Query 004600
Match_columns 743
No_of_seqs 237 out of 315
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04782 DUF632: Protein of un 100.0 4E-112 8E-117 900.7 33.2 310 299-609 1-312 (312)
2 PF04783 DUF630: Protein of un 99.9 2.2E-23 4.8E-28 172.2 6.8 60 1-60 1-60 (60)
3 KOG1924 RhoA GTPase effector D 99.0 5.1E-09 1.1E-13 120.7 13.2 49 15-63 474-522 (1102)
4 KOG1924 RhoA GTPase effector D 98.2 1.3E-05 2.9E-10 93.4 14.7 26 451-476 801-826 (1102)
5 KOG1923 Rac1 GTPase effector F 95.8 0.028 6E-07 66.8 8.6 11 434-444 517-527 (830)
6 cd07599 BAR_Rvs167p The Bin/Am 95.7 2.9 6.2E-05 43.1 22.2 179 516-726 16-196 (216)
7 cd07591 BAR_Rvs161p The Bin/Am 95.1 2.6 5.7E-05 44.1 19.6 157 516-727 25-192 (224)
8 cd07676 F-BAR_FBP17 The F-BAR 94.7 7.1 0.00015 41.7 21.7 187 533-731 29-230 (253)
9 PF03114 BAR: BAR domain; Int 93.3 9.5 0.00021 37.9 20.3 183 516-729 40-226 (229)
10 cd07653 F-BAR_CIP4-like The F- 92.9 14 0.00029 38.7 21.4 62 669-730 166-227 (251)
11 cd07680 F-BAR_PACSIN1 The F-BA 91.4 24 0.00051 38.1 21.2 60 665-725 169-228 (258)
12 KOG2675 Adenylate cyclase-asso 90.2 0.43 9.3E-06 54.1 5.4 24 35-58 182-205 (480)
13 PF05308 Mito_fiss_reg: Mitoch 90.1 0.65 1.4E-05 49.6 6.5 15 97-111 198-212 (253)
14 cd07675 F-BAR_FNBP1L The F-BAR 88.5 39 0.00085 36.4 21.6 130 595-732 93-230 (252)
15 cd07671 F-BAR_PSTPIP1 The F-BA 88.3 39 0.00084 36.0 19.9 143 529-698 25-187 (242)
16 PF01213 CAP_N: Adenylate cycl 87.2 0.32 7E-06 53.3 1.9 23 36-58 179-201 (312)
17 cd07598 BAR_FAM92 The Bin/Amph 87.1 42 0.00091 35.1 20.8 177 516-736 11-207 (211)
18 PF05308 Mito_fiss_reg: Mitoch 87.1 1.8 4E-05 46.3 7.4 27 7-36 114-140 (253)
19 COG5178 PRP8 U5 snRNP spliceos 87.0 0.39 8.5E-06 59.4 2.6 27 528-554 659-685 (2365)
20 cd07604 BAR_ASAPs The Bin/Amph 86.9 44 0.00095 35.1 20.5 202 508-731 8-212 (215)
21 KOG3671 Actin regulatory prote 86.6 1.5 3.3E-05 50.5 6.8 9 345-353 536-544 (569)
22 cd07307 BAR The Bin/Amphiphysi 85.6 22 0.00049 33.9 13.5 107 381-487 77-187 (194)
23 cd07657 F-BAR_Fes_Fer The F-BA 83.8 64 0.0014 34.3 21.0 199 515-728 7-225 (237)
24 cd07672 F-BAR_PSTPIP2 The F-BA 82.3 73 0.0016 33.9 20.0 182 516-727 15-223 (240)
25 smart00721 BAR BAR domain. 80.0 74 0.0016 32.4 19.9 191 518-730 29-236 (239)
26 cd07627 BAR_Vps5p The Bin/Amph 79.6 81 0.0018 32.7 19.7 194 513-728 8-214 (216)
27 cd07603 BAR_ACAPs The Bin/Amph 79.1 84 0.0018 32.6 22.8 154 517-726 17-188 (200)
28 KOG1925 Rac1 GTPase effector F 78.1 4.1 8.9E-05 47.2 6.0 31 383-413 431-461 (817)
29 cd07593 BAR_MUG137_fungi The B 78.1 96 0.0021 32.7 19.3 177 517-731 8-208 (215)
30 KOG1830 Wiskott Aldrich syndro 77.4 8.8 0.00019 43.8 8.2 12 315-326 483-494 (518)
31 PHA03211 serine/threonine kina 77.4 5.2 0.00011 46.0 6.8 14 88-101 48-61 (461)
32 PF03114 BAR: BAR domain; Int 77.4 52 0.0011 32.6 13.2 97 382-486 116-219 (229)
33 cd07642 BAR_ASAP2 The Bin/Amph 76.9 1.1E+02 0.0023 32.5 21.9 199 510-731 10-212 (215)
34 PHA03247 large tegument protei 76.8 7.3 0.00016 52.8 8.3 9 52-60 2540-2548(3151)
35 cd07655 F-BAR_PACSIN The F-BAR 76.3 1.1E+02 0.0025 32.6 20.0 55 670-725 174-228 (258)
36 cd07636 BAR_GRAF The Bin/Amphi 76.2 1.1E+02 0.0023 32.2 20.7 40 515-554 15-54 (207)
37 smart00721 BAR BAR domain. 76.1 34 0.00073 34.9 11.7 89 397-485 137-227 (239)
38 cd07637 BAR_ACAP3 The Bin/Amph 74.0 1.2E+02 0.0025 31.6 22.8 56 590-645 54-125 (200)
39 cd07596 BAR_SNX The Bin/Amphip 72.0 66 0.0014 32.0 12.4 56 404-459 120-176 (218)
40 KOG2675 Adenylate cyclase-asso 71.6 7.5 0.00016 44.5 5.9 16 37-52 198-213 (480)
41 PRK09752 adhesin; Provisional 71.6 3.6 7.8E-05 52.0 3.8 10 320-329 1174-1183(1250)
42 cd07639 BAR_ACAP1 The Bin/Amph 70.6 1.4E+02 0.0031 31.2 21.4 34 517-550 17-50 (200)
43 cd07673 F-BAR_FCHO2 The F-BAR 70.1 1.2E+02 0.0025 32.8 14.4 84 384-476 117-200 (269)
44 cd07634 BAR_GAP10-like The Bin 69.8 1.5E+02 0.0033 31.2 20.2 39 516-554 16-54 (207)
45 cd07633 BAR_OPHN1 The Bin/Amph 69.2 1.6E+02 0.0034 31.1 21.4 38 517-554 17-54 (207)
46 COG5178 PRP8 U5 snRNP spliceos 69.0 4 8.7E-05 51.2 3.3 28 380-407 612-639 (2365)
47 cd07596 BAR_SNX The Bin/Amphip 67.6 1.4E+02 0.0029 29.8 19.8 114 514-641 9-137 (218)
48 PF09325 Vps5: Vps5 C terminal 67.4 1.5E+02 0.0033 30.3 21.3 184 514-728 29-234 (236)
49 cd07590 BAR_Bin3 The Bin/Amphi 67.1 1.8E+02 0.0038 30.9 20.9 91 573-690 64-164 (225)
50 cd07602 BAR_RhoGAP_OPHN1-like 66.7 1.7E+02 0.0038 30.7 22.5 39 516-554 16-54 (207)
51 PF01213 CAP_N: Adenylate cycl 65.1 4.7 0.0001 44.5 2.7 13 37-49 194-206 (312)
52 PF15195 TMEM210: TMEM210 fami 63.4 4.5 9.8E-05 37.4 1.8 7 54-60 58-64 (116)
53 cd07635 BAR_GRAF2 The Bin/Amph 62.1 2.1E+02 0.0046 30.1 21.8 38 517-554 17-54 (207)
54 cd07307 BAR The Bin/Amphiphysi 60.9 1.5E+02 0.0033 28.1 23.2 31 518-548 9-39 (194)
55 PF09325 Vps5: Vps5 C terminal 60.1 76 0.0017 32.5 10.4 92 404-495 138-230 (236)
56 cd07620 BAR_SH3BP1 The Bin/Amp 59.1 2.7E+02 0.0059 30.3 21.3 153 578-732 84-238 (257)
57 KOG1916 Nuclear protein, conta 58.6 5E+02 0.011 33.3 17.9 64 419-498 842-906 (1283)
58 PF14644 DUF4456: Domain of un 58.2 2.3E+02 0.0051 29.3 15.5 104 617-732 84-187 (208)
59 cd07686 F-BAR_Fer The F-BAR (F 56.0 2.2E+02 0.0048 30.5 13.0 46 381-427 6-55 (234)
60 PF10168 Nup88: Nuclear pore c 54.1 2E+02 0.0044 35.5 14.0 81 616-719 560-640 (717)
61 PRK11546 zraP zinc resistance 53.7 35 0.00076 33.9 6.2 59 402-470 51-109 (143)
62 cd07638 BAR_ACAP2 The Bin/Amph 53.2 2.9E+02 0.0063 28.9 21.5 30 518-547 11-40 (200)
63 cd07606 BAR_SFC_plant The Bin/ 52.5 3E+02 0.0064 28.8 21.2 36 514-549 13-48 (202)
64 cd07601 BAR_APPL The Bin/Amphi 51.4 3.2E+02 0.007 28.9 21.4 35 516-550 16-50 (215)
65 PF12408 DUF3666: Ribose-5-pho 49.9 16 0.00034 30.0 2.6 29 297-325 4-32 (48)
66 cd07589 BAR_DNMBP The Bin/Amph 48.4 3.2E+02 0.0069 28.0 18.2 45 676-728 131-175 (195)
67 KOG0162 Myosin class I heavy c 47.0 56 0.0012 40.1 7.5 13 99-111 995-1007(1106)
68 KOG1925 Rac1 GTPase effector F 45.3 18 0.00038 42.3 3.1 16 48-63 184-199 (817)
69 PF04782 DUF632: Protein of un 44.7 3.4E+02 0.0074 30.3 12.8 84 595-704 76-162 (312)
70 KOG3771 Amphiphysin [Intracell 42.5 6.4E+02 0.014 29.7 15.0 80 517-609 45-124 (460)
71 cd07659 BAR_PICK1 The Bin/Amph 40.7 1.3E+02 0.0029 31.8 8.3 65 400-464 105-169 (215)
72 cd07613 BAR_Endophilin_A1 The 38.6 5.2E+02 0.011 27.6 14.8 127 577-732 90-217 (223)
73 PF10475 DUF2450: Protein of u 38.1 4.6E+02 0.01 28.4 12.5 134 395-542 71-207 (291)
74 cd07652 F-BAR_Rgd1 The F-BAR ( 38.0 5.1E+02 0.011 27.4 22.3 51 675-725 169-219 (234)
75 PF05384 DegS: Sensor protein 36.3 4.7E+02 0.01 26.5 14.3 132 575-716 17-152 (159)
76 TIGR03545 conserved hypothetic 35.8 6.9E+02 0.015 30.1 14.3 131 394-546 181-311 (555)
77 PF13805 Pil1: Eisosome compon 35.3 3.8E+02 0.0082 29.5 11.0 72 415-500 152-223 (271)
78 cd07614 BAR_Endophilin_A2 The 35.2 5.8E+02 0.013 27.2 14.1 120 576-731 89-216 (223)
79 cd07600 BAR_Gvp36 The Bin/Amph 34.1 6.2E+02 0.013 27.2 19.8 64 574-637 103-170 (242)
80 smart00509 TFS2N Domain in the 33.6 73 0.0016 27.9 4.5 55 430-486 18-74 (75)
81 KOG3397 Acetyltransferases [Ge 33.5 31 0.00067 35.5 2.4 8 21-28 102-109 (225)
82 cd07588 BAR_Amphiphysin The Bi 33.4 5.9E+02 0.013 26.8 17.2 80 517-610 27-107 (211)
83 cd07594 BAR_Endophilin_B The B 33.2 6.3E+02 0.014 27.0 19.0 118 516-635 17-154 (229)
84 cd07617 BAR_Endophilin_B2 The 32.5 6.4E+02 0.014 26.9 14.8 62 576-637 94-156 (220)
85 PF11802 CENP-K: Centromere-as 32.4 4.5E+02 0.0097 28.9 10.9 19 472-490 20-38 (268)
86 cd07632 BAR_APPL2 The Bin/Amph 32.0 6.5E+02 0.014 26.8 16.0 24 591-614 59-82 (215)
87 KOG4503 Uncharacterized conser 31.7 58 0.0013 34.3 4.1 39 573-611 146-187 (230)
88 COG5085 Predicted membrane pro 31.7 58 0.0013 34.3 4.1 39 573-611 146-187 (230)
89 PF06637 PV-1: PV-1 protein (P 31.6 1.6E+02 0.0035 33.7 7.7 19 7-25 308-326 (442)
90 cd07659 BAR_PICK1 The Bin/Amph 31.2 6.7E+02 0.015 26.7 15.9 162 452-639 2-179 (215)
91 smart00872 Alpha-mann_mid Alph 31.1 94 0.002 27.1 4.8 52 432-488 7-58 (79)
92 cd03568 VHS_STAM VHS domain fa 30.4 2E+02 0.0043 28.3 7.4 88 449-552 37-130 (144)
93 cd07664 BAR_SNX2 The Bin/Amphi 30.1 6.3E+02 0.014 26.9 11.6 93 400-496 132-224 (234)
94 cd07673 F-BAR_FCHO2 The F-BAR 29.5 7.5E+02 0.016 26.7 18.9 44 670-714 156-199 (269)
95 PF08655 DASH_Ask1: DASH compl 29.4 95 0.0021 27.1 4.4 49 438-486 2-56 (66)
96 KOG4657 Uncharacterized conser 29.1 6.5E+02 0.014 27.2 11.1 83 596-696 43-128 (246)
97 KOG4849 mRNA cleavage factor I 28.9 1.5E+02 0.0033 33.6 6.8 21 524-544 452-472 (498)
98 PF08654 DASH_Dad2: DASH compl 28.6 1.7E+02 0.0036 27.6 6.2 31 699-729 47-77 (103)
99 PF04065 Not3: Not1 N-terminal 28.5 3.2E+02 0.0069 29.3 9.0 95 585-699 8-102 (233)
100 KOG2008 BTK-associated SH3-dom 28.2 2.3E+02 0.005 31.8 8.0 82 380-464 148-233 (426)
101 cd07610 FCH_F-BAR The Extended 28.1 5.9E+02 0.013 25.1 11.9 93 386-487 88-181 (191)
102 cd07624 BAR_SNX7_30 The Bin/Am 27.3 6.9E+02 0.015 25.6 18.3 166 516-727 21-197 (200)
103 cd07674 F-BAR_FCHO1 The F-BAR 27.1 7.2E+02 0.016 26.5 11.6 35 402-436 124-158 (261)
104 cd07627 BAR_Vps5p The Bin/Amph 27.1 5E+02 0.011 26.9 10.1 59 402-460 116-175 (216)
105 cd07651 F-BAR_PombeCdc15_like 27.0 7.4E+02 0.016 25.8 20.5 46 670-716 156-201 (236)
106 cd07617 BAR_Endophilin_B2 The 26.8 5.5E+02 0.012 27.4 10.3 80 398-499 137-217 (220)
107 PF14228 MOR2-PAG1_mid: Cell m 26.6 8.3E+02 0.018 32.0 13.6 94 523-639 312-408 (1120)
108 PF07111 HCR: Alpha helical co 26.3 9.6E+02 0.021 29.9 13.2 121 603-731 272-407 (739)
109 cd07631 BAR_APPL1 The Bin/Amph 25.2 8.5E+02 0.018 26.0 20.7 97 517-645 17-129 (215)
110 PF12709 Kinetocho_Slk19: Cent 25.1 5.5E+02 0.012 23.7 11.0 54 583-639 2-56 (87)
111 PF02970 TBCA: Tubulin binding 24.2 5.4E+02 0.012 23.4 8.5 54 407-460 20-80 (90)
112 TIGR02131 phaP_Bmeg polyhydrox 23.6 7.6E+02 0.016 24.8 14.4 123 576-726 10-133 (165)
113 cd07674 F-BAR_FCHO1 The F-BAR 23.4 9.2E+02 0.02 25.7 19.8 43 672-715 151-193 (261)
114 cd07604 BAR_ASAPs The Bin/Amph 23.2 8.9E+02 0.019 25.5 21.0 37 516-552 2-38 (215)
115 KOG2300 Uncharacterized conser 22.8 8.2E+02 0.018 29.4 11.4 151 389-553 176-382 (629)
116 PF06632 XRCC4: DNA double-str 22.7 5.9E+02 0.013 28.8 10.2 21 665-685 188-208 (342)
117 cd07623 BAR_SNX1_2 The Bin/Amp 22.5 9E+02 0.019 25.2 11.9 88 404-496 126-214 (224)
118 KOG1785 Tyrosine kinase negati 22.5 1.6E+02 0.0034 34.0 5.6 15 81-95 474-488 (563)
119 KOG2070 Guanine nucleotide exc 22.0 1.2E+03 0.026 28.0 12.5 29 532-560 106-134 (661)
120 cd07623 BAR_SNX1_2 The Bin/Amp 21.6 9.3E+02 0.02 25.1 20.1 41 512-552 15-55 (224)
121 cd07647 F-BAR_PSTPIP The F-BAR 21.3 9.6E+02 0.021 25.2 22.6 23 531-553 27-49 (239)
122 cd07643 I-BAR_IMD_MIM Inverse 20.8 1.1E+03 0.023 25.5 13.5 103 458-592 14-118 (231)
123 KOG1916 Nuclear protein, conta 20.7 1.1E+03 0.024 30.5 12.4 43 674-727 931-974 (1283)
124 KOG3397 Acetyltransferases [Ge 20.7 79 0.0017 32.7 2.6 8 13-20 108-115 (225)
125 PF10669 Phage_Gp23: Protein g 20.7 4E+02 0.0086 25.2 6.9 68 394-462 42-109 (121)
126 cd07645 I-BAR_IMD_BAIAP2L1 Inv 20.6 1.1E+03 0.023 25.4 18.1 30 522-551 12-41 (226)
127 PF03938 OmpH: Outer membrane 20.0 7.9E+02 0.017 23.6 12.1 28 618-645 40-67 (158)
No 1
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=100.00 E-value=3.8e-112 Score=900.74 Aligned_cols=310 Identities=41% Similarity=0.716 Sum_probs=292.8
Q ss_pred cHHHHHHHHHHHHHHhhcchhhHHhhhhhcccCCCCcccccccccccccccceeecccccccCCCCCcchhhhccccchh
Q 004600 299 SLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLED 378 (743)
Q Consensus 299 dL~ev~keId~~F~kAsesg~eVs~mLEa~k~~y~~~~~~~r~~~~~Sskv~~~itW~~S~~~~~~~~~~~~~~~~~~~~ 378 (743)
||++||||||+||+|||+||+|||+||||+|++||++|...+++.++|++|+++|||+||+++. ........++.+.+.
