Query 004593
Match_columns 743
No_of_seqs 165 out of 403
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 18:52:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004593.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1891-1895//hhsearch_pdb/004593hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fji_1 Exocyst complex compone 1.0 1 1 454.7 31.7 341 388-733 1-399 (399)
2 3hr0_A COG4; conserved oligome 1.0 1 1 90.9 14.8 165 530-699 84-261 (263)
3 3ns4_A Vacuolar protein sortin 1.0 1 1 70.7 15.7 121 582-706 20-178 (271)
4 3swh_A MUNC13-1, protein UNC-1 1.0 1 1 65.7 20.2 268 394-662 9-332 (341)
5 3fhn_A Protein transport prote 1.0 1 1 28.9 37.3 614 19-701 3-698 (706)
6 2f6h_X Myosin-2, type V myosin 1.0 1 1 22.6 15.3 142 562-706 203-351 (419)
7 3mmi_A Myosin-4; globular tail 1.0 1 1 22.2 17.4 145 562-710 187-335 (386)
8 3vkg_A Dynein heavy chain, cyt 1.0 1 1 18.4 28.2 193 24-228 1893-2092(3245)
9 1quu_A Human skeletal muscle a 1.0 1 1 17.2 9.8 11 176-186 135-145 (250)
10 1otr_A Protein CUE2; protein-p 1.0 1 1 17.1 3.4 35 660-694 2-37 (49)
No 1
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=454.71 Aligned_cols=341 Identities=20% Similarity=0.337 Sum_probs=303.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 24677785367999999999999999999998520------049999999996236613489998999999876206136
Q 004593 388 QVCSESGAMDPLMNAYVERMQATTKKWYLNILDAD------KVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDV 461 (743)
Q Consensus 388 ~~ll~~~~~~~L~~~Yi~~~~~~l~ew~~~~l~~e------r~~~Pe~d~dG~~~t~~~vdifqmi~qql~~a~~~~~~~ 461 (743)
+|+|+++.++.|+++|++.++++|++|+.|+++.| |+.+|+.|.+|+|+|++|+|+|+||++|+++|..++.+.
T Consensus 1 ~~ll~~~~~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~~~~ 80 (399)
T 2fji_1 1 GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAK 80 (399)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99886545999999999999999999999999999999884689998699988528864799999999999998479730
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-----------------------CCCCCCCCHHHHEECCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998519-----------------------7988881000110246275199999997771
Q 004593 462 MLYRISLAIIQVMIDFQAAERQRLAE-----------------------PASEIGLEPLCAIINNNLRCYDLAMELSTST 518 (743)
Q Consensus 462 ~~~~v~~~~~~~l~~f~~~y~~~l~~-----------------------~~~~~~~~~liA~~N~~~~c~e~~~~l~~~~ 518 (743)
+..+|+..|..+|..|+..|++.+.+ ..++++++|+||++|||..|.+++.++..++
T Consensus 81 l~~~v~~~~~~~L~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~liA~~Nn~~~~~e~~~~l~~~~ 160 (399)
T 2fji_1 81 ILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKY 160 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCCTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 09999999999999999999999999999875201000124222476545654187865665544888999999999999
Q ss_pred HCCCCCCHHH-----------------HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1049932577-----------------98999999998189223798740045365771014568863999999999986
Q 004593 519 IESLPPNYAE-----------------QEALFHLISVIFDDPEVQQLFLKLYSKEWSDGQVTEYILPTFSDYFADVKMFV 581 (743)
Q Consensus 519 ~~~v~~~~~~-----------------~~~~~~l~~~if~D~~l~p~~~~lft~~W~~~~~v~~I~~Ti~dy~~d~~~~L 581 (743)
.+.+++.|.+ ..|+..|++.||.| ++|+|+.+||++||+++.|++||.|++||++||+.||
T Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~d--l~p~~~~lft~~W~~~~~v~~i~~ti~dy~~d~~~~L 238 (399)
T 2fji_1 161 GKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDD--LRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQM 238 (399)
T ss_dssp HTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT--THHHHTTTTSGGGTTCCHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98626778888899999999999999999999999999998--8999998577030087679999999999999999980
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHHHCCCCHHH-----HHHHHHHHHHHHHH
Q ss_conf 33489999999999999999999960787685---68899999999999999851244111-----21345538999985
Q 004593 582 EERSFRRFVEACLEETIVLFIDHLLSQKNYIK---EITIERMREDEEAIIEAFREYVSVNK-----VESKVRVLTDMREL 653 (743)
Q Consensus 582 ~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~---~~~a~~i~~D~~~l~~~F~~~~s~~~-----v~~~~~~l~~l~~l 653 (743)
+|++|+.|+++++++++.+|++++++ +..++ +.++++|.+|++.++.||.++++... +.+.+.+++.|++
T Consensus 239 ~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~- 316 (399)
T 2fji_1 239 NSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD- 316 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-
T ss_conf 86999999999999999999999846-7777840599999999999999999998556532025778779999999997-
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCC
Q ss_conf 5149844589999997631999999999999997169994769999999999998100----489998887553332112
Q 004593 654 ASANSVDAFALIYTNVLEHQPDCPPEVVERLVALREAIPRKDAKEIVQECKEIYENSL----INGNPPKPGFVFPRVKCL 729 (743)
Q Consensus 654 l~~~d~~~i~~e~~~l~~~~pD~s~~~v~aiL~~R~Dl~r~~~~~il~~~~~~~~~~~----~~~~~~~~~~ifs~i~~~ 729 (743)
|++++.+++.++|++++..||||+++||++||.+|+|++|++++++++.++++.+.+. ..+. ++|.||||++.+.
