Query 004594
Match_columns 743
No_of_seqs 612 out of 3504
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 17:46:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004594.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1896-1900//hhsearch_pdb/004594hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 243.4 34.0 246 474-739 122-410 (410)
2 1vyh_C Platelet-activating fac 1.0 1 1 241.9 33.4 227 477-739 106-368 (410)
3 4gqb_B Methylosome protein 50; 1.0 1 1 240.2 33.2 217 507-739 94-330 (344)
4 2ynn_A Coatomer subunit beta'; 1.0 1 1 238.9 34.4 228 478-739 12-258 (304)
5 3dm0_A Maltose-binding peripla 1.0 1 1 235.8 33.5 215 503-739 439-692 (694)
6 1got_B GT-beta; complex (GTP-b 1.0 1 1 235.2 35.2 246 474-737 69-340 (340)
7 2pbi_B Guanine nucleotide-bind 1.0 1 1 234.8 35.4 220 503-737 115-354 (354)
8 3iz6_a 40S ribosomal protein R 1.0 1 1 234.3 27.7 253 474-739 80-374 (380)
9 3ow8_A WD repeat-containing pr 1.0 1 1 231.7 33.6 215 505-740 91-321 (321)
10 1nr0_A Actin interacting prote 1.0 1 1 231.4 34.0 230 505-740 250-611 (611)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=243.42 Aligned_cols=246 Identities=17% Similarity=0.241 Sum_probs=194.0
Q ss_pred CCCCCCCCCEEEEEECCCCCC---CCCCC-----CCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 224789982189891589953---32368-----6446799789982179948998269999987753422223778401
Q 004594 474 LQHNGASSKSLLMFGSDGMGS---LTSAP-----NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~i~fs~d~~~~---l~~~~-----~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
+..+++.+..+..|....... +.... -.+.+.++++++|+.|++|++|+... .
T Consensus 122 ~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-------------------~ 182 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-------------------F 182 (410)
T ss_dssp EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-------------------S
T ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-------------------C
T ss_conf 899993898599998999937788816678687899859999999991898199995899-------------------8
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 24798407999968999948999999996899299997799828899704798779999959999899996999199998
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWD 625 (743)
..+..+.+|...|.+++|+|++.+|++|+.|++|++||++++.++.++.+|...|.+++|+|++.+|++++.|++|++||
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf 26699828999778999967999999996899699998999948999927886289999989999999991899099998
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEECCC-------------------CEEEEEEECCCCEEEEECCCCEEEEEEECCC---
Q ss_conf 879982489982489986999990699-------------------9099998179929999889990779985257---
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPSK-------------------EDLLCSCDNNSEIRYWSINNGSCAGVFKVCN--- 683 (743)
Q Consensus 626 i~~~~~~l~~l~gh~~~V~sl~fsp~g-------------------~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~--- 683 (743)
++++. +...+.+|...|.+++|+|++ ..++++++.|+.|++||++++.++..+.+|.
T Consensus 263 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v 341 (410)
T 1vyh_C 263 VATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341 (410)
T ss_dssp TTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred CCCCC-EEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 98974-36673378745899998586554310121255555667888899999389849999889996699997788858
Q ss_pred -CEEEECCCCEEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf -124630799999996598499994631------------13898621899989999699909996799
Q 004594 684 -LMPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 684 -~i~~s~~g~~L~sgs~Dg~I~i~~~~i------------~~l~v~~~~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
.+.|++++.++++++.|++|++|+... .+.++.+.++...+++|+.|++|++|+.+
T Consensus 342 ~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 342 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 999994998999999597929999899990689984777868999982899999999279948997379
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=241.88 Aligned_cols=227 Identities=19% Similarity=0.280 Sum_probs=197.3
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 78998218989158995332368644679978998217994899826999998775342222377840124798407999
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.....+.++.|+|++ .++++|+.|++|++|+...+ .....+.+|.+
T Consensus 106 gh~~~V~~~~~~p~~---------------~~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~~ 151 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVF---------------SVMVSASEDATIKVWDYETG-------------------DFERTLKGHTD 151 (410)
T ss_dssp CCSSCEEEEEECSSS---------------SEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSS
T ss_pred CCCCCEEEEEECCCC---------------CEEEEEECCCEEEEEECCCC-------------------CEEEEEECCCC
T ss_conf 667768999996999---------------98999938985999989999-------------------37788816678
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE
Q ss_conf 96899994899999999689929999779982889970479877999995999989999699919999887998248998
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 557 ~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l 636 (743)
.|.+++|+|++++|++|+.|++|++||+.+.+++.++.+|...|.+++|+|++.+|++++.|++|++||++++. ++..+
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~ 230 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTF 230 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC-EEEEE
T ss_conf 68789985999999999189819999589982669982899977899996799999999689969999899994-89999
Q ss_pred ECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCC----EEEECC--------------------CC
Q ss_conf 248998699999069990999981799299998899907799852571----246307--------------------99
Q 004594 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILK--------------------GC 692 (743)
Q Consensus 637 ~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~--------------------g~ 692 (743)
.+|...|.++.|++++. ++++|+.|+.|++||++++++...+..|.. +.|+|+ +.
