Query 004597
Match_columns 743
No_of_seqs 378 out of 1484
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 01:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 9.4E-45 2E-49 421.2 27.9 571 5-681 47-632 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 6.9E-27 1.5E-31 218.5 12.5 106 177-284 4-110 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 1E-26 2.3E-31 214.0 13.0 104 177-280 2-106 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 1.2E-26 2.6E-31 213.3 11.8 101 179-279 5-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 4.6E-26 1E-30 205.9 10.8 95 180-276 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 6.7E-26 1.5E-30 205.0 11.0 98 180-277 2-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.3E-25 2.8E-30 202.8 10.9 96 180-277 2-97 (97)
8 cd05498 Bromo_Brdt_II_like Bro 99.9 1.7E-25 3.6E-30 203.6 10.7 98 180-277 2-102 (102)
9 cd05504 Bromo_Acf1_like Bromod 99.9 3E-25 6.5E-30 206.5 12.2 103 176-280 10-112 (115)
10 cd05507 Bromo_brd8_like Bromod 99.9 4.2E-25 9E-30 202.1 12.0 101 177-279 2-102 (104)
11 cd05499 Bromo_BDF1_2_II Bromod 99.9 3.2E-25 6.9E-30 201.9 11.1 98 180-277 2-102 (102)
12 cd05500 Bromo_BDF1_2_I Bromodo 99.9 6.3E-25 1.4E-29 200.4 12.1 100 177-276 3-102 (103)
13 cd05501 Bromo_SP100C_like Brom 99.9 1.1E-24 2.3E-29 198.2 12.5 97 179-280 3-99 (102)
14 cd05502 Bromo_tif1_like Bromod 99.9 1.3E-24 2.9E-29 200.2 13.3 101 177-280 3-106 (109)
15 cd05509 Bromo_gcn5_like Bromod 99.9 1.4E-24 3.1E-29 197.1 11.0 99 179-279 2-100 (101)
16 cd05510 Bromo_SPT7_like Bromod 99.9 1.9E-24 4.1E-29 200.2 11.9 102 177-280 6-109 (112)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 1.7E-24 3.7E-29 196.3 11.4 97 177-276 2-98 (99)
18 cd05513 Bromo_brd7_like Bromod 99.9 9.3E-24 2E-28 191.2 10.6 92 179-272 2-93 (98)
19 cd05516 Bromo_SNF2L2 Bromodoma 99.9 7.8E-24 1.7E-28 194.7 10.2 99 179-279 2-106 (107)
20 cd05512 Bromo_brd1_like Bromod 99.9 1.5E-23 3.4E-28 189.8 10.5 92 179-272 2-93 (98)
21 cd05528 Bromo_AAA Bromodomain; 99.9 3.2E-23 7E-28 192.1 11.8 101 178-280 3-107 (112)
22 cd05511 Bromo_TFIID Bromodomai 99.9 3.3E-23 7.2E-28 192.0 11.4 101 182-284 4-104 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 7.5E-23 1.6E-27 186.8 10.1 96 180-277 2-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 1.4E-22 3E-27 185.7 10.3 97 180-278 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 2.2E-22 4.8E-27 186.8 11.0 99 180-280 4-108 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 5.9E-22 1.3E-26 187.7 13.1 104 174-278 20-126 (128)
27 smart00297 BROMO bromo domain. 99.9 6.9E-22 1.5E-26 179.8 11.7 102 176-279 5-106 (107)
28 cd05520 Bromo_polybromo_III Br 99.9 6.1E-22 1.3E-26 181.0 10.1 92 183-276 5-102 (103)
29 cd05517 Bromo_polybromo_II Bro 99.9 6.1E-22 1.3E-26 181.0 10.0 94 180-275 2-101 (103)
30 cd05525 Bromo_ASH1 Bromodomain 99.9 1.2E-21 2.6E-26 179.9 10.5 96 179-276 3-104 (106)
31 cd05518 Bromo_polybromo_IV Bro 99.9 1.1E-21 2.4E-26 179.2 9.9 94 181-276 3-102 (103)
32 PF00439 Bromodomain: Bromodom 99.8 9.5E-21 2.1E-25 165.1 9.4 84 183-268 1-84 (84)
33 cd04369 Bromodomain Bromodomai 99.8 1.4E-20 3E-25 166.3 10.0 96 180-277 2-99 (99)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.8 1.6E-20 3.4E-25 171.9 10.2 93 181-275 4-102 (104)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 2.9E-20 6.4E-25 170.7 10.6 96 179-278 2-103 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.5E-19 3.3E-24 166.6 12.0 98 184-281 6-107 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 1.9E-16 4.2E-21 145.9 10.7 100 178-281 3-108 (110)
38 KOG1245 Chromatin remodeling c 99.7 1.2E-16 2.6E-21 197.7 8.2 95 183-280 1306-1400(1404)
39 COG5076 Transcription factor i 99.7 2.6E-16 5.5E-21 173.7 9.9 104 177-282 141-250 (371)
40 KOG1472 Histone acetyltransfer 99.5 4.7E-14 1E-18 163.3 6.7 101 178-280 606-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.3 4.9E-13 1.1E-17 124.6 4.0 81 178-258 3-90 (114)
42 cd05491 Bromo_TBP7_like Bromod 99.0 5E-10 1.1E-14 104.3 4.4 42 218-259 62-103 (119)
43 KOG0955 PHD finger protein BR1 98.9 1.7E-09 3.7E-14 130.7 7.6 102 177-280 564-665 (1051)
44 KOG0008 Transcription initiati 98.7 1.8E-08 3.9E-13 121.6 6.1 95 181-277 1385-1479(1563)
45 KOG1474 Transcription initiati 98.6 8.6E-09 1.9E-13 121.4 1.3 92 188-279 2-93 (640)
46 KOG1827 Chromatin remodeling c 98.6 6.1E-08 1.3E-12 111.8 7.8 99 177-277 51-155 (629)
47 KOG0386 Chromatin remodeling c 98.6 4.8E-08 1E-12 115.8 7.1 100 181-282 1027-1132(1157)
48 KOG0008 Transcription initiati 98.5 1.3E-07 2.7E-12 114.6 7.8 102 179-282 1262-1363(1563)
49 KOG1472 Histone acetyltransfer 98.4 2.2E-07 4.8E-12 108.7 5.1 75 177-260 292-366 (720)
50 KOG1828 IRF-2-binding protein 97.8 3E-06 6.4E-11 92.3 -0.4 94 182-277 23-116 (418)
51 COG5076 Transcription factor i 97.8 7E-06 1.5E-10 91.2 1.4 170 79-279 192-362 (371)
52 KOG1828 IRF-2-binding protein 97.7 1.8E-05 3.8E-10 86.4 3.4 83 186-271 216-298 (418)
53 KOG1029 Endocytic adaptor prot 96.5 0.0089 1.9E-07 70.4 8.9 69 579-655 329-408 (1118)
54 cd05493 Bromo_ALL-1 Bromodomai 95.5 0.023 4.9E-07 54.6 5.5 61 220-280 59-119 (131)
55 PF11600 CAF-1_p150: Chromatin 95.5 0.16 3.4E-06 52.8 12.0 8 712-719 206-213 (216)
56 PTZ00266 NIMA-related protein 94.8 0.32 6.9E-06 60.8 13.9 32 234-273 206-237 (1021)
57 PLN03086 PRLI-interacting fact 94.7 0.085 1.8E-06 61.8 8.0 77 597-674 5-85 (567)
58 PF13904 DUF4207: Domain of un 92.5 4 8.7E-05 43.8 15.4 19 612-630 112-130 (264)
59 PTZ00266 NIMA-related protein 92.2 0.97 2.1E-05 56.7 11.7 25 67-95 45-69 (1021)
60 PF09726 Macoilin: Transmembra 91.1 4.3 9.3E-05 49.3 15.3 44 563-606 428-474 (697)
61 KOG0163 Myosin class VI heavy 90.5 0.83 1.8E-05 54.5 8.2 19 381-399 771-789 (1259)
62 KOG1029 Endocytic adaptor prot 88.7 1.7 3.7E-05 52.1 8.9 28 633-660 401-430 (1118)
63 KOG0644 Uncharacterized conser 86.4 0.47 1E-05 57.1 2.8 59 217-275 1050-1108(1113)
64 KOG2891 Surface glycoprotein [ 85.3 4.3 9.3E-05 43.6 8.9 17 600-616 332-348 (445)
65 KOG1144 Translation initiation 85.2 3.1 6.8E-05 50.2 8.6 19 599-617 227-245 (1064)
66 KOG0163 Myosin class VI heavy 84.6 3.8 8.1E-05 49.3 8.8 9 632-640 957-965 (1259)
67 PTZ00121 MAEBL; Provisional 84.5 4 8.7E-05 52.2 9.4 10 178-187 356-365 (2084)
68 KOG0732 AAA+-type ATPase conta 84.1 0.56 1.2E-05 58.4 2.1 64 196-259 533-601 (1080)
69 KOG2072 Translation initiation 82.4 2.6 5.7E-05 51.0 6.5 70 586-659 572-645 (988)
70 KOG1363 Predicted regulator of 82.1 4.9 0.00011 46.5 8.5 10 641-650 355-364 (460)
71 KOG2002 TPR-containing nuclear 81.0 5.8 0.00013 49.0 8.8 32 212-243 262-294 (1018)
72 TIGR03825 FliH_bacil flagellar 77.3 13 0.00029 39.5 9.4 83 569-651 4-92 (255)
73 KOG4364 Chromatin assembly fac 75.1 13 0.00027 44.5 9.0 22 577-603 247-268 (811)
74 PRK09510 tolA cell envelope in 74.5 17 0.00037 41.2 9.7 8 611-618 107-114 (387)
75 KOG3375 Phosphoprotein/predict 73.6 12 0.00027 36.7 7.1 79 572-653 86-169 (174)
76 KOG2140 Uncharacterized conser 73.5 3.2 6.9E-05 48.2 3.6 14 29-42 3-16 (739)
77 PLN02316 synthase/transferase 71.5 9.2 0.0002 48.4 7.3 20 371-390 98-118 (1036)
78 PF09726 Macoilin: Transmembra 70.6 16 0.00035 44.5 8.9 10 602-611 491-500 (697)
79 KOG3116 Predicted C3H1-type Zn 69.9 5.7 0.00012 39.1 4.0 7 505-511 146-152 (177)
80 KOG1144 Translation initiation 69.6 18 0.00039 44.1 8.6 32 599-630 235-266 (1064)
81 PRK00409 recombination and DNA 69.3 24 0.00053 43.6 10.2 32 330-361 222-253 (782)
82 PF03154 Atrophin-1: Atrophin- 68.9 2.9 6.2E-05 51.6 2.1 48 595-651 578-625 (982)
83 KOG3054 Uncharacterized conser 68.1 29 0.00064 36.9 8.9 14 649-662 173-186 (299)
84 PF05672 MAP7: MAP7 (E-MAP-115 67.1 34 0.00074 34.7 8.9 24 596-619 44-67 (171)
85 PF05262 Borrelia_P83: Borreli 63.2 28 0.00062 40.7 8.6 17 382-398 77-93 (489)
86 KOG2891 Surface glycoprotein [ 62.9 43 0.00094 36.3 9.1 18 603-620 350-367 (445)
87 KOG2412 Nuclear-export-signal 62.8 32 0.0007 40.4 8.8 26 597-622 202-231 (591)
88 PRK06569 F0F1 ATP synthase sub 62.5 79 0.0017 31.6 10.4 97 576-675 36-134 (155)
89 PF07946 DUF1682: Protein of u 62.4 28 0.00061 38.4 8.2 8 371-378 110-117 (321)
90 PF07888 CALCOCO1: Calcium bin 60.9 27 0.00058 41.4 7.9 103 567-675 334-451 (546)
91 PLN03086 PRLI-interacting fact 60.7 12 0.00027 44.3 5.2 50 588-640 16-65 (567)
92 PF05672 MAP7: MAP7 (E-MAP-115 60.3 1.6E+02 0.0034 30.0 12.1 25 596-620 36-60 (171)
93 COG3064 TolA Membrane protein 59.8 56 0.0012 36.1 9.4 6 608-613 133-138 (387)
94 TIGR01069 mutS2 MutS2 family p 59.5 53 0.0012 40.7 10.6 32 330-361 217-248 (771)
95 TIGR01069 mutS2 MutS2 family p 58.3 47 0.001 41.2 9.8 8 576-583 497-504 (771)
96 KOG3054 Uncharacterized conser 57.7 46 0.00099 35.6 8.1 40 596-641 118-157 (299)
97 PF06936 Selenoprotein_S: Sele 57.3 55 0.0012 33.8 8.6 18 640-657 107-124 (190)
98 KOG2140 Uncharacterized conser 57.2 8.2 0.00018 45.1 2.8 6 355-360 488-493 (739)
99 COG4942 Membrane-bound metallo 57.0 1.1E+02 0.0023 35.3 11.5 14 335-348 59-72 (420)
100 KOG2133 Transcriptional corepr 56.3 7.2 0.00016 48.1 2.3 55 592-653 807-861 (1229)
101 KOG4220 Muscarinic acetylcholi 56.3 2.6E+02 0.0055 32.6 14.1 15 641-655 409-423 (503)
102 PHA03308 transcriptional regul 56.1 8.1 0.00018 46.2 2.7 12 591-602 1351-1362(1463)
103 PRK06800 fliH flagellar assemb 55.0 89 0.0019 32.2 9.3 24 632-655 76-99 (228)
104 PF07946 DUF1682: Protein of u 54.4 56 0.0012 36.1 8.8 9 573-581 242-250 (321)
105 PHA03308 transcriptional regul 54.2 9.9 0.00022 45.6 3.0 15 217-231 966-980 (1463)
106 PRK06568 F0F1 ATP synthase sub 54.0 91 0.002 31.1 9.3 13 641-653 109-121 (154)
107 KOG2357 Uncharacterized conser 53.5 29 0.00063 39.5 6.3 50 577-626 351-400 (440)
108 KOG0644 Uncharacterized conser 53.3 7.9 0.00017 47.3 2.0 63 199-263 86-178 (1113)
109 KOG2072 Translation initiation 53.1 74 0.0016 39.3 9.8 24 608-631 794-817 (988)
110 PRK09174 F0F1 ATP synthase sub 53.1 1.3E+02 0.0029 31.1 10.8 11 576-586 79-89 (204)
111 KOG1150 Predicted molecular ch 50.9 98 0.0021 32.3 9.0 9 591-599 149-157 (250)
112 COG3064 TolA Membrane protein 50.7 47 0.001 36.7 7.1 6 600-605 107-112 (387)
113 PRK06231 F0F1 ATP synthase sub 50.1 1E+02 0.0022 32.0 9.3 12 641-652 153-164 (205)
114 PRK00409 recombination and DNA 49.3 87 0.0019 38.9 10.1 48 576-625 502-549 (782)
115 PF07218 RAP1: Rhoptry-associa 49.1 1.6E+02 0.0036 35.0 11.4 19 609-627 241-259 (782)
116 PF10252 PP28: Casein kinase s 48.6 72 0.0016 28.6 6.8 33 594-626 23-56 (82)
117 PLN02316 synthase/transferase 48.1 39 0.00085 43.1 7.0 20 620-639 270-289 (1036)
118 PF13904 DUF4207: Domain of un 47.8 3.8E+02 0.0082 28.9 13.6 12 644-655 178-189 (264)
119 KOG4661 Hsp27-ERE-TATA-binding 46.9 85 0.0018 37.2 8.7 11 436-446 357-367 (940)
120 PRK13454 F0F1 ATP synthase sub 46.5 1.5E+02 0.0033 30.0 9.8 19 637-655 132-150 (181)
121 KOG0982 Centrosomal protein Nu 46.5 99 0.0021 35.6 9.0 22 199-220 68-89 (502)
122 PRK14472 F0F1 ATP synthase sub 46.5 1.7E+02 0.0037 29.2 10.1 16 643-658 134-149 (175)
123 PRK06568 F0F1 ATP synthase sub 44.4 2.2E+02 0.0047 28.5 10.2 28 632-659 89-116 (154)
124 PRK13455 F0F1 ATP synthase sub 44.0 2.7E+02 0.0058 28.1 11.1 10 577-586 54-63 (184)
125 PRK07352 F0F1 ATP synthase sub 43.9 1.5E+02 0.0033 29.6 9.3 10 577-586 46-55 (174)
126 CHL00019 atpF ATP synthase CF0 43.8 1.5E+02 0.0032 30.0 9.3 11 576-586 50-60 (184)
127 COG4290 Guanyl-specific ribonu 43.8 14 0.0003 35.9 1.7 31 7-37 100-136 (152)
128 KOG2412 Nuclear-export-signal 43.7 76 0.0016 37.5 7.8 17 612-628 213-229 (591)
129 KOG2357 Uncharacterized conser 42.6 85 0.0018 35.9 7.8 28 603-630 389-417 (440)
130 PRK01558 V-type ATP synthase s 41.9 2.2E+02 0.0047 29.3 10.2 32 629-660 53-84 (198)
131 KOG3654 Uncharacterized CH dom 41.9 1E+02 0.0022 36.1 8.3 10 666-675 457-466 (708)
132 PF15236 CCDC66: Coiled-coil d 41.6 1.4E+02 0.003 30.0 8.3 12 596-607 70-81 (157)
133 PRK13460 F0F1 ATP synthase sub 41.2 2.4E+02 0.0052 28.2 10.2 18 642-659 131-148 (173)
134 PRK13454 F0F1 ATP synthase sub 41.2 2.2E+02 0.0048 28.8 10.0 11 576-586 57-67 (181)
135 KOG1646 40S ribosomal protein 41.2 91 0.002 32.4 7.1 42 592-633 180-222 (237)
136 PRK00247 putative inner membra 40.8 1.2E+02 0.0025 35.2 8.8 15 333-347 80-94 (429)
137 PRK14471 F0F1 ATP synthase sub 40.7 2.2E+02 0.0047 28.1 9.8 12 641-652 113-124 (164)
138 CHL00118 atpG ATP synthase CF0 40.7 2.6E+02 0.0056 27.4 10.2 10 574-583 58-67 (156)
139 cd03405 Band_7_HflC Band_7_Hfl 40.4 1.8E+02 0.0039 30.1 9.6 12 664-675 228-239 (242)
140 PRK08476 F0F1 ATP synthase sub 39.9 2.4E+02 0.0051 27.4 9.7 19 636-654 96-114 (141)
141 PF14372 DUF4413: Domain of un 39.5 88 0.0019 28.6 6.2 49 232-280 3-51 (101)
142 PRK14474 F0F1 ATP synthase sub 39.5 1.7E+02 0.0038 31.2 9.4 18 642-659 120-137 (250)
143 KOG1363 Predicted regulator of 39.2 66 0.0014 37.5 6.6 23 601-623 298-320 (460)
144 PRK09173 F0F1 ATP synthase sub 39.0 2.4E+02 0.0052 27.6 9.7 12 642-653 108-119 (159)
145 PF05110 AF-4: AF-4 proto-onco 38.5 47 0.001 42.9 5.7 20 80-99 49-68 (1191)
146 PRK13453 F0F1 ATP synthase sub 38.4 2.8E+02 0.0061 27.7 10.2 11 642-652 124-134 (173)
147 KOG2129 Uncharacterized conser 38.1 1.8E+02 0.0039 33.5 9.3 67 596-662 257-325 (552)
148 TIGR03321 alt_F1F0_F0_B altern 37.9 1.9E+02 0.0042 30.6 9.4 8 667-674 153-160 (246)
149 PTZ00436 60S ribosomal protein 37.1 1.2E+02 0.0025 33.5 7.5 44 608-651 145-191 (357)
150 PRK11546 zraP zinc resistance 37.0 1.2E+02 0.0027 29.9 7.1 51 549-599 34-93 (143)
151 PRK06231 F0F1 ATP synthase sub 36.7 2.9E+02 0.0062 28.6 10.2 7 578-584 76-82 (205)
152 KOG3634 Troponin [Cytoskeleton 36.2 1.1E+02 0.0023 34.2 7.1 35 589-623 86-120 (361)
153 KOG1827 Chromatin remodeling c 36.2 5.2 0.00011 47.7 -2.9 74 197-272 214-287 (629)
154 PF12052 VGCC_beta4Aa_N: Volta 35.9 38 0.00083 26.5 2.7 16 643-658 24-39 (42)
155 PRK13428 F0F1 ATP synthase sub 35.8 1.7E+02 0.0037 33.9 9.3 18 642-659 116-133 (445)
156 PF06785 UPF0242: Uncharacteri 35.4 3.5E+02 0.0077 30.4 10.8 54 605-661 136-189 (401)
157 KOG2130 Phosphatidylserine-spe 35.1 25 0.00053 38.9 2.1 17 234-250 157-173 (407)
158 PRK01885 greB transcription el 35.1 63 0.0014 32.1 4.9 26 595-620 13-38 (157)
159 KOG2689 Predicted ubiquitin re 34.9 1.4E+02 0.003 32.6 7.6 9 557-565 82-90 (290)
160 TIGR01932 hflC HflC protein. H 34.3 2.4E+02 0.0053 31.0 9.8 8 650-657 288-295 (317)
161 PF03154 Atrophin-1: Atrophin- 34.1 22 0.00048 44.3 1.8 38 623-660 589-630 (982)
162 KOG2130 Phosphatidylserine-spe 33.8 30 0.00064 38.3 2.5 10 271-280 162-171 (407)
163 PF06936 Selenoprotein_S: Sele 33.6 1.8E+02 0.004 30.0 8.0 18 590-607 71-88 (190)
164 PRK06569 F0F1 ATP synthase sub 33.4 2.8E+02 0.0061 27.8 9.1 7 660-666 107-113 (155)
165 PRK12585 putative monovalent c 33.4 74 0.0016 32.9 5.1 16 594-609 128-143 (197)
166 PRK13460 F0F1 ATP synthase sub 33.2 3.1E+02 0.0066 27.4 9.5 12 644-655 113-124 (173)
167 PF06991 Prp19_bind: Splicing 33.0 3.9E+02 0.0085 29.2 10.8 8 650-657 140-147 (276)
168 PF09831 DUF2058: Uncharacteri 32.7 1.1E+02 0.0024 31.2 6.3 23 636-658 61-83 (177)
169 PF00836 Stathmin: Stathmin fa 32.5 56 0.0012 32.2 3.9 33 620-652 52-84 (140)
170 PF07795 DUF1635: Protein of u 32.5 2.6E+02 0.0056 29.5 8.9 55 602-656 4-60 (214)
171 PRK01005 V-type ATP synthase s 32.3 3.5E+02 0.0075 28.3 10.0 12 647-658 76-87 (207)
172 PRK07352 F0F1 ATP synthase sub 32.0 3.4E+02 0.0074 27.0 9.7 12 572-583 53-64 (174)
173 PF06637 PV-1: PV-1 protein (P 31.3 4E+02 0.0087 30.5 10.6 38 575-622 292-334 (442)
174 KOG3654 Uncharacterized CH dom 31.0 1.2E+02 0.0025 35.7 6.6 12 267-278 116-127 (708)
175 PRK13453 F0F1 ATP synthase sub 30.9 4.2E+02 0.0091 26.5 10.1 17 641-657 132-148 (173)
176 KOG4364 Chromatin assembly fac 30.9 1.7E+02 0.0036 35.6 8.0 12 633-644 341-352 (811)
177 PF09731 Mitofilin: Mitochondr 30.6 2.8E+02 0.0061 32.9 10.2 19 645-663 339-357 (582)
178 PF06658 DUF1168: Protein of u 30.0 3.8E+02 0.0082 26.5 9.2 40 577-630 39-78 (142)
179 PF11596 DUF3246: Protein of u 29.6 30 0.00065 36.4 1.6 13 469-481 228-240 (241)
180 KOG2117 Uncharacterized conser 29.4 1.1E+02 0.0023 34.6 5.9 40 599-640 81-124 (379)
181 KOG0577 Serine/threonine prote 29.3 1.2E+03 0.025 28.9 16.2 12 388-399 253-264 (948)
182 TIGR03321 alt_F1F0_F0_B altern 28.9 4.3E+02 0.0092 28.0 10.2 6 644-649 113-118 (246)
183 KOG4807 F-actin binding protei 28.0 1.6E+02 0.0034 33.7 6.8 62 340-403 203-264 (593)
184 PRK14475 F0F1 ATP synthase sub 27.7 5E+02 0.011 25.8 9.9 13 641-653 115-127 (167)
185 PF05262 Borrelia_P83: Borreli 27.7 1.7E+02 0.0037 34.4 7.5 11 665-675 331-341 (489)
186 KOG4691 Uncharacterized conser 27.7 3.7E+02 0.0081 28.0 8.9 12 649-660 162-173 (227)
