Query 004596
Match_columns 743
No_of_seqs 302 out of 1843
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 18:19:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004596.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1896-1900//hhsearch_pdb/004596hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8c_A Periplasmic PH-dependen 1.0 1 1 243.9 22.5 192 384-661 16-237 (436)
2 4fln_A Protease DO-like 2, chl 1.0 1 1 242.0 21.2 187 388-661 44-249 (539)
3 3sti_A Protease DEGQ; serine p 1.0 1 1 240.3 18.7 192 384-661 16-237 (245)
4 3stj_A Protease DEGQ; serine p 1.0 1 1 239.9 23.7 192 384-661 16-237 (345)
5 3pv2_A DEGQ; trypsin fold, PDZ 1.0 1 1 235.2 19.0 172 403-661 77-255 (451)
6 1ky9_A Protease DO, DEGP, HTRA 1.0 1 1 232.7 23.4 207 403-696 86-298 (448)
7 3qo6_A Protease DO-like 1, chl 1.0 1 1 228.3 21.0 195 385-661 21-230 (348)
8 3lgi_A Protease DEGS; stress-s 1.0 1 1 226.4 21.6 196 382-661 21-229 (237)
9 1l1j_A Heat shock protease HTR 1.0 1 1 222.6 16.2 193 385-660 8-231 (239)
10 1te0_A Protease DEGS; two doma 1.0 1 1 220.8 23.7 195 383-661 11-218 (318)
No 1
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=1.00 E-value=1 Score=243.87 Aligned_cols=192 Identities=29% Similarity=0.521 Sum_probs=158.7
Q ss_pred CHHHHHCCCCEEEEEECC----------------------------CEEEEEEEEECC-CEEEECCCCCCCCCCCCEECC
Q ss_conf 067875048469999789----------------------------826899999189-769962643466667530005
Q 004596 384 PLPIQKALASVCLITIDD----------------------------GVWASGVLLNDQ-GLILTNAHLLEPWRFGKTTVS 434 (743)
Q Consensus 384 p~~i~~a~~SVV~I~~~~----------------------------~~wGSGviIs~~-GlILTNaHVV~p~~~~~t~~~ 434 (743)
..+++++.||||.|.+.. .++||||+|+++ ||||||+||++
T Consensus 16 ~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~~~G~IlTn~Hvv~---------- 85 (436)
T 4a8c_A 16 APMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN---------- 85 (436)
T ss_pred HHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHHHC----------
T ss_conf 9999863794799999875125666760556641555544557767547899999899898998879919----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEE
Q ss_conf 88666455888887889876542233468999998533564110000002334578426999974798731595699974
Q 004596 435 GWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYV 514 (743)
Q Consensus 435 G~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~~~~~l~~~~~~~I~V~l~~~~~~~W~~a~VV~v 514 (743)
+ ...+.|++.+++. +++++++
T Consensus 86 ~-------------------------------------------------------a~~i~V~~~dg~~---~~a~vv~- 106 (436)
T 4a8c_A 86 Q-------------------------------------------------------AQKISIQLNDGRE---FDAKLIG- 106 (436)
T ss_pred C-------------------------------------------------------CCEEEEEECCCCE---EEEEEEE-
T ss_conf 9-------------------------------------------------------9889999579989---9999999-
Q ss_pred CCCCCCEEEEEECCCCCCCCCEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 599970799998358999630347999-9999996999911998899899990675799414421688777665556888
Q 004596 515 CKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSA 593 (743)
Q Consensus 515 ~~~~~DIALLkle~~p~~l~pi~l~~s-~i~~Ge~V~vIGyplf~~~~G~~psvt~GiIS~vv~~~~~~~~~~~~~~~~~ 593 (743)
.|+.+||||||++. +..++++.++++ .+..|+.|+++||| +++..+++.|+|+++.+... ....
T Consensus 107 ~d~~~DlAllkv~~-~~~l~~~~l~~s~~~~~G~~v~aiG~P-----~g~~~~vt~G~vs~~~r~~~---------~~~~ 171 (436)
T 4a8c_A 107 SDDQSDIALLQIQN-PSKLTQIAIADSDKLRVGDFAVAVGNP-----FGLGQTATSGIVSALGRSGL---------NLEG 171 (436)
T ss_pred ECCCCCEEEEEECC-CCCCCEEECCCCCCCCCCCEEEEEECC-----CCCCCCEEEEEEEEECCCCC---------CCCC
T ss_conf 74888989999347-788955761673547779889999767-----88786277779964224655---------7777
Q ss_pred CCEEEEECCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 67099991134799866620127951999996220389996567316998145799999999960772
Q 004596 594 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEV 661 (743)
Q Consensus 594 ~~~~IqTtAav~pGnSGGPLin~~G~VIGIvtsna~~~gg~~~p~lnFaIPi~~l~~il~~l~~~~d~ 661 (743)
+..++||||++++|+|||||||.+|+||||+++.....++.. +++|+||++.++++++++...+.+
T Consensus 172 ~~~~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~--g~gfaIP~~~~~~~~~~l~~~g~v 237 (436)
T 4a8c_A 172 LENFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSV--GIGFAIPSNMARTLAQQLIDFGEI 237 (436)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCE--EEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 468799927528988727602789779999711016889723--578888668899999998744545
No 2
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=242.01 Aligned_cols=187 Identities=24% Similarity=0.312 Sum_probs=143.8
Q ss_pred HHCCCCEEEEEECC---------------CEEEEEEEEECCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 75048469999789---------------826899999189769962643466667530005886664558888878898
Q 004596 388 QKALASVCLITIDD---------------GVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGH 452 (743)
Q Consensus 388 ~~a~~SVV~I~~~~---------------~~wGSGviIs~~GlILTNaHVV~p~~~~~t~~~G~~~~~~~~~~~~~~~~~ 452 (743)
...++|||.|.+.. .+.||||+|++ ||||||+|||+ +
T Consensus 44 ~~~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~d-G~IlTN~HVV~----------~----------------- 95 (539)
T 4fln_A 44 ASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIGD-GKLLTNAHCVE----------H----------------- 95 (539)
T ss_dssp HHHHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEET-TEEEECGGGGT----------T-----------------
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEC-CEEEECHHHCC----------C-----------------
T ss_conf 1147876999977647787785414786606799999979-99997868828----------9-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-CCCCCEEEEEEEEEECCCCCCEEEEEECC--C
Q ss_conf 76542233468999998533564110000002334578426999974-79873159569997459997079999835--8
Q 004596 453 TGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLD-HLDPWIWCDAKIVYVCKGPLDVSLLQLGY--I 529 (743)
Q Consensus 453 ~~~~~~~~~q~~~~k~~~i~~~~~~~~~~~~~~l~~~~~~~I~V~l~-~~~~~~W~~a~VV~v~~~~~DIALLkle~--~ 529 (743)
...|.|++. +++. ++|++++ .++..||||||++. .
