Query 004595
Match_columns 743
No_of_seqs 157 out of 265
Neff 2.9
Searched_HMMs 29240
Date Tue Mar 26 18:02:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004595.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1896-1900//hhsearch_pdb/004595hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n4c_A Auxilin; four helix bun 1.0 1 1 182.7 7.9 128 606-738 45-175 (182)
2 2qwo_B Putative tyrosine-prote 1.0 1 1 180.4 5.9 89 645-737 1-90 (92)
3 3ag7_A Putative uncharacterize 1.0 1 1 170.1 7.8 100 639-738 3-102 (106)
4 2ys8_A RAB-related GTP-binding 1.0 1 1 71.7 3.3 54 679-740 30-83 (90)
5 3lz8_A Putative chaperone DNAJ 1.0 1 1 69.9 0.0 13 39-51 27-39 (329)
6 3bvo_A CO-chaperone protein HS 1.0 1 1 68.8 3.3 85 652-738 12-105 (207)
7 1wjz_A 1700030A21RIK protein; 1.0 1 1 68.5 5.0 59 679-738 19-77 (94)
8 1iur_A KIAA0730 protein; DNAJ 1.0 1 1 68.2 4.7 53 680-738 20-72 (88)
9 2yua_A Williams-beuren syndrom 1.0 1 1 67.0 4.7 53 679-738 20-72 (99)
10 2ctw_A DNAJ homolog subfamily 1.0 1 1 66.1 4.8 53 679-738 20-72 (109)
No 1
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=1.00 E-value=1 Score=182.67 Aligned_cols=128 Identities=27% Similarity=0.439 Sum_probs=110.6
Q ss_pred CCCCC-CCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC-CCCCEEC
Q ss_conf 98885-45542223332012-112256689875089914577899999986258877199999518622489-9996003
Q 004595 606 NGSKE-TGDIDKSFQGNSLV-NQVTKDDNKLRKLGNDPQEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWP-ASGWKPV 682 (743)
Q Consensus 606 ~~~~~-~~D~~~~~~g~~~~-~~~~q~en~~~~~~~~~e~~d~Id~KI~~Ws~GKe~NIRALLSTL~~VLWe-~sgWKpV 682 (743)
+.+.+ |+||++|++..... ...+++.++|+++.+ .+..|.+..+|..|+.|+++|||+||++|+.|||+ ...|+-+
T Consensus 45 ~~~~~~F~dll~~~g~~~~~~~~~~~~~~~~r~~~~-a~~~D~l~~~i~~W~~gk~~niRaLLssl~~vl~~~~d~Y~vL 123 (182)
T 1n4c_A 45 KQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEM-AKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPV 123 (182)
T ss_dssp CCCCTTSSGGGSCSSSSCCCCCSCCCCTHHHHHHHH-HTCCCTTTHHHHHHHHHHTTCHHHHHHHGGGGSCTTCCCCCCC
T ss_pred CCCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH-HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 976768988732456551466617530999999999-9841689999998870668889999998778725766563437
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 65555671247899999886508986477888814479999999999985423202
Q 004595 683 PLVDIIEGNAVKRSYQKALLCLHPDKLQQKGATCQQTYIAEKVLIFCRRHGLISTH 738 (743)
Q Consensus 683 gIsdLVtPaqVKKAYRKAiLkvHPDKl~q~~at~EQk~IAe~VF~~LNEAYEV~~~ 738 (743)
+|...++..+||++|||+++++||||++.. ..+ .+|+.+|..|++||+|...
T Consensus 124 gv~~~As~~eIKkAYRklal~~HPDK~~~~--~~e--~~A~~~F~~I~eAYevLsD 175 (182)
T 1n4c_A 124 GMADLVTPEQVKKVYRKAVLVVHPDKATGQ--PYE--QYAKMIFMELNDAWSEFEN 175 (182)
T ss_dssp CGGGGSSHHHHHHHHHHHHHHTCGGGGSSC--TTH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--CHH--HHHHHHHHHHHHHHHHHCC
T ss_conf 887798999999999999999796868885--067--8999999999999999779
No 2
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=1.00 E-value=1 Score=180.37 Aligned_cols=89 Identities=33% Similarity=0.571 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCC-CCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 78999999862588771999995186224899-99600365555671247899999886508986477888814479999
Q 004595 645 QAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQKALLCLHPDKLQQKGATCQQTYIAE 723 (743)
Q Consensus 645 d~Id~KI~~Ws~GKe~NIRALLSTL~~VLWe~-sgWKpVgIsdLVtPaqVKKAYRKAiLkvHPDKl~q~~at~EQk~IAe 723 (743)
|.|+++|..|++||++|||+||+|||.|||++ +.|+.+||...+++.+||+||||+++++||||++.. ++.++|+
T Consensus 1 ~~i~~~i~~W~~gk~~~ir~lL~~l~~~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~----~~~~~A~ 76 (92)
T 2qwo_B 1 DPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQ----PYEQYAK 76 (92)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHGGGTSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTS----TTHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC----HHHHHHH
T ss_conf 948899999882675679999998899844545678123888779999999999999998796879895----3576899
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999998542320
Q 004595 724 KVLIFCRRHGLIST 737 (743)
Q Consensus 724 ~VF~~LNEAYEV~~ 737 (743)
.+|.+|++||+|..
