Query 004603
Match_columns 743
No_of_seqs 656 out of 3507
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:03:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 4E-32 8.7E-37 284.7 18.1 227 477-737 215-458 (459)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-31 2.7E-36 281.0 18.8 229 475-740 171-419 (459)
3 KOG0271 Notchless-like WD40 re 100.0 6.4E-30 1.4E-34 264.9 20.6 226 477-739 113-397 (480)
4 KOG0286 G-protein beta subunit 100.0 2.4E-28 5.3E-33 246.2 26.2 248 474-737 69-343 (343)
5 KOG0263 Transcription initiati 100.0 1.2E-28 2.6E-33 275.9 24.2 239 502-742 386-652 (707)
6 KOG0279 G protein beta subunit 100.0 8.7E-27 1.9E-31 233.9 27.3 242 473-737 29-311 (315)
7 KOG0271 Notchless-like WD40 re 100.0 1.7E-27 3.8E-32 246.9 20.4 241 477-737 155-479 (480)
8 KOG0279 G protein beta subunit 100.0 1.6E-26 3.5E-31 232.0 25.1 215 506-739 28-262 (315)
9 KOG0263 Transcription initiati 100.0 1.7E-27 3.7E-32 266.7 19.4 188 502-710 459-650 (707)
10 KOG0266 WD40 repeat-containing 99.9 1.1E-25 2.5E-30 255.0 28.3 227 479-739 159-409 (456)
11 KOG0645 WD40 repeat protein [G 99.9 2.6E-25 5.6E-30 222.5 25.7 213 505-738 72-310 (312)
12 KOG0286 G-protein beta subunit 99.9 5E-25 1.1E-29 222.4 26.9 228 475-738 51-302 (343)
13 KOG0285 Pleiotropic regulator 99.9 1.2E-25 2.5E-30 231.7 21.0 211 505-740 162-390 (460)
14 KOG0284 Polyadenylation factor 99.9 1.7E-26 3.6E-31 241.5 14.3 223 479-739 96-337 (464)
15 KOG0266 WD40 repeat-containing 99.9 7.5E-25 1.6E-29 248.4 29.1 218 505-741 214-456 (456)
16 KOG0645 WD40 repeat protein [G 99.9 1.4E-24 3.1E-29 217.2 27.3 215 507-739 28-261 (312)
17 KOG0316 Conserved WD40 repeat- 99.9 3.9E-25 8.5E-30 217.1 22.4 224 478-738 16-256 (307)
18 KOG0284 Polyadenylation factor 99.9 1.2E-26 2.7E-31 242.6 12.3 227 473-738 132-379 (464)
19 KOG0281 Beta-TrCP (transducin 99.9 1.2E-26 2.5E-31 237.9 10.7 205 507-739 208-428 (499)
20 KOG0273 Beta-transducin family 99.9 1.7E-24 3.6E-29 230.1 25.2 224 480-739 236-523 (524)
21 KOG0276 Vesicle coat complex C 99.9 1.4E-24 2.9E-29 236.6 24.8 229 478-740 12-258 (794)
22 KOG0277 Peroxisomal targeting 99.9 4.6E-25 1E-29 218.8 17.9 214 505-738 72-308 (311)
23 KOG0276 Vesicle coat complex C 99.9 1.5E-24 3.1E-29 236.4 21.9 215 501-735 62-295 (794)
24 KOG0315 G-protein beta subunit 99.9 1.4E-23 3.1E-28 207.7 24.2 192 546-739 74-288 (311)
25 KOG0265 U5 snRNP-specific prot 99.9 7.1E-24 1.5E-28 214.9 21.0 227 478-740 46-297 (338)
26 KOG0318 WD40 repeat stress pro 99.9 3.4E-23 7.4E-28 222.5 27.3 241 477-739 57-350 (603)
27 KOG0319 WD40-repeat-containing 99.9 3.9E-24 8.6E-29 237.4 19.9 229 473-739 378-619 (775)
28 KOG0295 WD40 repeat-containing 99.9 1.2E-23 2.5E-28 217.8 21.8 192 545-739 183-406 (406)
29 KOG0275 Conserved WD40 repeat- 99.9 2.4E-25 5.2E-30 226.3 9.1 230 480-737 214-507 (508)
30 KOG0292 Vesicle coat complex C 99.9 7.2E-24 1.6E-28 237.9 20.9 213 505-738 20-279 (1202)
31 PTZ00421 coronin; Provisional 99.9 1.4E-22 3.1E-27 230.2 30.5 189 549-739 69-290 (493)
32 KOG0282 mRNA splicing factor [ 99.9 4.2E-24 9.2E-29 227.9 15.4 214 505-739 226-462 (503)
33 PLN00181 protein SPA1-RELATED; 99.9 3E-22 6.5E-27 242.4 33.1 243 473-737 496-791 (793)
34 PTZ00420 coronin; Provisional 99.9 2.9E-22 6.3E-27 229.2 30.0 190 546-738 65-292 (568)
35 KOG0281 Beta-TrCP (transducin 99.9 5.4E-24 1.2E-28 218.4 13.6 239 471-738 206-476 (499)
36 KOG0291 WD40-repeat-containing 99.9 2.6E-22 5.7E-27 223.0 27.4 212 507-739 320-550 (893)
37 KOG0285 Pleiotropic regulator 99.9 7.5E-23 1.6E-27 211.1 21.2 245 474-740 165-440 (460)
38 KOG0273 Beta-transducin family 99.9 5.5E-23 1.2E-27 218.6 20.8 242 478-740 177-483 (524)
39 KOG0283 WD40 repeat-containing 99.9 1.4E-22 3E-27 229.2 24.5 242 477-738 265-575 (712)
40 KOG0291 WD40-repeat-containing 99.9 4.8E-22 1E-26 220.9 27.5 212 507-739 363-612 (893)
41 PLN00181 protein SPA1-RELATED; 99.9 1.1E-21 2.4E-26 237.4 33.4 231 479-739 483-738 (793)
42 KOG0318 WD40 repeat stress pro 99.9 1E-21 2.2E-26 211.2 25.8 147 508-674 162-353 (603)
43 PTZ00421 coronin; Provisional 99.9 2.8E-21 6.1E-26 219.7 30.7 210 476-713 72-294 (493)
44 cd00200 WD40 WD40 domain, foun 99.9 6.1E-21 1.3E-25 195.8 29.7 211 506-737 63-289 (289)
45 KOG0265 U5 snRNP-specific prot 99.9 2.9E-22 6.4E-27 203.2 19.1 195 546-741 38-248 (338)
46 KOG0643 Translation initiation 99.9 1.9E-21 4.1E-26 194.4 23.4 232 473-741 4-321 (327)
47 KOG0315 G-protein beta subunit 99.9 1E-21 2.2E-26 194.7 21.2 214 506-742 10-248 (311)
48 cd00200 WD40 WD40 domain, foun 99.9 1.4E-20 3.1E-25 193.0 30.9 226 478-739 8-249 (289)
49 KOG0295 WD40 repeat-containing 99.9 6.5E-22 1.4E-26 205.0 20.5 184 503-707 202-404 (406)
50 KOG0313 Microtubule binding pr 99.9 1.2E-21 2.6E-26 203.9 22.1 209 504-741 203-420 (423)
51 KOG0274 Cdc4 and related F-box 99.9 2.3E-21 5.1E-26 221.0 25.2 209 506-739 218-441 (537)
52 KOG0301 Phospholipase A2-activ 99.9 9.8E-22 2.1E-26 217.2 21.1 237 474-739 27-288 (745)
53 KOG0313 Microtubule binding pr 99.9 1.3E-21 2.7E-26 203.8 20.6 212 506-740 115-377 (423)
54 KOG0283 WD40 repeat-containing 99.9 6.6E-22 1.4E-26 223.7 18.8 189 546-738 257-531 (712)
55 KOG0274 Cdc4 and related F-box 99.9 5.4E-21 1.2E-25 218.1 25.5 241 473-739 219-482 (537)
56 KOG0310 Conserved WD40 repeat- 99.9 5.4E-21 1.2E-25 204.7 21.9 213 502-736 76-306 (487)
57 KOG0640 mRNA cleavage stimulat 99.9 1.8E-21 3.9E-26 197.6 16.9 217 476-709 109-335 (430)
58 KOG0264 Nucleosome remodeling 99.9 2.3E-21 5E-26 206.2 18.4 210 507-739 191-404 (422)
59 KOG0296 Angio-associated migra 99.9 1.3E-20 2.9E-25 195.4 23.5 155 505-680 75-229 (399)
60 KOG0647 mRNA export protein (c 99.9 1.8E-20 3.8E-25 190.4 23.7 229 473-740 21-282 (347)
61 KOG0293 WD40 repeat-containing 99.9 2.3E-21 5.1E-26 203.1 16.4 232 474-738 219-512 (519)
62 KOG0292 Vesicle coat complex C 99.9 1.5E-20 3.2E-25 211.6 23.0 211 507-737 64-319 (1202)
63 KOG0278 Serine/threonine kinas 99.9 7.5E-22 1.6E-26 195.5 11.3 235 472-739 7-297 (334)
64 KOG0277 Peroxisomal targeting 99.9 2.4E-21 5.2E-26 192.6 14.7 183 507-708 118-308 (311)
65 KOG0319 WD40-repeat-containing 99.9 6.2E-21 1.3E-25 212.2 18.7 191 505-712 376-580 (775)
66 KOG0294 WD40 repeat-containing 99.9 2.9E-20 6.3E-25 189.8 21.7 215 503-740 50-282 (362)
67 PTZ00420 coronin; Provisional 99.9 2.5E-19 5.5E-24 205.2 31.0 206 478-711 73-295 (568)
68 KOG0282 mRNA splicing factor [ 99.9 1.7E-21 3.6E-26 208.2 11.4 195 544-740 203-416 (503)
69 KOG0299 U3 snoRNP-associated p 99.9 2E-20 4.4E-25 198.9 19.5 239 479-739 142-410 (479)
70 KOG0300 WD40 repeat-containing 99.8 4.3E-20 9.2E-25 188.0 20.0 264 474-739 162-476 (481)
71 KOG0973 Histone transcription 99.8 3.4E-20 7.3E-25 214.5 21.7 224 507-739 26-312 (942)
72 KOG0641 WD40 repeat protein [G 99.8 4E-19 8.7E-24 173.7 25.3 240 477-738 30-348 (350)
73 KOG0289 mRNA splicing factor [ 99.8 1.5E-19 3.3E-24 190.8 23.4 243 474-737 233-504 (506)
74 KOG0308 Conserved WD40 repeat- 99.8 5.8E-20 1.3E-24 201.9 20.6 249 474-741 39-329 (735)
75 KOG0316 Conserved WD40 repeat- 99.8 9.4E-20 2E-24 179.5 19.9 192 546-739 8-213 (307)
76 KOG0305 Anaphase promoting com 99.8 1.3E-19 2.8E-24 200.6 22.0 212 506-739 229-461 (484)
77 KOG0288 WD40 repeat protein Ti 99.8 1.4E-20 3E-25 197.7 12.8 210 507-738 188-416 (459)
78 KOG0308 Conserved WD40 repeat- 99.8 3.3E-20 7.2E-25 203.8 15.9 219 506-738 37-284 (735)
79 KOG1407 WD40 repeat protein [F 99.8 2.3E-19 4.9E-24 179.2 20.1 192 480-705 21-257 (313)
80 KOG0270 WD40 repeat-containing 99.8 8.8E-20 1.9E-24 193.4 17.9 236 503-739 189-449 (463)
81 KOG0306 WD40-repeat-containing 99.8 2.7E-19 5.9E-24 199.1 22.2 234 480-737 392-662 (888)
82 KOG0267 Microtubule severing p 99.8 7.2E-21 1.6E-25 211.0 9.6 184 506-710 40-227 (825)
83 KOG0310 Conserved WD40 repeat- 99.8 1.3E-19 2.8E-24 194.1 17.4 221 480-738 27-267 (487)
84 KOG1332 Vesicle coat complex C 99.8 3.9E-19 8.3E-24 176.1 19.3 219 506-740 23-287 (299)
85 KOG0973 Histone transcription 99.8 1E-18 2.3E-23 202.3 25.8 244 477-737 67-353 (942)
86 KOG0294 WD40 repeat-containing 99.8 1.8E-18 3.8E-23 176.8 23.0 218 509-739 4-237 (362)
87 KOG4283 Transcription-coupled 99.8 1.9E-18 4.1E-23 174.9 22.5 197 506-708 56-275 (397)
88 KOG0293 WD40 repeat-containing 99.8 2.5E-19 5.4E-24 188.0 16.4 160 543-705 212-380 (519)
89 KOG0268 Sof1-like rRNA process 99.8 1.7E-19 3.7E-24 186.8 14.4 226 486-739 63-345 (433)
90 KOG0269 WD40 repeat-containing 99.8 9.7E-20 2.1E-24 203.5 13.0 211 506-734 100-335 (839)
91 KOG0289 mRNA splicing factor [ 99.8 1.4E-18 3E-23 183.6 20.6 210 507-737 232-460 (506)
92 KOG1446 Histone H3 (Lys4) meth 99.8 1.7E-17 3.6E-22 170.3 27.9 223 479-739 14-262 (311)
93 KOG0301 Phospholipase A2-activ 99.8 8.2E-19 1.8E-23 194.3 19.2 208 507-739 26-249 (745)
94 KOG0640 mRNA cleavage stimulat 99.8 7.2E-19 1.6E-23 178.8 16.9 190 546-737 103-333 (430)
95 KOG0306 WD40-repeat-containing 99.8 1.1E-18 2.4E-23 194.3 19.9 205 503-716 463-671 (888)
96 KOG0275 Conserved WD40 repeat- 99.8 9.3E-20 2E-24 185.8 10.1 181 554-737 212-421 (508)
97 KOG0264 Nucleosome remodeling 99.8 9.4E-19 2E-23 186.4 17.8 220 506-734 137-377 (422)
98 KOG0288 WD40 repeat protein Ti 99.8 1E-18 2.3E-23 183.7 16.5 207 506-737 231-459 (459)
99 KOG0296 Angio-associated migra 99.8 7.7E-18 1.7E-22 175.0 22.1 191 546-738 55-262 (399)
100 KOG1408 WD40 repeat protein [F 99.8 3E-18 6.5E-23 189.3 20.0 231 508-740 394-714 (1080)
101 KOG0646 WD40 repeat protein [G 99.8 2.7E-18 5.9E-23 183.2 19.0 182 555-738 81-306 (476)
102 KOG0772 Uncharacterized conser 99.8 3.3E-18 7.2E-23 183.8 18.8 232 478-740 166-446 (641)
103 KOG0267 Microtubule severing p 99.8 9.5E-20 2.1E-24 202.2 6.3 189 549-739 22-226 (825)
104 KOG0300 WD40 repeat-containing 99.8 1.1E-18 2.4E-23 177.7 13.4 196 544-741 137-388 (481)
105 KOG0639 Transducin-like enhanc 99.8 3E-18 6.4E-23 183.3 16.9 217 506-741 431-665 (705)
106 KOG0269 WD40 repeat-containing 99.8 3.2E-18 6.9E-23 191.5 14.2 223 476-734 130-363 (839)
107 KOG1036 Mitotic spindle checkp 99.8 6.5E-17 1.4E-21 165.3 22.3 221 475-739 9-262 (323)
108 KOG0302 Ribosome Assembly prot 99.8 1.6E-17 3.5E-22 173.1 17.3 201 507-711 166-380 (440)
109 KOG2445 Nuclear pore complex c 99.8 1.2E-16 2.7E-21 162.9 23.2 230 474-740 8-319 (361)
110 KOG1446 Histone H3 (Lys4) meth 99.8 4.6E-16 9.9E-21 159.8 27.2 189 545-736 90-300 (311)
111 KOG0643 Translation initiation 99.8 8.7E-17 1.9E-21 161.3 21.2 189 550-740 5-221 (327)
112 KOG0772 Uncharacterized conser 99.7 2.8E-17 6E-22 176.8 18.0 190 548-738 261-486 (641)
113 KOG0268 Sof1-like rRNA process 99.7 1E-17 2.3E-22 173.7 14.2 232 473-709 80-345 (433)
114 KOG0278 Serine/threonine kinas 99.7 1.8E-17 4E-22 164.5 14.6 198 475-710 96-298 (334)
115 KOG0302 Ribosome Assembly prot 99.7 3.3E-17 7.2E-22 170.8 17.1 199 508-734 226-434 (440)
116 KOG0303 Actin-binding protein 99.7 4.8E-17 1E-21 170.4 18.1 188 546-736 72-291 (472)
117 KOG0305 Anaphase promoting com 99.7 6E-17 1.3E-21 179.5 19.2 186 506-711 270-463 (484)
118 KOG0321 WD40 repeat-containing 99.7 4.8E-17 1.1E-21 178.8 17.6 214 506-738 112-390 (720)
119 KOG0299 U3 snoRNP-associated p 99.7 1.1E-16 2.3E-21 170.8 18.7 182 507-711 215-412 (479)
120 KOG1332 Vesicle coat complex C 99.7 4.6E-17 1E-21 161.5 14.6 189 506-711 70-288 (299)
121 KOG1274 WD40 repeat protein [G 99.7 3.5E-16 7.6E-21 178.3 23.5 219 482-739 16-262 (933)
122 KOG2055 WD40 repeat protein [G 99.7 5.1E-16 1.1E-20 165.6 22.6 200 471-705 205-413 (514)
123 KOG4283 Transcription-coupled 99.7 7.3E-16 1.6E-20 156.3 20.6 225 479-738 101-364 (397)
124 KOG1407 WD40 repeat protein [F 99.7 3.2E-16 6.9E-21 156.9 17.3 189 549-740 14-220 (313)
125 KOG0270 WD40 repeat-containing 99.7 3.3E-16 7.1E-21 166.5 18.4 186 506-710 256-450 (463)
126 KOG0639 Transducin-like enhanc 99.7 1.1E-16 2.5E-21 171.3 15.0 218 502-740 473-705 (705)
127 KOG1007 WD repeat protein TSSC 99.7 5.8E-16 1.3E-20 156.7 19.2 193 542-737 109-359 (370)
128 KOG1274 WD40 repeat protein [G 99.7 8.2E-16 1.8E-20 175.3 21.3 194 506-720 66-283 (933)
129 KOG0647 mRNA export protein (c 99.7 1.4E-15 3E-20 155.1 19.7 180 553-736 25-225 (347)
130 KOG2096 WD40 repeat protein [G 99.7 1.1E-15 2.3E-20 156.5 17.7 192 548-742 79-311 (420)
131 KOG0321 WD40 repeat-containing 99.7 1.2E-15 2.7E-20 167.8 18.9 222 505-740 63-348 (720)
132 KOG4328 WD40 protein [Function 99.7 1E-15 2.2E-20 163.2 17.6 241 471-739 178-450 (498)
133 KOG2048 WD40 repeat protein [G 99.7 2.5E-14 5.5E-19 158.8 28.3 233 481-738 17-274 (691)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 6.2E-14 1.3E-18 148.0 29.9 209 508-739 45-279 (300)
135 KOG2096 WD40 repeat protein [G 99.7 8.9E-15 1.9E-19 149.8 21.9 244 473-737 80-400 (420)
136 KOG0646 WD40 repeat protein [G 99.6 7.9E-15 1.7E-19 156.9 20.0 183 505-709 92-307 (476)
137 KOG0641 WD40 repeat protein [G 99.6 2.8E-14 6E-19 140.0 22.1 212 479-708 89-348 (350)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.5E-13 3.3E-18 145.0 28.6 209 507-739 2-237 (300)
139 KOG4378 Nuclear protein COP1 [ 99.6 8.1E-15 1.8E-19 157.2 18.7 212 478-709 53-280 (673)
140 KOG1273 WD40 repeat protein [G 99.6 1.3E-14 2.8E-19 148.5 18.6 177 558-739 26-226 (405)
141 KOG0642 Cell-cycle nuclear pro 99.6 4.3E-15 9.2E-20 162.1 16.0 221 502-738 302-560 (577)
142 KOG1273 WD40 repeat protein [G 99.6 4E-14 8.6E-19 145.0 21.5 222 482-739 26-280 (405)
143 KOG1445 Tumor-specific antigen 99.6 1.2E-14 2.6E-19 159.2 17.9 180 556-737 628-842 (1012)
144 KOG0303 Actin-binding protein 99.6 3.4E-14 7.3E-19 149.2 20.2 189 506-709 94-294 (472)
145 KOG1036 Mitotic spindle checkp 99.6 1E-13 2.2E-18 142.1 23.0 181 506-710 65-263 (323)
146 KOG0307 Vesicle coat complex C 99.6 3.3E-15 7.2E-20 174.2 11.7 233 480-737 65-325 (1049)
147 KOG2445 Nuclear pore complex c 99.6 7.6E-14 1.7E-18 142.7 20.0 187 552-739 10-256 (361)
148 KOG4378 Nuclear protein COP1 [ 99.6 1.8E-14 4E-19 154.5 16.1 182 558-740 82-281 (673)
149 KOG1034 Transcriptional repres 99.6 1.4E-14 3E-19 149.2 14.1 191 545-738 125-382 (385)
150 KOG1539 WD repeat protein [Gen 99.6 4.1E-14 9E-19 160.0 19.0 190 502-710 456-649 (910)
151 COG2319 FOG: WD40 repeat [Gene 99.6 1.1E-12 2.4E-17 140.9 29.5 215 506-739 77-314 (466)
152 KOG2048 WD40 repeat protein [G 99.6 1.6E-13 3.4E-18 152.6 23.1 204 507-736 81-316 (691)
153 KOG1408 WD40 repeat protein [F 99.6 1.9E-14 4.2E-19 159.5 15.1 188 502-710 467-714 (1080)
154 KOG4328 WD40 protein [Function 99.6 6.7E-14 1.5E-18 149.5 17.8 214 507-738 248-494 (498)
155 KOG0649 WD40 repeat protein [G 99.6 4.1E-13 8.9E-18 133.4 22.0 221 502-737 18-272 (325)
156 KOG2106 Uncharacterized conser 99.6 4.1E-13 9E-18 144.7 23.7 201 509-738 260-520 (626)
157 KOG1007 WD repeat protein TSSC 99.6 7.2E-14 1.6E-18 141.7 16.9 161 481-671 125-289 (370)
158 KOG1063 RNA polymerase II elon 99.6 2.5E-14 5.5E-19 158.9 14.8 193 546-739 516-763 (764)
159 KOG1310 WD40 repeat protein [G 99.6 4.8E-15 1E-19 160.5 8.8 128 546-673 41-180 (758)
160 KOG1445 Tumor-specific antigen 99.6 2.3E-14 4.9E-19 157.1 14.0 192 507-710 641-845 (1012)
161 KOG1539 WD repeat protein [Gen 99.6 1.7E-13 3.7E-18 155.1 20.6 226 501-742 407-651 (910)
162 KOG1009 Chromatin assembly com 99.6 8.3E-14 1.8E-18 147.0 16.7 158 507-676 27-200 (434)
163 KOG1188 WD40 repeat protein [G 99.6 7.7E-14 1.7E-18 144.5 15.9 148 506-672 40-197 (376)
164 KOG0307 Vesicle coat complex C 99.6 1.5E-14 3.3E-19 168.8 11.9 220 473-709 81-327 (1049)
165 KOG2919 Guanine nucleotide-bin 99.5 7.5E-13 1.6E-17 136.2 21.6 234 485-740 55-328 (406)
166 KOG4594 Sequence-specific sing 99.5 4.1E-15 8.8E-20 149.5 4.5 77 4-81 12-92 (354)
167 KOG0650 WD40 repeat nucleolar 99.5 1.2E-13 2.6E-18 151.3 15.6 190 542-738 387-679 (733)
168 KOG1063 RNA polymerase II elon 99.5 2.9E-13 6.3E-18 150.6 18.2 249 474-739 281-648 (764)
169 COG2319 FOG: WD40 repeat [Gene 99.5 9.9E-12 2.1E-16 133.4 27.4 193 545-740 145-360 (466)
170 KOG0290 Conserved WD40 repeat- 99.5 1.7E-12 3.6E-17 132.0 19.2 185 552-739 93-318 (364)
171 KOG0644 Uncharacterized conser 99.5 1.3E-14 2.8E-19 163.4 4.4 120 546-671 181-300 (1113)
172 KOG2919 Guanine nucleotide-bin 99.5 8.2E-13 1.8E-17 135.9 17.1 185 554-739 206-404 (406)
173 KOG1538 Uncharacterized conser 99.5 4E-12 8.7E-17 140.4 22.8 223 478-737 11-291 (1081)
174 KOG0649 WD40 repeat protein [G 99.5 5.7E-12 1.2E-16 125.4 21.1 222 505-738 71-315 (325)
175 KOG0650 WD40 repeat nucleolar 99.5 1.4E-12 2.9E-17 143.2 16.6 187 548-737 514-733 (733)
176 KOG0290 Conserved WD40 repeat- 99.4 2.1E-12 4.6E-17 131.3 15.7 172 479-672 96-319 (364)
177 KOG0642 Cell-cycle nuclear pro 99.4 7E-13 1.5E-17 145.0 12.5 130 545-675 284-430 (577)
178 KOG2106 Uncharacterized conser 99.4 1.5E-11 3.2E-16 132.9 21.5 211 503-738 377-625 (626)
179 KOG2394 WD40 protein DMR-N9 [G 99.4 2.4E-12 5.3E-17 139.9 15.6 154 480-650 220-384 (636)
180 KOG1524 WD40 repeat-containing 99.4 2.7E-12 5.8E-17 139.2 15.7 202 507-735 76-282 (737)
181 KOG0644 Uncharacterized conser 99.4 2.4E-13 5.1E-18 153.4 7.6 178 505-705 201-464 (1113)
182 KOG1517 Guanine nucleotide bin 99.4 7.3E-12 1.6E-16 144.7 19.5 224 506-739 1123-1381(1387)
183 KOG1009 Chromatin assembly com 99.4 2.9E-12 6.4E-17 135.4 14.0 148 556-704 14-190 (434)
184 KOG1523 Actin-related protein 99.4 1.4E-11 3.1E-16 127.0 18.3 198 480-709 11-236 (361)
185 KOG2055 WD40 repeat protein [G 99.4 1.7E-11 3.6E-16 131.5 18.8 187 555-742 213-420 (514)
186 KOG1587 Cytoplasmic dynein int 99.4 1.8E-11 4E-16 139.6 18.9 209 474-709 237-516 (555)
187 KOG1034 Transcriptional repres 99.4 1.3E-11 2.8E-16 127.5 15.6 157 551-709 34-211 (385)
188 PRK01742 tolB translocation pr 99.3 4.4E-11 9.5E-16 135.2 20.9 183 549-737 197-399 (429)
189 PRK11028 6-phosphogluconolacto 99.3 5.3E-10 1.2E-14 121.6 28.6 180 557-737 81-302 (330)
190 KOG0771 Prolactin regulatory e 99.3 9.8E-12 2.1E-16 132.3 12.6 174 559-736 148-351 (398)
191 PF08662 eIF2A: Eukaryotic tra 99.3 1.8E-10 4E-15 116.0 20.7 119 555-680 59-187 (194)
192 KOG1310 WD40 repeat protein [G 99.3 1.4E-11 3.1E-16 133.9 13.4 162 476-671 47-231 (758)
193 KOG4227 WD40 repeat protein [G 99.3 8.1E-11 1.7E-15 123.6 18.2 155 506-673 68-227 (609)
194 KOG0771 Prolactin regulatory e 99.3 2.1E-11 4.6E-16 129.8 13.9 190 483-708 148-353 (398)
195 PRK11028 6-phosphogluconolacto 99.3 5.8E-10 1.3E-14 121.4 25.5 210 509-737 5-256 (330)
196 KOG2110 Uncharacterized conser 99.3 1.9E-09 4.1E-14 113.4 26.6 145 556-705 88-244 (391)
197 KOG1240 Protein kinase contain 99.3 7.9E-10 1.7E-14 130.1 25.3 195 503-709 1058-1334(1431)
198 PF08662 eIF2A: Eukaryotic tra 99.3 4.3E-10 9.3E-15 113.3 20.1 151 559-713 9-183 (194)
199 KOG1188 WD40 repeat protein [G 99.3 9.1E-11 2E-15 122.0 15.2 170 568-739 41-242 (376)
200 KOG1538 Uncharacterized conser 99.2 4E-11 8.7E-16 132.6 12.5 174 557-736 14-208 (1081)
201 KOG4227 WD40 repeat protein [G 99.2 8.2E-11 1.8E-15 123.5 13.8 125 548-674 49-182 (609)
202 KOG1517 Guanine nucleotide bin 99.2 5.3E-10 1.1E-14 129.6 21.4 220 502-738 1072-1332(1387)
203 KOG1587 Cytoplasmic dynein int 99.2 5.8E-10 1.3E-14 127.4 21.5 182 555-738 242-471 (555)
204 KOG0322 G-protein beta subunit 99.2 4.5E-11 9.7E-16 120.4 10.3 153 507-670 166-322 (323)
205 KOG1963 WD40 repeat protein [G 99.2 1.7E-09 3.7E-14 124.2 23.2 217 503-736 214-484 (792)
206 PRK01742 tolB translocation pr 99.2 1.3E-09 2.9E-14 123.2 21.0 144 558-707 250-399 (429)
207 KOG1523 Actin-related protein 99.2 1.3E-09 2.9E-14 112.6 18.2 184 554-738 9-235 (361)
208 KOG0974 WD-repeat protein WDR6 99.2 4.9E-10 1.1E-14 130.5 16.2 143 506-672 145-289 (967)
209 KOG3881 Uncharacterized conser 99.2 2.5E-09 5.5E-14 113.1 20.1 193 502-711 111-322 (412)
210 KOG1963 WD40 repeat protein [G 99.1 2.7E-09 5.8E-14 122.6 21.5 209 507-737 29-373 (792)
211 KOG1524 WD40 repeat-containing 99.1 8.4E-10 1.8E-14 120.1 16.5 178 480-705 105-282 (737)
212 KOG1240 Protein kinase contain 99.1 1.8E-09 3.9E-14 127.2 18.6 168 545-712 1038-1228(1431)
213 KOG2139 WD40 repeat protein [G 99.1 1E-08 2.2E-13 107.6 21.8 200 479-702 140-368 (445)
214 KOG0322 G-protein beta subunit 99.1 1.2E-09 2.6E-14 110.3 14.3 154 553-707 148-321 (323)
215 KOG0974 WD-repeat protein WDR6 99.1 1.3E-09 2.8E-14 127.1 15.9 185 506-709 99-288 (967)
216 KOG2110 Uncharacterized conser 99.1 3.8E-09 8.3E-14 111.1 17.7 118 553-672 127-249 (391)
217 PRK05137 tolB translocation pr 99.1 2.6E-08 5.7E-13 112.8 26.2 157 549-708 195-365 (435)
218 PRK02889 tolB translocation pr 99.1 1.3E-08 2.7E-13 115.2 23.5 158 550-708 190-359 (427)
219 PRK04922 tolB translocation pr 99.1 2.1E-08 4.5E-13 113.6 24.2 157 549-708 197-367 (433)
220 KOG1334 WD40 repeat protein [G 99.0 9.2E-10 2E-14 119.0 11.3 194 546-739 133-424 (559)
221 KOG1272 WD40-repeat-containing 99.0 6.5E-10 1.4E-14 119.5 9.8 160 544-708 199-361 (545)
222 KOG1354 Serine/threonine prote 99.0 1E-08 2.2E-13 107.0 17.9 231 476-737 22-357 (433)
223 KOG1064 RAVE (regulator of V-A 99.0 1.1E-09 2.3E-14 132.6 11.6 180 503-710 2217-2399(2439)
224 KOG2394 WD40 protein DMR-N9 [G 99.0 1.8E-09 3.9E-14 117.9 11.9 132 556-689 220-384 (636)
225 KOG0280 Uncharacterized conser 99.0 5.7E-08 1.2E-12 99.8 21.4 119 558-676 124-247 (339)
226 KOG3881 Uncharacterized conser 99.0 6E-09 1.3E-13 110.3 14.7 163 504-677 159-326 (412)
227 KOG1334 WD40 repeat protein [G 99.0 5.4E-09 1.2E-13 113.1 14.7 232 506-738 154-465 (559)
228 PRK02889 tolB translocation pr 99.0 2.7E-08 5.9E-13 112.5 21.3 144 555-701 239-392 (427)
229 KOG4497 Uncharacterized conser 99.0 5E-09 1.1E-13 108.6 12.6 114 560-676 13-127 (447)
230 PRK03629 tolB translocation pr 99.0 1.2E-07 2.5E-12 107.4 25.0 142 558-702 245-396 (429)
231 PRK03629 tolB translocation pr 99.0 1.1E-07 2.5E-12 107.5 24.9 184 551-737 194-404 (429)
232 KOG2139 WD40 repeat protein [G 98.9 1.6E-08 3.5E-13 106.1 15.2 148 556-706 99-265 (445)
233 TIGR02800 propeller_TolB tol-p 98.9 2E-07 4.2E-12 104.7 25.4 157 549-708 183-353 (417)
234 PRK05137 tolB translocation pr 98.9 1.3E-07 2.7E-12 107.3 23.8 146 551-700 241-397 (435)
235 KOG3914 WD repeat protein WDR4 98.9 9.6E-09 2.1E-13 109.3 13.4 163 503-681 71-233 (390)
236 KOG1409 Uncharacterized conser 98.9 2.6E-08 5.6E-13 104.0 16.3 151 507-674 81-273 (404)
237 KOG1272 WD40-repeat-containing 98.9 1.9E-09 4.1E-14 116.0 7.8 177 558-742 132-326 (545)
238 PRK04922 tolB translocation pr 98.9 8.5E-08 1.8E-12 108.7 21.5 143 555-700 247-399 (433)
239 KOG2111 Uncharacterized conser 98.9 4.6E-07 1E-11 94.1 24.4 149 554-706 93-253 (346)
240 PRK00178 tolB translocation pr 98.9 6.4E-07 1.4E-11 101.3 26.0 148 549-699 192-350 (430)
241 KOG2321 WD40 repeat protein [G 98.9 4.6E-08 1E-12 107.8 15.7 157 548-705 168-339 (703)
242 KOG4190 Uncharacterized conser 98.8 4.5E-09 9.7E-14 114.5 5.8 163 547-711 727-908 (1034)
243 KOG1354 Serine/threonine prote 98.8 8.1E-08 1.8E-12 100.3 13.5 153 552-707 161-357 (433)
244 KOG4714 Nucleoporin [Nuclear s 98.8 2.9E-08 6.3E-13 100.3 10.0 151 578-738 160-317 (319)
245 TIGR02800 propeller_TolB tol-p 98.8 9.3E-07 2E-11 99.2 23.0 145 553-701 231-386 (417)
246 KOG4547 WD40 repeat-containing 98.8 1.3E-06 2.8E-11 97.3 23.1 137 566-706 69-217 (541)
247 KOG0280 Uncharacterized conser 98.7 9.8E-08 2.1E-12 98.0 13.0 142 545-688 155-306 (339)
248 KOG2111 Uncharacterized conser 98.7 8.5E-07 1.8E-11 92.2 19.9 82 548-629 174-258 (346)
249 PF10282 Lactonase: Lactonase, 98.7 2.5E-05 5.4E-10 85.9 33.1 194 544-737 75-320 (345)
250 PF02239 Cytochrom_D1: Cytochr 98.7 2.4E-06 5.2E-11 94.6 24.7 178 509-707 9-200 (369)
251 PF02239 Cytochrom_D1: Cytochr 98.7 9.3E-06 2E-10 90.0 28.8 155 506-680 48-211 (369)
252 PRK04792 tolB translocation pr 98.7 1.4E-06 3E-11 99.2 22.6 153 550-705 212-376 (448)
253 KOG2321 WD40 repeat protein [G 98.7 7.4E-07 1.6E-11 98.5 19.0 174 560-736 138-340 (703)
254 PRK01029 tolB translocation pr 98.7 1.4E-06 3E-11 98.5 22.2 144 556-699 231-390 (428)
255 KOG4547 WD40 repeat-containing 98.7 3.8E-07 8.2E-12 101.4 16.8 146 507-672 71-221 (541)
256 PRK00178 tolB translocation pr 98.7 2.6E-06 5.5E-11 96.4 22.7 142 556-700 243-394 (430)
257 KOG0309 Conserved WD40 repeat- 98.7 8.8E-08 1.9E-12 107.9 10.3 127 547-673 106-234 (1081)
258 PLN02919 haloacid dehalogenase 98.6 3.4E-05 7.4E-10 96.2 30.8 180 556-738 624-887 (1057)
259 PRK04792 tolB translocation pr 98.6 5.2E-06 1.1E-10 94.6 21.4 140 558-700 264-413 (448)
260 COG5170 CDC55 Serine/threonine 98.5 1.1E-06 2.4E-11 90.8 13.3 215 507-737 39-365 (460)
261 PF08513 LisH: LisH; InterPro 98.5 1E-07 2.2E-12 64.0 3.5 27 10-36 1-27 (27)
262 KOG4497 Uncharacterized conser 98.5 1.2E-06 2.7E-11 91.1 12.6 178 556-737 49-238 (447)
263 PRK01029 tolB translocation pr 98.5 5.9E-06 1.3E-10 93.5 19.4 122 556-679 281-411 (428)
264 KOG4190 Uncharacterized conser 98.5 1.7E-06 3.6E-11 94.9 13.0 217 506-739 747-988 (1034)
265 KOG2695 WD40 repeat protein [G 98.4 3.1E-07 6.7E-12 96.2 6.8 127 554-682 251-387 (425)
266 KOG2695 WD40 repeat protein [G 98.4 3.8E-07 8.2E-12 95.5 7.1 145 560-709 216-376 (425)
267 PF10282 Lactonase: Lactonase, 98.4 0.0003 6.4E-09 77.4 30.2 153 556-708 144-321 (345)
268 KOG4532 WD40-like repeat conta 98.4 5.6E-05 1.2E-09 77.2 21.4 125 558-682 161-293 (344)
269 KOG1064 RAVE (regulator of V-A 98.4 1.2E-06 2.6E-11 107.1 10.6 183 551-739 2204-2398(2439)
270 COG2706 3-carboxymuconate cycl 98.4 0.00033 7.1E-09 74.6 27.4 141 558-698 91-262 (346)
271 PF00400 WD40: WD domain, G-be 98.4 1.1E-06 2.4E-11 64.0 6.4 39 587-625 1-39 (39)
272 PF00400 WD40: WD domain, G-be 98.4 1.4E-06 3.1E-11 63.5 6.8 38 546-583 2-39 (39)
273 KOG2315 Predicted translation 98.4 1.7E-05 3.6E-10 88.1 17.9 112 554-671 269-390 (566)
274 KOG2315 Predicted translation 98.3 4.1E-05 8.9E-10 85.1 20.6 132 578-714 252-395 (566)