T Consensus 317 L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~R~D~~~~~~k~ll~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~ 395 (399)
T 2fji_1 317 LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGV-DREPTLMRRFVLE 395 (399)
T ss_dssp HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCGGGGCCCC
T ss_pred HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHH
T ss_conf 368957779999999998689999999999998254899899999999999998767777524666-7898614340010
Q ss_pred CCCC
Q ss_conf 2456
Q 004593 730 SASK 733 (743)
Q Consensus 730 ~~~~ 733 (743)
++-|
T Consensus 396 ~~~~ 399 (399)
T 2fji_1 396 FEKQ 399 (399)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 1369
No 2
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=90.92 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999998189223798740045365771----------01-456886399999999998633489999999999999
Q 004593 530 EALFHLISVIFDDPEVQQLFLKLYSKEWSDG----------QV-TEYILPTFSDYFADVKMFVEERSFRRFVEACLEETI 598 (743)
Q Consensus 530 ~~~~~l~~~if~D~~l~p~~~~lft~~W~~~----------~~-v~~I~~Ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v 598 (743)
.++..+...++. |.++|.+..+++...+-+ ++ +...+...+..+..|+.+|+|..|+.|+..+...+.
T Consensus 84 ~gi~~Lf~~~ik-prLr~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la 162 (263)
T 3hr0_A 84 EGLTELNSTAIK-PQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVA 162 (263)
T ss_dssp HHHHHHHHHHTH-HHHHHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999999769-8899999987253356777677551016689999999999999999987185799999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HH-HCCCC
Q ss_conf 99999996078768568899999999999999851244111213455389999855149844589999997-63-19999
Q 004593 599 VLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMRELASANSVDAFALIYTNV-LE-HQPDC 676 (743)
Q Consensus 599 ~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~~~d~~~i~~e~~~l-~~-~~pD~ 676 (743)
...-+.+++++ ++.-||-++.+|+..+.++|...++.. +...|..+..|+-|+++++++.+. ++++- .. .-|.+
T Consensus 163 ~~lE~~i~~~~--fn~lGal~LdrDvr~li~~~~~~~~~~-lRekF~RL~QI~~lLnle~~eev~-d~~~~~~~~~~W~L 238 (263)
T 3hr0_A 163 VELEKVVLKST--FNRLGGLQFDKELRSLIAYLTTVTTWT-IRDKFARLSQMATILNLERVTEIL-DYWGPNSGPLTWRL 238 (263)
T ss_dssp HHHHHHHTTCC--BCHHHHHHHHHHHHHHHHHHHTTSCTT-HHHHTHHHHHHHHHHTCSSGGGGG-GTSGGGGTTCCCCS
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHCCCCHHHHH-HHHCCCCCCCCCCC
T ss_conf 99999998277--070558999999999999997046611-668999999999998479768999-87334678853347
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999999997169994769999
Q 004593 677 PPEVVERLVALREAIPRKDAKEI 699 (743)
Q Consensus 677 s~~~v~aiL~~R~Dl~r~~~~~i 699 (743)
|++.+..++.+|-|++.++++.+
T Consensus 239 s~~E~r~il~lRvDf~~e~I~~l 261 (263)
T 3hr0_A 239 TPAEVRQVLALRIDFRSEDIKRL 261 (263)
T ss_dssp CHHHHHHHHTTBTTSCHHHHHHC
T ss_pred CHHHHHHHHHHHCCCCHHHHHHC
T ss_conf 99999999985636989899764
No 3
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=70.74 Aligned_cols=121 Identities=14% Similarity=0.138 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCCCCC--C------------CHH-HHHHHHHHHHHHHHHHHCCCCHH-------
Q ss_conf 334899999999999999999999-607876--8------------568-89999999999999985124411-------
Q 004593 582 EERSFRRFVEACLEETIVLFIDHL-LSQKNY--I------------KEI-TIERMREDEEAIIEAFREYVSVN------- 638 (743)
Q Consensus 582 ~~~~~~~l~~~l~~~~v~~Yi~~l-~k~~~~--~------------~~~-~a~~i~~D~~~l~~~F~~~~s~~------- 638 (743)
++.|+..||+.+.+.++..|++++ .+|++. + +.. +|+||..|++.|+++|..+++..
