...+.+|+++.-+.++
T Consensus 950 ~~~v~~~intLA~ql~ 965 (1328)
T PHA03332 950 FLAVATNFNTLATQLK 965 (1328)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444555544444433
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.83 E-value=4.7e+02 Score=26.86 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=14.1
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHH
Q 004593 173 REYFEDVDQTWETFEKTLWTHISNFY 198 (743)
Q Consensus 173 ~~~f~~v~~l~~~f~~~i~~~~~~~l 198 (743)
..+++.-+.|...+...+...+.+..
T Consensus 159 ~~~~~~~~~L~~~l~~ell~~yeri~ 184 (239)
T COG1579 159 QELSSKREELKEKLDPELLSEYERIR 184 (239)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34555555555555555555555544
No 70
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=37.76 E-value=2.8e+02 Score=24.45 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=39.3
Q ss_pred HHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 35 KADYIARQQANDA-----QLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYC 88 (743)
Q Consensus 35 ~~~~~~k~~~vd~-----~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~ 88 (743)
-.|+..|++.+++ .+...+..|+++...-+..|.++-..|..+-.+-..|-...
T Consensus 3 ~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~I 61 (103)
T PF08654_consen 3 QARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAI 61 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHH
Confidence 3566777777765 56677778888888888888888888888777765554433
No 71
>PF14923 CCDC142: Coiled-coil protein 142
Probab=37.41 E-value=1.6e+02 Score=33.02 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=56.1
Q ss_pred hhhHHhh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhc
Q 004593 563 TEYILPT-FSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFRE 633 (743)
Q Consensus 563 v~~I~~T-l~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~ 633 (743)
+...+.+ +..-++-.+ ++.+..--..+..+...+....+..+++.|.+|+..||-+++.|...+.++..+
T Consensus 278 v~~~v~~vl~PVl~g~q-~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~DF~~Vr~wl~~ 348 (450)
T PF14923_consen 278 VEYVVETVLEPVLQGVQ-GLPPEAQIPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQDFGYVRDWLES 348 (450)
T ss_pred HHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHHHHHHHHHHHHh
Confidence 4444433 344455556 577777777788888889999999999999888999999999999999999987
No 72
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=36.53 E-value=5.6e+02 Score=27.43 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=5.0
Q ss_pred HHHHHHHhHHH
Q 004593 146 ERLTALDGKRR 156 (743)
Q Consensus 146 ~~L~~Le~~rd 156 (743)
..+.+++..++
T Consensus 253 ~~I~~ae~~~~ 263 (312)
T smart00787 253 TEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHH
Confidence 34445555443
No 73
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=35.92 E-value=4.1e+02 Score=25.71 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHhHHhhHHHHHH
Q 004593 29 QFIGDMKADYIARQQANDAQLSTMVAEQIEQ-AQTGLESLALSQNTINQLRENFI---SIERYCQECQTLIENHNQIKLL 104 (743)
Q Consensus 29 ~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~-~~~gl~~L~~a~~~v~~i~~~~~---~i~~~~~~~~~~v~~~~~Ik~l 104 (743)
+-++..+++-..+...+|+.|+..-....+. ++.|+..|.+=.-.+.++.+.+. .+...|......++=+=.+=++
T Consensus 3 ~w~~~~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv 82 (177)
T PF10602_consen 3 EWIEETKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRV 82 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 3477888999999999999999877666554 67888777776666666655543 3444444444444444334456
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 004593 105 SNARNNLNTTLKDVEGMMS 123 (743)
Q Consensus 105 ~~~~~nl~~~i~~l~~l~~ 123 (743)
+...+|...+...+.....
T Consensus 83 ~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 83 AIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 6666666665554444433
No 74
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=35.37 E-value=2.6e+02 Score=23.26 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh-HHHHHHHHHHHHH
Q 004593 56 QIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH-NQIKLLSNARNNL 111 (743)
Q Consensus 56 ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl 111 (743)
||..+...++.+.+ .++..+.+|..|..-|..+..+...+ +.+.|....++=+
T Consensus 9 ~Lr~IN~~ie~~~~---~L~~a~~~~~~v~~~~~~t~~LLd~w~~IlSQte~~~~Ll 62 (78)
T PF08651_consen 9 QLRKINPVIEGLIE---TLRSAKSNMNRVQETVESTNTLLDKWIRILSQTEHTQRLL 62 (78)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 44455588888899999998888888 5556666555543
No 75
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=35.32 E-value=2.3e+02 Score=25.20 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=21.0
Q ss_pred HHhHHhHHhh-HHHHHHHHHHHHHHH-HHHHHhhhh
Q 004593 89 QECQTLIENH-NQIKLLSNARNNLNT-TLKDVEGMM 122 (743)
Q Consensus 89 ~~~~~~v~~~-~~Ik~l~~~~~nl~~-~i~~l~~l~ 122 (743)
.+++...+.+ ..++.=.||+..++. +++.|++||
T Consensus 74 ~~~e~~~e~ik~~lk~d~Ca~~~~P~~V~d~L~~~~ 109 (110)
T PF10828_consen 74 QQSEERRESIKTALKDDPCANTAVPDAVIDSLRRLH 109 (110)
T ss_pred HHHHHHHHHHHHHHccCccccCCCCHHHHHHHHHhh
Confidence 3444555556 445566788887765 566677665
No 76
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.03 E-value=8.2e+02 Score=28.87 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhHHHHH-HHHHHH
Q 004593 32 GDMKADYIARQQANDA-QLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENHNQIKL-LSNARN 109 (743)
Q Consensus 32 ~~~~~~~~~k~~~vd~-~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~-l~~~~~ 109 (743)
+++-.++.|+..++|+ .+.+.+.| =..|..-|+.|..|.+.|.++.+.+..-+.......+.++.+..=+- +...+.