275 KOG2041 WD40 repeat protein [G 98.3 1E-05 2.3E-10 91.3 15.7 218 507-731 27-280 (1189)
276 PRK04043 tolB translocation pr 98.3 0.00011 2.4E-09 82.9 24.1 141 557-700 189-339 (419)
277 KOG1409 Uncharacterized conser 98.3 2.8E-05 6E-10 81.8 17.5 191 504-712 34-273 (404)
278 KOG0309 Conserved WD40 repeat- 98.3 1.5E-06 3.2E-11 98.3 8.3 153 558-711 70-234 (1081)
279 PLN02919 haloacid dehalogenase 98.3 0.00015 3.2E-09 90.6 26.5 151 558-710 685-889 (1057)
280 COG5170 CDC55 Serine/threonine 98.3 2.5E-06 5.5E-11 88.2 8.4 151 552-705 169-363 (460)
281 TIGR03300 assembly_YfgL outer 98.2 0.00036 7.8E-09 77.4 25.7 208 506-738 105-337 (377)
282 KOG3914 WD repeat protein WDR4 98.2 7.3E-06 1.6E-10 87.7 11.1 147 558-708 65-222 (390)
283 KOG2066 Vacuolar assembly/sort 98.2 3E-05 6.5E-10 89.3 16.7 143 505-681 48-197 (846)
284 KOG0882 Cyclophilin-related pe 98.2 4.3E-06 9.4E-11 90.3 9.0 182 505-705 19-227 (558)
285 COG4946 Uncharacterized protei 98.2 7.5E-05 1.6E-09 81.4 18.3 143 553-698 357-507 (668)
286 PRK04043 tolB translocation pr 98.2 0.00019 4.1E-09 81.1 22.5 142 554-700 231-388 (419)
287 KOG4714 Nucleoporin [Nuclear s 98.2 7.1E-06 1.5E-10 83.4 8.7 171 546-718 80-263 (319)
288 COG4946 Uncharacterized protei 98.1 0.00014 3.1E-09 79.3 18.5 108 547-656 393-504 (668)
289 PF13360 PQQ_2: PQQ-like domai 98.1 0.00084 1.8E-08 68.9 23.6 170 566-739 35-230 (238)
290 TIGR03300 assembly_YfgL outer 98.1 0.0011 2.5E-08 73.4 26.2 205 506-738 65-296 (377)
291 KOG1275 PAB-dependent poly(A) 98.1 3.2E-05 7E-10 89.8 13.4 148 555-708 177-341 (1118)
292 KOG1912 WD40 repeat protein [G 98.1 9.7E-05 2.1E-09 84.6 16.7 121 558-681 18-153 (1062)
293 PF11768 DUF3312: Protein of u 98.1 0.0004 8.7E-09 78.3 21.4 126 544-674 195-332 (545)
294 PF08450 SGL: SMP-30/Gluconola 98.1 0.006 1.3E-07 63.5 29.2 173 558-735 42-242 (246)
295 PF11768 DUF3312: Protein of u 98.0 9.1E-05 2E-09 83.4 14.9 76 553-630 257-332 (545)
296 KOG1275 PAB-dependent poly(A) 98.0 4.1E-05 8.9E-10 89.0 11.6 141 506-669 187-340 (1118)
297 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.0027 5.9E-08 69.6 25.1 152 558-710 107-331 (352)
298 COG2706 3-carboxymuconate cycl 97.9 0.0012 2.6E-08 70.5 21.0 156 553-708 37-220 (346)
299 PF15492 Nbas_N: Neuroblastoma 97.9 0.006 1.3E-07 63.5 24.7 178 558-740 46-260 (282)
300 KOG3617 WD40 and TPR repeat-co 97.9 0.00045 9.7E-09 79.8 17.2 70 558-627 62-131 (1416)
301 KOG1645 RING-finger-containing 97.9 0.00013 2.7E-09 78.4 11.9 94 579-674 175-269 (463)
302 KOG1645 RING-finger-containing 97.8 0.00019 4.2E-09 77.0 12.9 122 546-671 184-315 (463)
303 PF07433 DUF1513: Protein of u 97.8 0.0029 6.2E-08 67.5 21.0 166 531-701 76-278 (305)
304 PF13360 PQQ_2: PQQ-like domai 97.8 0.0092 2E-07 61.1 24.2 145 566-715 75-236 (238)
305 KOG2041 WD40 repeat protein [G 97.8 0.00013 2.9E-09 82.6 10.6 116 555-671 14-145 (1189)
306 TIGR02658 TTQ_MADH_Hv methylam 97.7 0.0033 7.1E-08 69.0 21.0 103 577-682 27-147 (352)
307 KOG2314 Translation initiation 97.7 0.0019 4.1E-08 72.0 18.6 200 534-735 284-563 (698)
308 KOG1912 WD40 repeat protein [G 97.7 0.0021 4.6E-08 74.0 19.2 206 478-707 54-302 (1062)
309 PF04762 IKI3: IKI3 family; I 97.6 0.011 2.3E-07 73.1 25.3 178 558-737 259-454 (928)
310 KOG1832 HIV-1 Vpr-binding prot 97.6 6.1E-05 1.3E-09 87.1 5.0 149 544-697 1090-1248(1516)
311 COG5354 Uncharacterized protei 97.6 0.011 2.4E-07 65.7 21.9 157 556-715 174-354 (561)
312 PF08450 SGL: SMP-30/Gluconola 97.6 0.042 9.2E-07 57.1 25.6 142 559-707 3-162 (246)
313 KOG2114 Vacuolar assembly/sort 97.5 0.012 2.7E-07 68.8 21.7 189 507-718 36-252 (933)
314 PF04762 IKI3: IKI3 family; I 97.5 0.014 2.9E-07 72.2 23.7 183 553-739 73-333 (928)
315 COG5354 Uncharacterized protei 97.4 0.018 3.9E-07 64.0 21.4 172 532-711 202-397 (561)
316 PRK11138 outer membrane biogen 97.4 0.031 6.7E-07 62.6 23.7 170 567-738 160-352 (394)
317 PF07433 DUF1513: Protein of u 97.4 0.026 5.6E-07 60.3 21.2 140 558-697 7-180 (305)
318 KOG4532 WD40-like repeat conta 97.4 0.0019 4.2E-08 66.3 12.0 136 608-743 83-237 (344)
319 KOG4640 Anaphase-promoting com 97.3 0.00083 1.8E-08 76.0 9.8 94 556-650 21-115 (665)
320 KOG1920 IkappaB kinase complex 97.3 0.02 4.4E-07 69.4 21.2 113 559-674 199-325 (1265)
321 KOG1008 Uncharacterized conser 97.3 0.00011 2.4E-09 82.8 2.3 182 555-739 56-275 (783)
322 PRK11138 outer membrane biogen 97.3 0.056 1.2E-06 60.5 24.0 165 568-738 206-393 (394)
323 KOG2066 Vacuolar assembly/sort 97.2 0.0037 8.1E-08 72.6 13.3 135 555-702 39-181 (846)
324 smart00320 WD40 WD40 repeats. 97.2 0.001 2.2E-08 45.6 5.8 39 587-625 2-40 (40)
325 PF15492 Nbas_N: Neuroblastoma 97.2 0.041 8.9E-07 57.5 19.5 109 481-617 45-167 (282)
326 smart00320 WD40 WD40 repeats. 97.2 0.00098 2.1E-08 45.7 5.5 38 546-583 3-40 (40)
327 KOG2314 Translation initiation 97.2 0.0026 5.6E-08 70.9 11.3 133 559-697 214-364 (698)
328 PF04053 Coatomer_WDAD: Coatom 97.1 0.011 2.4E-07 67.0 16.3 172 551-739 28-214 (443)
329 smart00667 LisH Lissencephaly 97.1 0.00076 1.6E-08 47.3 4.0 31 9-39 3-33 (34)
330 KOG0882 Cyclophilin-related pe 97.1 0.017 3.6E-07 63.3 15.7 105 574-679 119-239 (558)
331 PF08596 Lgl_C: Lethal giant l 97.0 0.54 1.2E-05 52.7 28.1 164 544-709 75-290 (395)
332 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.022 4.8E-07 51.7 13.7 102 558-667 2-110 (111)
333 PRK02888 nitrous-oxide reducta 97.0 0.026 5.7E-07 65.5 17.2 129 565-698 286-450 (635)
334 KOG1832 HIV-1 Vpr-binding prot 97.0 0.00058 1.3E-08 79.3 3.8 122 587-709 1091-1214(1516)
335 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.084 1.8E-06 54.5 18.3 113 567-683 23-135 (354)
336 KOG1920 IkappaB kinase complex 96.9 0.11 2.4E-06 63.3 22.1 181 555-739 68-322 (1265)
337 PRK02888 nitrous-oxide reducta 96.9 0.029 6.3E-07 65.1 16.4 91 618-709 295-404 (635)
338 KOG3617 WD40 and TPR repeat-co 96.8 0.0046 1E-07 71.8 9.6 109 559-671 19-131 (1416)
339 KOG1008 Uncharacterized conser 96.8 0.0006 1.3E-08 77.1 1.9 114 556-671 155-275 (783)
340 KOG2114 Vacuolar assembly/sort 96.7 0.16 3.4E-06 60.0 21.0 129 554-684 124-257 (933)
341 PF06977 SdiA-regulated: SdiA- 96.7 0.41 9E-06 50.1 22.2 192 549-742 15-244 (248)
342 KOG3621 WD40 repeat-containing 96.7 0.013 2.8E-07 67.5 11.6 136 505-660 44-188 (726)
343 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.43 9.4E-06 49.4 21.2 144 504-671 21-165 (354)
344 COG3391 Uncharacterized conser 96.6 0.72 1.6E-05 51.5 24.7 152 557-710 117-284 (381)
345 PF06977 SdiA-regulated: SdiA- 96.5 0.87 1.9E-05 47.7 23.3 124 556-680 65-209 (248)
346 COG0823 TolB Periplasmic compo 96.5 0.063 1.4E-06 60.7 16.0 144 552-699 189-345 (425)
347 PF04841 Vps16_N: Vps16, N-ter 96.5 0.14 3.1E-06 57.7 18.7 180 556-739 81-280 (410)
348 PF08553 VID27: VID27 cytoplas 96.4 0.068 1.5E-06 64.2 16.0 136 566-705 492-644 (794)
349 KOG3621 WD40 repeat-containing 96.4 0.021 4.6E-07 65.8 11.2 115 557-672 35-155 (726)
350 PF08553 VID27: VID27 cytoplas 96.3 0.079 1.7E-06 63.6 16.0 99 568-670 543-646 (794)
351 cd00216 PQQ_DH Dehydrogenases 96.3 1.1 2.3E-05 52.0 25.0 105 575-680 173-328 (488)
352 PF02897 Peptidase_S9_N: Proly 96.2 1.3 2.9E-05 49.6 24.3 115 558-673 126-262 (414)
353 COG0823 TolB Periplasmic compo 96.1 0.13 2.7E-06 58.3 15.2 139 559-700 241-390 (425)
354 PF04053 Coatomer_WDAD: Coatom 96.0 0.54 1.2E-05 53.5 19.9 104 558-673 71-175 (443)
355 KOG4640 Anaphase-promoting com 96.0 0.026 5.7E-07 64.3 9.0 79 597-678 20-99 (665)
356 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.26 5.7E-06 44.8 13.6 66 600-671 2-71 (111)
357 PF03178 CPSF_A: CPSF A subuni 95.8 0.69 1.5E-05 50.2 19.4 157 578-738 3-201 (321)
358 cd00216 PQQ_DH Dehydrogenases 95.8 0.61 1.3E-05 53.9 19.5 110 567-681 61-193 (488)
359 COG3391 Uncharacterized conser 95.7 1.1 2.4E-05 50.0 20.5 145 558-705 76-235 (381)
360 COG3386 Gluconolactonase [Carb 95.6 3.4 7.4E-05 44.8 23.3 149 558-710 68-244 (307)
361 COG3490 Uncharacterized protei 95.5 0.37 7.9E-06 50.6 14.5 161 544-706 150-345 (366)
362 PF03178 CPSF_A: CPSF A subuni 95.5 0.98 2.1E-05 49.0 19.0 121 544-671 78-202 (321)
363 PRK13616 lipoprotein LpqB; Pro 95.4 0.75 1.6E-05 54.3 18.8 141 556-706 350-522 (591)
364 KOG1916 Nuclear protein, conta 95.4 0.0042 9E-08 72.8 -0.1 117 558-676 183-328 (1283)
365 PF08596 Lgl_C: Lethal giant l 95.2 3.3 7.2E-05 46.5 22.3 180 507-698 98-325 (395)
366 PF15390 DUF4613: Domain of un 95.2 0.17 3.7E-06 57.8 11.7 117 556-672 57-187 (671)
367 PF12234 Rav1p_C: RAVE protein 95.1 0.86 1.9E-05 53.6 17.8 124 544-671 18-156 (631)
368 KOG2395 Protein involved in va 95.1 0.21 4.5E-06 56.3 11.7 132 566-701 344-493 (644)
369 KOG2079 Vacuolar assembly/sort 95.0 0.075 1.6E-06 64.0 8.5 101 566-670 98-202 (1206)
370 KOG2395 Protein involved in va 94.9 0.23 5.1E-06 55.9 11.7 110 558-671 378-500 (644)
371 KOG2444 WD40 repeat protein [G 94.6 0.1 2.2E-06 53.0 7.2 105 566-672 69-178 (238)
372 COG3386 Gluconolactonase [Carb 94.5 1.2 2.7E-05 48.2 16.0 124 557-682 112-253 (307)
373 PF10168 Nup88: Nuclear pore c 94.4 2.9 6.3E-05 50.5 20.3 81 556-636 85-188 (717)
374 KOG4441 Proteins containing BT 94.4 1.1 2.4E-05 52.8 16.5 137 560-701 327-486 (571)
375 COG3204 Uncharacterized protei 94.4 8.4 0.00018 41.0 20.9 120 551-671 81-210 (316)
376 KOG2079 Vacuolar assembly/sort 94.3 0.4 8.6E-06 58.1 12.4 71 554-626 129-202 (1206)
377 PF12894 Apc4_WD40: Anaphase-p 94.0 0.15 3.3E-06 39.1 5.4 32 556-588 12-43 (47)
378 PF00930 DPPIV_N: Dipeptidyl p 93.9 0.13 2.8E-06 56.8 7.1 105 564-670 1-130 (353)
379 PRK13616 lipoprotein LpqB; Pro 93.9 3 6.6E-05 49.3 18.8 107 558-670 399-524 (591)
380 KOG2444 WD40 repeat protein [G 93.9 0.2 4.3E-06 51.0 7.6 105 506-628 70-178 (238)
381 PF00780 CNH: CNH domain; Int 93.6 7.5 0.00016 40.8 19.8 135 566-705 6-162 (275)
382 TIGR02604 Piru_Ver_Nterm putat 93.5 3.3 7.2E-05 46.0 17.5 140 557-698 15-202 (367)
383 PF00780 CNH: CNH domain; Int 93.5 11 0.00024 39.4 24.5 116 558-679 38-173 (275)
384 PF10647 Gmad1: Lipoprotein Lp 93.2 9.6 0.00021 40.0 19.6 143 557-701 25-187 (253)
385 KOG3630 Nuclear pore complex, 92.8 0.76 1.7E-05 56.1 11.3 112 558-671 103-228 (1405)
386 COG3490 Uncharacterized protei 92.5 2.2 4.8E-05 45.0 12.8 55 562-616 120-180 (366)
387 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.5 12 0.00027 43.7 20.9 109 567-680 69-198 (527)
388 PRK10115 protease 2; Provision 92.5 22 0.00048 43.0 23.5 111 558-670 129-254 (686)
389 KOG1916 Nuclear protein, conta 92.4 0.041 9E-07 64.8 0.4 128 550-682 127-281 (1283)
390 PF05694 SBP56: 56kDa selenium 92.4 5 0.00011 45.0 16.3 117 557-673 182-344 (461)
391 PF06433 Me-amine-dh_H: Methyl 92.2 7.6 0.00016 42.4 17.1 124 577-703 17-159 (342)
392 PHA02713 hypothetical protein; 92.1 4 8.7E-05 48.0 16.4 63 566-630 303-378 (557)
393 PF00930 DPPIV_N: Dipeptidyl p 92.0 2.6 5.5E-05 46.5 13.9 145 554-698 182-346 (353)
394 PF14583 Pectate_lyase22: Olig 92.0 15 0.00032 40.9 19.3 147 506-672 48-223 (386)
395 PF12894 Apc4_WD40: Anaphase-p 91.9 0.46 9.9E-06 36.4 5.4 31 597-627 11-41 (47)
396 TIGR03074 PQQ_membr_DH membran 91.7 33 0.00071 42.0 23.7 111 567-680 194-353 (764)
397 PF14655 RAB3GAP2_N: Rab3 GTPa 91.6 2.2 4.7E-05 48.1 12.7 92 590-682 300-409 (415)
398 PF04841 Vps16_N: Vps16, N-ter 91.3 30 0.00064 39.1 22.1 42 640-682 216-257 (410)
399 KOG4441 Proteins containing BT 90.8 5.1 0.00011 47.3 15.4 135 566-705 380-537 (571)
400 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.6 26 0.00057 41.0 20.9 140 567-708 120-332 (527)
401 PHA02713 hypothetical protein; 90.4 2.2 4.7E-05 50.3 11.8 108 566-678 398-540 (557)
402 PF14870 PSII_BNR: Photosynthe 89.5 8.9 0.00019 41.4 14.6 117 552-675 141-264 (302)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 89.3 4 8.6E-05 46.0 12.2 90 542-631 294-402 (415)
404 PF08728 CRT10: CRT10; InterP 89.2 11 0.00025 45.0 16.3 112 558-670 103-245 (717)
405 PF06433 Me-amine-dh_H: Methyl 89.1 28 0.00061 38.1 18.0 119 562-682 190-331 (342)
406 PF14761 HPS3_N: Hermansky-Pud 89.0 23 0.00051 36.1 16.3 103 568-673 29-165 (215)
407 TIGR02604 Piru_Ver_Nterm putat 88.3 14 0.00031 40.9 15.9 99 555-658 71-200 (367)
408 PRK13684 Ycf48-like protein; P 88.1 25 0.00054 38.5 17.4 113 555-674 172-290 (334)
409 KOG1897 Damage-specific DNA bi 87.1 53 0.0011 40.5 19.9 125 578-705 471-609 (1096)
410 COG4257 Vgb Streptogramin lyas 87.0 44 0.00095 35.5 16.9 140 558-705 64-214 (353)
411 PRK10350 hypothetical protein; 87.0 2 4.3E-05 39.4 6.5 16 68-83 21-37 (145)
412 PF07569 Hira: TUP1-like enhan 86.7 4.1 9E-05 41.9 9.7 73 605-679 18-103 (219)
413 PF10313 DUF2415: Uncharacteri 86.6 2.5 5.3E-05 31.8 5.7 31 556-586 1-34 (43)
414 PF08801 Nucleoporin_N: Nup133 86.3 23 0.0005 40.0 16.4 165 558-739 29-219 (422)
415 PF14781 BBS2_N: Ciliary BBSom 85.8 28 0.0006 32.9 13.6 115 560-679 3-133 (136)
416 PRK13684 Ycf48-like protein; P 85.6 60 0.0013 35.5 20.7 138 597-740 172-332 (334)
417 PF14727 PHTB1_N: PTHB1 N-term 85.3 73 0.0016 36.1 27.4 58 568-626 146-203 (418)
418 COG3204 Uncharacterized protei 85.3 57 0.0012 34.9 19.8 122 558-680 131-271 (316)
419 TIGR03548 mutarot_permut cycli 85.2 58 0.0012 35.2 18.3 106 566-675 72-198 (323)
420 KOG2377 Uncharacterized conser 85.1 15 0.00033 41.3 13.2 117 554-672 65-186 (657)
421 PF05096 Glu_cyclase_2: Glutam 85.1 56 0.0012 34.6 19.4 117 558-681 47-167 (264)
422 TIGR03074 PQQ_membr_DH membran 84.6 1.1E+02 0.0024 37.6 24.1 65 566-631 259-348 (764)
423 PHA03098 kelch-like protein; P 84.5 20 0.00044 41.7 15.3 106 566-676 342-469 (534)
424 PF10313 DUF2415: Uncharacteri 84.3 3.4 7.5E-05 31.0 5.5 32 641-672 1-34 (43)
425 PF02333 Phytase: Phytase; In 83.9 67 0.0015 35.9 17.9 137 566-705 67-233 (381)
426 PF10214 Rrn6: RNA polymerase 83.8 45 0.00097 41.0 18.3 120 553-675 77-236 (765)
427 PF10214 Rrn6: RNA polymerase 83.8 61 0.0013 39.8 19.4 125 546-672 133-277 (765)
428 PF07995 GSDH: Glucose / Sorbo 83.1 22 0.00049 38.8 13.9 102 558-662 4-134 (331)
429 COG5276 Uncharacterized conser 83.0 72 0.0016 34.3 22.4 175 507-705 97-281 (370)
430 PF11715 Nup160: Nucleoporin N 82.8 6.1 0.00013 46.3 10.0 74 607-680 156-257 (547)
431 PF12657 TFIIIC_delta: Transcr 82.8 5.7 0.00012 39.1 8.3 32 641-672 86-122 (173)
432 PF14583 Pectate_lyase22: Olig 82.6 27 0.00059 38.9 14.1 88 561-649 41-131 (386)
433 TIGR03118 PEPCTERM_chp_1 conse 82.4 77 0.0017 34.2 20.0 114 558-671 25-170 (336)
434 PF07569 Hira: TUP1-like enhan 82.3 7.4 0.00016 40.0 9.2 65 563-628 18-96 (219)
435 PF12234 Rav1p_C: RAVE protein 82.3 12 0.00027 44.3 12.0 71 553-625 70-154 (631)
436 PF15390 DUF4613: Domain of un 82.2 39 0.00085 39.4 15.3 154 556-719 20-196 (671)
437 PF10168 Nup88: Nuclear pore c 82.1 37 0.0008 41.2 16.2 75 598-673 85-181 (717)
438 KOG4499 Ca2+-binding protein R 82.0 18 0.00039 37.4 11.4 54 561-614 217-271 (310)
439 PRK10115 protease 2; Provision 81.8 65 0.0014 39.1 18.3 99 598-699 127-242 (686)
440 KOG4499 Ca2+-binding protein R 81.4 28 0.0006 36.1 12.4 102 559-661 161-275 (310)
441 PF05096 Glu_cyclase_2: Glutam 81.3 78 0.0017 33.5 17.3 104 572-681 105-213 (264)
442 KOG3630 Nuclear pore complex, 80.9 8.9 0.00019 47.4 10.2 107 600-706 103-225 (1405)
443 COG5167 VID27 Protein involved 80.7 53 0.0011 37.6 15.4 132 566-700 478-624 (776)
444 KOG2280 Vacuolar assembly/sort 80.5 41 0.00089 40.2 15.1 31 555-586 83-113 (829)
445 PHA03098 kelch-like protein; P 80.0 23 0.00051 41.2 13.5 105 566-675 389-515 (534)
446 PF14870 PSII_BNR: Photosynthe 79.8 96 0.0021 33.6 23.0 139 593-736 140-301 (302)
447 KOG4460 Nuclear pore complex, 79.7 13 0.00027 42.5 10.2 73 556-628 104-199 (741)
448 COG5167 VID27 Protein involved 79.1 23 0.0005 40.4 12.0 96 572-671 532-632 (776)
449 PHA02790 Kelch-like protein; P 79.0 90 0.0019 36.0 17.7 103 566-676 318-428 (480)
450 PF14781 BBS2_N: Ciliary BBSom 77.6 54 0.0012 31.0 12.3 74 601-676 2-86 (136)
451 PF05694 SBP56: 56kDa selenium 76.3 51 0.0011 37.3 13.8 63 598-660 312-393 (461)
452 PLN02153 epithiospecifier prot 76.1 1.2E+02 0.0027 32.9 17.3 64 566-631 137-229 (341)
453 COG1520 FOG: WD40-like repeat 76.1 1.3E+02 0.0028 33.2 22.1 110 566-680 111-226 (370)
454 TIGR03606 non_repeat_PQQ dehyd 75.5 90 0.0019 35.8 15.9 56 554-609 28-90 (454)
455 PHA02790 Kelch-like protein; P 74.2 60 0.0013 37.4 14.6 102 566-675 362-474 (480)
456 TIGR02276 beta_rpt_yvtn 40-res 73.0 9.2 0.0002 27.5 5.0 32 650-681 1-32 (42)
457 PF11715 Nup160: Nucleoporin N 73.0 23 0.0005 41.5 10.9 71 565-636 156-256 (547)
458 PF02897 Peptidase_S9_N: Proly 72.6 1.6E+02 0.0036 32.7 27.1 148 560-709 174-357 (414)
459 COG1520 FOG: WD40-like repeat 72.1 76 0.0016 35.0 14.3 111 566-681 68-181 (370)
460 TIGR03118 PEPCTERM_chp_1 conse 71.0 1.6E+02 0.0035 31.9 17.3 85 612-698 215-306 (336)
461 PF08728 CRT10: CRT10; InterP 70.9 12 0.00027 44.7 7.8 122 504-626 112-245 (717)
462 PF05935 Arylsulfotrans: Aryls 70.6 1.8E+02 0.0038 33.6 17.2 117 561-682 153-312 (477)
463 KOG1896 mRNA cleavage and poly 70.5 2E+02 0.0043 36.6 17.6 178 555-736 964-1210(1366)
464 PLN00033 photosystem II stabil 70.1 1.9E+02 0.0042 32.5 18.4 112 558-674 241-358 (398)
465 KOG1897 Damage-specific DNA bi 68.7 3.1E+02 0.0066 34.3 19.0 110 556-670 830-941 (1096)
466 PF07676 PD40: WD40-like Beta 68.6 18 0.0004 25.8 5.7 31 638-668 6-38 (39)
467 KOG1898 Splicing factor 3b, su 67.5 1.1E+02 0.0024 38.1 14.6 98 579-678 855-969 (1205)
468 TIGR02171 Fb_sc_TIGR02171 Fibr 67.2 33 0.0007 42.1 10.3 93 568-660 320-418 (912)
469 TIGR03032 conserved hypothetic 67.1 1E+02 0.0022 33.5 13.0 51 562-616 209-259 (335)
470 PF07250 Glyoxal_oxid_N: Glyox 67.1 44 0.00096 35.0 10.2 126 579-704 48-194 (243)
471 TIGR02276 beta_rpt_yvtn 40-res 66.3 26 0.00057 25.1 6.2 31 565-595 1-32 (42)
472 TIGR03548 mutarot_permut cycli 66.1 1.9E+02 0.0042 31.0 17.1 64 566-630 123-197 (323)
473 PF10395 Utp8: Utp8 family; I 65.8 3E+02 0.0065 33.1 22.0 125 555-681 129-269 (670)
474 PF12768 Rax2: Cortical protei 64.3 66 0.0014 34.5 11.1 94 577-672 16-124 (281)
475 PF14269 Arylsulfotran_2: Aryl 63.4 1.6E+02 0.0035 31.8 14.1 70 558-627 146-220 (299)
476 PF10647 Gmad1: Lipoprotein Lp 62.8 2E+02 0.0044 30.0 20.9 111 557-667 67-192 (253)
477 KOG1900 Nuclear pore complex, 61.7 26 0.00056 44.3 8.2 93 574-670 96-204 (1311)
478 COG3823 Glutamine cyclotransfe 61.3 1E+02 0.0022 31.6 10.9 104 566-674 55-161 (262)
479 COG5290 IkappaB kinase complex 61.2 95 0.0021 37.5 12.2 18 602-619 251-268 (1243)
480 KOG2659 LisH motif-containing 60.1 8.2 0.00018 39.6 3.2 31 11-41 28-58 (228)
481 TIGR03606 non_repeat_PQQ dehyd 59.7 2.2E+02 0.0048 32.7 14.9 57 596-652 28-90 (454)
482 KOG1900 Nuclear pore complex, 59.1 97 0.0021 39.5 12.4 72 597-672 178-273 (1311)
483 PRK14131 N-acetylneuraminic ac 59.0 2.9E+02 0.0062 30.6 17.1 23 566-588 84-117 (376)
484 PF13449 Phytase-like: Esteras 58.7 1.8E+02 0.0039 31.6 13.7 98 558-656 87-230 (326)
485 KOG0396 Uncharacterized conser 58.3 8.1 0.00018 42.1 2.9 33 8-40 114-146 (389)
486 PF01731 Arylesterase: Arylest 58.2 38 0.00083 29.5 6.6 50 619-672 36-85 (86)
487 PF07250 Glyoxal_oxid_N: Glyox 57.6 54 0.0012 34.3 8.8 116 562-681 73-207 (243)
488 smart00036 CNH Domain found in 54.5 2.1E+02 0.0046 30.8 13.2 59 566-627 12-73 (302)
489 PF14727 PHTB1_N: PTHB1 N-term 54.2 3.8E+02 0.0082 30.5 19.3 58 507-584 146-203 (418)
490 PF11635 Med16: Mediator compl 54.0 5E+02 0.011 32.0 17.7 184 509-704 65-345 (753)
491 PF07995 GSDH: Glucose / Sorbo 53.9 1.4E+02 0.003 32.7 11.8 60 599-660 3-71 (331)
492 KOG2247 WD40 repeat-containing 53.8 2.2 4.7E-05 48.0 -2.2 107 600-709 37-147 (615)
493 KOG0783 Uncharacterized conser 53.6 4.3E+02 0.0092 32.6 15.7 39 544-586 219-257 (1267)
494 KOG4369 RTK signaling protein 53.5 8.1 0.00018 47.6 2.2 11 159-169 1917-1927(2131)
495 PLN02153 epithiospecifier prot 53.1 2.3E+02 0.005 30.8 13.5 65 566-630 85-170 (341)
496 PF03088 Str_synth: Strictosid 52.9 1E+02 0.0022 27.1 8.4 69 601-671 1-87 (89)
497 TIGR03547 muta_rot_YjhT mutatr 52.6 3.4E+02 0.0073 29.4 16.4 178 506-701 64-332 (346)
498 KOG1520 Predicted alkaloid syn 50.6 1.7E+02 0.0037 32.5 11.5 136 560-697 69-236 (376)
499 TIGR03032 conserved hypothetic 50.5 3.1E+02 0.0066 30.0 13.1 133 558-694 154-313 (335)
500 TIGR03547 muta_rot_YjhT mutatr 50.1 3.7E+02 0.0079 29.2 20.2 211 508-736 21-327 (346)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=4e-32 Score=284.71 Aligned_cols=227 Identities=21% Similarity=0.272 Sum_probs=200.3
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004603 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.+...+..+.|+|.. .+.-+++++.|++|++|.. ....++..+++|..
T Consensus 215 gH~~~v~~~~fhP~~-------------~~~~lat~s~Dgtvklw~~-------------------~~e~~l~~l~gH~~ 262 (459)
T KOG0272|consen 215 GHTSRVGAAVFHPVD-------------SDLNLATASADGTVKLWKL-------------------SQETPLQDLEGHLA 262 (459)
T ss_pred ccccceeeEEEccCC-------------CccceeeeccCCceeeecc-------------------CCCcchhhhhcchh
Confidence 445566666777642 1357899999999999933 33367888999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
.|..++|+|+|++|+|+|.|.+-++||++++..+...+||+..|.+|+|+|||.+++||+.|..-||||++++++ +..+
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~-im~L 341 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC-IMFL 341 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE-EEEe
Confidence 999999999999999999999999999999998888899999999999999999999999999999999999775 9999
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeec-CCCEEEEEecCCeEEEEecc--
Q 004603 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIIL-KGCFILNSIFNCYLLLHRIF-- 709 (743)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~-~g~~l~sgs~Dg~I~vh~~~-- 709 (743)
.+|...|.+|+|+|+|. .|+||+.|++++|||++..+++..+.+|.. +.|+| .|++|++++.|+++++|...
T Consensus 342 ~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred cccccceeeEeECCCce-EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 99999999999999974 788999999999999999999999998854 77887 89999999999999998643
Q ss_pred ----------cceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 710 ----------LNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 710 ----------v~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
.+++++....++..|+|+++|.+|++|.
T Consensus 421 ~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 3566666677788999999999999996
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.2e-31 Score=281.03 Aligned_cols=229 Identities=24% Similarity=0.282 Sum_probs=202.5
Q ss_pred ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004603 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (743)
Q Consensus 475 ~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (743)
.+.+.++++.+.|+.|+ ..+++|||+|.+++|.... ...+.+|.+|
T Consensus 171 Q~gd~rPis~~~fS~ds---------------~~laT~swsG~~kvW~~~~-------------------~~~~~~l~gH 216 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDS---------------KHLATGSWSGLVKVWSVPQ-------------------CNLLQTLRGH 216 (459)
T ss_pred hccCCCcceeeEeecCC---------------CeEEEeecCCceeEeecCC-------------------cceeEEEecc
Confidence 34566777788888877 5899999999999994433 3678899999
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004603 555 TSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (743)
Q Consensus 555 ~~~V~siafspd--g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~ 632 (743)
++.|.++.|+|. +..+|||+.||+|++|++++..++..+++|...|..|+|||+|++|+|++.|.+-|+||++++..
T Consensus 217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E- 295 (459)
T KOG0272|consen 217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE- 295 (459)
T ss_pred ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-
Confidence 999999999995 66899999999999999999999999999999999999999999999999999999999999776
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEec
Q 004603 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 633 l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~ 708 (743)
+....||...|.+++|+|||. +++||+.|..-||||+|+|+|+..+.+|.. +.|+|+|-.|++|+.|++++||+.
T Consensus 296 lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 296 LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred hHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 677889999999999999987 888999999999999999999999999854 789999999999999999999986
Q ss_pred ccc--------------eEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 709 FLN--------------LLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 709 ~v~--------------~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
... .+.+.+ ..+.+|+|+|+|+++++|...-
T Consensus 375 R~r~~ly~ipAH~nlVS~Vk~~p-~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 375 RMRSELYTIPAHSNLVSQVKYSP-QEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred cccccceecccccchhhheEecc-cCCeEEEEcccCcceeeecCCC
Confidence 542 233333 2378999999999999997654
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.4e-30 Score=264.87 Aligned_cols=226 Identities=25% Similarity=0.336 Sum_probs=191.4
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004603 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.+...+.++.|+|++ ..+++|+-|.++++|+. .+.++..+.++|..
T Consensus 113 GH~e~Vl~~~fsp~g---------------~~l~tGsGD~TvR~WD~-------------------~TeTp~~t~KgH~~ 158 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTG---------------SRLVTGSGDTTVRLWDL-------------------DTETPLFTCKGHKN 158 (480)
T ss_pred CCCCcEEEEEecCCC---------------ceEEecCCCceEEeecc-------------------CCCCcceeecCCcc
Confidence 345577788899977 58999999999999944 44467889999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEcccCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCC
Q 004603 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~-i~~l~~H~~~V~~vafsp-----~~~~LaSgs~Dg~VrvWDl~~~~ 630 (743)
.|.||+|+|||+.||+|+.||+|++||..+++. .+.|.+|+..|++++|.| .+++|++++.||.|+|||+.-+.