T Consensus 20 R~~Y~rnFcDK~ve~~~~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK~~Ll~LP~~~~~~~~~~ 99 (271)
T 3ns4_A 20 RDVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESVSNDSDLR 99 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 89999999999999999999999998814276434444333456544001488999879999999997644554345568
Q ss_pred ----------HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHCCC--CHHHHHHHHHHH
Q ss_conf ----------12134553899998551--49844589999997631999-9999999999971699--947699999999
Q 004593 639 ----------KVESKVRVLTDMRELAS--ANSVDAFALIYTNVLEHQPD-CPPEVVERLVALREAI--PRKDAKEIVQEC 703 (743)
Q Consensus 639 ----------~v~~~~~~l~~l~~ll~--~~d~~~i~~e~~~l~~~~pD-~s~~~v~aiL~~R~Dl--~r~~~~~il~~~ 703 (743)
.|...+..+++|++++. .++++.++..|..+ .|| .+....+.||+++| + +.++.+.+.+.+
T Consensus 100 ~~ts~~sytK~V~~~~~kle~lLKvLm~P~dppe~~ve~Y~~L---i~dn~s~~nF~KIL~LKG-v~wdl~~wk~~~~~f 175 (271)
T 3ns4_A 100 ENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKL---TNNNPDSAVWSFVLALKG-IPWDLALWKKMWSAY 175 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHH---TTSCCCHHHHHHHHHHHT-CCSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHHHH
T ss_conf 9864201122986569999999999838899879999999998---189887899999999658-876599999999998
Q ss_pred HHH
Q ss_conf 999
Q 004593 704 KEI 706 (743)
Q Consensus 704 ~~~ 706 (743)
+.-
T Consensus 176 ~l~ 178 (271)
T 3ns4_A 176 NLE 178 (271)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 522
No 4
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=65.66 Aligned_cols=268 Identities=11% Similarity=0.146 Sum_probs=161.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHH
Q ss_conf 853679999999999999999999985200499999999962366134899989999998762--061369999999999
Q 004593 394 GAMDPLMNAYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRD--NSTDVMLYRISLAII 471 (743)
Q Consensus 394 ~~~~~L~~~Yi~~~~~~l~ew~~~~l~~er~~~Pe~d~dG~~~t~~~vdifqmi~qql~~a~~--~~~~~~~~~v~~~~~ 471 (743)
.-+.+.+..++.....+..+|+.++++.|+..+-+...++..||++.+|+|.+++|.++.... .......+.......
T Consensus 9 ~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t~l~ 88 (341)
T 3swh_A 9 AWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFA 88 (341)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 88999999999998999999999998621358755355676565559999999999999999779998899999999999
Q ss_pred HHHHHHHHHHHHHHCC----CCCCCCCCHHHHEECCCHHHHHHHHHHHHHHH-CCCCCCHHHH---------HHHHHHHH
Q ss_conf 9999999999998519----79888810001102462751999999977711-0499325779---------89999999
Q 004593 472 QVMIDFQAAERQRLAE----PASEIGLEPLCAIINNNLRCYDLAMELSTSTI-ESLPPNYAEQ---------EALFHLIS 537 (743)
Q Consensus 472 ~~l~~f~~~y~~~l~~----~~~~~~~~~liA~~N~~~~c~e~~~~l~~~~~-~~v~~~~~~~---------~~~~~l~~ 537 (743)
+.+.+....|.+.+.. .....+...+|.++||........+.+.+... +.+.+..... ..+..+..