T Consensus 1 dl~ev~kei~~~F~kAs~sg~eVs~lLE~~k~~~~~~~~~~~~~~~~s~~~~~~~~w~~s~~s~-~~~~~~~~~~~~~~~ 79 (312)
T PF04782_consen 1 DLLEVVKEIDDYFLKASESGKEVSRLLEAGKIHYHSNFSDLKGKVDHSSRVLSPISWSRSSSSR-ISNSDSDFDEEECMG 79 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCcccccccccccchhhhccccccCCCCCCc-ccccccCcCcccCcc
Confidence 7999999999999999999999999999999999999999998889999999999999998773 111112222233456
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhh
Q 004600 379 YETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEV 458 (743)
Q Consensus 379 ~~shssTLdKLyAWEKKLY~EVKa~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I 458 (743)
+|+||||||||||||||||+|||++|+||++|||||++||+||+||+++.+|||||++|++|+|||+|+||+||+||++|
T Consensus 80 ~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I 159 (312)
T PF04782_consen 80 SGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKGADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRI 159 (312)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 459 NRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNH 538 (743)
Q Consensus 459 ~kLRDeEL~PQL~ELi~GL~~MWk~M~ecHq~Q~~ii~~~k~L~~~~s~~~tse~h~~aT~qLE~el~~W~ssF~~~I~~ 538 (743)
+||||+||||||+|||+||++|||+|+||||+|++||+++|+|+++.++.+|+++||+||+|||.||++||+|||+||++
T Consensus 160 ~kLRDeEL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~~sF~~~i~~ 239 (312)
T PF04782_consen 160 EKLRDEELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWHSSFCKWIKA 239 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc--ccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q 004600 539 QKQFIQALTSWLKLNL--IPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTI 609 (743)
Q Consensus 539 Qk~YV~aLn~WL~l~l--~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v~~AIksF~~~v~~i 609 (743)
||+||+||||||++|+ .|+++.++.+++||+|.++||||+||++|+++||+||+++|++|||+|+++||+|
T Consensus 240 Qk~YV~aLn~WL~~~l~~~~~~~~~~~~~~sp~~~~aPpIf~lC~~W~~aLd~lp~k~v~~AIk~f~~~v~~i 312 (312)
T PF04782_consen 240 QKSYVKALNGWLKLCLMQEPEETSDGRPPSSPRRSGAPPIFVLCNDWSQALDRLPDKEVSEAIKSFAAVVHHI 312 (312)
T ss_pred HHHHHHHHHHHHHHhccccccccccCCCCCCccccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 9999999999999999 4778888888999999999999999999999999999999999999999999986
No 2
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=99.88 E-value=2.2e-23 Score=172.24 Aligned_cols=60 Identities=58% Similarity=0.907 Sum_probs=59.0
Q ss_pred CCCCccccchHHHHHHhHHHHHHHHHHHHHhHHHHhhHhhHHHHHHhhhhhhhhhccCcc
Q 004600 1 MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGES 60 (743)
Q Consensus 1 Mgc~~Skve~e~~v~rckeRkr~~k~av~aR~~fAAaH~~Y~~sLr~tgaALrdFaegEs 60 (743)
|||++||||+||+|++|||||+|||+||.+|++||+||.+|++|||++|++|++|+++|+
T Consensus 1 MGC~~SK~d~eeaV~~CkeRkr~~k~Av~~R~~lAaaH~aY~~SLr~~g~aL~~F~~~et 60 (60)
T PF04783_consen 1 MGCSQSKLDDEEAVSLCKERKRLMKQAVDARYALAAAHAAYIQSLRNVGAALRQFAEGET 60 (60)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999875
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=5.1e-09 Score=120.74 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=30.9
Q ss_pred HHhHHHHHHHHHHHHHhHHHHhhHhhHHHHHHhhhhhhhhhccCcccCC
Q 004600 15 ARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGESVDN 63 (743)
Q Consensus 15 ~rckeRkr~~k~av~aR~~fAAaH~~Y~~sLr~tgaALrdFaegEs~~p 63 (743)
+++-+-...+.+...+|++.++-.......++..-+....+.+..+.++
T Consensus 474 qkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~s~~~~~~ 522 (1102)
T KOG1924|consen 474 QKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALSSPSQLLP 522 (1102)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhccCcccCCC
Confidence 3455555566677888888776655555566656666666666655554
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.25 E-value=1.3e-05 Score=93.42 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=17.6
Q ss_pred hHHHHHhhhccccchhhHHHHHHHHH
Q 004600 451 MDSSVSEVNRLRDEELYPKLVALVNG 476 (743)
Q Consensus 451 vdsiS~~I~kLRDeEL~PQL~ELi~G 476 (743)
|-+.+.+-+.||-.|=|-.|+|||--
T Consensus 801 i~avt~ACEE~rkSesFs~lLeLvLl 826 (1102)
T KOG1924|consen 801 IVAVTAACEELRKSESFSKLLELVLL 826 (1102)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44555556667777888888777754
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.81 E-value=0.028 Score=66.78 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=5.4
Q ss_pred HHHHHhhhhhH
Q 004600 434 KAAVAHLHTKY 444 (743)
Q Consensus 434 ra~Vk~L~Tri 444 (743)
+..|++|+.|+
T Consensus 517 lskIErle~kl 527 (830)
T KOG1923|consen 517 LSKIERLEEKL 527 (830)
T ss_pred hhhhhhhHHHH
Confidence 34455555554
No 6
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=95.74 E-value=2.9 Score=43.09 Aligned_cols=179 Identities=21% Similarity=0.329 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHH
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIA 595 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v 595 (743)
..+..|-.++..|..++....++|.+++.++.+=.. |..... ..+.+++ ..+.....|++|..+++.|-. .+
T Consensus 16 ~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~----p~~~~~-~~~~~~~--~~~~~~~~~~~y~~~~~~l~~-~~ 87 (216)
T cd07599 16 KSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYD----PIVGPK-ESVGSHP--APESTLARLSRYVKALEELKK-EL 87 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcCCCC-cCcCCCC--CcHHHHHHHHHHHHHHHHHHH-HH
Confidence 356778899999999999999999999988776543 332111 1111111 134477889999999998843 33
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccchhhhccCCCCCCCCchhhhHHHH
Q 004600 596 KSAISSFAAVIKTIMLHQEEEM-KLKEKCEETRKELLRKTHAYEEWHRKYKK-THSEESEAERGDDANTRDPVLDRQIVI 673 (743)
Q Consensus 596 ~~AIksF~~~v~~i~~~Q~eE~-kqk~k~e~~~KeleKK~~~l~~~~~k~~~-~~~~~~~~~~~~~~~~~~~v~ekk~~l 673 (743)
..-+..|...| ..-..+. .+=..+..+-|.-++|+-.+++..+++.. .. +....+ .....+|
T Consensus 88 ~~~l~~i~~~V----~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~-------~k~~~~-----~kd~~kl 151 (216)
T cd07599 88 LEELEFFEERV----ILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQ-------KKKELS-----LKDEKQL 151 (216)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-------cCCCCC-----hhHHHHH
Confidence 33333333221 1111111 11111222223333444444444444421 00 000111 1223466
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHH
Q 004600 674 ESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEK 726 (743)
Q Consensus 674 e~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~ 726 (743)
....++++..++.|... .+.|+.-||.+|.....|-..|+.+|=-
T Consensus 152 ~kae~~l~~a~~~y~~l--------N~~Lk~eLP~l~~~~~~~~~~~~~~~~~ 196 (216)
T cd07599 152 AKLERKLEEAKEEYEAL--------NELLKSELPKLLALADEFLPPLFKSFYY 196 (216)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888887754 4678999999999999999999887643
No 7
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=95.14 E-value=2.6 Score=44.13 Aligned_cols=157 Identities=20% Similarity=0.284 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHH
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIA 595 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v 595 (743)
..+..|-.++..|..++..+.++|....++|.+ .+.|..+. ....+|..|...++.|.+..+
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~----lY~p~~~~--------------~~~~~~~~y~~~v~~l~~~~~ 86 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQARIAETISS----FYGDAGDK--------------DGAMLSQEYKQAVEELDAETV 86 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCc--------------cHhHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999886 12243211 124688999888888754333
Q ss_pred HH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCC
Q 004600 596 KS-----------AISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRD 664 (743)
Q Consensus 596 ~~-----------AIksF~~~v~~i~~~Q~eE~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~ 664 (743)
.+ =|..|.+.+..|- .+-|.-++|.-.+++..+++.. ..+ .. .++
T Consensus 87 ~el~~~~~~~V~~Pl~~~~~~~~~i~--------------k~IkKR~~KllDYD~~~~k~~k--l~~-----K~---~kd 142 (224)
T cd07591 87 KELDGPYRQTVLDPIGRFNSYFPEIN--------------EAIKKRNHKLLDYDAARAKVRK--LID-----KP---SED 142 (224)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHH--------------HHHHHHHhhHhhHHHHHHHHHH--HHh-----cc---cCC
Confidence 22 2222222222221 1112222333333333333210 000 00 011
Q ss_pred chhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHH
Q 004600 665 PVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKL 727 (743)
Q Consensus 665 ~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l 727 (743)
+ .+|....+.++..++.|... .+-|+.-||.+|.+-..|-..|+++|=.+
T Consensus 143 ~-----~kL~kae~el~~a~~~Ye~l--------N~~Lk~ELP~l~~~r~~~l~~~f~s~~~i 192 (224)
T cd07591 143 P-----TKLPRAEKELDEAKEVYETL--------NDQLKTELPQLVDLRIPYLDPSFEAFVKI 192 (224)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 46777777888877777754 36788899999998888877777766544
No 8
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.69 E-value=7.1 Score=41.73 Aligned_cols=187 Identities=7% Similarity=0.059 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHH------
Q 004600 533 EKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVI------ 606 (743)
Q Consensus 533 ~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v~~AIksF~~~v------ 606 (743)
..=..--++|-+.|..|-++...-... ..+ .-|.|.+|..|...|..+- .+...=..|+..+
T Consensus 29 kERa~IEkeYakkL~~L~kKy~~kk~~-----~~~-----~~~~~t~~~aw~~~l~e~~--~~A~~H~~~~~~L~~~v~~ 96 (253)
T cd07676 29 KERTEIELSYAKQLRNLSKKYQPKKNS-----KEE-----EEYKYTSCRAFLMTLNEMN--DYAGQHEVISENLASQIIV 96 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-----ccc-----ccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 333456799999999999986421100 000 1245788999997665432 1111112222222
Q ss_pred --HHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-chh----hhc-cCCCCCCCCchhhhHHHHHHHH
Q 004600 607 --KTIMLHQEEEMK-LKEKCEETRKELLRKTHAYEEWHRKYKKTHS-EES----EAE-RGDDANTRDPVLDRQIVIESLR 677 (743)
Q Consensus 607 --~~i~~~Q~eE~k-qk~k~e~~~KeleKK~~~l~~~~~k~~~~~~-~~~----~~~-~~~~~~~~~~v~ekk~~le~lr 677 (743)
+.+......+++ .--+...+.+++++....|+.--.+|...-- .+. ... +.+..-.+..+..=+..++...
T Consensus 97 ~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~ 176 (253)
T cd07676 97 ELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRH 176 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHH
Confidence 222221222211 1112334455555555555554444432100 000 000 0111112223333344444455
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004600 678 KRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSIT 731 (743)
Q Consensus 678 krleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s 731 (743)
.-++.-+..|...+..++...-.-...-||.||+.|-+|-...+.-+.++....
T Consensus 177 ~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~ 230 (253)
T cd07676 177 QMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTY 230 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777889999999997777667778999999888777766666666655443
No 9
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=93.27 E-value=9.5 Score=37.88 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCCh
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQK---QFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPD 592 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk---~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpd 592 (743)
..+..|...+..|..++.+++.++. .-.+.|..+|............ -..+..-|......|..+=.
T Consensus 40 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----------~~~~l~~~~~~~~~i~~~~~ 109 (229)
T PF03114_consen 40 ESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSS----------LGNALEKFGEAMQEIEEARK 109 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccch----------hhhHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777 3333444455432211110000 01244444444444433222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCchhhhHH
Q 004600 593 EIAKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQI 671 (743)
Q Consensus 593 k~v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~ekk~ 671 (743)
......-..|..-+..++ .+-.+ .+.+++.+...-||++-...+.....+ +. . ..+..
T Consensus 110 ~~~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~----~~-------------~---~~~~~ 168 (229)
T PF03114_consen 110 ELESQIESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKK----KS-------------K---SSKEE 168 (229)
T ss_dssp HHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----SS-------------B---THHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hc-------------c---cccHH
Confidence 222222233334444444 22222 334444444444444444333321110 00 0 01134
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 672 VIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRS 729 (743)
Q Consensus 672 ~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~ 729 (743)
+++..+...+.....+...+...-.+....|...|..++++...|...+.+.+++|..
T Consensus 169 ~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~ 226 (229)
T PF03114_consen 169 KLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQP 226 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555666666777777777777777777776654
No 10
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=92.92 E-value=14 Score=38.72 Aligned_cols=62 Identities=10% Similarity=0.156 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 669 RQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSI 730 (743)
Q Consensus 669 kk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~ 730 (743)
.+..+......++.-+..|..++..++..--.-....||.||+.|..|=...++.+.++...
T Consensus 166 ~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~ 227 (251)
T cd07653 166 AKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQ 227 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445555555666778898888888665555567899999998887777766666665443
No 11
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=91.37 E-value=24 Score=38.09 Aligned_cols=60 Identities=8% Similarity=0.139 Sum_probs=43.6
Q ss_pred chhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHH
Q 004600 665 PVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYE 725 (743)
Q Consensus 665 ~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye 725 (743)
-+..-+..++.++.-+++-+..|...+...... -..-..-+|.||+.+-.|=..-+.-+.
T Consensus 169 q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~-~~~y~~~m~~vfd~~Q~~Ee~Ri~flk 228 (258)
T cd07680 169 QQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKT-TPQYMENMEQVFEQCQQFEEKRLVFLK 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445678888888999999999999999766 466777888888877665444443333
No 12
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=90.20 E-value=0.43 Score=54.09 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=18.2
Q ss_pred HhhHhhHHHHHHhhhhhhhhhccC
Q 004600 35 ASGHSGYSFALKNVGAALSDFAHG 58 (743)
Q Consensus 35 AAaH~~Y~~sLr~tgaALrdFaeg 58 (743)
-.-|..+.+++.+.=..|+.|...
T Consensus 182 D~~hveWvKa~l~l~~eL~~YVk~ 205 (480)
T KOG2675|consen 182 DPRHVEWVKAYLALFLELQAYVKE 205 (480)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888765
No 13
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=90.11 E-value=0.65 Score=49.63 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=8.5
Q ss_pred CCCchhhhccCCCcc
Q 004600 97 FSPSPIKRAASLPVI 111 (743)
Q Consensus 97 ~sp~pl~r~~s~p~~ 111 (743)
+++.+++++.+++++
T Consensus 198 pp~~~l~~s~s~~~l 212 (253)
T PF05308_consen 198 PPPPSLQPSCSAIDL 212 (253)
T ss_pred CCccccCcccchHHH
Confidence 334447777766643
No 14
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=88.52 E-value=39 Score=36.37 Aligned_cols=130 Identities=8% Similarity=0.136 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhcccchhhhccCCCCCCCCch
Q 004600 595 AKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYE-------EWHRKYKKTHSEESEAERGDDANTRDPV 666 (743)
Q Consensus 595 v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~-------~~~~k~~~~~~~~~~~~~~~~~~~~~~v 666 (743)
|+..|..|+..+......+-.+ .+..+-.+..-++|+|-.+.++ ...+++.... .+....+..+
T Consensus 93 v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~--------~d~~~tk~~~ 164 (252)
T cd07675 93 VYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLD--------NDTNATKSDV 164 (252)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCcccCHHHH
Confidence 5556677777777766666332 2222223333333333333332 2222221100 1111122333
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004600 667 LDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQ 732 (743)
Q Consensus 667 ~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s~ 732 (743)
..-+..++....-.|+-+..|...+..++...----..-||.||+-|-+|-..-+.-+.+++..+.
T Consensus 165 eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~ 230 (252)
T cd07675 165 EKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFA 230 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555567778899999999854444444455999999999988877777777766543
No 15
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=88.29 E-value=39 Score=35.99 Aligned_cols=143 Identities=11% Similarity=0.144 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhcc---CCh--HHHHHHHHHHH
Q 004600 529 HTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEK---LPD--EIAKSAISSFA 603 (743)
Q Consensus 529 ~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdr---lpd--k~v~~AIksF~ 603 (743)
...|..=+..-++|-+.|..|-++.+- ...+..+...|...+.- +.+ ..+...|.+-+
T Consensus 25 ~~f~keRa~iE~~Yak~L~kl~kk~~~-----------------~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~ 87 (242)
T cd07671 25 EELLKQRAQAEERYGKELVQIARKAGG-----------------QTEINTLKASFDQLKQQIENIGNSHIQLAGMLREEL 87 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC-----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677889999999999998541 11246788888776633 221 33444455544
Q ss_pred HHHHHHHHhhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCchhh
Q 004600 604 AVIKTIMLHQEEEMK---------------LKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLD 668 (743)
Q Consensus 604 ~~v~~i~~~Q~eE~k---------------qk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~e 668 (743)
.-|..+...|.++.+ +-++++...|.|+..-+..+...+.+... .... ....+..
