Query 004602
Match_columns 743
No_of_seqs 177 out of 1175
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 18:02:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004602.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1901-1904//hhsearch_pdb/004602hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 1.0 1 1 277.8 11.7 125 2-126 3-129 (140)
2 3jue_A Arfgap with coiled-coil 1.0 1 1 271.1 9.7 126 1-127 22-152 (368)
3 2crr_A Stromal membrane-associ 1.0 1 1 263.7 8.8 121 4-127 9-132 (141)
4 3lju_X ARF-GAP with dual PH do 1.0 1 1 263.6 12.1 124 3-127 13-139 (386)
5 2iqj_A Stromal membrane-associ 1.0 1 1 262.2 7.7 121 3-126 6-129 (134)
6 3lvq_E ARF-GAP with SH3 domain 1.0 1 1 235.2 9.1 122 6-127 5-130 (497)
7 2owa_A Arfgap-like finger doma 1.0 1 1 222.3 9.4 114 5-122 17-133 (138)
8 2b0o_E UPLC1; arfgap, structur 1.0 1 1 221.6 11.9 120 6-125 24-147 (301)
9 2crw_A ARF GAP 3, ADP-ribosyla 1.0 1 1 221.2 6.9 93 1-95 8-104 (149)
10 3dwd_A ADP-ribosylation factor 1.0 1 1 218.4 7.9 119 7-125 21-146 (147)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=1.00 E-value=1 Score=277.82 Aligned_cols=125 Identities=34% Similarity=0.681 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCC--CCEEECCCCCCCHHHHHHHHH
Q ss_conf 521122389999999987177998776889999990471410120054455441299--740000147778899998882
Q 004602 2 ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKSVSMAKFTSQEVKALQE 79 (743)
Q Consensus 2 ~~r~kedek~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~Lg--HrVKSIsLD~Wt~eEI~~L~~ 79 (743)
.++.+++|+++++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|+.
T Consensus 3 ~~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 3 SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEEECHHCCCHHCCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 12677889999999998628477908889899999515045878722063102058886304316778899999999998
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 18199999995117999999999983999999999997612223688
Q 004602 80 GGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGER 126 (743)
Q Consensus 80 gGN~raN~iwEa~~~p~~~p~Pdssd~~~lreFIR~KYveKrF~~e~ 126 (743)
+||.++|++||+++++...+.|+.++...+++|||+||++|+|+.+.
T Consensus 83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~ 129 (140)
T 2olm_A 83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPP 129 (140)
T ss_dssp CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCH
T ss_pred HCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCC
T ss_conf 04499999998617722377999988999999999998498550772
No 2
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=1.00 E-value=1 Score=271.10 Aligned_cols=126 Identities=20% Similarity=0.406 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCC---CCEEECCCCCCCHHHHHHH
Q ss_conf 9521122389999999987177998776889999990471410120054455441299---7400001477788999988
Q 004602 1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKAL 77 (743)
Q Consensus 1 M~~r~kedek~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~Lg---HrVKSIsLD~Wt~eEI~~L 77 (743)
+++|.+++|+++++|+.|++.++|++|+||++++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~ 101 (368)
T 3jue_A 22 GMARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLM 101 (368)
T ss_dssp ----------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEECHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHH
T ss_conf 55310024579999999973989194887987799868950796772767799864698767467742053668999999
Q ss_pred HHCCHHHHHHHHHHCCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8218199999995117999--9999999839999999999976122236889
Q 004602 78 QEGGNQRAKEVLLKEWDPQ--RQSFPDSSNVERLRNFIKHVYVDRRYTGERN 127 (743)
Q Consensus 78 ~~gGN~raN~iwEa~~~p~--~~p~Pdssd~~~lreFIR~KYveKrF~~e~~ 127 (743)
+.+||.++|+|||+.|++. +++.|.+. .+.+++||++||++|+|+.+..
T Consensus 102 ~~~gn~~~n~~~e~~~~~~~~~kp~~~~~-~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 102 CELGNVIINQIYEARVEAMAVKKPGPSCS-RQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HHSCHHHHHHHHTTTTTTTTCCCCCTTSC-HHHHHHHHHHHHTSCTTCCSCC
T ss_pred HHHCCHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99725999999986434136869899998-8999999999998631112210
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=263.72 Aligned_cols=121 Identities=27% Similarity=0.594 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCC---CCEEECCCCCCCHHHHHHHHHC
Q ss_conf 1122389999999987177998776889999990471410120054455441299---7400001477788999988821
Q 004602 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80 (743)
Q Consensus 4 r~kedek~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~Lg---HrVKSIsLD~Wt~eEI~~L~~g 80 (743)
..+++|+++++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 89888999999999970816894887979999848714676773641486716898778155788777899999999997
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 81999999951179999999999839999999999976122236889
Q 004602 81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERN 127 (743)
Q Consensus 81 GN~raN~iwEa~~~p~~~p~Pdssd~~~lreFIR~KYveKrF~~e~~ 127 (743)
||.++|++||++++.. ...|.. + +.+++|||+||++|+|+.+..
