BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004594
(743 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
+ +L+ S + +R W + G C
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKC 144
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 73
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ + S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 74 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 236
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S + +SS D R+WDT + + V + F P+ + +L + +N+ ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 221
Query: 668 WSINNGSCAGVF 679
W + G C +
Sbjct: 222 WDYSKGKCLKTY 233
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 245
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 303
Query: 661 NNSEIRYW 668
N+ I+ +
Sbjct: 304 NDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
+ +L+ S + +R W + G C
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKC 144
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 73
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ + S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 74 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 236
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S + +SS D R+WDT + + V + F P+ + +L + +N+ ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 221
Query: 668 WSINNGSCAGVF 679
W + G C +
Sbjct: 222 WDYSKGKCLKTY 233
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 245
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 303
Query: 661 NNSEIR 666
N+ I+
Sbjct: 304 NDKTIK 309
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
+ +L+ S + +R W + G C
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKC 144
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 12/118 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA SSAD+ +++W + + +T +GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISD 73
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ + S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 74 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 236
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S + +SS D R+WDT + + V + F P+ + +L + +N+ ++
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 221
Query: 668 WSINNGSCAGVF 679
W + G C +
Sbjct: 222 WDYSKGKCLKTY 233
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 245
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 303
Query: 661 NNSEIRYW 668
N+ I+ W
Sbjct: 304 NDKTIKLW 311
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 512 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571
GS D V + + AD + F +I ++V+ +S DG LA
Sbjct: 76 GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 572 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
T DK +W T E + S L+EH+Q + V + PS + LA+SS D TVR+W
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 628 NPDYS-LRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 668
+ D+ + GH TV S DF ++ LCS ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W +
Sbjct: 96 LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 153
Query: 671 NNGSC 675
G C
Sbjct: 154 KTGKC 158
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 88
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 89 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 250
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S + +SS D R+WDT + + V + F P+ + +L + +N+ ++
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 235
Query: 668 WSINNGSCAGVF 679
W + G C +
Sbjct: 236 WDYSKGKCLKTY 247
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 259
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 317
Query: 661 NNSEIRYW 668
N+ I+ W
Sbjct: 318 NDKTIKLW 325
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Query: 625 DTE 627
++
Sbjct: 326 KSD 328
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W +
Sbjct: 84 LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 141
Query: 671 NNGSC 675
G C
Sbjct: 142 KTGKC 146
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 76
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 77 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 238
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S + +SS D R+WDT + + V + F P+ + +L + +N+ ++
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 223
Query: 668 WSINNGSCAGVF 679
W + G C +
Sbjct: 224 WDYSKGKCLKTY 235
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 260
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 261 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 313
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Query: 625 DTE 627
++
Sbjct: 314 KSD 316
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W +
Sbjct: 85 LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 142
Query: 671 NNGSC 675
G C
Sbjct: 143 KTGKC 147
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 77
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 78 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 239
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D R+WDT + + V + F P+ + +L + +N+ ++ W + G C
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLK 234
Query: 678 VF 679
+
Sbjct: 235 TY 236
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 261
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 262 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 314
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W +
Sbjct: 78 LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 135
Query: 671 NNGSC 675
G C
Sbjct: 136 KTGKC 140
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 70
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 71 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 232
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S + +SS D R+WDT + + V + F P+ + +L + +N+ ++
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 217
Query: 668 WSINNGSCAGVF 679
W + G C +
Sbjct: 218 WDYSKGKCLKTY 229
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 241
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 242 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 299
Query: 661 NNSEIRYW 668
N+ I+ W
Sbjct: 300 NDKTIKLW 307
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 248 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Query: 625 DTE 627
++
Sbjct: 308 KSD 310
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 C 675
C
Sbjct: 147 C 147
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 77
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 78 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 239
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D R+WDT + + V + F P+ + +L + +N+ ++ W + G C
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLK 234
Query: 678 VF 679
+
Sbjct: 235 TY 236
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 248
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 306
Query: 661 NNSEIRYW 668
N+ I+ W
Sbjct: 307 NDKTIKLW 314
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 C 675
C
Sbjct: 147 C 147
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 77
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 78 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 239
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D R+WDT + + V + F P+ + +L + +N+ ++ W + G C
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLK 234
Query: 678 VF 679
+
Sbjct: 235 TY 236
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 248
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 306
Query: 661 NNSEIRYW 668
N+ I+ W
Sbjct: 307 NDKTIKLW 314
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W +
Sbjct: 79 LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 136
Query: 671 NNGSC 675
G C
Sbjct: 137 KTGKC 141
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 71
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 72 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 233
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S + +SS D R+WDT + + V + F P+ + +L + +N+ ++
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 218
Query: 668 WSINNGSCAGVF 679
W + G C +
Sbjct: 219 WDYSKGKCLKTY 230
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 242
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 300
Query: 661 NNSEIRYW 668
N+ I+ W
Sbjct: 301 NDKTIKLW 308
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 625 DTE 627
++
Sbjct: 309 KSD 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W +