T Consensus 96 --------------------------------------a~~i~V~~~~dg~~---~~A~vv~-~D~~~DLAvLkv~~~~~ 133 (539)
T 4fln_A 96 --------------------------------------DTQVKVKRRGDDRK---YVAKVLV-RGVDCDIALLSVESEDF 133 (539)
T ss_dssp --------------------------------------EEEEEEECTTCCCC---EEEEEEE-EETTTTEEEEEECCSSS
T ss_pred --------------------------------------CCEEEEEECCCCEE---EEEEEEE-ECCCCCEEEEEEECCCC
T ss_conf --------------------------------------98699999269979---9999999-77998889999807767
Q ss_pred CCCCCCEECCCCCCCCCCEEEEEECCCCCCCCCC-CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 9996303479999999996999911998899899-990675799414421688777665556888670999911347998
Q 004596 530 PDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGL-SPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGG 608 (743)
Q Consensus 530 p~~l~pi~l~~s~i~~Ge~V~vIGyplf~~~~G~-~psvt~GiIS~vv~~~~~~~~~~~~~~~~~~~~~IqTtAav~pGn 608 (743)
+..+.|+.++++ ++.|+.|+++||| +|. ..++|.|+||++.+.... .......+|||||++++||
T Consensus 134 ~~~~~pl~~g~~-~~vGd~V~aiG~P-----~g~~~~tvT~GIVSa~~r~~~~--------~~~~~~~~IQtDAaInpGn 199 (539)
T 4fln_A 134 WKGAEPLRLGHL-PRLQDSVTVVGYP-----LGGDTISVTKGVVSRIEVTSYA--------HGSSDLLGIQIDAAINPGN 199 (539)
T ss_dssp STTCCCCCBCCC-CCTTCEEEEEECC-----SSSCCCEEEEEEEEEEEEEECT--------TSCCEEEEEEESSCCCTTT
T ss_pred CCCCCEEECCCC-CCCCCEEEEEECC-----CCCCCCCEEEEEECCCCCCCCC--------CCCCCEEEEEEEEEECCCC
T ss_conf 767845425886-7679969999868-----9999876784798756444457--------8874156999976865998
Q ss_pred CCCCEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 66620127951999996220389996567316998145799999999960772
Q 004596 609 SGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEV 661 (743)
Q Consensus 609 SGGPLin~~G~VIGIvtsna~~~gg~~~p~lnFaIPi~~l~~il~~l~~~~d~ 661 (743)
|||||||.+|+||||+++..+..++ .+++|+||++.++++++++...+.+
T Consensus 200 SGGPLvn~~GeVIGIntai~~~~~~---~gigfAIP~~~v~~vl~~l~~~G~~ 249 (539)
T 4fln_A 200 SGGPAFNDQGECIGVAFQVYRSEET---ENIGYVIPTTVVSHFLTDYERNGKY 249 (539)
T ss_dssp TTSEEECSSSCEEEEECCCC--------CCCEEEEEHHHHHHHHHHHHTTTSC
T ss_pred CCCHHCCCCCCEEEEEEEEECCCCC---CCCEECCCHHHHHHHHHHHHHCCEE
T ss_conf 3344003799689899888437888---8630003199999999999976927
No 3
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=1.00 E-value=1 Score=240.34 Aligned_cols=192 Identities=30% Similarity=0.524 Sum_probs=156.3
Q ss_pred CHHHHHCCCCEEEEEECC----------------------------CEEEEEEEEECC-CEEEECCCCCCCCCCCCEECC
Q ss_conf 067875048469999789----------------------------826899999189-769962643466667530005
Q 004596 384 PLPIQKALASVCLITIDD----------------------------GVWASGVLLNDQ-GLILTNAHLLEPWRFGKTTVS 434 (743)
Q Consensus 384 p~~i~~a~~SVV~I~~~~----------------------------~~wGSGviIs~~-GlILTNaHVV~p~~~~~t~~~ 434 (743)
..+++++.+|||.|.+.. .+.||||+|+++ ||||||+||++
T Consensus 16 ~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHvv~---------- 85 (245)
T 3sti_A 16 APMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN---------- 85 (245)
T ss_dssp HHHHHHHGGGEEEC----------------------------------CCEEEEEETTTTEEEECGGGC-----------
T ss_pred HHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECHHHHC----------
T ss_conf 9999873796699999874125666650445531455554456666626899999699899997378808----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEE
Q ss_conf 88666455888887889876542233468999998533564110000002334578426999974798731595699974
Q 004596 435 GWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYV 514 (743)
Q Consensus 435 G~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~~~~~l~~~~~~~I~V~l~~~~~~~W~~a~VV~v 514 (743)
+ ...+.|++.+++. +++++++
T Consensus 86 ~-------------------------------------------------------a~~i~V~~~dg~~---~~a~vv~- 106 (245)
T 3sti_A 86 Q-------------------------------------------------------AQKISIQLNDGRE---FDAKLIG- 106 (245)
T ss_dssp ----------------------------------------------------------CEEEECTTSCE---EEEEEEE-
T ss_pred C-------------------------------------------------------CCEEEEEECCCCE---EEEEEEE-
T ss_conf 9-------------------------------------------------------9779999789989---9999998-
Q ss_pred CCCCCCEEEEEECCCCCCCCCEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 599970799998358999630347999-9999996999911998899899990675799414421688777665556888
Q 004596 515 CKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSA 593 (743)
Q Consensus 515 ~~~~~DIALLkle~~p~~l~pi~l~~s-~i~~Ge~V~vIGyplf~~~~G~~psvt~GiIS~vv~~~~~~~~~~~~~~~~~ 593 (743)
.++.+||||||++. +..++++.+.++ .+..|+.|+++|| |+|...+++.|+|++..+... ....
