Query 004600
Match_columns 743
No_of_seqs 234 out of 315
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 18:52:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004600.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1896-1900//hhsearch_pdb/004600hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 1.0 1 1 36.4 3.3 21 594-614 356-376 (449)
2 2z73_A Rhodopsin; visual pigme 1.0 1 1 34.0 -0.7 12 514-525 256-267 (448)
3 2efl_A Formin-binding protein 1.0 1 1 25.9 21.9 99 614-734 179-277 (305)
4 4h8s_A DCC-interacting protein 1.0 1 1 25.5 18.5 32 379-410 46-77 (407)
5 3haj_A Human pacsin2 F-BAR; pa 1.0 1 1 24.7 19.7 81 397-477 146-236 (486)
6 2x3v_A Syndapin I, protein kin 1.0 1 1 22.4 18.8 158 516-735 131-289 (337)
7 4dyl_A Tyrosine-protein kinase 1.0 1 1 21.2 19.8 158 300-475 24-214 (406)
8 2j9u_A VPS28, vacuolar protein 1.0 1 1 21.1 5.4 80 448-535 15-94 (96)
9 2efk_A CDC42-interacting prote 1.0 1 1 20.9 21.0 194 515-730 13-231 (301)
10 2q12_A DIP13 alpha, DCC-intera 1.0 1 1 20.5 18.1 193 515-732 34-227 (265)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=1.00 E-value=1 Score=36.36 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999569
Q 004600 594 IAKSAISSFAAVIKTIMLHQE 614 (743)
Q Consensus 594 ~v~~AIksF~~~i~~i~~~Q~ 614 (743)
.+.+|++.+...+..|.....
T Consensus 356 ~~eeal~~~~~~~~~i~~~~~ 376 (449)
T 3iot_A 356 TVDAALAAAQTNAAAMATLEK 376 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998754599
No 2
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=1.00 E-value=1 Score=33.98 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 689799999999
Q 004600 514 HHERTEELFTVV 525 (743)
Q Consensus 514 h~~aT~qLE~el 525 (743)
+++++..|-..+
T Consensus 256 ~~k~~~~l~~iv 267 (448)
T 2z73_A 256 EMRLAKISIVIV 267 (448)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 788899999999
No 3
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=1.00 E-value=1 Score=25.86 Aligned_cols=99 Identities=9% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999779999999997799999998621015520110149998998901466899999988459999999988899
Q 004600 614 EEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQ 693 (743)
Q Consensus 614 ~eE~kqk~k~e~~~KelekK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~ekk~~le~lrkrleeE~~~~~~~~~~ 693 (743)
....+.+.+++.+..+|...+..+....+.+.....+ ..++.|. .+|+++..+.+.+..
T Consensus 179 ~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~--------------------~~~~~lQ-~le~~r~~~lk~~l~ 237 (305)
T 2efl_A 179 QQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIP--------------------NIFQKIQ-EMEERRIVRMGESMK 237 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--------------------HHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 9999999999988999999999998889999999988--------------------9999999-988999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76510032202558999999999999999999999772105
Q 004600 694 VREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQ 734 (743)
Q Consensus 694 tr~~tl~sLq~gLp~vFqAl~~Fs~~~~~aye~l~~~s~~~ 734 (743)
.-.....++...+..+++.|..... .++.-.++..+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~-~id~~~D~~~fi~~~ 277 (305)
T 2efl_A 238 TYAEVDRQVIPIIGKCLDGIVKAAE-SIDQKNDSQLVIEAY 277 (305)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHC
T ss_conf 9999998722789999999999998-649464599999974
No 4
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=25.49 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34589999999999999999998678985999
Q 004600 379 YETLAIVLDKMLAWEKKLFEEVKRAELMKLEY 410 (743)
Q Consensus 379 ~~shssTLdKLyAWEKKLY~EVKa~E~lR~~y 410 (743)
...+...++.|=.|=+||++.+|.--..-..|
T Consensus 46 l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~ 77 (407)
T 4h8s_A 46 LSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEM 77 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999
No 5
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=1.00 E-value=1 Score=24.75 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHH
Q ss_conf 99998678985999999999975552--------1983366598999999454568888876687887500022--2004
Q 004600 397 FEEVKRAELMKLEYQRKVAMLNKLKK--------RGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLR--DEEL 466 (743)
Q Consensus 397 Y~EVKa~E~lR~~yeKK~~~Lr~ld~--------rGad~~kidKTra~Vk~L~Tri~VaiqsidsiS~~I~kLR--DeEL 466 (743)
-+-.+.-++.|..|+++|+....... .+.....++|.+.-+.+...++.-+-..-.......++.| =++.
