Query 004597
Match_columns 743
No_of_seqs 336 out of 1484
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 18:35:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004597.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1896-1900//hhsearch_pdb/004597hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fkm_X Signaling protein; brom 1.0 1 1 207.9 12.7 108 173-280 16-123 (166)
2 4alg_A Bromodomain-containing 1.0 1 1 204.4 12.3 106 175-280 29-134 (154)
3 2ouo_A HUNK1 protein, bromodom 1.0 1 1 204.0 10.7 106 175-280 19-127 (130)
4 2oss_A HUNK1 protein, bromodom 1.0 1 1 201.5 13.9 106 175-280 18-123 (127)
5 3jvl_A Bromodomain-containing 1.0 1 1 197.8 8.9 106 175-280 6-114 (120)
6 3mb3_A PH-interacting protein; 1.0 1 1 197.4 11.8 108 175-284 18-126 (135)
7 3g0l_A Hwalp4, bromodomain adj 1.0 1 1 197.1 14.1 104 177-282 12-115 (117)
8 3p1f_A CREB-binding protein; s 1.0 1 1 194.7 13.3 110 174-283 7-117 (119)
9 3aad_A Transcription initiatio 1.0 1 1 194.7 8.3 105 176-282 45-149 (292)
10 2d9e_A Peregrin; four-helix bu 1.0 1 1 194.4 12.4 106 177-284 6-111 (121)
No 1
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=1.00 E-value=1 Score=207.94 Aligned_cols=108 Identities=32% Similarity=0.548 Sum_probs=103.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99839999999999999991899877778867333589970212059999789999984299999999999999999844
Q 004597 173 GTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (743)
Q Consensus 173 ~~~~~~~~k~C~~IL~~L~~~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIk~KL~~~~Y~S~~eF~~DVrLIF~NA 252 (743)
......|.+.|..||..|++|+.+|+|..|||+.++++||||.+|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 96419999999999999985889712148898232449978876689999999999972799979999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2309999989999999999999999999
Q 004597 253 MTYNPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
++||++++.||.+|..|+++|++.|+.+
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 96 SLYNTSNSVVAITGKNIETYFNNQLIVM 123 (166)
T ss_dssp HHSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9987999999999999999999999986
No 2
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=1.00 E-value=1 Score=204.42 Aligned_cols=106 Identities=39% Similarity=0.676 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 83999999999999999189987777886733358997021205999978999998429999999999999999984423
Q 004597 175 GNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (743)
Q Consensus 175 ~~~~~~k~C~~IL~~L~~~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIk~KL~~~~Y~S~~eF~~DVrLIF~NA~~ 254 (743)
...++...|..||+.|++|+.+|+|..|||+.++++||||++|++||||+||++||.++.|.++.+|..||+|||.||++
T Consensus 29 ~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 108 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYI 108 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 50999999999999998586853205789913224987898838998899999998548999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 09999989999999999999999999
Q 004597 255 YNPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 255 YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
||++++.||.+|..|+++|+..|+.+
T Consensus 109 YN~~~s~i~~~A~~L~~~f~~~~~~l 134 (154)
T 4alg_A 109 YNKPTDDIVLMAQTLEKIFLQKVASM 134 (154)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 87999999999999999999999978
No 3
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=1.00 E-value=1 Score=204.02 Aligned_cols=106 Identities=42% Similarity=0.731 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 839999999999999991899---87777886733358997021205999978999998429999999999999999984
Q 004597 175 GNVILMKQCETLLKRLMSHQY---GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSN 251 (743)
Q Consensus 175 ~~~~~~k~C~~IL~~L~~~~~---a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIk~KL~~~~Y~S~~eF~~DVrLIF~N 251 (743)
.....++.|..||..|+.++. +|+|..|||+..+++||||++|++||||+||++||.++.|.++.+|..||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 56999999999999999677635578753789903236985898818988899999999868999899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42309999989999999999999999999
Q 004597 252 AMTYNPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 252 A~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
|++||++++.||.+|..|+++|+..|+.+
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99986999999999999999999999877
No 4
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=1.00 E-value=1 Score=201.50 Aligned_cols=106 Identities=42% Similarity=0.758 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 83999999999999999189987777886733358997021205999978999998429999999999999999984423
Q 004597 175 GNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (743)
Q Consensus 175 ~~~~~~k~C~~IL~~L~~~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIk~KL~~~~Y~S~~eF~~DVrLIF~NA~~ 254 (743)
...++...|..||..|++|+.+|+|..|||+.++++||||++|++||||+||++||.++.|.++.+|..||+|||.||++
T Consensus 18 ~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 97 (127)
T 2oss_A 18 QTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYI 97 (127)
T ss_dssp CCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 59999999999999999495546444899823235864898827999999999999869999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 09999989999999999999999999
Q 004597 255 YNPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 255 YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
||+++|.+|.+|..|++.|++.|+.+
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 98 YNKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 87999999999999999999999977
No 5
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=1.00 E-value=1 Score=197.80 Aligned_cols=106 Identities=42% Similarity=0.732 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 839999999999999991899---87777886733358997021205999978999998429999999999999999984
Q 004597 175 GNVILMKQCETLLKRLMSHQY---GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSN 251 (743)
Q Consensus 175 ~~~~~~k~C~~IL~~L~~~~~---a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIk~KL~~~~Y~S~~eF~~DVrLIF~N 251 (743)