T Consensus 192 eaFaE~L~reLq~LdgANiqsilaS-E~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~ 270 (867)
T KOG2148|consen 192 EAFAERLKRELQALDAANIQSILAS-EPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNV 270 (867)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhcc
Confidence 6778888899988886 33333332 23467778888888888888888888877777777666665543332 233333
Q ss_pred HHHHHHHHHh
Q 004593 110 NLNTTLKDVE 119 (743)
Q Consensus 110 nl~~~i~~l~ 119 (743)
|=...+++++
T Consensus 271 Nn~kL~eEl~ 280 (867)
T KOG2148|consen 271 NNKKLIEELD 280 (867)
T ss_pred chHHHHHHHH
Confidence 4344455444
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.58 E-value=5.3e+02 Score=26.50 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 004593 56 QIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH 98 (743)
Q Consensus 56 ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~ 98 (743)
+-+........+..+.+++..+...+.+++..-...+.-++++
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~ 71 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEI 71 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555554444444444444
No 78
>PF02650 HTH_WhiA: WhiA C-terminal HTH domain; InterPro: IPR023054 This domain is found at the C terminus of the sporulation regulator WhiA. It is predicted to form a DNA binding helix-turn-helix structure []. ; PDB: 3HYI_A.
Probab=32.64 E-value=1.4e+02 Score=25.35 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=36.8
Q ss_pred hhHHHHHHhhccCChhhHHHHHHHHhhhCCCCCHHHHHHHHHHhcCCChHhHHHHHHHHHHHH
Q 004593 645 RVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALREAIPRKDAKEIVQECKEIY 707 (743)
Q Consensus 645 ~~l~~l~~ll~~~d~~~i~~~~~~l~~~yPD~s~~~v~aiL~~R~Dl~r~~~~~il~~~~~~~ 707 (743)
..+..|.+-..+...+.-..++..+.-.|||.|...+..++.- .++|+...--+..+++++
T Consensus 24 ~~I~~i~~~~~~~~l~~~l~~~a~lRl~~Pd~SL~EL~~~~~~--~iSKSgvnhrlrKl~~ia 84 (85)
T PF02650_consen 24 EAIEFIEENNGLDKLPEKLREFAELRLENPDASLKELGELLEP--PISKSGVNHRLRKLKKIA 84 (85)
T ss_dssp HHHHHHHHHT-GGGS-HHHHHHHHHHHH-TTS-HHHHHHTT----T--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHCccccHHHHHHHHcC--cCcHHHHHHHHHHHHHHh
Confidence 3444444443433333344677788889999999999999986 589998888777777654
No 79
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=32.09 E-value=4.4e+02 Score=24.91 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=16.6
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004593 25 PDQLQFIGDMKADYIARQQANDAQLSTMVAE 55 (743)
Q Consensus 25 p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ 55 (743)
|.=|..|+.--+++......+=..|+..+++
T Consensus 51 ~~~L~~LE~~a~~ia~svd~ll~~L~~~L~~ 81 (149)
T PF10157_consen 51 PAVLHDLERDAQAIAESVDSLLRSLRSSLHS 81 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555555555555555
No 80
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=31.86 E-value=7.8e+02 Score=27.64 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=28.4
Q ss_pred hcCCCCchh-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 21 LLTLPDQLQ-FIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLR 78 (743)
Q Consensus 21 ll~~p~~L~-kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~ 78 (743)
++.+-+||. -|+.+|+.+..+.....-+--..|...++.+...+..|.+....++-+-
T Consensus 218 Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~W 276 (424)
T PF03915_consen 218 LLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIW 276 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 344445664 5666666666666666555545555555555555555554444444433
No 81
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=31.56 E-value=8.9e+02 Score=28.26 Aligned_cols=34 Identities=0% Similarity=0.220 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004593 31 IGDMKADYIARQQANDAQLSTMVAEQIEQAQTGL 64 (743)
Q Consensus 31 l~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl 64 (743)
...++..+.+++..+.......++.+|......+
T Consensus 309 ~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~ 342 (582)
T PF09731_consen 309 EEELREEFEREREELEEKYEEELRQELKRQEEAH 342 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777666666666666544443
No 82
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=31.27 E-value=5.8e+02 Score=30.87 Aligned_cols=60 Identities=10% Similarity=0.184 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 004593 29 QFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLA-LSQNTINQLRENFISIERYCQ 89 (743)
Q Consensus 29 ~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~-~a~~~v~~i~~~~~~i~~~~~ 89 (743)
+.|.+....+.+=+.+|+. +...+.+.-.+-+.|-..|+ +....+..+.+.-....+.|.
T Consensus 252 ~~v~~~~~el~~~~~ave~-m~~~L~~~~s~~~~~~~~lr~~~~~sL~~llq~~~c~~~~ca 312 (865)
T KOG4331|consen 252 DYVLSAAQELREMSEAVEN-MNDTLDSLGSQLNDGASKLRERVNASLKVLLQVVLCQKKDCA 312 (865)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHhHHhHHHhhH
Confidence 3444444444444445544 34433333333334444444 334444444444333333443
No 83
>PLN02939 transferase, transferring glycosyl groups
Probab=30.60 E-value=1.2e+03 Score=29.30 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhcCCCCchh-hHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004593 8 VEAKEAAVREVAKLLTLPDQLQ-FIGDMKADYIARQQANDAQLSTMVAE 55 (743)
Q Consensus 8 ~~A~~~a~~~v~~ll~~p~~L~-kl~~~~~~~~~k~~~vd~~Lk~~vq~ 55 (743)
..||..|+..+...|..-+.|. +|. =+.-+.+..|+++|.++|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 192 (977)
T PLN02939 148 NQARLQALEDLEKILTEKEALQGKIN----ILEMRLSETDARIKLAAQE 192 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHhhhhhhhhhhhhhc
Confidence 3588888888877777666664 454 3344555666777766663
No 84
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.46 E-value=4.2e+02 Score=25.55 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhcccchhh-hhhhhhhHHHHHHhhccCChhhHHHHHHH
Q 004593 590 VEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNK-VESKVRVLTDMRELASANSVDAFALIYTN 668 (743)
Q Consensus 590 ~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~-v~~~~~~l~~l~~ll~~~d~~~i~~~~~~ 668 (743)
-.....+=-..||..+|+.. |++.+..++.++.+... -...+..++.+.+=|-.+-.+. +..