T Consensus 88 ~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~---------~~~~-t~keleK 157 (242)
T cd07671 88 KSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERS---------SSTG-NPKQSEK 157 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hccC-CHHHHHH
Confidence 334555555544322 22334444555555554444432221100 0111 1122444
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 004600 669 RQIVIESLRKRLEEETEAFRRHCLQVREKS 698 (743)
Q Consensus 669 kk~~le~lrkrleeE~~~h~k~v~~tr~~t 698 (743)
-+.++..++..++.-+..|..+|......+
T Consensus 158 ~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~ 187 (242)
T cd07671 158 SQNKAKQCRDAATEAERVYKQNIEQLDKAR 187 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777778889998888654433
No 16
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=87.17 E-value=0.32 Score=53.35 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=15.8
Q ss_pred hhHhhHHHHHHhhhhhhhhhccC
Q 004600 36 SGHSGYSFALKNVGAALSDFAHG 58 (743)
Q Consensus 36 AaH~~Y~~sLr~tgaALrdFaeg 58 (743)
..|..+.+++.+.=.+|++|...
T Consensus 179 ~~hveWvks~~~l~~~L~~YVke 201 (312)
T PF01213_consen 179 PKHVEWVKSFKALLKELQAYVKE 201 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777543
No 17
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.15 E-value=42 Score=35.13 Aligned_cols=177 Identities=14% Similarity=0.202 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--cccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCC--
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLI--PIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLP-- 591 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~--p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlp-- 591 (743)
+..-.||.-+...|+.|..|+...+.+-.++-.--+-+.. -.| +|.+-.-...|...+.+|.
T Consensus 11 ~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E--------------~~~L~~~L~~lae~~~~i~d~ 76 (211)
T cd07598 11 ERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTE--------------NPSLKQGLKNFAECLAALQDY 76 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--------------CHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999998887776653221 111 3445566666666666666
Q ss_pred --------hHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcccchhhhc
Q 004600 592 --------DEIAKSAISSFAAVIKTIM-------LHQEEEMKLKEKCEETRKELLR-KTHAYEEWHRKYKKTHSEESEAE 655 (743)
Q Consensus 592 --------dk~v~~AIksF~~~v~~i~-------~~Q~eE~kqk~k~e~~~KeleK-K~~~l~~~~~k~~~~~~~~~~~~ 655 (743)
...+++-|+.|...|.++- ..|..+.+++.+.+.+. .-.+ -...+.+|+.
T Consensus 77 ~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~~leklk-~~~~~d~~~i~eaE~------------- 142 (211)
T cd07598 77 RQAEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKELKQLKQLEKLR-QKNPSDRQIISQAES------------- 142 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCchhhHHHHHHH-------------
Confidence 2334455555555443221 23333333333222220 0000 0000011111
Q ss_pred cCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004600 656 RGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQN 735 (743)
Q Consensus 656 ~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s~~~~ 735 (743)
.|..=+...+...+.+++|+.++.+. -+.-|+..|-....++..|....++.|-.++....+.|
T Consensus 143 ---------~l~~a~~d~~r~s~~l~ee~~rFe~~-------k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~~~ 206 (211)
T cd07598 143 ---------ELQKASVDANRSTKELEEQMDNFEKQ-------KIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQNID 206 (211)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11222224445555666666666643 24678888999999999999999998888887766654
Q ss_pred C
Q 004600 736 S 736 (743)
Q Consensus 736 ~ 736 (743)
.
T Consensus 207 ~ 207 (211)
T cd07598 207 E 207 (211)
T ss_pred c
Confidence 3
No 18
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=87.13 E-value=1.8 Score=46.31 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=12.7
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHHhHHHHh
Q 004600 7 KIDNEEAVARSKDRRNLMKDAVSARNAFAS 36 (743)
Q Consensus 7 kve~e~~v~rckeRkr~~k~av~aR~~fAA 36 (743)
+.-+++|+++-- -|=.++...|.+.|+
T Consensus 114 ~~~~~~AlqKIs---ALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 114 LPANEAALQKIS---ALEDELSRLRAQIAK 140 (253)
T ss_pred cCCCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 444666665532 233344445555443
No 19
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=86.99 E-value=0.39 Score=59.39 Aligned_cols=27 Identities=11% Similarity=0.335 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004600 528 WHTEFEKFVNHQKQFIQALTSWLKLNL 554 (743)
Q Consensus 528 W~ssF~~~I~~Qk~YV~aLn~WL~l~l 554 (743)
|.-+..-|...-|+-|--|-.||-.-+
T Consensus 659 W~p~WRvWlfflRG~iPLLeRyignLv 685 (2365)
T COG5178 659 WGPQWRVWLFFLRGHIPLLERYIGNLV 685 (2365)
T ss_pred ccHHHHHHHHHHhcccHHHHHHHhHHH
Confidence 888888899999999999999998533
No 20
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=86.91 E-value=44 Score=35.11 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=107.4
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHh
Q 004600 508 KETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYL 587 (743)
Q Consensus 508 ~~tse~h~~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aL 587 (743)
+...+.|+.....|-.-+...+.+-..++++++.|+.+|..-=..|+-..+.. ++ -.|.-+-.=...|
T Consensus 8 ee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~----------i~--~~l~kF~~~l~El 75 (215)
T cd07604 8 EESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEED----------LG--AAFLKFSVFTKEL 75 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHH----------HH--HHHHHHHHHHHHH
Confidence 44566777777777777777888888889999999999887333232111000 00 0122222222223
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCc
Q 004600 588 EKLPDEIAKSAISSFAAVIKTIMLHQEEEM--KLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDP 665 (743)
Q Consensus 588 drlpdk~v~~AIksF~~~v~~i~~~Q~eE~--kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 665 (743)
..+-+.-+..+-..+..-+.+++.-+-... -.|+++|..+++||+....+.+. +..+.. .++.-+.+.
T Consensus 76 ~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~-------Kk~~~~---~~~~~r~e~ 145 (215)
T cd07604 76 AALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKE-------KKQLAK---EAGMIRTEI 145 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchhhh---hhhhcchhh
Confidence 333333333444444444444444433331 34556666666666654444331 111000 000000000
Q ss_pred -hhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004600 666 -VLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSIT 731 (743)
Q Consensus 666 -v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s 731 (743)
..|=-..|+.-|+......-.|--.+..+.+.---.+-..|-..|+|...|-....++++++.-+.
T Consensus 146 ~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~ 212 (215)
T cd07604 146 TGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI 212 (215)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 122233667777777777777776666666655555556677788888888888888877776544
No 21
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=86.65 E-value=1.5 Score=50.51 Aligned_cols=9 Identities=22% Similarity=0.124 Sum_probs=4.1
Q ss_pred cccccceee
Q 004600 345 HSARVMRVI 353 (743)
Q Consensus 345 ~Sskv~~~i 353 (743)
...++|..+
T Consensus 536 al~~~m~ar 544 (569)
T KOG3671|consen 536 ALANLMDAR 544 (569)
T ss_pred HHHHHHHHH
Confidence 344555443
No 22
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=85.56 E-value=22 Score=33.88 Aligned_cols=107 Identities=16% Similarity=0.293 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH----HhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHH
Q 004600 381 TLAIVLDKMLAWEKKLFEEV----KRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVS 456 (743)
Q Consensus 381 shssTLdKLyAWEKKLY~EV----Ka~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~ 456 (743)
.....++-|..|-++.+..| |..+..|.+||.....+.++..++.+..++..+...+.....++.-...-+-..-.
T Consensus 77 ~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~ 156 (194)
T cd07307 77 LENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLN 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666665544444 57889999999999999988777656666666666666665555544444433334
Q ss_pred hhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 004600 457 EVNRLRDEELYPKLVALVNGMAKMWENMCIH 487 (743)
Q Consensus 457 ~I~kLRDeEL~PQL~ELi~GL~~MWk~M~ec 487 (743)
.+..-|-.++.+.|..+++.....|+.+++-
T Consensus 157 ~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~ 187 (194)
T cd07307 157 KLEEKRKELFLSLLLSFIEAQSEFFKEVLKI 187 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444444577888888888887777776553
No 23
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=83.81 E-value=64 Score=34.27 Aligned_cols=199 Identities=13% Similarity=0.175 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccC
Q 004600 515 HERTEELFTVVQKWHTEFEKF----VNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKL 590 (743)
Q Consensus 515 ~~aT~qLE~el~~W~ssF~~~----I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrl 590 (743)
|.|-+.+-.-=..|-..+.+| ...-++|-+.|..=-+... .+ .+|. ..|.+.+|..|...|+.+
T Consensus 7 h~~l~~~~~~ei~lLe~i~~F~reRa~iE~EYA~~L~~L~kq~~------k~---~~~~---~~~~s~~~~sW~~iL~et 74 (237)
T cd07657 7 HEALLKRQDAELRLLETMKKYMAKRAKSDREYASTLGSLANQGL------KI---EAGD---DLQGSPISKSWKEIMDST 74 (237)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------cC---CCcc---cCCcChHHHHHHHHHHHH
Confidence 445555544444454444444 4567899999876543310 01 1111 123667789999998764
Q ss_pred ChHH-------------HHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cchhhh
Q 004600 591 PDEI-------------AKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYEEWHRKYKKTH--SEESEA 654 (743)
Q Consensus 591 pdk~-------------v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~--~~~~~~ 654 (743)
-+-. +...|..+......+..+..++ .++....+...+||+|..+.++...+-....+ .....
T Consensus 75 e~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~- 153 (237)
T cd07657 75 DQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAV- 153 (237)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3321 1223444445555554444333 23344444555556555555544322111110 00000
Q ss_pred ccCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Q 004600 655 ERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLR 728 (743)
Q Consensus 655 ~~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~ 728 (743)
......+-.|...+..+.....++..-+..|.-++..++..--.-...-||.||..|-++--....+..++.
T Consensus 154 --~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l 225 (237)
T cd07657 154 --VKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKIL 225 (237)
T ss_pred --hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001112233344444444455666667777777777666677778899999999887777666655543
No 24
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=82.32 E-value=73 Score=33.88 Aligned_cols=182 Identities=9% Similarity=0.044 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhcc---CCh
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEK---LPD 592 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdr---lpd 592 (743)
+-..++-.+|..+ |..=+..-++|.+.|..|-+++.. |.+.+=.|+..|...+.- +..
T Consensus 15 ~~g~~~~~el~~f---~kERA~IE~~YaK~L~kLskk~~~----------------g~~E~GTl~~sw~~~~~E~e~~a~ 75 (240)
T cd07672 15 NDGRKNCKEFEDF---LKERASIEEKYGKELLNLSKKKPC----------------GQTEINTLKRSLDVFKQQIDNVGQ 75 (240)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCC----------------CCcccchHHHHHHHHHHHHHHHHH
Confidence 3344554455443 334567789999999999997531 011222777888765433 222
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhc
Q 004600 593 --EIAKSAISSFAAVIKTIMLHQEEEMK---------------LKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAE 655 (743)
Q Consensus 593 --k~v~~AIksF~~~v~~i~~~Q~eE~k---------------qk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~ 655 (743)
..+++.|..-+.-|..+...|.++.+ +-++++...+.|++..+..+...+.+. .
T Consensus 76 ~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~-~-------- 146 (240)
T cd07672 76 SHIQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVN-R-------- 146 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--------
Confidence 23444555444445555444444322 122333444444444443333222211 0
Q ss_pred cCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhh---hhhhcccHHHHHHHHH----HHHHHHHHHHHH
Q 004600 656 RGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSL---GSLKLRLPDLFRAVSD----FAHASFDAYEKL 727 (743)
Q Consensus 656 ~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl---~sLq~gLp~VFqAl~~----Fs~~~~~aye~l 727 (743)
.+.......+..-+.+|+.++..++.-...|..+|......+. .... ..=.+||.|+. |...++=.|-++
T Consensus 147 -~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~-~~c~~fq~lEeeRi~f~k~~lw~~~n~ 223 (240)
T cd07672 147 -NANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHV-KACEFFEKQECERINFFRNAVWTHVNQ 223 (240)
T ss_pred -ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0000111122233467788888888888899999888765542 1111 33456776663 555555555443
No 25
>smart00721 BAR BAR domain.
Probab=79.96 E-value=74 Score=32.40 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh----------ccccccCcccCCCCCCCCCCCCcHHHHHHHHH
Q 004600 518 TEELFTVVQKWHTEFEKFVNHQKQFI---QALTSWLKL----------NLIPIESSLKERVTSPPRAPNPPIQALLHSWH 584 (743)
Q Consensus 518 T~qLE~el~~W~ssF~~~I~~Qk~YV---~aLn~WL~l----------~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~ 584 (743)
-.+||..+........++++.=+.|+ .++..=+.- ++.+.+ .. +......++...+....
T Consensus 29 f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~-----~~~~~~~~~~~~l~~~~ 101 (239)
T smart00721 29 FEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGD--DG-----EGLGADSSYGKALDKLG 101 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCC--Cc-----cccCchhHHHHHHHHHH
Confidence 45777777777778888777777777 444333221 111100 00 01111234555555555
Q ss_pred HHhccC---ChHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCC
Q 004600 585 DYLEKL---PDEIAKSAISSFAAVIKTIMLHQEEEM-KLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDA 660 (743)
Q Consensus 585 ~aLdrl---pdk~v~~AIksF~~~v~~i~~~Q~eE~-kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~ 660 (743)
.++.++ .... ....+.|..-+..++..+-.+. +.++|.+..+=||++....+.....+- +.+.
T Consensus 102 ~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~-----------~~~~- 168 (239)
T smart00721 102 EALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSK-----------EKKK- 168 (239)
T ss_pred HHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc-----------cCCh-
Confidence 554443 2333 4555666666666665555453 355555555555555544444332110 0000
Q ss_pred CCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 661 NTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSI 730 (743)
Q Consensus 661 ~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~ 730 (743)
.+-+.+-..+++..+...+.-...+...+...-+.....+...|-.++.|-..|...+.+.+++|...
T Consensus 169 --~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~ 236 (239)
T smart00721 169 --DEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQ 236 (239)
T ss_pred --hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00222223333333333333333333333333344444466677777888888888888888877653
No 26
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=79.57 E-value=81 Score=32.67 Aligned_cols=194 Identities=11% Similarity=0.169 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccccCccc-CCCCCCCCCCCCcHHHHHHHHHHHhcc
Q 004600 513 HHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLN--LIPIESSLK-ERVTSPPRAPNPPIQALLHSWHDYLEK 589 (743)
Q Consensus 513 ~h~~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~--l~p~e~~~~-~~~~Sp~r~~aPpIf~lC~~W~~aLdr 589 (743)
.+++-.-+||..|..-+.+-..+++.+++...++..-=.-+ |...|.+.+ ...+ .-+-.+...=...+.+
T Consensus 8 ~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l-------~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 8 EKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLL-------AALAEVQKRIKESLER 80 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHH-------HHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999988887765521 122221100 0000 0111222333344455
Q ss_pred CChHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCch
Q 004600 590 LPDEIAKS---AISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPV 666 (743)
Q Consensus 590 lpdk~v~~---AIksF~~~v~~i~~~Q~eE~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v 666 (743)
..+.++.. .|+-++..+.++-.-=..-.+.....+.+.++|.|+...+.+.... +.++.+-+
T Consensus 81 ~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~---------------~~s~~~K~ 145 (216)
T cd07627 81 QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQ---------------GKTQQEKL 145 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------CCChHHHH
Confidence 55555555 6666666555554333333455666778899999998888765311 01122334
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHhh-------hhhhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Q 004600 667 LDRQIVIESLRKRLEEETEAFRRHCLQVRE-------KSLGSLKLRLPDLFRAVSDFAHASFDAYEKLR 728 (743)
Q Consensus 667 ~ekk~~le~lrkrleeE~~~h~k~v~~tr~-------~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~ 728 (743)
...+..|..+.++++.-+.+|......++. --...++..|-..-+++..|...+.+.++..+
T Consensus 146 ~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~ 214 (216)
T cd07627 146 NSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETFY 214 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666666666666555444422 01233444444555555555555555555443
No 27
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=79.14 E-value=84 Score=32.59 Aligned_cols=154 Identities=14% Similarity=0.239 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHHH
Q 004600 517 RTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAK 596 (743)
Q Consensus 517 aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v~ 596 (743)
....|-......+.+...++++|+.|+.+|+.-=.-| ..|..+.
T Consensus 17 ~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~------------------------------------~~d~~i~ 60 (200)
T cd07603 17 RLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYF------------------------------------RDDSLVQ 60 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------------------------CCcHHHH
Confidence 4445555566666777777778888888877422211 1223456
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCC
Q 004600 597 SAISSFAAVIKTIMLHQEEEMK----------------LKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDA 660 (743)
Q Consensus 597 ~AIksF~~~v~~i~~~Q~eE~k----------------qk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~ 660 (743)
.+++.|+..+..||..+..=.. .-+.+-.++|.|+|-...++....||..-.-
T Consensus 61 ~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K----------- 129 (200)
T cd07603 61 NCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPR----------- 129 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----------
Confidence 7777777777777644432111 1134557888888888888887777753210
Q ss_pred CCCCchhhhHHHHHHHHHhhHHHHHHHHHH-HHHHhhhhhhhhhccc-HHHHHHHHHHHHHHHHHHHH
Q 004600 661 NTRDPVLDRQIVIESLRKRLEEETEAFRRH-CLQVREKSLGSLKLRL-PDLFRAVSDFAHASFDAYEK 726 (743)
Q Consensus 661 ~~~~~v~ekk~~le~lrkrleeE~~~h~k~-v~~tr~~tl~sLq~gL-p~VFqAl~~Fs~~~~~aye~ 726 (743)
. |-..++.....|..++..|..+ +..+ ..+|.+|+.= ..+.++|-+|..++..-|..