T Consensus 146 ~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~ 225 (486)
T 3haj_A 146 AKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMEN 225 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999998740465589999999999999999999999999999999999878999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 58999999889
Q 004600 467 YPKLVALVNGM 477 (743)
Q Consensus 467 ~PQL~ELi~GL 477 (743)
+|++++-+|-|
T Consensus 226 ~~~~~~~lQ~l 236 (486)
T 3haj_A 226 MEQVFEQCQQF 236 (486)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 6
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=1.00 E-value=1 Score=22.37 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 97999999999999989989998999999999974400444567666778999999999199999999997512890789
Q 004600 516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIA 595 (743)
Q Consensus 516 ~aT~qLE~el~~W~~sF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~SP~r~~aPpIf~lC~~W~~aldrlpdk~v 595 (743)
....+++.....|...+..+-++.+.|-..--..-..-. ..+...... .+..+
T Consensus 131 ~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~-~~~~~~~~~------------------------~~s~k-- 183 (337)
T 2x3v_A 131 EAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMT-REMNSKTEQ------------------------SVTPE-- 183 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSS------------------------CCCHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCC------------------------CCCHH--
T ss_conf 998899999999999999999999999999998999885-775435676------------------------56999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999999999995699999999779999999997799999998621015520110149998998901466899999
Q 004600 596 KSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVIES 675 (743)
Q Consensus 596 ~~AIksF~~~i~~i~~~Q~eE~kqk~k~e~~~KelekK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~ekk~~le~ 675 (743)
.+-..+....+.+.+++.+..+|...+..+......| ... ....++.
T Consensus 184 ------------~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~-~~~--------------------~~~~~~~ 230 (337)
T 2x3v_A 184 ------------QQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQY-MEG--------------------MEQVFEQ 230 (337)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------------------HHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------------------HHHHHHH
T ss_conf ------------9999999999999999999999999999999853999-999--------------------9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 988459999999988899765100322-025589999999999999999999997721057
Q 004600 676 LRKRLEEETEAFRRHCLQVREKSLGSL-KLRLPDLFRAVSDFAHASFDAYEKLRSITQSQN 735 (743)
Q Consensus 676 lrkrleeE~~~~~~~~~~tr~~tl~sL-q~gLp~vFqAl~~Fs~~~~~aye~l~~~s~~~~ 735 (743)
|. .+|+++..+.+.+...-..+++.. ...+..+++.|.... ..++.-.++..+....+
T Consensus 231 ~Q-~le~~Rl~~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~i-~~id~~~Di~~fi~~~~ 289 (337)
T 2x3v_A 231 CQ-QFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYRELEQAI-RGADAQEDLRWFRSTSG 289 (337)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHCGGGSTHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHS
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHC
T ss_conf 99-9999999999999999999886442246899999999999-97596889999999838
No 7
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=1.00 E-value=1 Score=21.24 Aligned_cols=158 Identities=16% Similarity=0.226 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHCCCCCHHH
Q ss_conf 99999999999998410424677665303567777533543332343320000013456668999950110011240003
Q 004600 300 LMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDY 379 (743)
Q Consensus 300 L~ev~keId~~FlkAsesg~eVs~lLEa~k~~y~~~~~~~rg~~~~Sskv~~~itW~rS~~~~~~~~~~~~~~~~~~~~~ 379 (743)
=.+.+.+|.+.|-.=|..-.+-|+-|..=--.|...-. ++.- ..+.+. -+|..- .. ..+....... ...