T Consensus 74 ~~~~arrRQlQyIGKlmR~~-------------DvepI~~~Ldkl~~~~~q~~a~lHklE~~RdrLia~GD~A----lt~ 136 (187)
T COG3028 74 KSEIARRRQLQYIGKLMRDR-------------DVEPIRAALDKLRNRHNQQVALLHKLEQLRDRLIAEGDGA----LTE 136 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhC-------------ChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCchH----HHH
Confidence 33444445567888888643 77888888888876331 2356778888776554342233 346
Q ss_pred HhhhCCCCCHHHHHHHHH
Q 004593 669 VLEHQPDCPPEVVERLVA 686 (743)
Q Consensus 669 l~~~yPD~s~~~v~aiL~ 686 (743)
|+..|||+...++..|++
T Consensus 137 ~l~~~P~aDrq~LR~LvR 154 (187)
T COG3028 137 FLNQYPDADRQQLRTLIR 154 (187)
T ss_pred HHHHCCcccHHHHHHHHH
Confidence 778899998888877764
No 85
>PRK02224 chromosome segregation protein; Provisional
Probab=30.45 E-value=1.1e+03 Score=29.04 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004593 66 SLALSQNTINQLRENFISIE 85 (743)
Q Consensus 66 ~L~~a~~~v~~i~~~~~~i~ 85 (743)
.|...+..+.++...+....
T Consensus 207 ~l~~~~~~l~el~~~i~~~~ 226 (880)
T PRK02224 207 RLNGLESELAELDEEIERYE 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 86
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=30.45 E-value=30 Score=27.47 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=19.5
Q ss_pred HHhhhCCCCCHHHHHHHHHHhcCC
Q 004593 668 NVLEHQPDCPPEVVERLVALREAI 691 (743)
Q Consensus 668 ~l~~~yPD~s~~~v~aiL~~R~Dl 691 (743)
.|..++||.++..++.++..|+||
T Consensus 21 ~l~~k~P~at~~~l~~lve~RsdF 44 (68)
T PF09164_consen 21 RLRAKLPDATPTELKELVEKRSDF 44 (68)
T ss_dssp HHHHH-TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHhhH
Confidence 567789999999999999999875
No 87
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=29.63 E-value=5.9e+02 Score=25.54 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHh--hhcCChhHHHH
Q 004593 67 LALSQNTINQLRENFISIERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARD--SLGDDKELVNT 144 (743)
Q Consensus 67 L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~--~l~~~~nLL~a 144 (743)
|++--.++.++...+.++-+.|...- .-.+.++.|.++|..++..+.+-+. .+. ++.+ .++ ..|=.=
T Consensus 4 l~~~E~ele~l~~~ikkLiK~ck~~i------~a~k~~~~a~~~F~~~L~~f~~~~~-g~~--~tDDe~~i~--~~L~kF 72 (207)
T cd07602 4 LHEHEAELERTNKAIKELIKECKNLI------SATKNLSKAQRSFAQTLQNFKFECI-GET--QTDDEIEIA--ESLKEF 72 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhcc-CCc--CcccHHHHH--HHHHHH
Confidence 33444555566666655555555432 3456788999999888887774221 110 0000 011 112222
Q ss_pred HHHHHHHHhHHHHHHHHhh
Q 004593 145 YERLTALDGKRRFALAAAA 163 (743)
Q Consensus 145 h~~L~~Le~~rd~~l~~~~ 163 (743)
-..|.+++++|+.++.++.
T Consensus 73 ~~~l~ei~~~r~~L~~q~~ 91 (207)
T cd07602 73 GRLIETVEDERDRMLENAE 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2335588888888887665
No 88
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.42 E-value=5.4e+02 Score=25.01 Aligned_cols=13 Identities=0% Similarity=-0.123 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHhh
Q 004593 32 GDMKADYIARQQA 44 (743)
Q Consensus 32 ~~~~~~~~~k~~~ 44 (743)
.+...++.++...
T Consensus 87 ~~~l~~l~~el~~ 99 (191)
T PF04156_consen 87 QQQLQQLQEELDQ 99 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 89
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=29.27 E-value=5.4e+02 Score=25.03 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=2.6
Q ss_pred hcHHHHH
Q 004593 177 EDVDQTW 183 (743)
Q Consensus 177 ~~v~~l~ 183 (743)
+.|..+.
T Consensus 201 ~~L~~~v 207 (213)
T PF00015_consen 201 EELQELV 207 (213)
T ss_dssp CCCCHHC
T ss_pred HHHHHHH
Confidence 3333333
No 90
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.26 E-value=5.7e+02 Score=28.43 Aligned_cols=56 Identities=20% Similarity=0.384 Sum_probs=35.5
Q ss_pred HHHHhhcC--CCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 16 REVAKLLT--LPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFI 82 (743)
Q Consensus 16 ~~v~~ll~--~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~ 82 (743)
+-++++|+ ||+||+.-..+.+.+-++- +..++.+..-+..|.++.+.|+.+.+-+.