Sbjct: 75 LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 132
Query: 671 NNGSC 675
G C
Sbjct: 133 KTGKC 137
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 66
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ + S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 67 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 229
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S + +SS D R+WDT + + V + F P+ + +L + +N+ ++
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 214
Query: 668 WSINNGSCAGVF 679
W + G C +
Sbjct: 215 WDYSKGKCLKTY 226
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 238
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 239 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 296
Query: 661 NNSEIRYW 668
N+ I+ W
Sbjct: 297 NDKTIKLW 304
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 245 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Query: 625 DTE 627
++
Sbjct: 305 KSD 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W +
Sbjct: 79 LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 136
Query: 671 NNGSC 675
G C
Sbjct: 137 KTGKC 141
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 71
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 72 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 233
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D R+WDT + + V + F P+ + +L + +N+ ++ W + G C
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLK 228
Query: 678 VF 679
+
Sbjct: 229 TY 230
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 242
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 300
Query: 661 NNSEIRYW 668
N+ I+ W
Sbjct: 301 NDKTIKLW 308
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 625 DTE 627
++
Sbjct: 309 KSD 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W +
Sbjct: 80 LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 137
Query: 671 NNGSC 675
G C
Sbjct: 138 KTGKC 142
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 72
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 73 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 234
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ + ++ V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S + +SS D R+WDT + + V + F P+ + +L + +N+ ++
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 219
Query: 668 WSINNGSCAGVF 679
W + G C +
Sbjct: 220 WDYSKGKCLKTY 231
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 256
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 257 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 309
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 250 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Query: 625 DTE 627
++
Sbjct: 310 KSD 312
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 107 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 675 C 675
C
Sbjct: 165 C 165
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 95
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 96 AWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 257
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 193
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D R+WDT + + V + F P+ + +L + +N+ ++ W + G C
Sbjct: 194 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLK 252
Query: 678 VF 679
+
Sbjct: 253 TY 254
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 279
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 280 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 332
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Query: 625 DTE 627
++
Sbjct: 333 KSD 335
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 C 675
C
Sbjct: 163 C 163
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 93
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 94 AWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 255
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D R+WDT + + V + F P+ + +L + +N+ ++ W + G C
Sbjct: 192 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLK 250
Query: 678 VF 679
+
Sbjct: 251 TY 252
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 277
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 278 SEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 330
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 625 DTE 627
++
Sbjct: 331 KSD 333
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 86 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 C 675
C
Sbjct: 144 C 144
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 74
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 75 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D R+WDT + + V + F P+ + +L + +N +++ W + G C
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-DLKLWDYSKGKCLK 231
Query: 678 VF 679
+
Sbjct: 232 TY 233
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D +++WD L+T+TGH
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGK-CLKTYTGH 236
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG----HKNEKYCIFA 245
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 303
Query: 661 NNSEIRYW 668
N+ I+ W
Sbjct: 304 NDKTIKLW 311
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 86 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 C 675
C
Sbjct: 144 C 144
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 74
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
+ S +LL S ++ ++ W +++G C K CN P +I+ G F
Sbjct: 75 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
P+ + ++ D T+++WD L+T+TGH
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH 236
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V C+F+P L+ +G D+ +W ++ TL H+ ++ V F+ S + +SS
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D R+WDT + + V + F P+ + +L + +N+ ++ W + G C
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLK 231
Query: 678 VF 679
+
Sbjct: 232 TY 233
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 563 FSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDVRFSPSLSR-LATS 615
FSP+GK + D LW C +++T ++ ++ FS + + + +
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVTGGKWIVSG 258
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYW 668
S D V +W+ + + ++ GH+ V+S HP+ E+++ S +N+ I+ W
Sbjct: 259 SEDNMVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 311
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E + A +S V FSPDG+ +A+ DK LW ++ TL H+ + V FS
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFS 66
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P +A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 67 PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VK 123
Query: 667 YWSIN 671
W+ N
Sbjct: 124 LWNRN 128
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FS
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFS 394
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P +A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 395 PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VK 451
Query: 667 YWSIN 671
W+ N
Sbjct: 452 LWNRN 456
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 108
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 109 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 165
Query: 668 WSIN 671
W+ N
Sbjct: 166 WNRN 169
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 231
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 232 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT-VKL 288
Query: 668 WSIN 671
W+ N
Sbjct: 289 WNRN 292
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V F PDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 313
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ N + L+T TGHS++V + F P + + + D+ + ++
Sbjct: 314 DGQTIASASDDKTVKLWN-RNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 370
Query: 668 WSIN 671
W+ N
Sbjct: 371 WNRN 374
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 190
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 191 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKL 247
Query: 668 WSIN 671
W+ N
Sbjct: 248 WNRN 251
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 518
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + S ++ ++
Sbjct: 519 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQ-TIASASSDKTVKL 575
Query: 668 W 668
W
Sbjct: 576 W 576
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPD + +A+ DK LW ++ TL H+ + V FSP
Sbjct: 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 477
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 478 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKL 534