T Consensus 24 g~~lledl~~F~reRA~IE~eYAk~L~kLakk~~~k~~--~~~~-~~~tl~--~aW~~l-l~----ete~~a~~H~-~la 92 (406)
T 4dyl_A 24 ELRLLEGMRKWMAQRVKSDREYAGLLHHMSLQDSGGQS--RAIS-PDSPIS--QSWAEI-TS----QTEGLSRLLR-QHA 92 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCSHHH--HHHHHH-HH----HHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCC-CCCHHH--HHHHHH-HH----HHHHHHHHHH-HHH
T ss_conf 78999999999999999999999999999998734556--6889-877399--999999-99----9999999999-999
Q ss_pred HHHHH-HHHHHHHHHH------H------------HHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHH
Q ss_conf 45899-9999999999------9------------99999-867898599999999997555219833---665989999
Q 004600 380 ETLAI-VLDKMLAWEK------K------------LFEEV-KRAELMKLEYQRKVAMLNKLKKRGSAN---EMLEKTKAA 436 (743)
Q Consensus 380 ~shss-TLdKLyAWEK------K------------LY~EV-Ka~E~lR~~yeKK~~~Lr~ld~rGad~---~kidKTra~ 436 (743)
.++.+ .+++|-.|-| | +..=+ +.-++.|..|++.|+-......+-.+. ..++|.+.-
T Consensus 93 e~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k 172 (406)
T 4dyl_A 93 EDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDK 172 (406)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99987778999999999999999999999999999999999999999999999999999999887624457249999999
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHH
Q ss_conf 99-------45456888887668788750002220---04589999998
Q 004600 437 VA-------HLHTKYVVDMQTMDSSVSEVNRLRDE---ELYPKLVALVN 475 (743)
Q Consensus 437 Vk-------~L~Tri~VaiqsidsiS~~I~kLRDe---EL~PQL~ELi~ 475 (743)
.. .....|..++++. |+.++. +.+|++++-++
T Consensus 173 ~~k~~~~~~~a~neY~~~l~~~-------N~~~~~yy~~~lp~~~d~lQ 214 (406)
T 4dyl_A 173 YVRSLWKLFAHHNRYVLGVRAA-------QLHHQHHHQLLLPGLLRSLQ 214 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999-------88878899963479999999
No 8
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=1.00 E-value=1 Score=21.14 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 87668788750002220045899999988999899999979999999996189884334556722368979999999999
Q 004600 448 MQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQK 527 (743)
Q Consensus 448 iqsidsiS~~I~kLRDeEL~PQL~ELi~GL~~MWk~M~ecHq~Q~~ii~~~k~L~~~~s~~~tse~h~~aT~qLE~el~~ 527 (743)
|..||++.-.|--. ++|+|-|.+|+.++.+|=..=++.+.+-.+=...++... ...+-+| +.+.||...+..
T Consensus 15 IT~mDaLKL~~~a~--DqLhP~L~dL~~sl~r~~~~dfegk~kv~~Wl~~Ln~M~---AsdeL~e---~q~RqllfDle~ 86 (96)
T 2j9u_A 15 ITVMDALKLNYNAK--DQLHPLLAELLISINRVTRDDFENRSKLIDWIVRINKLS---IGDTLTE---TQIRELLFDLEL 86 (96)
T ss_dssp HHHHHHHHTTCCBH--HHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHTSC---TTCBCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHH--HHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC---CCCCCCH---HHHHHHHHHHHH
T ss_conf 99999998512568--766705999998736799988761889999999982886---1013799---999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99989989
Q 004600 528 WHTEFEKF 535 (743)
Q Consensus 528 W~~sF~~~ 535 (743)
=|.+|...
T Consensus 87 aY~~F~~~ 94 (96)
T 2j9u_A 87 AYKSFYAL 94 (96)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999987
No 9
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=1.00 E-value=1 Score=20.94 Aligned_cols=194 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 897999999999999989989998999999999974400444----5676667789999999991999999999975128
Q 004600 515 HERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIP----IESSLKERVTSPPRAPNPPIQALLHSWHDYLEKL 590 (743)
Q Consensus 515 ~~aT~qLE~el~~W~~sF~~~I~~Qk~YV~aLn~WL~l~l~p----~e~~~~~~~~SP~r~~aPpIf~lC~~W~~aldrl 590 (743)
.+.+-+=..-+......|..=...-++|.+.|..|-+...-- .+.. +.+.++..|...+.-+
T Consensus 13 ~~~~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~~~~--------------~~~t~~~~w~~~l~~~ 78 (301)
T 2efk_A 13 ERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPE--------------SKFSQQQSFVQILQEV 78 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------C--------------TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------CCCHHHHHHHHHHHHH
T ss_conf 99999888999999999999999999999999999999735355655653--------------1010999999999999
Q ss_pred CH-------------HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 90-------------78999999999999999--------9956999999997799999999977999999986210155
Q 004600 591 PD-------------EIAKSAISSFAAVIKTI--------MLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHS 649 (743)
Q Consensus 591 pd-------------k~v~~AIksF~~~i~~i--------~~~Q~eE~kqk~k~e~~~KelekK~~~l~~~~~k~~~~~~ 649 (743)
-. ..+.+-++.|....... ...|.+=..+-..++.+.|.|++..+..+....++....