T Consensus 176 klL~rLLkSn~PeDLqaANkLIK~lVkee-----------e~k~eKiskR~~aleev~n~vk~l~em~l 233 (594)
T KOG1086|consen 176 KLLARLLKSNHPEDLQAANKLIKTLVKEE-----------EHKLEKISKRVKALEEVNNNVKLLEEMLL 233 (594)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677776 7899876554443333222 23566677777778888888877776543
No 91
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=29.04 E-value=3.4e+02 Score=31.73 Aligned_cols=82 Identities=13% Similarity=0.276 Sum_probs=47.2
Q ss_pred HHHHhhccccccCCchhhhhHHhhHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHH
Q 004593 546 QQLFLKLYSKEWSDGQVTEYILPTFSDYFADVKMFVEER--SFRRFVEACLEETIVLFIDHLLSQKNYIKEITIERMRED 623 (743)
Q Consensus 546 ~p~~~~lft~~W~~~~~v~~I~~Tl~dy~~d~~~~L~~~--~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D 623 (743)
+..+..+|+..+- ....+-...+.+.+.+++.|+... ..+..+.++.+.+.+..+ .++.....+.+...+++..-
T Consensus 111 e~~~~~~F~~~Y~--~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~l~~Ff~~Lf~~~f-~llnp~~~~~~dy~~Cl~~~ 187 (557)
T PF01153_consen 111 ENSLHSMFSRTYG--SLYPQNRPIFQDLFTDLRRYYLGSNVNLEEALNEFFDRLFPRVF-RLLNPQYQFSDDYLECLRKA 187 (557)
T ss_dssp HHHHHHHHHHHTT--HHHHCTHHHHHHHHHHHHHHHCCS-S-HHHHHHHHHHHHHHHHH-HHHTTTSB--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH-HHhccCcCCCchHHHHHHHH
Confidence 4556667766553 223333455566666666655544 466667777777666666 55544433567788888777
Q ss_pred HHHHHHH
Q 004593 624 EEAIIEA 630 (743)
Q Consensus 624 ~~~l~~~ 630 (743)
.+.++-|
T Consensus 188 ~~~l~PF 194 (557)
T PF01153_consen 188 MEDLKPF 194 (557)
T ss_dssp HHHH-TT
T ss_pred HHhhCCc
Confidence 7776665
No 92
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.90 E-value=1.2e+03 Score=28.96 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=15.6
Q ss_pred hhHHHHHHHHhhcHHHHHHHHHHHH
Q 004593 166 IDEVGRLREYFEDVDQTWETFEKTL 190 (743)
Q Consensus 166 ~~~~~~l~~~f~~v~~l~~~f~~~i 190 (743)
+++...+..+-..++.+...|....
T Consensus 781 ~ee~e~l~kLn~eI~~l~~kl~~~~ 805 (1200)
T KOG0964|consen 781 PEELERLSKLNKEINKLSVKLRALR 805 (1200)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5556667666667777666665433
No 93
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.99 E-value=8.3e+02 Score=26.75 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=17.8
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHh
Q 004593 128 AAEARDSLGDDKELVNTYERLTALDG 153 (743)
Q Consensus 128 ~~~~~~~l~~~~nLL~ah~~L~~Le~ 153 (743)
+++...-+.++..|..+...|..|+.
T Consensus 317 meerg~~mtD~sPlv~IKqAl~kLk~ 342 (359)
T PF10498_consen 317 MEERGSSMTDGSPLVKIKQALTKLKQ 342 (359)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 33333444566569999999998876
No 94
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.92 E-value=8.7e+02 Score=26.97 Aligned_cols=61 Identities=10% Similarity=0.116 Sum_probs=31.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhHHhhHHHH--HHHHHHHHHHHHHHHHhhh
Q 004593 61 QTGLESLAL-SQNTINQLRENFISIERYCQECQTLIENHNQIK--LLSNARNNLNTTLKDVEGM 121 (743)
Q Consensus 61 ~~gl~~L~~-a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik--~l~~~~~nl~~~i~~l~~l 121 (743)
..-++.|++ -+.+++-+.+.+.+-.-.++..++.+.++-++- ++...+++|..+.+.+...
T Consensus 232 ~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yq 295 (395)
T PF10267_consen 232 EESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQ 295 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333444443 444555555555555555555555555553332 4556666666655555543
No 95
>PHA03395 p10 fibrous body protein; Provisional
Probab=27.88 E-value=1.7e+02 Score=24.90 Aligned_cols=12 Identities=8% Similarity=0.401 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 004593 57 IEQAQTGLESLA 68 (743)
Q Consensus 57 l~~~~~gl~~L~ 68 (743)
+++.+..+..++
T Consensus 20 VdalQ~~V~~l~ 31 (87)
T PHA03395 20 VDALQAAVDDVR 31 (87)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 96
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.39 E-value=6.4e+02 Score=25.23 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcCC-----hhH
Q 004593 67 LALSQNTINQLRENFISIERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDD-----KEL 141 (743)
Q Consensus 67 L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~~-----~nL 141 (743)
|+.=-.+|.++...+.+|-+.|... | ..-|.++.|.+-|..++..+++-+. .+. ..|+ ..|
T Consensus 4 l~~hE~ele~~~~~IkkliK~~~~l---i---~a~K~~s~A~r~Fa~~L~df~f~~i-gd~-------~tdde~~I~~sL 69 (207)
T cd07633 4 LKCYEQELERTNKFIKDVIKDGNAL---I---SAIKEYSSAVQKFSQTLQSFQFDFI-GDT-------LTDDEINIAESF 69 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHhhcC-CCc-------ccchHHHHHHHH
Confidence 3334456666666666665555543 2 3345788999999888888776322 111 1111 112
Q ss_pred HHHHHHHHHHHhHHHHHHHHhh
Q 004593 142 VNTYERLTALDGKRRFALAAAA 163 (743)
Q Consensus 142 L~ah~~L~~Le~~rd~~l~~~~ 163 (743)
=.--..|.+++++|..++.+++
T Consensus 70 ~~F~~~L~~ie~~r~~l~d~aq 91 (207)
T cd07633 70 KEFAELLQEVEEERMMMVQNAS 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2233345688889988887765
No 97
>PF13864 Enkurin: Calmodulin-binding
Probab=26.68 E-value=3e+02 Score=23.82 Aligned_cols=72 Identities=10% Similarity=0.117 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHhHHhhHHHHH
Q 004593 30 FIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQN--TINQLRENFISIERYCQECQTLIENHNQIKL 103 (743)
Q Consensus 30 kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~--~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~ 103 (743)
+||.|..+..++.+.-.......++.+. ...|+..|.+..+ .++.++.+-.++..-.+..+-.++.++..+.
