Query 004593
Match_columns 743
No_of_seqs 165 out of 403
Neff 8.2
Searched_HMMs 13730
Date Tue Mar 26 18:56:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004593.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1891-1895//hhsearch_scop/004593hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mn3a_ a.5.2.4 (A:) Vacuolar 18.1 17 0.0013 11.6 3.2 32 659-690 9-40 (54)
2 d1gqea_ e.38.1.1 (A:) Polypept 16.3 19 0.0014 11.3 11.8 69 53-123 4-72 (362)
3 d2fh5a1 d.110.4.4 (A:1-129) Si 10.2 27 0.002 10.3 -0.1 74 530-609 27-102 (129)
4 d1wgla_ a.5.2.4 (A:) Toll-inte 8.2 38 0.0027 9.4 4.0 26 664-689 11-36 (59)
5 d1cuna2 a.7.1.1 (A:116-219) Sp 7.5 42 0.0031 9.1 9.4 16 74-89 71-86 (104)
6 d1kxpd3 a.126.1.1 (D:405-473) 6.6 50 0.0036 8.6 1.6 24 668-691 21-44 (69)
7 d1j5wa_ d.104.1.1 (A:) Glycyl- 5.0 70 0.0051 7.7 4.7 34 677-710 238-271 (281)
8 d3c5wc1 d.159.1.3 (C:6-293) Pr 4.6 78 0.0057 7.4 2.4 18 190-207 23-40 (288)
9 d2d8ya2 g.39.1.3 (A:44-85) Epl 4.4 82 0.006 7.2 0.9 12 545-556 23-34 (42)
10 d2spca_ a.7.1.1 (A:) Spectrin 4.0 92 0.0067 6.9 10.0 72 25-100 32-103 (107)
No 1
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.08 E-value=17 Score=11.58 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 44589999997631999999999999997169
Q 004593 659 VDAFALIYTNVLEHQPDCPPEVVERLVALREA 690 (743)
Q Consensus 659 ~~~i~~e~~~l~~~~pD~s~~~v~aiL~~R~D 690 (743)
.......+..|..-||++..+.++++|..+++
T Consensus 9 ~~e~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G 40 (54)
T d1mn3a_ 9 ENERKDTLNTLQNMFPDMDPSLIEDVCIAKKS 40 (54)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 99999999999988799979999999999299
No 2
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=16.31 E-value=19 Score=11.31 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999989999999898499677028899999999999999998863551
Q 004593 53 VAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENHNQIKLLSNARNNLNTTLKDVEGMMS 123 (743)
Q Consensus 53 vq~qle~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~ 123 (743)
++.++.....-+..|... =++..++..+.+++..+.++... .+-...+.++.-+..|...+...+.+..
T Consensus 4 l~~~i~eL~~rl~~Lr~~-fDld~kk~Rl~ELE~~lsdP~fW-~D~~kAqkl~KE~s~L~~iVe~~~~l~~ 72 (362)
T d1gqea_ 4 VNNRIQDLTERSDVLRGY-LDYDAKKERLEEVNAELEQPDVW-NEPERAQALGKERSSLEAVVDTLDQMKQ 72 (362)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHSGGGG-GSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCCCHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999977-69798999999999986397144-4999999999999999999999999999
No 3
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.15 E-value=27 Score=10.32 Aligned_cols=74 Identities=5% Similarity=0.012 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHCC-H-HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8999999998189-2-2379874004536577101456886399999999998633489999999999999999999960
Q 004593 530 EALFHLISVIFDD-P-EVQQLFLKLYSKEWSDGQVTEYILPTFSDYFADVKMFVEERSFRRFVEACLEETIVLFIDHLLS 607 (743)
Q Consensus 530 ~~~~~l~~~if~D-~-~l~p~~~~lft~~W~~~~~v~~I~~Ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~k 607 (743)
.+++.|++.++.+ . .-.+.-.+=++-+|.-....+.+...+ |+..++.+|.+.|+..++..|+..|-..+..