T Consensus 107 ~d~~~DlAlLkv~~-~~~~~~~~l~~s~~~~~G~~v~aiG~-----P~g~~~~vt~G~vs~~~~~~~---------~~~~ 171 (245)
T 3sti_A 107 SDDQSDIALLQIQN-PSKLTQIAIADSDKLRVGDFAVAVGN-----PFGLGQTATSGIVSALGRSGL---------NLEG 171 (245)
T ss_dssp EETTTTEEEEEESS-CCSCCCCCBCCGGGCCTTBEEEEEEC-----GGGSCCEEEEEEEEECSSCSS---------CCTT
T ss_pred ECCCCCEEEEEECC-CCCCCEEEECCCCCCCCCCEEEEEEC-----CCCCCCCEEEEEEEEECCCCC---------CCCC
T ss_conf 64789889999306-77773366068677897999999989-----898788687669955134555---------7788
Q ss_pred CCEEEEECCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 67099991134799866620127951999996220389996567316998145799999999960772
Q 004596 594 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEV 661 (743)
Q Consensus 594 ~~~~IqTtAav~pGnSGGPLin~~G~VIGIvtsna~~~gg~~~p~lnFaIPi~~l~~il~~l~~~~d~ 661 (743)
...++|+|+++++|+|||||||.+|+||||+++.....++.. +++|+||++.++++++++...+++
T Consensus 172 ~~~~i~tda~i~~G~SGGPLvn~~G~vVGI~s~~~~~~~~~~--g~~faIP~~~~~~~~~~l~~~g~~ 237 (245)
T 3sti_A 172 LENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSV--GIGFAIPSNMARTLAQQLIDFGEI 237 (245)
T ss_dssp CSSCEEESSCCCTTTTTSEEECTTSCEEEEEECCC------C--CCEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCHHHEECCCCEEEEEEEEEECCCCCCC--EEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 568899857739975426854179859999976798899843--089998699999999999980997
No 4
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=1.00 E-value=1 Score=239.86 Aligned_cols=192 Identities=30% Similarity=0.523 Sum_probs=158.5
Q ss_pred CHHHHHCCCCEEEEEECC----------------------------CEEEEEEEEECC-CEEEECCCCCCCCCCCCEECC
Q ss_conf 067875048469999789----------------------------826899999189-769962643466667530005
Q 004596 384 PLPIQKALASVCLITIDD----------------------------GVWASGVLLNDQ-GLILTNAHLLEPWRFGKTTVS 434 (743)
Q Consensus 384 p~~i~~a~~SVV~I~~~~----------------------------~~wGSGviIs~~-GlILTNaHVV~p~~~~~t~~~ 434 (743)
..+++++.+|||.|.+.. .++||||+|+++ ||||||+||++
T Consensus 16 ~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHVv~---------- 85 (345)
T 3stj_A 16 APMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN---------- 85 (345)
T ss_dssp HHHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEETTTTEEEECHHHHT----------
T ss_pred HHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHHHC----------
T ss_conf 9999873895799999875225666751556642555654457666526999999899798997769949----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEE
Q ss_conf 88666455888887889876542233468999998533564110000002334578426999974798731595699974
Q 004596 435 GWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYV 514 (743)
Q Consensus 435 G~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~~~~~l~~~~~~~I~V~l~~~~~~~W~~a~VV~v 514 (743)
+ ...+.|++.++.. +++++++
T Consensus 86 ~-------------------------------------------------------~~~i~V~~~dg~~---~~a~vv~- 106 (345)
T 3stj_A 86 Q-------------------------------------------------------AQKISIQLNDGRE---FDAKLIG- 106 (345)
T ss_dssp T-------------------------------------------------------EEEEEEECTTSCE---EEEEEEE-
T ss_pred C-------------------------------------------------------CCEEEEEECCCCE---EEEEEEE-
T ss_conf 9-------------------------------------------------------9889999689969---9999999-
Q ss_pred CCCCCCEEEEEECCCCCCCCCEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 599970799998358999630347999-9999996999911998899899990675799414421688777665556888
Q 004596 515 CKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSA 593 (743)
Q Consensus 515 ~~~~~DIALLkle~~p~~l~pi~l~~s-~i~~Ge~V~vIGyplf~~~~G~~psvt~GiIS~vv~~~~~~~~~~~~~~~~~ 593 (743)
.++.+||||||++. +..++++.+.++ .+..|+.|+++||| ++...+++.|+|++..+... ....
