BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004597
(743 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 166 GKPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGT 225
KP T +L +LK L HQ+ W F PVD VK+N+PDYY IIK PMD GT
Sbjct: 13 NKPKRQTNQLQYLL----RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGT 68
Query: 226 IKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFF 273
IK+++ +N Y + E + D F+N YN PG+D +MA+ L K F
Sbjct: 69 IKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 116
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 57/89 (64%)
Query: 185 TLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLAD 244
+LK L HQ+ W F PVD VK+N+PDYY IIK PMD GTIK+++ +N Y + E + D
Sbjct: 32 VVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQD 91
Query: 245 VRLTFSNAMTYNPPGNDFHIMADTLRKFF 273
F+N YN PG+D +MA+ L K F
Sbjct: 92 FNTMFTNCYIYNKPGDDIVLMAEALEKLF 120
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 166 GKPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGT 225
KP T +L +LK L HQ+ W F PVD VK+N+PDYY IIK PMD GT
Sbjct: 13 NKPKRETNQLQYLL----RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGT 68
Query: 226 IKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFF 273
IK+++ +N Y + E + D F+N YN PG+D +MA+ L K F
Sbjct: 69 IKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 116
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 166 GKPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGT 225
KP T +L +LK L HQ+ W F PVD VK+N+PDYY IIK PMD GT
Sbjct: 33 NKPKRQTNQLQYLL----RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGT 88
Query: 226 IKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFF 273
IK+++ +N Y + E + D F+N YN PG+D +MA+ L K F
Sbjct: 89 IKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 136
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
+K C +LK L+S + Y W F PVD + + DY+ IIKHPMD T+K KM + Y
Sbjct: 3 LKHCNVILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 62
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
EF ADVRL FSN YNPP +D MA L+ FE R+
Sbjct: 63 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRY 103
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 96.3 bits (238), Expect = 6e-20, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
+K C +LK L+S + Y W F PVD + + DY+ IIKHPMD T+K KM + Y
Sbjct: 7 LKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 66
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
EF ADVRL FSN YNPP +D MA L+ FE R+
Sbjct: 67 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRY 107
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 95.9 bits (237), Expect = 8e-20, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
+K C +LK L+S + Y W F PVD + + DY+ IIKHPMD T+K KM + Y
Sbjct: 9 LKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 68
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
EF ADVRL FSN YNPP +D MA L+ FE R+
Sbjct: 69 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRY 109
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 184 ETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLA 243
+ ++K L HQ+ W F PVD VK+ +PDY+ IIK PMD GTIK ++ +N Y + E +
Sbjct: 38 KVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQ 97
Query: 244 DVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI---EKKLPVTKPQSLPEKSA 297
D F+N YN P +D +MA TL K F + ++ E++L VT P++ +K A
Sbjct: 98 DFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPKNSHKKGA 154
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 184 ETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLA 243
+ ++K L HQ+ W F PVD VK+ +PDY+ IIK PMD GTIK ++ +N Y + E +
Sbjct: 38 KVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQ 97
Query: 244 DVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI---EKKLPVTKPQS 291
D F+N YN P +D +MA TL K F + ++ E++L VT P S
Sbjct: 98 DFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPNS 148
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 55/90 (61%)
Query: 184 ETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLA 243
+ +LK L H + W F PVD VK+ +PDYYTIIK+PMD TIK+++ + Y+ E +
Sbjct: 19 KVVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIE 78
Query: 244 DVRLTFSNAMTYNPPGNDFHIMADTLRKFF 273
D FSN YN PG+D +MA L K F
Sbjct: 79 DFNTMFSNCYLYNKPGDDIVLMAQALEKLF 108
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 185 TLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLAD 244
++K L HQ+ W F PVD +K+N+PDY+ IIK+PMD GTIK+++ +N Y S E + D
Sbjct: 28 VVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQD 87
Query: 245 VRLTFSNAMTYNPPGNDFHIMADTLRKFF 273
F+N YN P +D +MA L K F
Sbjct: 88 FNTMFTNCYIYNKPTDDIVLMAQALEKIF 116
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 185 TLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLAD 244
++K L HQ+ W F PVD +K+N+PDY+ IIK+PMD GTIK+++ +N Y S E + D
Sbjct: 26 VVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQD 85
Query: 245 VRLTFSNAMTYNPPGNDFHIMADTLRKFF 273
F+N YN P +D +MA L K F
Sbjct: 86 FNTMFTNCYIYNKPTDDIVLMAQALEKIF 114
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 185 TLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLAD 244
++K L HQ+ W F PVD +K+N+PDY+ IIK+PMD GTIK+++ +N Y S E + D
Sbjct: 24 VVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQD 83
Query: 245 VRLTFSNAMTYNPPGNDFHIMADTLRKFF 273
F+N YN P +D +MA L K F
Sbjct: 84 FNTMFTNCYIYNKPTDDIVLMAQALEKIF 112
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
+K C +LK + + + Y W F PVDV + + DY IIKHPMD TIK K+ + Y
Sbjct: 3 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 62
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
EF ADVRL FSN YNPP ++ MA L+ FE R+
Sbjct: 63 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 103
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
++ C+++L+ ++S + Y W F PVD + + DY+ IIKHPMD T+K KM Y
Sbjct: 14 LRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYP 73
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
F ADVRL FSN YNPP ++ MA L+ FE R+
Sbjct: 74 DAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 114
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 89.4 bits (220), Expect = 8e-18, Method: Composition-based stats.