T Consensus 130 -~------K~~~~~Ea~~~L~~~Rk~f~~~sldyv--~~in~iq~kKk~e~le~ll~~~~A~~tff~q 188 (200)
T cd07603 130 -S------KPQEAEEATNILTATRSCFRHTALDYV--LQINVLQAKKRHEILSTLLSYMHAQFTFFHQ 188 (200)
T ss_pred -C------CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1112233334455555555433 3333 2345555432 36788888888888776654
No 28
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=78.13 E-value=4.1 Score=47.20 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHH
Q 004600 383 AIVLDKMLAWEKKLFEEVKRAELMKLEYQRK 413 (743)
Q Consensus 383 ssTLdKLyAWEKKLY~EVKa~E~lR~eyeKK 413 (743)
+--+.||..|=-||--+--..|..--.+|-|
T Consensus 431 ~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk 461 (817)
T KOG1925|consen 431 GGLAARLQLWAFKLDYDSMEKEIAEPLFDLK 461 (817)
T ss_pred HHHHHHHHHHhhhcccchhhHHhhhHHHHHH
Confidence 3346788888777744433333333333333
No 29
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=78.06 E-value=96 Score=32.66 Aligned_cols=177 Identities=19% Similarity=0.243 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCC----------------CCCCCCCCCcHHHHH
Q 004600 517 RTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERV----------------TSPPRAPNPPIQALL 580 (743)
Q Consensus 517 aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~----------------~Sp~r~~aPpIf~lC 580 (743)
--.+||.++..++....+++++=-.||+ ||.+.. |. ...+.+. +.+.- .--.....|
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~y~~----~l~k~~-~~-g~~k~k~~p~~~Lg~~M~~~g~~lg~dS-~~G~aL~~~ 80 (215)
T cd07593 8 EFLELEKEIELRKEGMERLHRSTEAYVE----YLSKKK-PL-LDDKDKCLPVEALGLVMINHGEEFPQDS-EYGSCLSKL 80 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccC-cc-ccccccCChHHHHHHHHHHHHhhCCCCC-hHHHHHHHH
Confidence 3578999999999999999999999998 444421 11 0000010 11100 001133455
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCC
Q 004600 581 HSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDD 659 (743)
Q Consensus 581 ~~W~~aLdrlpdk~v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~ 659 (743)
.+=...|..+-+.-+.....+|...|+..+. +..+ ++.|+|++..+=+|+-. ..|+...+..
T Consensus 81 G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKkLe~rRLdyD~~-------ksk~~kak~~--------- 143 (215)
T cd07593 81 GRAHCKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKKLESRRLAYDAA-------LTKSQKAKKE--------- 143 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcccc---------
Confidence 5555666666566666667777777776654 3333 45555555544444443 3333211100
Q ss_pred CCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhc-------ccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004600 660 ANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKL-------RLPDLFRAVSDFAHASFDAYEKLRSIT 731 (743)
Q Consensus 660 ~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~-------gLp~VFqAl~~Fs~~~~~aye~l~~~s 731 (743)
+ ..++..++..+.+|..+...+...= -++.. .|-.+.+|-.+|=..|.+.+++|....
T Consensus 144 ----~---------~~~eeElr~Ae~kfees~E~a~~~M-~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~ 208 (215)
T cd07593 144 ----D---------SRLEEELRRAKAKYEESSEDVEARM-VAIKESEADQYRDLTDLLDAELDYHQQSLDVLREVRQSW 208 (215)
T ss_pred ----c---------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0133344445556666665554322 23333 466777788888888888888887644
No 30
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=77.42 E-value=8.8 Score=43.80 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=8.5
Q ss_pred hcchhhHHhhhh
Q 004600 315 SQSAKDVSNMLE 326 (743)
Q Consensus 315 sesg~eVs~mLE 326 (743)
...|.+|+-+|-
T Consensus 483 ~~v~ndvatiLs 494 (518)
T KOG1830|consen 483 EAVENDVATILS 494 (518)
T ss_pred ccccchHHHHHH
Confidence 445788888884
No 31
>PHA03211 serine/threonine kinase US3; Provisional
Probab=77.40 E-value=5.2 Score=45.97 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCch
Q 004600 88 PPPPPPLPNFSPSP 101 (743)
Q Consensus 88 PPPPPP~P~~sp~p 101 (743)
||||||+||++|.+
T Consensus 48 ~~~~~~~~~~~~~~ 61 (461)
T PHA03211 48 PPPPEHDPPSPHGA 61 (461)
T ss_pred CCCCCCCCCCCCCc
Confidence 44444444444443
No 32
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=77.36 E-value=52 Score=32.58 Aligned_cols=97 Identities=24% Similarity=0.390 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHhHHHHhHHHHHHHHHHHhhhhcCCc---hhhhHHHHHHHHhhhhhHHHHHHhhHHH
Q 004600 382 LAIVLDKMLAWEKKLFEE----VKRAELMKLEYQRKVAMLNKLKKRGSA---NEMLEKTKAAVAHLHTKYVVDMQTMDSS 454 (743)
Q Consensus 382 hssTLdKLyAWEKKLY~E----VKa~E~lR~eyeKK~~~Lr~qd~rGad---~~kidKTra~Vk~L~Tri~Vaiqsvdsi 454 (743)
....++.|--+= +.|.+ +|..+..+++||+-...+.+...++.. ..+++.++..-..+...+...+..
T Consensus 116 ~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~---- 190 (229)
T PF03114_consen 116 ESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPK---- 190 (229)
T ss_dssp HHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 333445555554 55555 457888999999999999988865543 567777777777777777665553
Q ss_pred HHhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 004600 455 VSEVNRLRDEELYPKLVALVNGMAKMWENMCI 486 (743)
Q Consensus 455 S~~I~kLRDeEL~PQL~ELi~GL~~MWk~M~e 486 (743)
|...|.+-|-+.|..+|.......+.+++
T Consensus 191 ---l~~~~~~~l~~~l~~~i~~q~~~~~~~~~ 219 (229)
T PF03114_consen 191 ---LFAKRQDILEPCLQSFIEAQLQYFQQLYQ 219 (229)
T ss_dssp ---HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777779999999987777666654
No 33
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=76.92 E-value=1.1e+02 Score=32.54 Aligned_cols=199 Identities=15% Similarity=0.122 Sum_probs=107.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhcc
Q 004600 510 TTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEK 589 (743)
Q Consensus 510 tse~h~~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdr 589 (743)
+-|.-+..-..+..-|..-|.+=..+|.+++.|+.+|..-=..||...+... .-.|.-|-.-...|-+
T Consensus 10 ~l~~d~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~------------~~~l~kf~~~~~El~~ 77 (215)
T cd07642 10 ALDVDRTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDL------------GSAFLKFSVFTKELTA 77 (215)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHH------------HHHHHHHHHHHHHHHH
Confidence 3344455666778888999999999999999999999886666764322111 1234444444444444
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhHHHH-H-HHHHH-HHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCch
Q 004600 590 LPDEIAKSAISSFAAVIKTIMLHQEEEM-K-LKEKC-EETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPV 666 (743)
Q Consensus 590 lpdk~v~~AIksF~~~v~~i~~~Q~eE~-k-qk~k~-e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v 666 (743)
-.+.+..-+..++..|-+-. + --+++ +.+.|.|+|....++....|..+.+.--. . ..+..+....
T Consensus 78 --------l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~--K-~~~~~~~e~~ 146 (215)
T cd07642 78 --------LFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHA--K-MHGMIRTEIS 146 (215)
T ss_pred --------HHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--C-ccccchhccc
Confidence 44444445554544443321 1 11222 24444444444444433322221110000 0 0000000000
Q ss_pred -hhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004600 667 -LDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSIT 731 (743)
Q Consensus 667 -~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s 731 (743)
.|=-..|++-|+-...+.--|.-.|......---.|-..|-..|+|-..|-..-++..++|..+.
T Consensus 147 ~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~ 212 (215)
T cd07642 147 GAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSI 212 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12223566777777777777776666666555555666677777777778777777777776544
No 34
>PHA03247 large tegument protein UL36; Provisional
Probab=76.79 E-value=7.3 Score=52.75 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=4.1
Q ss_pred hhhhccCcc
Q 004600 52 LSDFAHGES 60 (743)
Q Consensus 52 LrdFaegEs 60 (743)
|.+|++.+.
T Consensus 2540 lEe~asdd~ 2548 (3151)
T PHA03247 2540 LEELASDDA 2548 (3151)
T ss_pred hhhhhhccc
Confidence 334555444
No 35
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=76.28 E-value=1.1e+02 Score=32.57 Aligned_cols=55 Identities=9% Similarity=0.269 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHH
Q 004600 670 QIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYE 725 (743)
Q Consensus 670 k~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye 725 (743)
+.+++.+...++.-+..|..++..+.... .--..-+|.+|+.+..|=..=++.+.
T Consensus 174 ~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~-~~y~~~m~~~~~~~Q~lEe~Ri~~lk 228 (258)
T cd07655 174 QDKVEKCKQEVSKTKDKYEKALEDLNKYN-PRYMEDMEQVFDKCQEFEEKRLDFFK 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677788889999999998777 56888899998888765444444333
No 36
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=76.16 E-value=1.1e+02 Score=32.25 Aligned_cols=40 Identities=10% Similarity=0.193 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004600 515 HERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNL 554 (743)
Q Consensus 515 ~~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l 554 (743)
.+....|.........+...+.++||.|+.+|+..=.-|+
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~ 54 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCI 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3566777778888888888999999999999999877665
No 37
>smart00721 BAR BAR domain.
Probab=76.10 E-value=34 Score=34.86 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHhHHHHhHHHHHHHHHHHhhhhcCCch--hhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccccchhhHHHHHHH
Q 004600 397 FEEVKRAELMKLEYQRKVAMLNKLKKRGSAN--EMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALV 474 (743)
Q Consensus 397 Y~EVKa~E~lR~eyeKK~~~Lr~qd~rGad~--~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi 474 (743)
.+.+|-.+..|++||.....|.++..++... .++.+++..++....++.-.-.-+-..--.+...|.+.+.|+|..|+
T Consensus 137 ~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~ 216 (239)
T smart00721 137 KKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALI 216 (239)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence 3445688999999999998887765543321 16777777777666666654444444445556666677888888888
Q ss_pred HHHHHHHHHHH
Q 004600 475 NGMAKMWENMC 485 (743)
Q Consensus 475 ~GL~~MWk~M~ 485 (743)
..-..-.+.++
T Consensus 217 ~aq~~y~~~~~ 227 (239)
T smart00721 217 EAQLNFHRESY 227 (239)
T ss_pred HHHHHHHHHHH
Confidence 87655444443
No 38
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.02 E-value=1.2e+02 Score=31.64 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhHHHHHH---------H-------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004600 590 LPDEIAKSAISSFAAVIKTIMLHQEEEMKL---------K-------EKCEETRKELLRKTHAYEEWHRKYK 645 (743)
Q Consensus 590 lpdk~v~~AIksF~~~v~~i~~~Q~eE~kq---------k-------~k~e~~~KeleKK~~~l~~~~~k~~ 645 (743)
+.|.++.++++.|+..+..||..+..=..| . +.+-.++|.|+|-...++....|+.
T Consensus 54 ~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~ 125 (200)
T cd07637 54 KKDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNA 125 (200)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345568899999999999988665432211 1 3344777778877777776666654
No 39
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.99 E-value=66 Score=32.04 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=45.3
Q ss_pred HHHhHHHHHHHHHHHhhhhcCC-chhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhh
Q 004600 404 ELMKLEYQRKVAMLNKLKKRGS-ANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVN 459 (743)
Q Consensus 404 E~lR~eyeKK~~~Lr~qd~rGa-d~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~ 459 (743)
+.+.-...+|-+.|.++...+. ...+|++++..|..++..+..+..-.+.|+..|.
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777654 7789999999999999999999988888887765
No 40
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=71.64 E-value=7.5 Score=44.52 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=9.5
Q ss_pred hHhhHHHHHHhhhhhh
Q 004600 37 GHSGYSFALKNVGAAL 52 (743)
Q Consensus 37 aH~~Y~~sLr~tgaAL 52 (743)
-..+|++.---||-.+
T Consensus 198 eL~~YVk~hhtTGl~W 213 (480)
T KOG2675|consen 198 ELQAYVKEHHTTGLVW 213 (480)
T ss_pred HHHHHHHHhcccccee
Confidence 3456777666677433
No 41
>PRK09752 adhesin; Provisional
Probab=71.58 E-value=3.6 Score=52.04 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=4.2
Q ss_pred hHHhhhhhcc
Q 004600 320 DVSNMLEANR 329 (743)
Q Consensus 320 eVs~mLEa~k 329 (743)
.|-.-+|++=
T Consensus 1174 ~~QPYleaNW 1183 (1250)
T PRK09752 1174 HVIPTLDLNY 1183 (1250)
T ss_pred eEeEEEEEEE
Confidence 3334444443
No 42
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=70.65 E-value=1.4e+02 Score=31.17 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004600 517 RTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWL 550 (743)
Q Consensus 517 aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL 550 (743)
....|-.-....+.+...++++|+.|+.+|+.-=
T Consensus 17 ~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~ 50 (200)
T cd07639 17 RLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLA 50 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666667777777778888888777653
No 43
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.08 E-value=1.2e+02 Score=32.80 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhcccc
Q 004600 384 IVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRD 463 (743)
Q Consensus 384 sTLdKLyAWEKKLY~EVKa~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRD 463 (743)
.+++.+..| .+++ ++-++.|..|+..|...-++-.-|+....|||++.-++.....|..+++..+.+-. +=
T Consensus 117 ~~~~~~~~~-~~~~---~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~-----~~ 187 (269)
T cd07673 117 GTLEAVQNI-QSIT---QALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKA-----DF 187 (269)
T ss_pred hHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 455555555 3333 45567789999999877666556667788888888888877777776666665422 22
Q ss_pred chhhHHHHHHHHH
Q 004600 464 EELYPKLVALVNG 476 (743)
Q Consensus 464 eEL~PQL~ELi~G 476 (743)
++-+|+..+-+|-
T Consensus 188 ~~~m~~~~~~~Q~ 200 (269)
T cd07673 188 EQKMTETAQKFQD 200 (269)
T ss_pred HHHHHHHHHHHHH
Confidence 5666777666664
No 44
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=69.80 E-value=1.5e+02 Score=31.18 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNL 554 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l 554 (743)
+..-.|-........+...+.++||.|+.+|+..=.-|+
T Consensus 16 ~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~i 54 (207)
T cd07634 16 KFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECI 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455667777888888999999999999999999877665
No 45
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.18 E-value=1.6e+02 Score=31.12 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004600 517 RTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNL 554 (743)
Q Consensus 517 aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l 554 (743)
..-.|......-..+...|..+||.|+.+|+..=.-|+
T Consensus 17 ~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~i 54 (207)
T cd07633 17 FIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFI 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566677777888899999999999999998777665
No 46
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=69.04 E-value=4 Score=51.22 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 004600 380 ETLAIVLDKMLAWEKKLFEEVKRAELMK 407 (743)
Q Consensus 380 ~shssTLdKLyAWEKKLY~EVKa~E~lR 407 (743)
-+|-..|-=+|-.--||-.-+|+--..+
T Consensus 612 lNhvGqLTGiYRYKYklM~QIraCKd~K 639 (2365)
T COG5178 612 LNHVGQLTGIYRYKYKLMKQIRACKDWK 639 (2365)
T ss_pred hhcchhheehhHHHHHHHHHHHHhhhHH
Confidence 4677777777777777777777655443
No 47
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.61 E-value=1.4e+02 Score=29.80 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCC
Q 004600 514 HHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLN--LIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLP 591 (743)
Q Consensus 514 h~~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~--l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlp 591 (743)
.+.-..+||.-|...+..+..+++.+++...++..-=.-+ |--.+.... ..+-..+.....+++.+.
T Consensus 9 ~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~-----------~~l~~~~~~~~~~~~~~~ 77 (218)
T cd07596 9 AKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVG-----------GELGEALSKLGKAAEELS 77 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----------hhhHHHHHHHHHHHHHHH
Confidence 4566788888999999999999888888777655433311 001111100 012222333333322222
Q ss_pred h----------HHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 592 D----------EIAKS---AISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWH 641 (743)
Q Consensus 592 d----------k~v~~---AIksF~~~v~~i~~~Q~eE~kqk~k~e~~~KeleKK~~~l~~~~ 641 (743)
+ ..+.+ -...|+..|+.++..... .....+.+.+.+.+|...+.+..
T Consensus 78 ~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~~~kl~ 137 (218)
T cd07596 78 SLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRAD---ALLTLQSLKKDLASKKAQLEKLK 137 (218)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11222 233455556666655552 33345677888888888777654
No 48
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=67.37 E-value=1.5e+02 Score=30.28 Aligned_cols=184 Identities=16% Similarity=0.267 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCC
Q 004600 514 HHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNL--IPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLP 591 (743)
Q Consensus 514 h~~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l--~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlp 591 (743)
.++-.-.||..|..-+..+..+++.++++..++..--.... -..|.+ .++-..|..-..+++++.
T Consensus 29 ~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~-------------~~l~~~l~~l~~~~~~~~ 95 (236)
T PF09325_consen 29 IKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE-------------KSLSEALSQLAEAFEKIS 95 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-------------chhHHHHHHHHHHHHHHH
Confidence 34557788999999999999999999999988876544211 112211 112233333333333332
Q ss_pred h----------HHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCC
Q 004600 592 D----------EIAKSAISSFA---AVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGD 658 (743)
Q Consensus 592 d----------k~v~~AIksF~---~~v~~i~~~Q~eE~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~ 658 (743)
+ ....+.|+-++ .+|+.++.+.. +...-.+.+.++|.||...+++.....
T Consensus 96 ~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~---~~~~~~~~a~~~l~kkk~~~~kl~~~~-------------- 158 (236)
T PF09325_consen 96 ELLEEQANQEEETLGEPLREYLRYIESVKEALNRRD---KKLIEYQNAEKELQKKKAQLEKLKASG-------------- 158 (236)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccccc--------------
Confidence 2 11222333222 22333322222 222334566777887777666433210
Q ss_pred CCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhh-------hhhhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Q 004600 659 DANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVRE-------KSLGSLKLRLPDLFRAVSDFAHASFDAYEKLR 728 (743)
Q Consensus 659 ~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~-------~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~ 728 (743)
....+-+..-+..++.+.++++.-+.+|......++. -....|+..|-..-+....|...++++++.+.
T Consensus 159 -~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~ 234 (236)
T PF09325_consen 159 -KNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFL 234 (236)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 0112233344455556666665555555555444422 22345666666666666666666666666653
No 49
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.09 E-value=1.8e+02 Score=30.92 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHhccCCh----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 573 NPPIQALLHSWHDYLEKLPD----------EIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHR 642 (743)
Q Consensus 573 aPpIf~lC~~W~~aLdrlpd----------k~v~~AIksF~~~v~~i~~~Q~eE~kqk~k~e~~~KeleKK~~~l~~~~~ 642 (743)
.+....+|++|...++.|.+ +-|++=|+.|.+.+..|-. .++|| +...-||++-...++....