Query: 668 WSIN 671
W+ N
Sbjct: 535 WNRN 538
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 559
Query: 608 SLSRLATSSADRTVRVWD 625
+A++S+D+TV++W+
Sbjct: 560 DGQTIASASSDKTVKLWN 577
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRL 612
++V+S ++P G LLAT DK +W + + S L HTQ + V + PS L
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 613 ATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
A++S D TV+++ E D+ T GH +TV SL F PS + L SC ++ +R W
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCSDDRTVRIW 221
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADR 619
++P G LLA+ G D++ +W TE S+ KS L E H + + V +SP + LA++S D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 620 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
T +W D+ + T GH V S+ + PS +LL +C + + W ++
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDE 136
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 563 FSPDGKLLATGGHDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
+SP G LA+ D +W + F +TLE H + V ++PS + LAT S D++
Sbjct: 69 WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
Query: 621 VRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDL 655
V VW+ + D + H+ V + +HPS+E L
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F 587
RD+ EV + + ++ + T V+ + P +LLA+ +D L+ E +
Sbjct: 125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
+TLE H + + F PS RLA+ S DRTVR+W
Sbjct: 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLW------------CT---ESFTVKSTLEE-HTQW 599
S V S F P G+ LA+ D+ +W C+ S+ TL H++
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254
Query: 600 ITDVRFSPSLSRLATSSADRTVRVW------DTENPDYSL--RTFTGHSTTVMSLDFHPS 651
I D+ + LAT+ D +RV+ D + P +SL HS V + ++P
Sbjct: 255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK 314
Query: 652 KEDLLCSCDNNSEIRYW 668
+ LL SC ++ E+ +W
Sbjct: 315 EPGLLASCSDDGEVAFW 331
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P+S + S FSPDGK LATG D+ +W E+ + L+ H Q I + + PS +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
L + S DRTVR+WD SL T +++ P + + + +R W
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV--SPGDGKYIAAGSLDRAVRVWDSE 237
Query: 672 NG 673
G
Sbjct: 238 TG 239
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---------------- 598
TS V FS DG+ LATG + V ++ V ++
Sbjct: 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123
Query: 599 -WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657
+I V FSP LAT + DR +R+WD EN + GH + SLD+ PS D L
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPSG-DKLV 181
Query: 658 SCDNNSEIRYWSINNGSCA 676
S + +R W + G C+
Sbjct: 182 SGSGDRTVRIWDLRTGQCS 200
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 20/136 (14%)
Query: 558 VESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEE------HTQWITDVRFSPSL 609
V + SP DGK +A G D+ +W +E+ F V+ E H + V F+
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 610 SRLATSSADRTVRVWDTENPDYSLR-----------TFTGHSTTVMSLDFHPSKEDLLCS 658
+ + S DR+V++W+ +N + T+ GH V+S+ + E +L S
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-S 327
Query: 659 CDNNSEIRYWSINNGS 674
+ + +W +G+
Sbjct: 328 GSKDRGVLFWDKKSGN 343
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 33/178 (18%)
Query: 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542
SL + DG+ ++ +P +++ GSLD V + S + +R+ E G G
Sbjct: 200 SLTLSIEDGVTTVAVSPGD----GKYIAAGSLDRAVRVWDS-ETGFLVERLDSENESGTG 254
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------------SFTVK 590
+ + ++ F+ DG+ + +G D+ LW + S T +
Sbjct: 255 HKDSVYSVV-----------FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTTVMSL 646
T H ++ V + + + + S DR V WD + NP L GH +V+S+
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---LLMLQGHRNSVISV 358
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V+ F GKLLA+ D LW + F T+ H ++ V P+
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWS 669
+ ++S D+T+++W+ + Y ++TFTGH V + P+++ L+ SC N+ +R W
Sbjct: 206 HIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWV 262
Query: 670 INNGSCAGVFK 680
+ C +
Sbjct: 263 VATKECKAELR 273
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F P ++ + D +W E+ + TL+ HT + D+ F S LA+ SAD T++
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+WD + + +RT GH V S+ P+ D + S + I+ W + G C F
Sbjct: 176 LWDFQGFE-CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTF 230
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
K L H +T V F P S + ++S D T++VWD E D+ RT GH+ +V + F
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFD 159
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSC 675
S + LL SC + I+ W C
Sbjct: 160 HSGK-LLASCSADMTIKLWDFQGFEC 184
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 25/166 (15%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RD+ + EV G+ F V + DG L+A+ +D+ +W +
Sbjct: 212 RDKTIKMWEVQTGYCVKTF---TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Query: 590 KSTLEEHTQWITDVRFSPSLSR--------------------LATSSADRTVRVWDTENP 629
K+ L EH + + ++P S L + S D+T+++WD +
Sbjct: 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV-ST 327
Query: 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
L T GH V + FH + +L SC ++ +R W N C
Sbjct: 328 GMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRC 372
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626
G L +G DK +W + TL H W+ V F + + + D+T+RVWD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 627 ENPDYSLRTFTGHSTTVMSLDFHPS 651
+N ++T H V SLDFH +
Sbjct: 368 KNKR-CMKTLNAHEHFVTSLDFHKT 391
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F GK + + DK +W ++ TL H ++T + F + + T S D+TV+
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Query: 623 VWD 625
VW+
Sbjct: 406 VWE 408
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ + LAT S D +++WD N T GH+ +V F P
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
E LL SC + +R W + + +
Sbjct: 763 E-LLASCSADGTLRLWDVRSAN 783
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 519 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHD 576
+S+++ AD + ++ SA T+ E + +V CHF+ LLATG +D
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 729
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
LW ++T+ HT + RFSP LA+ SAD T+R+WD + +
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS S
Sbjct: 620 PHTDAVYHAC-FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 670
+AT SAD+ V++WD+ + T+ HS V F + S LL + N+ ++ W +
Sbjct: 679 IATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 671 NNGSC 675
N C
Sbjct: 738 NQKEC 742
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 616 SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLD 647
S D+T+RVW+T +N L+ F + T V+++D
Sbjct: 908 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD 948
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
++ + A V+ D +LL + D +W + ++ H + S
Sbjct: 1043 DYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1101
Query: 607 PSLSRLATSSADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
++ +++SAD+T ++W D +P + L+ GH+ V F LL + D+N E
Sbjct: 1102 SDATKFSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRCSAFSLDG-ILLATGDDNGE 1157
Query: 665 IRYWSINNG----SCAGV 678
IR W++++G SCA +
Sbjct: 1158 IRIWNVSDGQLLHSCAPI 1175
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 548 FQLIPAST--------SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 599
QLI T ++V C SP + +A G D + + V S+ H +
Sbjct: 953 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1012
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
+ ++F+ L +SS D ++VW+ + DY H TV DF ++ L S
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVK--DFRLLQDSRLLSW 1068
Query: 660 DNNSEIRYWSINNG 673
+ ++ W++ G
Sbjct: 1069 SFDGTVKVWNVITG 1082
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWIT 601
T+ V C FSPD +LLA+ D LW S + ++ E+ +
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 809
Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
+S ++ ++ ++ V ++D TGH +T+ DF P
Sbjct: 810 CCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 857
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 522 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
L D + R+ S++ GK FT + + + V +C ++P G +A GG D
Sbjct: 68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 577 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
K ++ E+ K ++ HT +++ F+ S ++ T+S D T +WD E+
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 631 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVFK 680
L++F GH V+ LD PS+ + CD + + W + +G C F+