T Consensus 89 ~~i~~~~~~Y~~~l~~~~~~~~~~e~~~~~Cv~lNNie~lR~~L~~l~~~l~~~~l~~~~~~~~~~lq~~l~~vl~~l~~ 168 (341)
T 3swh_A 89 KTISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSH 168 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999876523321246456416199999999998886164357899999999999999999999999
Q ss_pred HHHCC---HHHHHHHHHCC-------------CCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98189---22379874004-------------5365771-----014568863999999999986334899999999999
Q 004593 538 VIFDD---PEVQQLFLKLY-------------SKEWSDG-----QVTEYILPTFSDYFADVKMFVEERSFRRFVEACLEE 596 (743)
Q Consensus 538 ~if~D---~~l~p~~~~lf-------------t~~W~~~-----~~v~~I~~Ti~dy~~d~~~~L~~~~~~~l~~~l~~~ 596 (743)
.|.. +.+..+...+. ...|-.. +.+..+..-+++.+.-+...|.+..|..++..+-..
T Consensus 169 -~~~~~~~~~i~~~v~~m~~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~ 247 (341)
T 3swh_A 169 -VFATSFQPHIEECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKL 247 (341)
T ss_dssp -HHHHHTHHHHHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999988889999999999997610556678432354334678899999999999999999998788899999999999
Q ss_pred HHHHHHHHH------------HCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHH---HHH--HHHHHHHHHHHHHCCC
Q ss_conf 999999999------------6078--76856889999999999999985124411---121--3455389999855149
Q 004593 597 TIVLFIDHL------------LSQK--NYIKEITIERMREDEEAIIEAFREYVSVN---KVE--SKVRVLTDMRELASAN 657 (743)
Q Consensus 597 ~v~~Yi~~l------------~k~~--~~~~~~~a~~i~~D~~~l~~~F~~~~s~~---~v~--~~~~~l~~l~~ll~~~ 657 (743)
++......+ +.+. ...+......+..+.+.|++||-.-+.+- .++ ..+..+..+..+-+.+
T Consensus 248 ~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL~~~~Leks~~~~~l~~~L~L~~~~ 327 (341)
T 3swh_A 248 VMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQA 327 (341)
T ss_dssp HHHHHHHHTTSCGGGCSSSCC----------CTTHHHHHHHHHHHHHHHHGGGTSCCHHHHHTCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999736622456676640455679999999999999999999864599999978870476699999999886499
Q ss_pred CHHHH
Q ss_conf 84458
Q 004593 658 SVDAF 662 (743)
Q Consensus 658 d~~~i 662 (743)
..+.|
T Consensus 328 T~~LI 332 (341)
T 3swh_A 328 TDLLI 332 (341)
T ss_dssp -----
T ss_pred HHHHH
T ss_conf 89999
No 5
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=28.86 Aligned_cols=614 Identities=7% Similarity=0.067 Sum_probs=261.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96329999342299999999999853999997899999999999999999999999999998999999989849967702
Q 004593 19 AKLLTLPDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENH 98 (743)
Q Consensus 19 ~~ll~~p~~L~ki~~~~~~~~~k~~~id~~Lk~~vq~qle~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~ 98 (743)
.+-+..-+||-.|++..+.+.+++..+-.+|++.-+++ +....-..++..+.++|-.--.++..| +.+..+|
T Consensus 3 ~~~~~~i~dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~-------~~l~~~y 74 (706)
T 3fhn_A 3 MGSMNGIDDLLNINDRIKQVQNERNELASKLQNLKQSL-ASNDTEVALSEVIAQDIIEVGASVEGL-------EQLRAKY 74 (706)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCTTCCCCHHHHHHHHHSCSSHHHH-------HHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHCCCCHHHH-------HHHHHHC
T ss_conf 77500067888679999999999999999999975232-345257899999999998631448999-------9999981
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCH------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 88999999999999999988635517689999971202871------479999999999937999999960182578999
Q 004593 99 NQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLGDDK------ELVNTYERLTALDGKRRFALAAAASHIDEVGRL 172 (743)
Q Consensus 99 ~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~e~~------nLL~ah~~L~~Le~~rd~~l~~~~~~~~~~~~l 172 (743)
.++.-+.....++..-.+.-+.+..+..--.+..+...+.+ .|-..|..+..+..- .....+-.+.+
T Consensus 75 g~l~il~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~ 147 (706)
T 3fhn_A 75 GDLQILNKLEKVAVQQTQMQAGVDKLDSFERQLDELAEQPPDQFTLDDVKALHSKLTSVFAT-------VPQINNIDSQY 147 (706)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHTT-------SCCCCCTTSTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-------CCCCCCHHHHH
T ss_conf 88099999999999999999899999999999987630452003599999999999987630-------02343134555
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHH--------HHHHHHCC-CCHHHHHHHHH-HHHHHHH-H-HHHHHHHHHHCCCCCCC
Q ss_conf 998311789999999999999978--------99975218-81156799999-8424721-8-98999987504541000
Q 004593 173 REYFEDVDQTWETFEKTLWTHISN--------FYKLSKES-PQTLVRALRVV-EMQEILD-Q-QLAEEAAEAEGDGVMAT 240 (743)
Q Consensus 173 ~~~f~~v~~l~~~l~~~i~~~~~~--------~l~l~~~~-p~~lv~a~rIi-e~EE~~D-~-~~~~~~~~~~~~~~~~~ 240 (743)
+.|+.--..+++.|...+|.-..+ .+.-.+=. +........++ +..+... . ++. ..+..+ ...