187 PRK14474 F0F1 ATP synthase sub 27.7 4.6E+02 0.01 28.0 10.2 10 643-652 112-121 (250)
188 PRK14475 F0F1 ATP synthase sub 27.7 5.2E+02 0.011 25.6 10.1 19 641-659 124-142 (167)
189 KOG1150 Predicted molecular ch 27.5 2E+02 0.0042 30.2 6.9 9 636-644 184-192 (250)
190 PRK13461 F0F1 ATP synthase sub 27.1 4.5E+02 0.0097 25.7 9.4 10 643-652 112-121 (159)
191 KOG1420 Ca2+-activated K+ chan 27.0 41 0.00089 39.8 2.3 11 608-618 91-101 (1103)
192 PRK13461 F0F1 ATP synthase sub 27.0 5.9E+02 0.013 24.9 10.2 8 646-653 124-131 (159)
193 PRK05759 F0F1 ATP synthase sub 26.9 5.8E+02 0.013 24.6 10.2 16 642-657 119-134 (156)
194 PRK03963 V-type ATP synthase s 26.5 4.3E+02 0.0093 26.7 9.4 7 665-671 103-109 (198)
195 PRK05892 nucleoside diphosphat 26.0 1.6E+02 0.0035 29.3 6.0 27 595-622 14-40 (158)
196 KOG2002 TPR-containing nuclear 25.6 3.4E+02 0.0073 34.5 9.6 13 618-630 849-861 (1018)
197 KOG2391 Vacuolar sorting prote 25.6 2.7E+02 0.0058 31.3 8.0 38 620-660 233-270 (365)
198 CHL00019 atpF ATP synthase CF0 25.5 6.1E+02 0.013 25.5 10.2 11 573-583 59-69 (184)
199 TIGR02606 antidote_CC2985 puta 25.4 1.1E+02 0.0023 26.4 4.0 27 224-250 12-38 (69)
200 PF05501 DUF755: Domain of unk 25.4 51 0.0011 31.7 2.3 6 355-360 54-59 (123)
201 KOG0971 Microtubule-associated 25.4 1.5E+03 0.033 29.0 15.0 7 669-675 346-352 (1243)
202 TIGR01933 hflK HflK protein. H 24.8 4.3E+02 0.0093 27.8 9.4 9 667-675 228-236 (261)
203 KOG2656 DNA methyltransferase 24.5 2.1E+02 0.0046 32.7 7.1 58 570-627 173-242 (445)
204 PF15346 ARGLU: Arginine and g 23.9 3.1E+02 0.0067 27.4 7.4 12 607-618 40-51 (149)
205 PF15295 CCDC50_N: Coiled-coil 23.6 6.3E+02 0.014 24.8 9.2 38 618-656 82-119 (132)
206 TIGR01462 greA transcription e 23.6 1.3E+02 0.0029 29.5 4.9 18 595-612 8-25 (151)
207 PRK13428 F0F1 ATP synthase sub 23.5 5E+02 0.011 30.2 10.2 15 640-654 105-119 (445)
208 COG4942 Membrane-bound metallo 23.2 1.7E+02 0.0037 33.8 6.2 16 592-607 199-214 (420)
209 PF09805 Nop25: Nucleolar prot 23.1 3.2E+02 0.0069 26.6 7.3 7 617-623 38-44 (137)
210 PF05835 Synaphin: Synaphin pr 23.0 1.3E+02 0.0027 29.7 4.5 16 638-653 54-69 (139)
211 PF00769 ERM: Ezrin/radixin/mo 23.0 4.6E+02 0.01 28.0 9.1 22 608-629 45-66 (246)
212 PRK07353 F0F1 ATP synthase sub 23.0 6.5E+02 0.014 23.8 10.0 12 645-656 103-114 (140)
213 cd03404 Band_7_HflK Band_7_Hfl 22.8 3.2E+02 0.0069 28.9 8.0 8 611-618 193-200 (266)
214 KOG3756 Pinin (desmosome-assoc 22.7 6.8E+02 0.015 28.0 10.2 20 565-584 123-142 (340)
215 KOG2505 Ankyrin repeat protein 22.7 1.6E+02 0.0034 34.7 5.8 39 613-657 506-544 (591)
216 PRK06669 fliH flagellar assemb 22.7 5.9E+02 0.013 27.4 10.1 47 571-622 76-122 (281)
217 KOG2441 mRNA splicing factor/p 22.6 1.4E+02 0.0031 34.0 5.3 55 597-651 309-370 (506)
218 PRK09174 F0F1 ATP synthase sub 22.4 7.3E+02 0.016 25.8 10.2 11 573-583 88-98 (204)
219 PF07218 RAP1: Rhoptry-associa 22.2 4.9E+02 0.011 31.3 9.5 16 602-617 252-267 (782)
220 PRK12472 hypothetical protein; 21.9 3.8E+02 0.0082 31.6 8.6 56 596-651 229-302 (508)
221 PRK13455 F0F1 ATP synthase sub 21.8 7.2E+02 0.016 25.0 9.9 12 641-652 132-143 (184)
222 COG4741 Predicted secreted end 21.8 4E+02 0.0086 26.9 7.6 12 608-619 43-54 (175)
223 PF09727 CortBP2: Cortactin-bi 21.8 5.9E+02 0.013 26.5 9.2 58 600-658 85-155 (192)
224 PF06098 Radial_spoke_3: Radia 21.7 5.6E+02 0.012 28.3 9.6 12 550-561 121-132 (291)
225 COG4372 Uncharacterized protei 21.7 1.6E+02 0.0035 33.5 5.5 35 615-654 79-113 (499)
226 PF06785 UPF0242: Uncharacteri 21.1 4.9E+02 0.011 29.3 8.8 10 651-660 202-211 (401)
227 KOG2507 Ubiquitin regulatory p 20.8 2.3E+02 0.005 32.8 6.5 27 597-623 219-245 (506)
228 TIGR01932 hflC HflC protein. H 20.8 5.9E+02 0.013 28.0 9.8 8 668-675 287-294 (317)
229 PF12848 ABC_tran_2: ABC trans 20.6 5.5E+02 0.012 22.0 9.6 32 597-628 18-49 (85)
230 TIGR01461 greB transcription e 20.5 3.4E+02 0.0075 26.9 7.1 25 595-622 11-35 (156)
231 PF03879 Cgr1: Cgr1 family; I 20.4 5.5E+02 0.012 24.3 7.9 6 564-569 19-24 (108)
232 PF12037 DUF3523: Domain of un 20.4 5.4E+02 0.012 28.2 9.0 63 595-660 159-221 (276)
233 TIGR01216 ATP_synt_epsi ATP sy 20.3 2E+02 0.0044 27.4 5.3 23 588-610 83-105 (130)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=9.4e-45 Score=421.25 Aligned_cols=571 Identities=25% Similarity=0.342 Sum_probs=361.7
Q ss_pred CCCCCCCcccccccccCCC-CCCCCCCCc-cccccccccCCCcccCccccCCCCCCCCCCcceeeeeCCCCCHHHHHHHH
Q 004597 5 NDRFSGGYYRSNAFETTGE-SEGSGSSGR-IDAEITASEDSSAPTRKCINLNPDKWDAFGVPLQVLSLPNLSRSERKDLV 82 (743)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~~s~~~~r~~~~~n~~~~~~f~v~~~~~~ls~~s~~e~~~L~ 82 (743)
+.-|+++++. .+|.+++. ++.++.++. |..--.+++....++.+|..+.......++++..++++..++..++++|.
T Consensus 47 n~~~~~~~~~-~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (640)
T KOG1474|consen 47 NYYFSASECI-ADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKLS 125 (640)
T ss_pred CccccHhhhh-hhccccccchhcccCCccchhhccccchhhcccccccccccccCCcccccccccCcCCCCchhhhhhhh
Confidence 5667777766 79999986 555555554 44444588888899999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccC-Ccccccc-CCCCCCCcccccccc----cccccCCCCCCCCCCCC---CCC
Q 004597 83 HKLTSDLEQIRILQKKAGVQRTNGVTVSS-SSDILSC-SNGPNRPKVQNSRKS----LVMTCGPGKKVNPVSNN---SRG 153 (743)
Q Consensus 83 ~rl~~Ele~VR~l~~ki~~~~~~~~~~~~-~s~~~s~-~~~~~~~~~~~~~~s----~~~~~~~~kk~~~~pg~---~~~ 153 (743)
.||+.+|++||.+.++++.+ ....+.++ ..+..+. ++...........+. .....+++.++...-+. .+.
T Consensus 126 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (640)
T KOG1474|consen 126 ERLKQELQQVRPLTKAVEFS-PEPSVVSPVSPASQPFKSKNGVKKVADTCVKSYKSKSEREPSPGQKREGTVAPNSSRES 204 (640)
T ss_pred hccccccccCCccccccccc-ccccccCCCCCcccccccccchhhhhccccccccccCcCCCCccccccccccCcccccc
Confidence 99999999999999999822 21222211 1111100 000000000000000 00011111111110000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcC
Q 004597 154 WNRGTSGRFESAGKPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASN 233 (743)
Q Consensus 154 ~~~~~~gr~~~~~~~~~~~~~~~~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~ 233 (743)
+ .... . ............++++|..||..||+|+++|+|+.|||++.+++||||+||+|||||+|||+||.++
T Consensus 205 ~-----~~~~-~-~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~ 277 (640)
T KOG1474|consen 205 G-----DSAA-E-EEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKG 277 (640)
T ss_pred c-----cccc-c-ccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhccc
Confidence 0 0000 0 1111224567899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCcchhhhhhhcCCcccc
Q 004597 234 AYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKSAPRANVETAKAIPPAKR 313 (743)
Q Consensus 234 ~Y~S~~eF~~DVrLIF~NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~P~~kk 313 (743)
.|.++.+|++||||||.|||+||++||+||.||..|+.+|+.+|+.+..++............... ............
T Consensus 278 ~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 355 (640)
T KOG1474|consen 278 EYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMAS--SDQIPSNSVEGP 355 (640)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc--ccccccccccCc
Confidence 999999999999999999999999999999999999999999999874443211110000000000 000000000111
Q ss_pred cchhcccccCCCCCCCCCCCHHHHHHHHHHHhhhcccChHHHHHHHHhhcCCCCCCCCCeEEEecCCCCHHHHHHHHHHH
Q 004597 314 KKIEIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLL 393 (743)
Q Consensus 314 rK~s~~~~~~~~ep~~r~MT~eEK~kL~~~I~~Lp~E~l~~II~II~~~~p~l~~~~~dEIEIDId~L~~~TL~eL~~yV 393 (743)
++..........++....|+.+|+..+...+..++.+...+++..++............++++++..+... |.+....
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~ 433 (640)
T KOG1474|consen 356 RSSSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTG--KLIKEKN 433 (640)
T ss_pred ccccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchh--hhhhhhh
Confidence 22222222223344567899999999999999999999999999988765443333345666666665544 3332111
Q ss_pred --HHHHHHHhhhccCCCchhhhhhhcccCCCCccccCCCCCCCCccccCCCCCCCCCCCCCccccccccccCCCccCCCC
Q 004597 394 --DDYLEEKQKNQANVEPCEIELLNESGLSNSSMQQGKGNDLPDEDIDIGGNEPPVSSYPPMEIEKDTAIKSSKRVSPGS 471 (743)
Q Consensus 394 --~~~Lkek~K~~~~~ep~E~e~~~~sg~~nss~~~~k~~e~~~Edvdigg~~~p~~~~~Pv~iekd~~~~sS~~sssgS 471 (743)
........+..+..+. ..+.+..+++ .+|...-.+++|.+-
T Consensus 434 ~~~~~~~~~~r~~t~~~~---------------------~~l~~~~~~~---~~p~~l~~~~~~~~~------------- 476 (640)
T KOG1474|consen 434 KKEKAANENKRDMTAPEK---------------------AKLKELLQNL---LPPNKLESIVEILKP------------- 476 (640)
T ss_pred cccccccccccccccccc---------------------ccchhhccCC---CCCccccCcccccch-------------
Confidence 1111111111111110 1122222222 111111111211100
Q ss_pred CCCCCCCCCCCCCCccccCCCCCccCCCCcccCCCCCccccCCCCCCCCcccccccccccccccCCCCCccccccccCCC
Q 004597 472 SSGSESSSSSDSESDDVKASSPVSASKVPKVSGHKDKLDEKTGSGDPLDVNQSVSGLDQLEHTSQQKPSSVESDFRQDGE 551 (743)
Q Consensus 472 SSSS~S~SsSs~sss~s~ss~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 551 (743)
......|.+.....+..-..++. --+
T Consensus 477 --------------------------------------------------~~~~~~l~~~~~~~~~~~~~vd~----~~~ 502 (640)
T KOG1474|consen 477 --------------------------------------------------EKRQLDLSQNDDEIELDLDSVDG----SQS 502 (640)
T ss_pred --------------------------------------------------hhhcccccccccchhhccccccc----ccc
Confidence 00011111111111111111110 000
Q ss_pred CCCCCCCCCchHHHHHhhhcccchhhhHHhhh-hccc-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 552 SAPNERQVSPDKLYRATLLKNRFADTILKAKE-KTLS-QGDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQA 629 (743)
Q Consensus 552 ~~~~~~~~sp~k~~raa~lk~rfadti~ka~~-k~l~-~~~k~dp~kl~~e~e~le~~q~eekar~~a~~~aae~a~r~~ 629 (743)
..++.-+...++.+++..+...|++-+.++++ +.+. .....+|+++....++.+.+.+.++++.++.....+.+++.+
T Consensus 503 ~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 582 (640)
T KOG1474|consen 503 REPSSNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERLSRSISEEKLREKSEKSSSEASSSSSEDGENKA 582 (640)
T ss_pred cCCCcccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccchhhhhhHHhhhhhhHhhhhhhhhhhHHHHhhcc
Confidence 11115567788999999999999999999998 5665 456669999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHhhhhhCCCCCC
Q 004597 630 EADAAVEARRKREVEREAARQALLKMEKTVEINENSRFLEDLEMLRTAPAEQ 681 (743)
Q Consensus 630 ~~~~~~e~~rkre~ereaaR~al~~Mekt~~~~~n~~~~~dle~l~~~~~~~ 681 (743)
.+.+.. .++.++++|+++++++..|+.++++..+..+...++. +..+.++
T Consensus 583 ~~~~~~-~~~s~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~~~~-~ss~~~~ 632 (640)
T KOG1474|consen 583 ASSGSL-SPSSSSLERESNNSAEANGSSSSESSSSSSSSSSEEG-SSSPTES 632 (640)
T ss_pred cccccc-CccccccccchhHHHHhcccCccccccccccchhhcc-CCCCCcc
Confidence 644433 4666899999999999999999999999998887776 4444444
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6.9e-27 Score=218.54 Aligned_cols=106 Identities=37% Similarity=0.604 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004597 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
..|.+.|..||+.|++|+.+|+|..|||+. .+||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004597 257 PP-GNDFHIMADTLRKFFEARWKAIEKKL 284 (743)
Q Consensus 257 ~~-~s~V~~~A~~L~~~Fe~~~k~i~~~~ 284 (743)
++ ++.||.+|..|++.|+++|+.|...+
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999999986544
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1e-26 Score=214.02 Aligned_cols=104 Identities=31% Similarity=0.539 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004597 177 VILMKQCETLLKRLMSH-QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~-~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~Y 255 (743)
.++.+.|..||++|+++ +.+|+|..|||+...++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999 99999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004597 256 NPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 256 N~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
|+++|.+|.+|..|+++|++.++.+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.2e-26 Score=213.29 Aligned_cols=101 Identities=43% Similarity=0.771 Sum_probs=95.6
Q ss_pred HHHH-HHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004597 179 LMKQ-CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (743)
Q Consensus 179 ~~k~-c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~ 257 (743)
.++. +..||..|++|+.+|+|..|||+.+.++||||+||++||||+||++||.++.|.++.+|..||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3444 578899999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 004597 258 PGNDFHIMADTLRKFFEARWKA 279 (743)
Q Consensus 258 ~~s~V~~~A~~L~~~Fe~~~k~ 279 (743)
++|.+|.+|..|+++|+++++.
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998864
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.6e-26 Score=205.90 Aligned_cols=95 Identities=31% Similarity=0.578 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004597 180 MKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (743)
Q Consensus 180 ~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~ 259 (743)
+++|..||+.|++|+.+|+|..||++. .+||||++|++||||+||++||++|.|.|+.+|.+||+|||.||++||+++
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999965 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004597 260 NDFHIMADTLRKFFEAR 276 (743)
Q Consensus 260 s~V~~~A~~L~~~Fe~~ 276 (743)
+.|+.+|..|++.|.+.
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999865
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=6.7e-26 Score=204.96 Aligned_cols=98 Identities=66% Similarity=1.210 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004597 180 MKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (743)
Q Consensus 180 ~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~ 259 (743)
++.|..||+.|++|+.+++|..||++...++|+||++|++||||+||++||+++.|.++.+|..||+|||.||++||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 68999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 004597 260 NDFHIMADTLRKFFEARW 277 (743)
Q Consensus 260 s~V~~~A~~L~~~Fe~~~ 277 (743)
|.+|.+|..|++.|+++|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=202.84 Aligned_cols=96 Identities=43% Similarity=0.799 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004597 180 MKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (743)
Q Consensus 180 ~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~ 259 (743)
+..|..||..|++|+.+++|..||++. .+|+||.+|++||||+||++||.+|.|.|+.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 004597 260 NDFHIMADTLRKFFEARW 277 (743)
Q Consensus 260 s~V~~~A~~L~~~Fe~~~ 277 (743)
+.++.+|..|+++|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.7e-25 Score=203.58 Aligned_cols=98 Identities=49% Similarity=0.897 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004597 180 MKQCETLLKRLMSH---QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 180 ~k~c~~IL~~L~k~---~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
++.|..||+.|+++ +.+++|..||++....+|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 67899999999999 899999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 004597 257 PPGNDFHIMADTLRKFFEARW 277 (743)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~ 277 (743)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999887
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3e-25 Score=206.51 Aligned_cols=103 Identities=39% Similarity=0.722 Sum_probs=99.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004597 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (743)
Q Consensus 176 ~~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~Y 255 (743)
.......|..||..|++|+.+|+|..||+.. ++||||++|++||||+||++||.+|.|.|+.+|..||+|||.||++|
T Consensus 10 ~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~y 87 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLY 87 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999954 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004597 256 NPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 256 N~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
|+++|.+|.+|..|+++|+..|+.+
T Consensus 88 N~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 88 NPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876
No 10
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.2e-25 Score=202.08 Aligned_cols=101 Identities=31% Similarity=0.460 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004597 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
..|.+.|..|++.|++|+.+++|..||++. .+|+||++|++||||+||++||++|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 368899999999999999999999999964 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 004597 257 PPGNDFHIMADTLRKFFEARWKA 279 (743)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~k~ 279 (743)
+++|.||.+|..|+..|...+..