T Consensus 64 ~~~~~~~~e~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~------~I~KR-~~Kl~DYD~~r~~~~kl~~ 136 (225)
T cd07590 64 NDELRNLVEALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRSVFPSVNA------AIKRR-EQSLQEYERLQAKVEKLAE 136 (225)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH-HhHHHHHHHHHHHHHHHHh
Confidence 35567799999988877763 2356677777777766621 12222 3444566666555554332
Q ss_pred hhhhcccchhhhccCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHH
Q 004600 643 KYKKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRH 690 (743)
Q Consensus 643 k~~~~~~~~~~~~~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~ 690 (743)
| . .++ .+..+|...++.++.-+.-|...
T Consensus 137 K----~-------------~k~---~~~~KL~kae~el~~Ak~~ye~~ 164 (225)
T cd07590 137 K----E-------------KTG---PNLAKLEQAEKALAAARADFEKQ 164 (225)
T ss_pred C----c-------------cCC---hhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 001 12345666666666666666644
No 50
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=66.71 E-value=1.7e+02 Score=30.70 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNL 554 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l 554 (743)
+....|-........+...+.++||.|+.+|+..=.-|+
T Consensus 16 ~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~ 54 (207)
T cd07602 16 KAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECI 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456677777788888888999999999999998777665
No 51
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=65.06 E-value=4.7 Score=44.46 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=6.2
Q ss_pred hHhhHHHHHHhhh
Q 004600 37 GHSGYSFALKNVG 49 (743)
Q Consensus 37 aH~~Y~~sLr~tg 49 (743)
....|++---.||
T Consensus 194 ~L~~YVke~httG 206 (312)
T PF01213_consen 194 ELQAYVKEHHTTG 206 (312)
T ss_dssp HHHHHHHHHSTTS
T ss_pred HHHHHHHHhCccC
Confidence 3445555444455
No 52
>PF15195 TMEM210: TMEM210 family
Probab=63.42 E-value=4.5 Score=37.45 Aligned_cols=7 Identities=29% Similarity=0.430 Sum_probs=3.0
Q ss_pred hhccCcc
Q 004600 54 DFAHGES 60 (743)
Q Consensus 54 dFaegEs 60 (743)
.|..+|.
T Consensus 58 ~~GvQEd 64 (116)
T PF15195_consen 58 HFGVQED 64 (116)
T ss_pred ccccccc
Confidence 4444443
No 53
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=62.12 E-value=2.1e+02 Score=30.11 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004600 517 RTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNL 554 (743)
Q Consensus 517 aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l 554 (743)
....|-........+...+.++||.|+.+|+..=.-|+
T Consensus 17 ~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~ 54 (207)
T cd07635 17 FIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFI 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44556667777888888999999999999999877665
No 54
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=60.93 E-value=1.5e+02 Score=28.10 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 518 TEELFTVVQKWHTEFEKFVNHQKQFIQALTS 548 (743)
Q Consensus 518 T~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~ 548 (743)
+..|-.....|+.+....+.++..|..+|..
T Consensus 9 ~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~ 39 (194)
T cd07307 9 LKKLIKDTKKLLDSLKELPAAAEKLSEALQE 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555566666666544
No 55
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=60.14 E-value=76 Score=32.48 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=61.9
Q ss_pred HHHhHHHHHHHHHHHhhhhcC-CchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccccchhhHHHHHHHHHHHHHHH
Q 004600 404 ELMKLEYQRKVAMLNKLKKRG-SANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWE 482 (743)
Q Consensus 404 E~lR~eyeKK~~~Lr~qd~rG-ad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~~MWk 482 (743)
+.+.-.++||-..+.++...| ....+++.....|..+..++..+-+..+.|+..|.+=.+.==.=...+|-..|..+..
T Consensus 138 ~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 138 QNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677878887777764 4568999999999999999999999999998876531111111233455555555666
Q ss_pred HHHHHHHHHHHHH
Q 004600 483 NMCIHHDSQLTIV 495 (743)
Q Consensus 483 ~M~ecHq~Q~~ii 495 (743)
.+.++|+....+-
T Consensus 218 ~~i~~~~~~~~~W 230 (236)
T PF09325_consen 218 SQIEYQKKMLEAW 230 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
No 56
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.06 E-value=2.7e+02 Score=30.34 Aligned_cols=153 Identities=9% Similarity=0.062 Sum_probs=77.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhh-hc
Q 004600 578 ALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESE-AE 655 (743)
Q Consensus 578 ~lC~~W~~aLdrlpdk~v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~-~~ 655 (743)
.+|..-...|-.+=..--.+--++|+.=++.|.+.---+ +++|||++.++=||+-+.+.+..-. |.....+..+. ..
T Consensus 84 e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~-k~s~~~~~~~~~~~ 162 (257)
T cd07620 84 EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAA-GRSPRSGGRSEEVG 162 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhh-ccccCCcccccccc
Confidence 344444333333333333344455555555555444333 5788888887777776654322111 10000000000 00
Q ss_pred cCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004600 656 RGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQ 732 (743)
Q Consensus 656 ~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s~ 732 (743)
+.....+..-+.--+.+++.+..++|+.+..|...+-.-=+.- ...=..|..++++..+|=..+++.++.+....+
T Consensus 163 ~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~~~a~Mynfl~kE-~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~ 238 (257)
T cd07620 163 EHQGIRRANKGEPLKEEEEECWRKLEQCKDQYSADLYHFATKE-DSYANYFIRLLELQAEYHKNSLEFLDKNITELK 238 (257)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011011111111255677777777777777766554331111 122235778899999999999999999877665
No 57
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=58.63 E-value=5e+02 Score=33.28 Aligned_cols=64 Identities=28% Similarity=0.353 Sum_probs=44.3
Q ss_pred hhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhh-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004600 419 KLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVN-RLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSE 497 (743)
Q Consensus 419 ~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~-kLRDeEL~PQL~ELi~GL~~MWk~M~ecHq~Q~~ii~~ 497 (743)
|+..+..+..++-+|.+-+.. ++.++..+|..|+ ++ |.|.|||.. |=+.|.+-|..|...-++
T Consensus 842 k~kg~~~~spgl~~t~s~~~~-------lad~~~~qs~qln~p~--ed~~~~l~~-------qQe~~a~l~~sQ~el~~~ 905 (1283)
T KOG1916|consen 842 KQKGKNSQSPGLSSTSSNVAN-------LADSFNEQSQQLNHPM--EDLLPQLLA-------QQETMAQLMASQKELQRQ 905 (1283)
T ss_pred ccCCCcCCCCCccccccchHH-------HHHHHHHHHhhhcCCh--hhHHHHHHH-------HHHHHHHHHHhHHHHHHH
Confidence 455555666666666655554 4677888899998 76 456677654 556788999999866665
Q ss_pred h
Q 004600 498 L 498 (743)
Q Consensus 498 ~ 498 (743)
+
T Consensus 906 l 906 (1283)
T KOG1916|consen 906 L 906 (1283)
T ss_pred H
Confidence 4
No 58
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=58.18 E-value=2.3e+02 Score=29.33 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 004600 617 MKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVRE 696 (743)
Q Consensus 617 ~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~ 696 (743)
.+..........+|+++.+.+....+.+...- .+...+ ..++.+|++|..+=++-...|...|...+.
T Consensus 84 ~~~~~~~~~i~~~f~~~~~~~~~~k~~h~~~L--------rP~Lgh----P~~~~eL~~L~~~E~~R~~~~~~~I~~~~~ 151 (208)
T PF14644_consen 84 QKLCEAMKAIQEEFEQQQKQWEQQKDQHEQQL--------RPNLGH----PDNRQELESLCEREEKRQKEHQEAIQNFWE 151 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCcCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777778888888777665553221 122211 234556777765544555667777777777
Q ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004600 697 KSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQ 732 (743)
Q Consensus 697 ~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s~ 732 (743)
..+......-...+.+|..|+...+.-|.++.++-.
T Consensus 152 ~l~~~~~~~a~~f~~~l~~~~~~ll~~lD~~vt~dD 187 (208)
T PF14644_consen 152 KLLEEVRKEAQMFVARLAQFTEKLLLLLDEVVTPDD 187 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 777777777777888888888888888887766543
No 59
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=56.04 E-value=2.2e+02 Score=30.47 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhH----HHHhHHHHHHHHHHHhhhhcCCch
Q 004600 381 TLAIVLDKMLAWEKKLFEEVKRA----ELMKLEYQRKVAMLNKLKKRGSAN 427 (743)
Q Consensus 381 shssTLdKLyAWEKKLY~EVKa~----E~lR~eyeKK~~~Lr~qd~rGad~ 427 (743)
.| ..|.||-.||-+|-+-|+.. -++-.+|-+++..|-++..++...
T Consensus 6 ~~-e~l~k~q~~ei~lLE~i~~f~~eRakiEkEYA~~L~~L~kq~~kk~~~ 55 (234)
T cd07686 6 SH-EALLKLQDWELRLLETVKKFMALRVKSDKEYASTLQNLCNQVDKESTS 55 (234)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 45 78999999999999998843 345568889999998887665544
No 60
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.15 E-value=2e+02 Score=35.52 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 004600 616 EMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVR 695 (743)
Q Consensus 616 E~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr 695 (743)
....++|+..+..++++++..|.+..++.. .+.+ .-+.|..|+++-.++|++.++-+.
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~-------------------~l~~---~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERK-------------------SLRE---SAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666665443321 1111 123344566666666666665553
Q ss_pred hhhhhhhhcccHHHHHHHHHHHHH
Q 004600 696 EKSLGSLKLRLPDLFRAVSDFAHA 719 (743)
Q Consensus 696 ~~tl~sLq~gLp~VFqAl~~Fs~~ 719 (743)
.+ +..++..+|.+=.|=.+|..+
T Consensus 618 ~v-l~~l~~~~P~LS~AEr~~~~E 640 (717)
T PF10168_consen 618 RV-LQLLNSQLPVLSEAEREFKKE 640 (717)
T ss_pred HH-HHHHhccCCCCCHHHHHHHHH
Confidence 32 356666677554444444444
No 61
>PRK11546 zraP zinc resistance protein; Provisional
Probab=53.66 E-value=35 Score=33.89 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=40.5
Q ss_pred hHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccccchhhHHH
Q 004600 402 RAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKL 470 (743)
Q Consensus 402 a~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDeEL~PQL 470 (743)
.-++|.-+|..+...||. +|-.-|+.++.|.+.=..+-+.|.+.+++|..||+ .|+=|=
T Consensus 51 ~~q~I~~~f~~~t~~LRq---------qL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~-kL~e~r 109 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQ---------QLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ-SLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 445566777777777776 46666777777777777777777777777877776 444443
No 62
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.16 E-value=2.9e+02 Score=28.89 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 518 TEELFTVVQKWHTEFEKFVNHQKQFIQALT 547 (743)
Q Consensus 518 T~qLE~el~~W~ssF~~~I~~Qk~YV~aLn 547 (743)
...||..+.+.+-.-..+|.+++.|+.|..
T Consensus 11 ~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~ 40 (200)
T cd07638 11 VAELELKLDKLVKLCIGMIDAGKAFCQANK 40 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345666666665555555555555554433
No 63
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.45 E-value=3e+02 Score=28.78 Aligned_cols=36 Identities=14% Similarity=0.359 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 514 HHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSW 549 (743)
Q Consensus 514 h~~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~W 549 (743)
=+..+.+|-.....|+.+...+..+++.|+.+|...
T Consensus 13 l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f 48 (202)
T cd07606 13 LRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEF 48 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888889999999999999999998776
No 64
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.35 E-value=3.2e+02 Score=28.88 Aligned_cols=35 Identities=6% Similarity=0.124 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWL 550 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL 550 (743)
..+.+|-........+...+..+|+.|+.+|...=
T Consensus 16 ~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~ 50 (215)
T cd07601 16 SYMNQLLQACKRVYDAQNELKSATQALSKKLGEYE 50 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888888888887763
No 65
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; InterPro: IPR022133 This domain family is found in bacteria, and is approximately 50 amino acids in length. The family is found in association with PF02502 from PFAM. There are two completely conserved residues (D and F) that may be functionally important. ; PDB: 3ONO_A 3C5Y_N 2PPW_A.
Probab=49.93 E-value=16 Score=30.01 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=22.3
Q ss_pred cccHHHHHHHHHHHHHHhhcchhhHHhhh
Q 004600 297 TVSLMKVLNQIDDHFLKASQSAKDVSNML 325 (743)
Q Consensus 297 ~rdL~ev~keId~~F~kAsesg~eVs~mL 325 (743)
.|||++++++||..|+|.+=+|......+
T Consensus 4 ~k~ll~iLk~iDqdLvK~AisGe~Fqe~F 32 (48)
T PF12408_consen 4 YKDLLDILKAIDQDLVKTAISGERFQECF 32 (48)
T ss_dssp S--HHHHHHHS-HHHHHHHT-SHHHHHHH
T ss_pred hhhHHHHHHHhCHHHHHHHhccHHHHHHH
Confidence 47999999999999999999998877655
No 66
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=48.42 E-value=3.2e+02 Score=28.01 Aligned_cols=45 Identities=18% Similarity=0.370 Sum_probs=32.8
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Q 004600 676 LRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLR 728 (743)
Q Consensus 676 lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~ 728 (743)
..+.+++.+..|... .+.|+.-||.+|+.-..|-..|+.+|-.+-
T Consensus 131 ~e~~l~~a~~~y~~l--------N~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q 175 (195)
T cd07589 131 VDEELEEAANQYEAL--------NAQLKEELPKFNQLTAQLLETCLKSFVELQ 175 (195)
T ss_pred hHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555422 468999999999999999999999886654
No 67
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=46.98 E-value=56 Score=40.10 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=6.6
Q ss_pred CchhhhccCCCcc
Q 004600 99 PSPIKRAASLPVI 111 (743)
Q Consensus 99 p~pl~r~~s~p~~ 111 (743)
..+.++.++.|..
T Consensus 995 ~~~s~~~~~~p~s 1007 (1106)
T KOG0162|consen 995 TTTSQQPSARPSS 1007 (1106)
T ss_pred cccccccccCCCC
Confidence 3335566555543
No 68
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=45.31 E-value=18 Score=42.31 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=9.1
Q ss_pred hhhhhhhhccCcccCC
Q 004600 48 VGAALSDFAHGESVDN 63 (743)
Q Consensus 48 tgaALrdFaegEs~~p 63 (743)
...+.-+|+.+....+
T Consensus 184 L~~~~~~~~~~~~~~~ 199 (817)
T KOG1925|consen 184 LAGAMPNEAGGDADSP 199 (817)
T ss_pred ccccCcccccCCCCCc
Confidence 3445667766655444
No 69
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=44.73 E-value=3.4e+02 Score=30.26 Aligned_cols=84 Identities=19% Similarity=0.147 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCchhhhHH
Q 004600 595 AKSAISSFAAVIKTIMLHQ---EEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQI 671 (743)
Q Consensus 595 v~~AIksF~~~v~~i~~~Q---~eE~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~ekk~ 671 (743)
......+.++.+..|+.=- -+|.| --|.++.+||||.+.|+..+.|-. +. .
T Consensus 76 ~~~~~gshssTLdkLyaWEKKLY~EVK---a~E~~r~~yeKK~~~Lr~~d~kg~------------------~~-----~ 129 (312)
T PF04782_consen 76 ECMGSGSHSSTLDKLYAWEKKLYDEVK---AEEKLRIEYEKKCKQLRKQDAKGA------------------DS-----S 129 (312)
T ss_pred cCcccchHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHhCCc------------------cH-----H
Confidence 3444566677776666322 23433 345788999999999988664321 01 1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhc
Q 004600 672 VIESLRKRLEEETEAFRRHCLQVREKSLGSLKL 704 (743)
Q Consensus 672 ~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~ 704 (743)
++|..|.-++.--.++.-+++.+-.++..-.+.
T Consensus 130 kidkTra~v~~L~tri~Vaiq~v~siS~~I~kL 162 (312)
T PF04782_consen 130 KIDKTRASVKDLHTRIRVAIQSVDSISKRIEKL 162 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556556655566666666665555443333
No 70
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.46 E-value=6.4e+02 Score=29.75 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHHH
Q 004600 517 RTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAK 596 (743)
Q Consensus 517 aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v~ 596 (743)
.+..|-.++.+|..+.+.++.+|+.+-.+|..= +.|+. ++|...--|+.+|+.--.-++..=.+-|+
T Consensus 45 e~~kLqkd~k~y~~av~am~~a~~~l~e~l~ei----y~p~~---------~g~~~l~~v~~~~d~l~~d~~~~l~d~vl 111 (460)
T KOG3771|consen 45 EGKRLQKDLKNYLDAVRAMLAASKKLAESLQEI----YEPDW---------PGRDYLQAVADNDDLLWKDLDQKLVDQVL 111 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc---------ccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467788889999999999999998887775432 22321 11111224777777655555544455677
Q ss_pred HHHHHHHHHHHHH
Q 004600 597 SAISSFAAVIKTI 609 (743)
Q Consensus 597 ~AIksF~~~v~~i 609 (743)
.-|..|+..+-.|
T Consensus 112 ~pl~~~~~~fpdi 124 (460)
T KOG3771|consen 112 LPLDTYLGQFPDI 124 (460)
T ss_pred hhHHHhhhhchhH
Confidence 8888888877665
No 71
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=40.69 E-value=1.3e+02 Score=31.77 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=49.9
Q ss_pred HHhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccccc
Q 004600 400 VKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDE 464 (743)
Q Consensus 400 VKa~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDe 464 (743)
||..+..|++|+--|-.|+.++....+...+|.+-.-|+.-.-.++.-.+.-..--.+-.|||.+
T Consensus 105 ikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~D 169 (215)
T cd07659 105 IKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQD 169 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999998777777777777777766666666666666666666777764
No 72
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=38.62 E-value=5.2e+02 Score=27.59 Aligned_cols=127 Identities=11% Similarity=0.131 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhc
Q 004600 577 QALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAE 655 (743)
Q Consensus 577 f~lC~~W~~aLdrlpdk~v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~ 655 (743)
...|.+=...|..+-..-...+=.+|..-++.+...+-.+ +++|||++..+=+|+-+.+ +. .+..