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFE 237
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G +GG DKKA++W S E H + VR+ PS A+ S D T R+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 624 WDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+D D + ++ S S+DF S LL + N+ I W + GS
Sbjct: 267 YDLR-ADREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGS 317
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FS G+LL G +D +W + S L H ++ +R SP + + S D T+R
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 623 VW 624
VW
Sbjct: 352 VW 353
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ + LAT S D +++WD N T GH+ +V F P
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
E LL SC + +R W + + +
Sbjct: 756 E-LLASCSADGTLRLWDVRSAN 776
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 519 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHD 576
+S+++ AD + ++ SA T+ E + +V CHF+ LLATG +D
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 722
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
LW ++T+ HT + RFSP LA+ SAD T+R+WD + +
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS S
Sbjct: 613 PHTDAVYHAC-FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 670
+AT SAD+ V++WD+ + T+ HS V F + S LL + N+ ++ W +
Sbjct: 672 IATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 671 NNGSC 675
N C
Sbjct: 731 NQKEC 735
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 616 SADRTVRVWDTE 627
S D+T+RVW+T+
Sbjct: 901 SDDQTIRVWETK 912
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
++ + A V+ D +LL + D +W + ++ H + S
Sbjct: 1036 DYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1094
Query: 607 PSLSRLATSSADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
++ +++SAD+T ++W D +P + L+ GH+ V F LL + D+N E
Sbjct: 1095 SDATKFSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRCSAFSLDG-ILLATGDDNGE 1150
Query: 665 IRYWSINNG----SCAGV 678
IR W++++G SCA +
Sbjct: 1151 IRIWNVSDGQLLHSCAPI 1168
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 548 FQLIPAST--------SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 599
QLI T ++V C SP + +A G D + + V S+ H +
Sbjct: 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
+ ++F+ L +SS D ++VW+ + DY H TV DF ++ L S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVK--DFRLLQDSRLLSW 1061
Query: 660 DNNSEIRYWSINNG 673
+ ++ W++ G
Sbjct: 1062 SFDGTVKVWNVITG 1075
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWIT 601
T+ V C FSPD +LLA+ D LW S + ++ E+ +
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802
Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
+S ++ ++ ++ V ++D TGH +T+ DF P
Sbjct: 803 CCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D + +AT DKK +W + + + T +
Sbjct: 643 KTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD 702
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ S LAT S+D +++WD N T GH+ +V F P
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPD- 760
Query: 653 EDLLCSCDNNSEIRYW 668
+ LL SC + ++ W
Sbjct: 761 DKLLASCSADGTLKLW 776
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW T+S + + H W+ V FSP S TS
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 616 SADRTVRVWDTE 627
S D+T+R+W+T+
Sbjct: 907 SDDQTIRLWETK 918
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 555 TSKVESCHF--SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
+ +V CHF S LLATG D LW ++T+ HT + RFSP L
Sbjct: 705 SEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLL 764
Query: 613 ATSSADRTVRVWD 625
A+ SAD T+++WD
Sbjct: 765 ASCSADGTLKLWD 777
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS
Sbjct: 619 PHTDAVYHAC-FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSI 670
+AT S D+ V++W++ + + T+ HS V F S LL + ++ ++ W +
Sbjct: 678 IATCSVDKKVKIWNSMTGEL-VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 671 NNGSC 675
N C
Sbjct: 737 NQKEC 741
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 610 SRLATSSADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
++ +++SAD+T ++W D P + LR GH+ V F LL + D+N EIR
Sbjct: 1104 TKFSSTSADKTAKIWSFDLLLPLHELR---GHNGCVRCSAF-SVDSTLLATGDDNGEIRI 1159
Query: 668 WSINNG 673
W+++NG
Sbjct: 1160 WNVSNG 1165
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 14/109 (12%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWIT 601
T+ V C FSPD KLLA+ D LW S + ++ E+ +
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVK 808
Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
+S +R+ ++ ++ + ++D TGH +T+ DF P
Sbjct: 809 CCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSP 856
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V SC S D ++ DK A +W + L H + FS + LAT
Sbjct: 1094 VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD 1153
Query: 618 DRTVRVWDTENPD-------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
+ +R+W+ N + S H V L F P + L+ + I++W++
Sbjct: 1154 NGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA---GGYIKWWNV 1210
Query: 671 NNGSCAGVF 679
G + F
Sbjct: 1211 VTGESSQTF 1219
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FSPD + LATG H K ++ ES + +L+ ++I + +SP LA+ + D +
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++D L T GH+ + SL F P + LL + ++ I+ + + + + AG
Sbjct: 190 IFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTL 244
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S +SPDGK LA+G D ++ + + TLE H I + FSP L T+S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
D ++++D ++ + + T +GH++ V+++ F P
Sbjct: 227 DGYIKIYDVQHANLA-GTLSGHASWVLNVAFCP 258
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S FSPD +LL T D ++ + + TL H W+ +V F P + +SS+
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
D++V+VWD + TF H V + ++ + ++ D+
Sbjct: 269 DKSVKVWDV-GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637
K W E ++ +LE H + V S +L A+SS D +R+WD EN +++
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-QIKSID 119
Query: 638 GHSTTVMSLDFHPSKEDL 655
+L F P + L
Sbjct: 120 AGPVDAWTLAFSPDSQYL 137
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D ++RVWD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWD 305
Query: 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
E + + T TGH + ++ K+++L S + +S ++ W I G C
Sbjct: 306 VETGN-CIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKTGQC 351
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVW 624
G + +G D +W + TL HT W + +R + +S S DRT++VW
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS----GSTDRTLKVW 184
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+ E + + T GH++TV + H E + S ++ +R W I G C V
Sbjct: 185 NAETGE-CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVL 235
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
++ +G D+ +W E+ TL HT + + R+ + S D T+RVWD E
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIET 228
Query: 629 PDYSLRTFTGHSTTVMSLDF 648
L GH V + +
Sbjct: 229 GQ-CLHVLMGHVAAVRCVQY 247
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 96 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 212
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
++ + W + G C F
Sbjct: 213 GACDASAKLWDVREGMCRQTF 233
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T + C F D +++ + G D LW E+ +T HT + + +P
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 208
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
+ + D + ++WD +TFTGH + + ++ F P+
Sbjct: 209 LFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPN 248
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 195 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 661
S D T R++D D L T++ + + S+ F S LL D+
Sbjct: 255 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 67 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 126
Query: 616 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDF 648
D +++ + + ++R GH+ + F
Sbjct: 127 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 162
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
++ + W + G C F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T + C F D +++ + G D LW E+ +T HT + + +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
+ + D + ++WD +TFTGH + + ++ F P+
Sbjct: 198 LFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPN 237
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 661
S D T R++D D L T++ + + S+ F S LL D+
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 616 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDF 648
D +++ + + ++R GH+ + F
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