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
++ C+++L+ ++S + Y W F PVD + + DY+ IIKHPMD T+K KM Y
Sbjct: 9 LRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYP 68
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
F ADVRL FSN YNPP ++ MA L+ FE R+
Sbjct: 69 DAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 109
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 89.0 bits (219), Expect = 8e-18, Method: Composition-based stats.
Identities = 46/101 (45%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
+K C +LK + + + Y W F PVDV + + DY IIKHPMD TIK K+ S Y
Sbjct: 11 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYR 70
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
EF ADVRL FSN YNPP ++ MA L+ FE R+
Sbjct: 71 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 111
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 89.0 bits (219), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
+K C +LK +++ + Y W F PVD + + +YY ++K+PMD GTIK KM + Y
Sbjct: 16 LKHCSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYK 75
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI 280
EF ADVRL F N YNPP ++ MA TL+ FE + I
Sbjct: 76 DAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKI 119
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%)
Query: 185 TLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLAD 244
+LK L H + W F PVD VK+ +PDYYTIIK PMD TIK+++ + Y E + D
Sbjct: 21 VVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIED 80
Query: 245 VRLTFSNAMTYNPPGNDFHIMADTLRKFF 273
FSN YN G+D +MA L K F
Sbjct: 81 FNTMFSNCYLYNKTGDDIVVMAQALEKLF 109
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 85.9 bits (211), Expect = 8e-17, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
+K C +LK + + + Y W F PVDV + + DY IIKHPMD TIK K+ + Y
Sbjct: 22 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 81
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
EF ADVRL FSN YNPP ++ MA L+ FE R+
Sbjct: 82 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 122
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 85.9 bits (211), Expect = 8e-17, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
+K C +LK + + + Y W F PVDV + + DY IIKHPMD TIK K+ + Y
Sbjct: 24 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 83
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
EF ADVRL FSN YNPP ++ MA L+ FE R+
Sbjct: 84 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 124
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 184 ETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLA 243
+ + K L HQ+ W F PVD VK+ +PDY+ IIK P D GTIK ++ +N Y + E
Sbjct: 12 KVVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQ 71
Query: 244 DVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI---EKKLPVTKPQS 291
D F+N YN P +D + A TL K F + + E++L VT P++
Sbjct: 72 DFNTXFTNCYIYNKPTDDIVLXAQTLEKIFLQKVASXPQEEQELVVTIPKN 122
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 184 ETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLA 243
+ + K L HQ+ W F PVD VK+ +PDY+ IIK P D GTIK ++ +N Y + E
Sbjct: 18 KVVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQ 77
Query: 244 DVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI---EKKLPVTKPQS 291
D F+N YN P +D + A TL K F + + E++L VT P++
Sbjct: 78 DFNTXFTNCYIYNKPTDDIVLXAQTLEKIFLQKVASXPQEEQELVVTIPKN 128
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 180 MKQCETLLKRLMSHQ---YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236
+K C +LK + + Y W F PVDV + + DY IIKHP D TIK K+ S Y
Sbjct: 9 LKCCSGILKEXFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYR 68
Query: 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
EF ADVRL FSN YNPP ++ A L+ FE R+
Sbjct: 69 DAQEFGADVRLXFSNCYKYNPPDHEVVAXARKLQDVFEXRF 109
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 181 KQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASN--AYSSP 238
++CE LL L H+ F PV + +PDYY IIK+PMD TIK+++ + YS P
Sbjct: 23 RKCERLLLFLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 79
Query: 239 LEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI--EKKLPVTKPQS 291
+F+AD RL F N +N P ++ L +FE K + EK+ P + P S
Sbjct: 80 EDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRFPKSGPSS 134