T Consensus 90 L~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~-------r~--~k~~----- 155 (223)
T cd07613 90 LGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKK-------RQ--GKIP----- 155 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------hC--CCCc-----
Confidence 3555555556666666667778888999998887777655 5677777766666664322 21 1100
Q ss_pred cCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004600 656 RGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQ 732 (743)
Q Consensus 656 ~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s~ 732 (743)
+.+|+.-+.+.++-++-....+...-+.-...++ .|-.+.+|-.+|=..|.+.+++|...-.
T Consensus 156 --------------eeElr~A~~kFees~E~a~~~M~n~l~~e~e~~~-~L~~fveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07613 156 --------------DEELRQALEKFDESKEIAESSMFNLLEMDIEQVS-QLSALVQAQLEYHKQATQILQQVTVKLE 217 (223)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333334444333333333333333223333 6888889999999999999999876543
No 73
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.11 E-value=4.6e+02 Score=28.38 Aligned_cols=134 Identities=17% Similarity=0.284 Sum_probs=89.3
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHHhhhhc-CCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccccchhhHHHHHH
Q 004600 395 KLFEEVKRAELMKLEYQRKVAMLNKLKKR-GSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVAL 473 (743)
Q Consensus 395 KLY~EVKa~E~lR~eyeKK~~~Lr~qd~r-Gad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDeEL~PQL~EL 473 (743)
.|.+++...=..-..-.++.+..++.-.+ |-......+.|..++.|...+ -.|+.|-.+-.+|+.|=.+.=||.=++|
T Consensus 71 el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L-~~i~~v~~~~~~l~~ll~~~dy~~Al~l 149 (291)
T PF10475_consen 71 ELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKL-EQIKTVQQTQSRLQELLEEGDYPGALDL 149 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34444444444444555666666655444 777777778888888887765 4778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 004600 474 VNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEK--FVNHQKQF 542 (743)
Q Consensus 474 i~GL~~MWk~M~ecHq~Q~~ii~~~k~L~~~~s~~~tse~h~~aT~qLE~el~~W~ssF~~--~I~~Qk~Y 542 (743)
|...-.++..+ .+++.++.+.. .-.+.-.....+|+.+|..-+..|.. |-+-|-.|
T Consensus 150 i~~~~~~l~~l-----~~~~c~~~L~~--------~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY 207 (291)
T PF10475_consen 150 IEECQQLLEEL-----KGYSCVRHLSS--------QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAY 207 (291)
T ss_pred HHHHHHHHHhc-----ccchHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99988776542 34445554431 11233345567888888888887753 44444444
No 74
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=38.04 E-value=5.1e+02 Score=27.36 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=40.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHH
Q 004600 675 SLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYE 725 (743)
Q Consensus 675 ~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye 725 (743)
.+.+++++-..-|...+..++.-=-.-+-+.+|.||..|-++-..|-.+..
T Consensus 169 ~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~l~ 219 (234)
T cd07652 169 ELLRKVQAADQDYASKVNAAQALRQELLSRHRPEAVKDLFDLILEIDAALR 219 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 566688888899999998885544444557899999999999988877743
No 75
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=36.25 E-value=4.7e+02 Score=26.46 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhcccc
Q 004600 575 PIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKEL----LRKTHAYEEWHRKYKKTHSE 650 (743)
Q Consensus 575 pIf~lC~~W~~aLdrlpdk~v~~AIksF~~~v~~i~~~Q~eE~kqk~k~e~~~Kel----eKK~~~l~~~~~k~~~~~~~ 650 (743)
.||.|+..=...+++|-. ++.+--.....+|...=.....|.+.|.|.-..+|+| |..++..-+..+.+.-.-+.
T Consensus 17 qIf~I~E~~R~E~~~l~~-EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~ 95 (159)
T PF05384_consen 17 QIFEIAEQARQEYERLRK-ELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAM 95 (159)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 488998888887777533 2233333333444444445566777888888888888 44444433322222111110
Q ss_pred hhhhccCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHH
Q 004600 651 ESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDF 716 (743)
Q Consensus 651 ~~~~~~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~F 716 (743)
-- ..-.-|-.||..|+---+++++-.++=...+.++ .++|+-|.++|..|=+.+++.
T Consensus 96 ~r--------e~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi-~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 96 LR--------EREKQLRERRDELERRLRNLEETIERAENLVSQI-GVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHH
Confidence 00 0012345666666666666666666666677666 467899999999998888764
No 76
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=35.78 E-value=6.9e+02 Score=30.07 Aligned_cols=131 Identities=15% Similarity=0.225 Sum_probs=86.3
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccccchhhHHHHHH
Q 004600 394 KKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVAL 473 (743)
Q Consensus 394 KKLY~EVKa~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDeEL~PQL~EL 473 (743)
++.|+++-..+.+ .+|++++..|+..+. .++..|-+.+..++.|...|.-..+.|.+....++..++ .+..|+-+|
T Consensus 181 ~~~~~~Lp~~~~~-~~yk~~v~~i~~~~i--k~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~-~~~~~~~~l 256 (555)
T TIGR03545 181 KKRKKDLPNKQDL-EEYKKRLEAIKKKDI--KNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKK-QLKADLAEL 256 (555)
T ss_pred HHHHHhcCCchhH-HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHH
Confidence 3456677655554 479999999888422 456678899999999999999999999999888877653 222333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 474 VNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQAL 546 (743)
Q Consensus 474 i~GL~~MWk~M~ecHq~Q~~ii~~~k~L~~~~s~~~tse~h~~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aL 546 (743)
-+. =+.=+.-+.+...++ .++.+--+..=+-.++..|...|-.|..-=.-||...
T Consensus 257 k~a-----------p~~D~~~L~~~~~~~-------~~~~~~~~~~L~g~~i~~~~~~~~~~y~~~~p~i~~~ 311 (555)
T TIGR03545 257 KKA-----------PQNDLKRLENKYAIK-------SGDLKNFAVDLFGPEIRKYLQKFLKYYDQAEPLLNKS 311 (555)
T ss_pred Hhc-----------cHhHHHHHHHHhCCC-------cccHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccc
Confidence 221 111112222222332 3344556667778999999999999987767777654
No 77
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=35.31 E-value=3.8e+02 Score=29.45 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=57.9
Q ss_pred HHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 415 AMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTI 494 (743)
Q Consensus 415 ~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~~MWk~M~ecHq~Q~~i 494 (743)
.++.+++.++-+..+|-..+..+..++....|+--.+..+..+ .|=.+|.-+|..|.||=++|..|
T Consensus 152 d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~--------------~lKEa~~~~f~Al~E~aEK~~Il 217 (271)
T PF13805_consen 152 DEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ--------------KLKEAYSLKFDALIERAEKQAIL 217 (271)
T ss_dssp HHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788899999999999999988888777666655 56689999999999999999998
Q ss_pred HHhhCC
Q 004600 495 VSELKP 500 (743)
Q Consensus 495 i~~~k~ 500 (743)
..-.|.
T Consensus 218 a~~gk~ 223 (271)
T PF13805_consen 218 AEYGKR 223 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887553
No 78
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=35.22 E-value=5.8e+02 Score=27.18 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhh
Q 004600 576 IQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEA 654 (743)
Q Consensus 576 If~lC~~W~~aLdrlpdk~v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~ 654 (743)
....|.+=...|..+-..-...+-.+|..-++.++..+-.+ ++.|||++..+=+|+-+.+ ++ .+.++
T Consensus 89 aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~-------r~--~k~~e--- 156 (223)
T cd07614 89 ALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKK-------RQ--GKIPD--- 156 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cC--CCCch---
Confidence 34556655566666666667778889999999998777766 5677777766666664332 21 00000
Q ss_pred ccCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhc-------ccHHHHHHHHHHHHHHHHHHHHH
Q 004600 655 ERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKL-------RLPDLFRAVSDFAHASFDAYEKL 727 (743)
Q Consensus 655 ~~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~-------gLp~VFqAl~~Fs~~~~~aye~l 727 (743)
.+- ..++++|..+...+...= -++.. .|-.+.+|-.+|=..|++..++|
T Consensus 157 ------------eel-----------r~a~ekFees~E~a~~~M-~~il~~e~e~~~~L~~lveAQl~Yh~qa~eiL~~l 212 (223)
T cd07614 157 ------------EEL-----------RQAMEKFEESKEVAETSM-HNLLETDIEQVSQLSALVDAQLDYHRQAVQILDEL 212 (223)
T ss_pred ------------HHH-----------HHHHHHHHHHHHHHHHHH-HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 223335555554443222 22222 46677788888888888888887
Q ss_pred HHHh
Q 004600 728 RSIT 731 (743)
Q Consensus 728 ~~~s 731 (743)
...-
T Consensus 213 ~~~l 216 (223)
T cd07614 213 AEKL 216 (223)
T ss_pred HHHH
Confidence 6543
No 79
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.14 E-value=6.2e+02 Score=27.20 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHhccCCh---HHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 004600 574 PPIQALLHSWHDYLEKLPD---EIAKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAY 637 (743)
Q Consensus 574 PpIf~lC~~W~~aLdrlpd---k~v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l 637 (743)
.++-.....|..+..+|-+ .--....++|..-++.++..+-.+ ++.|+|++..+=+|+-....+
T Consensus 103 s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~ 170 (242)
T cd07600 103 DPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAEL 170 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566778888887776 445556788999999888877655 567777776666666554433
No 80
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=33.63 E-value=73 Score=27.91 Aligned_cols=55 Identities=15% Similarity=0.333 Sum_probs=43.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhHH--HHHhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 004600 430 LEKTKAAVAHLHTKYVVDMQTMDS--SVSEVNRLRDEELYPKLVALVNGMAKMWENMCI 486 (743)
Q Consensus 430 idKTra~Vk~L~Tri~Vaiqsvds--iS~~I~kLRDeEL~PQL~ELi~GL~~MWk~M~e 486 (743)
.+..-..++.|.. +.++.+.+.+ |-..+++||.-. -|++-.|...|.+=||.+.+
T Consensus 18 ~~~~l~~L~~L~~-~~~t~~~L~~T~iG~~v~~Lrkh~-~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 18 VSRCLDILKKLKK-LPITVDLLEETRIGKKVNGLRKHK-NEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHCcHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHhc
Confidence 4556667777775 7777777766 558999999875 69999999999999998753
No 81
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=33.55 E-value=31 Score=35.53 Aligned_cols=8 Identities=38% Similarity=0.430 Sum_probs=4.1
Q ss_pred HHHHHHHH
Q 004600 21 RNLMKDAV 28 (743)
Q Consensus 21 kr~~k~av 28 (743)
|++||-+.
T Consensus 102 k~lMk~~E 109 (225)
T KOG3397|consen 102 KFLMKSTE 109 (225)
T ss_pred HHHHHHHH
Confidence 45565443
No 82
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=33.43 E-value=5.9e+02 Score=26.76 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHH-HHHHhccCChHHH
Q 004600 517 RTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHS-WHDYLEKLPDEIA 595 (743)
Q Consensus 517 aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~-W~~aLdrlpdk~v 595 (743)
.|..|-.++..+..+.....++|+.+-++|+. .+.|.-. ++..--.|+..+.. |.+--+.| .+.|
T Consensus 27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~----lY~p~~~---------~~~~~~~v~e~~d~~~~~l~~~l-~~~V 92 (211)
T cd07588 27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKE----LYEPDWP---------GREHLASIFEQLDLLWNDLEEKL-SDQV 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCccc---------cHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45667777777777777888888888888752 1123211 01000113333333 44433444 6778
Q ss_pred HHHHHHHHHHHHHHH
Q 004600 596 KSAISSFAAVIKTIM 610 (743)
Q Consensus 596 ~~AIksF~~~v~~i~ 610 (743)
+.-|+.|.+.+..|-
T Consensus 93 l~Pl~~~~s~f~~i~ 107 (211)
T cd07588 93 LGPLTAYQSQFPEVK 107 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888999988888773
No 83
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=33.20 E-value=6.3e+02 Score=26.97 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhccc--------cccCcccC------CCCCCCCCCCCcH
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQA-----LTSWLKLNLI--------PIESSLKE------RVTSPPRAPNPPI 576 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~a-----Ln~WL~l~l~--------p~e~~~~~------~~~Sp~r~~aPpI 576 (743)
.--.+||.++..=+....+.++.=-.||+- .--|+...+. |.+ -++. .-+.|.-. --..
T Consensus 17 ~df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e-~Lg~~M~~~g~~lg~~S~-~g~a 94 (229)
T cd07594 17 AHFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLE-QLGQAMIEAGNDFGPGTA-YGSA 94 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHH-HHHHHHHHHHhhCCCCCc-hHHH
Confidence 346789999999888888888888888861 1123322110 000 0000 00111100 0123
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHH
Q 004600 577 QALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTH 635 (743)
Q Consensus 577 f~lC~~W~~aLdrlpdk~v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~ 635 (743)
...|.+=...|..+-..-...+-.+|..-++.++..+..+ ++.|+|++..+=+|+-...
T Consensus 95 L~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~ 154 (229)
T cd07594 95 LIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKT 154 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666566666677888999999888877755 4566666665555554443
No 84
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=32.49 E-value=6.4e+02 Score=26.88 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 004600 576 IQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAY 637 (743)
Q Consensus 576 If~lC~~W~~aLdrlpdk~v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l 637 (743)
....|.+=...|..+-+.-+..+-.+|..-++.++..+..+ ++.|+|++.-+=||+-+.+.+
T Consensus 94 aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~ 156 (220)
T cd07617 94 TLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARL 156 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666777889999999999988755 678888888777777766544
No 85
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=32.43 E-value=4.5e+02 Score=28.89 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004600 472 ALVNGMAKMWENMCIHHDS 490 (743)
Q Consensus 472 ELi~GL~~MWk~M~ecHq~ 490 (743)
+||+---.||+-|-+|+..
T Consensus 20 ~l~~eCEe~wk~me~~q~k 38 (268)
T PF11802_consen 20 ELIKECEELWKDMEECQNK 38 (268)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666799999988654
No 86
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=31.98 E-value=6.5e+02 Score=26.81 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhH
Q 004600 591 PDEIAKSAISSFAAVIKTIMLHQE 614 (743)
Q Consensus 591 pdk~v~~AIksF~~~v~~i~~~Q~ 614 (743)
+|+++.++++.|+..|..|...+.
T Consensus 59 ~D~~v~~sL~kFs~~L~el~~~h~ 82 (215)
T cd07632 59 GDEEVISTLQYFAKVVDELNVLHS 82 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888877665554
No 87
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=31.69 E-value=58 Score=34.27 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHHHHhccCChHH---HHHHHHHHHHHHHHHHH
Q 004600 573 NPPIQALLHSWHDYLEKLPDEI---AKSAISSFAAVIKTIML 611 (743)
Q Consensus 573 aPpIf~lC~~W~~aLdrlpdk~---v~~AIksF~~~v~~i~~ 611 (743)
-|.|+.+|+.|.+-|++..-.. ..=+-+.|+.+|.+++.
T Consensus 146 vPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi~ 187 (230)
T KOG4503|consen 146 VPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIR 187 (230)
T ss_pred CccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999931111 11233455555555543
No 88
>COG5085 Predicted membrane protein [Function unknown]
Probab=31.69 E-value=58 Score=34.27 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHHHHhccCChHH---HHHHHHHHHHHHHHHHH
Q 004600 573 NPPIQALLHSWHDYLEKLPDEI---AKSAISSFAAVIKTIML 611 (743)
Q Consensus 573 aPpIf~lC~~W~~aLdrlpdk~---v~~AIksF~~~v~~i~~ 611 (743)
-|.|+.+|+.|.+-|++..-.. ..=+-+.|+.+|.+++.
T Consensus 146 vPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi~ 187 (230)
T COG5085 146 VPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIR 187 (230)
T ss_pred CccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999931111 11233455555555543
No 89
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=31.56 E-value=1.6e+02 Score=33.68 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=9.5
Q ss_pred ccchHHHHHHhHHHHHHHH
Q 004600 7 KIDNEEAVARSKDRRNLMK 25 (743)
Q Consensus 7 kve~e~~v~rckeRkr~~k 25 (743)
|.+-|-+++-|.+-|....
T Consensus 308 Kle~e~~l~a~qeakek~~ 326 (442)
T PF06637_consen 308 KLEAEQGLQASQEAKEKAG 326 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444443
No 90
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=31.15 E-value=6.7e+02 Score=26.71 Aligned_cols=162 Identities=14% Similarity=0.225 Sum_probs=101.7
Q ss_pred HHHHHhhhccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--Ccccccc--cCchhhHHHH---HHHHH
Q 004600 452 DSSVSEVNRLRDEE-LYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPL--DIAHAVK--ETTQHHHERT---EELFT 523 (743)
Q Consensus 452 dsiS~~I~kLRDeE-L~PQL~ELi~GL~~MWk~M~ecHq~Q~~ii~~~k~L--~~~~s~~--~tse~h~~aT---~qLE~ 523 (743)
|+..++|+.||+.+ .|-+|+++...|++=...|.+||+.=-.+..++--- ....+.. ..++.||... ..|-.
T Consensus 2 d~l~~qie~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~ll~ 81 (215)
T cd07659 2 DGLVKKLEELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIELLK 81 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHHHHH
Confidence 45678899999865 689999999999999999999999888877776321 1111111 2367787553 56667
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHH
Q 004600 524 VVQKWHTEFEKFVN--------HQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIA 595 (743)
Q Consensus 524 el~~W~ssF~~~I~--------~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v 595 (743)
.+.-..+++.-+++ ..|.|..+=..+|.-|+.=.|-++.+.... ++|. |.-.|
T Consensus 82 ai~~~~s~l~T~l~KaipDT~lTikkY~~ar~EY~ayc~kvkEmd~ee~~~~------------------~~~e-~l~rv 142 (215)
T cd07659 82 TLKPMLSDLGTYLNKAIPDTKLTIKKYADVKFEYLSYCLKVKEMDDEEYSYA------------------ALDE-PLYRV 142 (215)
T ss_pred HhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc------------------cccC-cHHHH
Confidence 77777777777765 577888887777777764333222211111 1111 11112
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 596 KSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEE 639 (743)
Q Consensus 596 ~~AIksF~~~v~~i~~~Q~eE~kqk~k~e~~~KeleKK~~~l~~ 639 (743)
..+=-.|--+++ +. +..|.|-+.++.|.--|++-|+.