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~-~-~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT-D-QAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS-H-HHHHHHHHHHHTSCTTCCCGG
T ss_pred CCHHHHHHHHHCCCCC-CCCCCC-H-HHHHHHHHHHHHCCCCCCCCC
T ss_conf 4299999888508854-679996-0-899999999994480628885
No 4
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=1.00 E-value=1 Score=263.60 Aligned_cols=124 Identities=23% Similarity=0.421 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCCC--CEEECCCCCCCHHHHHHHHHC
Q ss_conf 211223899999999871779987768899999904714101200544554412997--400001477788999988821
Q 004602 3 NRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTH--RVKSVSMAKFTSQEVKALQEG 80 (743)
Q Consensus 3 ~r~kedek~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~LgH--rVKSIsLD~Wt~eEI~~L~~g 80 (743)
+..+++++++++|++|++.|+|+.|||||+++|+|||+|||||||++||||||+|.| +||||+||+|+.++|++|+.+
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~ 92 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASH 92 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 44555068999999996185899475689789973896160999356135764787444331203657799999999986
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8199999995117999999999983-9999999999976122236889
Q 004602 81 GNQRAKEVLLKEWDPQRQSFPDSSN-VERLRNFIKHVYVDRRYTGERN 127 (743)
Q Consensus 81 GN~raN~iwEa~~~p~~~p~Pdssd-~~~lreFIR~KYveKrF~~e~~ 127 (743)
||.++|++||+++++. ...|...+ ...+++|||+||++|+|+.+..
T Consensus 93 gN~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 93 GNDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp SHHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred CCHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHEHHHHHCCCEEECCCC
T ss_conf 0367899986008866-7797975425788888886607978887766
No 5
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=262.20 Aligned_cols=121 Identities=27% Similarity=0.562 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCC---CCEEECCCCCCCHHHHHHHHH
Q ss_conf 21122389999999987177998776889999990471410120054455441299---740000147778899998882
Q 004602 3 NRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQE 79 (743)
Q Consensus 3 ~r~kedek~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~Lg---HrVKSIsLD~Wt~eEI~~L~~ 79 (743)
...++.|+++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|+.
T Consensus 6 ~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~ 85 (134)
T 2iqj_A 6 KSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQE 85 (134)
T ss_dssp -------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHH
T ss_conf 22757999999999997385779077696999985881478787076669886179877840016656789999999999
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 18199999995117999999999983999999999997612223688
Q 004602 80 GGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGER 126 (743)
Q Consensus 80 gGN~raN~iwEa~~~p~~~p~Pdssd~~~lreFIR~KYveKrF~~e~ 126 (743)
+||.++|++||++++.. ...|.. .+.+++|||+||++|+|+.+.
T Consensus 86 ~GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 86 MGNGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp CHHHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCTT
T ss_pred HCHHHHHHHHHHCCCCC-CCCCCC--HHHHHHHHHHHHHCCEEECCC
T ss_conf 74199999988618965-789894--589999999998378632776
No 6
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=1.00 E-value=1 Score=235.17 Aligned_cols=122 Identities=22% Similarity=0.455 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCC---CCEEECCCCCCCHHHHHHHHHCCH
Q ss_conf 22389999999987177998776889999990471410120054455441299---740000147778899998882181
Q 004602 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGN 82 (743)
Q Consensus 6 kedek~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~Lg---HrVKSIsLD~Wt~eEI~~L~~gGN 82 (743)
+.+|.++++++.|++.|+|+.|+|||+++|+|+|+|+|||||++||||||+|| +||||++||.|+.+++++|+.+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN 84 (497)
T 3lvq_E 5 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 84 (497)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 16789999999996088987265889899987984400874786688887645663301034437799999999998755
Q ss_pred HHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999995117999999999-9839999999999976122236889
Q 004602 83 QRAKEVLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGERN 127 (743)
Q Consensus 83 ~raN~iwEa~~~p~~~p~Pd-ssd~~~lreFIR~KYveKrF~~e~~ 127 (743)
..+|++||+.++....+.|. .++...+++||++||++++|..+..