++ + W + G C F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T + C F D +++ + G D LW E+ +T HT + + +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
+ + D + ++WD +TFTGH + + ++ F P+
Sbjct: 198 LFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPN 237
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 661
S D T R++D D L T++ + + S+ F S LL D+
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 616 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDF 648
D +++ + + ++R GH+ + F
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
++ + W + G C F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T + C F D +++ + G D LW E+ +T HT + + +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
+ + D + ++WD +TFTGH + + ++ F P+
Sbjct: 198 LFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPN 237
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 661
S D T R++D D L T++ + + S+ F S LL D+
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 616 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDF 648
D +++ + + ++R GH+ + F
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
++ + W + G C F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T + C F D +++ + G D LW E+ +T HT + + +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
+ + D + ++WD +TFTGH + + ++ F P+
Sbjct: 198 LFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPN 237
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 661
S D T R++D D L T++ + + S+ F S LL D+
Sbjct: 244 GSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 616 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDF 648
D +++ + + ++R GH+ + F
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
P + + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L TF H + + + P E +L S + + W +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
P + + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYW 668
++CS ++ + W
Sbjct: 389 PWVICSVSEDNIXQIW 404
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKST---LEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K +W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L TF H + + + P E +L S + + W +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 589 VKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMS 645
K+ HT + DV + L S AD + + +WDT N + S T H+ V
Sbjct: 227 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 286
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINN 672
L F+P E +L + + + W + N
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRN 313
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 589 VKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMS 645
K+ HT + DV + L S AD + + +WDT N + S T H+ V
Sbjct: 225 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 284
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINN 672
L F+P E +L + + + W + N
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRN 311
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINN 672
F+P E +L + + + W + N
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRN 309
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T S +++ HT + + F+P S LAT SAD+TV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT + + S + H+ V L
Sbjct: 220 KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL 279
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINN 672
F+P E +L + + + W + N
Sbjct: 280 SFNPYSEFILATGSADKTVALWDLRN 305
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 562 HFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618
H + ++ T D+ +W S T++ L H + V F + ++S D
Sbjct: 218 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGD 275
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678
RT++VW+T ++ +RT GH + L + ++ L+ S +++ IR W I G+C V
Sbjct: 276 RTIKVWNTSTCEF-VRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRV 331
Query: 679 FK 680
+
Sbjct: 332 LE 333
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
D +++ TG D +W + + +TL H + + +RF+ + + T S DR++ VWD
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Query: 626 TENP-DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678
+P D +L R GH V +DF + + S + I+ W N +C V
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW--NTSTCEFV 289
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
+L+ +G D LW E LE H + + +RF R+ + + D ++VWD
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLV 364
Query: 628 NP--------DYSLRTFTGHSTTVMSLDF 648
LRT HS V L F
Sbjct: 365 AALDPRAPAGTLCLRTLVEHSGRVFRLQF 393
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSR 611
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+ + D+ V+VW+ N L+T GH+ + ++ P L S + + W
Sbjct: 186 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 669 SINNG 673
+N G
Sbjct: 243 DLNEG 247
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S DG+ +G D LW + T HT+ + V FS ++ + S D+T++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINN 672
+W+T HS V + F P S ++ SC + ++ W++ N
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 565 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
PD ++ + DK ++W T + L H+ +++DV S + S D
Sbjct: 51 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
T+R+WD + R F GH+ V+S+ F ++ S + I+ W+
Sbjct: 109 TLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN 156
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T + + SPDG L A+GG D +A+LW TL+ I + FSP+ L
Sbjct: 215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCA 273
Query: 615 SSADRTVRVWDTE 627
++ ++++WD E
Sbjct: 274 ATGP-SIKIWDLE 285
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 558 VESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
V FSP+ ++ + G DK +W + +K+ HT ++ V SP S A+
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D +WD N L T G + +L F P++ LC+ S I+ W +
Sbjct: 234 GKDGQAMLWDL-NEGKHLYTLDG-GDIINALCFSPNRY-WLCAATGPS-IKIWDL 284
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSR 611
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+ + D+ V+VW+ N L+T GH+ + ++ P L S + + W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 669 SINNG 673
+N G
Sbjct: 220 DLNEG 224
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S DG+ +G D LW + T HT+ + V FS ++ + S D+T++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINN 672
+W+T HS V + F P S ++ SC + ++ W++ N
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 565 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
PD ++ + DK ++W T + L H+ +++DV S + S D
Sbjct: 28 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
T+R+WD + R F GH+ V+S+ F ++ S + I+ W+
Sbjct: 86 TLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN 133
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T + + SPDG L A+GG D +A+LW TL+ I + FSP+ L
Sbjct: 192 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCA 250
Query: 615 SSADRTVRVWDTE 627
++ ++++WD E
Sbjct: 251 ATGP-SIKIWDLE 262
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 558 VESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
V FSP+ ++ + G DK +W + +K+ HT ++ V SP S A+
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 210
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D +WD N L T G + +L F P++ LC+ S I+ W +
Sbjct: 211 GKDGQAMLWDL-NEGKHLYTLDG-GDIINALCFSPNRY-WLCAATGPS-IKIWDL 261
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN 683
WD EN + + T GH+ V L + L S + IR W N+ S + N
Sbjct: 337 WDLENGEL-MYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 392
Query: 684 LMPI 687
L I
Sbjct: 393 LSAI 396
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 590 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
++TL H T IT ++F + + T + D+ +RV+D+ N + L+ +GH V +L +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+ +L S + +R W I G C VF+
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFE 200
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL-DFHPSKEDLLCSCDNNSEI 665
L +++AD ++R WD DYS R F+ H T + ++ F+ S L+ +N I
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSENQFNI 416
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
L + S DRTVRVWD + + F GH++TV LD K
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCT-HVFEGHNSTVRCLDIVEYK 215
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF----KVCNLM 685
+ P + ++L + S+ IR W++ +G+C +VC+++
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 338
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 545 FTEFQLIPASTSKVESC--HFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQ 598
E + S E C ++PDG+ LA+GG+D +W + + T +H
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288