T Consensus 143 etgnyeyrl~lR-----cr--q~~r~kf~kLR~DV~vKlelLe~ 179 (215)
T cd07659 143 ETGNYEYRLILR-----CR--QEARARFAKLRQDVLEKLELLDQ 179 (215)
T ss_pred HhcchHHHHHHH-----HH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 222223333322 22 45678888899998888877764
No 91
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=31.08 E-value=94 Score=27.06 Aligned_cols=52 Identities=10% Similarity=0.272 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhhHHHHHHhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 004600 432 KTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHH 488 (743)
Q Consensus 432 KTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~~MWk~M~ecH 488 (743)
.||..+|.+.-++-..++.++....-+..+-...-||+ .-|..+||.|+.+|
T Consensus 7 Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~-----~~l~~~wk~ll~~q 58 (79)
T smart00872 7 TSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPS-----EQLEELWKALLLNQ 58 (79)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-----HHHHHHHHHHHHhc
Confidence 46777887777777777777777665433322223554 34778999998764
No 92
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=30.44 E-value=2e+02 Score=28.29 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=53.2
Q ss_pred HhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHhhCCCCcccccccCchhhHHHHHHHH
Q 004600 449 QTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHD-SQLT-----IVSELKPLDIAHAVKETTQHHHERTEELF 522 (743)
Q Consensus 449 qsvdsiS~~I~kLRDeEL~PQL~ELi~GL~~MWk~M~ecHq-~Q~~-----ii~~~k~L~~~~s~~~tse~h~~aT~qLE 522 (743)
.+|-+|-++|+. +|...+=+=+.|++-+ |--|-. .+.+ .+.++..+-.. . .|...-..+-
T Consensus 37 ~a~ral~KRl~~-~n~~v~l~AL~LLe~~------vkNCG~~fh~evask~Fl~eL~kl~~~----~---~~~~Vk~kil 102 (144)
T cd03568 37 DCLKAIMKRLNH-KDPNVQLRALTLLDAC------AENCGKRFHQEVASRDFTQELKKLIND----R---VHPTVKEKLR 102 (144)
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHH------HHHCCHHHHHHHhhHHHHHHHHHHhcc----c---CCHHHHHHHH
Confidence 444445555544 5555555556666665 344442 3333 33344333211 1 4556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004600 523 TVVQKWHTEFEKFVNHQKQFIQALTSWLKL 552 (743)
Q Consensus 523 ~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l 552 (743)
.-++.|..+|++ ..+-.||..++..|+.
T Consensus 103 ~li~~W~~~f~~--~~~l~~i~~~y~~L~~ 130 (144)
T cd03568 103 EVVKQWADEFKN--DPSLSLMSDLYKKLKN 130 (144)
T ss_pred HHHHHHHHHhCC--CcccHHHHHHHHHHHH
Confidence 778999999996 4678899999999996
No 93
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=30.09 E-value=6.3e+02 Score=26.91 Aligned_cols=93 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccccchhhHHHHHHHHHHHH
Q 004600 400 VKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAK 479 (743)
Q Consensus 400 VKa~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~~ 479 (743)
...-......+.||-..+-++...|- ..||.-++..|+.++.+...+-+--+.||..|.+==+-==.=...++-.+|..
T Consensus 132 ~~~~~~a~~~L~kkr~~~~Kl~~~~k-~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~ 210 (234)
T cd07664 132 WQKWQDAQVTLQKKREAEAKLQYANK-PDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIK 210 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004600 480 MWENMCIHHDSQLTIVS 496 (743)
Q Consensus 480 MWk~M~ecHq~Q~~ii~ 496 (743)
-+.+|.+ .|.++|.
T Consensus 211 fles~ie---~qke~ie 224 (234)
T cd07664 211 YLESLVQ---TQQQLIK 224 (234)
T ss_pred HHHHHHH---HHHHHHH
No 94
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=29.50 E-value=7.5e+02 Score=26.72 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHH
Q 004600 670 QIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVS 714 (743)
Q Consensus 670 k~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~ 714 (743)
+..||.++.++.--...|..++......+. ....-++.+|+.+.
T Consensus 156 ~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~-~~~~~m~~~~~~~Q 199 (269)
T cd07673 156 QREIEKAAVKSKKATESYKLYVEKYALAKA-DFEQKMTETAQKFQ 199 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 446777888888778889999888876654 66667777666544
No 95
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.38 E-value=95 Score=27.12 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=39.3
Q ss_pred HhhhhhHHHHHHhhHHHHHhhhccccchhhHHHHHHHHHH------HHHHHHHHH
Q 004600 438 AHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGM------AKMWENMCI 486 (743)
Q Consensus 438 k~L~Tri~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL------~~MWk~M~e 486 (743)
+.|+=.|....|-||+==++.+++--..+.|.+-+--..- .++|+.|+|
T Consensus 2 E~ldQ~iTl~LQeID~N~s~~~~iit~~IlP~v~rY~~~s~~i~~~~~fwk~fFe 56 (66)
T PF08655_consen 2 EQLDQEITLLLQEIDSNFSRCHRIITDKILPAVERYGESSEKIWDSAKFWKQFFE 56 (66)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4677789999999999888888888889999987654443 378888876
No 96
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.15 E-value=6.5e+02 Score=27.17 Aligned_cols=83 Identities=25% Similarity=0.304 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCchhhhHHHHHH
Q 004600 596 KSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVIES 675 (743)
Q Consensus 596 ~~AIksF~~~v~~i~~~Q~eE~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~ekk~~le~ 675 (743)
...+..|+ +.|-..|.|+.+.+.-+.++.-++.+...-+.+.+.. +.++. +.+...+.++|.
T Consensus 43 ~nS~~efa---r~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~--q~~ie-------------qeik~~q~elEv 104 (246)
T KOG4657|consen 43 MNSLVEFA---RALSQSQVELENLKADLRETENELVKVNELKTEKEAR--QMGIE-------------QEIKATQSELEV 104 (246)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-------------HHHHHHHHHHHH
Confidence 44445554 4777788888888888888888877776633332211 11111 223445667777
Q ss_pred HHHh---hHHHHHHHHHHHHHHhh
Q 004600 676 LRKR---LEEETEAFRRHCLQVRE 696 (743)
Q Consensus 676 lrkr---leeE~~~h~k~v~~tr~ 696 (743)
+++. +++|+..+...|.+.|.
T Consensus 105 l~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 105 LRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7664 56777777777777764
No 97
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=28.92 E-value=1.5e+02 Score=33.58 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004600 524 VVQKWHTEFEKFVNHQKQFIQ 544 (743)
Q Consensus 524 el~~W~ssF~~~I~~Qk~YV~ 544 (743)
|...-|.+|-.+=+-+-+|+.
T Consensus 452 e~srrh~~~~~~~drhddY~~ 472 (498)
T KOG4849|consen 452 EISRRHFNFHFFNDRHDDYII 472 (498)
T ss_pred HHHHHHhhhhhhhhhHHHHHH
Confidence 344444444444444444544
No 98
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=28.60 E-value=1.7e+02 Score=27.60 Aligned_cols=31 Identities=19% Similarity=0.106 Sum_probs=22.3
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 699 LGSLKLRLPDLFRAVSDFAHASFDAYEKLRS 729 (743)
Q Consensus 699 l~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~ 729 (743)
+.++=.+-.+||+++.-+|...++.-+.-+.
T Consensus 47 Va~Vl~NW~nV~r~Is~AS~~l~~~~~~~~~ 77 (103)
T PF08654_consen 47 VASVLANWQNVFRAISMASLSLAKYSEGDYE 77 (103)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhhhccccccc
Confidence 5566677889999999988777665444433
No 99
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.50 E-value=3.2e+02 Score=29.31 Aligned_cols=95 Identities=17% Similarity=0.280 Sum_probs=57.6
Q ss_pred HHhccCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCC
Q 004600 585 DYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRD 664 (743)
Q Consensus 585 ~aLdrlpdk~v~~AIksF~~~v~~i~~~Q~eE~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~ 664 (743)
+-||++= +-|.++|..|=..-..+.. ..-..||.|.|. ||-|.++.|++....+- .... . +
T Consensus 8 ~Eid~~l-Kkv~EG~~~F~~i~~K~~~--~~n~~QKEK~E~---DLKkEIKKLQR~RdQIK-~W~~--------~----~ 68 (233)
T PF04065_consen 8 QEIDRTL-KKVQEGVEEFDEIYEKVES--ATNQNQKEKLEA---DLKKEIKKLQRLRDQIK-TWLS--------S----N 68 (233)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHc--ccCcchHHHHHH---HHHHHHHHHHHHHHHHH-HHcc--------C----c
Confidence 3444432 4567888888665555443 234667776664 77777777776554432 1110 0 1
Q ss_pred chhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 004600 665 PVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSL 699 (743)
Q Consensus 665 ~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl 699 (743)
.+-+|. .|...|+.+|..|++|...=+.+...+.
T Consensus 69 diKdk~-~L~e~Rk~IE~~MErFK~vEkesKtKaf 102 (233)
T PF04065_consen 69 DIKDKK-KLLENRKLIEEQMERFKVVEKESKTKAF 102 (233)
T ss_pred ccccHH-HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 222343 4777999999999999877777765553
No 100
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=28.18 E-value=2.3e+02 Score=31.77 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH----hHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHH
Q 004600 380 ETLAIVLDKMLAWEKKLFEEVK----RAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSV 455 (743)
Q Consensus 380 ~shssTLdKLyAWEKKLY~EVK----a~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS 455 (743)
.-|+||.-++++-+-+|-+=-| |--+-|.-|++|...-+.++.-- ..|+-..+.|..----|..+++.++.||
T Consensus 148 ~~Has~a~~~l~l~~~~R~~ek~n~~AIkKSrpYfE~k~~~t~~le~qk---~tv~~Leaev~~~K~~Y~~slrnLE~IS 224 (426)
T KOG2008|consen 148 LVHASTAARYLALMGRMRQLEKKNKRAIKKSRPYFELKAKYTVQLEQQK---KTVDDLEAEVTLAKGEYKMSLRNLEMIS 224 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4699999999988876655443 33455778888887766654422 2344455555555566788999999999
Q ss_pred Hhhhccccc
Q 004600 456 SEVNRLRDE 464 (743)
Q Consensus 456 ~~I~kLRDe 464 (743)
.+|+.=|-.
T Consensus 225 d~IHeeRss 233 (426)
T KOG2008|consen 225 DEIHEERSS 233 (426)
T ss_pred HHHHHhhhh
Confidence 999877654
No 101
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=28.07 E-value=5.9e+02 Score=25.05 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHHHHhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccccc
Q 004600 386 LDKMLAWEKK-LFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDE 464 (743)
Q Consensus 386 LdKLyAWEKK-LY~EVKa~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDe 464 (743)
+..+..|.|+ ...++...+++...|..-++.+.+ ..-++-+..|..+...-.--...+-..+...+.+. +
T Consensus 88 ~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~k--------k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-e 158 (191)
T cd07610 88 LEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAK--------KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQERE-E 158 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-H
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 004600 465 ELYPKLVALVNGMAKMWENMCIH 487 (743)
Q Consensus 465 EL~PQL~ELi~GL~~MWk~M~ec 487 (743)
++.-.+-+++.++...++....|
T Consensus 159 ~r~~~~~~~l~~~~~~~~~~~~~ 181 (191)
T cd07610 159 ERLEILKDNLKNYINAIKEIPQK 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH
No 102
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.33 E-value=6.9e+02 Score=25.61 Aligned_cols=166 Identities=14% Similarity=0.194 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccccCcccCCCCCCCCCCCCcHHH---HHHHHHHHhccC
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLN--LIPIESSLKERVTSPPRAPNPPIQA---LLHSWHDYLEKL 590 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~--l~p~e~~~~~~~~Sp~r~~aPpIf~---lC~~W~~aLdrl 590 (743)
.-.-+|+.-|......+..+++.++++...|..-=.-+ +...|... +.++-. .+..=..+++.+
T Consensus 21 eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L-----------~~~L~~~~~~~~~~~~~~~~l 89 (200)
T cd07624 21 EYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETEL-----------APLLEGVSSAVERCTAALEVL 89 (200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 44667888888888888888888887776655432210 00112111 122222 223333444444
Q ss_pred Ch---HHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCC
Q 004600 591 PD---EIAKSAISS---FAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRD 664 (743)
Q Consensus 591 pd---k~v~~AIks---F~~~v~~i~~~Q~eE~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~ 664 (743)
-+ ....+.|+. |+.+|+.++.+.. +...-.+.+.-+|.||...|.. .
T Consensus 90 ~~~~~~~f~e~Lkey~~y~~svk~~l~~R~---~~q~~~e~~~e~L~~k~~~l~~---e--------------------- 142 (200)
T cd07624 90 LSDHEFVFLPPLREYLLYSDAVKDVLKRRD---QFQIEYELSVEELNKKRLELLK---E--------------------- 142 (200)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---H---------------------
Confidence 33 334444444 4445555444433 2333345555666666554221 1
Q ss_pred chhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHH
Q 004600 665 PVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKL 727 (743)
Q Consensus 665 ~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l 727 (743)
|.+-+..++.+.+.+..|..++.+.-. .-|+..|-..-+....|...|+++.+.+
T Consensus 143 -v~~a~~~~e~~~~~~~~E~~rF~~~K~-------~d~k~~l~~~a~~qi~~~~~~~~~We~~ 197 (200)
T cd07624 143 -VEKLQDKLECANADLKADLERWKQNKR-------QDLKKILLDMAEKQIQYYEQCLAAWEEV 197 (200)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122334566677777777777775422 2344444444444555555555555544
No 103
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.11 E-value=7.2e+02 Score=26.53 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=22.0
Q ss_pred hHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHH
Q 004600 402 RAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAA 436 (743)
Q Consensus 402 a~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~ 436 (743)
+-++-|..|++.|+...+.-.-|.....++|.+.-
T Consensus 124 ~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~~K 158 (261)
T cd07674 124 HLQKSRENYHSKCVEQERLRREGVPQKELEKAELK 158 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34566889999998886664444444445555433
No 104
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=27.07 E-value=5e+02 Score=26.89 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=47.6
Q ss_pred hHHHHhHHHHHHHHHHHhhhhcC-CchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhc
Q 004600 402 RAELMKLEYQRKVAMLNKLKKRG-SANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNR 460 (743)
Q Consensus 402 a~E~lR~eyeKK~~~Lr~qd~rG-ad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~k 460 (743)
.-+.+...++||-..|-++...| ....||+.....|+.++.+...+-+..+.||..|.+
T Consensus 116 ~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~ 175 (216)
T cd07627 116 YWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKS 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888876543 246899999999999999999999999999988753
No 105
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=27.02 E-value=7.4e+02 Score=25.84 Aligned_cols=46 Identities=7% Similarity=0.134 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHH
Q 004600 670 QIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDF 716 (743)
Q Consensus 670 k~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~F 716 (743)
..+++..+.-+..-...|..+|.......- -...-+|.+|+.+-.|
T Consensus 156 ~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~-~~~~~~~~~~~~~Q~l 201 (236)
T cd07651 156 NAKLNKAQSSINSSRRDYQNAVKALRELNE-IWNREWKAALDDFQDL 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344555555566667889999998877654 3666667777666543
No 106
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=26.81 E-value=5.5e+02 Score=27.35 Aligned_cols=80 Identities=18% Similarity=0.151 Sum_probs=54.6
Q ss_pred HHHHhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHh-hhccccchhhHHHHHHHHH
Q 004600 398 EEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSE-VNRLRDEELYPKLVALVNG 476 (743)
Q Consensus 398 ~EVKa~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~-I~kLRDeEL~PQL~ELi~G 476 (743)
.+=|-=|.-|+.||-+-+.|++-+ +.-|.+-.++.-.--|+.++|..|... ++.| .+|.+||..
T Consensus 137 k~RKkLe~rRLd~D~~K~r~~kae---------~elr~A~~kf~~~~E~a~~~M~~il~~~~e~l------~~L~~lv~A 201 (220)
T cd07617 137 KERRLLQNRRLDLDACKARLKKAE---------HELRVAQTEFDRQAEVTRLLLEGISSTHVNHL------RCLHEFVEA 201 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH------HHHHHHHHH
Confidence 455566888999999988887721 344555555555556777777777665 5444 578888886
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 004600 477 MAKMWENMCIHHDSQLTIVSELK 499 (743)
Q Consensus 477 L~~MWk~M~ecHq~Q~~ii~~~k 499 (743)
.++.|+.=.+++.++.