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 999999999999999999999999999988765 468999999999999987 46789999999999999998644
Q ss_pred eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----e-----------eeecCCCE--
Q 004603 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----M-----------PIILKGCF-- 693 (743)
Q Consensus 631 ~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i-----------~~s~~g~~-- 693 (743)
|+..+.+|+..|+||+|-- ..++++|+.|++|++|+...|++.+.+++|.. + +|.+.+.+
T Consensus 239 -~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 239 -CVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred -EEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence 6999999999999999974 45899999999999999999999999988732 2 23344444
Q ss_pred -----------------------EEEEecCCeEEEEecccc-------------eEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 694 -----------------------ILNSIFNCYLLLHRIFLN-------------LLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 694 -----------------------l~sgs~Dg~I~vh~~~v~-------------~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
+++|++|.++.+|+.... +..+.+.++..+|++++.|..|++|+
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 999999999999865421 23445556689999999999999997
Q ss_pred CC
Q 004603 738 EL 739 (743)
Q Consensus 738 ~~ 739 (743)
.+
T Consensus 396 g~ 397 (480)
T KOG0271|consen 396 GR 397 (480)
T ss_pred CC
Confidence 64
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2.4e-28 Score=246.23 Aligned_cols=248 Identities=15% Similarity=0.263 Sum_probs=201.0
Q ss_pred cccCCCCCceEEEEecCCC-ccccccCc-------cccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 004603 474 LQHNGASSKSLLMFGSDGM-GSLTSAPN-------QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~dg~-~~l~~~~~-------~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
...+++-+..+++|..-.. +..+.+-. .+.+...++++|+.|+...+|...... .....
T Consensus 69 ~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d-------------~~g~~ 135 (343)
T KOG0286|consen 69 RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD-------------AEGNV 135 (343)
T ss_pred eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc-------------ccccc
Confidence 3445566667777765443 22222211 145667899999999988888554221 11233
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvW 624 (743)
...+.+.+|++.+.||.|-+| ..|+|++.|.++.+||+++++.+..|.+|++.|.++++.| +++.|+||+.|++.++|
T Consensus 136 ~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW 214 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW 214 (343)
T ss_pred eeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence 456778999999999999875 4688999999999999999999999999999999999999 89999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec------cCceeeecCCCEEEEEe
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV------CNLMPIILKGCFILNSI 698 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~------~~~i~~s~~g~~l~sgs 698 (743)
|+|.+. ++.+|.+|++.|++|+|+|+|. -|++|++|+++|+||+|....+..|.. .+.+.|+..|++|++|.
T Consensus 215 D~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 215 DVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eccCcc-eeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence 999975 6999999999999999999986 778999999999999999988888764 36688999999999999
Q ss_pred cCCeEEEEecc------------cceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 699 FNCYLLLHRIF------------LNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 699 ~Dg~I~vh~~~------------v~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
.|.++.+|+.. .++.++...+++..+++|+||.+|+||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999997643 1233334444588999999999999994
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.2e-28 Score=275.89 Aligned_cols=239 Identities=18% Similarity=0.328 Sum_probs=199.1
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCC----CCCCccccc--------cccCCCceeeeEEEeeCCCCCeEEEEEcCCCCE
Q 004603 502 LTDMDRFVDDGSLDDNVESFLSPDDA----DPRDRVGRS--------AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL 569 (743)
Q Consensus 502 l~~~~~~l~sGs~D~~V~iw~s~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~ 569 (743)
+.+...++|+|-.|..|++|...... ......... .+..+........++.+|+++|+.+.|+|+.++
T Consensus 386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rf 465 (707)
T KOG0263|consen 386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRF 465 (707)
T ss_pred ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccc
Confidence 45555799999999999999766321 000000000 111122233455668999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEe
Q 004603 570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (743)
Q Consensus 570 LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fs 649 (743)
|+++++|++||+|.+++..++..+.||..+|++|.|+|.|-+|||++.|++.++|.... ..+++.|.+|-+.|.|+.||
T Consensus 466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifaghlsDV~cv~FH 544 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFH 544 (707)
T ss_pred eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcccccccceEEEC
Confidence 99999999999999999999999999999999999999999999999999999999987 44699999999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceE
Q 004603 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLL 713 (743)
Q Consensus 650 p~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~l 713 (743)
|+.. ++++||.|.+||+||+.+|.+++.|.+|.. ++++|+|.||++|+.|+.|.+|+... ...
T Consensus 545 PNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 545 PNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIY 623 (707)
T ss_pred Cccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCcee
Confidence 9965 777999999999999999999999999854 78999999999999999999998654 234
Q ss_pred EEEecCCCCEEEEEeCCCeEEEeCCCccc
Q 004603 714 SVSEWCNPDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 714 ~v~~~~~~~~laSgs~DG~V~iWd~~~~~ 742 (743)
.+.+..++..|++||.|.+|++||-...+
T Consensus 624 SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 624 SLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 44555558999999999999999866543
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=8.7e-27 Score=233.94 Aligned_cols=242 Identities=21% Similarity=0.295 Sum_probs=196.7
Q ss_pred ccccCCCCCceEEEEecCCC-ccccccCccccCC------------CCEEEEeeCCCcEEEEecCCCCCCCCcccccccc
Q 004603 473 TLQHNGASSKSLLMFGSDGM-GSLTSAPNQLTDM------------DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~dg~-~~l~~~~~~l~~~------------~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~ 539 (743)
.+..++++++.++.|..... ..+..+...+.+| ..+..++++|+.+++|+...+
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g------------- 95 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG------------- 95 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC-------------
Confidence 45667889999999987765 2333333344333 567788999999999955443
Q ss_pred CCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc--CCCEEEEEEcCC--CCEEEEE
Q 004603 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPS--LSRLATS 615 (743)
Q Consensus 540 ~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H--~~~V~~vafsp~--~~~LaSg 615 (743)
+....|.+|+..|.+++|++|.+.|++|+.|++|++||+.. .+..++.++ ++.|+||+|+|+ ..+|+++
T Consensus 96 ------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 96 ------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred ------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 56678899999999999999999999999999999999875 444455443 799999999997 7799999
Q ss_pred eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCC
Q 004603 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGC 692 (743)
Q Consensus 616 s~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~ 692 (743)
+.|++|++||+++-+. ...+.+|.+.|+.++++|||. ++++|+.||.+.+||++.++++..+.+. ..++|+|+.-
T Consensus 169 s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnry 246 (315)
T KOG0279|consen 169 SWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRY 246 (315)
T ss_pred cCCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCce
Confidence 9999999999998554 778999999999999999987 8889999999999999999998888764 4578999887
Q ss_pred EEEEEecCCeEEEEecc---------------------cceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 693 FILNSIFNCYLLLHRIF---------------------LNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 693 ~l~sgs~Dg~I~vh~~~---------------------v~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
+|+.+... .|+||+.. ..++.+.+..++..|++|-.|+.|++|.
T Consensus 247 wL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 247 WLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 77766554 48887643 2345556666689999999999999995
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-27 Score=246.86 Aligned_cols=241 Identities=16% Similarity=0.280 Sum_probs=196.6
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCC--------------------------
Q 004603 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR-------------------------- 530 (743)
Q Consensus 477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~-------------------------- 530 (743)
.+..-+.++.|+||+ ..|++|+.|+.|++|+...+....
T Consensus 155 gH~~WVlcvawsPDg---------------k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~ 219 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDG---------------KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRR 219 (480)
T ss_pred CCccEEEEEEECCCc---------------chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccc
Confidence 344556666777766 366777777777777654443211
Q ss_pred ------CccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEE
Q 004603 531 ------DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604 (743)
Q Consensus 531 ------~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~va 604 (743)
|..+++|+...+ .++.++.+|+.+|+||+|--+| +|++|+.|++|++|+...|++.+.+++|...|..++
T Consensus 220 las~skDg~vrIWd~~~~---~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 220 LASSSKDGSVRIWDTKLG---TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred eecccCCCCEEEEEccCc---eEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence 222233433322 5788899999999999997544 899999999999999999999999999999999998
Q ss_pred Ec-----------CCCC-------------------------EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 004603 605 FS-----------PSLS-------------------------RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (743)
Q Consensus 605 fs-----------p~~~-------------------------~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~f 648 (743)
.+ |.++ .+++|++|.++.+|+....+.++..+.+|...|+.+.|
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF 375 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence 76 3233 49999999999999998877788999999999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ce
Q 004603 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NL 712 (743)
Q Consensus 649 sp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~ 712 (743)
+||+. ++++++.|..|++||.++|+.+.+|++|-. ++++.|.++|++|+.|.++++|+... .+
T Consensus 376 SPd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 376 SPDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred CCCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence 99986 778999999999999999999999998854 77889999999999999999987643 35
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 713 LSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 713 l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
+++....++..+++|+.|..+++|.
T Consensus 455 f~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 455 FAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEecCCCceeecCCCceEEEeec
Confidence 6666667799999999999999996
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-26 Score=232.01 Aligned_cols=215 Identities=16% Similarity=0.178 Sum_probs=185.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
...+.+++.|.++.+|....+ +......++.++||+..|..++.++||.+.++++.|+++++||+.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA 93 (315)
T ss_pred CceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEec
Confidence 378899999999999977655 222335688899999999999999999999999999999999999
Q ss_pred CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC--CCCeEEEEEecCC-CcEEEEEeCC
Q 004603 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STTVMSLDFHPSK-EDLLCSCDNN 662 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h--~~~V~sl~fsp~g-~~lL~Sgs~D 662 (743)
+++..+.|.+|+..|.+++|++|.+.|+||+.|++|++|++... |..++..+ +..|.+++|+|.. ..++++++.|
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc--EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 99999999999999999999999999999999999999998752 34555443 7899999999985 5588899999
Q ss_pred CcEEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc-------------ceEEEEecCCCCEEE
Q 004603 663 SEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEIS 725 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------~~l~v~~~~~~~~la 725 (743)
++|+|||+++-+....+.+|+ .+.++|||..+++|+.||.+.+|+... ..++|.+ ..+.+
T Consensus 172 ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp---nrywL 248 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP---NRYWL 248 (315)
T ss_pred ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC---CceeE
Confidence 999999999999988888874 478999999999999999999988643 2333332 67888
Q ss_pred EEeCCCeEEEeCCC
Q 004603 726 TSSWKDSCCSHREL 739 (743)
Q Consensus 726 Sgs~DG~V~iWd~~ 739 (743)
+...+..|+|||..
T Consensus 249 ~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 249 CAATATSIKIWDLE 262 (315)
T ss_pred eeccCCceEEEecc
Confidence 88888899999864
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=1.7e-27 Score=266.70 Aligned_cols=188 Identities=28% Similarity=0.405 Sum_probs=174.0
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004603 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (743)
Q Consensus 502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~I 581 (743)
+.+.++||.++|.|.+|++| .-.++..+-.++||..+|+++.|+|.|-+|||||.|++.++
T Consensus 459 FsPd~rfLlScSED~svRLW-------------------sl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLW-------------------SLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred ecccccceeeccCCcceeee-------------------ecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 34445899999999999999 44556777888999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 582 Wd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~ 661 (743)
|..+..++++.|.+|-+.|.|+.|||+..+++|||.|.+||+||+.++.. ++.|.||.++|.+|+|+|+|. +|++|+.
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr-~LaSg~e 597 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGR-YLASGDE 597 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCc-eEeeccc
Confidence 99999999999999999999999999999999999999999999999775 999999999999999999987 7789999
Q ss_pred CCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc
Q 004603 662 NSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v 710 (743)
|+.|+|||+.+++.+..+.+|+. +.|+.+|..|++|+.|+.|++|+...
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999998854 77999999999999999999998654
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=255.05 Aligned_cols=227 Identities=26% Similarity=0.410 Sum_probs=192.0
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
...+.++.|++++ +++++++.|+.+++|......+ .....+.+|...|
T Consensus 159 ~~sv~~~~fs~~g---------------~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v 206 (456)
T KOG0266|consen 159 CPSVTCVDFSPDG---------------RALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGV 206 (456)
T ss_pred cCceEEEEEcCCC---------------CeEEEccCCCcEEEeecccccc-----------------hhhccccccccce
Confidence 4567778888877 5799999999999996632210 2445558999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 559 ESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 559 ~siafspdg~~LaSgs~Dg~V~IWd~-~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
.+|+|+|+++++++|+.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|||||+++++ ++..+.
T Consensus 207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~ 285 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLK 285 (456)
T ss_pred eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeee
Confidence 99999999999999999999999999 5568999999999999999999999999999999999999999854 699999
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe--eeEEEecc------CceeeecCCCEEEEEecCCeEEEEecc
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~--~v~~~~~~------~~i~~s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
+|...|++++|.+++. +|++++.|+.|+|||+.++. |+..+..+ ..+.|+|++.|+++++.|+.+++|+..
T Consensus 286 ~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred ccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 9999999999999987 56677889999999999999 55666543 346788999999999999999998765
Q ss_pred cc---------------eEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 710 LN---------------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 710 v~---------------~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.. .+.+.....+.++++|+.|+.|++|+..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 21 1122223457899999999999999875
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=222.52 Aligned_cols=213 Identities=21% Similarity=0.288 Sum_probs=174.0
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
+.++|+++|+|.++.+|.- ....++++.+++||...|.|++|+++|++||+++.|+.|-||.+
T Consensus 72 ~g~~La~aSFD~t~~Iw~k-----------------~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWKK-----------------EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred CCcEEEEeeccceEEEeec-----------------CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 4479999999999999932 34467889999999999999999999999999999999999998
Q ss_pred CC---CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CCeeEEEEecCCCCeEEEEEecCCCcEEEEE
Q 004603 585 ES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 585 ~t---~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~--~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg 659 (743)
.. .+++..+.+|+..|..|.|||...+|+|++.|.+|++|+-.. .-.|+.++.+|+..|.+++|++.|. -|++|
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~ 213 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSC 213 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEe
Confidence 63 568889999999999999999999999999999999998662 2357899999999999999999985 56799
Q ss_pred eCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEE---------------------EecccceEEEEec
Q 004603 660 DNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLL---------------------HRIFLNLLSVSEW 718 (743)
Q Consensus 660 s~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~v---------------------h~~~v~~l~v~~~ 718 (743)
+.|++|+||-..+.-....-.....+++. ...|++++.|+.|++ |...++.+.|.+.
T Consensus 214 sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 214 SDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred cCCcceEeeeeccCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC
Confidence 99999999986532111000001112333 567889999999888 5556677777762
Q ss_pred CCCCEEEEEeCCCeEEEeCC
Q 004603 719 CNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 719 ~~~~~laSgs~DG~V~iWd~ 738 (743)
..+.|++||.||.|++|.-
T Consensus 292 -~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 292 -VSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred -CCCceeecCCCceEEEEEe
Confidence 2679999999999999963
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=5e-25 Score=222.37 Aligned_cols=228 Identities=23% Similarity=0.345 Sum_probs=196.0
Q ss_pred ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004603 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (743)
Q Consensus 475 ~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (743)
...+...+.++.|++|. +.++++|.||.+-+|++ .+...++.+.-.
T Consensus 51 LkGH~~Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs-------------------~TtnK~haipl~ 96 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDS---------------RRIVSASQDGKLIVWDS-------------------FTTNKVHAIPLP 96 (343)
T ss_pred ecccccceeeeEecCCc---------------CeEEeeccCCeEEEEEc-------------------ccccceeEEecC
Confidence 34555678888999877 68999999999999944 334556777778
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~------~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~ 628 (743)
+..|..|+|+|.|+++|+|+-|+.+.||++.+. +..+.+.+|++.+.|+.|-+| ..|+|++.|.+.-+||+++
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET 175 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc
Confidence 889999999999999999999999999999854 456778999999999999874 6789999999999999999
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEE
Q 004603 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~ 704 (743)
+.. +..|.+|.+.|.+|++.|...+.|++|+-|+..++||+|.+.|+.+|.+|. .+.|.|+|.-+++|++|++.+
T Consensus 176 g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 176 GQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred ceE-EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeE
Confidence 776 899999999999999999656688899999999999999999999999984 488999999999999999999
Q ss_pred EEeccc--------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 705 LHRIFL--------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 705 vh~~~v--------------~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+++..- ....+.+...+.++++|..|.+|.+||.
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 966542 1223333444889999999999999986
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=231.70 Aligned_cols=211 Identities=18% Similarity=0.258 Sum_probs=183.0
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
.+.|+++|+.|+++++|+...+ ....++.||-..|..+++|+--.++++++.|+.|+.||+
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred CceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 3479999999999999966554 567788999999999999999999999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
+..+.++.+.||-..|+|++.+|.-+.|+||+.|.++||||+|+.. .+.++.||...|.+|.+.|..+.+ ++|+.|++
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~t 300 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQV-ITGSHDST 300 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCce-EEecCCce
Confidence 9999999999999999999999999999999999999999999855 599999999999999999887754 59999999
Q ss_pred EEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEe--------------cccceEEEEecCCCCEEEE
Q 004603 665 IRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHR--------------IFLNLLSVSEWCNPDEIST 726 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~--------------~~v~~l~v~~~~~~~~laS 726 (743)
||+||++.|+...++..|. +++++|....+++++.|. |+-|+ ..+..+.+.. .+++++
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~ns---D~v~~~ 376 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNS---DGVLVS 376 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeecc---CceEEE
Confidence 9999999999998888763 467889999999998885 33333 3334444433 569999
Q ss_pred EeCCCeEEEeCCCc
Q 004603 727 SSWKDSCCSHRELY 740 (743)
Q Consensus 727 gs~DG~V~iWd~~~ 740 (743)
|+.+|.+.+||-+-
T Consensus 377 G~dng~~~fwdwks 390 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKS 390 (460)
T ss_pred cCCceEEEEEecCc
Confidence 99999999998653
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=241.54 Aligned_cols=223 Identities=21% Similarity=0.354 Sum_probs=191.6
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
...+..+.|.|+| +.|.+|+..|.+.+| .+..+.....+.+|.++|
T Consensus 96 kc~V~~v~WtPeG---------------RRLltgs~SGEFtLW-------------------Ng~~fnFEtilQaHDs~V 141 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG---------------RRLLTGSQSGEFTLW-------------------NGTSFNFETILQAHDSPV 141 (464)
T ss_pred ccceeeEEEcCCC---------------ceeEeecccccEEEe-------------------cCceeeHHHHhhhhcccc
Confidence 3456677888888 678999999999999 555666667788999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 559 ~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H-~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
.++.|++++.++++|+.+|.|++|+.. ...+..+.+| ...|++++|+|+...|+||+.||+|+|||.+..+. -+.+.
T Consensus 142 r~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~ 219 (464)
T KOG0284|consen 142 RTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLR 219 (464)
T ss_pred eeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheec
Confidence 999999999999999999999999965 3444455555 48999999999999999999999999999988665 56789
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEec-----
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRI----- 708 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~----- 708 (743)
||.-.|.+++|||... ++++++.|..|++||.+++.|+.++.+|.. +.|.++++||++++.|..+++.|+
T Consensus 220 GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred cCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 9999999999999855 888999999999999999999999988744 568899999999999999999554
Q ss_pred ---------ccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 709 ---------FLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 709 ---------~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.+..+.|.+.. .++|.+|++||.|..|.-.
T Consensus 299 l~~~r~Hkkdv~~~~WhP~~-~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 299 LFTYRGHKKDVTSLTWHPLN-ESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHHhhcchhhheeecccccc-ccceeeccCCCceEEEecc
Confidence 45667777665 7899999999999999654
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=7.5e-25 Score=248.40 Aligned_cols=218 Identities=23% Similarity=0.350 Sum_probs=185.1
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
..+++++++.|.++++|+... ....++++++|...|+||+|+|++++|++|+.|++|+|||+
T Consensus 214 d~~~l~s~s~D~tiriwd~~~------------------~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKD------------------DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred CCcEEEEecCCceEEEeeccC------------------CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence 346999999999999995522 22577889999999999999999999999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCCCC--eEEEEEecCCCcEEEEEeC
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~-~l~~l~~h~~~--V~sl~fsp~g~~lL~Sgs~ 661 (743)
++++++..+.+|...|++++|++++.+|++++.|+.|+|||+.++.. ++..+.++... +++++|+|++.+++ ++..
T Consensus 276 ~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll-~~~~ 354 (456)
T KOG0266|consen 276 RTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL-SASL 354 (456)
T ss_pred cCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE-EecC
Confidence 99999999999999999999999999999999999999999998774 36777777766 99999999988555 8888
Q ss_pred CCcEEEEECCCCeeeEEEeccCc-------eeeecCCCEEEEEecCCeEEEEeccc-------------ceEEEEecCCC
Q 004603 662 NSEIRYWSINNGSCAGVFKVCNL-------MPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNP 721 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~~~~-------i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------~~l~v~~~~~~ 721 (743)
|+.|++||++.+.++..+.+|.. ....+.+.++++|+.|+.|.+|+... ...........
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~ 434 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTE 434 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCc
Confidence 99999999999999999988744 12357899999999999999987651 12223333446
Q ss_pred CEEEEEe--CCCeEEEeCCCcc
Q 004603 722 DEISTSS--WKDSCCSHRELYL 741 (743)
Q Consensus 722 ~~laSgs--~DG~V~iWd~~~~ 741 (743)
.++++++ .|+.|++|...++
T Consensus 435 ~~~~s~s~~~d~~~~~w~~~~~ 456 (456)
T KOG0266|consen 435 NLIASSSFEGDGLIRLWKYDFL 456 (456)
T ss_pred CeeeecCcCCCceEEEecCCCC
Confidence 7888888 7999999988753
No 16
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=217.24 Aligned_cols=215 Identities=23% Similarity=0.366 Sum_probs=179.7
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEe-eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.++++|+.|+.|++|.... +.++.....+ .+|+..|.+|+|+|.|++||+|+.|.++.||.-.
T Consensus 28 ~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred eEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 5899999999999995532 2234444444 4799999999999999999999999999999754
Q ss_pred --CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603 586 --SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 586 --t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~ 661 (743)
..+++.+++||...|.|++|+++|.+||||+.|+.|-||.+.... .|+..+.+|+..|..+.|||... +|++|+.
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SY 170 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSY 170 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEecc
Confidence 467899999999999999999999999999999999999988433 46889999999999999999854 8899999
Q ss_pred CCcEEEEECC---CCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEec--cc-----ceEEEEecCCCCEEEEE
Q 004603 662 NSEIRYWSIN---NGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRI--FL-----NLLSVSEWCNPDEISTS 727 (743)
Q Consensus 662 Dg~IrvWDl~---tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~--~v-----~~l~v~~~~~~~~laSg 727 (743)
|.+|++|+-. ...|+.++.+|+. +.|.+.|..|++++.|++++||.. .+ ..+...+++ .+.|+|+
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-~~~IaS~ 249 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD-NGVIASG 249 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec-ccceEec
Confidence 9999999776 3478899998863 668899999999999999999882 11 222222232 6799999
Q ss_pred eCCCeEEEeCCC
Q 004603 728 SWKDSCCSHREL 739 (743)
Q Consensus 728 s~DG~V~iWd~~ 739 (743)
+.|+.|++|.+.
T Consensus 250 ggD~~i~lf~~s 261 (312)
T KOG0645|consen 250 GGDDAIRLFKES 261 (312)
T ss_pred cCCCEEEEEEec
Confidence 999999999754
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.9e-25 Score=217.14 Aligned_cols=224 Identities=17% Similarity=0.199 Sum_probs=193.0
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+...+..+.|+.|| ++..+++.|.+|++|.. .....++++.+|...
T Consensus 16 ~qgaV~avryN~dG---------------nY~ltcGsdrtvrLWNp-------------------~rg~liktYsghG~E 61 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDG---------------NYCLTCGSDRTVRLWNP-------------------LRGALIKTYSGHGHE 61 (307)
T ss_pred cccceEEEEEccCC---------------CEEEEcCCCceEEeecc-------------------cccceeeeecCCCce
Confidence 44577788888888 68899999999999944 334688999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeEEEE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF 636 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~-~~l~~l 636 (743)
|..++.+.|...|++|+.|+.|.+||+.+++.++.|.+|.+.|..|+|+.+...+++|+.|.+||+||.+... .++..+
T Consensus 62 VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 62 VLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred eeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998754 468888
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc--CceeeecCCCEEEEEecCCeEEEEecc-----
Q 004603 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIFNCYLLLHRIF----- 709 (743)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~l~sgs~Dg~I~vh~~~----- 709 (743)
......|.+|.... +.+++|+.||++|.||++.|.....+-++ +++.|++++++++.++.|+++++-+..
T Consensus 142 dea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred hhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 88889999999874 46779999999999999999987777765 568899999999999999999994432
Q ss_pred ---------cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 710 ---------LNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 710 ---------v~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
...+.-+.......+++|+.||.|++||-
T Consensus 219 ~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred HHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence 22333344444679999999999999984
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1.2e-26 Score=242.57 Aligned_cols=227 Identities=15% Similarity=0.240 Sum_probs=193.2
Q ss_pred ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee
Q 004603 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (743)
.+...+...++.+.|++++ .++++|+.++.|+.|.. .+..++.+.
T Consensus 132 tilQaHDs~Vr~m~ws~~g---------------~wmiSgD~gG~iKyWqp--------------------nmnnVk~~~ 176 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNG---------------TWMISGDKGGMIKYWQP--------------------NMNNVKIIQ 176 (464)
T ss_pred HHhhhhcccceeEEEccCC---------------CEEEEcCCCceEEeccc--------------------chhhhHHhh
Confidence 3445567788888888877 69999999999999932 233455556
Q ss_pred CCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004603 553 AST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 553 ~H~-~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~ 631 (743)
+|. ..|+|++|+|+...|++|++|++|+|||....+..+.+.+|...|.|++|||...+|++++.|..|++||.+++.
T Consensus 177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~- 255 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS- 255 (464)
T ss_pred HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-
Confidence 555 899999999998999999999999999999999989999999999999999999999999999999999999976
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeec-CCCEEEEEecCCeEEEE
Q 004603 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIIL-KGCFILNSIFNCYLLLH 706 (743)
Q Consensus 632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~-~g~~l~sgs~Dg~I~vh 706 (743)
|+.++.+|...|..+.|.|++ .+|+++|.|..++++|+++.+.+.++++|.. +.++| ....+.+|+.||.|..|
T Consensus 256 cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~ 334 (464)
T KOG0284|consen 256 CLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW 334 (464)
T ss_pred hhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEE
Confidence 499999999999999999998 5777999999999999999888889988743 55666 45678889999999986
Q ss_pred ecc---------------cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 707 RIF---------------LNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 707 ~~~---------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
... +..+++.+- +..|++|+.|.++++|..
T Consensus 335 ~v~~~~p~~~i~~AHd~~iwsl~~hPl--Ghil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 335 VVGLEEPLGEIPPAHDGEIWSLAYHPL--GHILATGSNDRTVRFWTR 379 (464)
T ss_pred eccccccccCCCcccccceeeeecccc--ceeEeecCCCcceeeecc
Confidence 543 445555554 678999999999999953
No 19
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=1.2e-26 Score=237.90 Aligned_cols=205 Identities=17% Similarity=0.280 Sum_probs=175.4
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..+++|..|++|++|+. ........+.||++.|.|+.| +.+.|++|+.|.+|+|||+.+
T Consensus 208 ~kiVSGlrDnTikiWD~-------------------n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDK-------------------NSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred hhhhcccccCceEEecc-------------------ccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC
Confidence 56799999999999933 334566778999999999999 567999999999999999999
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~--~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
++++.++.+|...|..++|+ ..+++|++.|.+|+|||+..+.. +.+.+.||...|+.+.|+.. ++++++.|.+
T Consensus 267 ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRT 341 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRT 341 (499)
T ss_pred CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCce
Confidence 99999999999999999997 46899999999999999987652 34578899999999999743 8889999999
Q ss_pred EEEEECCCCeeeEEEeccCc--eeeecCCCEEEEEecCCeEEEEecccce------------EEEEecCCCCEEEEEeCC
Q 004603 665 IRYWSINNGSCAGVFKVCNL--MPIILKGCFILNSIFNCYLLLHRIFLNL------------LSVSEWCNPDEISTSSWK 730 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~~~~~--i~~s~~g~~l~sgs~Dg~I~vh~~~v~~------------l~v~~~~~~~~laSgs~D 730 (743)
|++|++.++++++++.+|.. .+.-..++++++|+.|.+|++|+..-.. -++.++ ...|++|++|
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD 419 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD 419 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc
Confidence 99999999999999999843 4455789999999999999999875321 122233 6799999999
Q ss_pred CeEEEeCCC
Q 004603 731 DSCCSHREL 739 (743)
Q Consensus 731 G~V~iWd~~ 739 (743)
|+|++||-.
T Consensus 420 GkikvWdl~ 428 (499)
T KOG0281|consen 420 GKIKVWDLQ 428 (499)
T ss_pred ceEEEEecc
Confidence 999999854
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=1.7e-24 Score=230.12 Aligned_cols=224 Identities=17% Similarity=0.321 Sum_probs=191.9
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (743)
Q Consensus 480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (743)
.+++++.|+.+| .+|++|+.||.+++|.... ..+.++.-|+++|.
T Consensus 236 kdVT~L~Wn~~G---------------~~LatG~~~G~~riw~~~G--------------------~l~~tl~~HkgPI~ 280 (524)
T KOG0273|consen 236 KDVTSLDWNNDG---------------TLLATGSEDGEARIWNKDG--------------------NLISTLGQHKGPIF 280 (524)
T ss_pred CCcceEEecCCC---------------CeEEEeecCcEEEEEecCc--------------------hhhhhhhccCCceE
Confidence 478889999988 5999999999999994422 35667888999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------------------------------------EEEEEcccCC
Q 004603 560 SCHFSPDGKLLATGGHDKKAVLWCTESFT-----------------------------------------VKSTLEEHTQ 598 (743)
Q Consensus 560 siafspdg~~LaSgs~Dg~V~IWd~~t~~-----------------------------------------~i~~l~~H~~ 598 (743)
++.|+.+|++|++++.|+++.|||..++. ++.++.+|.+
T Consensus 281 slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g 360 (524)
T KOG0273|consen 281 SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG 360 (524)
T ss_pred EEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC
Confidence 99999999999999999999999985432 2334568999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC--------cEEEEEeCCCcEEEEEC
Q 004603 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--------DLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 599 ~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~--------~lL~Sgs~Dg~IrvWDl 670 (743)
.|.++.|+|.+.+|+||+.|++++||...... ++..+.+|+..|+.+.|+|+|+ ..+++++.|++|++||+
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 99999999999999999999999999987754 5889999999999999999753 36789999999999999
Q ss_pred CCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEEecCCCCEEEEEeCCCeEEE
Q 004603 671 NNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEISTSSWKDSCCS 735 (743)
Q Consensus 671 ~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~~v-----------~~l~v~~~~~~~~laSgs~DG~V~i 735 (743)
..+.++++|..|. .+.|+|+|+|+++|+.|+.|.+|+... ..+.+++.+++..|..+-.||.|++
T Consensus 440 ~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 440 ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred cCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 9999999997764 378999999999999999999986542 2355666666889999999999998
Q ss_pred eCCC
Q 004603 736 HREL 739 (743)
Q Consensus 736 Wd~~ 739 (743)
-|-+
T Consensus 520 ldlr 523 (524)
T KOG0273|consen 520 LDLR 523 (524)
T ss_pred EEec
Confidence 8754
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=236.65 Aligned_cols=229 Identities=17% Similarity=0.212 Sum_probs=199.3
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
.+..+.++-+||.. .++.++-+.|.|.+| +..+..+++.+.-..-+
T Consensus 12 rSdRVKsVd~HPte---------------Pw~la~LynG~V~IW-------------------nyetqtmVksfeV~~~P 57 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTE---------------PWILAALYNGDVQIW-------------------NYETQTMVKSFEVSEVP 57 (794)
T ss_pred cCCceeeeecCCCC---------------ceEEEeeecCeeEEE-------------------ecccceeeeeeeecccc
Confidence 45566667777755 689999999999999 44455788888888899
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
|.++.|-+..++|++|++|..|+||+..+++.+..|+.|.+.|.|++.||...+++|+++|-+|++||.+..-.|..+|.
T Consensus 58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred hhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----ceeeec--CCCEEEEEecCCeEEEEeccc-
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIIL--KGCFILNSIFNCYLLLHRIFL- 710 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~--~g~~l~sgs~Dg~I~vh~~~v- 710 (743)
||+..|++|+|+|.....|+||+.|++|+||.+....+..++.+|. ++.+-+ |..||++|++|.+++||+...
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 9999999999999999999999999999999999999999999874 355554 446999999999999987532
Q ss_pred -----------ceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 711 -----------NLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 711 -----------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
+.-.+++.+.-..|+|||.||+|+||....
T Consensus 218 ~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 223334444456999999999999997653
No 22
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.6e-25 Score=218.85 Aligned_cols=214 Identities=16% Similarity=0.274 Sum_probs=183.2
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd 583 (743)
+++.+.+++-||++++|+.. ....++..+++|...|.+|.|++ +++.+++++.|++||+|+
T Consensus 72 ~e~~~~~a~GDGSLrl~d~~------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~ 133 (311)
T KOG0277|consen 72 HENQVIAASGDGSLRLFDLT------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD 133 (311)
T ss_pred CcceEEEEecCceEEEeccC------------------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec
Confidence 46888999999999999532 22357888999999999999998 667888999999999999
Q ss_pred CCCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603 584 TESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 584 ~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D 662 (743)
....+.+.+|.||..-|+...|+| ..++|++++.|+++++||++.... ...+..|...|.+++|+.-.+++|++|+.|
T Consensus 134 ~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 134 PNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred CCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEecCCC
Confidence 999999999999999999999999 588999999999999999998776 444888999999999999989999999999
Q ss_pred CcEEEEECCCC-eeeEEEeccC----ceeeecC-CCEEEEEecCCeEEEEecc---------------cceEEEEecCCC
Q 004603 663 SEIRYWSINNG-SCAGVFKVCN----LMPIILK-GCFILNSIFNCYLLLHRIF---------------LNLLSVSEWCNP 721 (743)
Q Consensus 663 g~IrvWDl~tg-~~v~~~~~~~----~i~~s~~-g~~l~sgs~Dg~I~vh~~~---------------v~~l~v~~~~~~ 721 (743)
+.||+||+++- .++.++.+|. .+.++|. ...|++++.|-++++|+.. +..+.|+.. .+
T Consensus 213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~-~~ 291 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF-DP 291 (311)
T ss_pred ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc-cC
Confidence 99999999975 4566676663 3667764 4568899999999997654 344556666 48
Q ss_pred CEEEEEeCCCeEEEeCC
Q 004603 722 DEISTSSWKDSCCSHRE 738 (743)
Q Consensus 722 ~~laSgs~DG~V~iWd~ 738 (743)
+.+|+++||+.++||+.
T Consensus 292 ~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWNP 308 (311)
T ss_pred ceeeecccccceeeecc
Confidence 99999999999999985
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.5e-24 Score=236.41 Aligned_cols=215 Identities=20% Similarity=0.285 Sum_probs=185.8
Q ss_pred cccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004603 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (743)
Q Consensus 501 ~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~ 580 (743)
.+-...+++++|+.|..|++| ...+...++.|++|.+.|.||+.||.-.+++|+|+|-+|+
T Consensus 62 kfiaRknWiv~GsDD~~IrVf-------------------nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 62 KFIARKNWIVTGSDDMQIRVF-------------------NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred eeeeccceEEEecCCceEEEE-------------------ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEE
Confidence 355567999999999999999 4445578999999999999999999999999999999999
Q ss_pred EEECCC-CeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCC-CcEEE
Q 004603 581 LWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLC 657 (743)
Q Consensus 581 IWd~~t-~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g-~~lL~ 657 (743)
+||.+. ..+..+|+||+..|.+|+|+| |.+.|+|++-|++|+||.+..+. +..++.+|...|++|+|-+.| +.+|+
T Consensus 123 lW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 123 LWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred EeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEE
Confidence 999986 578899999999999999999 67899999999999999999855 589999999999999998765 33777
Q ss_pred EEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceEEEEecCCC
Q 004603 658 SCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNP 721 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~l~v~~~~~~ 721 (743)
+|+.|.+|+|||..+..|+.++.+|+. ++|+|.-..+++|++||++++|.... ++.++......