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999877653
No 11
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.2e-25 Score=201.87 Aligned_cols=98 Identities=48% Similarity=0.925 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004597 180 MKQCETLLKRLMSH---QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 180 ~k~c~~IL~~L~k~---~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
++.|..||..|+++ +.+|+|..|||+.+..+||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999995 679999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 004597 257 PPGNDFHIMADTLRKFFEARW 277 (743)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~ 277 (743)
+++|.+|.+|..|++.|+.+|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 12
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.3e-25 Score=200.43 Aligned_cols=100 Identities=40% Similarity=0.555 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004597 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
..+.++|..||+.|++|+.+++|..|||+...++|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.||
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 56789999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 004597 257 PPGNDFHIMADTLRKFFEAR 276 (743)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~ 276 (743)
+++|.++.+|..|++.|++.
T Consensus 83 ~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 83 GPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 13
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.1e-24 Score=198.19 Aligned_cols=97 Identities=30% Similarity=0.446 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004597 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (743)
Q Consensus 179 ~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~ 258 (743)
.++.|+.||..|++|+.+++|..+ |. ++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 467799999999999999999763 33 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 004597 259 GNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 259 ~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
+ .++.+|..|++.|++.|+.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999875
No 14
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.3e-24 Score=200.22 Aligned_cols=101 Identities=41% Similarity=0.721 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHhhh
Q 004597 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMAS---NAYSSPLEFLADVRLTFSNAM 253 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~---~~Y~S~~eF~~DVrLIF~NA~ 253 (743)
..+++.|..||..|++|+.+|+|..||++ .+|+||++|++||||+||++||+. +.|.++.+|.+||+|||.||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999996 599999999999999999999999 599999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004597 254 TYNPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 254 ~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
.||+++|.++.+|..|++.|++.|+.+
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
No 15
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.4e-24 Score=197.12 Aligned_cols=99 Identities=39% Similarity=0.708 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004597 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (743)
Q Consensus 179 ~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~ 258 (743)
+..+|..||+.|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.|+.+|..||+|||.||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999976 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 004597 259 GNDFHIMADTLRKFFEARWKA 279 (743)
Q Consensus 259 ~s~V~~~A~~L~~~Fe~~~k~ 279 (743)
++.++.+|..|++.|+..+++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 16
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.9e-24 Score=200.21 Aligned_cols=102 Identities=31% Similarity=0.466 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004597 177 VILMKQCETLLKRLMSH-QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~-~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~Y 255 (743)
.++...|..||..|++| +.+|+|..||++. .+||||++|++||||+||++||.++.|.|+.+|.+||+|||.||+.|
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999 8999999999965 79999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHH
Q 004597 256 NPPGN-DFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 256 N~~~s-~V~~~A~~L~~~Fe~~~k~i 280 (743)
|++++ .++.+|..|++.|+..++.|
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99765 67899999999999988765
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.7e-24 Score=196.34 Aligned_cols=97 Identities=30% Similarity=0.434 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004597 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
.++...++.++..|+ |+.+|+|..||++. .+||||.+|++||||+||++||.+|.|.++++|.+||+|||.||++||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356677888999999 99999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 004597 257 PPGNDFHIMADTLRKFFEAR 276 (743)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~ 276 (743)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998764
No 18
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=9.3e-24 Score=191.25 Aligned_cols=92 Identities=40% Similarity=0.558 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004597 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (743)
Q Consensus 179 ~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~ 258 (743)
+...|..||+.|++++.+++|..||+.. .+||||++|++||||+||++||+++.|.++.+|..||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5678999999999999999999999954 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004597 259 GNDFHIMADTLRKF 272 (743)
Q Consensus 259 ~s~V~~~A~~L~~~ 272 (743)
+|.+|.+|..|...
T Consensus 80 ~s~~~~~A~~L~~~ 93 (98)
T cd05513 80 DTIYYKAAKKLLHS 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999654
No 19
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=7.8e-24 Score=194.67 Aligned_cols=99 Identities=26% Similarity=0.412 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 004597 179 LMKQCETLLKRLMSHQY------GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (743)
Q Consensus 179 ~~k~c~~IL~~L~k~~~------a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA 252 (743)
+.++|..||+.|+++.. +|+|.+||+. ..+||||.+|++||||+||++||.+|.|.++.+|..||+|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~--~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCc--ccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 57889999999999966 8999999885 489999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 004597 253 MTYNPPGNDFHIMADTLRKFFEARWKA 279 (743)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~~k~ 279 (743)
++||+++|.+|.+|..|+++|++.+++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998865
No 20
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.5e-23 Score=189.83 Aligned_cols=92 Identities=34% Similarity=0.535 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004597 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (743)
Q Consensus 179 ~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~ 258 (743)
+...|+.+|..|+.|+.+|+|..|||+. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4567899999999999999999999965 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004597 259 GNDFHIMADTLRKF 272 (743)
Q Consensus 259 ~s~V~~~A~~L~~~ 272 (743)
++.+|++|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.89 E-value=3.2e-23 Score=192.05 Aligned_cols=101 Identities=38% Similarity=0.523 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004597 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (743)
Q Consensus 178 ~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~ 257 (743)
++...|..|++.|++|+.+|+|..|||+. .+||||++|++||||+||++||.++.|.|+.+|.+||+|||.||+.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 46677899999999999999999999976 7999999999999999999999999999999999999999999999999
Q ss_pred C----CCHHHHHHHHHHHHHHHHHHHH
Q 004597 258 P----GNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 258 ~----~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
+ |+.++.+|..|++.|..++..+
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 9 4799999999999999888754
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.3e-23 Score=191.96 Aligned_cols=101 Identities=35% Similarity=0.614 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004597 182 QCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGND 261 (743)
Q Consensus 182 ~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s~ 261 (743)
..+.|+.+|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+++|.
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4688999999999999999999976 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 004597 262 FHIMADTLRKFFEARWKAIEKKL 284 (743)
Q Consensus 262 V~~~A~~L~~~Fe~~~k~i~~~~ 284 (743)
++.+|..|.+.|+..+..+.+++
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999886654
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=7.5e-23 Score=186.76 Aligned_cols=96 Identities=31% Similarity=0.475 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 004597 180 MKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (743)
Q Consensus 180 ~k~c~~IL~~L~k~------~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~ 253 (743)
.+.|..|++.|+++ +.+++|..||+ +..+|+||++|++||||+||++||..|.|.|+.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~--~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPS--KKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCC--CCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999954 56899999987 45899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q 004597 254 TYNPPGNDFHIMADTLRKFFEARW 277 (743)
Q Consensus 254 ~YN~~~s~V~~~A~~L~~~Fe~~~ 277 (743)
.||++++.+|.+|..|++.|+.+|
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.4e-22 Score=185.74 Aligned_cols=97 Identities=28% Similarity=0.432 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 004597 180 MKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (743)
Q Consensus 180 ~k~c~~IL~~L~k~------~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~ 253 (743)
.++|..|++.|..+ +.+++|..||+. ..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~--~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSK--SEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCc--ccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999886 568999999874 4899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHH
Q 004597 254 TYNPPGNDFHIMADTLRKFFEARWK 278 (743)
Q Consensus 254 ~YN~~~s~V~~~A~~L~~~Fe~~~k 278 (743)
+||+++|.+|.+|..|+++|.+..+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987653
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=2.2e-22 Score=186.78 Aligned_cols=99 Identities=23% Similarity=0.403 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 004597 180 MKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (743)
Q Consensus 180 ~k~c~~IL~~L~k~------~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~ 253 (743)
.++|..|++.|+++ +.+.+|.++++ +..+|+||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 81 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAK 81 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHH
Confidence 68899999999975 34578999866 66899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004597 254 TYNPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 254 ~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
.||+++|.+|.+|..|+++|++.++.+
T Consensus 82 ~yN~~~s~~~~~A~~L~~~f~~~~~~~ 108 (113)
T cd05524 82 AYYKPDSPEHKDACKLWELFLSARNEV 108 (113)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998876
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5.9e-22 Score=187.73 Aligned_cols=104 Identities=27% Similarity=0.368 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHHHHHHHH---cCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004597 174 TGNVILMKQCETLLKRLM---SHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (743)
Q Consensus 174 ~~~~~~~k~c~~IL~~L~---k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~ 250 (743)
..+..+...|..+|.+|+ +++.+++|..||++.. .+|+||++|++||||+||++||.++.|+++.+|..||+|||.
T Consensus 20 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 98 (128)
T cd05529 20 HIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILS 98 (128)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999 8999999999999654 799999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 004597 251 NAMTYNPPGNDFHIMADTLRKFFEARWK 278 (743)
Q Consensus 251 NA~~YN~~~s~V~~~A~~L~~~Fe~~~k 278 (743)
||++||+++|.++.+|..|++.|...+.
T Consensus 99 Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 99 NAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998764
No 27
>smart00297 BROMO bromo domain.
Probab=99.87 E-value=6.9e-22 Score=179.80 Aligned_cols=102 Identities=46% Similarity=0.727 Sum_probs=97.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004597 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (743)
Q Consensus 176 ~~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~Y 255 (743)
...+...|..|+..+.+|+.+++|..||+.. .+|+||.+|++||||+||++||++|.|.++.+|..||++||.||+.|
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999865 69999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 004597 256 NPPGNDFHIMADTLRKFFEARWKA 279 (743)
Q Consensus 256 N~~~s~V~~~A~~L~~~Fe~~~k~ 279 (743)
|++++.++.+|..|...|+..|+.
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=6.1e-22 Score=180.98 Aligned_cols=92 Identities=29% Similarity=0.441 Sum_probs=83.2
Q ss_pred HHHHHHHHHcC------CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004597 183 CETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 183 c~~IL~~L~k~------~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
+..|++.|+.+ +.+++|.+||+ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~--~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPS--KRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCC--cccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34555666555 57899999988 45899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 004597 257 PPGNDFHIMADTLRKFFEAR 276 (743)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~ 276 (743)
+++|.+|.+|..|+++|++.
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=6.1e-22 Score=180.96 Aligned_cols=94 Identities=33% Similarity=0.529 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 004597 180 MKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (743)
Q Consensus 180 ~k~c~~IL~~L~k~------~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~ 253 (743)
.+.|..|+..|+++ +.+++|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~--~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPS--KVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCC--CCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 46799999999987 45799999977 55899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 004597 254 TYNPPGNDFHIMADTLRKFFEA 275 (743)
Q Consensus 254 ~YN~~~s~V~~~A~~L~~~Fe~ 275 (743)
+||+++|.+|.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.2e-21 Score=179.93 Aligned_cols=96 Identities=24% Similarity=0.351 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 004597 179 LMKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (743)
Q Consensus 179 ~~k~c~~IL~~L~k~------~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA 252 (743)
+.+.|..||+.|..+ ..+|+|.++++ +..+||||++|++||||+||++||.+|.|.|+.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 456788888888875 45799999976 6699999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHH
Q 004597 253 MTYNPPGNDFHIMADTLRKFFEAR 276 (743)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~ 276 (743)
+.||+++|.+|.+|..|+++|+..
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999863
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1.1e-21 Score=179.24 Aligned_cols=94 Identities=28% Similarity=0.472 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 004597 181 KQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (743)
Q Consensus 181 k~c~~IL~~L~k~------~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~ 254 (743)
++|..|++.|.++ ..+.+|..+|+. ..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~--~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSK--KDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCc--ccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5577777777765 568899999874 48999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 004597 255 YNPPGNDFHIMADTLRKFFEAR 276 (743)
Q Consensus 255 YN~~~s~V~~~A~~L~~~Fe~~ 276 (743)
||+++|.||.+|..|+++|++.
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999763
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.83 E-value=9.5e-21 Score=165.08 Aligned_cols=84 Identities=46% Similarity=0.781 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHH
Q 004597 183 CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDF 262 (743)
Q Consensus 183 c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s~V 262 (743)
|..||+.|++|+.+++|..||++. .+|+|+.+|++||||++|++||.+|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 899999999999999999999755 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004597 263 HIMADT 268 (743)
Q Consensus 263 ~~~A~~ 268 (743)
|.+|++
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.83 E-value=1.4e-20 Score=166.27 Aligned_cols=96 Identities=46% Similarity=0.645 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004597 180 MKQCETLLKRLMSH--QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (743)
Q Consensus 180 ~k~c~~IL~~L~k~--~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~ 257 (743)
...|..|+..|+++ +.+++|..||++. .+|+||.+|++||||++|++||.++.|.++.+|..||++||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46799999999999 9999999999964 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 004597 258 PGNDFHIMADTLRKFFEARW 277 (743)
Q Consensus 258 ~~s~V~~~A~~L~~~Fe~~~ 277 (743)
+++.++.+|..|...|+..|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.6e-20 Score=171.93 Aligned_cols=93 Identities=29% Similarity=0.366 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHc------CCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 004597 181 KQCETLLKRLMS------HQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (743)
Q Consensus 181 k~c~~IL~~L~k------~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~ 254 (743)
.++..|+..|++ |+.+++|.++|+.. .+|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 445566666665 46899999998854 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 004597 255 YNPPGNDFHIMADTLRKFFEA 275 (743)
Q Consensus 255 YN~~~s~V~~~A~~L~~~Fe~ 275 (743)
||++++.+|.+|..|++.|+.
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=2.9e-20 Score=170.73 Aligned_cols=96 Identities=28% Similarity=0.433 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 004597 179 LMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (743)
Q Consensus 179 ~~k~c~~IL~~L~k~~------~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA 252 (743)
+.++|..|++.|++.. .+.+|..+++ +..+||||++|++||||+||++||.+ |.++.+|..||+|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~--~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPL--RKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCc--cccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 4578999999999863 3568987765 55899999999999999999999998 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHH
Q 004597 253 MTYNPPGNDFHIMADTLRKFFEARWK 278 (743)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~~k 278 (743)
+.||++++.+|.+|..|+++|..++.
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988753
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=1.5e-19 Score=166.56 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=87.0
Q ss_pred HHHHHHHHc-CCCCCCCCCCcC---ccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004597 184 ETLLKRLMS-HQYGWVFNTPVD---VVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (743)
Q Consensus 184 ~~IL~~L~k-~~~a~~F~~PVD---~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~ 259 (743)
.-++..+.. -+..++|..||. +.+.++|+||.+|++||||+||++||.+|.|+++.+|..||+|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 445556666 466799999997 4444699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 004597 260 NDFHIMADTLRKFFEARWKAIE 281 (743)
Q Consensus 260 s~V~~~A~~L~~~Fe~~~k~i~ 281 (743)
|.+|.+|..|.......+.+|.
T Consensus 86 s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 86 SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888887763
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.68 E-value=1.9e-16 Score=145.93 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 004597 178 ILMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSN 251 (743)
Q Consensus 178 ~~~k~c~~IL~~L~k~~------~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~N 251 (743)
.+.+.+.+|+..+++|. .+.+|.+... ..++||.+|+.||||++|++||.+|.|.++++|..||.+||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~----~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE----LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC----cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 35677899999999994 4778888644 3678899999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004597 252 AMTYNPPGNDFHIMADTLRKFFEARWKAIE 281 (743)
Q Consensus 252 A~~YN~~~s~V~~~A~~L~~~Fe~~~k~i~ 281 (743)
|++||.+||.+|.+|..|+++|.....++.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998877663
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.65 E-value=1.2e-16 Score=197.71 Aligned_cols=95 Identities=43% Similarity=0.864 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHH
Q 004597 183 CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDF 262 (743)
Q Consensus 183 c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s~V 262 (743)
|..||..|+.|..+|||++||++. .+|+||+||++||||.||+.|+..|.|.++.+|..||.|||.||.+||.. +.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 899999999999999999999966 89999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004597 263 HIMADTLRKFFEARWKAI 280 (743)
Q Consensus 263 ~~~A~~L~~~Fe~~~k~i 280 (743)
+.....|.++|..+|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988754
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.65 E-value=2.6e-16 Score=173.68 Aligned_cols=104 Identities=32% Similarity=0.460 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHcC------CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004597 177 VILMKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~------~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~ 250 (743)
..+.+.|..|+..+... ...++|..+|+ +..+|+||.||+.||||+||+++|..+.|.++++|..|+.|||.
T Consensus 141 ~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~ 218 (371)
T COG5076 141 ELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFD 218 (371)
T ss_pred hhHHHHHHHHHHHHHHhhcccccccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34455555555555443 56888988877 77999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004597 251 NAMTYNPPGNDFHIMADTLRKFFEARWKAIEK 282 (743)
Q Consensus 251 NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~i~~ 282 (743)
||++||.++|.||.+|..|++.|...+..+..
T Consensus 219 N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~ 250 (371)
T COG5076 219 NCKLYNGPDSSVYVDAKELEKYFLKLIEEIPE 250 (371)
T ss_pred hhhhccCCCcchhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999987633
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.46 E-value=4.7e-14 Score=163.35 Aligned_cols=101 Identities=34% Similarity=0.643 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004597 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (743)
Q Consensus 178 ~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~ 257 (743)
........||..|.+|..+|||.+||+.. ++||||.+|++||||.||+.+|..++|..+..|++|+.+||.||+.||+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 45677899999999999999999999955 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 004597 258 PGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 258 ~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
.++..|+.|..|..+|...++..
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccchheecccchhhhhcchhhhh
Confidence 99999999999999998877654
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.35 E-value=4.9e-13 Score=124.61 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcC-------CCCCHHHHHHHHHHHHH
Q 004597 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASN-------AYSSPLEFLADVRLTFS 250 (743)
Q Consensus 178 ~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~-------~Y~S~~eF~~DVrLIF~ 250 (743)
+....|..+|..+++|+.+|||..|||+.+.++||||++|++||||+||+++|..+ .|.--..+.+++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 45677888889999999999999999998789999999999999999999999996 45555677788888888
Q ss_pred hhhhcCCC
Q 004597 251 NAMTYNPP 258 (743)
Q Consensus 251 NA~~YN~~ 258 (743)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 88888764
No 42
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.96 E-value=5e-10 Score=104.28 Aligned_cols=42 Identities=29% Similarity=0.452 Sum_probs=39.9
Q ss_pred cCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004597 218 KHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (743)
Q Consensus 218 k~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~ 259 (743)
-+||||+||++||.+|+|.++.+|.+||+|||.||++||.++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 468999999999999999999999999999999999999874
No 43
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.91 E-value=1.7e-09 Score=130.66 Aligned_cols=102 Identities=33% Similarity=0.467 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004597 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
....+.+..+|..|...+...+|..|||+. .+|||+++|++||||.|++.++.++.|.++++|..|+.||..||+.||
T Consensus 564 ~p~~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 564 NPFKKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred chHHHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhh
Confidence 456777889999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 004597 257 PPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
..++.+|..|..+.+.....+...
T Consensus 642 ~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 642 AKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred ccCeehHhhhHHHHhhhhhHHHhc
Confidence 999999999999999877766544
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.68 E-value=1.8e-08 Score=121.61 Aligned_cols=95 Identities=29% Similarity=0.529 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004597 181 KQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGN 260 (743)
Q Consensus 181 k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s 260 (743)
-....|+.+++.-+.+|+|++||+.. .+|+||.+|++||||.||.+++....|.+..+|..||++|+.||..||+..+
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~ 1462 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAES 1462 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccc
Confidence 44567778877779999999999966 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004597 261 DFHIMADTLRKFFEARW 277 (743)
Q Consensus 261 ~V~~~A~~L~~~Fe~~~ 277 (743)
.....|+.+-.+....+
T Consensus 1463 ~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1463 AYTKKARKIGEVGLANL 1479 (1563)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 88777776666554443
No 45
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.63 E-value=8.6e-09 Score=121.43 Aligned_cols=92 Identities=40% Similarity=0.743 Sum_probs=86.2
Q ss_pred HHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 004597 188 KRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMAD 267 (743)
Q Consensus 188 ~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s~V~~~A~ 267 (743)
+.+.+|.++|+|..||+.+.+++|+||.+|++|||++||+++|.+++|.+..+..+|+..+|.||+.||.++..|+.++.
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 004597 268 TLRKFFEARWKA 279 (743)
Q Consensus 268 ~L~~~Fe~~~k~ 279 (743)
.++..|......
T Consensus 82 ~~~~~~~~~~~~ 93 (640)
T KOG1474|consen 82 SLEKLFPKKLRS 93 (640)
T ss_pred cchhhccccccc
Confidence 999998765543
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.62 E-value=6.1e-08 Score=111.76 Aligned_cols=99 Identities=26% Similarity=0.360 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHcC------CCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004597 177 VILMKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~------~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~ 250 (743)
.....++..||..+..+ .....|.+..+ +...|+||.+|..||.|..|++|+..+.|.+.+.|..|+.|||.
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~--~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPS--RKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhccc--cccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 45677788888888877 34667888755 66899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 004597 251 NAMTYNPPGNDFHIMADTLRKFFEARW 277 (743)
Q Consensus 251 NA~~YN~~~s~V~~~A~~L~~~Fe~~~ 277 (743)
||+.||.+++.+|+++..|+..|...-
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999999998754
No 47
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.62 E-value=4.8e-08 Score=115.82 Aligned_cols=100 Identities=31% Similarity=0.434 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCC------CCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 004597 181 KQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (743)
Q Consensus 181 k~c~~IL~~L~k~~------~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~ 254 (743)
+.|..|+....+|. .+..|... |.+..+||||.||+.||++..|++++.++.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~--~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKL--PSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccC--cccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 77899998888663 46788877 44668999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004597 255 YNPPGNDFHIMADTLRKFFEARWKAIEK 282 (743)
Q Consensus 255 YN~~~s~V~~~A~~L~~~Fe~~~k~i~~ 282 (743)
||..||.||..|..|+.+|......|..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999998887753
No 48
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.54 E-value=1.3e-07 Score=114.59 Aligned_cols=102 Identities=28% Similarity=0.436 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004597 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (743)
Q Consensus 179 ~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~ 258 (743)
+.-....|++.+...++..+|..||+.. .++|||.||+.||||.|+|+.+....|.+-++|..|+.|||+|..+||++
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~ 1339 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGP 1339 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCc
Confidence 3445678899999999999999999954 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Q 004597 259 GNDFHIMADTLRKFFEARWKAIEK 282 (743)
Q Consensus 259 ~s~V~~~A~~L~~~Fe~~~k~i~~ 282 (743)
.+.+...+..+....-..|..-+.