T Consensus 77 ~~F~~i~eAyevL~ 90 (92)
T 2qwo_B 77 MIFMELNDAWSEFE 90 (92)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999987
No 3
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=170.14 Aligned_cols=100 Identities=63% Similarity=1.003 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99145778999999862588771999995186224899996003655556712478999998865089864778888144
Q 004595 639 NDPQEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPASGWKPVPLVDIIEGNAVKRSYQKALLCLHPDKLQQKGATCQQ 718 (743)
Q Consensus 639 ~~~e~~d~Id~KI~~Ws~GKe~NIRALLSTL~~VLWe~sgWKpVgIsdLVtPaqVKKAYRKAiLkvHPDKl~q~~at~EQ 718 (743)
..+++++.|+.+|..|+.||++|||+||++|+.+||++..|..|.+.+.+++.+||+||||+++++||||+++.+++.++
T Consensus 3 ~~~~~~~~~~~~i~~W~~~~~~~ir~lL~~l~~~l~~~~d~Y~vl~~~~As~~eIKkAYRklal~~HPDK~~~~~~~~e~ 82 (106)
T 3ag7_A 3 LGSEEIKNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQ 82 (106)
T ss_dssp TCHHHHHHHHHHHHHHHTTTTTCHHHHHTTGGGTSCTTSCCCCCCGGGSCSHHHHHHHHHHHHHHHCHHHHHHTTCCHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 11999999999999986132878999999999986166878998399879999999999999998882757775644566
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 79999999999985423202
Q 004595 719 TYIAEKVLIFCRRHGLISTH 738 (743)
Q Consensus 719 k~IAe~VF~~LNEAYEV~~~ 738 (743)
+++|+..|..|++||+|...
T Consensus 83 ~~~A~~~F~~I~~AYevLsd 102 (106)
T 3ag7_A 83 KYMAEKVFELLQEAWDHFNT 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 77899999999999999838
No 4
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=71.75 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=44.6
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 60036555567124789999988650898647788881447999999999998542320210
Q 004595 679 WKPVPLVDIIEGNAVKRSYQKALLCLHPDKLQQKGATCQQTYIAEKVLIFCRRHGLISTHLV 740 (743)
Q Consensus 679 WKpVgIsdLVtPaqVKKAYRKAiLkvHPDKl~q~~at~EQk~IAe~VF~~LNEAYEV~~~~~ 740 (743)
|+-+++...++..+||++||++++.+||||++..+ |+..|..|++||+|-..-.
T Consensus 30 y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~--------~~~~f~~i~~Ay~~L~d~~ 83 (90)
T 2ys8_A 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG--------SEDAFKAVVNARTALLKNI 83 (90)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--------HHHHHHHHHHHHHHHCCCC
T ss_conf 99909699989999999999999998849899965--------8999999999999978710
No 5
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=1.00 E-value=1 Score=69.90 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 8854445699997
Q 004595 39 DIDFDDVFGGPPR 51 (743)
Q Consensus 39 diDF~DVFGGPPR 51 (743)
..|+-+|+|=+|.
T Consensus 27 ~~d~Y~vLgv~~~ 39 (329)
T 3lz8_A 27 LKDYYAILGVQPT 39 (329)
T ss_dssp -------------
T ss_pred CCCHHHHCCCCCC
T ss_conf 4697998396999
No 6
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=68.76 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=56.6
Q ss_pred HHHHCCCC---CCHHHHHHCCCCCCCC-CCC---CEECCCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 98625887---7199999518622489-999---600365555--67124789999988650898647788881447999
Q 004595 652 RKWSNGKE---GNIRSLLSTLQYILWP-ASG---WKPVPLVDI--IEGNAVKRSYQKALLCLHPDKLQQKGATCQQTYIA 722 (743)
Q Consensus 652 ~~Ws~GKe---~NIRALLSTL~~VLWe-~sg---WKpVgIsdL--VtPaqVKKAYRKAiLkvHPDKl~q~~at~EQk~IA 722 (743)
.=|..|.. -+...++|..-.++.+ ... +.-.|+..- ++..+||++||++++.+||||++.. +...+-.|
T Consensus 12 ~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~--~~~e~~~a 89 (207)
T 3bvo_A 12 RCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQR--SQTEKDFS 89 (207)
T ss_dssp BCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTS--CHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--CHHHHHHH
T ss_conf 9999999766565335416321345799999998998599998898999999999999998785989998--78999999
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 9999999985423202
Q 004595 723 EKVLIFCRRHGLISTH 738 (743)
Q Consensus 723 e~VF~~LNEAYEV~~~ 738 (743)
...|..||+||+|-..