T Consensus 107 ~d~~~DlAlLkv~~-~~~~~~~~l~~s~~~~~G~~V~aiG~p-----~g~~~~vt~G~Vs~~~~~~~---------~~~~ 171 (345)
T 3stj_A 107 SDDQSDIALLQIQN-PSKLTQIAIADSDKLRVGDFAVAVGNP-----FGLGQTATSGIVSALGRSGL---------NLEG 171 (345)
T ss_dssp EETTTTEEEEEESS-CCSCCCCCBCCGGGCCTTBEEEEEECG-----GGCSCEEEEEEEEEEEECCS---------SSSS
T ss_pred ECCCCCEEEEEECC-CCCCCEEEECCCCCCCCCCEEEEEECC-----CCCCCCEEEEEEEEECCCCC---------CCCC
T ss_conf 86999989999756-678844761584557879999999878-----88787177669956324665---------8777
Q ss_pred CCEEEEECCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 67099991134799866620127951999996220389996567316998145799999999960772
Q 004596 594 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEV 661 (743)
Q Consensus 594 ~~~~IqTtAav~pGnSGGPLin~~G~VIGIvtsna~~~gg~~~p~lnFaIPi~~l~~il~~l~~~~d~ 661 (743)
+..++|+||++++|+|||||||.+|+||||+++.....++.. +++|+||++.++++++++...+.+
T Consensus 172 ~~~~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~~~~~~--g~gfaIP~~~~~~~~~~l~~~g~v 237 (345)
T 3stj_A 172 LENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSV--GIGFAIPSNMARTLAQQLIDFGEI 237 (345)
T ss_dssp SCCEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECTTSSCS--SCEEEEEHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCC--EEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 367799956639986713444889889999841026877751--057898528999999998751444
No 5
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=1.00 E-value=1 Score=235.19 Aligned_cols=172 Identities=26% Similarity=0.453 Sum_probs=142.0
Q ss_pred EEEEEEEEECC-CEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26899999189-76996264346666753000588666455888887889876542233468999998533564110000
Q 004596 403 VWASGVLLNDQ-GLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRA 481 (743)
Q Consensus 403 ~wGSGviIs~~-GlILTNaHVV~p~~~~~t~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~ 481 (743)
++||||+|+++ ||||||+||++ +
T Consensus 77 ~~GSGfiI~~~~G~IlTn~HVv~----------~---------------------------------------------- 100 (451)
T 3pv2_A 77 SIGSGVIIDPNNGVIITNDHVIR----------N---------------------------------------------- 100 (451)
T ss_dssp EEEEEEEEETTTTEEEECHHHHT----------T----------------------------------------------
T ss_pred EEEEEEEEECCCCEEEECHHHHC----------C----------------------------------------------
T ss_conf 24799999899999997869939----------9----------------------------------------------
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCEECCCC-CCCCCCEEEEEECCCCCCC
Q ss_conf 002334578426999974798731595699974599970799998358999630347999-9999996999911998899
Q 004596 482 YKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPR 560 (743)
Q Consensus 482 ~~~~l~~~~~~~I~V~l~~~~~~~W~~a~VV~v~~~~~DIALLkle~~p~~l~pi~l~~s-~i~~Ge~V~vIGyplf~~~ 560 (743)
...+.|++.++.. +++++++ .++.+||||||++. ..++++.++++ .+..|++|+++|||
T Consensus 101 ---------a~~i~V~~~dg~~---~~a~vv~-~d~~~DlAlLkv~~--~~l~~~~l~~s~~~~~G~~V~aiG~P----- 160 (451)
T 3pv2_A 101 ---------ASLITVTLQDGRR---LKARLIG-GDSETDLAVLKIDA--KNLKSLVIGDSDKLEVGDFVVAIGNP----- 160 (451)
T ss_dssp ---------EEEEEEECTTSCE---EECEEEE-EETTTTEEEEECCC--SSCCCCCBCCGGGCCTTCEEEEEECC-----
T ss_pred ---------CCEEEEEECCCCE---EEEEEEE-CCCCCCEEEEEECC--CCCCEEEECCCCCCCCCCEEEEEECC-----
T ss_conf ---------9889999769979---9999992-47577479999768--67855674572448879989999899-----
Q ss_pred CCCC-----CEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCC
Q ss_conf 8999-----90675799414421688777665556888670999911347998666201279519999962203899965
Q 004596 561 CGLS-----PSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTV 635 (743)
Q Consensus 561 ~G~~-----psvt~GiIS~vv~~~~~~~~~~~~~~~~~~~~~IqTtAav~pGnSGGPLin~~G~VIGIvtsna~~~gg~~ 635 (743)
+|.. .+++.|+|++..+... ....+..++||||++++|||||||||.+|+||||+++...+.++..