T Consensus 1340 ~~~~t~~~q~mls~~~~~~~eked 1363 (1563)
T KOG0008|consen 1340 LASLTRQQQSMLSLCFEKLKEKED 1363 (1563)
T ss_pred hHHHHHHHHHHHHHHHHhhchhHH
Confidence 999999998888877666665433
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.40 E-value=2.2e-07 Score=108.75 Aligned_cols=75 Identities=33% Similarity=0.490 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004597 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 177 ~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
..+...|. .+.++|+|.++|+.. ..|+||.||+-||||+|+.+|+..+.|.+.++|..|+.+||.||.+||
T Consensus 292 ~~~~~~~~-------~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n 362 (720)
T KOG1472|consen 292 EELYEAAE-------RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYN 362 (720)
T ss_pred HHHHHHhc-------ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhc
Confidence 44555555 489999999999955 899999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 004597 257 PPGN 260 (743)
Q Consensus 257 ~~~s 260 (743)
..-+
T Consensus 363 ~ee~ 366 (720)
T KOG1472|consen 363 SEES 366 (720)
T ss_pred cccc
Confidence 8543
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.85 E-value=3e-06 Score=92.33 Aligned_cols=94 Identities=26% Similarity=0.219 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004597 182 QCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGND 261 (743)
Q Consensus 182 ~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s~ 261 (743)
-.+.++.+|.+...-..|..||.+. -.|+|.+||+.|||+.|++.|++-++|.+..+|..|.++|..||..||...+.
T Consensus 23 ~~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv 100 (418)
T KOG1828|consen 23 DAEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTV 100 (418)
T ss_pred hHHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcc
Confidence 3455666666666666788888755 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 004597 262 FHIMADTLRKFFEARW 277 (743)
Q Consensus 262 V~~~A~~L~~~Fe~~~ 277 (743)
++..|+.|..+-...+
T Consensus 101 ~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 101 PIVAAKRLCPVRLGMT 116 (418)
T ss_pred ccccccccchhhcchh
Confidence 9999999887654433
No 51
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.79 E-value=7e-06 Score=91.23 Aligned_cols=170 Identities=19% Similarity=0.303 Sum_probs=121.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhcccccccccccCCccccccCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCC
Q 004597 79 KDLVHKLT-SDLEQIRILQKKAGVQRTNGVTVSSSSDILSCSNGPNRPKVQNSRKSLVMTCGPGKKVNPVSNNSRGWNRG 157 (743)
Q Consensus 79 ~~L~~rl~-~Ele~VR~l~~ki~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~s~~~~~~~~kk~~~~pg~~~~~~~~ 157 (743)
-..+++|. ..|..+..++.++.++..||.++|.++-.+++. +........ ...+..+.....
T Consensus 192 ~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~----a~~l~~~~~---------~~i~~~~~~~~~---- 254 (371)
T COG5076 192 LTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVD----AKELEKYFL---------KLIEEIPEEMLE---- 254 (371)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhh----hHHHHHHHH---------HHHHhccccchh----
Confidence 44577887 899999999999999999999999888766542 111111110 001111110000
Q ss_pred CCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCC
Q 004597 158 TSGRFESAGKPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSS 237 (743)
Q Consensus 158 ~~gr~~~~~~~~~~~~~~~~~~~k~c~~IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S 237 (743)
.+..+..... . .+-..++.....+..+|+|..++... ..|+|+++|..+|++.|.+.++..++|..
T Consensus 255 --~~~~~~~~~~----~------~~~~~~i~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T COG5076 255 --LSIKPGREER----E------ERESVLITNSQAHVGAWPFLRPVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRP 320 (371)
T ss_pred --hccCcccccc----c------cchhhcccccccccccccccccCCcc--cccchhhhhhcccccccchhhhhcccCCC
Confidence 0000000000 0 02223334446778899999998855 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 004597 238 PLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKA 279 (743)
Q Consensus 238 ~~eF~~DVrLIF~NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~ 279 (743)
...|..|..++|.||..||.....++..+..+..+|...+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (371)
T COG5076 321 EETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRL 362 (371)
T ss_pred ccccccccchhhhcccccchhhhhhhhhccchhhhHhhhhhh
Confidence 999999999999999999999999999999999988776553
No 52
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.74 E-value=1.8e-05 Score=86.44 Aligned_cols=83 Identities=22% Similarity=0.183 Sum_probs=73.7
Q ss_pred HHHHHHcCCCCCCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 004597 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIM 265 (743)
Q Consensus 186 IL~~L~k~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s~V~~~ 265 (743)
...+|........|+.|+-.. ..|.|..+|++|+|++|++.|...+.|.| .+|..|..||+.||++||.+...+|.+
T Consensus 216 q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyel 292 (418)
T KOG1828|consen 216 QEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYEL 292 (418)
T ss_pred HHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHH
Confidence 345555566777888887644 79999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHH
Q 004597 266 ADTLRK 271 (743)
Q Consensus 266 A~~L~~ 271 (743)
|..+..
T Consensus 293 ank~lh 298 (418)
T KOG1828|consen 293 ANKQLH 298 (418)
T ss_pred HHhhhh
Confidence 988776
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.0089 Score=70.35 Aligned_cols=69 Identities=41% Similarity=0.532 Sum_probs=39.9
Q ss_pred HHhhhhccc-CCCCCChhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHH
Q 004597 579 LKAKEKTLS-QGDKGDPEKLRREREELELQKRK-----EKARLQAEAKAAEEARR----QAEADAAVEARRKR-EVEREA 647 (743)
Q Consensus 579 ~ka~~k~l~-~~~k~dp~kl~~e~e~le~~q~e-----ekar~~a~~~aae~a~r----~~~~~~~~e~~rkr-e~erea 647 (743)
|.-|-++|. |. |+|+||+|++.|| ||+|.++|-|+.++-.+ ++|-|++.|-.||+ -.+|||
T Consensus 329 LerRRq~leeqq--------qreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEa 400 (1118)
T KOG1029|consen 329 LERRRQALEEQQ--------QREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREA 400 (1118)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555664 33 5666666665444 56677777777665443 33334444444443 345789
Q ss_pred HHHHHHHh
Q 004597 648 ARQALLKM 655 (743)
Q Consensus 648 aR~al~~M 655 (743)
||++|.+|
T Consensus 401 ar~ElEkq 408 (1118)
T KOG1029|consen 401 AREELEKQ 408 (1118)
T ss_pred HHHHHHHH
Confidence 99888665
No 54
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.55 E-value=0.023 Score=54.62 Aligned_cols=61 Identities=18% Similarity=0.360 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004597 220 PMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 220 PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
|.||.-|++||..|.|+++.+|.+||-.|+.-++.-.+....+-+.-..+..+|...+..+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 7899999999999999999999999999998777765544444444444555665544443
No 55
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=95.50 E-value=0.16 Score=52.82 Aligned_cols=8 Identities=38% Similarity=0.904 Sum_probs=4.8
Q ss_pred hccccccC
Q 004597 712 LGLYMKED 719 (743)
Q Consensus 712 LGl~~k~d 719 (743)
|=||+|.|
T Consensus 206 ~pF~~k~~ 213 (216)
T PF11600_consen 206 LPFFVKDD 213 (216)
T ss_pred cCceecCC
Confidence 34677755
No 56
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=94.84 E-value=0.32 Score=60.84 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 004597 234 AYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFF 273 (743)
Q Consensus 234 ~Y~S~~eF~~DVrLIF~NA~~YN~~~s~V~~~A~~L~~~F 273 (743)
.|..|+.|.. +.. +..+.++||.++..|..++
T Consensus 206 ~YmAPEvL~g-------e~~-~~s~KSDVWSLG~ILYELL 237 (1021)
T PTZ00266 206 YYWSPELLLH-------ETK-SYDDKSDMWALGCIIYELC 237 (1021)
T ss_pred cccCHHHHhc-------cCC-CCCchhHHHHHHHHHHHHH
Confidence 4777776532 112 2334578888888775544
No 57
>PLN03086 PRLI-interacting factor K; Provisional
Probab=94.69 E-value=0.085 Score=61.82 Aligned_cols=77 Identities=35% Similarity=0.428 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHhh
Q 004597 597 LRREREELELQKRKE----KARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALLKMEKTVEINENSRFLEDLE 672 (743)
Q Consensus 597 l~~e~e~le~~q~ee----kar~~a~~~aae~a~r~~~~~~~~e~~rkre~ereaaR~al~~Mekt~~~~~n~~~~~dle 672 (743)
|+.-+|.||+.|++- |.|+++|-|+-++|++++|+ .++..+.+|=-.++|+-.|=|+||....-...+-|.+-|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (567)
T PLN03086 5 LRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREA-IEAAQRSRRLDAIEAQIKADQQMQESLQAGRGIVFSRIFE 83 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEee
Confidence 455566666555543 33567888887888877774 2233333343445666667888998777776776665554
Q ss_pred hh
Q 004597 673 ML 674 (743)
Q Consensus 673 ~l 674 (743)
-+
T Consensus 84 ~~ 85 (567)
T PLN03086 84 AV 85 (567)
T ss_pred cc
Confidence 43
No 58
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=92.46 E-value=4 Score=43.84 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004597 612 KARLQAEAKAAEEARRQAE 630 (743)
Q Consensus 612 kar~~a~~~aae~a~r~~~ 630 (743)
++.++++...++.+.|++.
T Consensus 112 ~~~~E~~k~~~e~e~Rk~l 130 (264)
T PF13904_consen 112 KQKEEREKQEEEKEERKRL 130 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444344444333
No 59
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=92.19 E-value=0.97 Score=56.72 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=11.7
Q ss_pred eeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004597 67 VLSLPNLSRSERKDLVHKLTSDLEQIRIL 95 (743)
Q Consensus 67 ~~~ls~~s~~e~~~L~~rl~~Ele~VR~l 95 (743)
++.+..+...+. .+|..|+...+.|
T Consensus 45 vIk~~~l~e~~~----~~~~~EI~IL~~L 69 (1021)
T PTZ00266 45 AISYRGLKEREK----SQLVIEVNVMREL 69 (1021)
T ss_pred EEeccccCHHHH----HHHHHHHHHHHHc
Confidence 344444444433 3455566544443
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.11 E-value=4.3 Score=49.34 Aligned_cols=44 Identities=30% Similarity=0.405 Sum_probs=29.5
Q ss_pred HHHHHhhhcccchhhhHHhhhhcccCC---CCCChhHHHHHHHHHHH
Q 004597 563 KLYRATLLKNRFADTILKAKEKTLSQG---DKGDPEKLRREREELEL 606 (743)
Q Consensus 563 k~~raa~lk~rfadti~ka~~k~l~~~---~k~dp~kl~~e~e~le~ 606 (743)
|.|||-+=-.|-.+.=|+-+---|..+ -|.+..-||+|-|+|+.
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Confidence 778888878888888777775555443 34555566767666663
No 61
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=90.51 E-value=0.83 Score=54.51 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 004597 381 LSNDTLLTLRKLLDDYLEE 399 (743)
Q Consensus 381 L~~~TL~eL~~yV~~~Lke 399 (743)
-+|+|+.+|-.-|.+||.-
T Consensus 771 sDPe~m~~lv~kVn~WLv~ 789 (1259)
T KOG0163|consen 771 SDPETMLELVAKVNKWLVR 789 (1259)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 4677888887777777654
No 62
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=1.7 Score=52.13 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHhhhhhc
Q 004597 633 AAVEARRKREVEREAARQA--LLKMEKTVE 660 (743)
Q Consensus 633 ~~~e~~rkre~ereaaR~a--l~~Mekt~~ 660 (743)
|..|++|+|.+|=|.||.+ |-+|+|--+
T Consensus 401 ar~ElEkqRqlewErar~qem~~Qk~reqe 430 (1118)
T KOG1029|consen 401 AREELEKQRQLEWERARRQEMLNQKNREQE 430 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3566677777777777654 334555544
No 63
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=86.44 E-value=0.47 Score=57.09 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=50.5
Q ss_pred ccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 004597 217 IKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEA 275 (743)
Q Consensus 217 Ik~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s~V~~~A~~L~~~Fe~ 275 (743)
-.-|..|..|+.+|++++|++.+.|..||..|.+||.+|.+-+..+...+..|...|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 34588999999999999999999999999999999999999887776666666666543
No 64
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.34 E-value=4.3 Score=43.60 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004597 600 EREELELQKRKEKARLQ 616 (743)
Q Consensus 600 e~e~le~~q~eekar~~ 616 (743)
|+.+||+...|||.|++
T Consensus 332 ekqeleqmaeeekkr~e 348 (445)
T KOG2891|consen 332 EKQELEQMAEEEKKREE 348 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666666666654
No 65
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=85.22 E-value=3.1 Score=50.16 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004597 599 REREELELQKRKEKARLQA 617 (743)
Q Consensus 599 ~e~e~le~~q~eekar~~a 617 (743)
+|.|+-+++.+||+.|+++
T Consensus 227 qe~eE~qkreeEE~~r~ee 245 (1064)
T KOG1144|consen 227 QEEEERQKREEEERLRREE 245 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 66
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=84.56 E-value=3.8 Score=49.29 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 004597 632 DAAVEARRK 640 (743)
Q Consensus 632 ~~~~e~~rk 640 (743)
+++.|.|||
T Consensus 957 k~e~e~kRK 965 (1259)
T KOG0163|consen 957 KAEMETKRK 965 (1259)
T ss_pred HHHHHHHHH
Confidence 334444444
No 67
>PTZ00121 MAEBL; Provisional
Probab=84.54 E-value=4 Score=52.16 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 004597 178 ILMKQCETLL 187 (743)
Q Consensus 178 ~~~k~c~~IL 187 (743)
.++..|..-|
T Consensus 356 ~sf~~CiE~L 365 (2084)
T PTZ00121 356 LSFKKCIEGL 365 (2084)
T ss_pred chHHHHHHHH
Confidence 3455554433
No 68
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=84.14 E-value=0.56 Score=58.45 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=55.9
Q ss_pred CCCCCCCcCcccc---CCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHhhhhcCCCC
Q 004597 196 GWVFNTPVDVVKM---NIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLA--DVRLTFSNAMTYNPPG 259 (743)
Q Consensus 196 a~~F~~PVD~~~~---~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~--DVrLIF~NA~~YN~~~ 259 (743)
...|..|+.+... .+++|..+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 5678888764322 25699999999999999999999999999999999 9999999999999865
No 69
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=82.43 E-value=2.6 Score=51.02 Aligned_cols=70 Identities=37% Similarity=0.416 Sum_probs=39.1
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHhhhhh
Q 004597 586 LSQGDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRK-REVE---REAARQALLKMEKTV 659 (743)
Q Consensus 586 l~~~~k~dp~kl~~e~e~le~~q~eekar~~a~~~aae~a~r~~~~~~~~e~~rk-re~e---reaaR~al~~Mekt~ 659 (743)
|...-|.|-||++.++|+=+.+++ +..+.+++.||.-|-.++ .++.|++|. +|.| -+.++.++++|+.|.
T Consensus 572 liE~rKe~~E~~~~~re~Eea~~q---~~e~~~~r~aE~kRl~ee-~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te 645 (988)
T KOG2072|consen 572 LIEKRKEDLEKQNVEREAEEAQEQ---AKEQRQAREAEEKRLIEE-KKEREAKRILREKEAIRKKELKERLEQLKQTE 645 (988)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788888777665554433 333334444444444333 233444443 6666 667778888887663
No 70
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=82.07 E-value=4.9 Score=46.50 Aligned_cols=10 Identities=70% Similarity=0.813 Sum_probs=7.6
Q ss_pred HHHHHHHHHH
Q 004597 641 REVEREAARQ 650 (743)
Q Consensus 641 re~ereaaR~ 650 (743)
+|-|||.+|+
T Consensus 355 ~~ee~e~~R~ 364 (460)
T KOG1363|consen 355 EEEERETARQ 364 (460)
T ss_pred HHHHHHHHHH
Confidence 5677888886
No 71
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=80.99 E-value=5.8 Score=49.05 Aligned_cols=32 Identities=9% Similarity=0.247 Sum_probs=17.6
Q ss_pred ChhhhccCCCCHHHHHHHHh-cCCCCCHHHHHH
Q 004597 212 DYYTIIKHPMDFGTIKEKMA-SNAYSSPLEFLA 243 (743)
Q Consensus 212 dY~~iIk~PMDL~TIkkKL~-~~~Y~S~~eF~~ 243 (743)
-|+.--.+||-|..+...+= .+.|..+.+|+.
T Consensus 262 ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~ 294 (1018)
T KOG2002|consen 262 AYKENNENPVALNHLANHFYFKKDYERVWHLAE 294 (1018)
T ss_pred HHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence 36666678886665554432 244555555543
No 72
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=77.26 E-value=13 Score=39.51 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=42.1
Q ss_pred hhcccchhhhHHhhhh-cccC-----CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 569 LLKNRFADTILKAKEK-TLSQ-----GDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKRE 642 (743)
Q Consensus 569 ~lk~rfadti~ka~~k-~l~~-----~~k~dp~kl~~e~e~le~~q~eekar~~a~~~aae~a~r~~~~~~~~e~~rkre 642 (743)
++|+.|+-+..+.+.. .+.+ ..+..-++++.+.+++-..-++|-++|.++|++.-.+-+.+-.....+++.+++
T Consensus 4 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e 83 (255)
T TIGR03825 4 IIKSTKSVIPAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERE 83 (255)
T ss_pred hhcCccCCcchhhcceeeeeeeccCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555532 2211 222234666677777666666777777776665554443322112233344444
Q ss_pred HHHHHHHHH
Q 004597 643 VEREAARQA 651 (743)
Q Consensus 643 ~ereaaR~a 651 (743)
.-++.||++
T Consensus 84 ~~~e~A~~e 92 (255)
T TIGR03825 84 RLIQEAKQE 92 (255)
T ss_pred HHHHHHHHH
Confidence 444444443
No 73
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=75.11 E-value=13 Score=44.47 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=10.5
Q ss_pred hhHHhhhhcccCCCCCChhHHHHHHHH
Q 004597 577 TILKAKEKTLSQGDKGDPEKLRREREE 603 (743)
Q Consensus 577 ti~ka~~k~l~~~~k~dp~kl~~e~e~ 603 (743)
.|+|...|-..+- +|+|+|||+
T Consensus 247 l~~KQ~rk~meEr-----eK~R~erEr 268 (811)
T KOG4364|consen 247 LLLKQLRKNMEER-----EKERKERER 268 (811)
T ss_pred HHHHHHHHhHHHH-----HHHHHHHHH
Confidence 3455555444433 355555444
No 74
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=74.55 E-value=17 Score=41.25 Aligned_cols=8 Identities=63% Similarity=0.808 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 004597 611 EKARLQAE 618 (743)
Q Consensus 611 ekar~~a~ 618 (743)
|+.|++++
T Consensus 107 e~er~~~~ 114 (387)
T PRK09510 107 EKERLAAQ 114 (387)
T ss_pred HHHHHHHH
Confidence 33444443
No 75
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=73.58 E-value=12 Score=36.74 Aligned_cols=79 Identities=34% Similarity=0.370 Sum_probs=42.6
Q ss_pred ccchhhhHHhhhhcccCCCCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 004597 572 NRFADTILKAKEKTLSQGDKGDPEKLRREREELELQKRKEK-ARLQAEAKAAEEARRQAEA----DAAVEARRKREVERE 646 (743)
Q Consensus 572 ~rfadti~ka~~k~l~~~~k~dp~kl~~e~e~le~~q~eek-ar~~a~~~aae~a~r~~~~----~~~~e~~rkre~ere 646 (743)
||.|-+-.|--..-|+.+..+- -|+|+|++|++.-.|+ -+|+...|-.++..--++. ....|+-++||.|+.
T Consensus 86 NrV~qktkklta~~LD~~k~~~---SRRereeiEKQrA~eRYmklh~aGKTeqAkaDLaRlalir~qReeaa~kre~ekk 162 (174)
T KOG3375|consen 86 NRVAQKTKKLTALDLDGPKELE---SRREREEIEKQRAKERYMKLHLAGKTEQAKADLARLALIRQQREEAAAKREAEKK 162 (174)
T ss_pred hHHHHhhhhhhhhccCCchhhh---hhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555554333343444332221 5889999998765544 3454433322221111111 125677788999999
Q ss_pred HHHHHHH
Q 004597 647 AARQALL 653 (743)
Q Consensus 647 aaR~al~ 653 (743)
||+.+-+
T Consensus 163 aa~~~tk 169 (174)
T KOG3375|consen 163 AADVATK 169 (174)
T ss_pred hhhhhhc
Confidence 9987654
No 76
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=73.46 E-value=3.2 Score=48.24 Aligned_cols=14 Identities=36% Similarity=0.264 Sum_probs=6.9
Q ss_pred CCCccccccccccC
Q 004597 29 SSGRIDAEITASED 42 (743)
Q Consensus 29 ~~~~~~~~~~~s~~ 42 (743)
|+..-|+|-+.+|+
T Consensus 3 ssv~~dkps~~~d~ 16 (739)
T KOG2140|consen 3 SSVQPDKPSTSSDK 16 (739)
T ss_pred cccCCCCCCCchhh
Confidence 44445555554444
No 77
>PLN02316 synthase/transferase
Probab=71.45 E-value=9.2 Score=48.45 Aligned_cols=20 Identities=35% Similarity=0.677 Sum_probs=12.5
Q ss_pred CCeEEEecCCCCHHHHH-HHH
Q 004597 371 EDEIEIDIDDLSNDTLL-TLR 390 (743)
Q Consensus 371 ~dEIEIDId~L~~~TL~-eL~ 390 (743)
...+-+|.+.++++.+. +|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ 118 (1036)
T PLN02316 98 EESISTDMDGIDDDSLDRKLK 118 (1036)
T ss_pred cccccccccccchHHHHHHhh
Confidence 35566777777777665 444
No 78
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.58 E-value=16 Score=44.49 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 004597 602 EELELQKRKE 611 (743)
Q Consensus 602 e~le~~q~ee 611 (743)
..|||+.++|
T Consensus 491 ~~LEkrL~eE 500 (697)
T PF09726_consen 491 QQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 79
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=69.93 E-value=5.7 Score=39.06 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=2.6
Q ss_pred CCCCccc
Q 004597 505 HKDKLDE 511 (743)
Q Consensus 505 s~~~~~~ 511 (743)
++.+++.