Query: 599 WITDVRFSPSLSR-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
+ V + P S LAT ++DR +R+W+ + L HS V S+ + P ++L
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKEL 346
Query: 656 L 656
+
Sbjct: 347 I 347
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 332 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 391
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 392 SAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF----KVCNLM 685
+ P + ++L + S+ IR W++ +G+C +VC+++
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 327
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 545 FTEFQLIPASTSKVESC--HFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQ 598
E + S E C ++PDG+ LA+GG+D +W + + T +H
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277
Query: 599 WITDVRFSPSLSR-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
+ V + P S LAT ++DR +R+W+ + L HS V S+ + P ++L
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKEL 335
Query: 656 L 656
+
Sbjct: 336 I 336
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 381 SAAADETLRLW 391
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 502 LTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
LT + FV D +L +N + S D+ R ++ G T+ F S+V S
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRF---VGHQSEVYS 123
Query: 561 CHFSPDGKLLATGGHDKKAVLW-----CTESFTVKSTLEEHTQWITDVRFSPSLS----- 610
FSPD + + + G +++ LW C S K E H+ W++ VR+SP +
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPIMKSANKV 180
Query: 611 -----RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
A+ D ++VW+T ++ +R TF H + V L P+ + + + + +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKK 236
Query: 665 IRYWSINN 672
+ W I N
Sbjct: 237 LLIWDILN 244
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTV-KSTLEEHTQWITDVRFSPSLSRLATSSAD 618
D +L +G DK ++W F + L H +++D+ S +SS D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
+T+R+WD + + F GH + V S+ F P +L S EI+ W+I
Sbjct: 98 KTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI 147
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
I S +KV+ P A+ G D + +W T +F ++ T + H + + SP+
Sbjct: 173 IMKSANKVQ-----PFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGK 226
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
+AT D+ + +WD N Y R F S T+ + F+P + + D +I
Sbjct: 227 YIATGGKDKKLLIWDILNLTYPQREFDAGS-TINQIAFNPKLQWVAVGTDQGVKI 280
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 546 TEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
T FQ+ A S V SP+GK +ATGG DKK ++W + T + I
Sbjct: 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQ 260
Query: 603 VRFSPSLSRLATSSADRTVRVWD 625
+ F+P L +A + D+ V++++
Sbjct: 261 IAFNPKLQWVAVGT-DQGVKIFN 282
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF----KVCNLM 685
+ P + ++L + S+ IR W++ +G+C +VC+++
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 247
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 545 FTEFQLIPASTSKVESC--HFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQ 598
E + S E C ++PDG+ LA+GG+D +W + + T +H
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197
Query: 599 WITDVRFSPSLSR-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
+ V + P S LAT ++DR +R+W+ + L HS V S+ + P ++L
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKEL 255
Query: 656 L 656
+
Sbjct: 256 I 256
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 301 SAAADETLRLW 311
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDN 238
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNGSCAGV 678
+L SC + ++ W NG + +
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQI 92
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
+ S P + +G D LW E+ + ++ T E H ++ V F+P S A+
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN 672
DRTV+VW P+++L TG V +D++P + + + ++ I+ W
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGVFK--VCNL--------MPIILKG 691
SC + + N+ +PII+ G
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSI 670
++ WS+
Sbjct: 164 TVKVWSL 170
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN 683
WD EN + T GH+ V L + L S + IR W N+ S + N
Sbjct: 337 WDLENGELXY-TLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 392
Query: 684 LMPI 687
L I
Sbjct: 393 LSAI 396
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 590 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
++TL H T IT ++F + + T + D+ +RV+D+ N + L+ +GH V +L +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNY--VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+ +L S + +R W I G C VF+
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFE 200
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL-DFHPSKEDLLCSCDNNSEI 665
L +++AD ++R WD DYS R F+ H T + ++ F+ S L+ +N I
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSENQFNI 416
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
L + S DRTVRVWD + F GH++TV LD K
Sbjct: 176 LVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYK 215
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 70 TILASCSYDGKVLIWKEENG 89
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 217 TVLLRSYLASVSQDRTCIIWTQDN 240
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
+ S P + +G D LW E+ + ++ T E H ++ V F+P S A+
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN 672
DRTV+VW P+++L TG V +D++P + + + ++ I+ W
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGVFK--VCNL--------MPIILKG 691
SC + + N+ +PII+ G
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSI 670
++ WS+
Sbjct: 164 TVKVWSL 170
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 68 TILASCSYDGKVLIWKEENG 87
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDN 238
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
+ S P + +G D LW E+ + ++ T E H ++ V F+P S A+
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINN 672
DRTV+VW P+++L TG V +D++P + + + ++ I+ W
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGV---------FKVCN-LMPIILKG 691
SC F V + +PII+ G
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSI 670
++ WS+
Sbjct: 164 TVKVWSL 170
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
+ S P + +G D LW E+ + ++ T E H ++ V F+P S A+
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINN 672
DRTV+VW P+++L TG V +D++P + + + ++ I+ W
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGV---------FKVCN-LMPIILKG 691
SC F V + +PII+ G
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSI 670
++ WS+
Sbjct: 164 TVKVWSL 170
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D R+AT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 68 TILASCSYDGKVMIWKEENG 87
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S +A+ S DRT +W +N
Sbjct: 215 TVLLRSYMASVSQDRTCIIWTQDN 238
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S A+ S DRT +W +N
Sbjct: 215 TVLLRSYXASVSQDRTCIIWTQDN 238
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D R AT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 68 TILASCSYDGKVXIWKEENG 87
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 607
T V S ++PDG L A+ G D VL+ T E+ H+ + + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 608 SLSRLATSSADRTVRVWD 625
+++A++SAD+T+++W+
Sbjct: 250 DGTKIASASADKTIKIWN 267
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
+ S F P + +G D ++ F KST EHT+++ VR++P S A++
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209
Query: 617 ADRTVRVWDTEN-------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
D T+ +++ + D SL+ HS +V L + P + S + I+ W+
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKN-VAHSGSVFGLTWSPDGTK-IASASADKTIKIWN 267
Query: 670 INNGSCAGVFKVCNLMPI 687
+ KV +P+
Sbjct: 268 V------ATLKVEKTIPV 279
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLW-CTESFTVKST--LEEHTQWITDVRFSPSLSRL 612
+++ S FS +G L +K + + +F + T HT + V +SP RL
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 613 ATSSADRTVRVWDTENP-DYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
AT S D +V VW+ P D+ + H+ ++V S+ + E + S +S I++W++
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW--LNETTIVSAGQDSNIKFWNV 609
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + +KV S S D LL+ G + + C+ + LE H+ +++DV S + +
Sbjct: 25 PETATKVVST--SRDKTLLSWGPNPDRHSSECSYGLPDRR-LEGHSAFVSDVALSNNGNF 81
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
++S D ++R+W+ +N + F GH+ V+S+ F P ++ +N+ +R W++
Sbjct: 82 AVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDNRQIVSGGRDNA-LRVWNV- 138
Query: 672 NGSC 675
G C
Sbjct: 139 KGEC 142