T Consensus 161 ~G~~~~~~~~~vt~Givs~~~r~~~---------~~~~~~~~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~~~~~~ 231 (451)
T 3pv2_A 161 FGLNSFGNSQSATFGIVSALKRSDL---------NIEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNV 231 (451)
T ss_dssp CCC-----CCEEEEEEEEEEC-------------------CCEEESSCCCGGGTTSEEEETTCCEEEEEECCC------C
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCC---------CCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC
T ss_conf 8756656677356799943133555---------7777413899844527998748251889749999968663788853
Q ss_pred CCCEEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 67316998145799999999960772
Q 004596 636 IPHLNFSIPCAVLRPIFEFARDMQEV 661 (743)
Q Consensus 636 ~p~lnFaIPi~~l~~il~~l~~~~d~ 661 (743)
+++|+||++.++++++++...+.+
T Consensus 232 --g~gfaIP~~~~~~~~~~l~~~g~v 255 (451)
T 3pv2_A 232 --GIGFAIPINMVKDVAQQIIKFGSI 255 (451)
T ss_dssp --CCEEEEEHHHHHHHHHHHHHHSSC
T ss_pred --CEEEEEHHHHHHHHHHHHHHCCCC
T ss_conf --244440068899999999862976
No 6
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=1.00 E-value=1 Score=232.72 Aligned_cols=207 Identities=28% Similarity=0.451 Sum_probs=154.8
Q ss_pred EEEEEEEEECC-CEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26899999189-76996264346666753000588666455888887889876542233468999998533564110000
Q 004596 403 VWASGVLLNDQ-GLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRA 481 (743)
Q Consensus 403 ~wGSGviIs~~-GlILTNaHVV~p~~~~~t~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~ 481 (743)
++||||+|+++ ||||||+||++ +
T Consensus 86 ~~GSG~ii~~~~g~IlTn~HVv~----------~---------------------------------------------- 109 (448)
T 1ky9_A 86 ALGSGVIIDADKGYVVTNNHVVD----------N---------------------------------------------- 109 (448)
T ss_dssp EEEEEEEEETTTTEEEEEHHHHT----------T----------------------------------------------
T ss_pred CEEEEEEEECCCCEEEECHHHHC----------C----------------------------------------------
T ss_conf 17999999899899997758949----------9----------------------------------------------
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCEECCCC-CCCCCCEEEEEECCCCCCC
Q ss_conf 002334578426999974798731595699974599970799998358999630347999-9999996999911998899
Q 004596 482 YKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPR 560 (743)
Q Consensus 482 ~~~~l~~~~~~~I~V~l~~~~~~~W~~a~VV~v~~~~~DIALLkle~~p~~l~pi~l~~s-~i~~Ge~V~vIGyplf~~~ 560 (743)
...|.|++.++.. +++++++ .++.+|||||+++. +..+++++++++ .+++|+.|+++|||
T Consensus 110 ---------a~~i~V~~~dg~~---~~a~vv~-~d~~~DlAvlkv~~-~~~~~~~~l~~s~~~~~G~~V~aiG~P----- 170 (448)
T 1ky9_A 110 ---------ATVIKVQLSDGRK---FDAKMVG-KDPRSDIALIQIQN-PKNLTAIKMADSDALRVGDYTVAIGNP----- 170 (448)
T ss_dssp ---------EEEEEEEETTSCE---EEEEEEE-EETTTTEEEEEESS-CCSCCCCCBCCGGGCCTTCEEEEEECT-----
T ss_pred ---------CCEEEEEECCCCE---EEEEEEE-ECCCCCEEEEEECC-CCCCCEEEECCCCCCCCCCEEEEEECC-----
T ss_conf ---------9879999789979---9999999-75889989999668-899826884460348889979999888-----
Q ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCCEE
Q ss_conf 89999067579941442168877766555688867099991134799866620127951999996220389996567316
Q 004596 561 CGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLN 640 (743)
Q Consensus 561 ~G~~psvt~GiIS~vv~~~~~~~~~~~~~~~~~~~~~IqTtAav~pGnSGGPLin~~G~VIGIvtsna~~~gg~~~p~ln 640 (743)
+|+..+++.|+|+++.+... ....+..+|||||++++|||||||||.+|+||||+++.....++.. +++
T Consensus 171 ~g~~~tvt~Givs~~~r~~~---------~~~~~~~~iqtda~i~~GnSGGpl~n~~G~vvGI~~~~~~~~~~~~--g~g 239 (448)
T 1ky9_A 171 FGLGETVTSGIVSALGRSGL---------NAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNI--GIG 239 (448)
T ss_dssp TSSSCEEEEEEEEEESSCC--------------CCCCEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCS--SSE
T ss_pred CCCCCEEEEEEEEECCCCCC---------CCCCCCCEEEECCCCCCCCCCCEEECCCCEEEEEEEEEECCCCCCC--CEE
T ss_conf 88887188689950355655---------7777567799837878977788368779889999877535888745--324
Q ss_pred EEEEHHHHHHHHHHHHHCCCCC----HHCCCCCCCCCHHEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9981457999999999607720----0013688882011023425999999899999998
Q 004596 641 FSIPCAVLRPIFEFARDMQEVS----LLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLP 696 (743)
Q Consensus 641 FaIPi~~l~~il~~l~~~~d~~----~l~~l~~~~~~v~~vW~L~p~~~~~~~~~~~~~p 696 (743)
|+||++.++++++++...+.+. .+. ....++..+.-+.+............++-|
T Consensus 240 faIP~~~~~~~~~~l~~~g~v~~~~LGv~-~~~~~~~~a~~lgl~~~~G~~V~~V~~gsp 298 (448)
T 1ky9_A 240 FAIPSNMVKNLTSQMVEYGQVKRGELGIM-GTELNSELAKAMKVDAQRGAFVSQVLPNSS 298 (448)
T ss_dssp EEEEHHHHHHHHHHHHHHSSCCBCCCCCS-CCCTTSHHHHTSCCTTCCSEECCCCTTCSS
T ss_pred EEEECCCCHHHHHHHHHHCCCCEECCCCC-CCCCCHHHHHHHCCCCCCCEEEEEECCCCH
T ss_conf 25630320114999864212410024432-344459999971899888469999455897
No 7
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=228.30 Aligned_cols=195 Identities=27% Similarity=0.419 Sum_probs=155.0
Q ss_pred HHHHHCCCCEEEEEECC--------------CEEEEEEEEECCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 67875048469999789--------------8268999991897699626434666675300058866645588888788
Q 004596 385 LPIQKALASVCLITIDD--------------GVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASS 450 (743)
Q Consensus 385 ~~i~~a~~SVV~I~~~~--------------~~wGSGviIs~~GlILTNaHVV~p~~~~~t~~~G~~~~~~~~~~~~~~~ 450 (743)
.+++++.+|||.|.... .++||||+|+++||||||+||++ +
T Consensus 21 ~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~~g~GSG~iI~~~G~IlT~aHvv~----------~--------------- 75 (348)
T 3qo6_A 21 RLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIR----------G--------------- 75 (348)
T ss_dssp HHHHHHGGGEEEEEEEEEEECSSSCCEEEEEEEEEEEEEEETTTEEEECHHHHT----------T---------------
T ss_pred HHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEECHHHHC----------C---------------
T ss_conf 999972797999997761356545554434683499999918988998878908----------9---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCC
Q ss_conf 98765422334689999985335641100000023345784269999747987315956999745999707999983589
Q 004596 451 GHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIP 530 (743)
Q Consensus 451 ~~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~~~~~l~~~~~~~I~V~l~~~~~~~W~~a~VV~v~~~~~DIALLkle~~p 530 (743)
...+.+++.++.. +++++++ .++.+||||||++...