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 181 KQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLE 240
KQC+ L+ + + F PVD+V+ PDY II PMDFGT++E + + Y SPLE
Sbjct: 13 KQCKELVNLIFQCEDSEPFRQPVDLVEY--PDYRDIIDTPMDFGTVRETLDAGNYDSPLE 70
Query: 241 FLADVRLTFSNAMTYNP-PGNDFHIMADTLRKFFEARWKAIEKKLPV 286
F D+RL FSNA Y P + + M L FE + K I +
Sbjct: 71 FCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDFKI 117
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSP 238
L +++L+++ SHQ W F PV + P YY +I+ PMD T+ E++ + Y S
Sbjct: 16 LYSTLKSILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNRYYVSK 73
Query: 239 LEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWK 278
F+AD++ F+N YNPP ++++ A+ L KFF ++ K
Sbjct: 74 KLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIK 113
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 183 CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFL 242
C +L + +H+ W F PV++ K+ +P Y +IK PMDF TI+EK++S Y + F
Sbjct: 18 CSMILTEMETHEDAWPFLLPVNL-KL-VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFA 75
Query: 243 ADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
DVRL F N T+N +D +RK+FE +W
Sbjct: 76 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 110
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSP 238
L +++L+++ SHQ W F PV + P YY +I+ PMD T+ E++ + Y S
Sbjct: 14 LYSTLKSILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNRYYVSK 71
Query: 239 LEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWK 278
F+AD++ F+N YNPP ++++ A+ L KFF ++ K
Sbjct: 72 KLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIK 111
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 183 CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFL 242
C +L + +H+ W F PV++ K+ +P Y +IK PMDF TI+EK++S Y + F
Sbjct: 15 CSMILTEMETHEDAWPFLLPVNL-KL-VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFA 72
Query: 243 ADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARW 277
DVRL F N T+N +D +RK+FE +W
Sbjct: 73 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 107
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 181 KQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASN--AYSSP 238
++CE LL L H+ F PV + +PDYY IIK+PMD TIK+++ + YS P
Sbjct: 84 RKCERLLLFLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 140
Query: 239 LEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI 280
+F+AD RL F N +N P ++ L +FE K +
Sbjct: 141 EDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 182
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADV 245
+L+ L +H+ W F PVD + PDYY +IK PMD T++E++ Y EF+AD+
Sbjct: 80 VLRSLQAHKMAWPFLEPVD--PNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 246 RLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIE 281
F N YNP + F+ A+ L FF + K +
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 72.4 bits (176), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADV 245
+L+ L +H+ W F PVD + PDYY +IK PMD T++E++ Y EF+AD+
Sbjct: 80 VLRSLQAHKMAWPFLEPVD--PNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 246 RLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIE 281
F N YNP + F+ A+ L FF + K +
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 181 KQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLE 240
KQCE LL + + F PVD+ + PDY II PMDF T++E + + Y SP+E
Sbjct: 24 KQCEELLNLIFQCEDSEPFRQPVDL--LEYPDYRDIIDTPMDFATVRETLEAGNYESPME 81
Query: 241 FLADVRLTFSNAMTYNPPGND-FHIMADTLRKFFE 274
DVRL FSN+ Y P + M+ L FFE
Sbjct: 82 LCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFE 116
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 184 ETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLA 243
+ +L L +H W F PV+ K +PDYY IK PMD T++ K+ SN Y +F+
Sbjct: 19 QNILTELQNHAAAWPFLQPVN--KEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIY 76
Query: 244 DVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI 280
D RL F+N YN ++ A+ L KFF + K I
Sbjct: 77 DARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEI 113
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADV 245
+L+ L +H+ W F PVD + PDYY +IK PMD T++E++ Y EF+AD+
Sbjct: 28 VLRSLQAHKMAWPFLEPVD--PNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 85