T Consensus 146 sdSdS~s 152 (177)
T KOG3116|consen 146 SDSDSES 152 (177)
T ss_pred Ccccccc
Confidence 3333333
No 80
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=69.61 E-value=18 Score=44.10 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 599 REREELELQKRKEKARLQAEAKAAEEARRQAE 630 (743)
Q Consensus 599 ~e~e~le~~q~eekar~~a~~~aae~a~r~~~ 630 (743)
+|+||-.|+..||++|.+.+.+++++||+++.
T Consensus 235 reeEE~~r~eeEEer~~ee~E~~~eEak~kkK 266 (1064)
T KOG1144|consen 235 REEEERLRREEEEERRREEEEAQEEEAKEKKK 266 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566666666666666665544
No 81
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.25 E-value=24 Score=43.64 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHhhhcccChHHHHHHHHh
Q 004597 330 PVMTDQEKHNLGRELESLLAEMPVHIIDFLRE 361 (743)
Q Consensus 330 r~MT~eEK~kL~~~I~~Lp~E~l~~II~II~~ 361 (743)
.-++..+...|.+.|..|..+....+..|+++
T Consensus 222 ~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~ 253 (782)
T PRK00409 222 LYIEPQSVVELNNEIRELRNKEEQEIERILKE 253 (782)
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777766544444444443
No 82
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=68.90 E-value=2.9 Score=51.60 Aligned_cols=48 Identities=54% Similarity=0.650 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 595 EKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQA 651 (743)
Q Consensus 595 ~kl~~e~e~le~~q~eekar~~a~~~aae~a~r~~~~~~~~e~~rkre~ereaaR~a 651 (743)
-||=+.|||+ -||+|-+||.+|.|++.|.++ .|..|.||+||++.|++
T Consensus 578 SKLAkKRee~-----~ek~RReaEq~~reerERer~----~e~~rerer~~~~~r~~ 625 (982)
T PF03154_consen 578 SKLAKKREER-----VEKARREAEQRAREERERERE----REREREREREREAERAA 625 (982)
T ss_pred cHHhhhhHHH-----HHHHHhhhhccchhhhhhccc----ccchhhhhhhhhhhhhh
Confidence 4777776664 356677777766555444322 22244455555555554
No 83
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.06 E-value=29 Score=36.93 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=8.4
Q ss_pred HHHHHHhhhhhccc
Q 004597 649 RQALLKMEKTVEIN 662 (743)
Q Consensus 649 R~al~~Mekt~~~~ 662 (743)
-.+.++|+-.+-++
T Consensus 173 heEylkmKaaFsVe 186 (299)
T KOG3054|consen 173 HEEYLKMKAAFSVE 186 (299)
T ss_pred HHHHHHHHhheeec
Confidence 34566777665554
No 84
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=67.13 E-value=34 Score=34.67 Aligned_cols=24 Identities=50% Similarity=0.501 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 596 KLRREREELELQKRKEKARLQAEA 619 (743)
Q Consensus 596 kl~~e~e~le~~q~eekar~~a~~ 619 (743)
+.|+++|+.+++.++|.++..++.
T Consensus 44 ~ER~ekEE~er~~ree~~~k~~Ee 67 (171)
T PF05672_consen 44 QERLEKEEQERRKREELARKLAEE 67 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 85
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=63.23 E-value=28 Score=40.70 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004597 382 SNDTLLTLRKLLDDYLE 398 (743)
Q Consensus 382 ~~~TL~eL~~yV~~~Lk 398 (743)
.-+....|++.|..||.
T Consensus 77 ~vdhI~nlrrIiagyl~ 93 (489)
T PF05262_consen 77 RVDHINNLRRIIAGYLE 93 (489)
T ss_pred CccHHHHHHHHHHHHHH
Confidence 33444555555555554
No 86
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=62.93 E-value=43 Score=36.27 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004597 603 ELELQKRKEKARLQAEAK 620 (743)
Q Consensus 603 ~le~~q~eekar~~a~~~ 620 (743)
.-|++.-|||.+++|+..
T Consensus 350 aeerqraeekeq~eaee~ 367 (445)
T KOG2891|consen 350 AEERQRAEEKEQKEAEEL 367 (445)
T ss_pred HHHhhhhHHHHHHHHHHH
Confidence 334555556666666544
No 87
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=62.83 E-value=32 Score=40.37 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=13.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 004597 597 LRREREELE----LQKRKEKARLQAEAKAA 622 (743)
Q Consensus 597 l~~e~e~le----~~q~eekar~~a~~~aa 622 (743)
.+++++..| ++.++|++|++|+.+++
T Consensus 202 i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~ 231 (591)
T KOG2412|consen 202 IQREKQRKEQIRERKERSEEKREEAERKRR 231 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 344544444 33456666776665443
No 88
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=62.52 E-value=79 Score=31.60 Aligned_cols=97 Identities=11% Similarity=0.163 Sum_probs=42.2
Q ss_pred hhhHHhhhhcccCCCCCChhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 576 DTILKAKEKTLSQGDKGDPEKLRREREELELQKRK--EKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALL 653 (743)
Q Consensus 576 dti~ka~~k~l~~~~k~dp~kl~~e~e~le~~q~e--ekar~~a~~~aae~a~r~~~~~~~~e~~rkre~ereaaR~al~ 653 (743)
..|+..|++.+..+ -..-++++.|-++++..-++ .+||.+|+.-+++ ||.+..++++++.+.-.+.=++.--+..+
T Consensus 36 ~~iLe~R~~~I~~~-L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e-~~~~~~a~~~~~~~~~ea~L~~~~~~~~~ 113 (155)
T PRK06569 36 EEIFNNRQTNIQDN-ITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE-KIDSLESEFLIKKKNLEQDLKNSINQNIE 113 (155)
T ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666544321 11223344444444433332 2333333333333 22222323332222223333445567788
Q ss_pred HhhhhhcccccchhhHHhhhhh
Q 004597 654 KMEKTVEINENSRFLEDLEMLR 675 (743)
Q Consensus 654 ~Mekt~~~~~n~~~~~dle~l~ 675 (743)
+|.+.++ +.-...-..|-+|.
T Consensus 114 ~~~~~~~-~~~~~~~~~~i~~~ 134 (155)
T PRK06569 114 DINLAAK-QFRTNKSEAIIKLA 134 (155)
T ss_pred HHHHHHH-HHHHhHHHHHHHHH
Confidence 8998888 43333334444444
No 89
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=62.42 E-value=28 Score=38.38 Aligned_cols=8 Identities=38% Similarity=0.833 Sum_probs=6.9
Q ss_pred CCeEEEec
Q 004597 371 EDEIEIDI 378 (743)
Q Consensus 371 ~dEIEIDI 378 (743)
.|.|+|+|
T Consensus 110 ~D~v~i~i 117 (321)
T PF07946_consen 110 KDRVTIEI 117 (321)
T ss_pred CCeEEEEE
Confidence 68899998
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=60.85 E-value=27 Score=41.36 Aligned_cols=103 Identities=31% Similarity=0.370 Sum_probs=61.2
Q ss_pred HhhhcccchhhhH--------Hhhhh-cccCCCCCC---hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 004597 567 ATLLKNRFADTIL--------KAKEK-TLSQGDKGD---PEKLRREREELELQK---RKEKARLQAEAKAAEEARRQAEA 631 (743)
Q Consensus 567 aa~lk~rfadti~--------ka~~k-~l~~~~k~d---p~kl~~e~e~le~~q---~eekar~~a~~~aae~a~r~~~~ 631 (743)
+|-|+.+.||.-+ .+++| +|.|.-..+ -+||+.|++++++.. +.|+.+|+.+...+-+++|-.=
T Consensus 334 ~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vql- 412 (546)
T PF07888_consen 334 AAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQL- 412 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-
Confidence 5555666666543 34455 455543444 457777887777654 4455677777766666665321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHhhhhh
Q 004597 632 DAAVEARRKREVEREAARQALLKMEKTVEINENSRFLEDLEMLR 675 (743)
Q Consensus 632 ~~~~e~~rkre~ereaaR~al~~Mekt~~~~~n~~~~~dle~l~ 675 (743)
.| ..||+.--.+-..+.+|||.=-..++=..+.+++.|.
T Consensus 413 ---sE--~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 413 ---SE--NRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLE 451 (546)
T ss_pred ---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2344444556667788888777777777666666543
No 91
>PLN03086 PRLI-interacting factor K; Provisional
Probab=60.74 E-value=12 Score=44.33 Aligned_cols=50 Identities=28% Similarity=0.441 Sum_probs=23.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 588 QGDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRK 640 (743)
Q Consensus 588 ~~~k~dp~kl~~e~e~le~~q~eekar~~a~~~aae~a~r~~~~~~~~e~~rk 640 (743)
|.+..+-.|+++|+| |+.|+|.|+-..++-|+-..||-..++|+++++++
T Consensus 16 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (567)
T PLN03086 16 QRERKQRAKLKLERE---RKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65 (567)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343344444444443 34445555444445555555555444555554444
No 92
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=60.31 E-value=1.6e+02 Score=30.02 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 596 KLRREREELELQKRKEKARLQAEAK 620 (743)
Q Consensus 596 kl~~e~e~le~~q~eekar~~a~~~ 620 (743)
.+|.|+|+.|+++++|..|+..+..
T Consensus 36 ReQkErEE~ER~ekEE~er~~ree~ 60 (171)
T PF05672_consen 36 REQKEREEQERLEKEEQERRKREEL 60 (171)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4488888888888888777765443
No 93
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=59.77 E-value=56 Score=36.10 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.4
Q ss_pred HHHHHH
Q 004597 608 KRKEKA 613 (743)
Q Consensus 608 q~eeka 613 (743)
|.+|.+
T Consensus 133 qqeEqa 138 (387)
T COG3064 133 QQEEQA 138 (387)
T ss_pred HHHHHH
Confidence 344443
No 94
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.55 E-value=53 Score=40.67 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHhhhcccChHHHHHHHHh
Q 004597 330 PVMTDQEKHNLGRELESLLAEMPVHIIDFLRE 361 (743)
Q Consensus 330 r~MT~eEK~kL~~~I~~Lp~E~l~~II~II~~ 361 (743)
.-++..+...|.+.|..|-.+....+..|++.
T Consensus 217 ~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~ 248 (771)
T TIGR01069 217 FYIEPQAIVKLNNKLAQLKNEEECEIEKILRT 248 (771)
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777766555555555543
No 95
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=58.34 E-value=47 Score=41.16 Aligned_cols=8 Identities=38% Similarity=0.131 Sum_probs=4.2
Q ss_pred hhhHHhhh
Q 004597 576 DTILKAKE 583 (743)
Q Consensus 576 dti~ka~~ 583 (743)
+.|-.|++
T Consensus 497 ~ii~~A~~ 504 (771)
T TIGR01069 497 FIIEQAKT 504 (771)
T ss_pred HHHHHHHH
Confidence 45555554
No 96
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.70 E-value=46 Score=35.56 Aligned_cols=40 Identities=38% Similarity=0.472 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 596 KLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKR 641 (743)
Q Consensus 596 kl~~e~e~le~~q~eekar~~a~~~aae~a~r~~~~~~~~e~~rkr 641 (743)
++|+|-|+-+ |||+.|.++ .+|..+++.|..+++|+++|+
T Consensus 118 r~qRe~E~~e---REeRk~ke~---~eE~erKkdEeR~~eEae~k~ 157 (299)
T KOG3054|consen 118 RAQREAEEAE---REERKRKED---YEEAERKKDEERLAEEAELKE 157 (299)
T ss_pred HHHHHHHHHH---HHHHhHHHH---HHHHHHhhhHHHHHHHHHHhH
Confidence 3455554444 344445554 344445555555777777775
No 97
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=57.25 E-value=55 Score=33.76 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004597 640 KREVEREAARQALLKMEK 657 (743)
Q Consensus 640 kre~ereaaR~al~~Mek 657 (743)
++++|.|+=|++|.+-|+
T Consensus 107 q~q~EEEKRrqkie~we~ 124 (190)
T PF06936_consen 107 QKQEEEEKRRQKIEMWES 124 (190)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555666644443
No 98
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=57.16 E-value=8.2 Score=45.06 Aligned_cols=6 Identities=0% Similarity=0.329 Sum_probs=2.3
Q ss_pred HHHHHH
Q 004597 355 IIDFLR 360 (743)
Q Consensus 355 II~II~ 360 (743)
+.+||-
T Consensus 488 lc~mii 493 (739)
T KOG2140|consen 488 LCNMII 493 (739)
T ss_pred HHHHHH
Confidence 334333
No 99
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.99 E-value=1.1e+02 Score=35.35 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhc
Q 004597 335 QEKHNLGRELESLL 348 (743)
Q Consensus 335 eEK~kL~~~I~~Lp 348 (743)
.+..+|...|+++.
T Consensus 59 ~~~~kL~~~lk~~e 72 (420)
T COG4942 59 DQRAKLEKQLKSLE 72 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555553
No 100
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=56.28 E-value=7.2 Score=48.13 Aligned_cols=55 Identities=42% Similarity=0.543 Sum_probs=39.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 592 GDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALL 653 (743)
Q Consensus 592 ~dp~kl~~e~e~le~~q~eekar~~a~~~aae~a~r~~~~~~~~e~~rkre~ereaaR~al~ 653 (743)
--|+||-..++.+ +|||+-+|+++++|+-+|- .+++.|..|+||.|||+-|-+-.
T Consensus 807 l~p~~~akl~~~~-----~~kak~aa~~ra~er~~~~--r~re~e~~~e~e~~~~aersak~ 861 (1229)
T KOG2133|consen 807 LSPSKLAKLRSNV-----EEKAKRAAEQRARERSERE--RERETELEREREVEREAERSAKE 861 (1229)
T ss_pred CCcccccccccch-----HHHHHHHHHHHHHHhhhhh--hhhhhcccccccccchHHhhhhh
Confidence 3445554444443 5789999999999876664 45677888888888888877665
No 101
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=56.27 E-value=2.6e+02 Score=32.56 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHh
Q 004597 641 REVEREAARQALLKM 655 (743)
Q Consensus 641 re~ereaaR~al~~M 655 (743)
+-+||+|||+-..=|
T Consensus 409 ~~rErKAAkTLsAIL 423 (503)
T KOG4220|consen 409 LVRERKAAKTLSAIL 423 (503)
T ss_pred hHHHHHHHHHHHHHH
Confidence 567899998755443
No 102
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=56.08 E-value=8.1 Score=46.25 Aligned_cols=12 Identities=33% Similarity=0.413 Sum_probs=7.4
Q ss_pred CCChhHHHHHHH
Q 004597 591 KGDPEKLRRERE 602 (743)
Q Consensus 591 k~dp~kl~~e~e 602 (743)
--||-|+-+|.-
T Consensus 1351 wsdpskipqevl 1362 (1463)
T PHA03308 1351 WSDPSKIPQEVL 1362 (1463)
T ss_pred cCCcccchHHHH
Confidence 457777766543
No 103
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=54.97 E-value=89 Score=32.17 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 004597 632 DAAVEARRKREVEREAARQALLKM 655 (743)
Q Consensus 632 ~~~~e~~rkre~ereaaR~al~~M 655 (743)
++=.+.+++-+.+-|++|++.++=
T Consensus 76 ~~~~~~~~e~~~~~e~~r~~feke 99 (228)
T PRK06800 76 EQFQEHVQQQMKEIEAARQQFQKE 99 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777653
No 104
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=54.39 E-value=56 Score=36.07 Aligned_cols=9 Identities=11% Similarity=0.231 Sum_probs=5.6
Q ss_pred cchhhhHHh
Q 004597 573 RFADTILKA 581 (743)
Q Consensus 573 rfadti~ka 581 (743)
.++|.+.+.
T Consensus 242 ~l~D~~~~~ 250 (321)
T PF07946_consen 242 YLIDKLARF 250 (321)
T ss_pred HHHHHhhee
Confidence 467777743
No 105
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=54.24 E-value=9.9 Score=45.56 Aligned_cols=15 Identities=13% Similarity=0.565 Sum_probs=8.0
Q ss_pred ccCCCCHHHHHHHHh
Q 004597 217 IKHPMDFGTIKEKMA 231 (743)
Q Consensus 217 Ik~PMDL~TIkkKL~ 231 (743)
-..|+-|+...+|+.
T Consensus 966 a~dpv~l~ef~kr~s 980 (1463)
T PHA03308 966 ARDPVALGEFCKRIS 980 (1463)
T ss_pred ccCchHHHHHHhhcC
Confidence 345555555555554
No 106
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=53.98 E-value=91 Score=31.10 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 004597 641 REVEREAARQALL 653 (743)
Q Consensus 641 re~ereaaR~al~ 653 (743)
-+.||++|..+|+
T Consensus 109 Ie~Ek~~Al~elr 121 (154)
T PRK06568 109 IQNQKSTASKELQ 121 (154)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555554444
No 107
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.53 E-value=29 Score=39.50 Aligned_cols=50 Identities=32% Similarity=0.281 Sum_probs=23.9
Q ss_pred hhHHhhhhcccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 577 TILKAKEKTLSQGDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEAR 626 (743)
Q Consensus 577 ti~ka~~k~l~~~~k~dp~kl~~e~e~le~~q~eekar~~a~~~aae~a~ 626 (743)
.|-++..=-|...-+.+-++.|++.++-=+++-.+...=-||.|-||.++
T Consensus 351 lid~~~~~~lS~~~k~kt~~~RQ~~~e~~~K~th~~rqEaaQ~kk~Ek~K 400 (440)
T KOG2357|consen 351 LIDKAKKLFLSKDAKAKTDKNRQRVEEEFLKLTHAARQEAAQEKKAEKKK 400 (440)
T ss_pred HHHHHHhhhchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433444444566667777666544444333322233444444444
No 108
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=53.27 E-value=7.9 Score=47.26 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=49.6
Q ss_pred CCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHH
Q 004597 199 FNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAY--------------S----------SPLE------FLADVRLT 248 (743)
Q Consensus 199 F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y--------------~----------S~~e------F~~DVrLI 248 (743)
|.-++| ....|.|..+...|.+|+|++..|.+..| . ++.+ ..+-+.+|
T Consensus 86 lv~~~d--~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i 163 (1113)
T KOG0644|consen 86 LVPMLD--KPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSI 163 (1113)
T ss_pred hccCcC--CCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccc
Confidence 344666 33688899999999999999999998777 2 2333 56678889
Q ss_pred HHhhhhcCCCCCHHH
Q 004597 249 FSNAMTYNPPGNDFH 263 (743)
Q Consensus 249 F~NA~~YN~~~s~V~ 263 (743)
-.||+.++.|++.|-
T Consensus 164 ~~at~~~akPgtmvq 178 (1113)
T KOG0644|consen 164 GCATFSIAKPGTMVQ 178 (1113)
T ss_pred ccceeeecCcHHHHH
Confidence 999999999999553
No 109
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=53.14 E-value=74 Score=39.32 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 608 KRKEKARLQAEAKAAEEARRQAEA 631 (743)
Q Consensus 608 q~eekar~~a~~~aae~a~r~~~~ 631 (743)
++.|+-|+....+.+|++.|++|.
T Consensus 794 ~R~eerk~~~~re~EEEr~Rr~EE 817 (988)
T KOG2072|consen 794 ARIEERKQAYYREIEEERARREEE 817 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555543
No 110
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=53.11 E-value=1.3e+02 Score=31.12 Aligned_cols=11 Identities=9% Similarity=0.419 Sum_probs=5.1
Q ss_pred hhhHHhhhhcc
Q 004597 576 DTILKAKEKTL 586 (743)
Q Consensus 576 dti~ka~~k~l 586 (743)
-.||..|+..+
T Consensus 79 ~~vLe~R~~~I 89 (204)
T PRK09174 79 GGIIETRRDRI 89 (204)
T ss_pred HHHHHHHHHHH
Confidence 34455555433
No 111
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=50.93 E-value=98 Score=32.35 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=4.4
Q ss_pred CCChhHHHH
Q 004597 591 KGDPEKLRR 599 (743)
Q Consensus 591 k~dp~kl~~ 599 (743)
.-||+...+
T Consensus 149 edDp~lfk~ 157 (250)
T KOG1150|consen 149 EDDPELFKQ 157 (250)
T ss_pred ccCHHHHHH
Confidence 345655443
No 112
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=50.74 E-value=47 Score=36.67 Aligned_cols=6 Identities=50% Similarity=0.861 Sum_probs=2.6
Q ss_pred HHHHHH
Q 004597 600 EREELE 605 (743)
Q Consensus 600 e~e~le 605 (743)
|+|+|.