T Consensus 2 ~vP~YL~~~k~e~~~e~~~~~~~~~~~~--~~~~~~~l~eeER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~r 75 (98)
T PF13864_consen 2 KVPKYLKKRKKEIAEEEEEREREEEDQE--CPPGMRLLSEEERQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRR 75 (98)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhHh--CccccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHH
Confidence 4666776666666666666555555444 6677777777544 6777887777777777776666666654443
No 98
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=25.83 E-value=5.3e+02 Score=23.80 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004593 104 LSNARNNLNTTLKDVEGM 121 (743)
Q Consensus 104 l~~~~~nl~~~i~~l~~l 121 (743)
++..+.+|..++..++.|
T Consensus 96 L~~~~~lL~~~v~~ie~L 113 (131)
T PF10158_consen 96 LSRCQSLLNQTVPSIETL 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555544444443
No 99
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=24.74 E-value=7.2e+02 Score=24.93 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=42.2
Q ss_pred HHHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcCChhHHHHHHHHHHHHhHHHHHHHHhh
Q 004593 84 IERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDDKELVNTYERLTALDGKRRFALAAAA 163 (743)
Q Consensus 84 i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~~~nLL~ah~~L~~Le~~rd~~l~~~~ 163 (743)
|+++...+..++ .-.+.++.|.++|..++..+.+-+. .+. .+.+.+.=+..|..-..-|.+++++|..++.+++
T Consensus 18 ik~liK~c~~li---~A~k~~~~a~~~Fa~sL~~f~~~~i-gd~--~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~ 91 (207)
T cd07634 18 IKELIKDGSLLI---GALRNLSMAVQKFSQSLQDFQFECI-GDA--ETDDEISIAQSLKEFARLLIAVEEERRRLIQNAN 91 (207)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcc-CCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 3345789999999888877775222 110 0001000001366667777899999998887765
No 100
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.71 E-value=7.7e+02 Score=25.27 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=42.6
Q ss_pred CchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh-HHHHHH
Q 004593 26 DQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH-NQIKLL 104 (743)
Q Consensus 26 ~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~-~~Ik~l 104 (743)
.+++.+.+..+ +......+....+..--+..+.-...+....+.+..++......+.....-+.-+.++ ++|.++
T Consensus 21 ~~~~~~~~~~~----~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 21 ATLDQAQQVQQ----QWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred ccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555443332 3333333333333333444444444455555555555555555555555555555666 556666
Q ss_pred HHHHHHHHH
Q 004593 105 SNARNNLNT 113 (743)
Q Consensus 105 ~~~~~nl~~ 113 (743)
...++.+.-
T Consensus 97 ~~~~~~l~p 105 (251)
T PF11932_consen 97 EETRQELVP 105 (251)
T ss_pred HHHHHHHHH
Confidence 666666654
No 101
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.55 E-value=1.2e+03 Score=27.30 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHhHHhh
Q 004593 45 NDAQLSTMVAEQIEQAQTGLESLALSQNTIN--QLRENFISIERYCQECQTLIENH 98 (743)
Q Consensus 45 vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~--~i~~~~~~i~~~~~~~~~~v~~~ 98 (743)
+=..|++..-.|++..+.|...|....=.+. .+.+.+..+.....++...+..+
T Consensus 216 l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 216 LYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3345566666788888888777765433333 24444444444444444444333
No 102
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=24.50 E-value=2.2e+02 Score=30.34 Aligned_cols=116 Identities=11% Similarity=0.064 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhH----HHHHHHhhhcCChhHHHHHHHHHHH
Q 004593 76 QLRENFISIERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISV----EAAEARDSLGDDKELVNTYERLTAL 151 (743)
Q Consensus 76 ~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~----~~~~~~~~l~~~~nLL~ah~~L~~L 151 (743)
++-..--+|-..|.+.+....++..-+.+..+-.+++..|+..+....+|. .++..++.|..|. |.+|
T Consensus 13 ~~~~~aleiLa~~~ev~g~~~r~~~y~~Aasvlk~~p~~I~S~~ea~~lP~iG~kia~ki~EiletG~--------l~el 84 (353)
T KOG2534|consen 13 QIFTEALEILAEAYEVEGEEDRARAYRRAASVLKSLPFPITSGEEAEKLPGIGPKIAEKIQEILETGV--------LREL 84 (353)
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhCCCCcccHHHhcCCCCCCHHHHHHHHHHHHcCC--------chhH
Confidence 333333344444555555555666667778888888888888887777774 4445555555554 6677
Q ss_pred HhHHHHHHHHhhcChhHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCchhh
Q 004593 152 DGKRRFALAAAASHIDEVGRLREYFEDVDQTWETFEKTLWTHISNFYKLSKESPQTLV 209 (743)
Q Consensus 152 e~~rd~~l~~~~~~~~~~~~l~~~f~~v~~l~~~f~~~i~~~~~~~l~l~~~~p~~lv 209 (743)
+.+|.+ +....-.+|..+-++-..-.+.-..---++++-+|++|.-++
T Consensus 85 e~v~~d----------e~~~~lklFtnifGvG~ktA~~Wy~~GfrTled~Rk~~~kft 132 (353)
T KOG2534|consen 85 EAVRND----------ERSQSLKLFTNIFGVGLKTAEKWYREGFRTLEDVRKKPDKFT 132 (353)
T ss_pred HHHhcc----------hhHHHHHHHHHHhccCHHHHHHHHHhhhhHHHHHHhCHHHHH
Confidence 777752 112222355555544433333333333345555555554444
No 103
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=24.26 E-value=1.9e+03 Score=29.66 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHH--HH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 10 AKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDAQLSTMVA--EQ------IEQAQTGLESLALSQNTINQLRENF 81 (743)
Q Consensus 10 A~~~a~~~v~~ll~~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq--~q------l~~~~~gl~~L~~a~~~v~~i~~~~ 81 (743)
.|+.|+. +++++ .+||+++-+|+.+|-+-=|+=|+..-+ +| |-.|..++......-.+|-.-.+.+
T Consensus 398 eRe~ALr--~ELiR----QEKLEqLA~RFdrKAamREtwL~enqrlvsqdnfg~~LaaVEAa~KKheAIetDI~AyeeRv 471 (2473)
T KOG0517|consen 398 ERELALR--AELIR----QEKLEQLARRFDRKAAMRETWLKENQRLVSQDNFGYDLAAVEAALKKHEAIETDILAYEERV 471 (2473)
T ss_pred HHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4566664 67765 689999999999998888888887655 33 6678888888888888888888888
Q ss_pred HHHHHHHHHhHHhHHhhHHHHHHHHHHHHHHH
Q 004593 82 ISIERYCQECQTLIENHNQIKLLSNARNNLNT 113 (743)
Q Consensus 82 ~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~ 113 (743)
..+...|.+-.. +.|-+++++...+.|+..