T Consensus 85 ~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~~ 130 (497)
T 3lvq_E 85 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT 130 (497)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999864462568798986769999999988742022333333
No 7
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=1.00 E-value=1 Score=222.26 Aligned_cols=114 Identities=24% Similarity=0.410 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCC-C--CEEECCCCCCCHHHHHHHHHCC
Q ss_conf 122389999999987177998776889999990471410120054455441299-7--4000014777889999888218
Q 004602 5 LKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGG 81 (743)
Q Consensus 5 ~kedek~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~Lg-H--rVKSIsLD~Wt~eEI~~L~~gG 81 (743)
+..++..+++++.|++.|+|++|+|||+++|+|||+|||||||++|+||||+|| | +||||+||+|+.++|++|+.+|
T Consensus 17 ~~~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~G 96 (138)
T 2owa_A 17 FVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGG 96 (138)
T ss_dssp CBCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHC
T ss_conf 78989999999998738678807779599998277137877747405888678988781221676769999999999604
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 19999999511799999999998399999999999761222
Q 004602 82 NQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRY 122 (743)
Q Consensus 82 N~raN~iwEa~~~p~~~p~Pdssd~~~lreFIR~KYveKrF 122 (743)
|.++|++||++... .|+....++.+.||..||.+|.-
T Consensus 97 N~~an~~~e~~~~~----~~~~~~~~kY~s~~a~~Y~~kL~ 133 (138)
T 2owa_A 97 NGRARNYFKQVLGV----NFSPKTKEYASSICGRQYKQILD 133 (138)
T ss_dssp HHHHHHHHHHHTCT----TCCGGGCHHHHSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 19999999977498----99988788772299999999999
No 8
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=221.63 Aligned_cols=120 Identities=23% Similarity=0.469 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCC-C--CEEECCCCCCCHHHHHHHHHCCH
Q ss_conf 22389999999987177998776889999990471410120054455441299-7--40000147778899998882181
Q 004602 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (743)
Q Consensus 6 kedek~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~Lg-H--rVKSIsLD~Wt~eEI~~L~~gGN 82 (743)
..++..+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||+|| | +|||++||.|+.+++.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 98999999999986387989699999999986871058478587789887528875620356757899999999997388
Q ss_pred HHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999995117999999999-98399999999999761222368
Q 004602 83 QRAKEVLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGE 125 (743)
Q Consensus 83 ~raN~iwEa~~~p~~~p~Pd-ssd~~~lreFIR~KYveKrF~~e 125 (743)
.++|++||+.++......|. .++...+++||+.||++++|...
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 88999999864114677889764378899999999873311023
No 9
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=221.18 Aligned_cols=93 Identities=23% Similarity=0.502 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCC-C--CEEECCCCC-CCHHHHHH
Q ss_conf 9521122389999999987177998776889999990471410120054455441299-7--400001477-78899998
Q 004602 1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAK-FTSQEVKA 76 (743)
Q Consensus 1 M~~r~kedek~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~Lg-H--rVKSIsLD~-Wt~eEI~~ 76 (743)
|++..+ ++++++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||+|| | +||||+||. |+.++|++
T Consensus 8 m~~~~k--~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~ 85 (149)
T 2crw_A 8 MGDPSK--QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRC 85 (149)
T ss_dssp SCCCCH--HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHH
T ss_pred CCCCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEEECHHCCHHHCCCCCCCCEEECCCCCCCCCHHHHHH
T ss_conf 355788--999999999861857883887969999827715687882411253516878888001265678999999999
Q ss_pred HHHCCHHHHHHHHHHCCCC
Q ss_conf 8821819999999511799
Q 004602 77 LQEGGNQRAKEVLLKEWDP 95 (743)
Q Consensus 77 L~~gGN~raN~iwEa~~~p 95 (743)
|+.+||.++|+|||+++..
T Consensus 86 m~~~GN~~an~~~e~~~~~ 104 (149)
T 2crw_A 86 MQVGGNASASSFFHQHGCS 104 (149)
T ss_dssp HHTTCHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHCCCC
T ss_conf 9997559999999966999
No 10
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=218.45 Aligned_cols=119 Identities=24% Similarity=0.495 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCC-C--CEEECCCCCCCHHHHHHHHHCCHH
Q ss_conf 2389999999987177998776889999990471410120054455441299-7--400001477788999988821819
Q 004602 7 EDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGNQ 83 (743)
Q Consensus 7 edek~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~Lg-H--rVKSIsLD~Wt~eEI~~L~~gGN~ 83 (743)
.+++++++|+.|++.|+|++|+||++++|+|||+|||||||++|+||||+|| | +||||+||+|+.++|++|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEHHHHCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 88899999999974868882677898999868834667476754767743798877120254567799999999997559
Q ss_pred HHHHHHHHCCCCCC-CCCC--CCCHH-HHHHHHHHHHHHHCCCCCC
Q ss_conf 99999951179999-9999--99839-9999999999761222368
Q 004602 84 RAKEVLLKEWDPQR-QSFP--DSSNV-ERLRNFIKHVYVDRRYTGE 125 (743)
Q Consensus 84 raN~iwEa~~~p~~-~p~P--dssd~-~~lreFIR~KYveKrF~~e 125 (743)
++|+|||+...... .... ..+.. ..-|+.|+++++.|.|..+
T Consensus 101 ~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~~ 146 (147)
T 3dwd_A 101 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLE 146 (147)
T ss_dssp HHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999578999998888764889999999999999759957777
Done!