T Consensus 107 e~er~~ 112 (387)
T COG3064 107 EKERLK 112 (387)
T ss_pred HHHHHH
Confidence 444443
No 113
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=50.06 E-value=1e+02 Score=31.96 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 004597 641 REVEREAARQAL 652 (743)
Q Consensus 641 re~ereaaR~al 652 (743)
-+.|++.|+.+|
T Consensus 153 Ie~Ek~~a~~~L 164 (205)
T PRK06231 153 IEKERRELKEQL 164 (205)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 114
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.27 E-value=87 Score=38.90 Aligned_cols=48 Identities=29% Similarity=0.286 Sum_probs=24.0
Q ss_pred hhhHHhhhhcccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 576 DTILKAKEKTLSQGDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEA 625 (743)
Q Consensus 576 dti~ka~~k~l~~~~k~dp~kl~~e~e~le~~q~eekar~~a~~~aae~a 625 (743)
+.|-+|++. |. .+..+-++|-.+.++..+.+.+++..+++..+.++..
T Consensus 502 ~ii~~A~~~-~~-~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~ 549 (782)
T PRK00409 502 NIIEEAKKL-IG-EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKL 549 (782)
T ss_pred HHHHHHHHH-Hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666663 22 2344666666555555555444444444444433333
No 115
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=49.12 E-value=1.6e+02 Score=34.98 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004597 609 RKEKARLQAEAKAAEEARR 627 (743)
Q Consensus 609 ~eekar~~a~~~aae~a~r 627 (743)
.+|--.+..+.++++.+|+
T Consensus 241 ~~e~~~~dee~k~i~~~rk 259 (782)
T PF07218_consen 241 EEEEKELDEEHKEIEEKRK 259 (782)
T ss_pred HHHHhHHhHHHHHHHHHHH
Confidence 3333445555555555543
No 116
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=48.59 E-value=72 Score=28.65 Aligned_cols=33 Identities=48% Similarity=0.690 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 004597 594 PEKLRREREELELQKRKEKA-RLQAEAKAAEEAR 626 (743)
Q Consensus 594 p~kl~~e~e~le~~q~eeka-r~~a~~~aae~a~ 626 (743)
|+==|+|+|++|+++..|+- .|+++.+-.++-.
T Consensus 23 ~~lSRRERE~iekq~A~erY~klh~~GKT~eaka 56 (82)
T PF10252_consen 23 PELSRREREEIEKQRARERYMKLHAEGKTDEAKA 56 (82)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 33347799999999876654 4566666655443
No 117
>PLN02316 synthase/transferase
Probab=48.09 E-value=39 Score=43.06 Aligned_cols=20 Identities=55% Similarity=0.729 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004597 620 KAAEEARRQAEADAAVEARR 639 (743)
Q Consensus 620 ~aae~a~r~~~~~~~~e~~r 639 (743)
+++|++||+++++||.+|.+
T Consensus 270 ~~~ee~~r~~~~kaa~~a~~ 289 (1036)
T PLN02316 270 RQAEEQRRREEEKAAMEADR 289 (1036)
T ss_pred HHHHHHHHHHHHhhhhhhhh
Confidence 34445555555555444433
No 118
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=47.81 E-value=3.8e+02 Score=28.89 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHh
Q 004597 644 EREAARQALLKM 655 (743)
Q Consensus 644 ereaaR~al~~M 655 (743)
-.+.|.+.|++=
T Consensus 178 ~~e~a~~~~q~W 189 (264)
T PF13904_consen 178 SQEEAKQRYQEW 189 (264)
T ss_pred CHHHHHHHHHHH
Confidence 345666666654
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=46.88 E-value=85 Score=37.23 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=5.8
Q ss_pred ccccCCCCCCC
Q 004597 436 EDIDIGGNEPP 446 (743)
Q Consensus 436 Edvdigg~~~p 446 (743)
-|+|.|..+||
T Consensus 357 fdfdAcnevpP 367 (940)
T KOG4661|consen 357 FDFDACNEVPP 367 (940)
T ss_pred ccccccccCCC
Confidence 45666744443
No 120
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=46.54 E-value=1.5e+02 Score=30.00 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004597 637 ARRKREVEREAARQALLKM 655 (743)
Q Consensus 637 ~~rkre~ereaaR~al~~M 655 (743)
++.+.+.+|+.|+.+|..+
T Consensus 132 a~~~I~~~k~~a~~~l~~~ 150 (181)
T PRK13454 132 SEKRIAEIRAGALESVEEV 150 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555566665555543
No 121
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.50 E-value=99 Score=35.57 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=10.6
Q ss_pred CCCCcCccccCCCChhhhccCC
Q 004597 199 FNTPVDVVKMNIPDYYTIIKHP 220 (743)
Q Consensus 199 F~~PVD~~~~~~PdY~~iIk~P 220 (743)
|..+....-..+|+.|..|..|
T Consensus 68 ~es~~glg~nsfp~~yse~r~~ 89 (502)
T KOG0982|consen 68 FESQMGLGLNSFPKRYSELRER 89 (502)
T ss_pred cccccCcccccchHHHHHHhcC
Confidence 4444443333456655555544
No 122
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=46.48 E-value=1.7e+02 Score=29.23 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhhh
Q 004597 643 VEREAARQALLKMEKT 658 (743)
Q Consensus 643 ~ereaaR~al~~Mekt 658 (743)
+..+++..|++-.+|.
T Consensus 134 l~~~i~~lA~~~a~ki 149 (175)
T PRK14472 134 LRNEVADLAVKGAEKI 149 (175)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 123
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=44.40 E-value=2.2e+02 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004597 632 DAAVEARRKREVEREAARQALLKMEKTV 659 (743)
Q Consensus 632 ~~~~e~~rkre~ereaaR~al~~Mekt~ 659 (743)
++-.+++..-++-.+.||+.++.++..+
T Consensus 89 ea~~eA~~ea~r~~~~A~~~Ie~Ek~~A 116 (154)
T PRK06568 89 EKTKEIEEFLEHKKSDAIQLIQNQKSTA 116 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555666666665543
No 124
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=43.97 E-value=2.7e+02 Score=28.08 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=5.0
Q ss_pred hhHHhhhhcc
Q 004597 577 TILKAKEKTL 586 (743)
Q Consensus 577 ti~ka~~k~l 586 (743)
.++..|++..
T Consensus 54 ~~L~~R~~~I 63 (184)
T PRK13455 54 GMLDKRAEGI 63 (184)
T ss_pred HHHHHHHHHH
Confidence 3455565443
No 125
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=43.86 E-value=1.5e+02 Score=29.56 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=4.5
Q ss_pred hhHHhhhhcc
Q 004597 577 TILKAKEKTL 586 (743)
Q Consensus 577 ti~ka~~k~l 586 (743)
.++..|.+.+
T Consensus 46 ~~l~~R~~~I 55 (174)
T PRK07352 46 KILEERREAI 55 (174)
T ss_pred HHHHHHHHHH
Confidence 3445554433
No 126
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=43.83 E-value=1.5e+02 Score=29.95 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=4.9
Q ss_pred hhhHHhhhhcc
Q 004597 576 DTILKAKEKTL 586 (743)
Q Consensus 576 dti~ka~~k~l 586 (743)
-.++..|....
T Consensus 50 ~~~l~~R~~~I 60 (184)
T CHL00019 50 SDLLDNRKQTI 60 (184)
T ss_pred HHHHHHHHHHH
Confidence 34445554433
No 127
>COG4290 Guanyl-specific ribonuclease Sa [Nucleotide transport and metabolism]
Probab=43.82 E-value=14 Score=35.92 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=22.6
Q ss_pred CCCCCcccccccccCCCCCC------CCCCCcccccc
Q 004597 7 RFSGGYYRSNAFETTGESEG------SGSSGRIDAEI 37 (743)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 37 (743)
+-+.||||-..|||+|+|.- +|..-+.|+|+
T Consensus 100 ar~~gYYREYTVeTpG~sdRGarRIV~GGd~~t~~e~ 136 (152)
T COG4290 100 ARSRGYYREYTVETPGLSDRGARRIVTGGDPPTDPEV 136 (152)
T ss_pred ccccCcceeeEeeCCCcccCCceeEeeCCCCCCCcce
Confidence 34689999999999998752 36666666554
No 128
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=43.74 E-value=76 Score=37.49 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004597 612 KARLQAEAKAAEEARRQ 628 (743)
Q Consensus 612 kar~~a~~~aae~a~r~ 628 (743)
+.|+++++++-++|+|+
T Consensus 213 ~~~~~~~e~kr~Eaerk 229 (591)
T KOG2412|consen 213 RERKERSEEKREEAERK 229 (591)
T ss_pred HHHHHHHHhhhhhhHHH
Confidence 33444444444444443
No 129
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.55 E-value=85 Score=35.93 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 004597 603 ELELQKRKEKAR-LQAEAKAAEEARRQAE 630 (743)
Q Consensus 603 ~le~~q~eekar-~~a~~~aae~a~r~~~ 630 (743)
|+.++.++||++ ...+++|.+...++++
T Consensus 389 EaaQ~kk~Ek~Ka~kekl~a~~d~Ek~rr 417 (440)
T KOG2357|consen 389 EAAQEKKAEKKKAEKEKLKASGDPEKQRR 417 (440)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 344444445444 3444455444444443
No 130
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=41.86 E-value=2.2e+02 Score=29.29 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004597 629 AEADAAVEARRKREVEREAARQALLKMEKTVE 660 (743)
Q Consensus 629 ~~~~~~~e~~rkre~ereaaR~al~~Mekt~~ 660 (743)
|+.+|+...+|-..--+-++|+.|...++.+.
T Consensus 53 Ae~ea~~~~~~~~saa~l~~r~~ll~~k~~i~ 84 (198)
T PRK01558 53 AEKEANDYKRHALEASRQAGRDLLISFEKSIK 84 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433333334445566777777777664
No 131
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=41.85 E-value=1e+02 Score=36.10 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=5.8
Q ss_pred hhhHHhhhhh
Q 004597 666 RFLEDLEMLR 675 (743)
Q Consensus 666 ~~~~dle~l~ 675 (743)
.+++||..|.
T Consensus 457 klmed~dv~k 466 (708)
T KOG3654|consen 457 KLMEDLDVLK 466 (708)
T ss_pred HHHHhhcccC
Confidence 4566776554
No 132
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=41.58 E-value=1.4e+02 Score=30.04 Aligned_cols=12 Identities=42% Similarity=0.479 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 004597 596 KLRREREELELQ 607 (743)
Q Consensus 596 kl~~e~e~le~~ 607 (743)
|-++..++.+++
T Consensus 70 k~r~k~~E~err 81 (157)
T PF15236_consen 70 KRRQKQEEEERR 81 (157)
T ss_pred HHHHHHHHHHHH
Confidence 333433444433
No 133
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=41.24 E-value=2.4e+02 Score=28.16 Aligned_cols=18 Identities=6% Similarity=0.194 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 004597 642 EVEREAARQALLKMEKTV 659 (743)
Q Consensus 642 e~ereaaR~al~~Mekt~ 659 (743)
++..+.+..+++-.+|.+
T Consensus 131 el~~ei~~lA~~~a~kil 148 (173)
T PRK13460 131 QLQNQIVEMTITIASKVL 148 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444445533
No 134
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=41.23 E-value=2.2e+02 Score=28.81 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=5.4
Q ss_pred hhhHHhhhhcc
Q 004597 576 DTILKAKEKTL 586 (743)
Q Consensus 576 dti~ka~~k~l 586 (743)
-.|+..|...+
T Consensus 57 ~~~l~~R~~~I 67 (181)
T PRK13454 57 GAVLAERQGTI 67 (181)
T ss_pred HHHHHHHHHHH
Confidence 34555555444
No 135
>KOG1646 consensus 40S ribosomal protein S6 [Translation, ribosomal structure and biogenesis]
Probab=41.18 E-value=91 Score=32.44 Aligned_cols=42 Identities=31% Similarity=0.391 Sum_probs=28.9
Q ss_pred CChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 592 GDPEKLRREREELE-LQKRKEKARLQAEAKAAEEARRQAEADA 633 (743)
Q Consensus 592 ~dp~kl~~e~e~le-~~q~eekar~~a~~~aae~a~r~~~~~~ 633 (743)
..|..||++++++- ++++..|.|-+|-+-|..-|.|+.|+++
T Consensus 180 vtp~~lqrk~~~~alkk~~~~k~re~aaey~kLLakr~kE~k~ 222 (237)
T KOG1646|consen 180 VTPRRLQRKRQRIALKKKQIKKNREEAAEYAKLLAKRLKEAKE 222 (237)
T ss_pred cchHHHHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 47899999998776 3455666776666666666666666533
No 136
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=40.85 E-value=1.2e+02 Score=35.21 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHhhh
Q 004597 333 TDQEKHNLGRELESL 347 (743)
Q Consensus 333 T~eEK~kL~~~I~~L 347 (743)
+.+++..+.+.+..|
T Consensus 80 d~e~~~~~qqe~~~L 94 (429)
T PRK00247 80 DEASIRELQQKQKDL 94 (429)
T ss_pred CHHHHHHHHHHHHHH
Confidence 345555555555444
No 137
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=40.69 E-value=2.2e+02 Score=28.06 Aligned_cols=12 Identities=33% Similarity=0.365 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 004597 641 REVEREAARQAL 652 (743)
Q Consensus 641 re~ereaaR~al 652 (743)
-+.|++.|+.+|
T Consensus 113 i~~ek~~a~~~l 124 (164)
T PRK14471 113 IESEKNAAMAEI 124 (164)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 138
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=40.65 E-value=2.6e+02 Score=27.44 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=4.3
Q ss_pred chhhhHHhhh
Q 004597 574 FADTILKAKE 583 (743)
Q Consensus 574 fadti~ka~~ 583 (743)
.++.+-.|++
T Consensus 58 I~~~l~~Ae~ 67 (156)
T CHL00118 58 IRKNLTKASE 67 (156)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 139
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=40.42 E-value=1.8e+02 Score=30.09 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=7.5
Q ss_pred cchhhHHhhhhh
Q 004597 664 NSRFLEDLEMLR 675 (743)
Q Consensus 664 n~~~~~dle~l~ 675 (743)
-..|++.|+.|.
T Consensus 228 ~~~~~~~l~~~~ 239 (242)
T cd03405 228 FYAFYRSLEAYR 239 (242)
T ss_pred HHHHHHHHHHHH
Confidence 345667777665
No 140
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=39.94 E-value=2.4e+02 Score=27.39 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004597 636 EARRKREVEREAARQALLK 654 (743)
Q Consensus 636 e~~rkre~ereaaR~al~~ 654 (743)
+++.+-+.+++.|+..|..
T Consensus 96 ~A~~~~~~~~~~a~~~l~~ 114 (141)
T PRK08476 96 AKKAELESKYEAFAKQLAN 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555443
No 141
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=39.55 E-value=88 Score=28.61 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=42.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004597 232 SNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 232 ~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
...|.|..-|...|..|-.....++..+..+..+|..|...|++.|+.+
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3468888989888888887777777778899999999999999999865
No 142
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=39.53 E-value=1.7e+02 Score=31.19 Aligned_cols=18 Identities=6% Similarity=0.257 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 004597 642 EVEREAARQALLKMEKTV 659 (743)
Q Consensus 642 e~ereaaR~al~~Mekt~ 659 (743)
++..+.+..+++--+|.+
T Consensus 120 ~L~~~v~~la~~~A~kiL 137 (250)
T PRK14474 120 ALQQQTGQQMVKIIRAAL 137 (250)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 143
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=39.18 E-value=66 Score=37.49 Aligned_cols=23 Identities=17% Similarity=0.279 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004597 601 REELELQKRKEKARLQAEAKAAE 623 (743)
Q Consensus 601 ~e~le~~q~eekar~~a~~~aae 623 (743)
.+++.+++++++.|-++.++.+|
T Consensus 298 ~~~~q~~~~~~~er~~r~~~~~e 320 (460)
T KOG1363|consen 298 ERRLQMRRSEQDEREARLALEQE 320 (460)
T ss_pred hHHHhhcccchhHHHHHHHHHHh
Confidence 34444444555555555555544
No 144
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=38.96 E-value=2.4e+02 Score=27.63 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 004597 642 EVEREAARQALL 653 (743)
Q Consensus 642 e~ereaaR~al~ 653 (743)
+.||+.|+.+|.
T Consensus 108 ~~ek~~a~~el~ 119 (159)
T PRK09173 108 AQAETDAINAVR 119 (159)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 145
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=38.49 E-value=47 Score=42.92 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 004597 80 DLVHKLTSDLEQIRILQKKA 99 (743)
Q Consensus 80 ~L~~rl~~Ele~VR~l~~ki 99 (743)
..+++.-+-||.|.+|+..-
T Consensus 49 sriQ~mLGnYeemk~~~~~~ 68 (1191)
T PF05110_consen 49 SRIQNMLGNYEEMKELLTDK 68 (1191)
T ss_pred HHHHHHhcCHHHHhcccccc
Confidence 33444457788888887643
No 146
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=38.45 E-value=2.8e+02 Score=27.74 Aligned_cols=11 Identities=18% Similarity=0.293 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 004597 642 EVEREAARQAL 652 (743)
Q Consensus 642 e~ereaaR~al 652 (743)
+.|+++|+..|
T Consensus 124 ~~ek~~a~~~l 134 (173)
T PRK13453 124 NSQKERAIADI 134 (173)
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 147
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=38.10 E-value=1.8e+02 Score=33.50 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhccc
Q 004597 596 KLRREREELELQKR-KEKARLQAEAKAAEEARRQAEADAAVEARRKREVERE-AARQALLKMEKTVEIN 662 (743)
Q Consensus 596 kl~~e~e~le~~q~-eekar~~a~~~aae~a~r~~~~~~~~e~~rkre~ere-aaR~al~~Mekt~~~~ 662 (743)
|||-|.|+|..... .+|.--+-.++-+++.+-.+++-++...|-++|+||. |-=+.|-+-|+..+.+
T Consensus 257 ~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemd 325 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMD 325 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 56667777764422 2222222222222333333343344445556777763 3334444444444443
No 148
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=37.85 E-value=1.9e+02 Score=30.58 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=3.4
Q ss_pred hhHHhhhh
Q 004597 667 FLEDLEML 674 (743)
Q Consensus 667 ~~~dle~l 674 (743)
|+++|+.|
T Consensus 153 ~i~~l~~l 160 (246)
T TIGR03321 153 FVQRLRTL 160 (246)
T ss_pred HHHHhhcC
Confidence 44444333
No 149
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=37.15 E-value=1.2e+02 Score=33.50 Aligned_cols=44 Identities=32% Similarity=0.373 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 004597 608 KRKEKARLQAEAKAAEEARRQAEA---DAAVEARRKREVEREAARQA 651 (743)
Q Consensus 608 q~eekar~~a~~~aae~a~r~~~~---~~~~e~~rkre~ereaaR~a 651 (743)
.+.|+.|...-..+++..|.+.++ ++....-++||.|||.||..
T Consensus 145 ~KaE~~R~K~L~dQ~eArR~k~~~~r~~~~~~~~~~~~~~~~~~~~~ 191 (357)
T PTZ00436 145 VKNEKKKERQLAEQLAAKRLKDEQHRHKARKQELRKREKDRERARRE 191 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 344555555555555555544443 33333445699999998864
No 150
>PRK11546 zraP zinc resistance protein; Provisional
Probab=37.02 E-value=1.2e+02 Score=29.88 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCchHHHHHhhhcccchhhhHHhhh---------hcccCCCCCChhHHHH
Q 004597 549 DGESAPNERQVSPDKLYRATLLKNRFADTILKAKE---------KTLSQGDKGDPEKLRR 599 (743)
Q Consensus 549 ~~~~~~~~~~~sp~k~~raa~lk~rfadti~ka~~---------k~l~~~~k~dp~kl~~ 599 (743)
.|+....-.+++||+.--+=.|...|.+....-|+ .+|...++-|++|++.
T Consensus 34 ~G~~~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~a 93 (143)
T PRK11546 34 HGMWQQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINA 93 (143)
T ss_pred CCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34445567899999998888888888887776664 2555778888876654
No 151
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=36.70 E-value=2.9e+02 Score=28.64 Aligned_cols=7 Identities=14% Similarity=0.501 Sum_probs=3.0
Q ss_pred hHHhhhh
Q 004597 578 ILKAKEK 584 (743)
Q Consensus 578 i~ka~~k 584 (743)
++..|.+
T Consensus 76 ~L~~R~~ 82 (205)
T PRK06231 76 FLNKRKE 82 (205)
T ss_pred HHHHHHH
Confidence 3444443
No 152
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=36.21 E-value=1.1e+02 Score=34.24 Aligned_cols=35 Identities=37% Similarity=0.523 Sum_probs=21.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 589 GDKGDPEKLRREREELELQKRKEKARLQAEAKAAE 623 (743)
Q Consensus 589 ~~k~dp~kl~~e~e~le~~q~eekar~~a~~~aae 623 (743)
|+..|--++++|+++-+.+...+|+......+..+
T Consensus 86 ~ey~~~~~~~rer~E~eL~eLkekq~~r~~eR~~e 120 (361)
T KOG3634|consen 86 GEYEDFDRIEREREEKELKELKEKQEKRKLEREEE 120 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33445556777777777776667766665555443
No 153
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=36.18 E-value=5.2 Score=47.66 Aligned_cols=74 Identities=9% Similarity=-0.060 Sum_probs=66.3
Q ss_pred CCCCCCcCccccCCCChhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 004597 197 WVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKF 272 (743)
Q Consensus 197 ~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DVrLIF~NA~~YN~~~s~V~~~A~~L~~~ 272 (743)
..|+.-+| ...+|+||.+++-||-+.-+.+++..+.|.....|..|+.++|.|+..|+.+..-++..+..|.+.
T Consensus 214 er~w~~~d--g~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 214 ERLWKLPD--GEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred cccccCcc--cccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 44666555 346999999999999999999999999999999999999999999999999999999988888764
No 154
>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.