T Consensus 472 qal~ava~eL~~--E~YHd~~rV~~r~~~V~~ 501 (2473)
T KOG0517|consen 472 QALVAVADELEA--ENYHDIKRVAARKDNVLR 501 (2473)
T ss_pred HHHHHHHHHHHH--hccchHHHHHHHHHHHHH
Confidence 888888887765 588888888887777744
No 104
>PRK10807 paraquat-inducible protein B; Provisional
Probab=23.83 E-value=8.9e+02 Score=28.21 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=3.4
Q ss_pred CCchhhHH
Q 004593 25 PDQLQFIG 32 (743)
Q Consensus 25 p~~L~kl~ 32 (743)
|..|+.|.
T Consensus 412 ps~l~~l~ 419 (547)
T PRK10807 412 SGGLAQIQ 419 (547)
T ss_pred CCCHHHHH
Confidence 44444443
No 105
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=23.57 E-value=9.4e+02 Score=26.44 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhh
Q 004593 74 INQLRENFISIERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSL 135 (743)
Q Consensus 74 v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l 135 (743)
+..+...+.++.....++ +...+-...+.++.-+.++...++.++.+.......+.+.+++
T Consensus 25 l~~~~~~~~~l~~~l~~p-~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell 85 (367)
T PRK00578 25 VDALKERLEELEAEAEDP-DFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELA 85 (367)
T ss_pred HHHHHHHHHHHHHHhcCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555443 2334445555666666677666666666655544444444444
No 106
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=22.68 E-value=1.3e+02 Score=25.66 Aligned_cols=49 Identities=16% Similarity=0.482 Sum_probs=36.5
Q ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHchhHHhHHh
Q 004593 322 VAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDN 376 (743)
Q Consensus 322 ~~~cfPp~~~I~~~y~~~YH~~l~~~L~~l~~~~~~l~~~~ll~ll~Wv~~Y~~~ 376 (743)
+.+--|.+|++|+....--+.++...+.. -.....+..+++|+..|.+.
T Consensus 4 ~~~~~~S~~~v~~~~t~~a~~al~~~~~~------~~~~~~l~~ll~~l~sY~~l 52 (90)
T PF11571_consen 4 VDPWSPSRYKVFRKITEHANTALLHFINS------RPPEWDLRSLLDWLSSYRNL 52 (90)
T ss_pred cccccchhhhhhhhhhHHHHHHHHHhhhc------CCCccHHHHHHHHHHHHhhh
Confidence 44566888999999988888876555432 34456799999999889774
No 107
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.66 E-value=9.2e+02 Score=25.41 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=41.1
Q ss_pred chh-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004593 27 QLQ-FIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLES----LALSQNTINQLRENFISIERYCQECQT 93 (743)
Q Consensus 27 ~L~-kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~----L~~a~~~v~~i~~~~~~i~~~~~~~~~ 93 (743)
+|. .|..+|..+..........+...-+.+++..+.+... +..++..+..++..+...........+
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~ 237 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRA 237 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhcccc
Confidence 466 4788888887777777777777777777776655544 555555555555555444444333333
No 108
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=22.46 E-value=1.2e+03 Score=26.93 Aligned_cols=98 Identities=9% Similarity=0.137 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004593 13 AAVREVAKLLTLPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQ 92 (743)
Q Consensus 13 ~a~~~v~~ll~~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~ 92 (743)
+.+++|.+.+....+.+.++..-.++.++.++.=+..+..+.+--.....-.....+++..|.....-+
T Consensus 16 ~~l~~v~Di~eq~~kf~~l~~h~~~~~~e~~~~ln~~~n~~~~i~~~~~e~~~l~e~~r~~V~~~~~~f----------- 84 (742)
T COG5173 16 SDLQTVLDIIEQSTKFEALEHHDGNLSAEISKCLNNILNISKRIYGLEEELKSLVEGKRRNVRVLKGFF----------- 84 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----------
Confidence 457888888887777778888888999999884343333333322233333445555666666655433
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004593 93 TLIENHNQIKLLSNARNNLNTTLKDVEGM 121 (743)
Q Consensus 93 ~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l 121 (743)
.+++.|+.++--..+|.|+...++-.++|
T Consensus 85 r~~k~Y~sv~~t~~~~s~l~n~V~~~d~i 113 (742)
T COG5173 85 RLVKDYRSVKMTCLAHSNLCNVVEFSDRI 113 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455566666666666666555444444
No 109
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.30 E-value=5.2e+02 Score=22.42 Aligned_cols=66 Identities=9% Similarity=0.180 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHhHHhh-HHHHHHHHHHHHHHH
Q 004593 48 QLSTMVAEQIEQAQTGLESLALS----QNTINQLRENFISIERYCQECQTLIENH-NQIKLLSNARNNLNT 113 (743)
Q Consensus 48 ~Lk~~vq~ql~~~~~gl~~L~~a----~~~v~~i~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~ 113 (743)
.....|+++++++..=++.|..- .....++.+....+...+.+-......+ +.+++++.+-..++.
T Consensus 7 ~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~ 77 (99)
T PF10046_consen 7 KVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTE 77 (99)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888877643 3334455555555555555554444444 444455554444443
No 110
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.98 E-value=1.2e+03 Score=29.28 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=58.5
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh-HHHH
Q 004593 25 PDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLE-SLALSQNTINQLRENFISIERYCQECQTLIENH-NQIK 102 (743)
Q Consensus 25 p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~-~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~-~~Ik 102 (743)
.+.++.|-..|.|+..+...+.. +..--+++++-..|++ -|..++.++.+++..+..-+.-.+..++.+.++ +.|.