Query: 246 RLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIE 281
F N YNP + F+ A+ L FF + K +
Sbjct: 86 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 121
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADV 245
+L+ L +H+ W F PVD + PDYY +IK PMD T++E++ Y EF+AD+
Sbjct: 21 VLRSLQAHKMAWPFLEPVD--PNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 246 RLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIE 281
F N YNP + F+ A+ L FF + K +
Sbjct: 79 TAIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 114
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADV 245
+L+ L +H+ W F PVD + PDYY +IK PMD T++E++ Y EF+AD+
Sbjct: 21 VLRSLQAHKMAWPFLEPVD--PNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 246 RLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIE 281
F N YNP + F+ A+ L FF + K +
Sbjct: 79 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 114
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADV 245
+L+ L +H+ W F PVD + PDYY +IK P D T +E++ Y EF+AD
Sbjct: 80 VLRSLQAHKXAWPFLEPVD--PNDAPDYYGVIKEPXDLATXEERVQRRYYEKLTEFVADX 137
Query: 246 RLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIE 281
F N YNP + F+ A+ L FF + K +
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSP 238
L + LL ++ SH W F PV K PDYY +I+ P+D T+ E++ S Y +
Sbjct: 4 LYTTLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 61
Query: 239 LEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWK 278
F+AD++ +N YNPP +++ A L KFF + K
Sbjct: 62 KLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLK 101
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 184 ETLLKRLMSHQYGWVFNTPV-DVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFL 242
E L++L F PV D + P Y IIKHPMDFGT+K+K+ +N Y S EF
Sbjct: 19 EHFLRQLQRKDPHGFFAFPVTDAIA---PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFK 75
Query: 243 ADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEK 282
AD +L NAMTYN P ++ +A +K A +K + K
Sbjct: 76 ADFKLMCDNAMTYNRPDTVYYKLA---KKILHAGFKMMSK 112
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSP 238
L + LL ++ SH W F PV K PDYY +I+ P+D T+ E++ S Y +
Sbjct: 8 LYTTLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 65
Query: 239 LEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWK 278
F+AD++ +N YNPP +++ A L KFF + K
Sbjct: 66 KLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLK 105
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 181 KQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMA---SNAYSS 237
++CE LL L H+ F PV +IP+YY IIK PMD T+K+K+ S Y
Sbjct: 84 RKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQI 140
Query: 238 PLEFLADVRLTFSNAMTYNPPGNDFHIMADT 268
P +F+ADVRL F N +N + ADT
Sbjct: 141 PDDFVADVRLIFKNCERFNEMMKVVQVYADT 171
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 199 FNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258
F PVD + IPDY+ I+K+PMD TIK K+ + Y P +++ DV L F+NA YN
Sbjct: 35 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 94
Query: 259 GNDFHIMADTLRKFFE 274
+ + L + FE
Sbjct: 95 TSRVYKFCSKLAEVFE 110
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 199 FNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258
F PVD + IPDY+ I+K+PMD TIK K+ + Y P +++ DV L F+NA YN
Sbjct: 33 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 92
Query: 259 GNDFHIMADTLRKFFE 274
+ + L + FE
Sbjct: 93 TSRVYKFCSKLAEVFE 108
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADV 245
L+ L ++ G +F VD K N PDYY +IK+P F IK K+ Y+ P EF+ DV
Sbjct: 29 LILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDV 88
Query: 246 RLTFSNAMTYNPPGNDFHIMADTLRKFF 273
+L F N YN + I + +F
Sbjct: 89 QLIFDNCSLYNTSNSVVAITGKNIETYF 116
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 199 FNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258
F PVD + IPDY+ I+K PMD TIK K+ + Y P +++ D+ L F+NA YN
Sbjct: 38 FRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRK 97
Query: 259 GNDFHIMADTLRKFFE 274
+ + L + FE
Sbjct: 98 TSRVYKYCSKLSEVFE 113
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 188 KRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRL 247
+++M+ W F+ PV+ K +PDYY +I +PMD TI++ ++ + Y S FL DV L
Sbjct: 180 QKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 237