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 553 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
A T V FSP D ++ +GG D +W + + + L+ HT ++T V SP S
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 611 RLATSSADRTVRVWD 625
A+S D R+WD
Sbjct: 210 LCASSDKDGVARLWD 224
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V S +G + D LW ++ + HT+ + V FSP ++ +
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNG 673
D +RVW+ + + H+ V + F PS + ++ S ++ ++ W + G
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG 186
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 558 VESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
V FSP+ + + DK +W + ++STL HT +++ V SP S A+
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 616 SADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
D V +WD YSL ++ + +L F P++ LC+ + I+ W + +
Sbjct: 580 GKDGVVLLWDLAEGKKLYSLEA----NSVIHALCFSPNRY-WLCAATEHG-IKIWDLESK 633
Query: 674 SCAGVFKV 681
S KV
Sbjct: 634 SIVEDLKV 641
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
VE S DG+ +G D + LW + HT+ + V FS ++ ++S
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 618 DRTVRVWDTENP-DYSL-RTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN 672
DRT+++W+T Y++ GH V + F P+ + + S + ++ W+++N
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V + SPDG L A+GG D +LW +LE ++ I + FSP+ L
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCA 619
Query: 615 SSADRTVRVWDTEN 628
++ + +++WD E+
Sbjct: 620 AT-EHGIKIWDLES 632
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 24/176 (13%)
Query: 560 SCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRF-SPSLSRL 612
SC + PD + L TG D+ VLW + S HT + + S + +
Sbjct: 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF 221
Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
+ S D TVR+WD ++RT+ GH + S+ F P + D+ + R + +
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRT 280
Query: 673 GSCAGVF-----KVCNLMPIILKGCFILNS--IF------NCYL---LLHRIFLNL 712
G V+ + N +PI+ F ++ +F +CY+ LL + LNL
Sbjct: 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 6/135 (4%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ + KV S ++P+ + + D + ++W + ++ H W+ + F+P+
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 611 RLATSSADRTVRVWDTENP---DYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
+A D +++ + D ++ R TGH S + P +E L + +
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 665 IRYWSINNGSCAGVF 679
W + G +F
Sbjct: 182 CVLWDVTTGQRISIF 196
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHP 650
+ H IT ++F PS L +SS D +++W D NP RT GH TV +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAIID 188
Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++L S + IR W G+ F
Sbjct: 189 RGRNVL-SASLDGTIRLWECGTGTTIHTF 216
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 613 ATSSADRTVRVWD 625
++S D T+R+W+
Sbjct: 194 LSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHP 650
+ H IT ++F PS L +SS D +++W D NP RT GH TV +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAIID 191
Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++L S + IR W G+ F
Sbjct: 192 RGRNVL-SASLDGTIRLWECGTGTTIHTF 219
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 613 ATSSADRTVRVWD 625
++S D T+R+W+
Sbjct: 197 LSASLDGTIRLWE 209
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQW 599
G + + + +V ++PD + T G D+ A +W + T K TL +
Sbjct: 39 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 600 ITDVRFSPSLSRLATSSADRTVRV--WDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLL 656
VR++P+ + A S R + + ++ EN + + +TV+SLD+HP+ L
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158
Query: 657 C-SCDNNSEI 665
SCD I
Sbjct: 159 AGSCDFKCRI 168
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDF-HPSKE 653
H I D + +RLAT S+DR+V+++D N L GH V + + HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 654 DLLCSCDNNSEIRYWSINNGS 674
++L SC + ++ W NG+
Sbjct: 72 NILASCSYDRKVIIWREENGT 92
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 568 KLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSL----SRLATSSADRT 620
K A+GG D LW E + + LE H+ W+ DV ++PS+ S +A+ S D
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 621 VRVWDTEN 628
V +W ++
Sbjct: 240 VFIWTCDD 247
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQW 599
G + + + +V ++PD + T G D+ A +W + T K TL +
Sbjct: 39 GNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 600 ITDVRFSPSLSRLATSSADRTVRV--WDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLL 656
VR++P+ + A S R + + ++ EN + + +TV+SLD+HP+ L
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158
Query: 657 C-SCDNNSEI 665
SCD I
Sbjct: 159 AGSCDFKCRI 168
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 20/146 (13%)
Query: 558 VESCHFSPDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LA 613
V S H SP L+A G K L +S + L+ H Q I V +SP LA
Sbjct: 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203
Query: 614 TSSADRTVRVWDTENPDYSLRTFTGH----STTVMSLD-FHPSKEDLLC---------SC 659
T+SAD V++WD L T H S V S + H K + LC +
Sbjct: 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263
Query: 660 DNNSEIRYWSINNG--SCAGVFKVCN 683
++ +R W+ +NG + KVCN
Sbjct: 264 GTDNRMRLWNSSNGENTLVNYGKVCN 289
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTVKSTL-------EEHTQWITDVRFSPSLSRL 612
+G+ + +GG D VL+ E+ +T K+ + H + V++ P + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 613 ATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWS 669
TSS+ D+T++VWDT N + F TV S P +K L+ +++
Sbjct: 115 FTSSSFDKTLKVWDT-NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172
Query: 670 INNGSCAGVFK 680
+ +GSC+ + +
Sbjct: 173 LKSGSCSHILQ 183
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 596 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLR--------TFTGHSTTVMSL 646
HT + D+ + P + + +A+ S D TV VW E PD L T GH+ V +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVW--EIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
+HP+ +++L S ++ I W + G+
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGAAV 167
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
GHS V L S + +R W + G
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATG 97
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSAAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
GHS V L S + +R W + G
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATG 97
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
GHS V L S + +R W + G
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATG 97
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 122 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 232
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 233 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 289
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 290 ADGQTLFAGYTDNV-IRVWQV 309
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFTGH 639
++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F GH
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 58
Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
S V L S + +R W + G
Sbjct: 59 SHIVQDCTLTADGAYAL-SASWDKTLRLWDVATG 91
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYW 668
+ L +N IR W
Sbjct: 296 ADGQTLFAGYTDNV-IRVW 313
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
GHS V L S + +R W + G
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATG 97
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSIN 671
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
GHS V L S + +R W + G
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATG 97
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 27/128 (21%)
Query: 561 CHFSPDGKLLA-----TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLAT 614
C S G L TG DK L C HT + D+ + P + + +A+
Sbjct: 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCG-----------HTAPVLDIAWCPHNDNVIAS 99
Query: 615 SSADRTVRVWDTENPDYSLR--------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
S D TV VW E PD L T GH+ V + +HP+ +++L S ++ I
Sbjct: 100 GSEDCTVMVW--EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL 157
Query: 667 YWSINNGS 674
W + G+
Sbjct: 158 VWDVGTGA 165
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 59/160 (36%), Gaps = 46/160 (28%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SPSLSRLATSSADR 619
C S ++ +G DK A +W S L+ H + D + S S ++ T+SAD+
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVY--NLQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 620 TVRVW----------------------------------------DTENPDYSLRTFTGH 639