Probab=35.95 E-value=38 Score=26.47 Aligned_cols=16 Identities=56% Similarity=0.775 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhh
Q 004597 643 VEREAARQALLKMEKT 658 (743)
Q Consensus 643 ~ereaaR~al~~Mekt 658 (743)
+-||+-|||+.++||.
T Consensus 24 lRre~erqA~~QLekA 39 (42)
T PF12052_consen 24 LRREAERQALAQLEKA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5567778999988874
No 155
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=35.80 E-value=1.7e+02 Score=33.88 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 004597 642 EVEREAARQALLKMEKTV 659 (743)
Q Consensus 642 e~ereaaR~al~~Mekt~ 659 (743)
++..+.+..+++--+|.+
T Consensus 116 elr~ei~~lAv~~A~kil 133 (445)
T PRK13428 116 QLRLELGHESVRQAGELV 133 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444445544
No 156
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=35.39 E-value=3.5e+02 Score=30.39 Aligned_cols=54 Identities=22% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 004597 605 ELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALLKMEKTVEI 661 (743)
Q Consensus 605 e~~q~eekar~~a~~~aae~a~r~~~~~~~~e~~rkre~ereaaR~al~~Mekt~~~ 661 (743)
=++.+||++++|++..+.....+..|. +-..--||+.-.-|+|+-+-=|-.+-+
T Consensus 136 i~~~~EEn~~lqlqL~~l~~e~~Ekee---esq~LnrELaE~layqq~L~~eyQatf 189 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQECGEKEE---ESQTLNRELAEALAYQQELNDEYQATF 189 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHhHH---HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 355778888888877766544432221 111112555555566655444444333
No 157
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=35.15 E-value=25 Score=38.87 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=9.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q 004597 234 AYSSPLEFLADVRLTFS 250 (743)
Q Consensus 234 ~Y~S~~eF~~DVrLIF~ 250 (743)
.|.-+.-|..|+-.+..
T Consensus 157 dY~VPk~F~dDlF~y~g 173 (407)
T KOG2130|consen 157 DYSVPKYFRDDLFQYLG 173 (407)
T ss_pred hcCcchhhhHHHHHhcC
Confidence 45555556655544433
No 158
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=35.09 E-value=63 Score=32.15 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 595 EKLRREREELELQKRKEKARLQAEAK 620 (743)
Q Consensus 595 ~kl~~e~e~le~~q~eekar~~a~~~ 620 (743)
.||+.|.+.|....+.|-++..++|+
T Consensus 13 ~~L~~EL~~L~~~~r~e~~~~i~~Ar 38 (157)
T PRK01885 13 ARLKQELDYLWREERPEVTQKVSWAA 38 (157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45555555554444444444433333
No 159
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.88 E-value=1.4e+02 Score=32.60 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=4.5
Q ss_pred CCCCchHHH
Q 004597 557 RQVSPDKLY 565 (743)
Q Consensus 557 ~~~sp~k~~ 565 (743)
+.+++++..
T Consensus 82 k~ls~eE~~ 90 (290)
T KOG2689|consen 82 KLLSEEEKK 90 (290)
T ss_pred cccChHHHH
Confidence 445665443
No 160
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=34.29 E-value=2.4e+02 Score=31.03 Aligned_cols=8 Identities=38% Similarity=0.418 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 004597 650 QALLKMEK 657 (743)
Q Consensus 650 ~al~~Mek 657 (743)
+.|+-|++
T Consensus 288 ~~le~~~~ 295 (317)
T TIGR01932 288 RSLEAYEK 295 (317)
T ss_pred HHHHHHHH
Confidence 33444443
No 161
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=34.14 E-value=22 Score=44.27 Aligned_cols=38 Identities=42% Similarity=0.482 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhc
Q 004597 623 EEARRQAEADAAVEARRK----REVEREAARQALLKMEKTVE 660 (743)
Q Consensus 623 e~a~r~~~~~~~~e~~rk----re~ereaaR~al~~Mekt~~ 660 (743)
|.+||.+|+++..|..|. ||.|||.+|++=+....+..
T Consensus 589 ek~RReaEq~~reerERer~~e~~rerer~~~~~r~~k~s~~ 630 (982)
T PF03154_consen 589 EKARREAEQRAREEREREREREREREREREREAERAAKASSS 630 (982)
T ss_pred HHHHhhhhccchhhhhhcccccchhhhhhhhhhhhhhccccC
Confidence 445666665444444443 44566666666555555444
No 162
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=33.77 E-value=30 Score=38.26 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 004597 271 KFFEARWKAI 280 (743)
Q Consensus 271 ~~Fe~~~k~i 280 (743)
++|..-|-.+
T Consensus 162 k~F~dDlF~y 171 (407)
T KOG2130|consen 162 KYFRDDLFQY 171 (407)
T ss_pred hhhhHHHHHh
Confidence 3565554443
No 163
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=33.65 E-value=1.8e+02 Score=30.00 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=11.5
Q ss_pred CCCChhHHHHHHHHHHHH
Q 004597 590 DKGDPEKLRREREELELQ 607 (743)
Q Consensus 590 ~k~dp~kl~~e~e~le~~ 607 (743)
.+.||..+.+..|+++..
T Consensus 71 ~~~dpd~v~~rqEa~eaA 88 (190)
T PF06936_consen 71 AKKDPDVVVRRQEAMEAA 88 (190)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHH
Confidence 456777776666666644
No 164
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=33.38 E-value=2.8e+02 Score=27.75 Aligned_cols=7 Identities=43% Similarity=0.577 Sum_probs=3.8
Q ss_pred cccccch
Q 004597 660 EINENSR 666 (743)
Q Consensus 660 ~~~~n~~ 666 (743)
-+|+|+.
T Consensus 107 ~~~~~~~ 113 (155)
T PRK06569 107 SINQNIE 113 (155)
T ss_pred HHHHHHH
Confidence 4566654
No 165
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=33.36 E-value=74 Score=32.91 Aligned_cols=16 Identities=56% Similarity=0.625 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 004597 594 PEKLRREREELELQKR 609 (743)
Q Consensus 594 p~kl~~e~e~le~~q~ 609 (743)
-+|-|+|||+||.+..
T Consensus 128 ~~~~~~~~~~~~~~~~ 143 (197)
T PRK12585 128 IEKARQEREELEERME 143 (197)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 4678888888887643
No 166
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=33.23 E-value=3.1e+02 Score=27.40 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 004597 644 EREAARQALLKM 655 (743)
Q Consensus 644 ereaaR~al~~M 655 (743)
..+.|+..++.+
T Consensus 113 ~~~~a~~~ie~e 124 (173)
T PRK13460 113 QKDQAVKEIELA 124 (173)
T ss_pred HHHHHHHHHHHH
Confidence 333344443333
No 167
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=33.00 E-value=3.9e+02 Score=29.21 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 004597 650 QALLKMEK 657 (743)
Q Consensus 650 ~al~~Mek 657 (743)
.++.++|+
T Consensus 140 kEkeEiER 147 (276)
T PF06991_consen 140 KEKEEIER 147 (276)
T ss_pred HHHHHHHH
Confidence 33444443
No 168
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=32.75 E-value=1.1e+02 Score=31.22 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 004597 636 EARRKREVEREAARQALLKMEKT 658 (743)
Q Consensus 636 e~~rkre~ereaaR~al~~Mekt 658 (743)
-..|+.+.++.+.+.+|.+|=.+
T Consensus 61 n~qr~~~~~~K~~~AqikQlI~~ 83 (177)
T PF09831_consen 61 NRQRQAEAERKEIQAQIKQLIEQ 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666667777666443
No 169
>PF00836 Stathmin: Stathmin family; InterPro: IPR000956 Stathmin is a ubiquitous phosphorylated protein thought to act as an intracellular relay for diverse regulatory pathways [], functioning through a variety of secondary messengers. Its phosphorylation and gene expression are regulated throughout development [] and in response to extracellular signals regulating cell proliferation, differentiation and function []. Stathmin, and the related proteins SCG10 and XB3, contain a N-terminal domain (XB3 contains an additional N-terminal hydrophobic region), a 78 amino acid coiled-coil region, and a short C-terminal domain.; GO: 0035556 intracellular signal transduction; PDB: 3RYC_E 3RYH_E 3N2K_E 1Z2B_E 1SA1_E 3HKD_E 3DU7_E 3HKC_E 3HKB_E 3HKE_E ....
Probab=32.53 E-value=56 Score=32.15 Aligned_cols=33 Identities=45% Similarity=0.542 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 620 KAAEEARRQAEADAAVEARRKREVEREAARQAL 652 (743)
Q Consensus 620 ~aae~a~r~~~~~~~~e~~rkre~ereaaR~al 652 (743)
+|||+.|+-.|++.-+-+.-+||.+|+.++.|+
T Consensus 52 eAAEERRKs~Ea~~l~~laekreh~~ev~~Ka~ 84 (140)
T PF00836_consen 52 EAAEERRKSQEAQVLKKLAEKREHEREVLQKAL 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544443333333334455555544443
No 170
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=32.48 E-value=2.6e+02 Score=29.53 Aligned_cols=55 Identities=29% Similarity=0.288 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Q 004597 602 EELELQKRKEKARLQAEAKAAEEARRQAEADA--AVEARRKREVEREAARQALLKME 656 (743)
Q Consensus 602 e~le~~q~eekar~~a~~~aae~a~r~~~~~~--~~e~~rkre~ereaaR~al~~Me 656 (743)
|||.....-=..-|++...+|-+.-|+.+.+. =..+=++--+||--||.+||+.=
T Consensus 4 EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 4 EELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666665556666666555554444444332 33444556788999999999753
No 171
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=32.33 E-value=3.5e+02 Score=28.26 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhh
Q 004597 647 AARQALLKMEKT 658 (743)
Q Consensus 647 aaR~al~~Mekt 658 (743)
++|++++.++..
T Consensus 76 ~~R~~~l~aKqe 87 (207)
T PRK01005 76 AGKRSLESLKQA 87 (207)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 172
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=32.00 E-value=3.4e+02 Score=27.02 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=6.7
Q ss_pred ccchhhhHHhhh
Q 004597 572 NRFADTILKAKE 583 (743)
Q Consensus 572 ~rfadti~ka~~ 583 (743)
.+.++.|..|+.
T Consensus 53 ~~I~~~l~~A~~ 64 (174)
T PRK07352 53 EAILQALKEAEE 64 (174)
T ss_pred HHHHHHHHHHHH
Confidence 345566666654
No 173
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=31.30 E-value=4e+02 Score=30.49 Aligned_cols=38 Identities=37% Similarity=0.358 Sum_probs=22.2
Q ss_pred hhhhHHhhhhcccCCCCCChhHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 004597 575 ADTILKAKEKTLSQGDKGDPEKLRREREELELQK-----RKEKARLQAEAKAA 622 (743)
Q Consensus 575 adti~ka~~k~l~~~~k~dp~kl~~e~e~le~~q-----~eekar~~a~~~aa 622 (743)
||..-.|||. ..||+.+.++|+-. -.|||--+|++++|
T Consensus 292 ~~I~~VarEN----------s~LqrQKle~e~~l~a~qeakek~~KEAqarea 334 (442)
T PF06637_consen 292 AGIERVAREN----------SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREA 334 (442)
T ss_pred hhHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777772 35777777777652 23444445554443
No 174
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=31.05 E-value=1.2e+02 Score=35.70 Aligned_cols=12 Identities=8% Similarity=0.346 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 004597 267 DTLRKFFEARWK 278 (743)
Q Consensus 267 ~~L~~~Fe~~~k 278 (743)
+.|+.+|-..-.
T Consensus 116 kkmea~fakqrq 127 (708)
T KOG3654|consen 116 KKMEAIFAKQRQ 127 (708)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 175
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=30.91 E-value=4.2e+02 Score=26.48 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 004597 641 REVEREAARQALLKMEK 657 (743)
Q Consensus 641 re~ereaaR~al~~Mek 657 (743)
.++..+++..|++-.+|
T Consensus 132 ~~l~~ei~~lA~~~a~k 148 (173)
T PRK13453 132 ADINNQVSELSVLIASK 148 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 176
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=30.89 E-value=1.7e+02 Score=35.61 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 004597 633 AAVEARRKREVE 644 (743)
Q Consensus 633 ~~~e~~rkre~e 644 (743)
+..|+.|+-+.|
T Consensus 341 rkee~~rk~dee 352 (811)
T KOG4364|consen 341 RKEEKSRKSDEE 352 (811)
T ss_pred HHHHHhhhhhhh
Confidence 334444443333
No 177
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=30.56 E-value=2.8e+02 Score=32.91 Aligned_cols=19 Identities=21% Similarity=0.143 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhhhcccc
Q 004597 645 REAARQALLKMEKTVEINE 663 (743)
Q Consensus 645 reaaR~al~~Mekt~~~~~ 663 (743)
.++..+.|.+|-++..|..
T Consensus 339 ~~~~~~~l~~~l~~~~~e~ 357 (582)
T PF09731_consen 339 EEAHEEHLKNELREQAIEL 357 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555544433333
No 178
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=30.01 E-value=3.8e+02 Score=26.53 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=23.2
Q ss_pred hhHHhhhhcccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 577 TILKAKEKTLSQGDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAE 630 (743)
Q Consensus 577 ti~ka~~k~l~~~~k~dp~kl~~e~e~le~~q~eekar~~a~~~aae~a~r~~~ 630 (743)
||.++.- |+|-++|+....+.+...+.++=....+.++++
T Consensus 39 HvYR~~R--------------RrE~~Rl~~me~~~~~e~~~~eF~~kree~~~~ 78 (142)
T PF06658_consen 39 HVYRASR--------------RREYERLEYMEEEAKKEKEDEEFQRKREERKKE 78 (142)
T ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766 678888876665555444444444333333333
No 179
>PF11596 DUF3246: Protein of unknown function (DUF3246); InterPro: IPR021642 This is a small family of fungal proteins one of whose members, A3LUS4 from SWISSPROT from Pichia stipitis is described as being an extremely serine rich protein-mucin-like protein.
Probab=29.62 E-value=30 Score=36.42 Aligned_cols=13 Identities=46% Similarity=0.519 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCCC
Q 004597 469 PGSSSGSESSSSS 481 (743)
Q Consensus 469 sgSSSSS~S~SsS 481 (743)
||||++++|+|+|
T Consensus 228 sGssgs~~SgSGS 240 (241)
T PF11596_consen 228 SGSSGSGSSGSGS 240 (241)
T ss_pred ccCCCCCCCcCCC
Confidence 4444444444443
No 180
>KOG2117 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.38 E-value=1.1e+02 Score=34.61 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 599 REREELELQKRKEKAR----LQAEAKAAEEARRQAEADAAVEARRK 640 (743)
Q Consensus 599 ~e~e~le~~q~eekar----~~a~~~aae~a~r~~~~~~~~e~~rk 640 (743)
.++|.|++.+..++-| |+.-+++|+ ||+.|++.+.|.+.+
T Consensus 81 kk~e~~~~~~~~~~r~kPkYi~nLie~ae--rRkkE~e~r~ERkl~ 124 (379)
T KOG2117|consen 81 KKREQLPRLRLREKRRKPKYIENLIEAAE--RRKKEQELRYERKLL 124 (379)
T ss_pred HHhhhhHhhhhhccccccHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4566666655555542 555555554 445555554444433
No 181
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.33 E-value=1.2e+03 Score=28.89 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 004597 388 TLRKLLDDYLEE 399 (743)
Q Consensus 388 eL~~yV~~~Lke 399 (743)
....||+.||+.
T Consensus 253 ~F~~Fvd~CLqK 264 (948)
T KOG0577|consen 253 YFRNFVDSCLQK 264 (948)
T ss_pred HHHHHHHHHHhh
Confidence 445667777654
No 182
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=28.88 E-value=4.3e+02 Score=27.97 Aligned_cols=6 Identities=33% Similarity=0.340 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004597 644 EREAAR 649 (743)
Q Consensus 644 ereaaR 649 (743)
|++.|+
T Consensus 113 E~~~a~ 118 (246)
T TIGR03321 113 EQAALS 118 (246)
T ss_pred HHHHHH
Confidence 333333
No 183
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=28.00 E-value=1.6e+02 Score=33.66 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=36.9
Q ss_pred HHHHHhhhcccChHHHHHHHHhhcCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHhhh
Q 004597 340 LGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLLDDYLEEKQKN 403 (743)
Q Consensus 340 L~~~I~~Lp~E~l~~II~II~~~~p~l~~~~~dEIEIDId~L~~~TL~eL~~yV~~~Lkek~K~ 403 (743)
|..+|..+..+. ..-.++-..+.|.+ +.+.+..-.-.-.|..+-++.|..-+.+-++..+|-
T Consensus 203 ~~R~LaQ~~~~~-R~~~e~~~~~~~ev-~a~E~~~r~~~~~l~Edq~~~LsE~~~k~~q~Le~~ 264 (593)
T KOG4807|consen 203 LERDLAQRSEER-RKWFEATDSRTPEV-PAGEGPRRGLGAPLTEDQQNRLSEEIEKKWQELEKL 264 (593)
T ss_pred HHHHHHHhhHHH-HHHHHhhhccCCcc-CcCcCcccccCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 455555554332 22233334445544 455666777778888888888887776666655544
No 184
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=27.74 E-value=5e+02 Score=25.76 Aligned_cols=13 Identities=8% Similarity=-0.066 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 004597 641 REVEREAARQALL 653 (743)
Q Consensus 641 re~ereaaR~al~ 653 (743)
-+.||+.|+.+|+
T Consensus 115 I~~e~~~a~~el~ 127 (167)
T PRK14475 115 IAQAEAQAAADVK 127 (167)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 185
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=27.71 E-value=1.7e+02 Score=34.44 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=5.6
Q ss_pred chhhHHhhhhh
Q 004597 665 SRFLEDLEMLR 675 (743)
Q Consensus 665 ~~~~~dle~l~ 675 (743)
..+-+|++.+.
T Consensus 331 ~~iAkD~qk~~ 341 (489)
T PF05262_consen 331 KEIAKDQQKLI 341 (489)
T ss_pred HHHHHHHHHHH
Confidence 33344666654
No 186
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.70 E-value=3.7e+02 Score=27.97 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=6.3
Q ss_pred HHHHHHhhhhhc
Q 004597 649 RQALLKMEKTVE 660 (743)
Q Consensus 649 R~al~~Mekt~~ 660 (743)
|.-|+..|+.-.
T Consensus 162 ~eVl~~ierskn 173 (227)
T KOG4691|consen 162 REVLQLIERSKN 173 (227)
T ss_pred HHHHHHHHHHhh
Confidence 344666666443
No 187
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=27.70 E-value=4.6e+02 Score=28.02 Aligned_cols=10 Identities=30% Similarity=0.282 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 004597 643 VEREAARQAL 652 (743)
Q Consensus 643 ~ereaaR~al 652 (743)
.|+++|..+|
T Consensus 112 ~Ek~~a~~~L 121 (250)
T PRK14474 112 REKQEFFKAL 121 (250)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 188
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=27.67 E-value=5.2e+02 Score=25.61 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 004597 641 REVEREAARQALLKMEKTV 659 (743)
Q Consensus 641 re~ereaaR~al~~Mekt~ 659 (743)
.++..+++..|++--+|.+
T Consensus 124 ~el~~e~~~lAv~~A~kil 142 (167)
T PRK14475 124 ADVKAAAVDLAAQAAETVL 142 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 189
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.46 E-value=2e+02 Score=30.24 Aligned_cols=9 Identities=56% Similarity=0.811 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 004597 636 EARRKREVE 644 (743)
Q Consensus 636 e~~rkre~e 644 (743)
|.+|+||-|
T Consensus 184 eRkr~re~e 192 (250)
T KOG1150|consen 184 ERKRQREEE 192 (250)
T ss_pred HHHHhHHHH
Confidence 333334333
No 190
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=27.06 E-value=4.5e+02 Score=25.71 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 004597 643 VEREAARQAL 652 (743)
Q Consensus 643 ~ereaaR~al 652 (743)
.|++.|+.+|
T Consensus 112 ~e~~~a~~~l 121 (159)
T PRK13461 112 REKEKAEYEI 121 (159)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 191
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.01 E-value=41 Score=39.83 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 004597 608 KRKEKARLQAE 618 (743)
Q Consensus 608 q~eekar~~a~ 618 (743)
|++.++-.||+
T Consensus 91 qk~~~~s~~~~ 101 (1103)
T KOG1420|consen 91 QKINNGSSQAD 101 (1103)
T ss_pred hhhhcccchhh
Confidence 45555544444
No 192
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=27.00 E-value=5.9e+02 Score=24.86 Aligned_cols=8 Identities=38% Similarity=0.439 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 004597 646 EAARQALL 653 (743)
Q Consensus 646 eaaR~al~ 653 (743)
+.+..|+.