T Consensus 231 ~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp ECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred ECCCCCEEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 27886289999989999-99999189909999898974366733787458999985865543101212555556678888
Q ss_pred EEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf 999996598499994631------------13898621899989999699909996799
Q 004594 693 FILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 693 ~L~sgs~Dg~I~i~~~~i------------~~l~v~~~~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
++++++.|+.|++|+... .+..+.+.+++.++++++.|++|++||-.
T Consensus 310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 99999389849999889996699997788858999994998999999597929999899
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=240.19 Aligned_cols=217 Identities=18% Similarity=0.185 Sum_probs=179.6
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 78998217994899826999998775342222377840124798407999968999948999999996899299997799
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s 586 (743)
+.+++|+.|++|++|+...+. ........+.+|.+.|++++|+|++++|++|+.|++|++||+++
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~---------------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENE---------------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTS---------------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEEECCCEEEEEECCCCC---------------CEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 829999897989999653887---------------43586013467899789999989989999994989399999999
Q ss_pred CEEEEEECCCCCCEEEEEECCCC-CEEEEEECCCEEEEEECCCCCEEEEEE--ECCCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf 82889970479877999995999-989999699919999887998248998--248998699999069990999981799
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~iafspd~-~~LaSgs~DgtIriWDi~~~~~~l~~l--~gh~~~V~sl~fsp~g~~llaSgs~Dg 663 (743)
++++.++.+|...|++++|++++ .+|++++.|++|++||++++.. +..+ ..+...+.+++|+|++..++++++.|+
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CCEEEEECCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCE-EEEEECCEEECCCEEEEECCCCCCCEEEECCCC
T ss_conf 9699997576885578886589997401103443551023445520-011101000012123566179996058861587
Q ss_pred CEEEEECCCCEEEEEEECCCC----EEEECCC-CEEEEEECCCEEEEEECCC-----------CEEEEEECCCC-CEEEE
Q ss_conf 299998899907799852571----2463079-9999996598499994631-----------13898621899-98999
Q 004594 664 EIRYWSINNGSCAGVFKVCNL----MPIILKG-CFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNP-DEIST 726 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~~~~----i~~s~~g-~~L~sgs~Dg~I~i~~~~i-----------~~l~v~~~~~~-~~iaS 726 (743)
.|++||+++++++..+.+|.. ++|+|++ .+|++++.|++|++|+... .+.++.+.++. ..+++
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEE
T ss_conf 18989899995989983788998899992699909999938994999999999699972889977899991799969999
Q ss_pred EECCCCEEEECCC
Q ss_conf 9699909996799
Q 004594 727 SSWKDSCCSHREL 739 (743)
Q Consensus 727 gs~Dg~V~iWd~~ 739 (743)
+|+|++|++|+-.
T Consensus 318 ~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 318 VGWDHQVVHHVVP 330 (344)
T ss_dssp EETTSCEEEEECC
T ss_pred ECCCCEEEEEECC
T ss_conf 9379959999899
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=1.00 E-value=1 Score=238.93 Aligned_cols=228 Identities=15% Similarity=0.177 Sum_probs=163.5
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 89982189891589953323686446799789982179948998269999987753422223778401247984079999
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
....+..+.|+|++ .++++++.|+.|++|+...+ ..+..+..|...