T Consensus 202 -------Ql~Yh~q~~e~L~~l~ 217 (220)
T cd07617 202 -------QATYYAQCYRHMLDLQ 217 (220)
T ss_pred -------HHHHHHHHHHHHHHHH
Confidence 6777777677777664
No 107
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=26.61 E-value=8.3e+02 Score=32.03 Aligned_cols=94 Identities=13% Similarity=0.254 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHHHHHHHHH
Q 004600 523 TVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSF 602 (743)
Q Consensus 523 ~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v~~AIksF 602 (743)
.|++..+..||.+|. .++..++. .....+|.+.. --.|.++.+|..--..-.- .+++..+
T Consensus 312 ~elQ~LR~~fc~ll~---~l~~~~~~-~~se~fpfe~R-------------kslF~l~~eWCGy~~~~~~---~~~~s~~ 371 (1120)
T PF14228_consen 312 WELQRLRYHFCGLLR---NLAVGIVK-AKSEWFPFEAR-------------KSLFNLFEEWCGYSPSQWG---QDGRSDY 371 (1120)
T ss_pred HHHHHHHHHHHHHHH---HHHHHhhh-chhhcCCHHHH-------------HHHHHHHHHHhhhhccccc---ccchhhH
Confidence 788899999999984 23333321 11111333321 1389999999976443211 2233333
Q ss_pred HHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 603 AAVIKTIM---LHQEEEMKLKEKCEETRKELLRKTHAYEE 639 (743)
Q Consensus 603 ~~~v~~i~---~~Q~eE~kqk~k~e~~~KeleKK~~~l~~ 639 (743)
...+..+. .++..+..-|. .+.+|+|++.+.|+-
T Consensus 372 rre~~r~~~~~~~r~kd~~~~~---~~~~~Ie~~~~~L~~ 408 (1120)
T PF14228_consen 372 RREVERYKSSQLQREKDSRERA---TAEMEIEEQKRNLRT 408 (1120)
T ss_pred HHHHHHHHHHHHhhhccchhhh---HHHHHHHHHHHHHHH
Confidence 33333222 22222222222 567899998877774
No 108
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=26.30 E-value=9.6e+02 Score=29.86 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHhhhh----cccchhhhccCCCCCCCCchhhhHHHHHHH
Q 004600 603 AAVIKTIMLHQEEEMKLKE-KCEETRKELLRKT-HAYEEWHRKYKK----THSEESEAERGDDANTRDPVLDRQIVIESL 676 (743)
Q Consensus 603 ~~~v~~i~~~Q~eE~kqk~-k~e~~~KeleKK~-~~l~~~~~k~~~----~~~~~~~~~~~~~~~~~~~v~ekk~~le~l 676 (743)
+.++..|+..|++|+-.|. ..+.+.++|.+|. .-|..|..|+.. -++. +....+.+..-+-.+..|
T Consensus 272 vqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQ--------eleh~~~~~qL~~qVAsL 343 (739)
T PF07111_consen 272 VQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQ--------ELEHRDSVKQLRGQVASL 343 (739)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHhhhHHHHHHHHHHHH
Confidence 4556789999999998777 4889999999997 556779888742 1221 122334455555566666
Q ss_pred HHhhHHHHHHHHHHHH---------HHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004600 677 RKRLEEETEAFRRHCL---------QVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSIT 731 (743)
Q Consensus 677 rkrleeE~~~h~k~v~---------~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s 731 (743)
.+.|..+-....-... .+-.+...+||.-|-..+++......-+..+-+.|...+
T Consensus 344 Qeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~ 407 (739)
T PF07111_consen 344 QEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVS 407 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655443222211111 111233346888888888777765555555544444433
No 109
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=25.23 E-value=8.5e+02 Score=25.97 Aligned_cols=97 Identities=11% Similarity=0.105 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHHH
Q 004600 517 RTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAK 596 (743)
Q Consensus 517 aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v~ 596 (743)
-|.||-..++.-+-+-.++-.+|+.+-+.|+.+=+.+..-. . .|+.+.
T Consensus 17 ~~~~~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~---------------~-----------------dDe~i~ 64 (215)
T cd07631 17 YFNQLFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLG---------------G-----------------DDEVMS 64 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC---------------C-----------------CcHHHH
Confidence 47899999999999999999999999999999887653110 0 566677
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004600 597 SAISSFAAVIKTIMLHQEEEMK----------------LKEKCEETRKELLRKTHAYEEWHRKYK 645 (743)
Q Consensus 597 ~AIksF~~~v~~i~~~Q~eE~k----------------qk~k~e~~~KeleKK~~~l~~~~~k~~ 645 (743)
++|+.|+..|..|...+..=.. .=+++-.+.|.|+|-...++....||.
T Consensus 65 ~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a 129 (215)
T cd07631 65 STLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYS 129 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 7777777777655543322100 112344666777777777766666664
No 110
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=25.13 E-value=5.5e+02 Score=23.72 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=33.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600 583 WHDYLEKLPDEIAKSAISSFAAVIKTIMLH-QEEEMKLKEKCEETRKELLRKTHAYEE 639 (743)
Q Consensus 583 W~~aLdrlpdk~v~~AIksF~~~v~~i~~~-Q~eE~kqk~k~e~~~KeleKK~~~l~~ 639 (743)
|...++. ..++|-.++...|..+|.+|.- ++.-.+.-+ .++...++++++.|..
T Consensus 2 l~~~~~~-~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LK--ksYe~rwek~v~~L~~ 56 (87)
T PF12709_consen 2 LKKKLEE-SQKEVEKAVEKVARELHALYSSKHETKVKALK--KSYEARWEKKVDELEN 56 (87)
T ss_pred HHhHHhh-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--hhHHHHHHHHHHHHHH
Confidence 4444444 5678899999999999999853 222222212 2444556666666653
No 111
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=24.22 E-value=5.4e+02 Score=23.41 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHhhhhcCCchh-------hhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhc
Q 004600 407 KLEYQRKVAMLNKLKKRGSANE-------MLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNR 460 (743)
Q Consensus 407 R~eyeKK~~~Lr~qd~rGad~~-------kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~k 460 (743)
..+.+.-...|.++...|.|.. .++.|++.|-+...||.-++..+..+...-..
T Consensus 20 ~kE~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 80 (90)
T PF02970_consen 20 EKEVEEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEG 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcC
Confidence 3444444455556666676654 46778899999999999888888777555444
No 112
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=23.61 E-value=7.6e+02 Score=24.80 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhh
Q 004600 576 IQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEA 654 (743)
Q Consensus 576 If~lC~~W~~aLdrlpdk~v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~ 654 (743)
|=++-..|...|.-+.+ |=|.+---.-..+.||.+- .+.-.-++.+.|||.--+..|..-+-.|+..-.
T Consensus 10 iDAfW~nWs~~L~lfs~-----agKQiEQlTLe~L~QQQdalhK~t~gvd~leKel~~~~~~~n~q~te~vkq~t----- 79 (165)
T TIGR02131 10 IDAFWENWSKGLQLFAD-----AGKQIEQLTLEALEQQQDALHKATEGLDALDKELKAELADFNNKTTDNLKKLA----- 79 (165)
T ss_pred HHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 66788999999887654 3344444444455555554 577788888999988888777765555542221
Q ss_pred ccCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHH
Q 004600 655 ERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEK 726 (743)
Q Consensus 655 ~~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~ 726 (743)
=.++--..++=..|...+....+..+.|--+++|.-|=|+-.-|-...-+-.|.
T Consensus 80 ------------------GNsl~Dqi~EWq~k~~E~~~~lhqL~~~ptKtSlSil~Qt~~QfeettkqfiEq 133 (165)
T TIGR02131 80 ------------------GNALADQIEEWQDKTHEALAHLHELFFNPSKSSLSILKQAQEQFEETTKQFIEE 133 (165)
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222444555677777788888899999999999999888887766665554
No 113
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.41 E-value=9.2e+02 Score=25.73 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=29.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHH
Q 004600 672 VIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSD 715 (743)
Q Consensus 672 ~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~ 715 (743)
.|+.++.|++.-...|.+++....... ..+...+|.||+.+-.
T Consensus 151 ~leK~~~K~~ka~~~y~~~~~ky~~~~-~~~~~~m~~~~~~~Q~ 193 (261)
T cd07674 151 ELEKAELKTKKAAESLRGSVEKYNRAR-GDFEQKMLESAQKFQD 193 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 556666677666667888777776544 4577888888775543
No 114
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=23.24 E-value=8.9e+02 Score=25.50 Aligned_cols=37 Identities=8% Similarity=0.001 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKL 552 (743)
Q Consensus 516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l 552 (743)
.....||..+..-...+.++++.=|.|+.+..+-..-
T Consensus 2 ~~v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~ 38 (215)
T cd07604 2 NTVGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVEN 38 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456789999999999999999999999998876653
No 115
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.80 E-value=8.2e+02 Score=29.44 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhH-----------------HHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhh
Q 004600 389 MLAWEKKLFEEVKRA-----------------ELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTM 451 (743)
Q Consensus 389 LyAWEKKLY~EVKa~-----------------E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~Vaiqsv 451 (743)
|+.-|.|+|+=-|.. |.+|+-| =|-+|-..+.-|- +-..|-+.+ +|.-.||++
T Consensus 176 ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFy--l~lql~yy~~~gq----~rt~k~~lk----QLQ~siqti 245 (629)
T KOG2300|consen 176 LLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFY--LVLQLSYYLLPGQ----VRTVKPALK----QLQDSIQTI 245 (629)
T ss_pred HHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH--HHHHHHHHhcccc----hhhhHHHHH----HHHHHHhcc
Confidence 456677999877743 4455555 3555656665553 333344444 555556666
Q ss_pred HHHHHhhhccccchhhH-------------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhCCCCccccccc-----
Q 004600 452 DSSVSEVNRLRDEELYP-------------KLVALVNGMAKM----WENMCIHHDSQLTIVSELKPLDIAHAVKE----- 509 (743)
Q Consensus 452 dsiS~~I~kLRDeEL~P-------------QL~ELi~GL~~M----Wk~M~ecHq~Q~~ii~~~k~L~~~~s~~~----- 509 (743)
.+-| ++-|+++++ |+..||+-.+-| =+-|.+|-+.|-++|.+...+.--.....
T Consensus 246 st~~----~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~ 321 (629)
T KOG2300|consen 246 STSS----RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMF 321 (629)
T ss_pred CCCC----CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 5543 566777654 677777766544 56678888889999988654432211100
Q ss_pred ------------CchhhHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHhhhc
Q 004600 510 ------------TTQHHHERTEELFTVVQKWHTEFEK--FVN---HQKQFIQALTSWLKLN 553 (743)
Q Consensus 510 ------------tse~h~~aT~qLE~el~~W~ssF~~--~I~---~Qk~YV~aLn~WL~l~ 553 (743)
-.-.|++-|++=-..+.+|+..|.. +.. +|-.|+..|+.==..|
T Consensus 322 km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~ 382 (629)
T KOG2300|consen 322 KMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNC 382 (629)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcch
Confidence 0113455566666778899999887 444 4555555544433333
No 116
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=22.66 E-value=5.9e+02 Score=28.83 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=16.8
Q ss_pred chhhhHHHHHHHHHhhHHHHH
Q 004600 665 PVLDRQIVIESLRKRLEEETE 685 (743)
Q Consensus 665 ~v~ekk~~le~lrkrleeE~~ 685 (743)
.|.+||.+|-.+++.|..-+.
T Consensus 188 vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 188 VLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhc
Confidence 568999999999988876443
No 117
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=22.52 E-value=9e+02 Score=25.25 Aligned_cols=88 Identities=10% Similarity=0.102 Sum_probs=62.1
Q ss_pred HHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 004600 404 ELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWEN 483 (743)
Q Consensus 404 E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLRDeEL~PQL~ELi~GL~~MWk~ 483 (743)
....-.++||-..+-++...|- ..||+..+..|..++++...+-+-.+.||..|. .||---=.+.+..|..|...
T Consensus 126 q~a~~~l~kkr~~~~Kl~~~~~-~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k----~El~rF~~erv~dfk~~l~~ 200 (224)
T cd07623 126 QNAQQTLTKKREAKAKLELSGR-TDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIK----KEIERFEKNRVKDFKDIIIK 200 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3445566788888888877774 469999999999999999999999999998886 45555545556666555555
Q ss_pred HHHHHH-HHHHHHH
Q 004600 484 MCIHHD-SQLTIVS 496 (743)
Q Consensus 484 M~ecHq-~Q~~ii~ 496 (743)
.++..= .|.++|.
T Consensus 201 ~le~~i~~q~~~~~ 214 (224)
T cd07623 201 YLESLLNTQQQLIK 214 (224)
T ss_pred HHHHHHHHHHHHHH
Confidence 554432 3444443
No 118
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=22.48 E-value=1.6e+02 Score=34.02 Aligned_cols=15 Identities=47% Similarity=0.882 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCCCCC
Q 004600 81 LSSLDTLPPPPPPLP 95 (743)
Q Consensus 81 pp~~~~~PPPPPP~P 95 (743)
+|+...+|-.+||+|
T Consensus 474 ~p~~~~~pls~PPlP 488 (563)
T KOG1785|consen 474 IPSVDEPPLSLPPLP 488 (563)
T ss_pred CCccccCCCCCCCCC
Confidence 333334444444444
No 119
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=22.03 E-value=1.2e+03 Score=28.04 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCc
Q 004600 532 FEKFVNHQKQFIQALTSWLKLNLIPIESS 560 (743)
Q Consensus 532 F~~~I~~Qk~YV~aLn~WL~l~l~p~e~~ 560 (743)
+.+++.+-|+|++.|-+-|.-.|+|.-.+
T Consensus 106 Lk~~lesEkey~~eLq~lL~t~L~Plq~s 134 (661)
T KOG2070|consen 106 LKNILESEKEYSKELQTLLSTYLRPLQTS 134 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 45889999999999999999888886543
No 120
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=21.60 E-value=9.3e+02 Score=25.11 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004600 512 QHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKL 552 (743)
Q Consensus 512 e~h~~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l 552 (743)
+.+.+-..+||..|..-+.+-..+|+.+|+-..++..-=.-
T Consensus 15 ~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s 55 (224)
T cd07623 15 EEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKS 55 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999988876653
No 121
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.33 E-value=9.6e+02 Score=25.16 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 004600 531 EFEKFVNHQKQFIQALTSWLKLN 553 (743)
Q Consensus 531 sF~~~I~~Qk~YV~aLn~WL~l~ 553 (743)
-|..=...-++|.+.|..|-+..
T Consensus 27 f~keRa~iE~eYak~L~kLak~~ 49 (239)
T cd07647 27 FLKQRAKAEEDYGKALLKLSKSA 49 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444567899999999998764
No 122
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=20.81 E-value=1.1e+03 Score=25.52 Aligned_cols=103 Identities=20% Similarity=0.309 Sum_probs=56.8
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-C-CCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 004600 458 VNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSEL-K-PLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKF 535 (743)
Q Consensus 458 I~kLRDeEL~PQL~ELi~GL~~MWk~M~ecHq~Q~~ii~~~-k-~L~~~~s~~~tse~h~~aT~qLE~el~~W~ssF~~~ 535 (743)
|+.|. .-||-+-+||. |-.-.+.|..++..+ + ++|...-.......-+-+|.+|-..|..-+.-|-++
T Consensus 14 ~~d~k--~s~P~~~d~v~--------ka~K~~saL~a~~~A~~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~i 83 (231)
T cd07643 14 INDMK--GSYPLWEDFVS--------KATKLHSQLRATIVATSAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSI 83 (231)
T ss_pred HHHhc--cCCccHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 44443 45565555553 444555555555443 2 223221111000011236788888888888888777
Q ss_pred HHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCCh
Q 004600 536 VNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPD 592 (743)
Q Consensus 536 I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpd 592 (743)
-+.-|.|..+|++=|-. | +-.=.++|...+-.|..
T Consensus 84 E~~lk~f~~~L~~~lI~---p-------------------Le~k~E~wkk~~~~ldK 118 (231)
T cd07643 84 ETKLKQFTSALMDCLVN---P-------------------LQEKIEEWKKVANQLDK 118 (231)
T ss_pred HHHHHHHHHHHHHHHhH---H-------------------HHHHHHHHHHHHHHHHH
Confidence 77777777777664442 2 33445788877766544
No 123
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=20.73 E-value=1.1e+03 Score=30.49 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHH-HHHHHHH
Q 004600 674 ESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHAS-FDAYEKL 727 (743)
Q Consensus 674 e~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~-~~aye~l 727 (743)
+++.+|++++..+-+++..+-++ .|.|.|+.|.+.- ..+|+..
T Consensus 931 d~~~~rl~e~la~~e~~~r~~~~-----------qi~q~ltq~~s~~~~~~~e~t 974 (1283)
T KOG1916|consen 931 DALWARLQEELAKNEKALRDLQQ-----------QITQQLTQFLSKELNAMFEKT 974 (1283)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766666555442 4666677765443 3444443
No 124
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=20.67 E-value=79 Score=32.69 Aligned_cols=8 Identities=0% Similarity=0.144 Sum_probs=3.4
Q ss_pred HHHHhHHH
Q 004600 13 AVARSKDR 20 (743)
Q Consensus 13 ~v~rckeR 20 (743)
+...|++|
T Consensus 108 ~E~~~R~~ 115 (225)
T KOG3397|consen 108 TEKWMREK 115 (225)
T ss_pred HHHHHHHh
Confidence 33444443
No 125
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=20.65 E-value=4e+02 Score=25.20 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=40.1
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhhhccc
Q 004600 394 KKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLR 462 (743)
Q Consensus 394 KKLY~EVKa~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I~kLR 462 (743)
|-|--|.|. |+-+++-++.-+-=-.-+.|..-...+|+.+..+.+----|.---|+||+.|+.+-+|-
T Consensus 42 r~~r~~MKE-ER~K~E~~~q~r~rES~~Er~K~~~s~~~~q~Lm~rQN~mm~~qqqsidslsksvgkla 109 (121)
T PF10669_consen 42 RQVRIRMKE-ERSKKEEKRQKRNRESKRERQKFIWSMNKQQSLMNRQNNMMKQQQQSIDSLSKSVGKLA 109 (121)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHhHHhhhhHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 345555555 55444443322222222334444556777777766666666667799999999988763
No 126
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=20.56 E-value=1.1e+03 Score=25.42 Aligned_cols=30 Identities=13% Similarity=0.346 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004600 522 FTVVQKWHTEFEKFVNHQKQFIQALTSWLK 551 (743)
Q Consensus 522 E~el~~W~ssF~~~I~~Qk~YV~aLn~WL~ 551 (743)
...+..++=+..++|..=|+|.+||++=-.
T Consensus 12 kni~eqfnP~lrnLv~lGk~Y~KA~~a~~~ 41 (226)
T cd07645 12 KNVMEQFNPGLRNLINLGKNYEKAVNAMVL 41 (226)
T ss_pred HHHHHhcCHHHHHHHHHhhHHHHHHHHHHH
Confidence 356677777888888888888888877654
No 127
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=20.03 E-value=7.9e+02 Score=23.62 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004600 618 KLKEKCEETRKELLRKTHAYEEWHRKYK 645 (743)
Q Consensus 618 kqk~k~e~~~KeleKK~~~l~~~~~k~~ 645 (743)
+.+.+.+...++|+.+...|+...+++.
T Consensus 40 ~l~~~~~~~~~~l~~~~~el~~~~~~l~ 67 (158)
T PF03938_consen 40 KLQEKFKALQKELQAKQKELQKLQQKLQ 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666666666666653
Done!