Query: 248 TFSNAMTYNPPGNDF 262
+N++ YN P + +
Sbjct: 238 ILANSVKYNGPESQY 252
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 197 WVFNTPVD--VVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254
+ F+TPV+ VVK DYY II PMD T++E + Y S EF + L N+ T
Sbjct: 66 YPFHTPVNAKVVK----DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSAT 121
Query: 255 YNPPGNDFHIMADTLRKFFEARWKAIEKKL 284
YN P + ++ ++ + + K E KL
Sbjct: 122 YNGPKHSLTQISQSMLDLCDEKLKEKEDKL 151
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 188 KRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRL 247
+++M+ W F+ PV+ K +PDYY +I +PMD TI++ ++ + Y S FL DV L
Sbjct: 147 QKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 204
Query: 248 TFSNAMTYNPPGNDF 262
+N++ YN P + +
Sbjct: 205 ILANSVKYNGPESQY 219
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 197 WVFNTPVD--VVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254
+ F+TPV+ VVK DYY II PMD T++E + Y S EF + L N+ T
Sbjct: 33 YPFHTPVNAKVVK----DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSAT 88
Query: 255 YNPPGNDFHIMADTLRKFFEARWKAIEKKL 284
YN P + ++ ++ + + K E KL
Sbjct: 89 YNGPKHSLTQISQSMLDLCDEKLKEKEDKL 118
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 188 KRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRL 247
+++M+ W F+ PV+ K +PDYY +I +PMD TI++ ++ + Y S FL DV L
Sbjct: 159 QKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 216
Query: 248 TFSNAMTYNPPGNDF 262
+N++ YN P + +
Sbjct: 217 ILANSVKYNGPESQY 231
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 197 WVFNTPVD--VVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254
+ F+TPV+ VVK DYY II PMD T++E + Y S EF + L N+ T
Sbjct: 45 YPFHTPVNAKVVK----DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSAT 100
Query: 255 YNPPGNDFHIMADTLRKFFEARWKAIEKKL 284
YN P + ++ ++ + + K E KL
Sbjct: 101 YNGPKHSLTQISQSMLDLCDEKLKEKEDKL 130
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 207 KMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMA 266
K+ PDYY IIK P+D TI +++ + +Y S D+ L NA TYN PG+ A
Sbjct: 42 KVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDA 101
Query: 267 DTLRKFFEARWKAIE 281
++++K F + IE
Sbjct: 102 NSIKKIFYMKKAEIE 116
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 207 KMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMA 266
K+ PDYY IIK P+D TI +++ + +Y S D+ L NA TYN PG+ A
Sbjct: 41 KVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDA 100
Query: 267 DTLRKFFEARWKAIE 281
++++K F + IE
Sbjct: 101 NSIKKIFYMKKAEIE 115
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADV 245
+L + +H+ W F PVD + P+YY IIK PMD ++++K+ Y + EF+ D+
Sbjct: 24 VLDVVKAHKDSWPFLEPVD--ESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDM 81
Query: 246 RLTFSNAMTYNPPGNDFHIMADTLRKFF 273
+ F N YN +++ M+D L + F
Sbjct: 82 KTMFRNCRKYNGESSEYTKMSDNLERCF 109
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 207 KMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMA 266
K+ PDYY IIK P+D TI +++ + +Y S D+ L NA TYN PG+ A
Sbjct: 39 KVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDA 98
Query: 267 DTLRKFFEARWKAIE 281
++++K F + IE
Sbjct: 99 NSIKKIFYMKKAEIE 113
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 188 KRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRL 247
+++M+ W F+ PV+ K +PDYY +I +PMD TI++ ++ + Y S FL DV L
Sbjct: 40 QKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 97
Query: 248 TFSNAMTYNPPGNDF 262
+N++ YN P + +
Sbjct: 98 ILANSVKYNGPESQY 112
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 186 LLKRLMSHQYGWVFNTPV-DVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLAD 244
L+++L F+ PV D + P Y IIKHPMDF T+KEK+ +N Y S E +
Sbjct: 16 LMRQLQRKDPSAFFSFPVTDFIA---PGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDN 72
Query: 245 VRLTFSNAMTYNPPGNDFHIMADTL 269
+L +NAM YN P ++ A L
Sbjct: 73 FKLMCTNAMIYNKPETIYYKAAKKL 97
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 170 STTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEK 229
S+ +G +IL+++ L++L G +F+ PV + + +PDY IK PMDF T+K+
Sbjct: 2 SSGSSGFLILLRKT---LEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQN 56
Query: 230 MASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRK 271
