BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004595
(743 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WQ57|AUXI2_ARATH Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1
SV=1
Length = 891
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 67/84 (79%)
Query: 647 IDVQIRKWSNGKEGNIRSLLSTLQYILWPASGWKPVPLVDIIEGNAVKRSYQKALLCLHP 706
+DV+IR+W GKEGN+R+LLSTLQY+LWP GW+PV L D+I G +VK+ Y+KA LC+HP
Sbjct: 796 LDVEIRRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGASVKKVYRKATLCIHP 855
Query: 707 DKLQQKGATCQQTYIAEKVLIFCR 730
DK+QQKGA QQ YIAEKV +
Sbjct: 856 DKVQQKGANLQQKYIAEKVFDMLK 879
>sp|Q9SU08|AUXI1_ARATH Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1
SV=2
Length = 904
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 66/84 (78%)
Query: 647 IDVQIRKWSNGKEGNIRSLLSTLQYILWPASGWKPVPLVDIIEGNAVKRSYQKALLCLHP 706
+DV+I++W GKEGN+R+LLSTLQY+LWP GW+PV L D+I +VK+ Y+KA LC+HP
Sbjct: 809 LDVEIKRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAASVKKVYRKATLCIHP 868
Query: 707 DKLQQKGATCQQTYIAEKVLIFCR 730
DK+QQKGA QQ YIAEKV +
Sbjct: 869 DKVQQKGANLQQKYIAEKVFDMLK 892
>sp|Q27974|AUXI_BOVIN Putative tyrosine-protein phosphatase auxilin OS=Bos taurus
GN=DNAJC6 PE=1 SV=1
Length = 910
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 649 VQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQKALLCLHPD 707
++I +W GKE NIR+LLST+ +LW + WKPV + D++ VK+ Y+KA+L +HPD
Sbjct: 817 LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPD 876
Query: 708 K 708
K
Sbjct: 877 K 877
>sp|O13773|UCP7_SCHPO UBA domain-containing protein 7 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ucp7 PE=4 SV=1
Length = 697
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 651 IRKWSNGKEGNIRSLLSTLQYILWPASGWKPVPLVDIIEGNAVKRSYQKALLCLHPDKLQ 710
+ KW GKE N+R+LL++L ILWP W+ V L +++ VK +Y KA+ +HPDKL
Sbjct: 607 VNKWKEGKESNLRALLASLDTILWPECRWQKVSLSELVLPKKVKIAYMKAVSRVHPDKLP 666
Query: 711 QKGATCQQTYIAE 723
Q+ + Q IAE
Sbjct: 667 QQTSVEHQ-LIAE 678
>sp|O75061|AUXI_HUMAN Putative tyrosine-protein phosphatase auxilin OS=Homo sapiens
GN=DNAJC6 PE=1 SV=3
Length = 913
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 649 VQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQKALLCLHPD 707
++I +W GKE NIR+LLST+ +LW + WKPV + D++ VK+ Y+KA+L +HPD
Sbjct: 820 LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPD 879
Query: 708 K 708
K
Sbjct: 880 K 880
>sp|Q80TZ3|AUXI_MOUSE Putative tyrosine-protein phosphatase auxilin OS=Mus musculus
GN=Dnajc6 PE=2 SV=2
Length = 938
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 649 VQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQKALLCLHPD 707
++I +W GKE NIR+LLST+ +LW + WKPV + D++ VK+ Y++A+L +HPD
Sbjct: 845 LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPD 904
Query: 708 K 708
K
Sbjct: 905 K 905
>sp|P97874|GAK_RAT Cyclin-G-associated kinase OS=Rattus norvegicus GN=Gak PE=2 SV=1
Length = 1305
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 628 TKDDNKLRKLGNDPQEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVD 686
T + + ++L D F+ +++ W GKE NIR+LLSTL +LW S W PV + D
Sbjct: 1194 TMAEMRKQELARDTDPFK---LKLLDWIEGKERNIRALLSTLHTVLWDGESRWTPVSMAD 1250
Query: 687 IIEGNAVKRSYQKALLCLHPDK 708
++ VK+ Y++A+L +HPDK