T Consensus 12 h~~~V~~~~fsp~~---------------~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~ 57 (304)
T 2ynn_A 12 RSDRVKGIDFHPTE---------------PWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETP 57 (304)
T ss_dssp ECSCEEEEEECSSS---------------SEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSC
T ss_pred CCCCEEEEEECCCC---------------CEEEEECCCCCEEEEECCCC-------------------CEEEEEECCCCC
T ss_conf 88856899989999---------------87999827996999878888-------------------266776056774
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE
Q ss_conf 68999948999999996899299997799828899704798779999959999899996999199998879982489982
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~ 637 (743)
|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++++..+...+.
T Consensus 58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred EEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCHHHHHC
T ss_conf 88999968999899988999799999999967899807998089999959999999987998199998999922310105
Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC-----CEEEE--CCCCEEEEEECCCEEEEEECCC
Q ss_conf 4899869999906999099998179929999889990779985257-----12463--0799999996598499994631
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-----LMPII--LKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 638 gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~-----~i~~s--~~g~~L~sgs~Dg~I~i~~~~i 710 (743)
+|...|.+++|+|.+..++++++.|+.|++||++.+.+...+..+. .+.+. +++.++++++.|++|++|+...
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred CCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCEEEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 66895799998889999899991898399998999976633216874757789999869999999986999199996789
Q ss_pred ------------CEEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf ------------13898621899989999699909996799
Q 004594 711 ------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 711 ------------~~l~v~~~~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
.+..+.+.++...+++++.||+|++||..
T Consensus 218 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 86024647988888999988999989999389959999899
No 5
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=235.82 Aligned_cols=215 Identities=18% Similarity=0.243 Sum_probs=175.5
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 67997899821799489982699999877534222237784012479840799996899994899999999689929999
Q 004594 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IW 582 (743)
.+.++++++|+.|+.|++|+...+ .....+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLAAG-------------------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCCCEEEEEECCCCEEEEECCCC-------------------CCEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 799999999808992899979999-------------------5136886799988999990899989999488979999
Q ss_pred ECCCCEEEEEE---CCCCCCEEEEEECCCC--CEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf 77998288997---0479877999995999--989999699919999887998248998248998699999069990999
Q 004594 583 CTESFTVKSTL---EEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 583 d~~s~~~~~~l---~~H~~~V~~iafspd~--~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~lla 657 (743)
|+......... .+|...|.|++|+|++ ..+++++.|++|++||++... ++..+.+|.+.|++++|+|++. +++
T Consensus 500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~-~l~ 577 (694)
T 3dm0_A 500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGS-LCA 577 (694)
T ss_dssp CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred ECCCCCCEEECCCCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCC-EEEEECCCCCCEEEEEEECCCC-EEE
T ss_conf 78998540430377888786799999179886559999689859999899992-7899867888888999918989-899
Q ss_pred EEECCCCEEEEECCCCEEEEEEECCC---CEEEECCCCEEEEEECCCEEEEEECCCC-----------------------
Q ss_conf 98179929999889990779985257---1246307999999965984999946311-----------------------
Q 004594 658 SCDNNSEIRYWSINNGSCAGVFKVCN---LMPIILKGCFILNSIFNCYLLLHRIFLN----------------------- 711 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~~~---~i~~s~~g~~L~sgs~Dg~I~i~~~~i~----------------------- 711 (743)
+++.|+.|++||+++++++..+..+. .++|++++.+++++.. +.|++|+....
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA 656 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC------------
T ss_pred EEECCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEECC-CCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf 995899499998899956788338994789998599868999769-9789998999987332002456532002456645
Q ss_pred --------EEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf --------3898621899989999699909996799
Q 004594 712 --------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 712 --------~l~v~~~~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
+.++.+.+++..|++|+.||+|++|+-.