T Consensus 27 ~~IN~LI~~vlLEER~~~~~~~~d~y~lkw~~~Ne~~lvfV~v------YQ~il~l~yvd~lL~~i~~~F~~~y~~~l~~ 100 (129)
T d2fh5a1 27 GPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFELVFVVG------FQKILTLTYVDKLIDDVHRLFRDKYRTEIQQ 100 (129)
T ss_dssp CHHHHHHHHTGGGC-------CCCCCEEEEEEETTTTEEEEEE------ESCGGGHHHHHHHHHHHHHHHHHHTHHHHHS
T ss_pred HHHHHHHHHHHEECCCCCCCEEECCEEEEEEEECCCCEEEEEE------EHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1589999875020125898633878889999925678899998------7202031889999999999999998888513
Q ss_pred CC
Q ss_conf 78
Q 004593 608 QK 609 (743)
Q Consensus 608 ~~ 609 (743)
.+
T Consensus 101 ~~ 102 (129)
T d2fh5a1 101 QS 102 (129)
T ss_dssp SS
T ss_pred CC
T ss_conf 44
No 4
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.16 E-value=38 Score=9.42 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=21.4
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 99999763199999999999999716
Q 004593 664 LIYTNVLEHQPDCPPEVVERLVALRE 689 (743)
Q Consensus 664 ~e~~~l~~~~pD~s~~~v~aiL~~R~ 689 (743)
..+..|...||++..+.|+++|...+
T Consensus 11 e~i~~LkeMFP~~D~~vI~~VL~a~~ 36 (59)
T d1wgla_ 11 EDLKAIQDMFPNMDQEVIRSVLEAQR 36 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 99999999878877999999999939
No 5
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.50 E-value=42 Score=9.11 Aligned_cols=16 Identities=0% Similarity=0.192 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999998999999989
Q 004593 74 INQLRENFISIERYCQ 89 (743)
Q Consensus 74 v~~i~~~~~~i~~~~~ 89 (743)
...|++.+..+...+.
T Consensus 71 ~~~I~~~~~~l~~~w~ 86 (104)
T d1cuna2 71 VENITAKMKGLKGKVS 86 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999999999999
No 6
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.57 E-value=50 Score=8.64 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=15.4
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 976319999999999999971699
Q 004593 668 NVLEHQPDCPPEVVERLVALREAI 691 (743)
Q Consensus 668 ~l~~~~pD~s~~~v~aiL~~R~Dl 691 (743)
.|.+.+||.++..++-+...|.||
T Consensus 21 ~lr~k~P~as~~~l~~mVekrsdf 44 (69)
T d1kxpd3 21 RLKAKLPDATPKELAKLVNKRSDF 44 (69)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 998528999989999999987279
No 7
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=5.05 E-value=70 Score=7.70 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999716999476999999999999810
Q 004593 677 PPEVVERLVALREAIPRKDAKEIVQECKEIYENS 710 (743)
Q Consensus 677 s~~~v~aiL~~R~Dl~r~~~~~il~~~~~~~~~~ 710 (743)
...|+=.+|++||-+|-+++...+..+|.+.+..
T Consensus 238 KaSH~FNLLDARGaISVTERa~YI~RIR~LAk~~ 271 (281)
T d1j5wa_ 238 KCSHTFNLLDARGAISVSQRQTYVKRIQAMARKA 271 (281)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9887876461168854899899999999999999
No 8
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.58 E-value=78 Score=7.36 Aligned_cols=18 Identities=0% Similarity=-0.036 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHCCCCH
Q ss_conf 999997899975218811
Q 004593 190 LWTHISNFYKLSKESPQT 207 (743)
Q Consensus 190 i~~~~~~~l~l~~~~p~~ 207 (743)
|..++..+..+.+.+|.+
T Consensus 23 i~~L~~~a~~il~~e~~l 40 (288)
T d3c5wc1 23 VKSLCEKAKEILTKESNV 40 (288)
T ss_dssp HHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHHHHHHHHHCCCE
T ss_conf 999999999999849987
No 9
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.40 E-value=82 Score=7.22 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=9.4
Q ss_pred HHHHHHHCCCCC
Q ss_conf 379874004536
Q 004593 545 VQQLFLKLYSKE 556 (743)
Q Consensus 545 l~p~~~~lft~~ 556 (743)
++|||++||.++
T Consensus 23 CkpHf~qLF~~k 34 (42)
T d2d8ya2 23 CKPHFNQLFKSK 34 (42)
T ss_dssp CHHHHHHHSCCC
T ss_pred CHHHHHHHHHHH
T ss_conf 598899997730
No 10
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}
Probab=4.02 E-value=92 Score=6.91 Aligned_cols=72 Identities=7% Similarity=0.008 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9934229999999999985399999789999999999999999999999999999899999998984996770288
Q 004593 25 PDQLQFIGDMKADYIARQQANDAQLSTMVAEQIEQAQTGLESLALSQNTINQLRENFISIERYCQECQTLIENHNQ 100 (743)
Q Consensus 25 p~~L~ki~~~~~~~~~k~~~id~~Lk~~vq~qle~~~~gl~~L~~a~~~v~~i~~~~~~i~~~~~~~~~~v~~~~~ 100 (743)
|.|++.+. ...++...++..+.+....--.-...|-..+.....+...|+..+..+...+......+...+.
T Consensus 32 g~d~~~~~----~l~~~h~~~~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~L~~~~~~r~~ 103 (107)
T d2spca_ 32 ANAGGNVE----ALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRS 103 (107)
T ss_dssp HCCCSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999----9999999999999973999999999999998709985899999999999999999999999996
Done!