T Consensus 76 ----------------------------------------~~~i~V~~~~g~~---~~a~~v~-~d~~~DlAlLkl~~~~ 111 (348)
T 3qo6_A 76 ----------------------------------------ASDLRVTLADQTT---FDAKVVG-FDQDKDVAVLRIDAPK 111 (348)
T ss_dssp ----------------------------------------CSEEEEECTTSCE---EEEEEEE-EEGGGTEEEEECCCCG
T ss_pred ----------------------------------------CCEEEEEECCCCE---EEEEEEE-ECCCCCEEEEEECCCC
T ss_conf ----------------------------------------8679999779979---9899999-8676787999975887
Q ss_pred CCCCCEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 99630347999-99999969999119988998999906757994144216887776655568886709999113479986
Q 004596 531 DQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGS 609 (743)
Q Consensus 531 ~~l~pi~l~~s-~i~~Ge~V~vIGyplf~~~~G~~psvt~GiIS~vv~~~~~~~~~~~~~~~~~~~~~IqTtAav~pGnS 609 (743)
..++++.++++ .+..|+.|+++||| .+...+++.|+++.+.+...... .......++|+++++++|+|
T Consensus 112 ~~~~~i~l~~s~~~~~G~~v~~iG~p-----~g~~~~~~~g~vs~~~~~~~~~~------~~~~~~~~i~~da~i~~G~S 180 (348)
T 3qo6_A 112 NKLRPIPVGVSADLLVGQKVFAIGNP-----FGLDHTLTTGVISGLRREISSAA------TGRPIQDVIQTDAAINPGNS 180 (348)
T ss_dssp GGCCCCCBCCSTTCCTTCEEEEEECG-----GGCTTEEEEEEEEEEEEEECCSS------SSSCEEEEEEECSCCCTTCT
T ss_pred CCCEEEEECCCCCCCCCCEEEEEECC-----CCCCCCEEEEEEEEECCCCCCCC------CCCCCCCEEEEECCCCCCCC
T ss_conf 77415770673557889989999878-----98887675789976523102356------78742688999177199875
Q ss_pred CCCEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 6620127951999996220389996567316998145799999999960772
Q 004596 610 GGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEV 661 (743)
Q Consensus 610 GGPLin~~G~VIGIvtsna~~~gg~~~p~lnFaIPi~~l~~il~~l~~~~d~ 661 (743)
||||+|.+|++|||+++.....++. .+++|+||++.++++++++...+.+
T Consensus 181 GGPLvn~~G~vvGI~s~~~~~~~~~--~g~gfaiP~~~~~~~~~~l~~~g~~ 230 (348)
T 3qo6_A 181 GGPLLDSSGTLIGINTAIYSPSGAS--SGVGFSIPVDTVGGIVDQLVRFGKV 230 (348)
T ss_dssp TCEEECTTSCEEEEEEEEECSSSSC--SSCEEEEEHHHHHHHHHHHHHHSSC
T ss_pred HHHHHCCCCEEEEEEEEEECCCCCC--CCEEEEEEECCHHHHHHHHHHCCCE
T ss_conf 7890379982999997622688874--6379999935547999999867925
No 8
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=1.00 E-value=1 Score=226.39 Aligned_cols=196 Identities=23% Similarity=0.374 Sum_probs=155.9
Q ss_pred CCCHHHHHCCCCEEEEEECCC-----------EEEEEEEEECCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 990678750484699997898-----------268999991897699626434666675300058866645588888788
Q 004596 382 RSPLPIQKALASVCLITIDDG-----------VWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASS 450 (743)
Q Consensus 382 ~~p~~i~~a~~SVV~I~~~~~-----------~wGSGviIs~~GlILTNaHVV~p~~~~~t~~~G~~~~~~~~~~~~~~~ 450 (743)
....+++++.+|||.|..... .+||||+|+++||||||+||++ +
T Consensus 21 ~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~GsG~ii~~~G~IlTaaHvv~----------~--------------- 75 (237)
T 3lgi_A 21 SYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIN----------D--------------- 75 (237)
T ss_dssp BCHHHHHHHGGGEEEEEEECCTTTCTTSCCEEEEEEEEEEETTTEEEEEHHHHT----------T---------------
T ss_pred CHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECC----------C---------------
T ss_conf 899999973895899997732567666644331789999938989999226437----------9---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCC
Q ss_conf 98765422334689999985335641100000023345784269999747987315956999745999707999983589
Q 004596 451 GHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIP 530 (743)
Q Consensus 451 ~~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~~~~~l~~~~~~~I~V~l~~~~~~~W~~a~VV~v~~~~~DIALLkle~~p 530 (743)
...+.|++.++.. +++++++ .++.+|||||+++. +
T Consensus 76 ----------------------------------------~~~~~V~~~~g~~---~~a~vv~-~d~~~DlAll~l~~-~ 110 (237)
T 3lgi_A 76 ----------------------------------------ADQIIVALQDGRV---FEALLVG-SDSLTDLAVLKINA-T 110 (237)
T ss_dssp ----------------------------------------CSEEEEECTTSCE---EEEEEEE-EETTTTEEEEECCC-S
T ss_pred ----------------------------------------CCEEEEEECCCCE---EEEEEEE-ECCCCCEEEEEECC-C
T ss_conf ----------------------------------------9789999479989---9989999-73888989999358-7
Q ss_pred CCCCCEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 99630347999-99999969999119988998999906757994144216887776655568886709999113479986
Q 004596 531 DQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGS 609 (743)
Q Consensus 531 ~~l~pi~l~~s-~i~~Ge~V~vIGyplf~~~~G~~psvt~GiIS~vv~~~~~~~~~~~~~~~~~~~~~IqTtAav~pGnS 609 (743)
..++++.+.++ .+..|+.|+++||| .+...+++.|+++...+.... ......++++++.+++|+|