T Consensus 657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCEEEEEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 677404775148986899989997589849998535
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=235.23 Aligned_cols=246 Identities=15% Similarity=0.247 Sum_probs=193.9
Q ss_pred CCCCCCCCCEEEEEECCCCCCC---C-----CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 2247899821898915899533---2-----3686446799789982179948998269999987753422223778401
Q 004594 474 LQHNGASSKSLLMFGSDGMGSL---T-----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~i~fs~d~~~~l---~-----~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
+...++.+..+..|.......+ . .....+.+.++++++|+.|+.+++|+..... ...
T Consensus 69 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---------------~~~ 133 (340)
T 1got_B 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE---------------GNV 133 (340)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS---------------BSC
T ss_pred EEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC---------------CCC
T ss_conf 99998188968999899987433760388618899999999999998089819999796688---------------861
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 24798407999968999948999999996899299997799828899704798779999959999899996999199998
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWD 625 (743)
.....+.+|.+.|.|+.|++++. +++++.|++|++||+++++.+.++.+|...|.+++|+|++.++++++.|++|++||
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCCEEEEEECCCCC-EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 36778448776389999879996-99998999299998999918899769998668999989999999993899399977
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECC------CCEEEECCCCEEEEEEC
Q ss_conf 879982489982489986999990699909999817992999988999077998525------71246307999999965
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC------NLMPIILKGCFILNSIF 699 (743)
Q Consensus 626 i~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~------~~i~~s~~g~~L~sgs~ 699 (743)
++++. ++..+.+|...|.+++|+|++. +|++++.|+.|++||++.++.+..+... ..+.|++++.++++|+.
T Consensus 213 ~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 290 (340)
T 1got_B 213 VREGM-CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp TTTCS-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCCCE-EEEEECCCCCCEEEEEECCCCC-EEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECC
T ss_conf 89981-6789748768779999949999-899974898199998899918999726885241699999899999999779
Q ss_pred CCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCCEEEEC
Q ss_conf 98499994631------------138986218999899996999099967
Q 004594 700 NCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 700 Dg~I~i~~~~i------------~~l~v~~~~~~~~iaSgs~Dg~V~iWd 737 (743)
|+.|++|+... .+.++.+.+++..+++|+.|++|++||
T Consensus 291 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 99099988413838658505778488999829999899972886189559
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=234.76 Aligned_cols=220 Identities=15% Similarity=0.271 Sum_probs=180.1
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 67997899821799489982699999877534222237784012479840799996899994899999999689929999
Q 004594 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IW 582 (743)
.+.+.++++|+.|+.+++|....... .........+.+|.+.|.+++|+|++..|++++.|++|++|
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~-------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lw 181 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKN-------------ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 181 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTT-------------CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEECCCCEEEEEEECCCC-------------CCCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 89999799713899889999742566-------------55333311630667847899996899999999189958997
Q ss_pred ECCCCEEEEEECCCCCCEEEEEECCC--CCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEE
Q ss_conf 77998288997047987799999599--9989999699919999887998248998248998699999069990999981
Q 004594 583 CTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 583 d~~s~~~~~~l~~H~~~V~~iafspd--~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs 660 (743)
|+++++++..+.+|...|.+++|+|+ +.+|++++.|++|++||++++. ++..+.+|...|.+++|+|++. ++++++
T Consensus 182 d~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l~s~s 259 (354)
T 2pbi_B 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGD-AFASGS 259 (354)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred ECCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCC-EEEEECCCCCCEEEEEEECCCC-EEEEEE
T ss_conf 67778199999278998699998757999999999479959999888992-7798358878817999958999-899996
Q ss_pred CCCCEEEEECCCCEEEEEEECC------CCEEEECCCCEEEEEECCCEEEEEECC------------CCEEEEEECCCCC
Q ss_conf 7992999988999077998525------712463079999999659849999463------------1138986218999
Q 004594 661 NNSEIRYWSINNGSCAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF------------LNLLSVSEWCNPD 722 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~~v~~~~~~------~~i~~s~~g~~L~sgs~Dg~I~i~~~~------------i~~l~v~~~~~~~ 722 (743)
.|++|++||++.++++..+..+ ..+.|++++.++++++.|+.|++|+.. ..+.++.+.+++.