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~ 281 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD 281 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC
Confidence 999999999999999999999999854 77999999999999999999986543 23344433556
Q ss_pred CEEEEEeCCCeEEE
Q 004603 722 DEISTSSWKDSCCS 735 (743)
Q Consensus 722 ~~laSgs~DG~V~i 735 (743)
+.++.|...|.|.+
T Consensus 282 ~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 282 GKIAVGFDEGSVTV 295 (794)
T ss_pred CeEEEeccCCcEEE
Confidence 77888888877654
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=207.71 Aligned_cols=192 Identities=16% Similarity=0.221 Sum_probs=158.9
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD 625 (743)
.++.++.+|+.-|++|.|.-+|++++|||+||+|||||++...+-+.+. |..+|++|..+|+...|++|..+|.|++||
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 4889999999999999999999999999999999999999977766664 779999999999999999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe------eeEEEeccCc----eeeecCCCEEE
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVFKVCNL----MPIILKGCFIL 695 (743)
Q Consensus 626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~------~v~~~~~~~~----i~~s~~g~~l~ 695 (743)
+.+..+....+......|.++...|+|. +++++...|.++||++-+.. ++..|..|+. +.++|+++||+
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence 9986542333334457899999999997 56677778999999997653 4455665543 66899999999
Q ss_pred EEecCCeEEEEecccc-e------------EEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 696 NSIFNCYLLLHRIFLN-L------------LSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 696 sgs~Dg~I~vh~~~v~-~------------l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+++.|.+++||..... . ....+..++.+|++++.|+.+++|+-.
T Consensus 232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 9999999999987654 1 112334558899999999999999854
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=7.1e-24 Score=214.85 Aligned_cols=227 Identities=18% Similarity=0.263 Sum_probs=189.6
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+...+-.+.|+|++ .++++|+.|..|.+|....+ .+-+..+++|++.
T Consensus 46 h~geI~~~~F~P~g---------------s~~aSgG~Dr~I~LWnv~gd------------------ceN~~~lkgHsgA 92 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDG---------------SCFASGGSDRAIVLWNVYGD------------------CENFWVLKGHSGA 92 (338)
T ss_pred CcceEEEEEECCCC---------------CeEeecCCcceEEEEecccc------------------ccceeeeccccce
Confidence 34456677899977 58999999999999954333 1234566799999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
|..+.|.+|++.|++++.|++|+.||+++++.++.+++|...|..+.-+.- ..++.|++.|+++||||+|+.. +++++
T Consensus 93 VM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~ 171 (338)
T KOG0265|consen 93 VMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTF 171 (338)
T ss_pred eEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhcc
Confidence 999999999999999999999999999999999999999999999873333 3467888999999999999844 47777
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc--
Q 004603 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL-- 710 (743)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v-- 710 (743)
. ..-.++++.|.-++..++ +|+-|+.|++||++.+.+..++++| +.+..+++|.++.+-+.|+++++|+..-
T Consensus 172 ~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 172 E-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred c-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence 5 345799999998887666 8999999999999999999999998 4477889999999999999999987542
Q ss_pred ------------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 711 ------------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 711 ------------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
..+..++.++...+.+|+.|..|++||..+
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 334445555578999999999999999876
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=3.4e-23 Score=222.52 Aligned_cols=241 Identities=19% Similarity=0.371 Sum_probs=197.1
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCC-----------------------------
Q 004603 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------------------- 527 (743)
Q Consensus 477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~----------------------------- 527 (743)
.++....+..|+|.| .++++|...|+|++|+.....
T Consensus 57 EH~~~vtVAkySPsG---------------~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~av 121 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSG---------------FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAV 121 (603)
T ss_pred cccceeEEEEeCCCc---------------eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEE
Confidence 345666666777765 699999999999999776632
Q ss_pred -CCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEE
Q 004603 528 -DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605 (743)
Q Consensus 528 -~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~-~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vaf 605 (743)
+++.++++..-...+ ..+.++.+|+..|++|+|-|... +++||++|++|.+|.-.-.+...++..|+..|.|++|
T Consensus 122 GEGrerfg~~F~~DSG---~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSG---NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred ecCccceeEEEEecCC---CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence 123333333222222 34677889999999999999766 6999999999999998888888999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe---cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc
Q 004603 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 606 sp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~---~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
+|||.+|+|++.||+|.+||=.+++. +..+. +|.+.|.+|.|+||+..++ +++.|.++||||+.+.+++.++...
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecC
Confidence 99999999999999999999998775 77777 8999999999999988555 9999999999999999999998865
Q ss_pred Cc-----eeeecCCCEEEEEecCCeEEE--------------EecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 683 NL-----MPIILKGCFILNSIFNCYLLL--------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 683 ~~-----i~~s~~g~~l~sgs~Dg~I~v--------------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.. +.+.-....|++-+.+|+|.+ |...++++.+..+ +.+|++|++||.|..|+-.
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d--~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD--GKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC--CCEEEeeccCceEEEEecC
Confidence 43 223334667888888888877 7777888888776 6899999999999999854
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=3.9e-24 Score=237.42 Aligned_cols=229 Identities=25% Similarity=0.331 Sum_probs=177.5
Q ss_pred ccccCCCCCceEEEEecCCCccc-------cccCcc------ccCCCCEEEEeeCCCcEEEEecCCCCCCCCcccccccc
Q 004603 473 TLQHNGASSKSLLMFGSDGMGSL-------TSAPNQ------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~dg~~~l-------~~~~~~------l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~ 539 (743)
.+..+++.+++++.|-.+...+. ....+. -.....|++++|.|.++++|.........
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~--------- 448 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA--------- 448 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc---------
Confidence 36677899999999966332110 001111 12235899999999999999666521111
Q ss_pred CCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC
Q 004603 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 540 ~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg 619 (743)
....+..-.+...|...|+|++++|+.++|||||.|++++||+++......++.||+..|+||.|+|....++|+|.|+
T Consensus 449 -~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~ 527 (775)
T KOG0319|consen 449 -FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK 527 (775)
T ss_pred -ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence 1112222234568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEec
Q 004603 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIF 699 (743)
Q Consensus 620 ~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~ 699 (743)
+|+||.+.+.. |+.+|.||+..|..+.|-.+|. .|+||+.||.|++|++.+++|+.++..|+.
T Consensus 528 TvKIW~is~fS-ClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~tlD~H~D--------------- 590 (775)
T KOG0319|consen 528 TVKIWSISTFS-CLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEMTLDAHND--------------- 590 (775)
T ss_pred eEEEEEeccce-eeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhhhhhhccc---------------
Confidence 99999999866 5999999999999999999987 555999999999999999999999998853
Q ss_pred CCeEEEEecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 700 NCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 700 Dg~I~vh~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.+-.++... ....++||+.||.|.+|.+.
T Consensus 591 ---------rvWaL~~~~--~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 591 ---------RVWALSVSP--LLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred ---------eeEEEeecC--ccceeEecCCCeEEEEeecC
Confidence 111222222 24467777777777777654
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=217.80 Aligned_cols=192 Identities=19% Similarity=0.278 Sum_probs=171.3
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW 624 (743)
+..++.+.+|...|.++.|-|.|.+|++++.|.+|+.|+++++.++.+|.+|...|..++.+-||.++++|+.|-+|++|
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecC--------------CCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----cee
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPS--------------KEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMP 686 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~--------------g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~ 686 (743)
-+.++. |...+..|+.+|-+++|.|. +..++++++.|++||+||+.++.|+.++.+|. .+.
T Consensus 263 ~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 263 VVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred Eeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 999854 47889999999999999883 23588899999999999999999999999984 478
Q ss_pred eecCCCEEEEEecCCeEEEEeccc--------------ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 687 IILKGCFILNSIFNCYLLLHRIFL--------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 687 ~s~~g~~l~sgs~Dg~I~vh~~~v--------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|+|.|+||++..+|+++++|+... ..+++... ..+++||+-|-++++|-++
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~--~p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT--APYVVTGSVDQTVKVWECR 406 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCC--CceEEeccccceeeeeecC
Confidence 999999999999999999987542 34444444 4599999999999999753
No 29
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2.4e-25 Score=226.34 Aligned_cols=230 Identities=21% Similarity=0.300 Sum_probs=181.8
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (743)
Q Consensus 480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (743)
.-..|..|+||+ .++++||.||-|.+|+...+.-. +......-..+.-|.++|.
T Consensus 214 Sh~EcA~FSPDg---------------qyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMmd~aVl 267 (508)
T KOG0275|consen 214 SHVECARFSPDG---------------QYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMMDDAVL 267 (508)
T ss_pred cchhheeeCCCC---------------ceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeecccceE
Confidence 355677899988 69999999999999987766321 1222222334556788999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004603 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 560 siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~-~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~ 638 (743)
|+.|+.|...+|+|+.||+|+||.+++|.|++.|. .|+..|+|+.|+.|+..+++++.|.+||+.-+..+++ +..|.|
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrG 346 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRG 346 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcC
Confidence 99999999999999999999999999999999997 8999999999999999999999999999999998775 999999
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc------------------------------------
Q 004603 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC------------------------------------ 682 (743)
Q Consensus 639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~------------------------------------ 682 (743)
|++.|+...|.++|.+++ +++.||+|+||+..+.+|+.+|+..
T Consensus 347 HsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred ccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 999999999999998665 8999999999999999887776521
Q ss_pred ---------------CceeeecCCCEEEEEecCCeEEEEecccc------------eEEEEecCCCCEEEEEeCCCeEEE
Q 004603 683 ---------------NLMPIILKGCFILNSIFNCYLLLHRIFLN------------LLSVSEWCNPDEISTSSWKDSCCS 735 (743)
Q Consensus 683 ---------------~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~------------~l~v~~~~~~~~laSgs~DG~V~i 735 (743)
-..+++|.|.|+++.++|+.+........ .+.+.-.+....+++-+.||.+++
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence 01345577777777777777666332211 111122222567888888888888
Q ss_pred eC
Q 004603 736 HR 737 (743)
Q Consensus 736 Wd 737 (743)
|+
T Consensus 506 Wk 507 (508)
T KOG0275|consen 506 WK 507 (508)
T ss_pred cC
Confidence 86
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.2e-24 Score=237.94 Aligned_cols=213 Identities=21% Similarity=0.282 Sum_probs=180.9
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
...++.++-+.|.|.+|+.. -.+.+..|.+|.++|..|+|+|+..+|++|++|.+|+||+.
T Consensus 20 ~rPwILtslHsG~IQlWDYR-------------------M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 20 KRPWILTSLHSGVIQLWDYR-------------------MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred CCCEEEEeecCceeeeehhh-------------------hhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 34799999999999999432 23566778899999999999999999999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
.+.+++.++.||-+.|..+.||+.-.+|+|+|+|-+||||+..+.. |+.++.||...|+|..|||..+ +++|+|.|-+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptED-lIVSaSLDQT 158 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTED-LIVSASLDQT 158 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccc-eEEEecccce
Confidence 9999999999999999999999999999999999999999999855 5999999999999999999754 8889999999
Q ss_pred EEEEECCCCe-----------------------------eeEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc-
Q 004603 665 IRYWSINNGS-----------------------------CAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL- 710 (743)
Q Consensus 665 IrvWDl~tg~-----------------------------~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v- 710 (743)
|||||+..-+ ..+.+.+| +.++|+|.-..|++|++|+.|++|....
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 9999985211 11233444 3478999999999999999999986543
Q ss_pred -------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 711 -------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 711 -------------~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
.+-++-+.+...+|+|.|.|++|+|||-
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 2233333433579999999999999984
No 31
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=1.4e-22 Score=230.19 Aligned_cols=189 Identities=19% Similarity=0.231 Sum_probs=156.0
Q ss_pred EEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEEcccCCCEEEEEEcCCC-CEEEEEeCCC
Q 004603 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 619 (743)
Q Consensus 549 ~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~-------~~i~~l~~H~~~V~~vafsp~~-~~LaSgs~Dg 619 (743)
..+.+|++.|++++|+| ++++|++|+.|++|+|||+.+. +++..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3567889999999999999974 6999999999
Q ss_pred eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc-----eeeecCCCEE
Q 004603 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGCFI 694 (743)
Q Consensus 620 ~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g~~l 694 (743)
+|+|||++++. ++..+.+|...|.+++|+|++. +|++++.|++|+|||+++++.+..+.+|.. +.+.+++..+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999865 4788889999999999999986 777999999999999999999888887643 4567777777
Q ss_pred EEEe----cCCeEEEEecccc--------------eEEEEecCCCCEEEEEe-CCCeEEEeCCC
Q 004603 695 LNSI----FNCYLLLHRIFLN--------------LLSVSEWCNPDEISTSS-WKDSCCSHREL 739 (743)
Q Consensus 695 ~sgs----~Dg~I~vh~~~v~--------------~l~v~~~~~~~~laSgs-~DG~V~iWd~~ 739 (743)
++++ .|+.|++|+.... .+....+.++..+++++ .||.|++||-.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 7654 4789999986521 11112233466788777 59999999643
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=4.2e-24 Score=227.91 Aligned_cols=214 Identities=15% Similarity=0.212 Sum_probs=186.8
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
...++.+++.|+.|++|...++ ...++++.+|..+|.+++|+.+|..|+|++.|+.|++||+
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 3489999999999999966443 2578899999999999999999999999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~~-~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg 663 (743)
++|+++..|.. ...++|+.|+|++ +.|++|+.|+.|+.||+|+++. +..+..|-+.|..+.|-++|..+ ++.++|+
T Consensus 288 ETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~g~rF-issSDdk 364 (503)
T KOG0282|consen 288 ETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDEGRRF-ISSSDDK 364 (503)
T ss_pred ccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccCCceE-eeeccCc
Confidence 99999998864 4568999999987 8899999999999999999875 88899999999999999998855 5888999
Q ss_pred cEEEEECCCCeeeEEEec-----cCceeeecCCCEEEEEecCCeEEE-----------------EecccceEEEEecCCC
Q 004603 664 EIRYWSINNGSCAGVFKV-----CNLMPIILKGCFILNSIFNCYLLL-----------------HRIFLNLLSVSEWCNP 721 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~-----~~~i~~s~~g~~l~sgs~Dg~I~v-----------------h~~~v~~l~v~~~~~~ 721 (743)
.|+||+.+.+..+.-+.. ..++..+|.+.++++-+.|+.|.+ |......+.+.+.+++
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 999999998766544332 245778899999999999998888 6667778888888889
Q ss_pred CEEEEEeCCCeEEEeCCC
Q 004603 722 DEISTSSWKDSCCSHREL 739 (743)
Q Consensus 722 ~~laSgs~DG~V~iWd~~ 739 (743)
++|++|+.||.|.+||-+
T Consensus 445 ~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred CeEEeecCCccEEEeech
Confidence 999999999999999864
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=3e-22 Score=242.35 Aligned_cols=243 Identities=19% Similarity=0.228 Sum_probs=191.0
Q ss_pred ccccCCCCCceEEEEecCCC----cc-------cccc----Ccccc-CCCCEEEEeeCCCcEEEEecCCCCCCCCccccc
Q 004603 473 TLQHNGASSKSLLMFGSDGM----GS-------LTSA----PNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS 536 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~dg~----~~-------l~~~----~~~l~-~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~ 536 (743)
.+...++.+..+.+|..... .. +... ..... ....++++++.|++|++|+...+
T Consensus 496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~---------- 565 (793)
T PLN00181 496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS---------- 565 (793)
T ss_pred CEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC----------
Confidence 34456777888888875421 00 0000 00011 23578999999999999955332
Q ss_pred cccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEE
Q 004603 537 AEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLAT 614 (743)
Q Consensus 537 ~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaS 614 (743)
..+..+.+|.+.|++|+|+| ++.+|++|+.|++|+|||++++..+..+..| ..|.++.|++ ++.+|++
T Consensus 566 ---------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 566 ---------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred ---------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 45677889999999999997 7899999999999999999999888888755 6799999954 6899999
Q ss_pred EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC------eeeEEEeccCc----
Q 004603 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SCAGVFKVCNL---- 684 (743)
Q Consensus 615 gs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg------~~v~~~~~~~~---- 684 (743)
|+.|++|++||+++...++..+.+|...|.++.|. ++. +|++++.|++|+|||++.+ .++..+.+|..
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 99999999999998765677888999999999997 444 6779999999999999853 56778877643
Q ss_pred eeeecCCCEEEEEecCCeEEEEeccc-------------------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 685 MPIILKGCFILNSIFNCYLLLHRIFL-------------------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 685 i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------------------~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
+.+++++.+|++|+.|+.|.+|+... .+..+++..++..|++|+.||.|++|+
T Consensus 714 v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 714 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 67889999999999999999997421 123344445577999999999999997
No 34
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=2.9e-22 Score=229.23 Aligned_cols=190 Identities=17% Similarity=0.180 Sum_probs=153.2
Q ss_pred eeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC--------eEEEEEcccCCCEEEEEEcCCCCE-EEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSR-LATS 615 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspd-g~~LaSgs~Dg~V~IWd~~t~--------~~i~~l~~H~~~V~~vafsp~~~~-LaSg 615 (743)
..+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++ .++..+.+|...|.+|+|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 467788999999999999996 789999999999999999753 234578899999999999998765 5799
Q ss_pred eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----ee-----
Q 004603 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MP----- 686 (743)
Q Consensus 616 s~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~----- 686 (743)
+.|++|+|||++++.. +..+. |...|.+++|+|+|. +|++++.|+.|+|||+++++++.++.+|.. ..
T Consensus 145 S~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 145 GFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred eCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 9999999999998764 55554 567899999999987 667888899999999999999999988753 11
Q ss_pred eecCCCEEEEEecCC----eEEEEeccc--ceEE------------EEecC-CCCEEEEEeCCCeEEEeCC
Q 004603 687 IILKGCFILNSIFNC----YLLLHRIFL--NLLS------------VSEWC-NPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 687 ~s~~g~~l~sgs~Dg----~I~vh~~~v--~~l~------------v~~~~-~~~~laSgs~DG~V~iWd~ 738 (743)
+++++.+|++++.|+ .|++|+... ..+. ...+. .+.++++|+.|++|++|+-
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 337888999988774 799998762 1111 11111 2567889999999999974
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=5.4e-24 Score=218.42 Aligned_cols=239 Identities=20% Similarity=0.302 Sum_probs=194.9
Q ss_pred ccccccCCCCCceEEEEecCCCc------cccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCce
Q 004603 471 RPTLQHNGASSKSLLMFGSDGMG------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (743)
Q Consensus 471 ~~~l~~~~s~~~s~~~fs~dg~~------~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~ 544 (743)
......+|.++.++.+|...... ....+.-++.-.++++++||.|.+|++|+...+
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg------------------ 267 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG------------------ 267 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC------------------
Confidence 34556778889999999876542 122333334444689999999999999977665
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004603 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~---~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~V 621 (743)
.++.++-+|...|..+.|+ ..+++|++.|.+|.|||+.+.. +.+++.||.+.|..|.|+ .+++++++.|.+|
T Consensus 268 -e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 -EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred -chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 5677888999999999996 5689999999999999998643 345678999999999996 5699999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCce--eeecCCCEEEEEec
Q 004603 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLM--PIILKGCFILNSIF 699 (743)
Q Consensus 622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i--~~s~~g~~l~sgs~ 699 (743)
++|++.+.. +++++.+|...|.|+.+. ..++++|+.|.+||+||+..|.|++.+.+|..+ ++--+...+++|..
T Consensus 343 kvW~~st~e-fvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaY 418 (499)
T KOG0281|consen 343 KVWSTSTCE-FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 418 (499)
T ss_pred EEEecccee-eehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccc
Confidence 999999865 599999999999999885 348899999999999999999999999999653 35567889999999
Q ss_pred CCeEEEEeccc---------------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 700 NCYLLLHRIFL---------------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 700 Dg~I~vh~~~v---------------------~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
||+|++|+... .++.+-++ .-.|++++.|.+|.|||=
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 99999987431 23333333 568999999999999974
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=2.6e-22 Score=222.98 Aligned_cols=212 Identities=25% Similarity=0.374 Sum_probs=181.4
Q ss_pred CEEEEeeCC-CcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 507 RFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D-~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.+|+-|+.- +.+.+|..... ..+-...+|...|+|++++|||.+||||++||+|+|||..
T Consensus 320 DWiA~g~~klgQLlVweWqsE-------------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 320 DWIAFGCSKLGQLLVWEWQSE-------------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred CEEEEcCCccceEEEEEeecc-------------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 678777653 67777744322 3556678999999999999999999999999999999999
Q ss_pred CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCcEEEEEeCCC-
Q 004603 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS- 663 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~-~~V~sl~fsp~g~~lL~Sgs~Dg- 663 (743)
++-|+.+|.+|+..|+.+.|+..++.+++++-||+||.||+...+. .++|.... ....||+..|.|. ++++|+.|.
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGe-lV~AG~~d~F 458 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF 458 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence 9999999999999999999999999999999999999999998654 78887543 3357888889887 677777775
Q ss_pred cEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceEEEEecCCCCEEEEE
Q 004603 664 EIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTS 727 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~l~v~~~~~~~~laSg 727 (743)
.|.||++.+|+.+..+.+|.. ++|++.+..|++++.|.+|++|+... .++.+.+.+++..|+++
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence 699999999999999999854 56899999999999999999998643 35667777778999999
Q ss_pred eCCCeEEEeCCC
Q 004603 728 SWKDSCCSHREL 739 (743)
Q Consensus 728 s~DG~V~iWd~~ 739 (743)
.-||.|.+||..
T Consensus 539 TldgqItf~d~~ 550 (893)
T KOG0291|consen 539 TLDGQITFFDIK 550 (893)
T ss_pred EecceEEEEEhh
Confidence 999999999864
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=7.5e-23 Score=211.06 Aligned_cols=245 Identities=18% Similarity=0.218 Sum_probs=200.4
Q ss_pred cccCCCCCceEEEEecCCCcc---ccc-----cCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 004603 474 LQHNGASSKSLLMFGSDGMGS---LTS-----APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~dg~~~---l~~-----~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
....|+.+..+.+|+...... +.. ....+.....|+.+++.|+.|++|+....
T Consensus 165 wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n------------------- 225 (460)
T KOG0285|consen 165 WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN------------------- 225 (460)
T ss_pred eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh-------------------
Confidence 345577888888888765421 111 11124455689999999999999955333
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD 625 (743)
+.++.+.||-+.|+|++.+|.-+.|+||+.|.+++|||+++...+.++.||+..|..|.+.|....++||+.|++|++||
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 56778889999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeee---cCCCEEEEEecCCe
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPII---LKGCFILNSIFNCY 702 (743)
Q Consensus 626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s---~~g~~l~sgs~Dg~ 702 (743)
++.++. ..++..|...|.+++.+|.. ++|++++.| .|+-|++..|+.+..+.+|+.+... ....++++|+++|.
T Consensus 306 l~agkt-~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~ 382 (460)
T KOG0285|consen 306 LRAGKT-MITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGS 382 (460)
T ss_pred eccCce-eEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceE
Confidence 999775 77888899999999999984 588899988 5999999999988888888764422 34568899999999
Q ss_pred EEEEeccc--------------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 703 LLLHRIFL--------------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 703 I~vh~~~v--------------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
+.+|+-.. ..++.+++..+..|++|..|.+|++|++.-
T Consensus 383 ~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 383 IMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 99976321 124555666688999999999999998753
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=5.5e-23 Score=218.58 Aligned_cols=242 Identities=19% Similarity=0.266 Sum_probs=185.9
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+...+.+..|.|... .++++|+.|-..++|..............+... .. ...+. ...+..
T Consensus 177 ~~~~V~~~~WnP~~~--------------~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~-~~---~~~~s-~~~nkd 237 (524)
T KOG0273|consen 177 HESEVFICAWNPLRD--------------GLLASGSGDSTARIWNLLENSNIGSTQLVLRHC-IR---EGGKS-VPSNKD 237 (524)
T ss_pred CCCceEEEecCchhh--------------hhhhccCCccceeeeeehhhccccchhhhhhhh-hh---hhccc-CCccCC
Confidence 556677778887543 478999999999999665421111000000000 00 00000 112346
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------- 630 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~------- 630 (743)
|++++|+.+|.+||+|+.||.++||+.. +..+.+|..|+++|.++.|+.+|++|++++.|+++.+||..++.
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 9999999999999999999999999964 67888999999999999999999999999999999999985432
Q ss_pred ---------------------------------eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE
Q 004603 631 ---------------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (743)
Q Consensus 631 ---------------------------------~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~ 677 (743)
.++.++.+|.+.|.+|.|+|.|. +|++|+.|++++||.+....+..
T Consensus 317 ~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 317 HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred ccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCcchh
Confidence 14667889999999999999986 88899999999999999998888
Q ss_pred EEeccCc----eeeecCC---------CEEEEEecCCeEEEEeccc------------ceEEEEecCCCCEEEEEeCCCe
Q 004603 678 VFKVCNL----MPIILKG---------CFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDS 732 (743)
Q Consensus 678 ~~~~~~~----i~~s~~g---------~~l~sgs~Dg~I~vh~~~v------------~~l~v~~~~~~~~laSgs~DG~ 732 (743)
.+..|+. +.++|+| ..+++++.|++|++|+... .+.++.+.+++.++++|+.||.
T Consensus 396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 8888762 4455544 4699999999999987542 3455566666899999999999
Q ss_pred EEEeCCCc
Q 004603 733 CCSHRELY 740 (743)
Q Consensus 733 V~iWd~~~ 740 (743)
|.+|++..
T Consensus 476 V~iws~~~ 483 (524)
T KOG0273|consen 476 VHIWSTKT 483 (524)
T ss_pred eEeccccc
Confidence 99998753
No 39
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=229.21 Aligned_cols=242 Identities=14% Similarity=0.172 Sum_probs=186.0
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCC----------------------------
Q 004603 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---------------------------- 528 (743)
Q Consensus 477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~---------------------------- 528 (743)
.+...+-++.|++|| +|||+|+.|+.|+||...+.+.
T Consensus 265 ah~gaIw~mKFS~DG---------------KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~ 329 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG---------------KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE 329 (712)
T ss_pred ccCCcEEEEEeCCCC---------------ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc
Confidence 455677788899988 6999999999999997766110
Q ss_pred ----CCCc---------cccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc
Q 004603 529 ----PRDR---------VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (743)
Q Consensus 529 ----~~~~---------~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~ 595 (743)
++.. ...+....-.+..++++.+.||++.|.+|.||. ..+|++++.|++||||++...+|+.+|.
T Consensus 330 ~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~- 407 (712)
T KOG0283|consen 330 EKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS- 407 (712)
T ss_pred ccccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-
Confidence 0000 011122222345567899999999999999995 4589999999999999999999999995
Q ss_pred cCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603 596 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 596 H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~ 674 (743)
|.+.|+||+|+| |.++|++|+-|+.||||++.... +.........|+++||.|+|.. .+.|+.+|.+++|+.+..+
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCe
Confidence 999999999999 78999999999999999998744 3444445588999999999875 4589999999999999777
Q ss_pred eeEEEec------------cCceeeec-CCCEEEEEecCCeEEEEeccc--------------ceEEEEecCCCCEEEEE
Q 004603 675 CAGVFKV------------CNLMPIIL-KGCFILNSIFNCYLLLHRIFL--------------NLLSVSEWCNPDEISTS 727 (743)
Q Consensus 675 ~v~~~~~------------~~~i~~s~-~g~~l~sgs~Dg~I~vh~~~v--------------~~l~v~~~~~~~~laSg 727 (743)
....+.. .+.+.+.| +...|++.+.|..|+|.+... .-+...+..++.+|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 6554432 13344443 333688999999999977621 11333444568999999
Q ss_pred eCCCeEEEeCC
Q 004603 728 SWKDSCCSHRE 738 (743)
Q Consensus 728 s~DG~V~iWd~ 738 (743)
+.|..|++|+.
T Consensus 565 seDs~VYiW~~ 575 (712)
T KOG0283|consen 565 SEDSWVYIWKN 575 (712)
T ss_pred ecCceEEEEeC
Confidence 99999999985
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=4.8e-22 Score=220.95 Aligned_cols=212 Identities=17% Similarity=0.262 Sum_probs=178.6
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
.++++|+.|++|++|+...+ -++.++..|+..|+.+.|+..|+.++++|-||+|+.||+..
T Consensus 363 q~iaTG~eDgKVKvWn~~Sg-------------------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSG-------------------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred cEEEeccCCCcEEEEeccCc-------------------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 69999999999999955433 57889999999999999999999999999999999999999
Q ss_pred CeEEEEEcccC-CCEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 587 FTVKSTLEEHT-QWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 587 ~~~i~~l~~H~-~~V~~vafsp~~~~LaSgs~Dg-~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
.+..++|.... ....||+..|.|.+++.|+.|. .|.||++.++.. +-.+.||+++|.+++|+|++. +|+++|.|.+
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkT 501 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSPDGS-LLASGSWDKT 501 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEccccC-eEEeccccce
Confidence 99999997643 3467899999999999988876 599999999876 899999999999999999987 8889999999
Q ss_pred EEEEECCCC-eeeEEE---eccCceeeecCCCEEEEEecCCeEEEEeccc------------------------------
Q 004603 665 IRYWSINNG-SCAGVF---KVCNLMPIILKGCFILNSIFNCYLLLHRIFL------------------------------ 710 (743)
Q Consensus 665 IrvWDl~tg-~~v~~~---~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v------------------------------ 710 (743)
||+||+-.. ..+.++ .....+.|.|+|.-|++.+.||.|.+|+...
T Consensus 502 VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~ 581 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK 581 (893)
T ss_pred EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence 999998643 233333 3445688999999999999999999976421
Q ss_pred --ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 711 --NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 711 --~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
....++...++..|++||....|++|+-.
T Consensus 582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 582 GKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred CCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 11223444558899999999999999743
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=1.1e-21 Score=237.43 Aligned_cols=231 Identities=13% Similarity=0.195 Sum_probs=177.5
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
...+..+.|++++ +++++|+.|+.|++|+........ .. ....+..+.+ ...|
T Consensus 483 ~~~V~~i~fs~dg---------------~~latgg~D~~I~iwd~~~~~~~~----------~~-~~~~~~~~~~-~~~v 535 (793)
T PLN00181 483 SNLVCAIGFDRDG---------------EFFATAGVNKKIKIFECESIIKDG----------RD-IHYPVVELAS-RSKL 535 (793)
T ss_pred CCcEEEEEECCCC---------------CEEEEEeCCCEEEEEECCcccccc----------cc-cccceEEecc-cCce
Confidence 4455666677665 689999999999999754311000 00 0011222333 4579
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 559 ~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
.+++|++ ++.+|++|+.|++|+|||+.+++.+..+.+|...|++++|+| ++.+|+||+.|++|++||++++.. +..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEE
Confidence 9999987 578999999999999999999999999999999999999997 788999999999999999998654 6777
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe-eeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc-
Q 004603 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL- 710 (743)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~-~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v- 710 (743)
..+ ..|.++.|++....+|++|+.|+.|++||+++++ .+..+.+|.. +.|. ++.+|++++.|++|++|+...
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 654 6799999976655688899999999999999865 4566666643 4454 788999999999999998641
Q ss_pred ---------ce--------EEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 711 ---------NL--------LSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 711 ---------~~--------l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.. ..+....++.+|++|+.|++|++|+..
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 01 122333447899999999999999853
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.89 E-value=1e-21 Score=211.24 Aligned_cols=147 Identities=27% Similarity=0.463 Sum_probs=133.3
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004603 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (743)
Q Consensus 508 ~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~ 587 (743)
.+++|+.|+.|.+| .+..++...+++.|+.-|.|++|+|||.+|+|++.||+|.|||-.++
T Consensus 162 Ri~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 162 RIATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred EEEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence 56899999999999 78888999999999999999999999999999999999999999999
Q ss_pred eEEEEEc---ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---------------------------------
Q 004603 588 TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------------------------- 631 (743)
Q Consensus 588 ~~i~~l~---~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~--------------------------------- 631 (743)
+.+..|. +|.+.|++++|+||+..|+|++.|+++||||+.+.+.
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 9999998 8999999999999999999999999999999875432
Q ss_pred ---------eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603 632 ---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 632 ---------~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~ 674 (743)
++.++.||...|+++..+|++. .|++|+.||.|.-||+.++.
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCcc
Confidence 2345568999999999999996 55699999999999987654
No 43
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=2.8e-21 Score=219.70 Aligned_cols=210 Identities=14% Similarity=0.162 Sum_probs=165.4
Q ss_pred cCCCCCceEEEEec-CCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004603 476 HNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (743)
Q Consensus 476 ~~~s~~~s~~~fs~-dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (743)
..+...+..+.|+| ++ .+|++|+.|++|++|+....... ......+..+.+|
T Consensus 72 ~GH~~~V~~v~fsP~d~---------------~~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~gH 124 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDP---------------QKLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQGH 124 (493)
T ss_pred eCCCCCEEEEEEcCCCC---------------CEEEEEeCCCEEEEEecCCCccc------------cccCcceEEecCC
Confidence 34456677777877 33 58999999999999977653210 0112356778999
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 004603 555 TSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (743)
Q Consensus 555 ~~~V~siafspdg-~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l 633 (743)
...|.+|+|+|++ ++|++|+.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.|++|++||++++.. +
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v 203 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-V 203 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-E
Confidence 9999999999975 6999999999999999999999999999999999999999999999999999999999998764 7
Q ss_pred EEEecCCCC-eEEEEEecCCCcEEEEE---eCCCcEEEEECCCCe-eeEEEeccC-----ceeeecCCCEEEEEe-cCCe
Q 004603 634 RTFTGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGS-CAGVFKVCN-----LMPIILKGCFILNSI-FNCY 702 (743)
Q Consensus 634 ~~l~~h~~~-V~sl~fsp~g~~lL~Sg---s~Dg~IrvWDl~tg~-~v~~~~~~~-----~i~~s~~g~~l~sgs-~Dg~ 702 (743)
..+.+|.+. +..+.|.+++..++++| +.|+.|++||+++.. ++..+..+. ...+++++.+|++++ .|+.
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~ 283 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN 283 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence 788888765 45678999877666544 357999999999754 333333221 134678999999887 5999
Q ss_pred EEEEecccceE
Q 004603 703 LLLHRIFLNLL 713 (743)
Q Consensus 703 I~vh~~~v~~l 713 (743)
|++|+.....+
T Consensus 284 Iriwdl~~~~~ 294 (493)
T PTZ00421 284 IRCFELMNERL 294 (493)
T ss_pred EEEEEeeCCce
Confidence 99998765443
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=6.1e-21 Score=195.82 Aligned_cols=211 Identities=26% Similarity=0.448 Sum_probs=175.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.+++++++.|+.|++|+.... .....+..|...|.+++|+++++++++++.|+.|++||++
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETG-------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcc-------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 368899999999999965432 3455667888899999999999999999889999999999
Q ss_pred CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I 665 (743)
+++.+..+..|...|.+++|+|++.++++++.|+.|++||++++.. +..+..|...|.+++|+|++..++ +++.|+.|
T Consensus 124 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~i 201 (289)
T cd00200 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTI 201 (289)
T ss_pred CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcCEEE-EecCCCcE
Confidence 9999999999999999999999988888888899999999987554 777888998999999999986555 66669999
Q ss_pred EEEECCCCeeeEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc------------ceEEEEecCCCCEEEEEeC
Q 004603 666 RYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSW 729 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~l~v~~~~~~~~laSgs~ 729 (743)
++||++.++.+..+..+ ..+.+++++.++++++.|+.|.+|+... ....+.+..++..+++++.
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC
Confidence 99999998888877544 3467888888999888899999987641 1223334444679999999
Q ss_pred CCeEEEeC
Q 004603 730 KDSCCSHR 737 (743)
Q Consensus 730 DG~V~iWd 737 (743)
||.|++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 99999997
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=2.9e-22 Score=203.19 Aligned_cols=195 Identities=19% Similarity=0.306 Sum_probs=170.1
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~-t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW 624 (743)
.++..+.+|++.|+++.|+|+|.+||||+.|..|.+|++. ..+-..++++|++.|..+.|.+++..|++++.|++|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4556678999999999999999999999999999999964 455667888999999999999999999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEecCC
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~Dg 701 (743)
|+++++. ++.+++|.+.|++++-+.-|..++++++.|+++|+||+|+..+++++.. .+++.|...+.-+++|+-|+
T Consensus 118 D~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred eccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 9999775 8999999999999997777888999999999999999999999888843 35678889999999999999
Q ss_pred eEEEEeccc------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCcc
Q 004603 702 YLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHRELYL 741 (743)
Q Consensus 702 ~I~vh~~~v------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~~ 741 (743)
.|++|+..- ....+.....+.++.+-+-|.+|++||-+++
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 999998721 2233344444789999999999999998765
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-21 Score=194.43 Aligned_cols=232 Identities=14% Similarity=0.138 Sum_probs=194.9
Q ss_pred ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee
Q 004603 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (743)
.+...+.++.+-+.|+.+| .+|.+++.|.++.+|.+.++ ..+.++.