T Consensus 124 ei~~lA~~ 131 (159)
T PRK13461 124 QAVDLAVL 131 (159)
T ss_pred HHHHHHHH
Confidence 33333333
No 193
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=26.90 E-value=5.8e+02 Score=24.60 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 004597 642 EVEREAARQALLKMEK 657 (743)
Q Consensus 642 e~ereaaR~al~~Mek 657 (743)
++..+++..|++-.+|
T Consensus 119 ~l~~~~~~lA~~~a~k 134 (156)
T PRK05759 119 ELRKQVADLAVAGAEK 134 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344443333
No 194
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=26.49 E-value=4.3e+02 Score=26.67 Aligned_cols=7 Identities=29% Similarity=0.207 Sum_probs=3.0
Q ss_pred chhhHHh
Q 004597 665 SRFLEDL 671 (743)
Q Consensus 665 ~~~~~dl 671 (743)
-.|+..|
T Consensus 103 ~~~l~~l 109 (198)
T PRK03963 103 FETLKAL 109 (198)
T ss_pred HHHHHHH
Confidence 3444443
No 195
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=26.01 E-value=1.6e+02 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 595 EKLRREREELELQKRKEKARLQAEAKAA 622 (743)
Q Consensus 595 ~kl~~e~e~le~~q~eekar~~a~~~aa 622 (743)
.||+.|.+.|.. .|.+-+...++|++-
T Consensus 14 ~~L~~EL~~L~~-~r~~i~~~i~~Ar~~ 40 (158)
T PRK05892 14 DHLEAELARLRA-RRDRLAVEVNDRGMI 40 (158)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHhC
Confidence 577777777754 344443333444433
No 196
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=25.65 E-value=3.4e+02 Score=34.55 Aligned_cols=13 Identities=54% Similarity=0.601 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 004597 618 EAKAAEEARRQAE 630 (743)
Q Consensus 618 ~~~aae~a~r~~~ 630 (743)
+++.+|+|||++|
T Consensus 849 ~~~~~ee~~r~~e 861 (1018)
T KOG2002|consen 849 IEKELEEARRKEE 861 (1018)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455566555
No 197
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.58 E-value=2.7e+02 Score=31.33 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004597 620 KAAEEARRQAEADAAVEARRKREVEREAARQALLKMEKTVE 660 (743)
Q Consensus 620 ~aae~a~r~~~~~~~~e~~rkre~ereaaR~al~~Mekt~~ 660 (743)
.++..+|+..+ =.+=++|-+.++|+--|+++.|.+-.|
T Consensus 233 eq~slkRt~Ee---L~~G~~kL~~~~etLEqq~~~L~~niD 270 (365)
T KOG2391|consen 233 EQESLKRTEEE---LNIGKQKLVAMKETLEQQLQSLQKNID 270 (365)
T ss_pred HHHHHHhhHHH---HHhhHHHHHHHHHHHHHHHHHHHhhhH
Confidence 35566666544 344455555566666677776665433
No 198
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=25.54 E-value=6.1e+02 Score=25.54 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=5.3
Q ss_pred cchhhhHHhhh
Q 004597 573 RFADTILKAKE 583 (743)
Q Consensus 573 rfadti~ka~~ 583 (743)
+.++.+..|+.
T Consensus 59 ~I~~~l~~Ae~ 69 (184)
T CHL00019 59 TILNTIRNSEE 69 (184)
T ss_pred HHHHHHHHHHH
Confidence 34455555554
No 199
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=25.44 E-value=1.1e+02 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004597 224 GTIKEKMASNAYSSPLEFLADVRLTFS 250 (743)
Q Consensus 224 ~TIkkKL~~~~Y~S~~eF~~DVrLIF~ 250 (743)
..|+..+..|.|.|..++++|.-.++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999977763
No 200
>PF05501 DUF755: Domain of unknown function (DUF755) ; InterPro: IPR008474 This family is predominated by ORFs from Anelloviridae. The function of this family remains to be determined.
Probab=25.40 E-value=51 Score=31.66 Aligned_cols=6 Identities=17% Similarity=0.761 Sum_probs=2.3
Q ss_pred HHHHHH
Q 004597 355 IIDFLR 360 (743)
Q Consensus 355 II~II~ 360 (743)
+++|++
T Consensus 54 L~~l~~ 59 (123)
T PF05501_consen 54 LMQLLQ 59 (123)
T ss_pred HHHHHH
Confidence 333333
No 201
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.36 E-value=1.5e+03 Score=29.00 Aligned_cols=7 Identities=57% Similarity=1.018 Sum_probs=3.7
Q ss_pred HHhhhhh
Q 004597 669 EDLEMLR 675 (743)
Q Consensus 669 ~dle~l~ 675 (743)
-|||.|.
T Consensus 346 tdlEILK 352 (1243)
T KOG0971|consen 346 TDLEILK 352 (1243)
T ss_pred HHHHHHH
Confidence 3555554
No 202
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=24.79 E-value=4.3e+02 Score=27.83 Aligned_cols=9 Identities=22% Similarity=-0.053 Sum_probs=3.8
Q ss_pred hhHHhhhhh
Q 004597 667 FLEDLEMLR 675 (743)
Q Consensus 667 ~~~dle~l~ 675 (743)
|..-||.+.
T Consensus 228 ~~~~le~~~ 236 (261)
T TIGR01933 228 ERLYLETME 236 (261)
T ss_pred HHHHHHHHH
Confidence 344444443
No 203
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=24.55 E-value=2.1e+02 Score=32.66 Aligned_cols=58 Identities=29% Similarity=0.353 Sum_probs=42.0
Q ss_pred hcccch---hhhHHhhhhc---ccCCCCCChhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 004597 570 LKNRFA---DTILKAKEKT---LSQGDKGDPEKLRREREELELQ------KRKEKARLQAEAKAAEEARR 627 (743)
Q Consensus 570 lk~rfa---dti~ka~~k~---l~~~~k~dp~kl~~e~e~le~~------q~eekar~~a~~~aae~a~r 627 (743)
||.||= -.|++||..+ |.....-|-++=++-|+.|++. |.+|-+.|-+|.|.-|++++
T Consensus 173 LKeRyY~v~r~l~kAr~~s~sdllk~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~KkiEarkk 242 (445)
T KOG2656|consen 173 LKERYYSVCRKLLKARAPSNSDLLKSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVELKKIEARKK 242 (445)
T ss_pred HHHHHHHHHHHHHHccCCCchhhhhccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 455554 3478888764 6677778888888888889864 78888888888885544443
No 204
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=23.91 E-value=3.1e+02 Score=27.38 Aligned_cols=12 Identities=8% Similarity=0.440 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 004597 607 QKRKEKARLQAE 618 (743)
Q Consensus 607 ~q~eekar~~a~ 618 (743)
+-.++++++..+
T Consensus 40 Rvee~r~~me~~ 51 (149)
T PF15346_consen 40 RVEEERKKMEKQ 51 (149)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 205
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=23.58 E-value=6.3e+02 Score=24.78 Aligned_cols=38 Identities=32% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004597 618 EAKAAEEARRQAEADAAVEARRKREVEREAARQALLKME 656 (743)
Q Consensus 618 ~~~aae~a~r~~~~~~~~e~~rkre~ereaaR~al~~Me 656 (743)
+..-++.||..++ +...++.++|-.|.+-++.|.+-+|
T Consensus 82 Ee~D~e~Ar~iqe-~l~r~~e~~r~~Ee~de~iA~~Lqe 119 (132)
T PF15295_consen 82 EEQDEEYAREIQE-ELQREAEEQRQQEEEDEEIARRLQE 119 (132)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4456677776665 3344444455555666666554443
No 206
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=23.57 E-value=1.3e+02 Score=29.46 Aligned_cols=18 Identities=50% Similarity=0.508 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 004597 595 EKLRREREELELQKRKEK 612 (743)
Q Consensus 595 ~kl~~e~e~le~~q~eek 612 (743)
.+|+.|.+.|....+-|=
T Consensus 8 ~~L~~el~~L~~~~r~~~ 25 (151)
T TIGR01462 8 EKLKEELEYLKTVKRPEI 25 (151)
T ss_pred HHHHHHHHHHHhcccHHH
Confidence 345555555544333333
No 207
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.51 E-value=5e+02 Score=30.18 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 004597 640 KREVEREAARQALLK 654 (743)
Q Consensus 640 kre~ereaaR~al~~ 654 (743)
+-+.||+.|+.+|+.
T Consensus 105 ~Ie~ek~~a~~elr~ 119 (445)
T PRK13428 105 QVQLLRAQLTRQLRL 119 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555543
No 208
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.16 E-value=1.7e+02 Score=33.76 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=8.8
Q ss_pred CChhHHHHHHHHHHHH
Q 004597 592 GDPEKLRREREELELQ 607 (743)
Q Consensus 592 ~dp~kl~~e~e~le~~ 607 (743)
....++++|+..++.+
T Consensus 199 ~kl~~~~~E~kk~~~~ 214 (420)
T COG4942 199 AKLAQLLEERKKTLAQ 214 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345566666666543
No 209
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=23.11 E-value=3.2e+02 Score=26.64 Aligned_cols=7 Identities=43% Similarity=0.553 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 004597 617 AEAKAAE 623 (743)
Q Consensus 617 a~~~aae 623 (743)
|+..|++
T Consensus 38 Aqe~~~~ 44 (137)
T PF09805_consen 38 AQEQAEE 44 (137)
T ss_pred HHHHHHH
Confidence 4444433
No 210
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=23.02 E-value=1.3e+02 Score=29.72 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 004597 638 RRKREVEREAARQALL 653 (743)
Q Consensus 638 ~rkre~ereaaR~al~ 653 (743)
-++++.|||.-|+.+.
T Consensus 54 ~~k~eaERe~mRq~IR 69 (139)
T PF05835_consen 54 HAKMEAEREKMRQHIR 69 (139)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4467888888888764
No 211
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=22.97 E-value=4.6e+02 Score=27.97 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004597 608 KRKEKARLQAEAKAAEEARRQA 629 (743)
Q Consensus 608 q~eekar~~a~~~aae~a~r~~ 629 (743)
..+|+.+|+..+..|+.+-++-
T Consensus 45 aeeea~~Le~k~~eaee~~~rL 66 (246)
T PF00769_consen 45 AEEEAEELEQKRQEAEEEKQRL 66 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555554444433
No 212
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=22.96 E-value=6.5e+02 Score=23.81 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhh
Q 004597 645 REAARQALLKME 656 (743)
Q Consensus 645 reaaR~al~~Me 656 (743)
.+.||..+....
T Consensus 103 ~~~a~~~i~~e~ 114 (140)
T PRK07353 103 KEKARREIEQQK 114 (140)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 213
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=22.81 E-value=3.2e+02 Score=28.86 Aligned_cols=8 Identities=38% Similarity=0.310 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 004597 611 EKARLQAE 618 (743)
Q Consensus 611 ekar~~a~ 618 (743)
++++.+|+
T Consensus 193 ~~~~~eae 200 (266)
T cd03404 193 ERLINEAE 200 (266)
T ss_pred HHHHHHHH
Confidence 33444443
No 214
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=22.74 E-value=6.8e+02 Score=27.98 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=9.9
Q ss_pred HHHhhhcccchhhhHHhhhh
Q 004597 565 YRATLLKNRFADTILKAKEK 584 (743)
Q Consensus 565 ~raa~lk~rfadti~ka~~k 584 (743)
-|+-+..+.--|--.++|..
T Consensus 123 ~~k~~v~~q~ed~~~kqRNR 142 (340)
T KOG3756|consen 123 ERKDLVLDQNEDSKSKQRNR 142 (340)
T ss_pred cchhhhhccCCChHHHHHhH
Confidence 34444444445555555554
No 215
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=22.73 E-value=1.6e+02 Score=34.71 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004597 613 ARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALLKMEK 657 (743)
Q Consensus 613 ar~~a~~~aae~a~r~~~~~~~~e~~rkre~ereaaR~al~~Mek 657 (743)
.+-||+-++...|+.+|+ .++|.|+++..++|+..+|-+
T Consensus 506 ~~eq~ekkkek~anqka~------kk~kkelrkaeekqk~ae~se 544 (591)
T KOG2505|consen 506 EREQAEKKKEKKANQKAK------KKLKKELRKAEEKQKYAEMSE 544 (591)
T ss_pred HHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555443 445566666666677666644
No 216
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=22.72 E-value=5.9e+02 Score=27.35 Aligned_cols=47 Identities=30% Similarity=0.285 Sum_probs=27.6
Q ss_pred cccchhhhHHhhhhcccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 571 KNRFADTILKAKEKTLSQGDKGDPEKLRREREELELQKRKEKARLQAEAKAA 622 (743)
Q Consensus 571 k~rfadti~ka~~k~l~~~~k~dp~kl~~e~e~le~~q~eekar~~a~~~aa 622 (743)
...+...+.+|++++=. --+++|.+.|++...-++|++++..+++++
T Consensus 76 ~~~a~~~l~~~~~ea~~-----~l~~a~~q~e~~~~ea~~e~e~~~~~a~~e 122 (281)
T PRK06669 76 EEEAKEELLKKTDEASS-----IIEKLQMQIEREQEEWEEELERLIEEAKAE 122 (281)
T ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777765322 124667777777666666666665555544
No 217
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=22.59 E-value=1.4e+02 Score=34.00 Aligned_cols=55 Identities=27% Similarity=0.426 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 597 LRREREELELQKRK--EKARLQAEAKAA-----EEARRQAEADAAVEARRKREVEREAARQA 651 (743)
Q Consensus 597 l~~e~e~le~~q~e--ekar~~a~~~aa-----e~a~r~~~~~~~~e~~rkre~ereaaR~a 651 (743)
+++|+++-|.+++| .|||-+....+. +....+.+.|...+.+++|+.+|-.+|.+
T Consensus 309 a~kek~~kE~kL~elAQkAR~~r~g~~~~~~~ked~e~~~R~eiR~~Rrke~~~~~nlsra~ 370 (506)
T KOG2441|consen 309 AEKEKEEKEQKLRELAQKAREERGGPQTGAIEKEDREARTREEIRRDRRKEREKDRNLSRAA 370 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhhhc
No 218
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.37 E-value=7.3e+02 Score=25.75 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=6.0
Q ss_pred cchhhhHHhhh
Q 004597 573 RFADTILKAKE 583 (743)
Q Consensus 573 rfadti~ka~~ 583 (743)
+.++.|-.|..
T Consensus 88 ~I~~~L~~Ae~ 98 (204)
T PRK09174 88 RIAQDLDQAAR 98 (204)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 219
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=22.21 E-value=4.9e+02 Score=31.30 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 004597 602 EELELQKRKEKARLQA 617 (743)
Q Consensus 602 e~le~~q~eekar~~a 617 (743)
++.+...+||+-.+.|
T Consensus 252 k~i~~~rkeerlk~l~ 267 (782)
T PF07218_consen 252 KEIEEKRKEERLKMLA 267 (782)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3333333333333333
No 220
>PRK12472 hypothetical protein; Provisional
Probab=21.93 E-value=3.8e+02 Score=31.61 Aligned_cols=56 Identities=34% Similarity=0.443 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 004597 596 KLRREREELELQ-----------------KRKEKARLQAEAKAAEEARRQAEADAAVEARRK-REVEREAARQA 651 (743)
Q Consensus 596 kl~~e~e~le~~-----------------q~eekar~~a~~~aae~a~r~~~~~~~~e~~rk-re~ereaaR~a 651 (743)
||++.+.+-+.. .+.+.+.-.|+.++++++.+-..|++.+|+|+. -.--.+|||.+
T Consensus 229 ~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~a~~~a 302 (508)
T PRK12472 229 KLERAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAA 302 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 221
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.83 E-value=7.2e+02 Score=24.96 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 004597 641 REVEREAARQAL 652 (743)
Q Consensus 641 re~ereaaR~al 652 (743)
-+.||+.|+.+|
T Consensus 132 I~~ek~~a~~~l 143 (184)
T PRK13455 132 IASAEAAAVKAV 143 (184)
T ss_pred HHHHHHHHHHHH
Confidence 333344443333
No 222
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=21.80 E-value=4e+02 Score=26.86 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 004597 608 KRKEKARLQAEA 619 (743)
Q Consensus 608 q~eekar~~a~~ 619 (743)
|++|..|+-.++
T Consensus 43 ~~~e~~r~v~ea 54 (175)
T COG4741 43 QKAERERLVNEA 54 (175)
T ss_pred HHHHHHHHHHHH
Confidence 444555554444
No 223
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=21.75 E-value=5.9e+02 Score=26.49 Aligned_cols=58 Identities=33% Similarity=0.394 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhhh
Q 004597 600 EREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRK-------------REVEREAARQALLKMEKT 658 (743)
Q Consensus 600 e~e~le~~q~eekar~~a~~~aae~a~r~~~~~~~~e~~rk-------------re~ereaaR~al~~Mekt 658 (743)
+.+.+...||+=-.|..++..+||..-|+-=.+++.|.++. -|+||+.-++ +.+|||+
T Consensus 85 ~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq-~lE~Ek~ 155 (192)
T PF09727_consen 85 ELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQ-QLEQEKA 155 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 56677788899999999999999988887766766666554 3677776664 5566664
No 224
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=21.71 E-value=5.6e+02 Score=28.27 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCc
Q 004597 550 GESAPNERQVSP 561 (743)
Q Consensus 550 ~~~~~~~~~~sp 561 (743)
|+=+-++..|-|
T Consensus 121 gdLFDFd~EV~P 132 (291)
T PF06098_consen 121 GDLFDFDEEVKP 132 (291)
T ss_pred ccccchHhhhhh
Confidence 443445555555
No 225
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=21.68 E-value=1.6e+02 Score=33.54 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 615 LQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALLK 654 (743)
Q Consensus 615 ~~a~~~aae~a~r~~~~~~~~e~~rkre~ereaaR~al~~ 654 (743)
|+++.+++...=.. +.+.|+.-|-|||+||++|++
T Consensus 79 i~~qlr~~rtel~~-----a~~~k~~~e~er~~~~~El~~ 113 (499)
T COG4372 79 IRPQLRALRTELGT-----AQGEKRAAETEREAARSELQK 113 (499)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
No 226
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.09 E-value=4.9e+02 Score=29.33 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=5.4
Q ss_pred HHHHhhhhhc
Q 004597 651 ALLKMEKTVE 660 (743)
Q Consensus 651 al~~Mekt~~ 660 (743)
++-+.|.-|+
T Consensus 202 yI~~LEsKVq 211 (401)
T PF06785_consen 202 YIGKLESKVQ 211 (401)
T ss_pred HHHHHHHHHH
Confidence 3555566554
No 227
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=20.84 E-value=2.3e+02 Score=32.78 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 597 LRREREELELQKRKEKARLQAEAKAAE 623 (743)
Q Consensus 597 l~~e~e~le~~q~eekar~~a~~~aae 623 (743)
.++|+|+.-++.+.+|.-|.-++++.+
T Consensus 219 ~~hekeee~~rr~agkE~~~~~a~~~e 245 (506)
T KOG2507|consen 219 VEHEKEEEPLRRQAGKEPIRPTAPGTE 245 (506)
T ss_pred HHHHhhhhhHhhhhcccccccccccch
Confidence 456666666666666654444444333
No 228
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=20.78 E-value=5.9e+02 Score=28.01 Aligned_cols=8 Identities=25% Similarity=0.314 Sum_probs=3.8
Q ss_pred hHHhhhhh
Q 004597 668 LEDLEMLR 675 (743)
Q Consensus 668 ~~dle~l~ 675 (743)
.+-||.|.
T Consensus 287 ~~~le~~~ 294 (317)
T TIGR01932 287 WRSLEAYE 294 (317)
T ss_pred HHHHHHHH
Confidence 44455544
No 229
>PF12848 ABC_tran_2: ABC transporter
Probab=20.60 E-value=5.5e+02 Score=22.03 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 597 LRREREELELQKRKEKARLQAEAKAAEEARRQ 628 (743)
Q Consensus 597 l~~e~e~le~~q~eekar~~a~~~aae~a~r~ 628 (743)
-...+++....+..+....+.+++..++.-++
T Consensus 18 y~~~k~~~~~~~~~~~~~~~k~~~~l~~~i~r 49 (85)
T PF12848_consen 18 YLEQKEERRERQERQYEKQQKEIKRLEEFIRR 49 (85)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555444444333
No 230
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=20.54 E-value=3.4e+02 Score=26.92 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004597 595 EKLRREREELELQKRKEKARLQAEAKAA 622 (743)
Q Consensus 595 ~kl~~e~e~le~~q~eekar~~a~~~aa 622 (743)
+||+.|.+.| +..++.++.+++++|
T Consensus 11 ~~L~~El~~L---~~~~r~~~~~~i~~A 35 (156)
T TIGR01461 11 EKLKQELNYL---WREERPEVTQKVTWA 35 (156)
T ss_pred HHHHHHHHHH---HhcccHHHHHHHHHH
Confidence 3455554444 444555555554444
No 231
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=20.40 E-value=5.5e+02 Score=24.32 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.3
Q ss_pred HHHHhh
Q 004597 564 LYRATL 569 (743)
Q Consensus 564 ~~raa~ 569 (743)
++|...
T Consensus 19 ~f~~~~ 24 (108)
T PF03879_consen 19 AFRPKS 24 (108)
T ss_pred cccccc
Confidence 333333
No 232
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=20.35 E-value=5.4e+02 Score=28.23 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004597 595 EKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALLKMEKTVE 660 (743)
Q Consensus 595 ~kl~~e~e~le~~q~eekar~~a~~~aae~a~r~~~~~~~~e~~rkre~ereaaR~al~~Mekt~~ 660 (743)
.+++.++++.|.+++-+++++.|++++--.+.|.-+ ..-+++-|+...|.=..-|+-..-|+.
T Consensus 159 ~r~~t~~~eaeL~~e~~~~k~~AEa~gra~~eReN~---Di~l~~l~~ka~e~R~t~lesI~t~f~ 221 (276)
T PF12037_consen 159 QRRQTEEEEAELRRETERAKAEAEAEGRAKEERENE---DINLEQLRLKAEEERETVLESINTTFS 221 (276)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHHHHHHHH
No 233
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=20.33 E-value=2e+02 Score=27.43 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=18.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHH
Q 004597 588 QGDKGDPEKLRREREELELQKRK 610 (743)
Q Consensus 588 ~~~k~dp~kl~~e~e~le~~q~e 610 (743)
.++..|+++++..++++|.++.+
T Consensus 83 ~~~~id~~~a~~~~~~ae~~l~~ 105 (130)
T TIGR01216 83 FADDIDEAEAEKALEAAEKLLES 105 (130)
T ss_pred EcccCCHHHHHHHHHHHHHHHhh
Confidence 46678999999998888887653
Done!