+ + Y + +F D L SN + YN F+ A LR+
Sbjct: 57 LEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLRE 98
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 151 SRGWNRGTSGRFESAGKPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNI 210
S G + GT + + + + N++ +++M+ W F+ PV+ K +
Sbjct: 8 SSGVDLGTENLYFQSMQVAFSFILDNIVT--------QKMMAVPDSWPFHHPVN--KKFV 57
Query: 211 PDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDF 262
PDYY +I +P+D TI++ ++ + Y S FL DV L +N++ YN P + +
Sbjct: 58 PDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQY 109
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 188 KRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRL 247
KRL + + +F+ PVD+ + + DY +IK PMD T+ K+ + Y + +FL D+ L
Sbjct: 22 KRLATDKRFNIFSKPVDIEE--VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDL 79
Query: 248 TFSNAMTYNP---PGN 260
SNA+ YNP PG+
Sbjct: 80 ICSNALEYNPDKDPGD 95
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 185 TLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLAD 244
++L +L +F PV + + +PDY IKHPMDF T+++++ + Y + EF D
Sbjct: 20 SVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEED 77
Query: 245 VRLTFSNAMTYNPPGNDFHIMADTLRK-----FFEARWKAIEKKLPVTKPQSLPEKSA 297
L N M YN F+ A LR +AR + L LPE+ A
Sbjct: 78 FDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASGMHLPERPA 135
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 198 VFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257
VF PVD +PDY T+IK PMD ++ K+ + Y + ++L D+ L SNA+ YNP
Sbjct: 30 VFTKPVD--PDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNP 87
Query: 258 ---PGN 260
PG+
Sbjct: 88 DRDPGD 93
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 210 IPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTL 269
+P+YY +I+ P+DF IKE++ ++ Y S + DV L NA T+N G+ + + L
Sbjct: 48 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 107
Query: 270 RKFFEARWKAIEK 282
+ F + + IEK
Sbjct: 108 QSVFTSVRQKIEK 120
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 210 IPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTL 269
+P+YY +I+ P+DF IKE++ ++ Y S + DV L NA T+N G+ + + L
Sbjct: 44 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 103
Query: 270 RKFFEARWKAIEK 282
+ F + + IEK
Sbjct: 104 QSVFTSVRQKIEK 116
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 210 IPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTL 269
+P+YY +I+ P+DF IKE++ ++ Y S + DV L NA T+N G+ + + L
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 108
Query: 270 RKFFEARWKAIEK 282
+ F + + IEK
Sbjct: 109 QSVFTSVRQKIEK 121
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 207 KMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG----NDF 262
K + PDYY II PMD I+ + ++ Y+ + D++L F NA YN G ND
Sbjct: 58 KKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDA 117
Query: 263 HIMADTLR 270
HI+ L+
Sbjct: 118 HILEKLLK 125
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 210 IPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTL 269
+PDYY IK PMD I+ M +N Y + D + F+NA TYN P + + A L
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 270 RK-FFEAR 276
K E R
Sbjct: 111 HKVLLETR 118
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 188 KRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRL 247
KRL + + +F+ PV DY +IK PMD T+ K+ + Y + +FL D+ L
Sbjct: 22 KRLATDKRFNIFSKPVS-------DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDL 74
Query: 248 TFSNAMTYNP---PGN 260
SNA+ YNP PG+
Sbjct: 75 ICSNALEYNPDKDPGD 90
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 210 IPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTL 269
+P+YY +I+ P+DF IKE++ ++ Y S + DV L NA T+N G+ + + L
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVL 108
Query: 270 RKFFEA 275
+ F++
Sbjct: 109 QSVFKS 114
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 210 IPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTL 269
+P+YY I+ PM +K+ + YS +F+ D+ L F NA +N P + A TL
Sbjct: 243 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 302
Query: 270 RKFF 273
+F
Sbjct: 303 TNYF 306
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 210 IPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258