T Consensus 4 i~l~GHERplTqiKyN~eG---------------DLlFscaKD~~~~vw~s~nG-------------------erlGty~ 49 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREG---------------DLLFSCAKDSTPTVWYSLNG-------------------ERLGTYD 49 (327)
T ss_pred cccccCccccceEEecCCC---------------cEEEEecCCCCceEEEecCC-------------------ceeeeec
Confidence 3445567788888898888 58999999999999977665 5678999
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--------------------------------------
Q 004603 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------------------------------------- 594 (743)
Q Consensus 553 ~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~-------------------------------------- 594 (743)
+|++.|+||+.+-+.++++||+.|.+++|||+++|+.+..++
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD 129 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence 999999999999999999999999999999999988765542
Q ss_pred ---------------ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE
Q 004603 595 ---------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 595 ---------------~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg 659 (743)
.+...|+.+-|.|-+..|++|..||.|..||++++...+.....|...|++++|+++.. +++++
T Consensus 130 ~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~ 208 (327)
T KOG0643|consen 130 DSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITG 208 (327)
T ss_pred ChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEec
Confidence 24456788889999999999999999999999998887888888999999999999976 66799
Q ss_pred eCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCC----------------------------eEEEEec
Q 004603 660 DNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNC----------------------------YLLLHRI 708 (743)
Q Consensus 660 s~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg----------------------------~I~vh~~ 708 (743)
+.|.+-++||+++-++++++... ++.+++|.-.+++.|+.-. .++-|-.
T Consensus 209 s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG 288 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG 288 (327)
T ss_pred ccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc
Confidence 99999999999999999999864 4567888777777765422 2333778
Q ss_pred ccceEEEEecCCCCEEEEEeCCCeEEE--eCCCcc
Q 004603 709 FLNLLSVSEWCNPDEISTSSWKDSCCS--HRELYL 741 (743)
Q Consensus 709 ~v~~l~v~~~~~~~~laSgs~DG~V~i--Wd~~~~ 741 (743)
.++.+++.+. +...+||+.||.|++ +|..|+
T Consensus 289 PINsvAfhPd--GksYsSGGEDG~VR~h~Fd~~YF 321 (327)
T KOG0643|consen 289 PINSVAFHPD--GKSYSSGGEDGYVRLHHFDSNYF 321 (327)
T ss_pred CcceeEECCC--CcccccCCCCceEEEEEeccchh
Confidence 8888988877 679999999999988 465554
No 47
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.89 E-value=1e-21 Score=194.66 Aligned_cols=214 Identities=21% Similarity=0.302 Sum_probs=179.0
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.-+|+++++|-+|++|-+. +..+.+++....+.|+.+...||++.||+|+. -.||+||++
T Consensus 10 ~viLvsA~YDhTIRfWqa~-------------------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQAL-------------------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehh-------------------cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEcc
Confidence 3588999999999999443 34677888888888999999999999999985 469999998
Q ss_pred CCe--EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC
Q 004603 586 SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 586 t~~--~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg 663 (743)
+.+ ++.+|++|+..|++|.|..+|+.++||+.||++||||+|... |-+.|. |.++|++|..+|+...+| +|..+|
T Consensus 70 S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~~-~~spVn~vvlhpnQteLi-s~dqsg 146 (311)
T KOG0315|consen 70 SNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNYQ-HNSPVNTVVLHPNQTELI-SGDQSG 146 (311)
T ss_pred CCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cchhcc-CCCCcceEEecCCcceEE-eecCCC
Confidence 754 689999999999999999999999999999999999999844 345554 789999999999976555 999999
Q ss_pred cEEEEECCCCeeeEEEecc-----CceeeecCCCEEEEEecCCeEEEEeccc------------------ceEEEEecCC
Q 004603 664 EIRYWSINNGSCAGVFKVC-----NLMPIILKGCFILNSIFNCYLLLHRIFL------------------NLLSVSEWCN 720 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~~-----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v------------------~~l~v~~~~~ 720 (743)
.|+|||+....|.+.+-.. ..+.+.++|.+++.+...|+..+|+... ..+..-..++
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence 9999999998777666432 4467889999999999999999987543 1233334556
Q ss_pred CCEEEEEeCCCeEEEeCCCccc
Q 004603 721 PDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 721 ~~~laSgs~DG~V~iWd~~~~~ 742 (743)
..+|+++|.|.+|+||+.+-+|
T Consensus 227 ~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 227 VKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred CcEEEeecCCceEEEEecCCce
Confidence 8899999999999999876554
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=1.4e-20 Score=193.01 Aligned_cols=226 Identities=25% Similarity=0.374 Sum_probs=186.6
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+...+.++.|++++ +++++++.|+.+.+|+.... .....+..|...
T Consensus 8 h~~~i~~~~~~~~~---------------~~l~~~~~~g~i~i~~~~~~-------------------~~~~~~~~~~~~ 53 (289)
T cd00200 8 HTGGVTCVAFSPDG---------------KLLATGSGDGTIKVWDLETG-------------------ELLRTLKGHTGP 53 (289)
T ss_pred cCCCEEEEEEcCCC---------------CEEEEeecCcEEEEEEeeCC-------------------CcEEEEecCCcc
Confidence 34567788888865 58899999999999965433 145566789999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
|.++.|++++++|++++.|+.|++||+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+++.. .+..+.
T Consensus 54 i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~ 132 (289)
T cd00200 54 VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLR 132 (289)
T ss_pred eeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEec
Confidence 9999999999999999999999999999888888899999999999999998888888889999999999755 477778
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc---
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL--- 710 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~~v--- 710 (743)
.|...|.+++|+|++. ++++++.|+.|++||+++++++..+..+. .+.+++++.++++++.|+.|.+|+...
T Consensus 133 ~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 133 GHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred cCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence 8999999999999854 66677779999999999998888887653 477889999999999999999987642
Q ss_pred ---------ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 711 ---------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 711 ---------~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
....+.+..++.++++++.||.|++||..
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 12223333335677777779999999864
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.5e-22 Score=204.97 Aligned_cols=184 Identities=18% Similarity=0.386 Sum_probs=164.7
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW 582 (743)
.+.+.+|++++.|.+|+.|+...+ -++.++.+|...|.-++.+.||.++|+|+.|.+|++|
T Consensus 202 ~P~gd~ilS~srD~tik~We~~tg-------------------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 202 LPLGDHILSCSRDNTIKAWECDTG-------------------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred EecCCeeeecccccceeEEecccc-------------------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 334479999999999999955443 5788999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcccCCCEEEEEEcCC----------C-----CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 004603 583 CTESFTVKSTLEEHTQWITDVRFSPS----------L-----SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (743)
Q Consensus 583 d~~t~~~i~~l~~H~~~V~~vafsp~----------~-----~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~ 647 (743)
-+.++.+...+++|.-.|.|++|.|. + .++++++.|++||+||+.++. |+.++.+|...|.+++
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLFTLVGHDNWVRGVA 341 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEEEEecccceeeeeE
Confidence 99999999999999999999999872 2 488999999999999999975 5999999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEe
Q 004603 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 648 fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~ 707 (743)
|+|.|+ +|+||.+|++|||||+++++|.+++..|.. +.|+.+..|+++|+.|.++++|.
T Consensus 342 f~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 342 FSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999987 555999999999999999999999998754 55667788999999999999985
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=1.2e-21 Score=203.89 Aligned_cols=209 Identities=21% Similarity=0.255 Sum_probs=163.6
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCC-CCCCccc-----cccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004603 504 DMDRFVDDGSLDDNVESFLSPDDA-DPRDRVG-----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (743)
Q Consensus 504 ~~~~~l~sGs~D~~V~iw~s~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg 577 (743)
.....+++||+|.++++|....+. +...... .-.......+..++.++.||+.+|.+|.|++ ...+++++.|.
T Consensus 203 ~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDH 281 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDH 281 (423)
T ss_pred CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccc
Confidence 345788999999999999833222 1111111 1111222344567889999999999999997 67899999999
Q ss_pred cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCcE
Q 004603 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDL 655 (743)
Q Consensus 578 ~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~h~~~V~sl~fsp~g~~l 655 (743)
+|++||+.++..+.++.+ ...+.|+.++|..++|++|+.|..||+||.|++. .....|.+|.+.|.++.|+|...+.
T Consensus 282 TIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~ 360 (423)
T KOG0313|consen 282 TIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQ 360 (423)
T ss_pred eEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceE
Confidence 999999999999888876 4568999999999999999999999999999864 4467899999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCe-eeEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEEEEecCCCCEEEEEeCCCeEE
Q 004603 656 LCSCDNNSEIRYWSINNGS-CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734 (743)
Q Consensus 656 L~Sgs~Dg~IrvWDl~tg~-~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v~~~~~~~~laSgs~DG~V~ 734 (743)
|++++.|+++++||+|+.+ .+..+.+|. .+++++.+.. +.+|++||.|.+|+
T Consensus 361 ~~S~S~D~t~klWDvRS~k~plydI~~h~--------------------------DKvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 361 LVSGSYDNTVKLWDVRSTKAPLYDIAGHN--------------------------DKVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred EEEEecCCeEEEEEeccCCCcceeeccCC--------------------------ceEEEEeccC-CceEEeccCcceEE
Confidence 9999999999999999876 666666652 2333344332 56788888888888
Q ss_pred EeCCCcc
Q 004603 735 SHRELYL 741 (743)
Q Consensus 735 iWd~~~~ 741 (743)
|+....+
T Consensus 414 i~~~~~~ 420 (423)
T KOG0313|consen 414 IFKGSPI 420 (423)
T ss_pred Eeccccc
Confidence 8776544
No 51
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=2.3e-21 Score=221.04 Aligned_cols=209 Identities=20% Similarity=0.280 Sum_probs=179.0
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEE-eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
+.++.+|+.|.++++|+... ...+.. +.+|.+.|.+++|..-+.++++|+.|++++|||+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~-------------------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNN-------------------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeeccc-------------------ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 57899999999999994433 345555 9999999999999887889999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
.++.+..++.+|...|.++...+ .++++|+.|.+|++|++.++.. +.++.+|...|.++.++ ..++++|+.|++
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD---EPLLVSGSYDGT 352 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec---CCEEEEEecCce
Confidence 99999999999999999998754 5788899999999999998664 99999999999999998 337889999999
Q ss_pred EEEEECCCCeeeEEEeccCc--eeeecCC-CEEEEEecCCeEEEEecccc--eEE---------EEecCCCCEEEEEeCC
Q 004603 665 IRYWSINNGSCAGVFKVCNL--MPIILKG-CFILNSIFNCYLLLHRIFLN--LLS---------VSEWCNPDEISTSSWK 730 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~~~~~--i~~s~~g-~~l~sgs~Dg~I~vh~~~v~--~l~---------v~~~~~~~~laSgs~D 730 (743)
|+|||+++++|++++.+|+. .++..++ ..+++|+.|++|++|+.... ++. .........+++++.|
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSAD 432 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEecccc
Confidence 99999999999999999876 3455677 99999999999999998765 111 1112226789999999
Q ss_pred CeEEEeCCC
Q 004603 731 DSCCSHREL 739 (743)
Q Consensus 731 G~V~iWd~~ 739 (743)
++|++||..
T Consensus 433 ~~Ik~WD~~ 441 (537)
T KOG0274|consen 433 GTIKLWDAE 441 (537)
T ss_pred ccEEEeecc
Confidence 999999754
No 52
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=9.8e-22 Score=217.18 Aligned_cols=237 Identities=20% Similarity=0.245 Sum_probs=188.3
Q ss_pred cccCCCCCceEEEEecCCCcc-----------ccccCccccCCCC-EEEEeeCCCcEEEEecCCCCCCCCccccccccCC
Q 004603 474 LQHNGASSKSLLMFGSDGMGS-----------LTSAPNQLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~dg~~~-----------l~~~~~~l~~~~~-~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~ 541 (743)
...+++++.+...|.+.+..- +.....+....++ .+++|+.|.+|.+| +
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~-------------------~ 87 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF-------------------K 87 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE-------------------e
Confidence 456678888888888754411 1111122222333 37889999999999 4
Q ss_pred CceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004603 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~V 621 (743)
.....++.++++|...|+|++...++. +++||.|.+++||-. +++...+.+|+..|+++++-|+. .++||+.|++|
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI 163 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI 163 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence 445578889999999999999888887 999999999999975 46667799999999999999987 89999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeee----cCCCEEEEE
Q 004603 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPII----LKGCFILNS 697 (743)
Q Consensus 622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s----~~g~~l~sg 697 (743)
|+|.- ..++++|.+|++.|..|++-+++. |+||+.||.|+.|++ +|+++..+.+|+...++ .+...++++
T Consensus 164 klWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 164 KLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST 237 (745)
T ss_pred eeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence 99985 345899999999999999999865 559999999999999 79999999999875544 678899999
Q ss_pred ecCCeEEEEecccceEE--------EEec-CCCCEEEEEeCCCeEEEeCCC
Q 004603 698 IFNCYLLLHRIFLNLLS--------VSEW-CNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 698 s~Dg~I~vh~~~v~~l~--------v~~~-~~~~~laSgs~DG~V~iWd~~ 739 (743)
++|+++++|+.....-. |+.. -..+.|++|+.||.||||...
T Consensus 238 gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 238 GEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred cCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 99999999988743221 1111 126789999999999999643
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=1.3e-21 Score=203.76 Aligned_cols=212 Identities=16% Similarity=0.221 Sum_probs=174.8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEE
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLW 582 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp---dg~~LaSgs~Dg~V~IW 582 (743)
.+++.+|++||.+++|+. +| +....+.+|+++|.+++|.- ....|++++.|.++++|
T Consensus 115 ~~~IltgsYDg~~riWd~-----------------~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-----------------KG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred CceEEEeecCCeeEEEec-----------------CC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 589999999999999933 33 56788899999999998854 23469999999999999
Q ss_pred ECCCCeE----EEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------CeeEE
Q 004603 583 CTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSLR 634 (743)
Q Consensus 583 d~~t~~~----i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~------------------------~~~l~ 634 (743)
-.+.++. +....||...|-+|+..+++.++++|+.|.+|+||+..+. +.++.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 8876543 2334599999999999999999999999999999993210 12577
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCCeEEEEeccc-
Q 004603 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFL- 710 (743)
Q Consensus 635 ~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh~~~v- 710 (743)
++.||+.+|.+|.|++. ..+++++.|.+|++||+.++.++..+.+. .++.+++....|++|+.|..+++|+...
T Consensus 255 tl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred EecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 89999999999999984 46779999999999999999998888765 4467788999999999999999976543
Q ss_pred ----------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 711 ----------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 711 ----------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
..+.|++.. .-.|++|++|++|++||.+.
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~-~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTN-EFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCC-ceEEEEEecCCeEEEEEecc
Confidence 334444432 56899999999999999763
No 54
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.6e-22 Score=223.74 Aligned_cols=189 Identities=25% Similarity=0.309 Sum_probs=157.9
Q ss_pred eeEEEee-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------------
Q 004603 546 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------- 586 (743)
Q Consensus 546 ~~~~~l~-~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t-------------------------------------- 586 (743)
.....+. +|.+.|+|+.||+||++||+||.|+.|+||.+..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4455566 8999999999999999999999999999997643
Q ss_pred ----------------------CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE
Q 004603 587 ----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (743)
Q Consensus 587 ----------------------~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~ 644 (743)
.++++.|.||++.|.++.|+.+ .+|+|++.|+|||+|++.. +.|+.+|. |.+.|+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVT 413 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVT 413 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCC-cceeeEEe-cCCeeE
Confidence 0123445799999999999976 6899999999999999997 55699997 999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEecCCeEEEEecc------------
Q 004603 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNCYLLLHRIF------------ 709 (743)
Q Consensus 645 sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~Dg~I~vh~~~------------ 709 (743)
||+|+|..+.+|++|+-||.||||++...+.+..... .+++++.|+|.+.+.|+.+|..++++..
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 9999999889999999999999999998888766654 4778999999999999999998883322
Q ss_pred ----------cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 710 ----------LNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 710 ----------v~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
|+.+-+.+.. ...|+..+.|..|+|+|.
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~-~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGD-PDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred ccCccccCceeeeeEecCCC-CCeEEEecCCCceEEEec
Confidence 3333333332 457999999999999997
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=5.4e-21 Score=218.06 Aligned_cols=241 Identities=20% Similarity=0.238 Sum_probs=193.0
Q ss_pred ccccCCCCCceEEEEecCCCccccc----cCcc-----ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCc
Q 004603 473 TLQHNGASSKSLLMFGSDGMGSLTS----APNQ-----LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~dg~~~l~~----~~~~-----l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~ 543 (743)
.....++.+..+..|+......+.. .... +...+.++++|+.|.++++|+...+
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg----------------- 281 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG----------------- 281 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-----------------
Confidence 3444566666666777655422211 1111 1223689999999999999954443
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004603 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~Vrv 623 (743)
...+.+.+|.+.|.|+.. ...++++|+.|.+|+||++.++.++.++.+|.+.|.+|..+ +.++++|+.|++|+|
T Consensus 282 --~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 282 --ECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKV 355 (537)
T ss_pred --cEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEE
Confidence 678899999999999987 45678899999999999999999999999999999999997 789999999999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEeccCcee--eecCCCEEEEEecC
Q 004603 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCNLMP--IILKGCFILNSIFN 700 (743)
Q Consensus 624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~~i~--~s~~g~~l~sgs~D 700 (743)
||+++++ |+.++.+|...|+++.+... ..+++|+.|++|++||++++ +|+.++.+|..+. +...+.+|++++.|
T Consensus 356 W~~~~~~-cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 356 WDPRTGK-CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSAD 432 (537)
T ss_pred EEhhhce-eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEecccc
Confidence 9999765 59999999999999988764 46779999999999999999 9999999997754 45788999999999
Q ss_pred CeEEEEecccce----------EEEEecCC-CCEEEEEeCCCeEEEeCCC
Q 004603 701 CYLLLHRIFLNL----------LSVSEWCN-PDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 701 g~I~vh~~~v~~----------l~v~~~~~-~~~laSgs~DG~V~iWd~~ 739 (743)
++|++|+..... ..+..... ...+++++.||++++||-+
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecc
Confidence 999999754311 11111111 2689999999999999865
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.4e-21 Score=204.65 Aligned_cols=213 Identities=19% Similarity=0.275 Sum_probs=172.4
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEE
Q 004603 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAV 580 (743)
Q Consensus 502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~ 580 (743)
+...++++++|...|.|++|+. .+-..+..+.+|+.+|..+.|+| ++..|++|++|+.++
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~-------------------k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDM-------------------KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred eecCCeEEEccCCcCcEEEecc-------------------ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 3444589999999999999942 11234567789999999999999 667889999999999
Q ss_pred EEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE
Q 004603 581 LWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 581 IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg 659 (743)
+||+.+......+.+|++.|.|.+|+|- +..++||+.||+||+||++.....+.++. |..+|.++.|-|.|. +++++
T Consensus 137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-~iasA 214 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-LIASA 214 (487)
T ss_pred EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-EEEEc
Confidence 9999998877789999999999999994 66899999999999999998755466665 899999999999976 66677
Q ss_pred eCCCcEEEEECCCC-eeeEEEe----ccCceeeecCCCEEEEEecCCeEEEEe-----------cccceEEEEecCCCCE
Q 004603 660 DNNSEIRYWSINNG-SCAGVFK----VCNLMPIILKGCFILNSIFNCYLLLHR-----------IFLNLLSVSEWCNPDE 723 (743)
Q Consensus 660 s~Dg~IrvWDl~tg-~~v~~~~----~~~~i~~s~~g~~l~sgs~Dg~I~vh~-----------~~v~~l~v~~~~~~~~ 723 (743)
+ ...|+|||+-+| +.+..+. ..+++.+..++..|++|+.|+.|++++ .+...+++...++...
T Consensus 215 g-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 215 G-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQT 293 (487)
T ss_pred C-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCce
Confidence 7 457999999965 4443333 235677778999999999999999944 4455566666666789
Q ss_pred EEEEeCCCeEEEe
Q 004603 724 ISTSSWKDSCCSH 736 (743)
Q Consensus 724 laSgs~DG~V~iW 736 (743)
++.|-.||.+.+=
T Consensus 294 ~viGmsnGlv~~r 306 (487)
T KOG0310|consen 294 VVIGMSNGLVSIR 306 (487)
T ss_pred EEEecccceeeee
Confidence 9999999988764
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=1.8e-21 Score=197.62 Aligned_cols=217 Identities=16% Similarity=0.240 Sum_probs=169.4
Q ss_pred cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC
Q 004603 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (743)
Q Consensus 476 ~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (743)
..+...+++-.|++|| .++++|+.|..|++++...-.... .............-..++++..|.
T Consensus 109 t~HK~~cR~aafs~DG---------------~lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDG---------------SLVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred eecccceeeeeeCCCC---------------cEEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhcc
Confidence 3455677888899988 599999999999999765322111 111111111222235688999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~--~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l 633 (743)
+.|+++.|+|....|++|+.|++|++||+......+.++ .....|.++.|||.|.+|+.|....++|+||+.+..+.+
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence 999999999999999999999999999987533222222 245689999999999999999999999999999865433
Q ss_pred EE--EecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec-c-----CceeeecCCCEEEEEecCCeEEE
Q 004603 634 RT--FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-C-----NLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 634 ~~--l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-~-----~~i~~s~~g~~l~sgs~Dg~I~v 705 (743)
.. -..|++.|++|.+++.+. +.++++.||.|++||--+++|+.++.. | ....|..+|+|+++.+.|.++++
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred ecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence 22 236899999999999986 778999999999999999999988863 2 22458899999999999999999
Q ss_pred Eecc
Q 004603 706 HRIF 709 (743)
Q Consensus 706 h~~~ 709 (743)
|...
T Consensus 332 WEi~ 335 (430)
T KOG0640|consen 332 WEIS 335 (430)
T ss_pred eeec
Confidence 7643
No 58
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=2.3e-21 Score=206.21 Aligned_cols=210 Identities=20% Similarity=0.271 Sum_probs=162.9
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~ 585 (743)
-.+++|+.|..|++|+...... .+....+...+.+|++.|..++|++ +..+|+++++|+.+.|||++
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred eeEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 4678999999999998766531 1334566788899999999999999 77799999999999999999
Q ss_pred --CCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603 586 --SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 586 --t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D 662 (743)
+.++.....+|++.|.|++|+| ++..||||+.|++|++||+|+...++.++.+|...|..|.|+|....+|++++.|
T Consensus 259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence 5667778889999999999999 5778899999999999999999889999999999999999999999999999999
Q ss_pred CcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 663 SEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+.+.|||+..-..... .....-.|.+-+++-|+ |...+..+.|++.. +-.|+|.+.|+.+.||+-.
T Consensus 339 ~rl~vWDls~ig~eq~---~eda~dgppEllF~HgG-------H~~kV~DfsWnp~e-PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQS---PEDAEDGPPELLFIHGG-------HTAKVSDFSWNPNE-PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcEEEEeccccccccC---hhhhccCCcceeEEecC-------cccccccccCCCCC-CeEEEEecCCceEEEeecc
Confidence 9999999974221111 00000112222222222 33345556666554 5677778888888888643
No 59
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=1.3e-20 Score=195.41 Aligned_cols=155 Identities=21% Similarity=0.324 Sum_probs=139.3
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
..+++++|+.|....+|....+ .....+.+|++.|+|+.|+.||.+||||+-+|.|+||.+
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~g-------------------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTG-------------------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred CCceEEecCCCceEEEEEccCC-------------------cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 3489999999999999966554 356788999999999999999999999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
.++.....+...-..|.=+.|||.+..|+.|+.||.|-+|.+.+... ...+.||..++++=+|.|+|+.++ ++..||+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgt 213 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGT 213 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-eeEecCCCCCcccccccCCCceEE-EEecCce
Confidence 99998888876677788999999999999999999999999998644 789999999999999999988555 8999999
Q ss_pred EEEEECCCCeeeEEEe
Q 004603 665 IRYWSINNGSCAGVFK 680 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~ 680 (743)
|++||+.++.+++.+.
T Consensus 214 i~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKIT 229 (399)
T ss_pred EEEEecCCCceeEEec
Confidence 9999999998887776
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.8e-20 Score=190.41 Aligned_cols=229 Identities=18% Similarity=0.223 Sum_probs=170.0
Q ss_pred ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee
Q 004603 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (743)
.+...+.+.++.+.|+|-. +.+++.||||++|++|...+.. . ... +...
T Consensus 21 ev~~pP~DsIS~l~FSP~~--------------~~~~~A~SWD~tVR~wevq~~g---------------~-~~~-ka~~ 69 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQA--------------DNLLAAGSWDGTVRIWEVQNSG---------------Q-LVP-KAQQ 69 (347)
T ss_pred ecCCCcccchheeEecccc--------------CceEEecccCCceEEEEEecCC---------------c-ccc-hhhh
Confidence 3445566678888999833 2688999999999999775531 0 011 4456
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCC
Q 004603 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 553 ~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~--~LaSgs~Dg~VrvWDl~~~~ 630 (743)
.|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.+++|-+... .|+||++|++||+||.|...
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 799999999999999999999999999999999984 557778999999999988655 89999999999999999755
Q ss_pred eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE-E----Ee-ccCceeeecCCCEEEEEecCCeEE
Q 004603 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V----FK-VCNLMPIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 631 ~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~-~----~~-~~~~i~~s~~g~~l~sgs~Dg~I~ 704 (743)
++.++. ....|++++.-. .+++.+..++.|.+|+|+++.... . ++ -+.++++..+....+.|+-+|++.
T Consensus 149 -pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 149 -PVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred -eeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence 366665 446688777643 367777889999999997654221 1 11 124466666666667888777777
Q ss_pred EEecc-------------------------cceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 705 LHRIF-------------------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 705 vh~~~-------------------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
++.+. +..+++.+. .+.|+|+|.||++.+||...
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~--hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV--HGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc--cceEEEecCCceEEEecchh
Confidence 73222 223333333 67899999999999999753
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.3e-21 Score=203.13 Aligned_cols=232 Identities=16% Similarity=0.233 Sum_probs=181.8
Q ss_pred cccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004603 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (743)
....++..+-.+.|+++| +++|+++.|.+.-+|....+ ..++..+++.+
T Consensus 219 il~~htdEVWfl~FS~nG---------------kyLAsaSkD~Taiiw~v~~d----------------~~~kl~~tlvg 267 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNG---------------KYLASASKDSTAIIWIVVYD----------------VHFKLKKTLVG 267 (519)
T ss_pred hHhhCCCcEEEEEEcCCC---------------eeEeeccCCceEEEEEEecC----------------cceeeeeeeec
Confidence 445566777888899888 69999999999999965443 22678899999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--
Q 004603 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-- 630 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~-~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~-- 630 (743)
|..+|.-|.||||.++|++|+.|..+++||+.++.+...+. +|...+.+++|.|||..+++|+.|++|..||++...
T Consensus 268 h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~ 347 (519)
T KOG0293|consen 268 HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG 347 (519)
T ss_pred ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh
Confidence 99999999999999999999999999999999999887764 345789999999999999999999999999975311
Q ss_pred --------------------eeEEE------------------EecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603 631 --------------------YSLRT------------------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 631 --------------------~~l~~------------------l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t 672 (743)
..+.. +.....+|++++.+.+++.+|+ .-.+.+|++||+..
T Consensus 348 ~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv-nL~~qei~LWDl~e 426 (519)
T KOG0293|consen 348 NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV-NLQDQEIHLWDLEE 426 (519)
T ss_pred cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE-EcccCeeEEeecch
Confidence 00000 1123356888888888876664 44577899999998
Q ss_pred CeeeEEEeccCce------eee-cCCCEEEEEecCCeEEEEecc--------------cceEEEEecCCCCEEEEEeCCC
Q 004603 673 GSCAGVFKVCNLM------PII-LKGCFILNSIFNCYLLLHRIF--------------LNLLSVSEWCNPDEISTSSWKD 731 (743)
Q Consensus 673 g~~v~~~~~~~~i------~~s-~~g~~l~sgs~Dg~I~vh~~~--------------v~~l~v~~~~~~~~laSgs~DG 731 (743)
.+.+..+.+|..- ||. .+..++++|++|+.|.||... +++++|.+.. +..+||+|.||
T Consensus 427 ~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~-p~m~ASasDDg 505 (519)
T KOG0293|consen 427 NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD-PEMFASASDDG 505 (519)
T ss_pred hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC-HHHhhccCCCC
Confidence 8888888887542 222 355789999999999997543 3445555443 68999999999
Q ss_pred eEEEeCC
Q 004603 732 SCCSHRE 738 (743)
Q Consensus 732 ~V~iWd~ 738 (743)
+|+||..
T Consensus 506 tIRIWg~ 512 (519)
T KOG0293|consen 506 TIRIWGP 512 (519)
T ss_pred eEEEecC
Confidence 9999964
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.5e-20 Score=211.62 Aligned_cols=211 Identities=15% Similarity=0.228 Sum_probs=174.4
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
.+.++|+.|..|++| ....-+++.++.||-+.|..+.|++.-.+|+++|+|-+|+||+..+
T Consensus 64 plFVSGGDDykIkVW-------------------nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 64 PLFVSGGDDYKIKVW-------------------NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS 124 (1202)
T ss_pred CeEEecCCccEEEEE-------------------ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence 689999999999999 3344567888999999999999999999999999999999999999
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC----------------------------eeEEEEec
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----------------------------YSLRTFTG 638 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~----------------------------~~l~~l~~ 638 (743)
.+++.+++||...|.|..|||....++|+|-|-+|||||+.--+ .....+.|
T Consensus 125 r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 99999999999999999999999999999999999999984210 12346789
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee--eEEEecc----CceeeecCCCEEEEEecCCeEEEEecccce
Q 004603 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFLNL 712 (743)
Q Consensus 639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~--v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~ 712 (743)
|...|+-++|||.-+ +++||+.|..|++|-+..-+. +.+.++| +++-|+|.-..|++.++|++|+||+..-+.
T Consensus 205 HDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred cccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 999999999999866 888999999999999875431 2233333 567799999999999999999999875421
Q ss_pred -----------EEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 713 -----------LSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 713 -----------l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
+.+-...+..-++.+++|+-+.||+
T Consensus 284 ~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 284 SVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred ceeeeeccCCeEEEEEecCCcceeeeecCCceEEEE
Confidence 1112222345678888888888875
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.86 E-value=7.5e-22 Score=195.52 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=191.8
Q ss_pred cccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEe
Q 004603 472 PTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (743)
Q Consensus 472 ~~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 551 (743)
+..++.+++++.-+.|++ +.+..-||.+++.|++-.+- .+.+..-+.+|
T Consensus 7 pl~c~ghtrpvvdl~~s~------------itp~g~flisa~kd~~pmlr-------------------~g~tgdwigtf 55 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSP------------ITPDGYFLISASKDGKPMLR-------------------NGDTGDWIGTF 55 (334)
T ss_pred ceEEcCCCcceeEEeccC------------CCCCceEEEEeccCCCchhc-------------------cCCCCCcEEee
Confidence 455667778888888887 34455789999988775544 45555678999
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004603 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 552 ~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~ 631 (743)
.+|.+.|.++..+.+..+-|+++.|-+.+|||.-++..+..|. |...|.+++|+.|.++|+||+.++.+||||+..++.
T Consensus 56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A 134 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA 134 (334)
T ss_pred eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCC
Confidence 9999999999999999999999999999999999999988885 889999999999999999999999999999999888
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc-----------------------------
Q 004603 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----------------------------- 682 (743)
Q Consensus 632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----------------------------- 682 (743)
+...+.+|.+.|..+.|+.....+| ++..|++||+||.++++.+.++...
T Consensus 135 pp~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred CchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccc
Confidence 8999999999999999998877666 6688999999999999887766421
Q ss_pred --------------CceeeecCCCEEEEEecCCeEEEEec-------------ccceEEEEecCCCCEEEEEeCCCeEEE
Q 004603 683 --------------NLMPIILKGCFILNSIFNCYLLLHRI-------------FLNLLSVSEWCNPDEISTSSWKDSCCS 735 (743)
Q Consensus 683 --------------~~i~~s~~g~~l~sgs~Dg~I~vh~~-------------~v~~l~v~~~~~~~~laSgs~DG~V~i 735 (743)
+...++|+..++++|++|..+...+. ...+.++.+.+++...++||.||+|++
T Consensus 214 sf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 214 SFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred cccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 11234466677888888887776332 123445555666889999999999999
Q ss_pred eCCC
Q 004603 736 HREL 739 (743)
Q Consensus 736 Wd~~ 739 (743)
|...
T Consensus 294 WQt~ 297 (334)
T KOG0278|consen 294 WQTT 297 (334)
T ss_pred EEec
Confidence 9653
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.4e-21 Score=192.59 Aligned_cols=183 Identities=22% Similarity=0.266 Sum_probs=157.5
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~ 585 (743)
+.++++|||++||+|+... ...+.++.+|...|+...|+| ..++|++++.|+++++||++
T Consensus 118 ~~~ltsSWD~TiKLW~~~r-------------------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDPNR-------------------PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR 178 (311)
T ss_pred eeEEeeccCCceEeecCCC-------------------CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence 4556669999999994433 356778999999999999999 78899999999999999998
Q ss_pred CCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 586 SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
.......+..|...|.|+.|+. +...|+||+.|+.||+||+++-+.++..+.+|.-.|..|.|+|....+|++|+.|-+
T Consensus 179 ~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 179 SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred CCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence 7544445899999999999988 577899999999999999999888899999999999999999999899999999999
Q ss_pred EEEEECCC-CeeeEEEeccCceeee-----cCCCEEEEEecCCeEEEEec
Q 004603 665 IRYWSINN-GSCAGVFKVCNLMPII-----LKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 665 IrvWDl~t-g~~v~~~~~~~~i~~s-----~~g~~l~sgs~Dg~I~vh~~ 708 (743)
+||||... ..++.++..|+.+.+. .++.++++.+-|..+.||+.
T Consensus 259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 259 VRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999984 4566667777654332 26789999999999999874
No 65
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=6.2e-21 Score=212.18 Aligned_cols=191 Identities=22% Similarity=0.299 Sum_probs=162.6
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWC 583 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspd-g~~LaSgs~Dg~V~IWd 583 (743)
.+.++++||.|++|++|...++ ......+....+|+..|.+|+++.. ..+|+++|.|+++++|+
T Consensus 376 ~g~llat~sKD~svilWr~~~~---------------~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~ 440 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNN---------------CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD 440 (775)
T ss_pred cCcEEEEecCCceEEEEEecCC---------------cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEec
Confidence 3469999999999999966332 2233456667899999999999763 45899999999999999
Q ss_pred CCCCe-----EE----EEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCc
Q 004603 584 TESFT-----VK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (743)
Q Consensus 584 ~~t~~-----~i----~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~ 654 (743)
+...+ .+ .+...|...|.||+++|+..+|+|||.|++.+||++.... .+.++.||+..|++|.|+|.. .
T Consensus 441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~d-q 518 (775)
T KOG0319|consen 441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKND-Q 518 (775)
T ss_pred CCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEecccc-c
Confidence 87521 11 1335799999999999999999999999999999999654 488999999999999999985 4
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEecccce
Q 004603 655 LLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFLNL 712 (743)
Q Consensus 655 lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v~~ 712 (743)
++++||.|++|+||.+.+..|+++|.+|++ ..|..+|..|++++.||.+++|+.....
T Consensus 519 ~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 888999999999999999999999999976 5688899999999999999999887543
No 66
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.9e-20 Score=189.79 Aligned_cols=215 Identities=15% Similarity=0.211 Sum_probs=170.2
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCC--EEEEEeCCCcEE
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAV 580 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~--~LaSgs~Dg~V~ 580 (743)
.-..+++++|+.|.+|++|+... ......+-.|.+.|++|.|.++.. .|++|++||.|.
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k-------------------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRK-------------------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred EecceeEeccCCCCcEEEEeccc-------------------hhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 33458999999999999995533 356677888999999999998664 899999999999
Q ss_pred EEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEe
Q 004603 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 581 IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs 660 (743)
+|++...+++.++++|++.|+.++.||.+++.++.+.|+.+|.||+-+++.....-..+.. +.|.|+|.|.++++.+.
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc--eeeEEcCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999999999887753333233333 44999999986665544
Q ss_pred CCCcEEEEECCCCeeeEEEecc--CceeeecCCCEEEEEecCCeEEEEecc--------------cceEEEEecCCCCEE
Q 004603 661 NNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIFNCYLLLHRIF--------------LNLLSVSEWCNPDEI 724 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~l~sgs~Dg~I~vh~~~--------------v~~l~v~~~~~~~~l 724 (743)
..|-||.+.+......+... ..+...-++.+|++|++|+.|++++.. ++.+.+-...+..+|
T Consensus 189 --~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 189 --NKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred --cEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 46999999877665544433 223344578899999999999996654 444444444446799
Q ss_pred EEEeCCCeEEEeCCCc
Q 004603 725 STSSWKDSCCSHRELY 740 (743)
Q Consensus 725 aSgs~DG~V~iWd~~~ 740 (743)
+|+|.||.|++||-+.
T Consensus 267 vTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDM 282 (362)
T ss_pred EEeccCceEEEEEccc
Confidence 9999999999998654
No 67
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=2.5e-19 Score=205.18 Aligned_cols=206 Identities=14% Similarity=0.177 Sum_probs=155.5
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+...+..+.|+|+. +.++++|+.|++|++|+...+.... ......+..+.+|...