Sbjct: 1251 LVTPEQVKKQYRRAVLVVHPDK 1272
>sp|Q99KY4|GAK_MOUSE Cyclin-G-associated kinase OS=Mus musculus GN=Gak PE=1 SV=2
Length = 1305
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 639 NDPQEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSY 697
DP + + +D W GKE NIR+LLSTL +LW S W PV + D++ VK+ Y
Sbjct: 1207 TDPLKLKLLD-----WIEGKERNIRALLSTLHTVLWDGESRWTPVSMADLVTPEQVKKQY 1261
Query: 698 QKALLCLHPDK 708
++A+L +HPDK
Sbjct: 1262 RRAVLVVHPDK 1272
>sp|O14976|GAK_HUMAN Cyclin-G-associated kinase OS=Homo sapiens GN=GAK PE=1 SV=2
Length = 1311
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 639 NDPQEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSY 697
DP + + +D W GKE NIR+LLSTL +LW S W PV + D++ VK+ Y
Sbjct: 1213 TDPLKLKLLD-----WIEGKERNIRALLSTLHTVLWDGESRWTPVGMADLVAPEQVKKHY 1267
Query: 698 QKALLCLHPDK 708
++A+L +HPDK
Sbjct: 1268 RRAVLAVHPDK 1278
>sp|Q06677|SWA2_YEAST Auxilin-like clathrin uncoating factor SWA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SWA2 PE=1
SV=1
Length = 668
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 650 QIRKWSNGKEGNIRSLLSTLQYIL-WPASGWKPVPLVDIIEGNAVKRSYQKALLCLHPDK 708
+I W +GK+ +IR LL+ L +L W WK V + D++ VK +Y KA+ HPDK
Sbjct: 577 KISSWKDGKDDDIRHLLANLSSLLTW--CNWKDVSMQDLVMPKRVKITYMKAVAKTHPDK 634
Query: 709 LQQKGATCQQTYIAEKVL 726
+ + + + IAE +
Sbjct: 635 IPE-SLSLENKMIAENIF 651
>sp|Q8CNL6|ILVD_STAES Dihydroxy-acid dehydratase OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=ilvD PE=3 SV=1
Length = 562
Score = 33.9 bits (76), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 334 SFRIEHNKQNDTAPPDTSTENTVETWPTADPGDATLENTGEETKSHSQSEIGLHNELEKV 393
+FR+ N +ND P D T++ ++ D NT T + + +E G+ +LE++
Sbjct: 235 AFRLVENIKNDIKPRDIITQDAIDDAFALDMAMGGSTNTVLHTLAIA-NEAGIDYDLERI 293
Query: 394 SVVAEEA-HKPELKPLCSLFYNDHYERS------NEEMNKNASEKESKVKCTKKSSVVPY 446
+ +A++ + ++ P S +D +E NE M K+ + ++ T K+
Sbjct: 294 NEIAKKTPYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRLTVTGKTLRENN 353
Query: 447 FSKNKKKQDV 456
KN K DV
Sbjct: 354 EGKNIKNFDV 363
>sp|Q5HMG3|ILVD_STAEQ Dihydroxy-acid dehydratase OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=ilvD PE=3 SV=1
Length = 562
Score = 33.9 bits (76), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 334 SFRIEHNKQNDTAPPDTSTENTVETWPTADPGDATLENTGEETKSHSQSEIGLHNELEKV 393
+FR+ N +ND P D T++ ++ D NT T + + +E G+ +LE++
Sbjct: 235 AFRLVENIKNDIKPRDIITQDAIDDAFALDMAMGGSTNTVLHTLAIA-NEAGIDYDLERI 293
Query: 394 SVVAEEA-HKPELKPLCSLFYNDHYERS------NEEMNKNASEKESKVKCTKKSSVVPY 446
+ +A++ + ++ P S +D +E NE M K+ + ++ T K+
Sbjct: 294 NEIAKKTPYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRLTVTGKTLRENN 353
Query: 447 FSKNKKKQDV 456
KN K DV
Sbjct: 354 EGKNIKNFDV 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,296,258
Number of Sequences: 539616
Number of extensions: 13786739
Number of successful extensions: 34168
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 32840
Number of HSP's gapped (non-prelim): 766
length of query: 743
length of database: 191,569,459
effective HSP length: 125
effective length of query: 618
effective length of database: 124,117,459
effective search space: 76704589662
effective search space used: 76704589662
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)