T Consensus 79 e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~- 157 (301)
T 2efk_A 79 NDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLD- 157 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 9999999999999988878999999998999999999999999999999999999999999999999999999998530-
Q ss_pred CHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20110149998998901466899999988459999999988899765100322025589999999999999999999997
Q 004600 650 EESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRS 729 (743)
Q Consensus 650 ~~~~~~~~~~~~~~~~v~ekk~~le~lrkrleeE~~~~~~~~~~tr~~tl~sLq~gLp~vFqAl~~Fs~~~~~aye~l~~ 729 (743)
.........+...+.+++.....++.-+..|..++..++..--.-...-+|.+|+.+-++-..+.....++..
T Consensus 158 -------~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~lee~r~~~lk~~l~ 230 (301)
T 2efk_A 158 -------QDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYG 230 (301)
T ss_dssp -------HCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------6766688789999999999999999999999999999988888889888799999999987999999999999
Q ss_pred H
Q ss_conf 7
Q 004600 730 I 730 (743)
Q Consensus 730 ~ 730 (743)
.
T Consensus 231 ~ 231 (301)
T 2efk_A 231 L 231 (301)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 10
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=1.00 E-value=1 Score=20.55 Aligned_cols=193 Identities=8% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 89799999999999998998999899999999997440044456766677899999999919999999999751289078
Q 004600 515 HERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEI 594 (743)
Q Consensus 515 ~~aT~qLE~el~~W~~sF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~SP~r~~aPpIf~lC~~W~~aldrlpdk~ 594 (743)
+.....|......++.+...+..+++.|+.+|+..=.-|+-....+.. -.+.+.-+.+-...|...-...
T Consensus 34 ~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~----------~~~~L~~f~~~l~ei~~~~~~l 103 (265)
T 2q12_A 34 SNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEV----------MSSTLQQFSKVIDELSSCHAVL 103 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999989999999999999999877553267999478----------9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999999999999569999999977999999999779999999862101552011014999899890146689999
Q 004600 595 AKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVIE 674 (743)
Q Consensus 595 v~~AIksF~~~i~~i~~~Q~eE~kqk~k~e~~~KelekK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~ekk~~le 674 (743)
+..+...|..-+..++...-.+.+ ...|.|+|....++.+-.||..-. -.......+.|-...|.
T Consensus 104 ~~~~~~~~~~PL~~f~~~dlk~~k------e~kk~fdk~~~~yd~al~k~~~~~---------k~k~~e~~l~Ea~~~l~ 168 (265)
T 2q12_A 104 STQLADAMMFPITQFKERDLKEIL------TLKEVFQIASNDHDAAINRYSRLS---------KKRENDKVKYEVTEDVY 168 (265)
T ss_dssp HHHHHHHTHHHHHHHHHTHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---------TSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCHHHHHHHHHHHH
T ss_conf 999999999999999998878999------999999999999999999986488---------78951146889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 998845999999998889976510032202558999999999999999999-9997721
Q 004600 675 SLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYE-KLRSITQ 732 (743)
Q Consensus 675 ~lrkrleeE~~~~~~~~~~tr~~tl~sLq~gLp~vFqAl~~Fs~~~~~aye-~l~~~s~ 732 (743)
..|+.-+...--|...+..++..----+=..|-..++|...|...+.+++. ++..+..
T Consensus 169 ~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~ 227 (265)
T 2q12_A 169 TSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLA 227 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999889999999999999999999999999987799999
Done!