T Consensus 260 ~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 339 (354)
T 2pbi_B 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGT 339 (354)
T ss_dssp TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 99819999888996788874787403455999947999999997899299998988955779987899578999989999
Q ss_pred EEEEEECCCCEEEEC
Q ss_conf 899996999099967
Q 004594 723 EISTSSWKDSCCSHR 737 (743)
Q Consensus 723 ~iaSgs~Dg~V~iWd 737 (743)
.++++++|++|++|+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEECCCCCEEECC
T ss_conf 999982888889619
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=234.34 Aligned_cols=253 Identities=18% Similarity=0.277 Sum_probs=195.9
Q ss_pred CCCCCCCCCEEEEEECCCCCCC--------CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 2247899821898915899533--------23686446799789982179948998269999987753422223778401
Q 004594 474 LQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~i~fs~d~~~~l--------~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
+..+++.+..+..|........ ......+.+.++++++|+.|+.+++|+........ ...
T Consensus 80 ~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~------------~~~ 147 (380)
T 3iz6_a 80 WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD------------GNM 147 (380)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC------------CSS
T ss_pred EEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCC------------CCC
T ss_conf 89999189809998788886014885599878999998999989995479858999897775556------------773
Q ss_pred EEEEEEECCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCEEEEEE-----CCCCCCEEEEEECC-CCCEEEEEECC
Q ss_conf 247984079999689999489-999999968992999977998288997-----04798779999959-99989999699
Q 004594 546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL-----EEHTQWITDVRFSP-SLSRLATSSAD 618 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspd-g~~Lasgs~Dg~V~IWd~~s~~~~~~l-----~~H~~~V~~iafsp-d~~~LaSgs~D 618 (743)
.....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ ++.+|++|+.|
T Consensus 148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227 (380)
T ss_dssp TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred CCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECC
T ss_conf 31264068975468999964899789997799819999867795789960566788756769999206999989999789
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-----------CCEEE
Q ss_conf 9199998879982489982489986999990699909999817992999988999077998525-----------71246
Q 004594 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-----------NLMPI 687 (743)
Q Consensus 619 gtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~-----------~~i~~ 687 (743)
++|++||++....++..+.+|.+.|.+++|+|++. +|++++.|++|++||+++++++..+..+ ..++|
T Consensus 228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf 86999978889734699887488757999916999-69998389969999888996889861565556655686389998
Q ss_pred ECCCCEEEEEECCCEEEEEECCC----------------CEEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf 30799999996598499994631----------------13898621899989999699909996799
Q 004594 688 ILKGCFILNSIFNCYLLLHRIFL----------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 688 s~~g~~L~sgs~Dg~I~i~~~~i----------------~~l~v~~~~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
+++|.++++|+.|+.|++|+... .+.++.+.+++..+++|++|++|++|+-.
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 89999899997999799998877815789702367777845799989999989996089988999537
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=231.68 Aligned_cols=215 Identities=20% Similarity=0.264 Sum_probs=183.6
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 99789982179948998269999987753422223778401247984079999689999489999999968992999977
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~ 584 (743)
...++++++.|++|++|+...+ ..+..+..|...|.+++|+|++++|++|+.|+.|++|++
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~-------------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENG-------------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred CCCEEEEEECCCCEEEEECCCC-------------------CEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEC
T ss_conf 9998999937980999978999-------------------798999379856799999999998999838991999986
Q ss_pred CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf 99828899704798779999959999899996999199998879982489982489986999990699909999817992
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 585 ~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~ 664 (743)
++++....+..|...|.+++|+|++.+|++++.|+.|++||++++. ++..+.+|...|.+++|+|++. +|++++.|+.