....++++|..||..|++++. +|+|..|||+..+++||||++|++||||+||++||.++.|.++.+|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 12999999999999998676765253631899903148998899858999999999998269998999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42309999989999999999999999999
Q 004597 252 AMTYNPPGNDFHIMADTLRKFFEARWKAI 280 (743)
Q Consensus 252 A~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (743)
|++||++++.+|.+|..|+++|+..|+.+
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99987999999999999999999999877
No 6
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=1.00 E-value=1 Score=197.42 Aligned_cols=108 Identities=36% Similarity=0.618 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 83999999999999999189987777886733358997021205999978999998429999999999999999984423
Q 004597 175 GNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (743)
Q Consensus 175 ~~~~~~k~C~~IL~~L~~~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIk~KL~~~~Y~S~~eF~~DVrLIF~NA~~ 254 (743)
....|.+.|..||..|++|+.+|+|..|||+. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||++
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHH--HCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999998298876656899923--2798899937985899999998179999999999999999999999
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0999-99899999999999999999999628
Q 004597 255 YNPP-GNDFHIMADTLRKFFEARWKAIEKKL 284 (743)
Q Consensus 255 YN~~-~s~V~~~A~~L~~~Fe~~~k~i~~k~ 284 (743)
||++ ++.||.+|..|+++|+..|+.+...+
T Consensus 96 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 96 YTPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp HSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7889898999999999999999999999989
No 7
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=1.00 E-value=1 Score=197.14 Aligned_cols=104 Identities=36% Similarity=0.671 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999918998777788673335899702120599997899999842999999999999999998442309
Q 004597 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 177 ~~~~k~C~~IL~~L~~~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIk~KL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
...++.|..||..|++|+.+|+|..|||+. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN 89 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCCCCHH--HCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998498966652859865--558828785899999999999807999799999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999996
Q 004597 257 PPGNDFHIMADTLRKFFEARWKAIEK 282 (743)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~k~i~~ 282 (743)
++++.+|.+|..|+++|++.|+.+.+
T Consensus 90 ~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 90 EDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999883
No 8
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=1.00 E-value=1 Score=194.68 Aligned_cols=110 Identities=30% Similarity=0.492 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9839999999999999991-899877778867333589970212059999789999984299999999999999999844
Q 004597 174 TGNVILMKQCETLLKRLMS-HQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (743)
Q Consensus 174 ~~~~~~~k~C~~IL~~L~~-~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIk~KL~~~~Y~S~~eF~~DVrLIF~NA 252 (743)
.....+.+.|..+|..|++ ++.+|+|..|||+..+++||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 7 ~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (119)
T 3p1f_A 7 FKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNA 86 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999999999981988734228899410359978899659998999999982699989999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2309999989999999999999999999962
Q 004597 253 MTYNPPGNDFHIMADTLRKFFEARWKAIEKK 283 (743)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~~k~i~~k 283 (743)
++||+++|.+|.+|..|+.+|++.|..+.+.
T Consensus 87 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 87 WLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987999999999999999999999999875
No 9
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=194.67 Aligned_cols=105 Identities=28% Similarity=0.498 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 39999999999999991899877778867333589970212059999789999984299999999999999999844230
Q 004597 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (743)
Q Consensus 176 ~~~~~k~C~~IL~~L~~~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIk~KL~~~~Y~S~~eF~~DVrLIF~NA~~Y 255 (743)
...+...|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||+++.|.++.+|..||+|||.||++|
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~y 122 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCCCCCH--HCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7899999999999998098555436889901--05568988078678789998862798599999999987888889997
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998999999999999999999996
Q 004597 256 NPPGNDFHIMADTLRKFFEARWKAIEK 282 (743)
Q Consensus 256 N~~~s~V~~~A~~L~~~Fe~~~k~i~~ 282 (743)
|++++.+|.+|..|..+|+..|+.+..
T Consensus 123 N~~~s~i~~~A~~L~~~~~~~~~~~~~ 149 (292)
T 3aad_A 123 NGPKHSLTQISQSMLDLCDEKLKEKED 149 (292)
T ss_dssp TCSSSHHHHHHTHHHHTTTTTGGGSHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 587308999999888888865110000
No 10
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=194.44 Aligned_cols=106 Identities=28% Similarity=0.402 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999918998777788673335899702120599997899999842999999999999999998442309
Q 004597 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (743)
Q Consensus 177 ~~~~k~C~~IL~~L~~~~~a~~F~~PVD~~~~~~PdY~~iIk~PMDL~TIk~KL~~~~Y~S~~eF~~DVrLIF~NA~~YN 256 (743)
.++...|..||..|++|+.+|+|..|||+. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHCCCCCCC--CCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 589999999999998298548657969700--068889883898679999999866999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999899999999999999999999628
Q 004597 257 PPGNDFHIMADTLRKFFEARWKAIEKKL 284 (743)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~k~i~~k~ 284 (743)
++++.+|.+|..|++.|+..|..+.+.+
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~ 111 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQA 111 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999
Done!