T Consensus 651 ek~~~~L~~~k~rl~eel~ei~~--~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~ 728 (1141)
T KOG0018|consen 651 EKEVDQLKEKKERLLEELKEIQK--RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS 728 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 34456677777888888887777 3333334444444443 355566777777766666666666677777777 7777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004593 103 LLSNARNNLNTTLKDVE 119 (743)
Q Consensus 103 ~l~~~~~nl~~~i~~l~ 119 (743)
.+-.--+|...++..|+
T Consensus 729 ~i~r~l~~~e~~~~~L~ 745 (1141)
T KOG0018|consen 729 EIKRKLQNREGEMKELE 745 (1141)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666555544
No 111
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=21.97 E-value=1.1e+03 Score=26.41 Aligned_cols=56 Identities=11% Similarity=0.242 Sum_probs=37.3
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 004593 25 PDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQ--NTINQLRENF 81 (743)
Q Consensus 25 p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~--~~v~~i~~~~ 81 (743)
|..++++..+..++ .+..++..+|.+.+..+...++.-+-..++|+ .++..++...
T Consensus 303 P~~~~el~~~l~~V-~~~~~vr~~ltaemAd~~~~ik~llvrAEDaRl~~d~~~m~k~y 360 (431)
T PF14782_consen 303 PDEMEELREILEKV-DELNEVRQRLTAEMADHSNLIKSLLVRAEDARLMGDMKNMRKYY 360 (431)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHhhhHHHHHHHH
Confidence 45555565555554 35677888888888888888888877777775 4444444443
No 112
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=2.9e+02 Score=31.17 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=60.4
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-h
Q 004593 20 KLLTLPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQ-------E-C 91 (743)
Q Consensus 20 ~ll~~p~~L~kl~~~~~~~~~k~~~vd~~Lk~~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~-------~-~ 91 (743)
+.++++-.|+.+=+---.+.+++..+|+-+-+-|=+-.+.--.|-+.+..-++++.++.++|........ . +
T Consensus 40 dkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms~i~~~s~~l~ 119 (636)
T KOG2346|consen 40 DKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMSSIQSKSDGLA 119 (636)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHHHHhhhhcccc
Confidence 4456666677666666667778888888887777666665555555555555554444444332222222 1 1
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHH
Q 004593 92 QTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAA 129 (743)
Q Consensus 92 ~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~ 129 (743)
..+.++-+.|+++...+.-+ ..|++++.+|..+.
T Consensus 120 g~L~ekre~I~kLg~~~~ll----rkvqfifdLP~rLr 153 (636)
T KOG2346|consen 120 GSLFEKRELIKKLGQRPPLL----RKVQFIFDLPRRLR 153 (636)
T ss_pred chhHHhHHHHHHhcCCccch----hhhHHHhhhHHHHH
Confidence 12223345566665555443 45778888887654
No 113
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=21.57 E-value=6.4e+02 Score=24.50 Aligned_cols=30 Identities=0% Similarity=0.088 Sum_probs=20.9
Q ss_pred cCCCCchhhHHHHHHHHHHHHhhHHHHHHH
Q 004593 22 LTLPDQLQFIGDMKADYIARQQANDAQLST 51 (743)
Q Consensus 22 l~~p~~L~kl~~~~~~~~~k~~~vd~~Lk~ 51 (743)
||+-+|+.++..+--.+..|...++.++-.
T Consensus 68 lPSr~DiarvA~lvinlE~kvD~lee~fdd 97 (189)
T TIGR02132 68 VPTKEDIANVASLVINLEEKVDLIEEFFDD 97 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677778887777777777777665543
No 114
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.31 E-value=7.9e+02 Score=26.32 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHH
Q 004593 28 LQFIGDMKADYIARQQANDAQLST 51 (743)
Q Consensus 28 L~kl~~~~~~~~~k~~~vd~~Lk~ 51 (743)
++.++.+.-.+..+...+..++..
T Consensus 167 ~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 167 LELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554443
No 115
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.21 E-value=7.2e+02 Score=24.09 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=5.7
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 004593 36 ADYIARQQANDAQLSTMVAE 55 (743)
Q Consensus 36 ~~~~~k~~~vd~~Lk~~vq~ 55 (743)
.++.++.+.+-++|...|..
T Consensus 101 ~QVqqeL~~tf~rL~~~Vd~ 120 (171)
T PF04799_consen 101 HQVQQELSSTFARLCQQVDQ 120 (171)
T ss_dssp ---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 116
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=21.07 E-value=37 Score=20.00 Aligned_cols=9 Identities=44% Similarity=1.316 Sum_probs=6.6
Q ss_pred cccccCCcc
Q 004593 321 YVAPCFPPR 329 (743)
Q Consensus 321 ~~~~cfPp~ 329 (743)
.+.|||||-
T Consensus 5 dlrpcyppc 13 (22)
T PF08121_consen 5 DLRPCYPPC 13 (22)
T ss_pred ccccCCCCc
Confidence 457899984
No 117
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=20.84 E-value=4e+02 Score=20.49 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 004593 70 SQNTINQLRENFISIERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVEG 120 (743)
Q Consensus 70 a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~ 120 (743)
-...|.++++-+.+|.....+-..+++++. ..+..+..++..+...|+.
T Consensus 9 l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~--~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 9 LEQSIQELKQMFQDIGEEVEEQNEMLDRIE--DNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHhhHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 334455555556666666666666666663 2345555555555444443
No 118
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.79 E-value=7e+02 Score=23.32 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=16.6
Q ss_pred HHhHHhHHhhHHHH-HHHHHHHHHHHHHHHHhhh
Q 004593 89 QECQTLIENHNQIK-LLSNARNNLNTTLKDVEGM 121 (743)
Q Consensus 89 ~~~~~~v~~~~~Ik-~l~~~~~nl~~~i~~l~~l 121 (743)
..++++-.+++.+- ++..+..+|..|.+.|...