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~ 229 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGY 229 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSC-EEEEECTTSC
T ss_pred CCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCC-EEEEECCCCCCEEEEEECCCCC-EEEEECCCCE
T ss_conf 7994667743899429999998999999999289839999999990-9999802589601899948999-8999909980
Q ss_pred EEEEECCCCEEEEEEECCCC----EEEECCCCEEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEEE
Q ss_conf 99998899907799852571----24630799999996598499994631------------138986218999899996
Q 004594 665 IRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSS 728 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~I~i~~~~i------------~~l~v~~~~~~~~iaSgs 728 (743)
|++||++.++++..+.+|.. +.|+|++.+|++++.|++|++|+... .+..+.+.+++..+++++
T Consensus 230 i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 230 IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf 99987899632589868888268999979999899981898099994999888889837877389999989999999975
Q ss_pred CCCCEEEECCCC
Q ss_conf 999099967996
Q 004594 729 WKDSCCSHRELY 740 (743)
Q Consensus 729 ~Dg~V~iWd~~~ 740 (743)
.|++|++||..+
T Consensus 310 ~d~~i~vwd~p~ 321 (321)
T 3ow8_A 310 DDQEIHIYDCPI 321 (321)
T ss_dssp TTCCEEEEECC-
T ss_pred CCCEEEEEECCC
T ss_conf 898089995779
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=231.40 Aligned_cols=230 Identities=13% Similarity=0.097 Sum_probs=167.2
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCC---------------------------CCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 9978998217994899826999998---------------------------7753422223778401247984079999
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADP---------------------------RDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 505 ~~~~lasGs~D~~V~iw~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
.++++++++.|++|++|+...+... .+...++|+...+ .....+.+|...
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~gh~~~ 326 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG---SIDQVRYGHNKA 326 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT---EEEEEECCCSSC
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCC---CCCEEECCCCCC
T ss_conf 99999999089809999688870134404788766406899973887999958996899968899---744698378888
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE-C------------------------------------------
Q ss_conf 689999489999999968992999977998288997-0------------------------------------------
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-E------------------------------------------ 594 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l-~------------------------------------------ 594 (743)
|++++|+|++++|++++.|++|++||+.++.....+ .
T Consensus 327 v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~ 406 (611)
T 1nr0_A 327 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV 406 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred EEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEE
T ss_conf 89999918999899995898499997887925632166776507899987899699998489668954688543565212
Q ss_pred ---------------------------------------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE-EE
Q ss_conf ---------------------------------------47987799999599998999969991999988799824-89
Q 004594 595 ---------------------------------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LR 634 (743)
Q Consensus 595 ---------------------------------------~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~-l~ 634 (743)
.|...+.+++|+|++.+|++++.|++|++||+...... +.
T Consensus 407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~ 486 (611)
T 1nr0_A 407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 486 (611)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 00148997079980799699999676399984894346406889549999289989999689973999994599222410
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCC-CEEEEE--EECC----CCEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 98248998699999069990999981799299998899-907799--8525----7124630799999996598499994
Q 004594 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV--FKVC----NLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 635 ~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~t-g~~v~~--~~~~----~~i~~s~~g~~L~sgs~Dg~I~i~~ 707 (743)
. .+|...|.+++|+|++. +|++++.|++|++||+.+ ++++.. +..| ..++|+|++.+|++++.|++|++|+
T Consensus 487 ~-~~h~~~v~~v~fspdg~-~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 487 T-IVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp E-EECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred C-CCCCCCEEEEEECCCCC-EEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 1-57788607999989999-899994899899988577872232102640466425899899899799997997299997
Q ss_pred CCC---------------CEEEEEECCCCCEEEEEECCCCEEEECCCC
Q ss_conf 631---------------138986218999899996999099967996
Q 004594 708 IFL---------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 708 ~~i---------------~~l~v~~~~~~~~iaSgs~Dg~V~iWd~~~ 740 (743)
... .+.++.+.++. .+++++.|++|++|+-.|
T Consensus 565 ~~~~~~~~~~~~~~h~~~~v~~v~fs~d~-~l~s~~~D~~i~lW~~~~ 611 (611)
T 1nr0_A 565 MNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWNVPF 611 (611)
T ss_dssp TTCTTSCCEEETTSSTTSCEEEEEEEETT-EEEEEETTSCEEEEECCC
T ss_pred CCCCCCCCCHHHCCCCCCCEEEEEECCCC-EEEEECCCCCEEEEECCC
T ss_conf 88755563264446765671189985899-799952887789984449
Done!