T Consensus 90 ~~~f~~In~AY~vLsd 105 (207)
T 3bvo_A 90 EKHSTLVNDAYKTLLA 105 (207)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999999888
No 7
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=1.00 E-value=1 Score=68.53 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=49.8
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 600365555671247899999886508986477888814479999999999985423202
Q 004595 679 WKPVPLVDIIEGNAVKRSYQKALLCLHPDKLQQKGATCQQTYIAEKVLIFCRRHGLISTH 738 (743)
Q Consensus 679 WKpVgIsdLVtPaqVKKAYRKAiLkvHPDKl~q~~at~EQk~IAe~VF~~LNEAYEV~~~ 738 (743)
|.-+|+..-++..+||++||++++.+||||++. ....+.+-.|+..|..|++||+|-..
T Consensus 19 y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~-~~~~~~~~~~~~~f~~i~~Ay~~L~d 77 (94)
T 1wjz_A 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSA-DVPAGTMEECMQKFIEIDQAWKILGN 77 (94)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCT-TCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 787099999799999999999999888098977-78714369999999999999999889
No 8
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=1.00 E-value=1 Score=68.19 Aligned_cols=53 Identities=19% Similarity=0.117 Sum_probs=43.3
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 00365555671247899999886508986477888814479999999999985423202
Q 004595 680 KPVPLVDIIEGNAVKRSYQKALLCLHPDKLQQKGATCQQTYIAEKVLIFCRRHGLISTH 738 (743)
Q Consensus 680 KpVgIsdLVtPaqVKKAYRKAiLkvHPDKl~q~~at~EQk~IAe~VF~~LNEAYEV~~~ 738 (743)
+-+|+...++..+||++||++++.+||||++.. .-.|+..|..|++||+|-..
T Consensus 20 ~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~------~~~a~~~F~~I~~AYevL~~ 72 (88)
T 1iur_A 20 SVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN------HDIANEVFKHLQNEINRLEK 72 (88)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC------HHHHHHHHHHHHHHHHHHHH
T ss_conf 994989998999999999999999887989874------48999999999999999972
No 9
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=67.04 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=44.7
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 600365555671247899999886508986477888814479999999999985423202
Q 004595 679 WKPVPLVDIIEGNAVKRSYQKALLCLHPDKLQQKGATCQQTYIAEKVLIFCRRHGLISTH 738 (743)
Q Consensus 679 WKpVgIsdLVtPaqVKKAYRKAiLkvHPDKl~q~~at~EQk~IAe~VF~~LNEAYEV~~~ 738 (743)
|+-++|...++..+||++||++++.+||||++... .|+..|..|++||+|-..
T Consensus 20 Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-------~a~~~f~~i~~Ay~~L~d 72 (99)
T 2yua_A 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA-------EAAERFTRISQAYVVLGS 72 (99)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCS-------HHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH-------HHHHHHHHHHHHHHHHCC
T ss_conf 88829999989999999999999998839899978-------999999999999999879
No 10
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=66.08 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=44.7
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 600365555671247899999886508986477888814479999999999985423202
Q 004595 679 WKPVPLVDIIEGNAVKRSYQKALLCLHPDKLQQKGATCQQTYIAEKVLIFCRRHGLISTH 738 (743)
Q Consensus 679 WKpVgIsdLVtPaqVKKAYRKAiLkvHPDKl~q~~at~EQk~IAe~VF~~LNEAYEV~~~ 738 (743)
|+-++|..-++..+||++||++++.+||||++.. . .|+..|..|++||+|-..
T Consensus 20 Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~---~----~a~~~f~~i~~Ay~vL~d 72 (109)
T 2ctw_A 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN---P----EAADKFKEINNAHAILTD 72 (109)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC---H----HHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---H----HHHHHHHHHHHHHHHHCC
T ss_conf 9991969999999999999999999883978886---7----999999999999999859
Done!