T+++W D D LRT+ GH
Sbjct: 166 TIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDV-LRTYEGH 224
Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+ V + P+ + + SC + +R WS NGS V
Sbjct: 225 ESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVI 262
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
V T E H ++ ++ P+ + + DRTVR+W EN + T + ++ S+D
Sbjct: 217 VLRTYEGHESFVYCIKLLPN-GDIVSCGEDRTVRIWSKENGSLK-QVITLPAISIWSVDC 274
Query: 649 HPSKEDLLCSCDN 661
+ + ++ S DN
Sbjct: 275 XSNGDIIVGSSDN 287
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
L H + +T V+++ L + S D + VW + N + L T GH+ T+ S+D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT 86
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+ + + S I+ W ++NG C +K
Sbjct: 87 KYCVTGSADYS-IKLWDVSNGQCVATWK 113
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
++ +G LL + D A +W + + TL+ HT I + T SAD +++
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 623 VWDTEN 628
+WD N
Sbjct: 100 LWDVSN 105
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLW-CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618
+S GK + G D K + + ++ +++ H + I+D++FSP L+ TSS D
Sbjct: 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATS 615
+ SC PDG L GG +W + T +K+ L + SP +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
+D + VWD N +R F GH+ +D L +N+ +R W + G
Sbjct: 160 CSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREG 215
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 555 TSKVESCH---FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
TS +C+ SPD K+ + D +W + T+ + HT + + S ++
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 612 LATSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
L T D TVR WD E FT + + SL + P+ E L
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWL 239
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 299
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 300 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 331
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 298
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 299 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 298
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 299 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 624
DG +GG D +W V + H+ + V P + S D + +W
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
DT P + R F T S+ +HP K+D D + +I N
Sbjct: 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 596 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK 652
H +T F+P L ATSS D TV++WD N S H V + F+P+
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 653 EDLLCSCDNNSEIRYWS 669
L + D +EIR +S
Sbjct: 262 STKLLTTDQRNEIRVYS 278
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 596 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK 652
H +T F+P L ATSS D TV++WD N S H V + F+P+
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 653 EDLLCSCDNNSEIRYWS 669
L + D +EIR +S
Sbjct: 263 STKLLTTDQRNEIRVYS 279
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 17/158 (10%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDG------------KLLATGGHDKKAVLWCTESFTV 589
G F+L S + + + S DG K + G V TE T
Sbjct: 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-TP 239
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
L H I+ + F+ + L ++S D T+R+W N + S F GHS +++S +
Sbjct: 240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASW- 297
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPI 687
+D + SC + +R WS+ + + + +PI
Sbjct: 298 -VGDDKVISCSMDGSVRLWSLKQNTLLA-LSIVDGVPI 333
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 190
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 149
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 154
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
+ N S+ F+ HS++V ++ F+ ++++L S NN EI W +N
Sbjct: 98 EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 598 QWITDVRFSPSLS-RLATSSA---DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK 652
Q ++ V + P S R+AT++ D ++ +WD N + L+T GH ++SLD+
Sbjct: 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 653 EDLLCSCDNNSEIRYW 668
E LL S ++ + W
Sbjct: 275 EHLLLSSGRDNTVLLW 290
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADR 619
CH D LL + G D +LW ES S W +F+P L A +S D
Sbjct: 271 CH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 620 TVRVWDTEN 628
+ V +N
Sbjct: 329 KIEVQTLQN 337
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+AT D + +WD + H + + FHPS + L +C + + +W
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654
EH ++ V S ++ + S D ++VWD L ++ H+ V + P K+
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 655 LLCSCDNNSEIRYW 668
+ SC ++ I W
Sbjct: 184 VFLSCSEDNRILLW 197
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 611
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 612 LATSSADRTVRVWDT 626
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 611
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 612 LATSSADRTVRVWDT 626
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 600 ITDVRFSPSLSRLAT---SSADRTVRVWDTE---------NPDYSLRTFTG---HSTTVM 644
I V+FSP S LA S++ + +++TE P +S + G HS+ VM
Sbjct: 246 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 305
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSI 670
SL F+ S E LCS + ++R+W +
Sbjct: 306 SLSFNDSGE-TLCSAGWDGKLRFWDV 330
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKA----VLWCTE-----------SFTVKSTLEE--H 596
+++ + S FSP G LLA HD + L+ TE + + +++L E H
Sbjct: 242 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 300
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
+ W+ + F+ S L ++ D +R WD + +
Sbjct: 301 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 334
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 600 ITDVRFSPSLSRLAT---SSADRTVRVWDTE---------NPDYSLRTFTG---HSTTVM 644
I V+FSP S LA S++ + +++TE P +S + G HS+ VM
Sbjct: 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSI 670
SL F+ S E LCS + ++R+W +
Sbjct: 296 SLSFNDSGE-TLCSAGWDGKLRFWDV 320
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKA----VLWCTE-----------SFTVKSTLEE--HT 597
++ + S FSP G LLA HD + L+ TE + + +++L E H+
Sbjct: 233 SNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
W+ + F+ S L ++ D +R WD + +
Sbjct: 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 601 TDVRFSPSLSRLATSSADRTVRV---------WDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T VR+SP+ + A S R + V W +++ LR+ T++SLD+HP+
Sbjct: 104 TFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS------TILSLDWHPN 157
Query: 652 KEDLLCSC 659
L C
Sbjct: 158 NVLLAAGC 165
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+S+V + DG LA+GG+D +W S K T H + V + P S L
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276
Query: 615 S---SADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSC---DNNSEIRY 667
+ + D+ + W N R T + + V SL + P ++++ + DNN I
Sbjct: 277 TGGGTMDKQIHFW---NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI-- 331
Query: 668 WS 669
WS
Sbjct: 332 WS 333
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFH 649
TL+ H+ + + + +LA+ D V++WD + P + T T H+ V ++ +
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF---TKTNHNAAVKAVAWC 268
Query: 650 PSKEDLLCSCDN--NSEIRYWSINNGS 674
P + +LL + + +I +W+ G+
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGA 295
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 549 QLIPAS----TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604
Q IP + T V +S DG + T DK A +W S + +H + +
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAIQIAQHDAPVKTIH 134
Query: 605 F--SPSLSRLATSSADRTVRVWDTE 627
+ +P+ S + T S D+T++ WDT
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTR 159
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 563 FSPD---GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
FSP G L G W + T+ + HT + DV +S S++ T+S
Sbjct: 47 FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 618 DRTVRVWD 625
D+T ++WD
Sbjct: 107 DKTAKMWD 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,779,436
Number of Sequences: 62578
Number of extensions: 681461
Number of successful extensions: 2067
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1414
Number of HSP's gapped (non-prelim): 413
length of query: 743
length of database: 14,973,337
effective HSP length: 106
effective length of query: 637
effective length of database: 8,340,069
effective search space: 5312623953
effective search space used: 5312623953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)