T Consensus 73 H~~~V~~lafsP~~--------------~~lLASgS~DgtIrIWDi~t~~~~~-----------~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 73 HTSSILDLQFNPCF--------------SEILASGSEDLTIRVWEIPHNDESV-----------KEIKDPQCILKGHKKK 127 (568)
T ss_pred CCCCEEEEEEcCCC--------------CCEEEEEeCCCeEEEEECCCCCccc-----------cccccceEEeecCCCc
Confidence 44566666777643 2689999999999999876432100 0001345567899999
Q ss_pred eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 558 V~siafspdg~~-LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
|.+|+|+|++.. |++|+.|++|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++.. +.++
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-i~tl 205 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-ASSF 205 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-EEEE
Confidence 999999998875 5799999999999999988877775 667899999999999999999999999999998764 7889
Q ss_pred ecCCCCeEEEE-----EecCCCcEEEEEeCC----CcEEEEECCC-CeeeEEEeccCc----ee-e-ecCCCEEEEEecC
Q 004603 637 TGHSTTVMSLD-----FHPSKEDLLCSCDNN----SEIRYWSINN-GSCAGVFKVCNL----MP-I-ILKGCFILNSIFN 700 (743)
Q Consensus 637 ~~h~~~V~sl~-----fsp~g~~lL~Sgs~D----g~IrvWDl~t-g~~v~~~~~~~~----i~-~-s~~g~~l~sgs~D 700 (743)
.+|.+.+.+.+ |++++..++ +++.| ++|+|||+++ ++++..+..... ++ + .++|.++++|+.|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 99987654433 447766555 55545 3799999995 566666554322 11 2 3458899999999
Q ss_pred CeEEEEecccc
Q 004603 701 CYLLLHRIFLN 711 (743)
Q Consensus 701 g~I~vh~~~v~ 711 (743)
++|++|+....
T Consensus 285 ~tIr~~e~~~~ 295 (568)
T PTZ00420 285 GNCRYYQHSLG 295 (568)
T ss_pred CeEEEEEccCC
Confidence 99999987544
No 68
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.85 E-value=1.7e-21 Score=208.21 Aligned_cols=195 Identities=18% Similarity=0.284 Sum_probs=168.4
Q ss_pred eeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004603 544 TFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~V 621 (743)
..+.+.++.+|+..|+++.|.| .+.+|++|+.|+.|+||++.. ++++++|.+|..+|.+++|+.+|..|+|++.|++|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 3456788999999999999999 999999999999999999876 89999999999999999999999999999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----CceeeecCCCEEEEE
Q 004603 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNS 697 (743)
Q Consensus 622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sg 697 (743)
++||++++.+ +..|. ....++++.|+|++.++|++|+.|+.|+.||+|+++.+..+..| ..+.|.+.|.++++.
T Consensus 283 KlwDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999875 66665 34568999999999889999999999999999999988777654 558899999999999
Q ss_pred ecCCeEEEEecccce-------------EEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 698 IFNCYLLLHRIFLNL-------------LSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 698 s~Dg~I~vh~~~v~~-------------l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
++|+.++||+..+.+ -++...+.+.++++-+.|..|.++....
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence 999999999866532 1222233367899999999998886443
No 69
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=2e-20 Score=198.95 Aligned_cols=239 Identities=20% Similarity=0.325 Sum_probs=182.7
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCcccccc-ccCCCceeeeEEEeeCCCCC
Q 004603 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA-EVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~H~~~ 557 (743)
-.++.++.++++. .++.+++.|++|.-|....+.+.+....+-. -...+...++-. ++|...
T Consensus 142 ~~s~~~vals~d~---------------~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~ke 204 (479)
T KOG0299|consen 142 QLSVTSVALSPDD---------------KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKE 204 (479)
T ss_pred cCcceEEEeeccc---------------cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccce
Confidence 3455566666655 6889999999999998877654432222210 000222222222 489999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
|.|++.++||++||+|+.|..|.|||+++.+.+.+|.+|.+.|.+++|......+++++.|++|++|++..... +.++.
T Consensus 205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetly 283 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLY 283 (479)
T ss_pred eEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHh
Confidence 99999999999999999999999999999999999999999999999998888999999999999999998665 78899
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC-c--eeeecCCCEEEEEecCCeEEEEecc-----
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-L--MPIILKGCFILNSIFNCYLLLHRIF----- 709 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~-~--i~~s~~g~~l~sgs~Dg~I~vh~~~----- 709 (743)
+|.+.|.+|+....++ ++..|+.|+++++|++... ..-.|.++. . ++.-.+...+++|+.||.|.+|...
T Consensus 284 GHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred CCccceeeechhcccc-eEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCce
Confidence 9999999998776644 6767779999999999533 333455443 2 2333567789999999999997642
Q ss_pred ---------------------cceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 710 ---------------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 710 ---------------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
++.+++.+. ..++++|+|+|.|++|...
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~--sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPG--SDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred eEeeccccccCCccccccccceeeeEeccc--CceEEecCCCCceEEEEec
Confidence 233444433 5699999999999999653
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.3e-20 Score=187.96 Aligned_cols=264 Identities=18% Similarity=0.253 Sum_probs=201.1
Q ss_pred cccCCCCCceEEEEecCCCccccc------cCc--cccCCCCEEEEeeCCCcEEEEecCCCC------C-----C-----
Q 004603 474 LQHNGASSKSLLMFGSDGMGSLTS------APN--QLTDMDRFVDDGSLDDNVESFLSPDDA------D-----P----- 529 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~dg~~~l~~------~~~--~l~~~~~~l~sGs~D~~V~iw~s~~~~------~-----~----- 529 (743)
++-.++.+....+|+.+...+|.. +.+ .|+....++.++|-|++..+|...... . +
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 334456677777888776544322 222 255667899999999999999522110 0 0
Q ss_pred -CCccccccc---cCCCce-eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEE
Q 004603 530 -RDRVGRSAE---VGKGFT-FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604 (743)
Q Consensus 530 -~~~~~~~~~---~~~~~~-~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~va 604 (743)
.+.-.+..+ ..++.+ -.++..+.+|.+.|.|+.|-..|..+++++.|.+..+||+++++++..+.||....+.++
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs 321 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS 321 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence 011111111 112222 246788999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe-eeEEEec--
Q 004603 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKV-- 681 (743)
Q Consensus 605 fsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~-~v~~~~~-- 681 (743)
-+|..++++|++.|.+.|+||.+..-..+..|.||...|+++.|..+.+ +++|+.|.+|+|||+++.+ .+.+++.
T Consensus 322 tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 322 THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecCC
Confidence 9999999999999999999999976666889999999999999998754 6799999999999999754 4555554
Q ss_pred -cCceeeecCCCEEEEEecCCeEEEEecc------------------cceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 682 -CNLMPIILKGCFILNSIFNCYLLLHRIF------------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 682 -~~~i~~s~~g~~l~sgs~Dg~I~vh~~~------------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.+.+.++..+..|+...++..|++++.. +.+.+|....+-.-|++||.|..|.-|+-.
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 3446777777788888888888885543 345556555555679999999999999753
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=3.4e-20 Score=214.54 Aligned_cols=224 Identities=19% Similarity=0.279 Sum_probs=176.7
Q ss_pred CEEEEee--CCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 507 RFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 507 ~~l~sGs--~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
..+++|+ .|+.+++|....-. .........-.+.+.....|.+.|+|+.|+|||.+||+|++|+.|.||..
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl-------~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVL-------DEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred eeEecCCccccccceeecccccc-------chhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 4678999 99999999443221 11111111134567888899999999999999999999999999999986
Q ss_pred C------------------CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 004603 585 E------------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (743)
Q Consensus 585 ~------------------t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl 646 (743)
. ..+.+.++.+|...|.+++|+|++.+|++++.|++|.+||.++. .++.++.+|.+.|-.+
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGV 177 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccce
Confidence 5 13467889999999999999999999999999999999999998 5699999999999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----------CceeeecCCCEEEEEec--C--CeEEE-------
Q 004603 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----------NLMPIILKGCFILNSIF--N--CYLLL------- 705 (743)
Q Consensus 647 ~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----------~~i~~s~~g~~l~sgs~--D--g~I~v------- 705 (743)
.|+|-|. +|++=+.|++|+||.+.+..+.+.+..+ ..+.++|||.||++... . .++.|
T Consensus 178 s~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk 256 (942)
T KOG0973|consen 178 SWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK 256 (942)
T ss_pred EECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence 9999987 7789999999999998877777766543 33779999999998642 1 12222
Q ss_pred -------EecccceEEEEec---CC--------C----CEEEEEeCCCeEEEeCCC
Q 004603 706 -------HRIFLNLLSVSEW---CN--------P----DEISTSSWKDSCCSHREL 739 (743)
Q Consensus 706 -------h~~~v~~l~v~~~---~~--------~----~~laSgs~DG~V~iWd~~ 739 (743)
|...+.++.+.+. .+ + ..+|+||.|++|-||...
T Consensus 257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 6666666666442 01 1 278999999999999763
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4e-19 Score=173.73 Aligned_cols=240 Identities=19% Similarity=0.204 Sum_probs=175.4
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004603 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
..+..++.+.|+|.+ .+.+.|+...+.++.-.++-.+.+.. .+..+.......+.-+.|.+
T Consensus 30 ~dsqairav~fhp~g---------------~lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkg 90 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAG---------------GLYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKG 90 (350)
T ss_pred cchhheeeEEecCCC---------------ceEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCc
Confidence 344566677777766 57899999999999855544322211 11112222344556678999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------------------------
Q 004603 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------------------- 586 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t-------------------------------------------------- 586 (743)
.|+|.+|+|+|.+|++|+.|++|++.-...
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 999999999999999999999999873321
Q ss_pred --CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec-------CCCCeEEEEEecCCCcEEE
Q 004603 587 --FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 587 --~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~-------h~~~V~sl~fsp~g~~lL~ 657 (743)
+.....+.+|++.|.++ ++-++-.|++|+.|.+||+||++-+. |+.++.. ..+.|.+++..|.|+ +|+
T Consensus 171 ~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsgr-ll~ 247 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLA 247 (350)
T ss_pred CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCcc-eee
Confidence 11122334677777665 23356789999999999999999865 4665531 236799999999986 889
Q ss_pred EEeCCCcEEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc----------------ceEEEEe
Q 004603 658 SCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL----------------NLLSVSE 717 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~~v----------------~~l~v~~ 717 (743)
+|-.|....+||++.++.+..|..|+ ++.|+|..-|+++++.|..|++.+... +++...+
T Consensus 248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe
Confidence 99999999999999999999998774 477999999999999999999943321 2222233
Q ss_pred cCCCCEEEEEeCCCeEEEeCC
Q 004603 718 WCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 718 ~~~~~~laSgs~DG~V~iWd~ 738 (743)
.+..-.+++.+.|.++.+|--
T Consensus 328 h~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 328 HPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred cCccceeeeccCcceEEEecc
Confidence 333557889999999999963
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=1.5e-19 Score=190.78 Aligned_cols=243 Identities=14% Similarity=0.153 Sum_probs=187.1
Q ss_pred cccCCCCCceEEEEecCCCcc--------ccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 004603 474 LQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~dg~~~--------l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
....|..++..+.|.-..... .......+++....+.+++.|..|++|.....
T Consensus 233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~------------------- 293 (506)
T KOG0289|consen 233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS------------------- 293 (506)
T ss_pred cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-------------------
Confidence 444556666666665443311 11112223445578899999999999955443
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc--cCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~--H~~~V~~vafsp~~~~LaSgs~Dg~Vrv 623 (743)
.+...+..|..+|+.+..+|.|.||++++.|++..+.|++++..+..... ..-.+++.+|||||.+|.+|..|+.|+|
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 24456678999999999999999999999999999999999988766543 2245899999999999999999999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc-----CceeeecCCCEEEEEe
Q 004603 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-----NLMPIILKGCFILNSI 698 (743)
Q Consensus 624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~-----~~i~~s~~g~~l~sgs 698 (743)
||+..... +..|.+|+++|.+|.|+.+| ++|+++..|+.|++||+|..+...++... ..+.|...|.|++.++
T Consensus 374 wdlks~~~-~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 374 WDLKSQTN-VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEcCCccc-cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 99998774 88999999999999999887 57778888999999999998887777643 4578999999999998
Q ss_pred cCCeEEEEe-------c-------ccceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 699 FNCYLLLHR-------I-------FLNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 699 ~Dg~I~vh~-------~-------~v~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
.|-.|.+.. . ....-.+.+.....+++++|.|..++++.
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 887777633 1 11122233333467999999999988874
No 74
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.8e-20 Score=201.91 Aligned_cols=249 Identities=16% Similarity=0.207 Sum_probs=197.2
Q ss_pred cccCCCCCceEEEEecCCCccccccC--------------ccccCCCCEEEEeeCCCcEEEEecCCCCCCCCcccccccc
Q 004603 474 LQHNGASSKSLLMFGSDGMGSLTSAP--------------NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~dg~~~l~~~~--------------~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~ 539 (743)
..+.|+++..+..|+.+......+.. ..+..+++-+.++|.|-+|++|....+.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------------ 106 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------------ 106 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc------------
Confidence 45678899999999877654322221 1134556789999999999999665541
Q ss_pred CCCceeeeEEEeeCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCe--EEE--------EEc-ccCCCEEEEEEcC
Q 004603 540 GKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFT--VKS--------TLE-EHTQWITDVRFSP 607 (743)
Q Consensus 540 ~~~~~~~~~~~l~~H~~~V~siaf-spdg~~LaSgs~Dg~V~IWd~~t~~--~i~--------~l~-~H~~~V~~vafsp 607 (743)
..++.++..|++.|.|+++ .++..++|+||-|+.|+|||+.++. .+. .+. ||...|++++.++
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 2456778899999999999 7788999999999999999998762 222 223 8899999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCcee-
Q 004603 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMP- 686 (743)
Q Consensus 608 ~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~- 686 (743)
.+..|++|+..+.|++||.++.+. +..+.||+..|.+|..+++|..+| +++.||+||+||+...+|+.++..|....
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred cceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceE
Confidence 999999999999999999999776 788889999999999999998666 88889999999999999999999886543
Q ss_pred ---eecCCCEEEEEecCCeEEEEecccc---eEEEEecC---------CCCEEEEEeCCCeEEEeCCCcc
Q 004603 687 ---IILKGCFILNSIFNCYLLLHRIFLN---LLSVSEWC---------NPDEISTSSWKDSCCSHRELYL 741 (743)
Q Consensus 687 ---~s~~g~~l~sgs~Dg~I~vh~~~v~---~l~v~~~~---------~~~~laSgs~DG~V~iWd~~~~ 741 (743)
.+++-.++++|+.|+.|..-+.... .+.+.... ...-+.++.+|+.|+-|.....
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 4467788999999999998655542 11111111 1234588999999999987654
No 75
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.4e-20 Score=179.46 Aligned_cols=192 Identities=19% Similarity=0.266 Sum_probs=166.5
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD 625 (743)
+..+.+..|.++|..+.|+-||++.++++.|++|++|+...+.+++++.+|...|.+++.+.|...|++|+.|+.|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC--eeeEEEecc--CceeeecCCCEEEEEecCC
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKVC--NLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg--~~v~~~~~~--~~i~~s~~g~~l~sgs~Dg 701 (743)
+.+++. ++.|.+|...|+.+.|+.+.. ++++|+.|.+||+||.++. +++..+... ....+...+..|++|+.||
T Consensus 88 V~TGkv-~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 88 VNTGKV-DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG 165 (307)
T ss_pred cccCee-eeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence 999886 899999999999999998754 8889999999999999864 566666543 2345667888999999999
Q ss_pred eEEEEecccc----------eEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 702 YLLLHRIFLN----------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 702 ~I~vh~~~v~----------~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+++.+++... ..++++..++...+.++-|+++++-|..
T Consensus 166 tvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred cEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 9999776532 2334455558899999999999998764
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-19 Score=200.57 Aligned_cols=212 Identities=19% Similarity=0.254 Sum_probs=176.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
+.+|+.|..++.|.+|+... .+.+..+.+ |...|-|++|+ +..+.+|+.|+.|.++|+
T Consensus 229 G~~LavG~~~g~v~iwD~~~-------------------~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKE-------------------QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCEEEEeecCCeEEEEehhh-------------------ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 37999999999999995433 345566666 99999999997 778999999999999999
Q ss_pred CCCeEEEE-EcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEe--C
Q 004603 585 ESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--N 661 (743)
Q Consensus 585 ~t~~~i~~-l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs--~ 661 (743)
+..+.... +.+|...|..+.|++++.++|+|+.|..|.|||.... .++..+..|...|.+++|+|-...+||+|+ .
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~ 366 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA 366 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCc
Confidence 98765544 8899999999999999999999999999999999654 457888999999999999999888999864 7
Q ss_pred CCcEEEEECCCCeeeEEEeccC---ceeeecCCCEEEE--EecCCeEEEEecc------------cceEEEEecCCCCEE
Q 004603 662 NSEIRYWSINNGSCAGVFKVCN---LMPIILKGCFILN--SIFNCYLLLHRIF------------LNLLSVSEWCNPDEI 724 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~~~---~i~~s~~g~~l~s--gs~Dg~I~vh~~~------------v~~l~v~~~~~~~~l 724 (743)
|++|++||..+++++..+.... .+.+++..+-|++ |..++.|.||+.. ..++.+...+++..|
T Consensus 367 D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i 446 (484)
T KOG0305|consen 367 DRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI 446 (484)
T ss_pred ccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence 8999999999999988887654 3567887766665 4556677886542 235555566668899
Q ss_pred EEEeCCCeEEEeCCC
Q 004603 725 STSSWKDSCCSHREL 739 (743)
Q Consensus 725 aSgs~DG~V~iWd~~ 739 (743)
++|+.|.++++|+..
T Consensus 447 ~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 447 VTGAADETLRFWNLF 461 (484)
T ss_pred EEecccCcEEecccc
Confidence 999999999999853
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=197.71 Aligned_cols=210 Identities=20% Similarity=0.264 Sum_probs=175.9
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..+++|+.|..|++|... +.....+.++.+..+.|+++.|.++++.+++++.|+.+++|+++.
T Consensus 188 dtlatgg~Dr~Ik~W~v~-----------------~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVL-----------------GEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred chhhhcchhhhhhhhhcc-----------------cchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence 468999999999999442 223456778888999999999999999999999999999999999
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir 666 (743)
.....++.||++.|+++.|.-....+++|+.|.+|++||+.... |.+++- ..+.+.+|+..+ ..+++|..|++||
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVR 325 (459)
T ss_pred hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEecc---eeeeecccccceE
Confidence 99999999999999999998776669999999999999999844 455544 235567777663 3677999999999
Q ss_pred EEECCCCeeeEEEecc---CceeeecCCCEEEEEecCCeEEEEecccceEE----------------EEecCCCCEEEEE
Q 004603 667 YWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFLNLLS----------------VSEWCNPDEISTS 727 (743)
Q Consensus 667 vWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~----------------v~~~~~~~~laSg 727 (743)
+||+++..++.+...+ +.+.++++|+.|.+.+.|.++.+++.....+. +.+.+++.|+++|
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 9999999999888865 55778899999999999999999877654322 2344558899999
Q ss_pred eCCCeEEEeCC
Q 004603 728 SWKDSCCSHRE 738 (743)
Q Consensus 728 s~DG~V~iWd~ 738 (743)
|.||.|+||+.
T Consensus 406 S~dgsv~iW~v 416 (459)
T KOG0288|consen 406 SADGSVYIWSV 416 (459)
T ss_pred cCCCcEEEEEc
Confidence 99999999974
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.3e-20 Score=203.77 Aligned_cols=219 Identities=12% Similarity=0.206 Sum_probs=180.8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
++++.+|+.|+.|++|...... ..........++.|++.|.+++...+++.|+++|.|-+|++|+..
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~-------------~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDS-------------NEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred CceEEecCCCceEEEecccccc-------------CCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecc
Confidence 5799999999999999665542 111122467788999999999999999999999999999999998
Q ss_pred CC--eEEEEEcccCCCEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCCe---------eEEEEe-cCCCCeEEEEEecCC
Q 004603 586 SF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPSK 652 (743)
Q Consensus 586 t~--~~i~~l~~H~~~V~~vaf-sp~~~~LaSgs~Dg~VrvWDl~~~~~---------~l~~l~-~h~~~V~sl~fsp~g 652 (743)
.. -+..++..|++.|.|+++ .++..++|||+.|+.|.+||+.++.. ....+. |+...|++++.++.|
T Consensus 104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence 76 577889999999999999 77888999999999999999987632 122333 888999999999998
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceEEEE
Q 004603 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVS 716 (743)
Q Consensus 653 ~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~l~v~ 716 (743)
.++++|+..+.|++||.++.+.+..+.+|+. +.++.||..+++++.||+|++|+..- .+.++.
T Consensus 184 -t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~ 262 (735)
T KOG0308|consen 184 -TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ 262 (735)
T ss_pred -eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence 5888999999999999999999999999864 66889999999999999999987642 122222
Q ss_pred ecCCCCEEEEEeCCCeEEEeCC
Q 004603 717 EWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 717 ~~~~~~~laSgs~DG~V~iWd~ 738 (743)
....-..+++|+.||.|+.-|-
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred eCCCcceEEecCCCCcEEeccc
Confidence 2333568999999999887654
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=2.3e-19 Score=179.20 Aligned_cols=192 Identities=16% Similarity=0.338 Sum_probs=160.8
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (743)
Q Consensus 480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (743)
..+..+.|..+| ..+++|+.|+++.+|..... .+......++|++.|.
T Consensus 21 ~~v~Sv~wn~~g---------------~~lasgs~dktv~v~n~e~~-----------------r~~~~~~~~gh~~svd 68 (313)
T KOG1407|consen 21 QKVHSVAWNCDG---------------TKLASGSFDKTVSVWNLERD-----------------RFRKELVYRGHTDSVD 68 (313)
T ss_pred hcceEEEEcccC---------------ceeeecccCCceEEEEecch-----------------hhhhhhcccCCCcchh
Confidence 356678898888 47899999999999965443 1122234578999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-------
Q 004603 560 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------- 631 (743)
Q Consensus 560 siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~------- 631 (743)
.++|+| ...+|++++.|++|++||++.+++...+....+.| -+.|+|+|.+++.++.|..|.+.|+++.+.
T Consensus 69 ql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~ 147 (313)
T KOG1407|consen 69 QLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK 147 (313)
T ss_pred hheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc
Confidence 999998 66799999999999999999999998887554444 577999999999999999999999875321
Q ss_pred ---------------------------------eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEE
Q 004603 632 ---------------------------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (743)
Q Consensus 632 ---------------------------------~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~ 678 (743)
++.++..|...+.||.|+|+|+ +|++|+.|..|.+||+...-|++.
T Consensus 148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERC 226 (313)
T ss_pred ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhhee
Confidence 2455678999999999999987 777999999999999999999988
Q ss_pred Eecc----CceeeecCCCEEEEEecCCeEEE
Q 004603 679 FKVC----NLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 679 ~~~~----~~i~~s~~g~~l~sgs~Dg~I~v 705 (743)
+..+ ..+.|+.+|.+|+++++|..|-|
T Consensus 227 isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred eccccCceEEEEeccCcceeeccCccceEEe
Confidence 8754 56889999999999999999887
No 80
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=8.8e-20 Score=193.41 Aligned_cols=236 Identities=17% Similarity=0.180 Sum_probs=177.7
Q ss_pred cCCCCEEEEeeCCCcEEEEecCC--CCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPD--DADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKA 579 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V 579 (743)
....++++.|++|..|.+|+..- ...+....+......+....+.-..-.+|++.|.+++|+. ..+.||+||.|++|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 34468999999999999995532 1112222222211111111122233457999999999987 45689999999999
Q ss_pred EEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEE
Q 004603 580 VLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (743)
Q Consensus 580 ~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~S 658 (743)
++||+.++++..++..|.+.|.++.|+|. ..+|++|+.|++|++.|.|.....-..++ -.+.|-.++|+|...+.+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEE
Confidence 99999999999999999999999999994 77899999999999999996443222232 45779999999999989999
Q ss_pred EeCCCcEEEEECCCC-eeeEEEeccCc----eeeec-CCCEEEEEecCCeEEEEecccceE--------------EEEec
Q 004603 659 CDNNSEIRYWSINNG-SCAGVFKVCNL----MPIIL-KGCFILNSIFNCYLLLHRIFLNLL--------------SVSEW 718 (743)
Q Consensus 659 gs~Dg~IrvWDl~tg-~~v~~~~~~~~----i~~s~-~g~~l~sgs~Dg~I~vh~~~v~~l--------------~v~~~ 718 (743)
+..||+|+.+|+|.. +++.+++.|.. ++++. ...++++++.|++|++|+..+..- ++...
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999999975 89999998843 44443 456788999999999998765321 11211
Q ss_pred CC-CCEEEEEeCCCeEEEeCCC
Q 004603 719 CN-PDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 719 ~~-~~~laSgs~DG~V~iWd~~ 739 (743)
.+ ...++.||..+.++|||..
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred CCcceEEEecCccceEEEeecc
Confidence 11 4689999999999999864
No 81
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=2.7e-19 Score=199.12 Aligned_cols=234 Identities=22% Similarity=0.299 Sum_probs=183.2
Q ss_pred CCceEEEEecCCCccccc------cCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004603 480 SSKSLLMFGSDGMGSLTS------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (743)
Q Consensus 480 ~~~s~~~fs~dg~~~l~~------~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (743)
...++..|+.+...++.. ....+-+-+++++.|...|.+.+|+.... ..+.++++
T Consensus 392 a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-------------------~l~Eti~A 452 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA-------------------SLVETIRA 452 (888)
T ss_pred CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh-------------------hhhhhhhc
Confidence 345566677664422111 11224455677777777777777744322 34556779
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeE--E------EEEcccCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTV--K------STLEEHTQWITDVRFSPSLSRLATSSADRT 620 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t-----~~~--i------~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~ 620 (743)
|.+.|.+++.+||++.++|||.|++|++||..- +.. + +++ .-+..|.|++++||+++|+.+--|.+
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCe
Confidence 999999999999999999999999999999641 111 1 222 23567999999999999999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----ceeeecCCCEEEE
Q 004603 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILN 696 (743)
Q Consensus 621 VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~s 696 (743)
|+||-+++.+. ...+.||.-+|.|++.+||+. ++++||.|..|+||-+.-|.|-+++.+|. .+.|.|..-.+++
T Consensus 532 VkVyflDtlKF-flsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 532 VKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred EEEEEecceee-eeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE
Confidence 99999998665 667889999999999999976 88899999999999999999999998873 3668899999999
Q ss_pred EecCCeEEEEecc--------------cceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 697 SIFNCYLLLHRIF--------------LNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 697 gs~Dg~I~vh~~~--------------v~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
++.|+.|+-|+.. +.++++.+ ++++++|+|+|..|++|-
T Consensus 610 ~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~--~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP--NGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ecCcceEEeechhhhhhheeeccchheeeeeEEcC--CCCeEEeccCCceeEeee
Confidence 9999999998542 34444444 488999999999999993
No 82
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=7.2e-21 Score=210.95 Aligned_cols=184 Identities=20% Similarity=0.324 Sum_probs=164.7
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.+++++|++|..+.+|..... ..+..+.+|.++|.||.|+++..+|++|+.||+|++||++
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp-------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKP-------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred ceeeccCCCceeeccccccCC-------------------chhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 488999999999999933222 2333589999999999999999999999999999999999
Q ss_pred CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I 665 (743)
..+.++++.+|...+.+|.|+|-+.++++|+.|+.+++||++... |.+.+.+|...|..+.|.|+|. +++++++|.+|
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tv 178 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTV 178 (825)
T ss_pred hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCc-eeeccCCccee
Confidence 999999999999999999999999999999999999999999755 5899999999999999999987 66789999999
Q ss_pred EEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc
Q 004603 666 RYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v 710 (743)
+|||+..|+....|+.|.. +.++|....+..|+.|+++++|+...
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence 9999999999999997654 56778888899999999999998873
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.3e-19 Score=194.13 Aligned_cols=221 Identities=19% Similarity=0.265 Sum_probs=175.3
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (743)
Q Consensus 480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (743)
..++.+.|+|... .++.+++|. .+.+|... +....+++....+.|+
T Consensus 27 ~~vssl~fsp~~P-------------~d~aVt~S~--rvqly~~~-------------------~~~~~k~~srFk~~v~ 72 (487)
T KOG0310|consen 27 NSVSSLCFSPKHP-------------YDFAVTSSV--RVQLYSSV-------------------TRSVRKTFSRFKDVVY 72 (487)
T ss_pred CcceeEecCCCCC-------------CceEEeccc--EEEEEecc-------------------hhhhhhhHHhhcccee
Confidence 4666778887443 256666664 45666221 1223333444556799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004603 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 560 siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~ 638 (743)
+++|..||++||+|...|.|+|||+.+...++.+.+|+.+|..+.|+|. +..|++|++|+.+++||+.+... ...+.+
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~ 151 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSG 151 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecC
Confidence 9999999999999999999999997776678889999999999999995 66788999999999999998664 668999
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEecc---CceeeecCCCEEEEEecCCeEEEEecc-----
Q 004603 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIF----- 709 (743)
Q Consensus 639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh~~~----- 709 (743)
|++.|.|.+|+|-.+++++||+.||+||+||++.. ..+.++.+. ..+.+.|.|..|++++.+ .|++||..
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL 230 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee
Confidence 99999999999999999999999999999999987 666667654 446778898998888755 68887754
Q ss_pred ----------cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 710 ----------LNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 710 ----------v~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
++++.+.. ++..|+|+|-||.|++||.
T Consensus 231 l~~~~~H~KtVTcL~l~s--~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLAS--DSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred hhhhhcccceEEEEEeec--CCceEeecccccceEEEEc
Confidence 34454444 4789999999999999993
No 84
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.9e-19 Score=176.10 Aligned_cols=219 Identities=16% Similarity=0.152 Sum_probs=171.4
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp--dg~~LaSgs~Dg~V~IWd 583 (743)
...|++++.|++|++|..... .....+.+|.+|.++|.-++|.. -|.+||+++.||+|.||.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n----------------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNN----------------GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred cceeeeecCCccEEEEEEcCC----------------CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 578999999999999955433 12367889999999999999965 899999999999999999
Q ss_pred CCCCe--EEEEEcccCCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecC---C--
Q 004603 584 TESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPS---K-- 652 (743)
Q Consensus 584 ~~t~~--~i~~l~~H~~~V~~vafsp~--~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~h~~~V~sl~fsp~---g-- 652 (743)
-.++. ....+..|...|++|+|.|. |-.|++++.||.|.|.+++... ...+....|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 87763 33456689999999999995 6789999999999999988652 223455689999999999996 3
Q ss_pred --------CcEEEEEeCCCcEEEEECCCCee--eEEEeccCc----eeeecC----CCEEEEEecCCeEEEEecccc---
Q 004603 653 --------EDLLCSCDNNSEIRYWSINNGSC--AGVFKVCNL----MPIILK----GCFILNSIFNCYLLLHRIFLN--- 711 (743)
Q Consensus 653 --------~~lL~Sgs~Dg~IrvWDl~tg~~--v~~~~~~~~----i~~s~~----g~~l~sgs~Dg~I~vh~~~v~--- 711 (743)
.+-|++|+.|..|+||+..++.. -+.+.+|+. +++.|. -.+|++++.||++.||+....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 13488999999999999988642 234666643 445553 357999999999999876532
Q ss_pred ------------eEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 712 ------------LLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 712 ------------~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
+..+++...+..|+.++.|..|.+|++..
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 22233333377999999999999998753
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=1e-18 Score=202.32 Aligned_cols=244 Identities=18% Similarity=0.241 Sum_probs=187.7
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004603 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.+...+.|+.|++|| .++++||.|+.|.+|.-.. ......++.--.......++.+..+.+|.+
T Consensus 67 ~h~~sv~CVR~S~dG---------------~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~ 130 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDG---------------SYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDS 130 (942)
T ss_pred cccCceeEEEECCCC---------------CeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCC
Confidence 345678899999988 6999999999999996553 111112211122334567889999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
.|.+++|+|++.+||+++.|++|.|||..+++.+.++++|...|..+.|+|-|++|+|-+.|++|+||++.+-.. .+.+
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i-~k~I 209 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI-EKSI 209 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee-eEee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999766332 3444
Q ss_pred ecC------CCCeEEEEEecCCCcEEEEEeC---CCcEEEEECCCCeeeEEEeccCc----eeeec------C-------
Q 004603 637 TGH------STTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGSCAGVFKVCNL----MPIIL------K------- 690 (743)
Q Consensus 637 ~~h------~~~V~sl~fsp~g~~lL~Sgs~---Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~------~------- 690 (743)
.++ +..+..+.|+|||.++.+.-+. -.++.|.+..+.++-..|-+|.. +.|.| .
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~ 289 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQ 289 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccC
Confidence 433 3457889999999865543322 23688888888787777777743 34443 1
Q ss_pred C----CEEEEEecCCeEEEEeccc-------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 691 G----CFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 691 g----~~l~sgs~Dg~I~vh~~~v-------------~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
. +.+++|+.|++|.||.... ...++++..++..|+.||.||+|.+..
T Consensus 290 ~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 290 PNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred CCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 1 3688999999999986431 233444445588999999999998863
No 86
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.8e-18 Score=176.83 Aligned_cols=218 Identities=18% Similarity=0.237 Sum_probs=173.9
Q ss_pred EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004603 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (743)
Q Consensus 509 l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~ 588 (743)
++.|++...|..|.......+. ......++.+...+..|.+.|+|+++ +++++|+||.|.+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~-------~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGC-------TDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCcccc-------ccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence 5678887777777443332111 12234566778888999999999999 58999999999999999999988
Q ss_pred EEEEEcccCCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603 589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 589 ~i~~l~~H~~~V~~vafsp~~~--~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir 666 (743)
.+..+-.|.+.|+++.|.++.. .|++|+.||.|.+||+..- .++.++++|.+.|+.|+.||.++ +..+.+.|+.+|
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 8888989999999999998654 8999999999999999875 56999999999999999999987 555888899999
Q ss_pred EEECCCCeeeEEEec---cCceeeecCCCEEEEEecCCeEEEEecc-----------cceEEEEecCCCCEEEEEeCCCe
Q 004603 667 YWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNCYLLLHRIF-----------LNLLSVSEWCNPDEISTSSWKDS 732 (743)
Q Consensus 667 vWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~Dg~I~vh~~~-----------v~~l~v~~~~~~~~laSgs~DG~ 732 (743)
.||+-.|+...+... .+.+.|++.|.+++.++.++ |-+|... ...+++.+. +.+++++|+.|+.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW 230 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce
Confidence 999998887665553 24478999999888888775 4443322 123333333 3789999999999
Q ss_pred EEEeCCC
Q 004603 733 CCSHREL 739 (743)
Q Consensus 733 V~iWd~~ 739 (743)
|++||++
T Consensus 231 i~~~D~d 237 (362)
T KOG0294|consen 231 ISLKDTD 237 (362)
T ss_pred EEEeccC
Confidence 9999987
No 87
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=1.9e-18 Score=174.89 Aligned_cols=197 Identities=17% Similarity=0.280 Sum_probs=158.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
.+++.+|+.|+.|.+|+..+..+......-+. .........-.+|.-.|.++.|-| |...|.+++.|++++|||+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k----~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDt 131 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAK----HKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDT 131 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeh----eeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeec
Confidence 48999999999999998876543332211111 001111222357899999999999 7779999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~---~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~ 661 (743)
.+.+....|+ ..+.|++-+|+|- -.+||+|..|-.|++.|+..+.. .+++.||...|.+|.|+|..+++|++|+.
T Consensus 132 nTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLatgsa 209 (397)
T KOG4283|consen 132 NTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLATGSA 209 (397)
T ss_pred ccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeEEEecCC
Confidence 9988877776 4678999999993 34678888999999999999775 89999999999999999999999999999
Q ss_pred CCcEEEEECCCC-eeeEEEeccC------------------ceeeecCCCEEEEEecCCeEEEEec
Q 004603 662 NSEIRYWSINNG-SCAGVFKVCN------------------LMPIILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 662 Dg~IrvWDl~tg-~~v~~~~~~~------------------~i~~s~~g~~l~sgs~Dg~I~vh~~ 708 (743)
||.||+||++.. .|..++..|. .+++..+|.++++.+.|.++++|..