T Consensus 111 ~~~~~~~l~~~~~~~~G~~v~~~G~p-----~~~~~~~~~g~vs~~~~~~~~---------~~~~~~~i~~d~~i~~G~S 176 (237)
T 3lgi_A 111 GGLPTIPINARRVPHIGDVVLAIGNP-----YNLGQTITQGIISATGRIGLN---------PTGRQNFLQTDASINHGNS 176 (237)
T ss_dssp SCCCCCCCCTTCCCCTTBEEEEEECG-----GGSCSEEEEEEEEEECCSSCC---------TTSCSCCEEECSCCCTTCT
T ss_pred CCCCEEECCCCCCCCCCCEEEEEECC-----CCCCCCEEEEEEEECCCCCCC---------CCCCCCEEEECCCCCCCCC
T ss_conf 88751761675668989999999878-----887886887899761421115---------7886788998075189986
Q ss_pred CCCEECCCCEEEEEEEEEECCCC-CCCCCCEEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 66201279519999962203899-96567316998145799999999960772
Q 004596 610 GGAVVNLDGHMIGLVTSNARHGG-GTVIPHLNFSIPCAVLRPIFEFARDMQEV 661 (743)
Q Consensus 610 GGPLin~~G~VIGIvtsna~~~g-g~~~p~lnFaIPi~~l~~il~~l~~~~d~ 661 (743)
||||||.+|+||||+++...... +....+++|+||++.++++++++...++.
T Consensus 177 GGPlv~~~G~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~~g~~ 229 (237)
T 3lgi_A 177 GGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRV 229 (237)
T ss_dssp TCEEECTTCCEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHHHSSC
T ss_pred HHHEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 37856899869999965413677776747649999999999999999973998
No 9
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=1.00 E-value=1 Score=222.61 Aligned_cols=193 Identities=23% Similarity=0.377 Sum_probs=147.3
Q ss_pred HHHHHCCCCEEEEEECC------------------------------CEEEEEEEEECCCEEEECCCCCCCCCCCCEECC
Q ss_conf 67875048469999789------------------------------826899999189769962643466667530005
Q 004596 385 LPIQKALASVCLITIDD------------------------------GVWASGVLLNDQGLILTNAHLLEPWRFGKTTVS 434 (743)
Q Consensus 385 ~~i~~a~~SVV~I~~~~------------------------------~~wGSGviIs~~GlILTNaHVV~p~~~~~t~~~ 434 (743)
.+++++.||||.|.+.. ..+||||+|+++||||||+||++
T Consensus 8 ~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsG~iI~~~g~ILTnaHvv~---------- 77 (239)
T 1l1j_A 8 NVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFDPEGYILTNYHVVG---------- 77 (239)
T ss_dssp HHHHHHGGGEEEEEEECC--CCCCCHHHHHHHHHHCTTSCTTHHHHEEEEEEEEEEETTTEEEEEHHHHS----------
T ss_pred HHHHHHCCCEEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEECHHHHC----------
T ss_conf 9999728978999989730355666544224454303555555545671699999908989998848839----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEE
Q ss_conf 88666455888887889876542233468999998533564110000002334578426999974798731595699974
Q 004596 435 GWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYV 514 (743)
Q Consensus 435 G~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~~~~~l~~~~~~~I~V~l~~~~~~~W~~a~VV~v 514 (743)
+. ..++|++.++.. +++++++
T Consensus 78 ~~-------------------------------------------------------~~i~V~~~~g~~---~~a~vv~- 98 (239)
T 1l1j_A 78 GA-------------------------------------------------------DNITVTMLDGSK---YDAEYIG- 98 (239)
T ss_dssp SC-------------------------------------------------------SSCEEECTTSCE---EEBCCCE-
T ss_pred CC-------------------------------------------------------CEEEEEECCCCE---EEEEEEE-
T ss_conf 99-------------------------------------------------------779999899989---9999999-
Q ss_pred CCCCCCEEEEEECCCCCCCCCEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 599970799998358999630347999-9999996999911998899899990675799414421688777665556888
Q 004596 515 CKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSA 593 (743)
Q Consensus 515 ~~~~~DIALLkle~~p~~l~pi~l~~s-~i~~Ge~V~vIGyplf~~~~G~~psvt~GiIS~vv~~~~~~~~~~~~~~~~~ 593 (743)
.+..+||||||++.....++++.++++ .+..|+.|+++||| .+...+++.|++++..+..... .....
T Consensus 99 ~d~~~DlAllkl~~~~~~~~~~~l~~s~~~~~G~~v~~iG~p-----~g~~~~vt~Givs~~~r~~~~~------~~~~~ 167 (239)
T 1l1j_A 99 GDEELDIAVIKIKASDKKFPYLEFGDSDKVKIGEWAIAIGNP-----LGFQHTVTVGVVSATNRRIPKP------DGSGY 167 (239)
T ss_dssp EETTTTEEEEEBCCSSSCCCCCEECCGGGCCTTCEEEEEECT-----TSSSCEEEEEEEEEEEEEEECT------TSSCE
T ss_pred ECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECC-----CCCCCCEEEEEEECCCCCCCCC------CCCCC
T ss_conf 828888899997677788746985475678426579999888-----8878838788992044123568------87665
Q ss_pred CCEEEEECCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCC
Q ss_conf 6709999113479986662012795199999622038999656731699814579999999996077
Q 004596 594 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQE 660 (743)
Q Consensus 594 ~~~~IqTtAav~pGnSGGPLin~~G~VIGIvtsna~~~gg~~~p~lnFaIPi~~l~~il~~l~~~~d 660 (743)
+..++|+++++++|+|||||+|.+|+||||+++... .++. .+++|+||++.++++++++..++.