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~~~ls~~l~~~L~~~kWp~~~~~~~~~~~~~~~~~~~~~l~kL~-~Lq~p~---~~~- 222 (706)
T 3fhn_A 148 AAYNKLKSKVTGKYNDVIIQRLATNWSNTFDQKLLEAQWDTQKFASTSVGLVKCLRENSTKLYQLS-LLYLPL---EEE- 222 (706)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTTSTTCCGGGSHHHHHHHHHHHHHHHHH-TTCCCC---CCC-
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCC---CCC-
T ss_conf 553100177999999999999999999999999998699972137861457999999988889999-882664---223-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHH
Q ss_conf 14752001001134321135654210-126720499999999999999999999887---46-20999999788865149
Q 004593 241 IANPRRSAKKSTTAMASSKNLTQQKL-KVQGKHYKDKCYEKIRKTVEGRFNKLLTEL---VF-EDLKAALEETRTIGGEL 315 (743)
Q Consensus 241 ~~~~~~~~k~~~~~~~~~~~~~~~~~-~~~pr~~k~~~~~~l~~sv~~~~~~~~~~~---~~-~d~~~~L~~~~~i~~dL 315 (743)
..+++.+..-.+ .+ +..|.-| -++++-.-..-||.--+..- .. +....+++. ++-.-|
T Consensus 223 ---------~~~~~~~~~~~~---~~~~~~p~ll---p~~~L~~P~~~RFrYHF~g~k~TdKpEwyf~Fl~~--~lq~~L 285 (706)
T 3fhn_A 223 ---------TQNGDSERPLSR---SNNNQEPVLW---NFKSLANNFNVRFTYHFHATSSSSKIETYFQFLND--YLAENL 285 (706)
T ss_dssp ------------------------------CCCH---HHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHH--HHHHHH
T ss_pred ---------CCCCCCCCCCCC---CCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH--HHHHHH
T ss_conf ---------443210124443---3578986300---19999999998855512899988880899999999--999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHCHHHHHHHHHH-CCCCCCCCCCCCCC
Q ss_conf 9998605455776341799999-9999999999999862-0479982347998812688699685-27987221124677
Q 004593 316 GDIYDYVAPCFPPRYEIFQLMV-NLYTERFIQMLRLLSD-RANELTNIEILKVTGWVVEYQDNLI-GLGVDESLAQVCSE 392 (743)
Q Consensus 316 ~~v~~~~~~~fP~~~~I~~~y~-~~yH~~l~~~L~~l~~-~~~el~~~~ll~ll~Wv~~Y~~~l~-~l~i~~~~l~~ll~ 392 (743)
..+.......++ ... ..|+ ..|-.++-..+++=+. .-+.-+...+..++.=+..|-..+. .++-+..-+ .