+PDYY IK PMD I+ M +N Y + D + F+NA TYN P
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEP 99
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 210 IPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTL 269
+P+YY I+ PM +K+ + YS +F+ D+ L F NA +N P + A TL
Sbjct: 228 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 287
Query: 270 RKFF 273
+F
Sbjct: 288 TNYF 291
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 207 KMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMA 266
K PDYY IK P+ I+ K+ + Y + D+ L F NA YN P + +
Sbjct: 50 KKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRV 109
Query: 267 DTLRKFFEARWKAIEKK 283
L++ +A+ K + ++
Sbjct: 110 LKLQQVMQAKKKELARR 126
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 210 IPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTL 269
+P+YY I+ P +K+ + YS +F+ D L F NA +N P + A TL
Sbjct: 187 LPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 246
Query: 270 RKFF 273
+F
Sbjct: 247 TNYF 250
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 210 IPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTL 269
+P+YY I+ P +K+ + YS +F+ D L F NA +N P + A TL
Sbjct: 193 LPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 252
Query: 270 RKFF 273
+F
Sbjct: 253 TNYF 256
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 207 KMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258
+ N PDYY ++ P+D I++K+ Y AD +L F+NA +Y P
Sbjct: 38 RRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKP 89
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 208 MNIP------DYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY----NP 257
+N+P DYY I P+D TI++++ + Y + F AD+ F NA Y +P
Sbjct: 37 LNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSP 96
Query: 258 PGNDFHIMADTLRKFFEARWKA 279
G D + + ++ AR +A
Sbjct: 97 VGRD---VCRLRKAYYNARHEA 115
>pdb|3BVN|A Chain A, High Resolution Crystal Structure Of Hla-B1402 In Complex
With The Latent Membrane Protein 2 Peptide (Lmp2) Of
Epstein-Barr Virus
pdb|3BVN|D Chain D, High Resolution Crystal Structure Of Hla-B1402 In Complex
With The Latent Membrane Protein 2 Peptide (Lmp2) Of
Epstein-Barr Virus
pdb|3BXN|A Chain A, The High Resolution Crystal Structure Of Hla-b*1402
Complexed With A Cathepsin A Signal Sequence Peptide,
Pcata
Length = 278
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 335 QEKHNLGRELESLLAEMPVHIIDFLREHSSNGRET 369
Q K RE E L A + +++LR H NG+ET
Sbjct: 145 QRKWEAAREAEQLRAYLEGTCVEWLRRHLENGKET 179
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 49 KCINLNPDKWDAFGVPLQVLSLPNLSRSERKDLVHKLTSDLE 90
K +NL P W A GVPL +L E+K ++ K DLE
Sbjct: 466 KNLNLKPTDWIAGGVPLTMLMNMEERYGEKKPVIKKALVDLE 507
>pdb|1E27|A Chain A, Nonstandard Peptide Binding Of Hla-B5101 Complexed With
Hiv Immunodominant Epitope Km1(Lppvvakei)
Length = 276
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 335 QEKHNLGRELESLLAEMPVHIIDFLREHSSNGRET 369
Q K RE E L A + +++LR H NG+ET
Sbjct: 144 QRKWEAAREAEQLRAYLEGLCVEWLRRHLENGKET 178
>pdb|3W39|A Chain A, Crystal Structure Of Hla-b*5201 In Complexed With Hiv
Immunodominant Epitope (taftipsi)
pdb|3W39|D Chain D, Crystal Structure Of Hla-b*5201 In Complexed With Hiv
Immunodominant Epitope (taftipsi)
Length = 277
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 335 QEKHNLGRELESLLAEMPVHIIDFLREHSSNGRET 369
Q K RE E L A + +++LR H NG+ET
Sbjct: 145 QRKWEAAREAEQLRAYLEGLCVEWLRRHLENGKET 179
>pdb|1E28|A Chain A, Nonstandard Peptide Binding Of Hla-B5101 Complexed With
Hiv Immunodominant Epitope Km2(Taftipsi)
Length = 276
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 335 QEKHNLGRELESLLAEMPVHIIDFLREHSSNGRET 369
Q K RE E L A + +++LR H NG+ET
Sbjct: 144 QRKWEAAREAEQLRAYLEGLCVEWLRRHLENGKET 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,140,274
Number of Sequences: 62578
Number of extensions: 665357
Number of successful extensions: 1014
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 90
length of query: 743
length of database: 14,973,337
effective HSP length: 106
effective length of query: 637
effective length of database: 8,340,069
effective search space: 5312623953
effective search space used: 5312623953
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)