T Consensus 168 ~~~~i~tda~i~~G~SGGPLv~~~G~vvGI~s~~~~-~~~~--~g~~faIP~~~~~~~~~~l~~~g~ 231 (239)
T 1l1j_A 168 YVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVN-PQEA--VNLGFAIPINTVKKFLDTILTQKK 231 (239)
T ss_dssp EEEEEEESSCCCTTTTTSEEECSSSEEEEEECCCSC-CCSC--CSCEEEEEHHHHHHHHGGGCC---
T ss_pred CCCEEEECCCCCCCCCCHHHCCCCCEEEEEEEEEEC-CCCC--CCEEEEEEHHHHHHHHHHHHHCCC
T ss_conf 578999878889987418812599819999965616-8885--756999999999999999997798
No 10
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=1.00 E-value=1 Score=220.77 Aligned_cols=195 Identities=23% Similarity=0.369 Sum_probs=153.8
Q ss_pred CCHHHHHCCCCEEEEEECC-----------CEEEEEEEEECCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9067875048469999789-----------82689999918976996264346666753000588666455888887889
Q 004596 383 SPLPIQKALASVCLITIDD-----------GVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSG 451 (743)
Q Consensus 383 ~p~~i~~a~~SVV~I~~~~-----------~~wGSGviIs~~GlILTNaHVV~p~~~~~t~~~G~~~~~~~~~~~~~~~~ 451 (743)
...+++++.+|||.|.+.. ..+||||+|+++||||||+||+. +
T Consensus 11 ~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~----------~---------------- 64 (318)
T 1te0_A 11 YNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIN----------D---------------- 64 (318)
T ss_dssp CHHHHHHHGGGEEEEEEEEECSSSSCCEEEEEEEEEEECSTTCEEEEEHHHHT----------T----------------
T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEECHHHCC----------C----------------
T ss_conf 89999860896899996753677655656685279999908989998878969----------9----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCCC
Q ss_conf 87654223346899999853356411000000233457842699997479873159569997459997079999835899
Q 004596 452 HTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPD 531 (743)
Q Consensus 452 ~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~~~~~l~~~~~~~I~V~l~~~~~~~W~~a~VV~v~~~~~DIALLkle~~p~ 531 (743)
...+.|++.++.. +++++++ .+..+|||||+++. +.
T Consensus 65 ---------------------------------------~~~i~V~~~~g~~---~~a~v~~-~d~~~DlAllk~~~-~~ 100 (318)
T 1te0_A 65 ---------------------------------------ADQIIVALQDGRV---FEALLVG-SDSLTDLAVLIIKA-TG 100 (318)
T ss_dssp ---------------------------------------CSEEEEECTTSCE---EEEEEEE-EETTTTEEEEECCC-SS
T ss_pred ---------------------------------------CCEEEEEECCCCE---EEEEEEE-ECCCCEEEEEEEEC-CC
T ss_conf ---------------------------------------9879999479989---9899997-07896289999927-88
Q ss_pred CCCCEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 9630347999-999999699991199889989999067579941442168877766555688867099991134799866
Q 004596 532 QLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSG 610 (743)
Q Consensus 532 ~l~pi~l~~s-~i~~Ge~V~vIGyplf~~~~G~~psvt~GiIS~vv~~~~~~~~~~~~~~~~~~~~~IqTtAav~pGnSG 610 (743)
.++++.+.++ .+..|+.|+++||| ++...+++.|+|+...+.. + . ......++|+++++++|+||
T Consensus 101 ~~~~~~l~~~~~~~~G~~v~~~G~p-----~g~~~~~~~g~vs~~~~~~---~-----~-~~~~~~~i~~d~~~~~G~SG 166 (318)
T 1te0_A 101 GLPTIPINARRVPHIGDVVLAIGNP-----YNLGQTITQGIISATGRIG---L-----N-PTGRQNFLQTDASINHGNSG 166 (318)
T ss_dssp CCCCCCCCTTCCCCTTCEEEEECCC-----SSSSCCEEEEEEEECCCCC---C-----C-TTCSCCSEEESSCCCTTTTT
T ss_pred CCCEEEEECCCCCCCCCEEEEEECC-----CCCCCCEEEEEEECCCCCC---C-----C-CCCCCCEEEECCCCCCCCCC
T ss_conf 9865774075678889999999918-----9878708736983144554---3-----7-88867889999877899873
Q ss_pred CCEECCCCEEEEEEEEEECCCC-CCCCCCEEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 6201279519999962203899-96567316998145799999999960772
Q 004596 611 GAVVNLDGHMIGLVTSNARHGG-GTVIPHLNFSIPCAVLRPIFEFARDMQEV 661 (743)
Q Consensus 611 GPLin~~G~VIGIvtsna~~~g-g~~~p~lnFaIPi~~l~~il~~l~~~~d~ 661 (743)
|||||.+|+||||+++.....+ +....+++|+||++.++++++++...+.+
T Consensus 167 GPl~~~~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g~~ 218 (318)
T 1te0_A 167 GALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRV 218 (318)
T ss_dssp SEEECTTCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHSSC
T ss_pred CCEECCCCEEEEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 7258899829999855303677666644248853699999999999974975
Done!