T Consensus 286 ~~~~~~f~d~~~-~~~--~~~~~~eFI~~LL~~vreKl~~~l~~~d~~lLsHlI~Ell~FD~~Lr~~~~Y~~~Gl----~ 358 (706)
T 3fhn_A 286 YKCINIFHDDCN-GLT--KPVIHEQFINYVLQPIRDKVRSTLFQNDLKTLIVLISQILATDKNLLNSFHYHGLGL----V 358 (706)
T ss_dssp HHHHHHHCBGGG-TBC--HHHHHHHHHHHHSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCG----G
T ss_pred HHHHHHHCCCCC-CCC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----H
T ss_conf 998987414432-321--567999999987999999999672625668999999999999999999649999860----0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHH----CCHHHHHHH
Q ss_conf 785367999999999999999999998520049999999996236613489998999999---8762----061369999
Q 004593 393 SGAMDPLMNAYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQ---IVRD----NSTDVMLYR 465 (743)
Q Consensus 393 ~~~~~~L~~~Yi~~~~~~l~ew~~~~l~~er~~~Pe~d~dG~~~t~~~vdifqmi~qql~---~a~~----~~~~~~~~~ 465 (743)
.-..+...+.+++..++.-.+=++.++.. |+ . .|+++..+..+++.--+ .... .-..... +
T Consensus 359 ~li~~~~f~~WL~~Ek~fA~~rf~~Ii~s-----~d-----~-lt~sA~~~~~LLe~It~~l~~~~~~rY~~L~~~~~-K 426 (706)
T 3fhn_A 359 SLISDEVWEKWINYEVEMANRQFINITKN-----PE-----D-FPKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYKL-M 426 (706)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHTTSS-----GG-----G-GGGHHHHHHHHHHHHHHHHSHHHHCCCGGGGHHHH-H
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----CC-----C-CCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHH-H
T ss_conf 01547899999999999999999998719-----76-----5-87799999999999987244542132164412689-9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-CC-------------CCCHHHHEECCC------HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999999998519798-88-------------810001102462------751999999977711049932
Q 004593 466 ISLAIIQVMIDFQAAERQRLAEPAS-EI-------------GLEPLCAIINNN------LRCYDLAMELSTSTIESLPPN 525 (743)
Q Consensus 466 v~~~~~~~l~~f~~~y~~~l~~~~~-~~-------------~~~~liA~~N~~------~~c~e~~~~l~~~~~~~v~~~ 525 (743)
. +...-......|...+..... +. +++.+|-+.|.- .-+.+.-..+..+-....+.-
T Consensus 427 l---~f~IqiqL~d~Y~~~L~~~s~lgr~~tke~~~~~g~~~L~~L~~V~~~L~dWsddvfFLeLw~~l~~~t~s~~gSI 503 (706)
T 3fhn_A 427 T---CSLIFMNLTSSYLDYILTVDSLNETRTKEQELYQTMAKLQHVNFVYRKIKSLSSNFIFIQLTDIVNSTESKKYNSL 503 (706)
T ss_dssp H---HHHHHHHHHHHHHHHHHTCCCSCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCCCSCT
T ss_pred H---HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 9---9999986279999998075520345665888887899999999999999996689416878998716567666760
Q ss_pred HHHH---------H-HHHHHHHHHHCCHHHHHHHHHCCC-CCCCCC--------------HH-HHHHHHHHHHHHHHHHH
Q ss_conf 5779---------8-999999998189223798740045-365771--------------01-45688639999999999
Q 004593 526 YAEQ---------E-ALFHLISVIFDDPEVQQLFLKLYS-KEWSDG--------------QV-TEYILPTFSDYFADVKM 579 (743)
Q Consensus 526 ~~~~---------~-~~~~l~~~if~D~~l~p~~~~lft-~~W~~~--------------~~-v~~I~~Ti~dy~~d~~~ 579 (743)
|.+. . ....++..++.+ ++..++.-+. ..|.+. ++ ....+.++..++.-+..
T Consensus 504 FDetIs~Y~~L~~~~~~~~Iv~~v~~e--ik~~lK~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~ 581 (706)
T 3fhn_A 504 FQNVENDYEKAMSTDMQNSIVHRIQKL--LKETLRNYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDS 581 (706)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHH--HHHHTHHHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999888999999999999--999998774816685667877666555688988899999999999999998
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8-633489999999999999999999960787685688999999999999998512441112134553899998551498
Q 004593 580 F-VEERSFRRFVEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKVESKVRVLTDMRELASANS 658 (743)
Q Consensus 580 ~-L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~v~~~~~~l~~l~~ll~~~d 658 (743)
. +.+..|..++..++..+.......++.+. .++..++.|+..|...+...|. +|.+. ....++.+.-...||++.-
T Consensus 582 ~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~n-kFS~~Ga~Qf~~D~~~L~~v~~-lp~~~-~~~~~~~L~E~l~LL~L~~ 658 (706)
T 3fhn_A 582 MDIPLAISLKVKNELLNVIVNYFTESILKLN-KFNQNGLNQFLHDFKSLSSILS-LPSHA-TNYKCMSLHELVKILKLKY 658 (706)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTTTTTS-CBCHHHHHHHHHHHHHHHTTSC-CCTTC-CCHHHHHHHHHHHHHGGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHHCCCCC
T ss_conf 1377789999999999999999999998608-6488889999999999999856-88841-4567799999999817988
Q ss_pred HHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 445899999--9763199999999999999716999476999999
Q 004593 659 VDAFALIYT--NVLEHQPDCPPEVVERLVALREAIPRKDAKEIVQ 701 (743)
Q Consensus 659 ~~~i~~e~~--~l~~~~pD~s~~~v~aiL~~R~Dl~r~~~~~il~ 701 (743)
... ..++. ++.+ ...-+.+...+.+. .++-+++...+=
T Consensus 659 d~~-~~~f~~~~y~~---~~~~~~l~~~~~i~-~l~~~~i~d~ly 698 (706)
T 3fhn_A 659 DPN-NQQFLNPEYIK---TGNFTSLKEAYSIK-YLKDTKIQDALY 698 (706)
T ss_dssp CGG-GTTTTSHHHHH---HCCCSHHHHHHTCS-SSCHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHC---CCCHHHHHHHCCCC-CCCHHHHHHHHH
T ss_conf 742-20677898870---17748899864864-688789999999
No 6
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=22.60 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 145688639999999999-8633489999999999999999999960787685688999999999999998512441112
Q 004593 562 VTEYILPTFSDYFADVKM-FVEERSFRRFVEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKV 640 (743)
Q Consensus 562 ~v~~I~~Ti~dy~~d~~~-~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~v 640 (743)
.++.|+..+..++.-++. +++|.+...++.++...+-..-++.|+-++..|+-.-|.+|+.....|.+.+...+-.. .
T Consensus 203 ~~~~Il~~L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~nls~Le~W~~~~~l~~-a 281 (419)
T 2f6h_X 203 TMDDILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGLTD-G 281 (419)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTCTT-H
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH-H
T ss_conf 899999999999999998599999999999999999889999999646754552547989944999999998769816-9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC--C----CCHHHHHHHHHHHHHH
Q ss_conf 1345538999985514984458999999763199999999999999716--9----9947699999999999
Q 004593 641 ESKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALRE--A----IPRKDAKEIVQECKEI 706 (743)
Q Consensus 641 ~~~~~~l~~l~~ll~~~d~~~i~~e~~~l~~~~pD~s~~~v~aiL~~R~--D----l~r~~~~~il~~~~~~ 706 (743)
...+..+-..+.++.+... .. .++..+...+|.+++.++.+||.+=. + ++.+-.+.+....++-
T Consensus 282 ~~~L~~l~Qa~~lLq~~k~-~~-~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~~e~~v~~~~i~~v~~~~~~~ 351 (419)
T 2f6h_X 282 TECLQHLIQTAKLLQVRKY-TI-EDIDILRGICYSLTPAQLQKLISQYQVADYESPIPQEILRYVADIVKKE 351 (419)
T ss_dssp HHHTHHHHHHHHHTTSCCS-SH-HHHHHHHHHTTTSCHHHHHHHHHHCCCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-CH-HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 9999999999999863787-43-1199999870007899999999818876588889999999999998613
No 7
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=22.21 Aligned_cols=145 Identities=8% Similarity=0.091 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 145688639999999999-8633489999999999999999999960787685688999999999999998512441112
Q 004593 562 VTEYILPTFSDYFADVKM-FVEERSFRRFVEACLEETIVLFIDHLLSQKNYIKEITIERMREDEEAIIEAFREYVSVNKV 640 (743)
Q Consensus 562 ~v~~I~~Ti~dy~~d~~~-~L~~~~~~~l~~~l~~~~v~~Yi~~l~k~~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~v 640 (743)
.++.|+..+..++.-.+. +++|.....++.++...+-...++.++-++..|+-.-+.+|+.....+.+.... +.+. .
T Consensus 187 s~~~Il~~L~~~~~~L~~~~V~p~li~QlfsQLF~fIna~lFN~LLlRr~~cs~s~G~qIr~NLs~LEeW~~~-~l~~-a 264 (386)
T 3mmi_A 187 KFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLITKCPALNWKYGYEVDRNIERLVSWFEP-RIED-V 264 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHTT-TSSC-C
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCHH-H
T ss_conf 7999999999999999985999999999999999998599999987567666752489999649999999983-6677-9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHH
Q ss_conf 1345538999985514984458999999763199999999999999716999---476999999999999810
Q 004593 641 ESKVRVLTDMRELASANSVDAFALIYTNVLEHQPDCPPEVVERLVALREAIP---RKDAKEIVQECKEIYENS 710 (743)
Q Consensus 641 ~~~~~~l~~l~~ll~~~d~~~i~~e~~~l~~~~pD~s~~~v~aiL~~R~Dl~---r~~~~~il~~~~~~~~~~ 710 (743)
...+..+...+.++.+. .... .++..+...+|.+++.++.+||..=.+-+ ..--.+++...+...+..