T Consensus 73 ~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 73 SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333434444333 3666666666665555543
No 119
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.45 E-value=1.2e+03 Score=25.94 Aligned_cols=20 Identities=5% Similarity=0.119 Sum_probs=11.0
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 004593 35 KADYIARQQANDAQLSTMVA 54 (743)
Q Consensus 35 ~~~~~~k~~~vd~~Lk~~vq 54 (743)
...+..+...++++|....+
T Consensus 256 i~~l~~~l~~le~~l~~l~~ 275 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQ 275 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666655433
No 120
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=20.43 E-value=6.9e+02 Score=23.86 Aligned_cols=74 Identities=11% Similarity=0.167 Sum_probs=46.0
Q ss_pred HHHHHHHhcccc---hhhhh----------hhhhhHHHHHHhhccCChhhHHHHHHHHhhhC-CC----CCHHHHHHHHH
Q 004593 625 EAIIEAFREYVS---VNKVE----------SKVRVLTDMRELASANSVDAFALIYTNVLEHQ-PD----CPPEVVERLVA 686 (743)
Q Consensus 625 ~~l~~~F~~~~s---~~~v~----------~~~~~l~~l~~ll~~~d~~~i~~~~~~l~~~y-PD----~s~~~v~aiL~ 686 (743)
+.|+++|..++. .++++ ...--|..+.+-|+..||+...+ +-.+.| |+ |..+++.-+|.
T Consensus 52 eDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~---~AF~~FD~~~~G~I~~d~lre~Lt 128 (171)
T KOG0031|consen 52 EDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVIL---NAFKTFDDEGSGKIDEDYLRELLT 128 (171)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHH---HHHHhcCccCCCccCHHHHHHHHH
Confidence 456666666654 22222 12345667888888778866554 222334 44 77899999999
Q ss_pred HhcC-CChHhHHHHHH
Q 004593 687 LREA-IPRKDAKEIVQ 701 (743)
Q Consensus 687 ~R~D-l~r~~~~~il~ 701 (743)
-+|| ++.+++.++..
T Consensus 129 t~gDr~~~eEV~~m~r 144 (171)
T KOG0031|consen 129 TMGDRFTDEEVDEMYR 144 (171)
T ss_pred HhcccCCHHHHHHHHH
Confidence 9997 66666554443
No 121
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.28 E-value=8.1e+02 Score=23.85 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred chhhhHHHHHHH------HHHHHhhcCCCCchh--hHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 004593 3 SEDLGVEAKEAA------VREVAKLLTLPDQLQ--FIGDMKADYIARQQANDAQLSTMVA--EQIEQAQTGLESLALSQN 72 (743)
Q Consensus 3 ~~~~~~~A~~~a------~~~v~~ll~~p~~L~--kl~~~~~~~~~k~~~vd~~Lk~~vq--~ql~~~~~gl~~L~~a~~ 72 (743)
+-.+|.+|++-| +.-+.+++..-.+|. .|.-||+-+.+--..+|+.+|..-+ ...+++..+|.-.+.--.
T Consensus 127 L~DlE~~~~el~~~vD~llr~lgg~lh~is~lt~~~vq~yr~aV~kl~d~~DanIK~~Y~lLAk~EEi~ksm~pv~~La~ 206 (222)
T KOG4514|consen 127 LSDLELEAQELASSVDNLLRNLGGLLHSISSLTADNVQVYRNAVNKLTDTLDANIKCQYQLLAKAEEITKSMKPVEQLAQ 206 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 004593 73 TINQLRENFISIERYC 88 (743)
Q Consensus 73 ~v~~i~~~~~~i~~~~ 88 (743)
.|++|+.-+.-.+.+|
T Consensus 207 qir~irRlve~lesl~ 222 (222)
T KOG4514|consen 207 QIRQIRRLVEMLESLM 222 (222)
T ss_pred HHHHHHHHHHHHHhhC
No 122
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=20.17 E-value=1.1e+02 Score=21.91 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=21.7
Q ss_pred HHHhhhCCCCCHHHHHHHHH-HhcCCCh
Q 004593 667 TNVLEHQPDCPPEVVERLVA-LREAIPR 693 (743)
Q Consensus 667 ~~l~~~yPD~s~~~v~aiL~-~R~Dl~r 693 (743)
..|.+.||.-....++.||. |+||+-+
T Consensus 6 diL~rvFP~~kr~~Le~iL~~C~GDvv~ 33 (39)
T PF03474_consen 6 DILTRVFPHQKRSVLELILQRCNGDVVQ 33 (39)
T ss_pred HHHHHHCCCCChHHHHHHHHHcCCcHHH
Confidence 45677899999999999998 7888633
No 123
>PHA03386 P10 fibrous body protein; Provisional
Probab=20.15 E-value=2.4e+02 Score=24.23 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004593 52 MVAEQIEQAQTGLESLALSQNTINQLRENFISIE 85 (743)
Q Consensus 52 ~vq~ql~~~~~gl~~L~~a~~~v~~i~~~~~~i~ 85 (743)
++|+|+++++...+.|..--..+..+...+.+|.
T Consensus 23 aLQ~qV~dv~~n~~~LDa~~~qL~~l~tkV~~Iq 56 (94)
T PHA03386 23 ALQTQLNGLEEDSQPLDGLPAQLTELDTKVSDIQ 56 (94)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 3455555555444444433333344444444333
No 124
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.09 E-value=8.7e+02 Score=24.18 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHhhhhcHhHHHHHHHhhhcCChhHHHHHH
Q 004593 67 LALSQNTINQLRENFISIERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDDKELVNTYE 146 (743)
Q Consensus 67 L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~i~~l~~l~~~~~~~~~~~~~l~~~~nLL~ah~ 146 (743)
|++--.++.+|...+.++-+.|+..-. .-+.+..|.++|...+..+.+...-.+ +.. +-|=.=-.
T Consensus 4 i~~~E~d~~~Le~~l~Kl~K~~~~~~d------ag~~~~~a~~~F~~~l~d~~~~~~~De--------~i~-~~l~kF~~ 68 (200)
T cd07638 4 LEDVEGDVAELELKLDKLVKLCIGMID------AGKAFCQANKQFMNGIRDLAQYSSKDA--------VIE-TSLTKFSD 68 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHhCCcch--------hhH-HHHHHHHH
Confidence 445556677777777776666665433 345566777888776666654222111 111 10212223
Q ss_pred HHHHHHhHHHHHHHHhh
Q 004593 147 RLTALDGKRRFALAAAA 163 (743)
Q Consensus 147 ~L~~Le~~rd~~l~~~~ 163 (743)
.|.+++++|..++.++.
T Consensus 69 ~l~ei~~~~~~L~~q~~ 85 (200)
T cd07638 69 TLQEMINYHTILFDQAQ 85 (200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35577777777666554
Done!