T Consensus 210 Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 210 DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred CceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 999999999975 5666665432 3677889999999999999999764
No 88
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.5e-19 Score=188.05 Aligned_cols=160 Identities=23% Similarity=0.396 Sum_probs=125.4
Q ss_pred ceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC
Q 004603 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 543 ~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t---~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg 619 (743)
.+......+..|++.|.-|.||++|++||+|+.|.++.||++.. .+...++.+|..+|..+.|+||.++|++|+.|.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 34456678899999999999999999999999999999998754 456789999999999999999999999999999
Q ss_pred eEEEEECCCCCeeEEEEe-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc-----CceeeecCCCE
Q 004603 620 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-----NLMPIILKGCF 693 (743)
Q Consensus 620 ~VrvWDl~~~~~~l~~l~-~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~-----~~i~~s~~g~~ 693 (743)
.+++||+.++.. ++.+. +|...+.+++|.|||.. +++|+.|++|..||++.. ....+.+. ..+++.+||.+
T Consensus 292 ~~~lwDv~tgd~-~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 292 VLSLWDVDTGDL-RHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred heeeccCCcchh-hhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcE
Confidence 999999999775 44443 45678999999999875 559999999999998733 22222222 12444455555
Q ss_pred EEEEecCCeEEE
Q 004603 694 ILNSIFNCYLLL 705 (743)
Q Consensus 694 l~sgs~Dg~I~v 705 (743)
+++.+.|..|++
T Consensus 369 vl~v~~d~~i~l 380 (519)
T KOG0293|consen 369 VLLVTVDKKIRL 380 (519)
T ss_pred EEEEecccceee
Confidence 555555554444
No 89
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=1.7e-19 Score=186.84 Aligned_cols=226 Identities=17% Similarity=0.190 Sum_probs=172.7
Q ss_pred EEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC
Q 004603 486 MFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP 565 (743)
Q Consensus 486 ~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp 565 (743)
..+.||..+++-.++.+ ..+++|+.||.|++|+. ..-.+..++++|.+.|..|++..
T Consensus 63 ~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnl-------------------sqR~~~~~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNL-------------------SQRECIRTFKAHEGLVRGICVTQ 119 (433)
T ss_pred cccccccchhhcCcchh----hhhhccccCceEEEEeh-------------------hhhhhhheeecccCceeeEEecc
Confidence 45566665555554433 45699999999999944 33356788999999999999975
Q ss_pred CCCEEEEEeCCCcEEEEECCC---------------------------Ce-----------EEEEEcccCCCEEEEEEcC
Q 004603 566 DGKLLATGGHDKKAVLWCTES---------------------------FT-----------VKSTLEEHTQWITDVRFSP 607 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t---------------------------~~-----------~i~~l~~H~~~V~~vafsp 607 (743)
..+++++.|++|+.|-++. |+ ++..+.--.+.|.++.|+|
T Consensus 120 --~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred --cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCC
Confidence 6788999999999996431 11 1222222345689999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEeccCc-
Q 004603 608 S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCNL- 684 (743)
Q Consensus 608 ~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~~- 684 (743)
. ...|++|+.|+.|.+||+++... ++... -...-+.|+|+| ..+.|+++++|..++.||++.. ..+.++.+|..
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~P-l~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA 274 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASP-LKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA 274 (433)
T ss_pred CcchheeeeccCCceEEEecccCCc-cceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhccccee
Confidence 5 56778888999999999998765 44333 234567899999 4567889999999999999974 56677777644
Q ss_pred ---eeeecCCCEEEEEecCCeEEEEeccc-------------ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 685 ---MPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 685 ---i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+.|+|.|.-+++|+.|.+|+|..... .++++.+..+..+|+|||.|+.|++|+..
T Consensus 275 V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 275 VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 67999999999999999999944321 46777778889999999999999999864
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=9.7e-20 Score=203.52 Aligned_cols=211 Identities=14% Similarity=0.287 Sum_probs=168.4
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
+++|++++..|.|.+|+.... ...+.+..|.+|+..|+++.|++ ...+|++||.||+|++||+
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~----------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKS----------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred hhhheeecCCCcEEEEecCcc----------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 588999999999999965432 12244567889999999999998 6679999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg 663 (743)
+..+...++.+....|.+|.|+| .+..|+++...|+|++||+|.+..+...+..|.++|.++.|||++ .+||+|+.|+
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK 242 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDK 242 (839)
T ss_pred ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCc
Confidence 99999999999999999999999 588999999999999999999998899999999999999999964 5899999999
Q ss_pred cEEEEECCCCee-----eEEEeccCceeeecCCCE-EEEE--ecCCeEEEEecccc---------------eEEEEecCC
Q 004603 664 EIRYWSINNGSC-----AGVFKVCNLMPIILKGCF-ILNS--IFNCYLLLHRIFLN---------------LLSVSEWCN 720 (743)
Q Consensus 664 ~IrvWDl~tg~~-----v~~~~~~~~i~~s~~g~~-l~sg--s~Dg~I~vh~~~v~---------------~l~v~~~~~ 720 (743)
.|+|||+.+.+. +.+......+.|-|.-.+ |+++ ..|-.|.||++... .++|.. .+
T Consensus 243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~-~d 321 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS-GD 321 (839)
T ss_pred cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC-CC
Confidence 999999986543 222333344667776665 3433 34778888876543 333433 23
Q ss_pred CCEEEEEeCCCeEE
Q 004603 721 PDEISTSSWKDSCC 734 (743)
Q Consensus 721 ~~~laSgs~DG~V~ 734 (743)
...+.+++-||+|.
T Consensus 322 ~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 322 RINLWSCSKDGTVL 335 (839)
T ss_pred ceeeEeecCccHHH
Confidence 56777777777764
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=183.65 Aligned_cols=210 Identities=14% Similarity=0.156 Sum_probs=180.5
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
.++.+|+.|.++.++ +......+.+++||+.+|+++.|+++...+++++.|..|+||.+..
T Consensus 232 ~~ilTGG~d~~av~~-------------------d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLF-------------------DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CcceecCCCCceEEE-------------------ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 678999999999999 3334467788999999999999999999999999999999999988
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--CCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~--h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
.........|..+|+.+..+|.|.||++++.|++..+.|++++.. +..... ..-.+++.+|||||- +|.+|..|+.
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~ 370 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGV 370 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE-EEEEeeccccceeEEeeEcCCce-EEeccCCCce
Confidence 777778889999999999999999999999999999999999775 333322 223589999999975 8889999999
Q ss_pred EEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc-------------ceEEEEecCCCCEEEEE
Q 004603 665 IRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEISTS 727 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------~~l~v~~~~~~~~laSg 727 (743)
|+|||+.+...+..|.+|+. +.|+.+|-|++++.+|+.|++||..- .+..++++..+.+++.+
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 99999999999999998854 78999999999999999999998642 13444555558899999
Q ss_pred eCCCeEEEeC
Q 004603 728 SWKDSCCSHR 737 (743)
Q Consensus 728 s~DG~V~iWd 737 (743)
|.|=.|++++
T Consensus 451 g~~l~Vy~~~ 460 (506)
T KOG0289|consen 451 GSDLQVYICK 460 (506)
T ss_pred cceeEEEEEe
Confidence 9998888876
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.7e-17 Score=170.32 Aligned_cols=223 Identities=16% Similarity=0.165 Sum_probs=174.2
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
...+..+.|+.+| .++++++.|+.+++|++.++ +.++++..+...|
T Consensus 14 ~~~i~sl~fs~~G---------------~~litss~dDsl~LYd~~~g-------------------~~~~ti~skkyG~ 59 (311)
T KOG1446|consen 14 NGKINSLDFSDDG---------------LLLITSSEDDSLRLYDSLSG-------------------KQVKTINSKKYGV 59 (311)
T ss_pred CCceeEEEecCCC---------------CEEEEecCCCeEEEEEcCCC-------------------ceeeEeecccccc
Confidence 3455667777777 57888999999999977665 5667777777789
Q ss_pred EEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603 559 ESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 559 ~siafspdg~~LaSgs~--Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
..++|....+.++.++. |.+|+..++.+.+.++.|.||...|.+++.+|-++.+++++.|++||+||++..++ ...+
T Consensus 60 ~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-qg~l 138 (311)
T KOG1446|consen 60 DLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-QGLL 138 (311)
T ss_pred cEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-ceEE
Confidence 99999776666666665 89999999999999999999999999999999889999999999999999997554 4433
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC--eeeEEEec-------cCceeeecCCCEEEEEecCCeEEEEe
Q 004603 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKV-------CNLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg--~~v~~~~~-------~~~i~~s~~g~~l~sgs~Dg~I~vh~ 707 (743)
. ...-..++|+|+|- ++|.+.....|++||+|.- .+..+|.. .+.+.|+++|++|+.+...+.+.+-+
T Consensus 139 ~--~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 139 N--LSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred e--cCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 3 23334579999985 6667766669999999963 33344432 24588999999999999988877733
Q ss_pred ccc---------------ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 708 IFL---------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 708 ~~v---------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
... ..+...+.+++.+|++|+.||+|.+|+-.
T Consensus 216 Af~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 216 AFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred ccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 221 12455566678899999999999999753
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.81 E-value=8.2e-19 Score=194.26 Aligned_cols=208 Identities=17% Similarity=0.224 Sum_probs=172.8
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~s-iafsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
..+.++|.|+++++|.- ++..+.+...+.+|.+-|.+ ++|-+ ++-++++|+.|++|.+|..
T Consensus 26 ~~i~s~sRd~t~~vw~~-----------------~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAK-----------------KGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eEEeecCCCCceeeeec-----------------cCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 36899999999999932 44455666778889988888 88886 5667999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
....++.++.+|...|+|++...++. ++|||+|.++++|-+.. +...+.+|...|+++.+-|++ .++|||.|.+
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKt 162 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKT 162 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcce
Confidence 99999999999999999999877766 99999999999998754 456799999999999999987 5779999999
Q ss_pred EEEEECCCCeeeEEEeccCcee---eecCCCEEEEEecCCeEEEEecccce-----------EEEEecCCCCEEEEEeCC
Q 004603 665 IRYWSINNGSCAGVFKVCNLMP---IILKGCFILNSIFNCYLLLHRIFLNL-----------LSVSEWCNPDEISTSSWK 730 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~~~~~i~---~s~~g~~l~sgs~Dg~I~vh~~~v~~-----------l~v~~~~~~~~laSgs~D 730 (743)
||+|.- ++++++|.+|+.+. ...+...+++++.||.|++|+....+ .+++...+.+.|+|+|.|
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED 240 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGED 240 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCC
Confidence 999975 78899999986533 22355678899999999999875432 233334457899999999
Q ss_pred CeEEEeCCC
Q 004603 731 DSCCSHREL 739 (743)
Q Consensus 731 G~V~iWd~~ 739 (743)
+++++|+..
T Consensus 241 rtlriW~~~ 249 (745)
T KOG0301|consen 241 RTLRIWKKD 249 (745)
T ss_pred ceEEEeecC
Confidence 999999875
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.80 E-value=7.2e-19 Score=178.84 Aligned_cols=190 Identities=24% Similarity=0.302 Sum_probs=155.9
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEEcccCCCEEEEEEcC
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSP 607 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t------------------~~~i~~l~~H~~~V~~vafsp 607 (743)
-+...+..|..++.+.+|++||.++|||+.|..|+|.|++. ...++++..|.+.|+++.|||
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34567789999999999999999999999999999999861 135788999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec----
Q 004603 608 SLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---- 681 (743)
Q Consensus 608 ~~~~LaSgs~Dg~VrvWDl~~~~~--~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~---- 681 (743)
....|++|+.|++|++||+..... ..++|. ....|.+|.|||.|+++| .|..--++|+||+++.+|...-..
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccc
Confidence 999999999999999999976432 122333 346799999999998555 777778999999999988654331
Q ss_pred ---cCceeeecCCCEEEEEecCCeEEEEeccc--------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 682 ---CNLMPIILKGCFILNSIFNCYLLLHRIFL--------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 682 ---~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v--------------~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
.+.+.+++.|...++++.||.|++|+... ...+..+..++.+|++.|-|.+|++|.
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 24467889999999999999999998642 223344556688999999999999995
No 95
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=1.1e-18 Score=194.25 Aligned_cols=205 Identities=20% Similarity=0.302 Sum_probs=167.6
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW 582 (743)
.+.....++||.|.+|+.|+..-..+......+. ......+++ .-++.|.|+++||||++||++--|.+|+||
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~------lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV------LSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCccccee------eeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 3445778999999999999553221100000000 111112222 234569999999999999999999999999
Q ss_pred ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 583 d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D 662 (743)
-+++.+....+.||.-+|.|+.++||+..++||+.|+.|++|-++-+. |-+.+.+|.+.|++|.|.|. .+++++|+.|
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD 613 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPK-THLFFTCGKD 613 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEccc-ceeEEEecCc
Confidence 999999999999999999999999999999999999999999998765 57888899999999999996 5678899999
Q ss_pred CcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEecccceEEEE
Q 004603 663 SEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFLNLLSVS 716 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v~ 716 (743)
+.|+.||-..-+++..+.+|.. .+++|+|.|+++++.|..|++|......+.+.
T Consensus 614 ~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 614 GKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE 671 (888)
T ss_pred ceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence 9999999999999999998854 67889999999999999999998766555543
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.80 E-value=9.3e-20 Score=185.81 Aligned_cols=181 Identities=22% Similarity=0.341 Sum_probs=152.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE--------cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--------EEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l--------~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD 625 (743)
..+.+.|..|+|||.+|++|+.||.|.|||..+|+....+ .-|...|.|+.|+.|...+++|+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 3445889999999999999999999999999988765433 35788999999999999999999999999999
Q ss_pred CCCCCeeEEEEe-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecC
Q 004603 626 TENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFN 700 (743)
Q Consensus 626 l~~~~~~l~~l~-~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~D 700 (743)
++++.+ ++.|. .|+..|+++.|+.|+..+| +++.|.+|||--+.+|+|++.|++|+. ..|.++|.++++++.|
T Consensus 292 i~tG~C-lRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 292 IETGQC-LRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EecchH-HHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 999775 66665 8999999999999988777 899999999999999999999999865 5689999999999999
Q ss_pred CeEEEEeccc----------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 701 CYLLLHRIFL----------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 701 g~I~vh~~~v----------------~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
|+|++|+... ..+..- ..++..++.|....+|+|-+
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~-PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILL-PKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEc-CCCCceEEEEcCCCeEEEEe
Confidence 9999987532 111111 12266788888888877754
No 97
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.80 E-value=9.4e-19 Score=186.42 Aligned_cols=220 Identities=14% Similarity=0.154 Sum_probs=169.8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
..+|++++..+.|.||+.....+.....+ ...+-..+.+|...-++++|++ ..-.|++|+.|++|++||+
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi 207 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDI 207 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEec
Confidence 37889999999999997765543222111 3345567889999889999998 4457999999999999998
Q ss_pred CCC-------eEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CCeeEEEEecCCCCeEEEEEecCCCcE
Q 004603 585 ESF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (743)
Q Consensus 585 ~t~-------~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~-~~~~l~~l~~h~~~V~sl~fsp~g~~l 655 (743)
... .+...+.+|+..|..|+|++ +..+|++++.|+.+.|||+|+ ...+.....+|...|+|++|+|-+.++
T Consensus 208 ~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~i 287 (422)
T KOG0264|consen 208 NAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFI 287 (422)
T ss_pred cccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCce
Confidence 642 24567889999999999999 577899999999999999996 344567788999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC-eeeEEEeccCc----eeeecC-CCEEEEEecCCeEEEEecccceEEE----EecCC-CCEE
Q 004603 656 LCSCDNNSEIRYWSINNG-SCAGVFKVCNL----MPIILK-GCFILNSIFNCYLLLHRIFLNLLSV----SEWCN-PDEI 724 (743)
Q Consensus 656 L~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~~----i~~s~~-g~~l~sgs~Dg~I~vh~~~v~~l~v----~~~~~-~~~l 724 (743)
||+||.|++|++||+|+. +++.++.+|.. +.|+|. ...|++++.|+++.||+..--.-.- ....+ ..++
T Consensus 288 lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF 367 (422)
T KOG0264|consen 288 LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF 367 (422)
T ss_pred EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence 999999999999999974 57788888754 556664 4567788899999999875422221 11122 3356
Q ss_pred EEEeCCCeEE
Q 004603 725 STSSWKDSCC 734 (743)
Q Consensus 725 aSgs~DG~V~ 734 (743)
.=||.-++|.
T Consensus 368 ~HgGH~~kV~ 377 (422)
T KOG0264|consen 368 IHGGHTAKVS 377 (422)
T ss_pred EecCcccccc
Confidence 6677776664
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.80 E-value=1e-18 Score=183.70 Aligned_cols=207 Identities=17% Similarity=0.234 Sum_probs=167.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.+.+...+.|+++++|... ......++.+|+++|+++.|.-....+++|+.|.+|++||+.
T Consensus 231 ~~~~iAas~d~~~r~Wnvd-------------------~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~ 291 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVD-------------------SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ 291 (459)
T ss_pred CceEEeecCCCceeeeecc-------------------chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence 3677888899999999443 335678899999999999998766669999999999999999
Q ss_pred CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I 665 (743)
...|.+++-. ...+.+|... ...+++|-.|++||+||++.... +.....+. .|++|..++++..++ +++.|.++
T Consensus 292 k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~-~~sv~~gg-~vtSl~ls~~g~~lL-sssRDdtl 365 (459)
T KOG0288|consen 292 KAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK-TRSVPLGG-RVTSLDLSMDGLELL-SSSRDDTL 365 (459)
T ss_pred hhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCce-eeEeecCc-ceeeEeeccCCeEEe-eecCCCce
Confidence 8888776542 3445566554 45688888999999999998665 66666554 899999999998777 66889999
Q ss_pred EEEECCCCeeeEEEecc--------CceeeecCCCEEEEEecCCeEEEEecccc--------------eEEEEecCCCCE
Q 004603 666 RYWSINNGSCAGVFKVC--------NLMPIILKGCFILNSIFNCYLLLHRIFLN--------------LLSVSEWCNPDE 723 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~--------~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~--------------~l~v~~~~~~~~ 723 (743)
.+.|+++.+....|... +.+.|+|++.|+++|+.||.|.||+.... .+++.+.+.+..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 99999999988887642 45889999999999999999999975421 223333344789
Q ss_pred EEEEeCCCeEEEeC
Q 004603 724 ISTSSWKDSCCSHR 737 (743)
Q Consensus 724 laSgs~DG~V~iWd 737 (743)
+++++.++.|.+|.
T Consensus 446 Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 446 LLSADKQKAVTLWT 459 (459)
T ss_pred hhcccCCcceEecC
Confidence 99999999999994
No 99
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.79 E-value=7.7e-18 Score=175.04 Aligned_cols=191 Identities=19% Similarity=0.235 Sum_probs=160.5
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD 625 (743)
..+.+|..|++.|++|+.+|+.++++||+.|....||++.+++....+.+|+..|+|+.|+.++.+||||+.+|.|+||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCC
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNC 701 (743)
Q Consensus 626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg 701 (743)
..++.. ...+......+.=++|||.+. +|++|+.||.|.+|.+.++...+.+.+|.. =.|.|+|+.++++..|+
T Consensus 135 ~stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 135 VSTGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred cccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 999776 555544455677799999765 777999999999999999878888888754 34889999999999999
Q ss_pred eEEEEecccce-------------EEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 702 YLLLHRIFLNL-------------LSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 702 ~I~vh~~~v~~-------------l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+|++|+..... -.+.....+..+++|+.++.+++-..
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence 99998754321 11222223667888888888776543
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=3e-18 Score=189.25 Aligned_cols=231 Identities=18% Similarity=0.204 Sum_probs=172.9
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCC----cc----cc----------ccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCE
Q 004603 508 FVDDGSLDDNVESFLSPDDADPRD----RV----GR----------SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL 569 (743)
Q Consensus 508 ~l~sGs~D~~V~iw~s~~~~~~~~----~~----~~----------~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~ 569 (743)
-+.+++.|++|++|+......... .. .+ +.+...+.-.+.....-+....|.||+++|+|.+
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 457899999999997765221111 00 00 0111111111111222234456999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 004603 570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (743)
Q Consensus 570 LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp---~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl 646 (743)
||+|..-|+++||++.+.+....++.|...|.|+.|+. ..++|++++.|..|+|||+...-.++.++.+|.+.|++|
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 99999999999999999888889999999999999976 356899999999999999976655566777777777766
Q ss_pred EEecCC------------------------------------------------CcEEEEEeCCCcEEEEECCCCeeeEE
Q 004603 647 DFHPSK------------------------------------------------EDLLCSCDNNSEIRYWSINNGSCAGV 678 (743)
Q Consensus 647 ~fsp~g------------------------------------------------~~lL~Sgs~Dg~IrvWDl~tg~~v~~ 678 (743)
.|.-.| ..++++++.|..|||||+.+|+.++.
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS 633 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence 665422 12457888999999999999999999
Q ss_pred EeccCc-------eeeecCCCEEEEEecCCeEEE--------------EecccceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 679 FKVCNL-------MPIILKGCFILNSIFNCYLLL--------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 679 ~~~~~~-------i~~s~~g~~l~sgs~Dg~I~v--------------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
|++... +.+.|.|.||++...|.++.+ |...++.+.|..+|. .|++.+.||.|.||+
T Consensus 634 FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk--HlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK--HLISVSGDGCIFVWK 711 (1080)
T ss_pred ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch--hheeecCCceEEEEE
Confidence 997422 557799999999999999998 455566666766654 899999999999998
Q ss_pred CCc
Q 004603 738 ELY 740 (743)
Q Consensus 738 ~~~ 740 (743)
-..
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 643
No 101
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.7e-18 Score=183.16 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=158.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------ 628 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~------ 628 (743)
.++|.|++-+|+|.+|+.|+..+.+++|.+.+|..+.++.+|--.|+|+.|+-|+.+|+||+.||.|++|++..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 46799999999999999998999999999999999999999999999999999999999999999999998632
Q ss_pred --CCeeEEEEecCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCCe
Q 004603 629 --PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCY 702 (743)
Q Consensus 629 --~~~~l~~l~~h~~~V~sl~fsp~g~-~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~ 702 (743)
...+++.|..|.-+|+++...+.|. -.++|+|.|.+||+||+..|..+.++... .++.++|.++.+++|+.+|.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence 2346889999999999999887632 36779999999999999999988777654 55789999999999999999
Q ss_pred EEE------------------------------Eec--ccceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 703 LLL------------------------------HRI--FLNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 703 I~v------------------------------h~~--~v~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
|.+ |.. .+++++++.+ +.++++|+.||+|+|||-
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D--gtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD--GTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC--ccEEEeeCCCCCEEEEec
Confidence 887 223 4566666665 789999999999999985
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.79 E-value=3.3e-18 Score=183.77 Aligned_cols=232 Identities=18% Similarity=0.213 Sum_probs=167.6
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee-CCCC
Q 004603 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS 556 (743)
Q Consensus 478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~ 556 (743)
|+..++.+.+.|.| ..+++|++|.+|++|++..-.. .+..++.+. ..+.
T Consensus 166 gtk~Vsal~~Dp~G---------------aR~~sGs~Dy~v~~wDf~gMda---------------s~~~fr~l~P~E~h 215 (641)
T KOG0772|consen 166 GTKIVSALAVDPSG---------------ARFVSGSLDYTVKFWDFQGMDA---------------SMRSFRQLQPCETH 215 (641)
T ss_pred CceEEEEeeecCCC---------------ceeeeccccceEEEEecccccc---------------cchhhhccCccccc
Confidence 44555555566555 5789999999999998765421 111122221 2334
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE------------cccCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 004603 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l------------~~H~~~V~~vafsp~-~~~LaSgs~Dg~Vrv 623 (743)
.|.++.|++.|..|++.+..-.++|+|-+....+... +||...++|.+|+|. ...|+||+.||++|+
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 5999999999998888888889999997665544433 589999999999996 567999999999999
Q ss_pred EECCCCCeeEEEEe-----cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee--eEEE-ecc------Cceeeec
Q 004603 624 WDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVF-KVC------NLMPIIL 689 (743)
Q Consensus 624 WDl~~~~~~l~~l~-----~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~--v~~~-~~~------~~i~~s~ 689 (743)
||+.+.+.-+.+++ +..-.|++++|+|+|. ++++|+.||.|.+||.++... ...+ ..| +++.|+.
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence 99988765555554 3345689999999998 577889999999999865322 2222 222 5688999
Q ss_pred CCCEEEEEecCCeEEEEecccc---------------eEEEEecCCCCEEEEEe------CCCeEEEeCCCc
Q 004603 690 KGCFILNSIFNCYLLLHRIFLN---------------LLSVSEWCNPDEISTSS------WKDSCCSHRELY 740 (743)
Q Consensus 690 ~g~~l~sgs~Dg~I~vh~~~v~---------------~l~v~~~~~~~~laSgs------~DG~V~iWd~~~ 740 (743)
+|++|++.+.|+++++|+..-. ....++.++..+|++|. ..|++++||...
T Consensus 375 dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 375 DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 9999999999999999987532 11223334456777775 456677776543
No 103
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=9.5e-20 Score=202.16 Aligned_cols=189 Identities=23% Similarity=0.354 Sum_probs=166.3
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004603 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 549 ~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~ 628 (743)
..+..|...|.|+..-..++.+++|+.|.++-+|.+.....+..|.+|...|.||.|++...+|+.|+.||+|++||+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45567888999999877889999999999999999988888888999999999999999999999999999999999998
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEE
Q 004603 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~ 704 (743)
.+. ++++.+|...+.+|+|+|-+. ++++|+.|+.+++||++..-|.+.+++|.. +.|+|+|+|+++|++|++++
T Consensus 102 Ak~-vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 AKI-VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hhh-hhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 765 889999999999999999986 558999999999999999889999998644 66889999999999999999
Q ss_pred EEecccc------------eEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 705 LHRIFLN------------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 705 vh~~~v~------------~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+|+..-. ...+.+.....++++||.|++|++||-+
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 9987432 2233333335689999999999999987
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.1e-18 Score=177.69 Aligned_cols=196 Identities=16% Similarity=0.209 Sum_probs=167.0
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004603 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~Vrv 623 (743)
.+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++|+.++.||.+.|.+|.|++.+.+++|++.|++.+|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 34567888999999999999887789999999999999999999999999999999999999999999999999999999
Q ss_pred EECC------C---------------------------------CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 624 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 624 WDl~------~---------------------------------~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
|... . -..++..+.+|.+.|.+.+|-..|. -+++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeecccc
Confidence 9731 0 0125778899999999999988776 4559999999
Q ss_pred EEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEecccce-------------EEEEecCCCCEEEEE
Q 004603 665 IRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFLNL-------------LSVSEWCNPDEISTS 727 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~-------------l~v~~~~~~~~laSg 727 (743)
..+||+++++.+..+.+|. .++.+|.-+++++.+.|.++++|+..... ..+.+.. ...+++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~-dd~vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT-DDRVVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec-CCceeec
Confidence 9999999999999999984 46778999999999999999998865321 1222222 5689999
Q ss_pred eCCCeEEEeCCCcc
Q 004603 728 SWKDSCCSHRELYL 741 (743)
Q Consensus 728 s~DG~V~iWd~~~~ 741 (743)
+.|.+|++||-+..
T Consensus 375 SDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNM 388 (481)
T ss_pred CCCceEEEeeeccc
Confidence 99999999997653
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.78 E-value=3e-18 Score=183.32 Aligned_cols=217 Identities=18% Similarity=0.263 Sum_probs=165.8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP--ASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~H~~~V~siafspdg~~LaSgs~Dg~V~IWd 583 (743)
.+.|.+|+. +.|++|+..... ...++..+. .....|.+|...|||+.|++|++-.+|.|||
T Consensus 431 trhVyTgGk-gcVKVWdis~pg----------------~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 431 TRHVYTGGK-GCVKVWDISQPG----------------NKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred cceeEecCC-CeEEEeeccCCC----------------CCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 355555554 677788654431 112222222 2345699999999999999999999999999
Q ss_pred CCCCeE--EEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603 584 TESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 584 ~~t~~~--i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~ 661 (743)
+....+ ...+....-.+++++.+||.+..++|+.||.|+|||+++.. .++.|.||.+.+.||+++++|..+. +|+.
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklW-TGGl 571 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLW-TGGL 571 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceee-cCCC
Confidence 976433 22333333467889999999999999999999999999855 5999999999999999999998776 9999
Q ss_pred CCcEEEEECCCCeeeEEEeccC---ceeeecCCCEEEEEecCCeEEE-----------EecccceEEEEecCCCCEEEEE
Q 004603 662 NSEIRYWSINNGSCAGVFKVCN---LMPIILKGCFILNSIFNCYLLL-----------HRIFLNLLSVSEWCNPDEISTS 727 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~~~---~i~~s~~g~~l~sgs~Dg~I~v-----------h~~~v~~l~v~~~~~~~~laSg 727 (743)
|.+||.||+++++.+..+.... .+.++|.+.||++|-.++.+.| |-....++++.+..-+.++++.
T Consensus 572 DntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred ccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeec
Confidence 9999999999998765544332 2456799999999999998887 2233345555555558899999
Q ss_pred eCCCeEEEeCCCcc
Q 004603 728 SWKDSCCSHRELYL 741 (743)
Q Consensus 728 s~DG~V~iWd~~~~ 741 (743)
|-|..+-.|...|-
T Consensus 652 GkDnlLnawrtPyG 665 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYG 665 (705)
T ss_pred CchhhhhhccCccc
Confidence 99999999998874
No 106
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=3.2e-18 Score=191.52 Aligned_cols=223 Identities=15% Similarity=0.185 Sum_probs=167.3
Q ss_pred cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC
Q 004603 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (743)
Q Consensus 476 ~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (743)
..+.+.+..+.|++... .+|.+||.|+.|++|+.... +.+.++.+..
T Consensus 130 ~EH~Rs~~~ldfh~tep--------------~iliSGSQDg~vK~~DlR~~-------------------~S~~t~~~nS 176 (839)
T KOG0269|consen 130 NEHERSANKLDFHSTEP--------------NILISGSQDGTVKCWDLRSK-------------------KSKSTFRSNS 176 (839)
T ss_pred hhhccceeeeeeccCCc--------------cEEEecCCCceEEEEeeecc-------------------cccccccccc
Confidence 34566666777776443 79999999999999966544 2344556678
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-e
Q 004603 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-S 632 (743)
Q Consensus 556 ~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~-~ 632 (743)
..|.+|.|+| .+..|+++.+.|.+.+||++. .++...+.+|.++|.|+.|||+..+||||+.|++|+|||+.+++. +
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 8899999999 788999999999999999986 346677889999999999999999999999999999999986443 2
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEECCCC-eeeEEEeccCc----eeee-cCCCEEEEEecCCeEE
Q 004603 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNG-SCAGVFKVCNL----MPII-LKGCFILNSIFNCYLL 704 (743)
Q Consensus 633 l~~l~~h~~~V~sl~fsp~g~~lL~Sgs--~Dg~IrvWDl~tg-~~v~~~~~~~~----i~~s-~~g~~l~sgs~Dg~I~ 704 (743)
..++. ...+|..|.|-|+..+.|++|+ .|-.|+|||++.. -+..+|..|+. +++. .+-..+++++.|++|.
T Consensus 257 ~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 257 KHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 33332 4578999999999998898876 5778999999865 34566666643 3443 3566799999999998
Q ss_pred EEecccceEEEEecCCCCEEEEEeCCCeEE
Q 004603 705 LHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734 (743)
Q Consensus 705 vh~~~v~~l~v~~~~~~~~laSgs~DG~V~ 734 (743)
.|......-.+... +...++.|-+|.+.
T Consensus 336 qh~~knat~pid~a--~~~~~s~g~~g~l~ 363 (839)
T KOG0269|consen 336 QHLFKNATTPIDLA--NNGGLSVGQFGDLY 363 (839)
T ss_pred HhhhhcccChhhhc--CcccccccccCcee
Confidence 87655444333333 22344444444443
No 107
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=6.5e-17 Score=165.26 Aligned_cols=221 Identities=15% Similarity=0.211 Sum_probs=164.3
Q ss_pred ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004603 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (743)
Q Consensus 475 ~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (743)
...+...++.+.|++.. ..|..++||+++++|+.... .....-.|
T Consensus 9 ~npP~d~IS~v~f~~~~---------------~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~ 53 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSS---------------SDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKH 53 (323)
T ss_pred CCCChhceeeEEEcCcC---------------CcEEEEeccCcEEEEeccch--------------------hhhhheec
Confidence 33444556677777544 56777789999999955432 12222358
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~ 634 (743)
..+|.+|+|.+ ...+++|+-||.|+++|+.++... .+-.|...|.||.+.+....+++|++|++|++||.+. +.++.
T Consensus 54 ~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~~~ 130 (323)
T KOG1036|consen 54 GAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVVVG 130 (323)
T ss_pred CCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccccc
Confidence 88999999986 557999999999999999987654 4567999999999999888999999999999999997 33344
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEE-----Eec-cCceeeecCCCEEEEEecCCeEEE---
Q 004603 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKV-CNLMPIILKGCFILNSIFNCYLLL--- 705 (743)
Q Consensus 635 ~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~-----~~~-~~~i~~s~~g~~l~sgs~Dg~I~v--- 705 (743)
++. ....|.+++..- . .|+.|+.|..|.+||+++...... ++. ..++++.|.+.-.++++-||+|.+
T Consensus 131 ~~d-~~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~ 206 (323)
T KOG1036|consen 131 TFD-QGKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYF 206 (323)
T ss_pred ccc-cCceEEEEeccC--C-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEcc
Confidence 444 334788888763 3 555777799999999998654331 222 244677788888888999999888
Q ss_pred ---------------Eec---------ccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 706 ---------------HRI---------FLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 706 ---------------h~~---------~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|.. .+..+++.+. .+.++|||.||.|.+||-.
T Consensus 207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~--~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI--HGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred CCchHHhhhceeEEeeecccCCceEEEEeceeEeccc--cceEEecCCCceEEEccCc
Confidence 221 2455666555 5689999999999999864
No 108
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=1.6e-17 Score=173.07 Aligned_cols=201 Identities=17% Similarity=0.256 Sum_probs=148.2
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~ 585 (743)
.+.++=+..|.|.+|+...-.......... .......++.++.+|.+.=+.++||| ....|+||..-+.|++|...
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~---~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLE---VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCcccc---ccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence 456666778899999665432211111111 12245678999999999999999999 22358888888899999988
Q ss_pred CCeEE---EEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC-eeEEEEecCCCCeEEEEEecCCCcEEEEEe
Q 004603 586 SFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 586 t~~~i---~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~-~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs 660 (743)
++.-. .-|.+|+..|..++|+|. ...|+||+.||+|+|||+|.+. ......+.|.+.|+.|.|+..-. +|++|+
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~ 321 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGG 321 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecC
Confidence 75532 346789999999999995 6789999999999999999862 22333488999999999998866 999999
Q ss_pred CCCcEEEEECCC---CeeeEEEeccC----ceeeecC-CCEEEEEecCCeEEEEecccc
Q 004603 661 NNSEIRYWSINN---GSCAGVFKVCN----LMPIILK-GCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 661 ~Dg~IrvWDl~t---g~~v~~~~~~~----~i~~s~~-g~~l~sgs~Dg~I~vh~~~v~ 711 (743)
.||+++|||+|. ++++..|+.|. ++.++|. ...|++++.|..|.+|+..+.
T Consensus 322 DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 322 DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999999985 45667777653 3455543 344556666777777766543
No 109
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.2e-16 Score=162.92 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=151.9
Q ss_pred cccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004603 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (743)
+...+..-+.++.|+..| +.+++|+.|.+|++|++..+ ..++......+.
T Consensus 8 i~s~h~DlihdVs~D~~G---------------RRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wra 57 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYG---------------RRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRA 57 (361)
T ss_pred cccCCcceeeeeeecccC---------------ceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEe
Confidence 333444556677777766 68999999999999977443 346677788899
Q ss_pred CCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECC---------CCeEEEEEcccCCCEEEEEEcCC--CCEEEEEeCCCe
Q 004603 554 STSKVESCHFSP--DGKLLATGGHDKKAVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRT 620 (743)
Q Consensus 554 H~~~V~siafsp--dg~~LaSgs~Dg~V~IWd~~---------t~~~i~~l~~H~~~V~~vafsp~--~~~LaSgs~Dg~ 620 (743)
|.+.|..|.|.+ -|..||+++.|++|+||.=. ......++......|++|.|.|. |-.+++++.||+
T Consensus 58 h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~ 137 (361)
T KOG2445|consen 58 HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI 137 (361)
T ss_pred cCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE
Confidence 999999999965 78999999999999999641 12344566777889999999994 778999999999
Q ss_pred EEEEECCCCCe------------------------------------------------------------------eEE
Q 004603 621 VRVWDTENPDY------------------------------------------------------------------SLR 634 (743)
Q Consensus 621 VrvWDl~~~~~------------------------------------------------------------------~l~ 634 (743)
||||+.-.... .+.