T Consensus 265 ~~~L~~L~QA~~LLQ~~-K~t~-~Di~~i~~~C~~Lsp~QL~kIL~~Y~p~~~~E~~V~~e~i~~v~~~lk~~ 335 (386)
T 3mmi_A 265 RPNLIQIIQAVKILQLK-ISNL-NEFKLLFDFWYALNPAQIQAILLKYKPANKGEAGVPNEILNYLANVIKRE 335 (386)
T ss_dssp GGGGHHHHHHHHHHHCC-CCCH-HHHHHHHTTCCSSCHHHHHHHHHTBCCC-----CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CCCH-HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999999997437-8878-78999998664389999999998386777788889999999999998246
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=18.42 Aligned_cols=193 Identities=11% Similarity=0.083 Sum_probs=93.7
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_conf 9993-4229999999999985399999789999999999999999999999999999899999998984----9967702
Q 004593 24 LPDQ-LQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQEC----QTLIENH 98 (743)
Q Consensus 24 ~p~~-L~ki~~~~~~~~~k~~~id~~Lk~~vq~qle~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~----~~~v~~~ 98 (743)
+|.+ |+=|..|++=+.+|+..+ .++.+-.+.|+.+|.+|...|.+++.++...+....+. +.+...+
T Consensus 1893 TP~syLeli~~y~~ll~~K~~el--------~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1893 TPRHYLDFINQVVLLINEKRDQL--------EEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97999999999999999999999--------9999999988999999999999999999998999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 889-99999999999999988635-5176899999712028714799999999999379999999601825789999983
Q 004593 99 NQI-KLLSNARNNLNTTLKDVEGM-MSISVEAAEARDSLGDDKELVNTYERLTALDGKRRFALAAAASHIDEVGRLREYF 176 (743)
Q Consensus 99 ~~I-k~l~~~~~nl~~~~~~l~~l-~~~~~~~~~~~~~l~e~~nLL~ah~~L~~Le~~rd~~l~~~~~~~~~~~~l~~~f 176 (743)
..= ..+...+.......+.++.. ..+...-++.+.-|.+..=..+--..|.+++.--+.++.+... -+..|...-
T Consensus 1965 ~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~---~~~~L~~le 2041 (3245)
T 3vkg_A 1965 VQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDE---IVATITALE 2041 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_conf 99999999999999999999999999999999999999864699982999999999999999999999---999999999
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1178999999999999997899975218811567999998424721898999
Q 004593 177 EDVDQTWETFEKTLWTHISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEE 228 (743)
Q Consensus 177 ~~v~~l~~~l~~~i~~~~~~~l~l~~~~p~~lv~a~rIie~EE~~D~~~~~~ 228 (743)
+.|+.+.+.|+..+...-.=-- -+..-...|.+|-+.|.--..+-.||.+.
T Consensus 2042 ~~l~~L~~~~~~~~~ek~~L~~-e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2042 KSIATYKEEYATLIRETEQIKT-ESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999999999999999-99999999999999998621131329999
No 9
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=1.00 E-value=1 Score=17.18 Aligned_cols=11 Identities=0% Similarity=-0.257 Sum_probs=3.6
Q ss_pred HHCHHHHHHHH
Q ss_conf 31178999999
Q 004593 176 FEDVDQTWETF 186 (743)
Q Consensus 176 f~~v~~l~~~l 186 (743)
+..++.+..|+
T Consensus 135 ~~~a~~~~~Wl 145 (250)
T 1quu_A 135 AKRAAPFNNWM 145 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99868999999
No 10
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=1.00 E-value=1 Score=17.09 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHH-HHCCCCHH
Q ss_conf 458999999763199999999999999-71699947
Q 004593 660 DAFALIYTNVLEHQPDCPPEVVERLVA-LREAIPRK 694 (743)
Q Consensus 660 ~~i~~e~~~l~~~~pD~s~~~v~aiL~-~R~Dl~r~ 694 (743)
+.....+..|...||+++...++.+|. ++||++++
T Consensus 2 ~~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~A 37 (49)
T 1otr_A 2 DDHESKLSILMDMFPAISKSKLQVHLLENNNDLDLT 37 (49)
T ss_dssp CSHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf 225889999998789998999999999929989999
Done!