T Consensus 138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva 217 (361)
T KOG2445|consen 138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA 217 (361)
T ss_pred EEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh
Confidence 99998632110 022
Q ss_pred EEecCCCCeEEEEEecCC---CcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEEecccc
Q 004603 635 TFTGHSTTVMSLDFHPSK---EDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 635 ~l~~h~~~V~sl~fsp~g---~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~ 711 (743)
++.+|..+|++|+|.|.- .++|++++.|| |+||.+......-.-.....-..--+-.....+..|+ |...+-
T Consensus 218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~----H~~~VW 292 (361)
T KOG2445|consen 218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD----HNGEVW 292 (361)
T ss_pred hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC----CCCceE
Confidence 344678889999998862 34788888888 9999887422100000000000000001111111111 222222
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 712 LLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 712 ~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
.+.|... +..|++.|.||+|++|+-.|
T Consensus 293 rv~wNmt--GtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 293 RVRWNMT--GTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEEEeee--eeEEeecCCCceeeehhhhh
Confidence 3333333 66888888888888887665
No 110
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.6e-16 Score=159.79 Aligned_cols=189 Identities=16% Similarity=0.161 Sum_probs=149.8
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW 624 (743)
.+.++.+.||...|++|+.+|-+..|++++.|++|++||++..++...+.-- .-..++|+|+|-++|++.....|++|
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEE
Confidence 3688999999999999999998899999999999999999987777666432 33467899999999999988899999
Q ss_pred ECCCC-CeeEEEEec---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC-------ceeeecCCCE
Q 004603 625 DTENP-DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-------LMPIILKGCF 693 (743)
Q Consensus 625 Dl~~~-~~~l~~l~~---h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~-------~i~~s~~g~~ 693 (743)
|+|.- +.+..++.- .....+.|.|+|+|+.+|++ ...+.+++.|.-+|....++..+. ..+|.|++.+
T Consensus 168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 99875 445555543 35678999999999988855 447789999999999888887652 3668899999
Q ss_pred EEEEecCCeEEEEecccceEEEEecC-----------CCCEEEEEeCCCeEEEe
Q 004603 694 ILNSIFNCYLLLHRIFLNLLSVSEWC-----------NPDEISTSSWKDSCCSH 736 (743)
Q Consensus 694 l~sgs~Dg~I~vh~~~v~~l~v~~~~-----------~~~~laSgs~DG~V~iW 736 (743)
+++|+.||+|.+|..........+.. ++.+..-.+.+..+.+|
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw 300 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFW 300 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEE
Confidence 99999999999998754322222211 14566666677777777
No 111
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.75 E-value=8.7e-17 Score=161.27 Aligned_cols=189 Identities=16% Similarity=0.112 Sum_probs=158.0
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 550 ~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~ 629 (743)
.+.+|..+|+-|.|+.+|.+|++|+.|.++.||-..+|+.+-++.||++.|+|++.+.+.++++||+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46789999999999999999999999999999999899999999999999999999999999999999999999999998
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCcEEEEE----eCCCcEEEEECC-------CCeeeEEEecc----CceeeecCCCEE
Q 004603 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSC----DNNSEIRYWSIN-------NGSCAGVFKVC----NLMPIILKGCFI 694 (743)
Q Consensus 630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg----s~Dg~IrvWDl~-------tg~~v~~~~~~----~~i~~s~~g~~l 694 (743)
+. +..++ ...+|..+.|+++|..++++. +..+.|.++|++ ..+++..+..+ +...+.+.+.+|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 86 66665 467899999999988666443 233689999998 34455555543 335688999999
Q ss_pred EEEecCCeEEEEecccce-------------EEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 695 LNSIFNCYLLLHRIFLNL-------------LSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 695 ~sgs~Dg~I~vh~~~v~~-------------l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
++|.+||.|..|+..... -.+.+..+..++++++.|.+.++||-.-
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 999999999998876421 1223344578999999999999998654
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.75 E-value=2.8e-17 Score=176.75 Aligned_cols=190 Identities=12% Similarity=0.139 Sum_probs=140.2
Q ss_pred EEEeeCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-EEEEEc-----ccCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603 548 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLE-----EHTQWITDVRFSPSLSRLATSSADRT 620 (743)
Q Consensus 548 ~~~l~~H~~~V~siafspdg-~~LaSgs~Dg~V~IWd~~t~~-~i~~l~-----~H~~~V~~vafsp~~~~LaSgs~Dg~ 620 (743)
+..-+||...++|.+|+|+. ..|+|++.|++++|||+.+.+ .+.+|+ +-.-.|+.++|++++++||+|+.||.
T Consensus 261 m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS 340 (641)
T KOG0772|consen 261 MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS 340 (641)
T ss_pred hhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc
Confidence 44557999999999999954 579999999999999998644 233332 33456899999999999999999999
Q ss_pred EEEEECCCCCe--eEEEEecCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEec------cCceeeec
Q 004603 621 VRVWDTENPDY--SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKV------CNLMPIIL 689 (743)
Q Consensus 621 VrvWDl~~~~~--~l~~l~~h~~--~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~------~~~i~~s~ 689 (743)
|.+||...... ....-..|.. .|+||.|+++|.. |++-+.|++++|||++.. +++.+..+ .+.++|+|
T Consensus 341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 341 IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred eeeeecCCcccccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence 99999754221 1233456776 8999999999985 558889999999999974 56665554 35689999
Q ss_pred CCCEEEEEec------CCeEEEEe---------ccc---ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 690 KGCFILNSIF------NCYLLLHR---------IFL---NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 690 ~g~~l~sgs~------Dg~I~vh~---------~~v---~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+...|++|+. .+++.+.+ +.+ .+..+.+...-..|+.|+.||++++|-+
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 9999999864 34454422 111 1222222333467999999999998744
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1e-17 Score=173.73 Aligned_cols=232 Identities=13% Similarity=0.188 Sum_probs=175.8
Q ss_pred ccccCCCCCceEEEEecCCCccc---ccc---CccccCCCCEEEEeeCCCcEEEEecCCCCC------------------
Q 004603 473 TLQHNGASSKSLLMFGSDGMGSL---TSA---PNQLTDMDRFVDDGSLDDNVESFLSPDDAD------------------ 528 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~dg~~~l---~~~---~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~------------------ 528 (743)
....+|+.+..++.|+.....++ ... ...|.-....+.+++.|.+|+.|.......
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN 159 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence 34567888999999988764221 111 111211225667888899999997433210
Q ss_pred -CCC---ccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEE
Q 004603 529 -PRD---RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603 (743)
Q Consensus 529 -~~~---~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~v 603 (743)
... .-+.+|+.. ...++..+.--.+.|.||.|+| ....|++|+.|+.|.|||++...++..+.- +..-..|
T Consensus 160 ~~FaTcGe~i~IWD~~---R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~I 235 (433)
T KOG0268|consen 160 SVFATCGEQIDIWDEQ---RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTI 235 (433)
T ss_pred ccccccCceeeecccc---cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccce
Confidence 000 112344433 3356777788888999999999 455788888999999999999888766542 3445789
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec--
Q 004603 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-- 681 (743)
Q Consensus 604 afsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-- 681 (743)
+|+|++-.|++|+.|..++.||++....++..+.+|.+.|.+|+|+|.|.. |++||.|.+||||..+.+.....+..
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRdiYhtkR 314 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRDIYHTKR 314 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcchhhhhHhh
Confidence 999988889999999999999999988899999999999999999999985 55999999999999998876544432
Q ss_pred ---cCceeeecCCCEEEEEecCCeEEEEecc
Q 004603 682 ---CNLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 682 ---~~~i~~s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
.-++.++.|..|+++|++|+.|++|...
T Consensus 315 Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 315 MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 3457799999999999999999999764
No 114
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.74 E-value=1.8e-17 Score=164.54 Aligned_cols=198 Identities=16% Similarity=0.236 Sum_probs=162.0
Q ss_pred ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004603 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (743)
Q Consensus 475 ~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (743)
.+.+.+.+..+.|+-|. +.|.+|+.+.-+++|+..... .+...+.+|
T Consensus 96 sf~hkhivk~~af~~ds---------------~~lltgg~ekllrvfdln~p~------------------App~E~~gh 142 (334)
T KOG0278|consen 96 SFEHKHIVKAVAFSQDS---------------NYLLTGGQEKLLRVFDLNRPK------------------APPKEISGH 142 (334)
T ss_pred hhhhhheeeeEEecccc---------------hhhhccchHHHhhhhhccCCC------------------CCchhhcCC
Confidence 34445555666666554 688999999999999665431 344667899
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~ 634 (743)
++.|..+-|+...+.|+++.+|++||+||.+++..+.++.- ...|+++.++++|++|.++ ..+.|++||..+... +.
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~-lK 219 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL-LK 219 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccc-ee
Confidence 99999999999888999999999999999999999998864 5679999999999877655 578899999988654 55
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE-ecc----CceeeecCCCEEEEEecCCeEEEEecc
Q 004603 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KVC----NLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 635 ~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~-~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
.++ ....|.+..++|+. .++++|+.|..++.||..+++.+..+ ++| .++.|+|+|...++|+.||+|++|...
T Consensus 220 s~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 220 SYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ecc-CccccccccccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 554 34568899999997 58889999999999999999998886 555 457899999999999999999999765
Q ss_pred c
Q 004603 710 L 710 (743)
Q Consensus 710 v 710 (743)
.
T Consensus 298 ~ 298 (334)
T KOG0278|consen 298 P 298 (334)
T ss_pred C
Confidence 4
No 115
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=3.3e-17 Score=170.79 Aligned_cols=199 Identities=16% Similarity=0.275 Sum_probs=145.4
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004603 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 508 ~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t 586 (743)
.+.+|..-+.|++|...++. |.. ....+.+|+..|..++||| ....|++||.||+|+|||++.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~---------W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGS---------WKV-------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred ccccCccccceEeeeeccCc---------eee-------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 35677777888888544431 211 1233567999999999999 556999999999999999998
Q ss_pred C---eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603 587 F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 587 ~---~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~ 661 (743)
+ .++.+ +.|.+.|..|.|+....+|++|+.||+++|||+|..+ .++.+|+.|..+|++|.|+|.....|++++.
T Consensus 290 ~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 290 GPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred CCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence 7 34433 7899999999999987799999999999999998643 4688999999999999999998888999999
Q ss_pred CCcEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecCCeEEEE--ecccceEEEEecCCCCEEEEEeCCCeEE
Q 004603 662 NSEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNCYLLLH--RIFLNLLSVSEWCNPDEISTSSWKDSCC 734 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~Dg~I~vh--~~~v~~l~v~~~~~~~~laSgs~DG~V~ 734 (743)
|..|.+||+....-...... ...+.-.|.- .+.|| ...++-+.|+... ++++++.+.||...
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQ----------LLFVHqGQke~KevhWH~Qi-PG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQ----------LLFVHQGQKEVKEVHWHRQI-PGLLVSTAIDGFNV 434 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCce----------eEEEecchhHhhhheeccCC-CCeEEEecccceeE
Confidence 99999999874322111100 0000000110 12223 3456667777665 78999999998643
No 116
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=4.8e-17 Score=170.40 Aligned_cols=188 Identities=18% Similarity=0.237 Sum_probs=147.7
Q ss_pred eeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEEcccCCCEEEEEEcCC-CCEEEEEe
Q 004603 546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPS-LSRLATSS 616 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-------~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs 616 (743)
..+-.+.+|+++|..++|+| +...||+||+|.+|+||.+.. .+++..+.+|...|..|+|||. .+.|+|++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 34556789999999999999 677899999999999999854 3567789999999999999996 67889999
Q ss_pred CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc-----eeeecCC
Q 004603 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKG 691 (743)
Q Consensus 617 ~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g 691 (743)
.|.+|.+||+.++.. +.++. |...|++++|+.+|. +|++.+.|+.|||||.++++.+..-.+|.. ..|..+|
T Consensus 152 ~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 999999999999886 55565 999999999999987 788999999999999999999988766643 5577788
Q ss_pred CEEEEEe---cCCeEEEEeccc--------------ceEEEEecCCCCE-EEEEeCCCeEEEe
Q 004603 692 CFILNSI---FNCYLLLHRIFL--------------NLLSVSEWCNPDE-ISTSSWKDSCCSH 736 (743)
Q Consensus 692 ~~l~sgs---~Dg~I~vh~~~v--------------~~l~v~~~~~~~~-laSgs~DG~V~iW 736 (743)
.++.+|. .+..+.+|+... .++---.+.+... .++|=.|+.|+.|
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 8555553 355677765321 1111112223344 4555689999988
No 117
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6e-17 Score=179.53 Aligned_cols=186 Identities=21% Similarity=0.316 Sum_probs=157.3
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
...+.+|+.|+.|..++..... ..+.++.+|...|+.+.|++|+++||+|+.|+.|.|||..
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~------------------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQ------------------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred CceEEEecCCCcEEEEEEecch------------------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 4788999999999999664432 1111378999999999999999999999999999999998
Q ss_pred CCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeC--CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE-eC
Q 004603 586 SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DN 661 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~--Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg-s~ 661 (743)
...++..+.+|.+.|.+++|+| ...+||+|+. |++|++||+.++.. +.... ..+-|++|.|++....++.+. ..
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-IDSVD-TGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-ecccc-cCCceeeEEEcCCCCEEEEecCCC
Confidence 8889999999999999999999 5778998865 99999999998764 44443 457899999999987676554 45
Q ss_pred CCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEecccc
Q 004603 662 NSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v~ 711 (743)
+..|.||+..+.+.+..+.+|+. +.++|+|.++++|+.|.++++|.....
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 67899999999999999999865 568899999999999999999977653
No 118
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.73 E-value=4.8e-17 Score=178.81 Aligned_cols=214 Identities=19% Similarity=0.206 Sum_probs=156.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
+..|++.+-|.++++|+.... ...-...+.||++.|.+++|.| +...|++|+.||.|.|||+
T Consensus 112 e~~lVsasGDsT~r~Wdvk~s-----------------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 112 ESLLVSASGDSTIRPWDVKTS-----------------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ceeEEEccCCceeeeeeeccc-----------------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 467888899999999955433 2333345789999999999999 5568999999999999998
Q ss_pred CCCe---------------------------EEEEEcccCCCEEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCCee-
Q 004603 585 ESFT---------------------------VKSTLEEHTQWITD---VRFSPSLSRLATSSA-DRTVRVWDTENPDYS- 632 (743)
Q Consensus 585 ~t~~---------------------------~i~~l~~H~~~V~~---vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~~- 632 (743)
+-.. .++....|...|.. +.+.-|...||+++. |+.|+|||+++....
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 6211 11122344455555 555567889999988 999999999875431
Q ss_pred ------EEEEecC---CCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe--eeEEEeccC------ceeeecCCCEEE
Q 004603 633 ------LRTFTGH---STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKVCN------LMPIILKGCFIL 695 (743)
Q Consensus 633 ------l~~l~~h---~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~--~v~~~~~~~------~i~~s~~g~~l~ 695 (743)
+..+..| .-.+.+|+.+..|.+++|+|. |+.|++||+.+.. .+..+.++. .-..++++++|+
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 1122223 235778888888999998888 9999999998643 344444432 235779999999
Q ss_pred EEecCCeEEEEe---------------cccceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 696 NSIFNCYLLLHR---------------IFLNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 696 sgs~Dg~I~vh~---------------~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+|+.|....+|. ..+..+.|.+.. ..-+++|+.|-+|++|+.
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~-~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA-TTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc-CCCceeeccCcceEEEec
Confidence 999999988854 345566666554 567888899999999985
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=1.1e-16 Score=170.78 Aligned_cols=182 Identities=17% Similarity=0.268 Sum_probs=156.0
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
+|+++|+.|..|.+|.. .+...+..+++|.+.|.+++|-.....+++++.|++|++|+++.
T Consensus 215 kylatgg~d~~v~Iw~~-------------------~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDC-------------------DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cEEEecCCCceEEEecC-------------------cccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 79999999999999944 34466777999999999999988777899999999999999999
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir 666 (743)
...+.++.||.+.|..|....-++.+.+|+.|+++++|++.. .....|.+|.+.+-|++|..+. -|++|+.||.|.
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIA 351 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEE
Confidence 889999999999999998877677777777999999999943 3467888999999999999774 366999999999
Q ss_pred EEECCCCeeeEEEecc----------------CceeeecCCCEEEEEecCCeEEEEecccc
Q 004603 667 YWSINNGSCAGVFKVC----------------NLMPIILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 667 vWDl~tg~~v~~~~~~----------------~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~ 711 (743)
+|++.+.+++.+.... +.+...+....+++|+.+|.|++|.....
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 9999999988877631 23566788899999999999999976543
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.6e-17 Score=161.47 Aligned_cols=189 Identities=21% Similarity=0.313 Sum_probs=151.3
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp--dg~~LaSgs~Dg~V~IWd 583 (743)
+.+|+++++|+.|-+|....+ .+........|...|++|+|.| -|-.|++|+.||+|.|.+
T Consensus 70 G~iLAScsYDgkVIiWke~~g-----------------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~ 132 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENG-----------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT 132 (299)
T ss_pred CcEeeEeecCceEEEEecCCC-----------------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence 689999999999999944332 4556677788999999999999 456899999999999998
Q ss_pred CCCC---eEEEEEcccCCCEEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCCee-EEEEecCCCCeEE
Q 004603 584 TESF---TVKSTLEEHTQWITDVRFSPS---L-----------SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMS 645 (743)
Q Consensus 584 ~~t~---~~i~~l~~H~~~V~~vafsp~---~-----------~~LaSgs~Dg~VrvWDl~~~~~~-l~~l~~h~~~V~s 645 (743)
+++. ........|.-.|++|+|.|. | ..|+||+.|..|+||+...+... -+++.+|.+.|..
T Consensus 133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD 212 (299)
T ss_pred EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence 8753 223445689999999999995 4 56999999999999999875432 2458999999999
Q ss_pred EEEecCC---CcEEEEEeCCCcEEEEECCCC------eeeEEEecc-CceeeecCCCEEEEEecCCeEEEEecccc
Q 004603 646 LDFHPSK---EDLLCSCDNNSEIRYWSINNG------SCAGVFKVC-NLMPIILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 646 l~fsp~g---~~lL~Sgs~Dg~IrvWDl~tg------~~v~~~~~~-~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~ 711 (743)
++|+|.- ...+++|+.||+|.||-.+.. +.++.|... -.+.++..|++|++++.|+.|++|...+.
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 9999973 457899999999999987622 223333221 23678999999999999999999987654
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.5e-16 Score=178.26 Aligned_cols=219 Identities=17% Similarity=0.219 Sum_probs=176.4
Q ss_pred ceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEE
Q 004603 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (743)
Q Consensus 482 ~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si 561 (743)
...+.|.++| .||++++.|+.|++|....+. ..-.++.-|...|.+|
T Consensus 16 ~t~i~~d~~g---------------efi~tcgsdg~ir~~~~~sd~------------------e~P~ti~~~g~~v~~i 62 (933)
T KOG1274|consen 16 LTLICYDPDG---------------EFICTCGSDGDIRKWKTNSDE------------------EEPETIDISGELVSSI 62 (933)
T ss_pred eEEEEEcCCC---------------CEEEEecCCCceEEeecCCcc------------------cCCchhhccCceeEEE
Confidence 5566666666 699999999999999555442 1111222266778888
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC
Q 004603 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641 (743)
Q Consensus 562 afspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~ 641 (743)
+. ++++|++|+.+++|.+|...+++.-..+...+-++.+++|+-+|.++|.|+.|-.|++-++.+... ..++++|..
T Consensus 63 a~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~a 139 (933)
T KOG1274|consen 63 AC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDA 139 (933)
T ss_pred ee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-heeecccCC
Confidence 87 455999999999999999998776656666678899999999999999999999999999988665 788999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc------------CceeeecCCCEEEEEecCCeEEEEec-
Q 004603 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC------------NLMPIILKGCFILNSIFNCYLLLHRI- 708 (743)
Q Consensus 642 ~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~------------~~i~~s~~g~~l~sgs~Dg~I~vh~~- 708 (743)
+|.+|.|+|.+. +||+.+.||.|+|||+.++.+..++.+. ....|+|+|..++....|+.|++.+.
T Consensus 140 pVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 140 PVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred ceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 999999999976 7888888999999999999887777642 23679999988888888999988321
Q ss_pred ---------------ccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 709 ---------------FLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 709 ---------------~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
....+.|++. +.|||+++-||.|.|||-.
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPn--G~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPN--GKYIAASTLDGQILVWNVD 262 (933)
T ss_pred CceeheeecccccccceEEEEEcCC--CcEEeeeccCCcEEEEecc
Confidence 1234444444 8899999999999999976
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.1e-16 Score=165.58 Aligned_cols=200 Identities=16% Similarity=0.261 Sum_probs=161.3
Q ss_pred ccccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEE
Q 004603 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL 550 (743)
Q Consensus 471 ~~~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (743)
.++..+.....++++.|||.. .++.+++.|+++++|-. ++.....+..
T Consensus 205 DaNa~~ps~~~I~sv~FHp~~---------------plllvaG~d~~lrifqv-----------------DGk~N~~lqS 252 (514)
T KOG2055|consen 205 DANAAHPSHGGITSVQFHPTA---------------PLLLVAGLDGTLRIFQV-----------------DGKVNPKLQS 252 (514)
T ss_pred ccccCCcCcCCceEEEecCCC---------------ceEEEecCCCcEEEEEe-----------------cCccChhhee
Confidence 445555556678888999866 58899999999999943 3333445666
Q ss_pred eeCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEE--EEEcccC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004603 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK--STLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 551 l~~H~~~V~siafspdg~-~LaSgs~Dg~V~IWd~~t~~~i--~~l~~H~-~~V~~vafsp~~~~LaSgs~Dg~VrvWDl 626 (743)
+.-...+|.+++|.|+|. .+++++..+.++.||+.+.+.. ..+.++. ..+....+++++++|+..+..|.|.+.-.
T Consensus 253 ~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha 332 (514)
T KOG2055|consen 253 IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA 332 (514)
T ss_pred eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehh
Confidence 666778899999999999 8999999999999999886543 2334443 34667778999999999999999999998
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec-----cCceeeecCCCEEEEEecCC
Q 004603 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-----CNLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 627 ~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-----~~~i~~s~~g~~l~sgs~Dg 701 (743)
.++.. +.+++ -.+.|.+++|+.+++.++++| .+|.|.+||++...|++.+.. .+.++.+++|.|+++|+..|
T Consensus 333 kT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G 409 (514)
T KOG2055|consen 333 KTKEL-ITSFK-IEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG 409 (514)
T ss_pred hhhhh-hheee-eccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc
Confidence 88654 66666 568899999999998777555 488999999999999998874 35588889999999999999
Q ss_pred eEEE
Q 004603 702 YLLL 705 (743)
Q Consensus 702 ~I~v 705 (743)
.|.|
T Consensus 410 iVNI 413 (514)
T KOG2055|consen 410 IVNI 413 (514)
T ss_pred eEEE
Confidence 9998
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=7.3e-16 Score=156.31 Aligned_cols=225 Identities=21% Similarity=0.280 Sum_probs=164.0
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
...++.+.|-|-.+ .+..++|+|.++++|+... ....-.|+ -.+.|
T Consensus 101 ky~iss~~WyP~Dt--------------GmFtssSFDhtlKVWDtnT-------------------lQ~a~~F~-me~~V 146 (397)
T KOG4283|consen 101 KYAISSAIWYPIDT--------------GMFTSSSFDHTLKVWDTNT-------------------LQEAVDFK-MEGKV 146 (397)
T ss_pred eeeeeeeEEeeecC--------------ceeecccccceEEEeeccc-------------------ceeeEEee-cCcee
Confidence 34555666766444 4678899999999994433 22222222 24568
Q ss_pred EEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeEE
Q 004603 559 ESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 559 ~siafsp---dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~-LaSgs~Dg~VrvWDl~~~~~~l~ 634 (743)
++-+|+| .-.+||+|..|-.|++.|+.+|.+-.++.||+..|.+|.|+|...+ |+||+.||.||+||++....|+.
T Consensus 147 YshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~ 226 (397)
T KOG4283|consen 147 YSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFR 226 (397)
T ss_pred ehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeE
Confidence 8888888 3458889999999999999999999999999999999999997654 68999999999999997655555
Q ss_pred EEe--------------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE-EEe----------------cc-
Q 004603 635 TFT--------------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK----------------VC- 682 (743)
Q Consensus 635 ~l~--------------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~-~~~----------------~~- 682 (743)
++. .|.+.|.+++|..++.+++ +++.|..+++|+..+|+..- .+. .+
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~-~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s 305 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA-SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDS 305 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecccchhhh-hccCccceEEeecccCcccccccccccccccccceEEEeeccc
Confidence 543 5667899999999987555 88889999999998875321 110 01
Q ss_pred Cceeeec--CCCEEEEEecCCeEEEEecccceEEEEecC-CCCEEEEEeCCCeEEEeCC
Q 004603 683 NLMPIIL--KGCFILNSIFNCYLLLHRIFLNLLSVSEWC-NPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 683 ~~i~~s~--~g~~l~sgs~Dg~I~vh~~~v~~l~v~~~~-~~~~laSgs~DG~V~iWd~ 738 (743)
..+.+.| ++-+|++......|+.|+...+.+..+... +-...++|..|+.+..|-.
T Consensus 306 ~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 306 DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 1122333 333566666677788887776665555443 2467899999999999964
No 124
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.71 E-value=3.2e-16 Score=156.86 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=152.2
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004603 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 625 (743)
Q Consensus 549 ~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWD 625 (743)
+.+.+|..+|.+|+|+.+|+.|++|+.|++++||+++..+... ...+|++.|-.++|+| ...+|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5567899999999999999999999999999999998764333 4478999999999998 578999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEecCCe
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNCY 702 (743)
Q Consensus 626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~Dg~ 702 (743)
++.+++ +...... ..-.-++|+|+|.+ ++.++.|..|.+.|.++.+.+....- ...+++..++.+++.....|+
T Consensus 94 ~r~~k~-~~~i~~~-~eni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKC-TARIETK-GENINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcE-EEEeecc-CcceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 999776 4444322 33345899999884 55788888999999999887765543 244677777777777777788
Q ss_pred EEEE------------ecccceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 703 LLLH------------RIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 703 I~vh------------~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
|.|- .....++++.+++++.++|+|+.|..|-+||-.=
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence 7772 2236788888888899999999999999998653
No 125
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=3.3e-16 Score=166.50 Aligned_cols=186 Identities=18% Similarity=0.230 Sum_probs=147.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
.++|++||.|.+|++|+...+ ++..++..|.+.|.++.|+| ...+|++|+.|++|++.|+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g-------------------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTG-------------------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ceeEEecCCCceEEEEEcCCC-------------------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 479999999999999966554 56777888999999999999 6779999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg 663 (743)
+........-.-.+.|-.++|+|. ...++++..||+|+-+|+|....++.++..|.+.|.+|++++..+.++++++.|+
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 853222222223567999999995 5677888899999999999998899999999999999999999999999999999
Q ss_pred cEEEEECCCCee--e--EEEecc--CceeeecCCC-EEEEEecCCeEEEEeccc
Q 004603 664 EIRYWSINNGSC--A--GVFKVC--NLMPIILKGC-FILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 664 ~IrvWDl~tg~~--v--~~~~~~--~~i~~s~~g~-~l~sgs~Dg~I~vh~~~v 710 (743)
.|++|++..... + +.++.. .++.+.|+.. +++.|+..+.++||+...
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 999999874332 2 222222 2233445444 467788888899998754
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=1.1e-16 Score=171.30 Aligned_cols=218 Identities=18% Similarity=0.178 Sum_probs=166.0
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004603 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (743)
Q Consensus 502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~I 581 (743)
+....+-|.+|+.-.++.+|+.... +......+....-.+++++.+||.++.++++.||.|.|
T Consensus 473 L~pdgrtLivGGeastlsiWDLAap-----------------TprikaeltssapaCyALa~spDakvcFsccsdGnI~v 535 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAP-----------------TPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAV 535 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCC-----------------CcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEE
Confidence 4445566777777788888855433 22223333444455788999999999999999999999
Q ss_pred EECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 582 Wd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~ 661 (743)
||+.+...++.|.||++.+.||.++++|..|-||+-|.+||.||+++++. +... ...+-|.+|-++|.+++++ .|-+
T Consensus 536 wDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-lqqh-dF~SQIfSLg~cP~~dWla-vGMe 612 (705)
T KOG0639|consen 536 WDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-LQQH-DFSSQIFSLGYCPTGDWLA-VGME 612 (705)
T ss_pred EEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-hhhh-hhhhhheecccCCCcccee-eecc
Confidence 99999999999999999999999999999999999999999999998664 2211 2347799999999988554 7888
Q ss_pred CCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEEecCCCCEEEE
Q 004603 662 NSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEIST 726 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v-----------~~l~v~~~~~~~~laS 726 (743)
++.|.|-.....+ ...+..|.. +.|.+.|.|+++.+.|+.+..|+..- .+++.....+..+|+|
T Consensus 613 ns~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 613 NSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVT 691 (705)
T ss_pred cCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEe
Confidence 8888777765433 233333433 45789999999999999999986542 2333344445789999
Q ss_pred EeCCCeEEEeCCCc
Q 004603 727 SSWKDSCCSHRELY 740 (743)
Q Consensus 727 gs~DG~V~iWd~~~ 740 (743)
|+.|....||.-.|
T Consensus 692 GSGdkkATVYeV~Y 705 (705)
T KOG0639|consen 692 GSGDKKATVYEVIY 705 (705)
T ss_pred cCCCcceEEEEEeC
Confidence 99998888875443
No 127
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=5.8e-16 Score=156.75 Aligned_cols=193 Identities=20% Similarity=0.291 Sum_probs=150.5
Q ss_pred CceeeeEEEee-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEE-----cccCCCEEEEEEcC--CCCEE
Q 004603 542 GFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRL 612 (743)
Q Consensus 542 ~~~~~~~~~l~-~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~-i~~l-----~~H~~~V~~vafsp--~~~~L 612 (743)
..++..+..+. .+-+.|.||.|.|++..+++-. |..|.+|++..... +..+ .+|....++-+|+| +++.+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 34456666665 6777999999999999988876 88999999987654 3333 24566788899999 68888
Q ss_pred EEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEeccCcee----e
Q 004603 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCNLMP----I 687 (743)
Q Consensus 613 aSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~~i~----~ 687 (743)
++.+ |++++.||+|+..+....-..|...|.+++|+|+..++|++|+.||.|||||.|.- ..+.++.+|.... |
T Consensus 188 ~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 188 ATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred EEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 8765 99999999998765444555788889999999999999999999999999999964 5678888887644 3
Q ss_pred ec-CCCEEEEEecCCeEEE-------------------------------------------EecccceEEEEecCCCCE
Q 004603 688 IL-KGCFILNSIFNCYLLL-------------------------------------------HRIFLNLLSVSEWCNPDE 723 (743)
Q Consensus 688 s~-~g~~l~sgs~Dg~I~v-------------------------------------------h~~~v~~l~v~~~~~~~~ 723 (743)
.| ...+|++|+.|..|.+ |..++.+++|+.. ++-.
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa-dPWi 345 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA-DPWI 345 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC-CCee
Confidence 33 3457888999988887 3334556666654 3778
Q ss_pred EEEEeCCCeEEEeC
Q 004603 724 ISTSSWKDSCCSHR 737 (743)
Q Consensus 724 laSgs~DG~V~iWd 737 (743)
+|+-++||+|.|=+
T Consensus 346 FASLSYDGRviIs~ 359 (370)
T KOG1007|consen 346 FASLSYDGRVIISS 359 (370)
T ss_pred EEEeccCceEEeec
Confidence 99999999998854
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=8.2e-16 Score=175.30 Aligned_cols=194 Identities=20% Similarity=0.246 Sum_probs=158.7
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
...+++|+.+++|..+....+. +-..+...+-++.+++|+-+|+++|.||+|-.|++.++.
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~-------------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~ 126 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGE-------------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD 126 (933)
T ss_pred ccceEEeeccceEEEeeCCCCC-------------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc
Confidence 4578899999999999665542 122333445679999999999999999999999999999
Q ss_pred CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--------CCCCeEEEEEecCCCcEEE
Q 004603 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------HSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~--------h~~~V~sl~fsp~g~~lL~ 657 (743)
+.....++++|.+.|.+|.|+|.+.+||+.+.||.|+|||+.++.. ..++.+ ....++.++|+|++..+++
T Consensus 127 D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 127 DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 9999999999999999999999999999999999999999987653 343332 1345678999999877775
Q ss_pred EEeCCCcEEEEECCCCeeeEEEecc------CceeeecCCCEEEEEecCCeEEEEecc----------cceEEEEecCC
Q 004603 658 SCDNNSEIRYWSINNGSCAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF----------LNLLSVSEWCN 720 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~~------~~i~~s~~g~~l~sgs~Dg~I~vh~~~----------v~~l~v~~~~~ 720 (743)
.+. |+.|++|+...++....+... ..+.|+|+|.||++++.||.|.||+.. +.+++|.+.++
T Consensus 206 ~~~-d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 206 PPV-DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNAN 283 (933)
T ss_pred ecc-CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCC
Confidence 554 889999999999888777642 336799999999999999999999877 55666666654
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=1.4e-15 Score=155.08 Aligned_cols=180 Identities=13% Similarity=0.258 Sum_probs=142.0
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEE-EEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603 553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 553 ~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-~~~i-~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~ 629 (743)
.-.+.|.+|+||| ...+++.||.|++||+|++.. +..+ .....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467799999999 666788999999999999976 2322 345679999999999999999999999999999999987
Q ss_pred CeeEEEEecCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEECCCCeeeEEEeccCc-eeeecCCCEEEEEecCCeEEEEe
Q 004603 630 DYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-MPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 630 ~~~l~~l~~h~~~V~sl~fsp~g~-~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-i~~s~~g~~l~sgs~Dg~I~vh~ 707 (743)
. +..+..|..+|.++.|-+... .+|++||.|++||+||+|....+.++..... .+....-..++++..++.|.+..
T Consensus 105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 5 677888999999999987533 3789999999999999999988888876533 34444555677777787777754
Q ss_pred cc----------------cceEEEEecCCCCEEEEEeCCCeEEEe
Q 004603 708 IF----------------LNLLSVSEWCNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 708 ~~----------------v~~l~v~~~~~~~~laSgs~DG~V~iW 736 (743)
.. +++++... +....+-|+.+|+|-|.
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~--d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQ--DKDGFALGSIEGRVAIQ 225 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEe--cCCceEeeeecceEEEE
Confidence 42 23333333 35566999999998875
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=156.54 Aligned_cols=192 Identities=17% Similarity=0.186 Sum_probs=139.7
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEEcccCCCEEEEEEcCCCCEE-EEEeCCCeE
Q 004603 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTV 621 (743)
Q Consensus 548 ~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~-----~i~~l~~H~~~V~~vafsp~~~~L-aSgs~Dg~V 621 (743)
+..+++|.+.|+|++|+.||++|+|++.|++|+||+++... +++.-. .-+..+.|+|.||.+-+ +++-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 46688999999999999999999999999999999998632 111111 12246789999987655 455557789
Q ss_pred EEEECCCCC---eeEE--------EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----Ccee
Q 004603 622 RVWDTENPD---YSLR--------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMP 686 (743)
Q Consensus 622 rvWDl~~~~---~~l~--------~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~ 686 (743)
++|.+...+ .+.. .-+.|.-.|.++-.... ..++++|+.|..|.+||++ |+.+..+... ...+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 999875322 1111 11234445555555444 4578899999999999999 8888777643 3367
Q ss_pred eecCCCEEEEEecCCeEEEEecc--------------------cceEEEEecCCCCEEEEEeCCCeEEEeCCCccc
Q 004603 687 IILKGCFILNSIFNCYLLLHRIF--------------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 687 ~s~~g~~l~sgs~Dg~I~vh~~~--------------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~~~ 742 (743)
++|+|+|+++++.---|++|... ..++.+++..+...+++.+.||++++||.+..|
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 99999999999988778886432 123444555557899999999999999988766
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=1.2e-15 Score=167.84 Aligned_cols=222 Identities=14% Similarity=0.149 Sum_probs=159.1
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
..++|+.+..||.|.+++...... + .....+.....|...|.++.|-|....|++++.|.++++||+
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~f------r-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVF------R-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV 129 (720)
T ss_pred ccceEEEecCCCceeeecchhhhc------c-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence 357899999999999994432210 0 011123455689999999999996678999999999999999
Q ss_pred CCCeEEEE--EcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe------e--------------------EEE
Q 004603 585 ESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY------S--------------------LRT 635 (743)
Q Consensus 585 ~t~~~i~~--l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~------~--------------------l~~ 635 (743)
...+++.. +.||++.|.+++|+|. ...|++|+.||.|.|||++.... + ++.
T Consensus 130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 99888776 8999999999999995 66889999999999999874331 0 111
Q ss_pred EecCCCCeEE---EEEecCCCcEEEEEeC-CCcEEEEECCCCeeeEEEe---------------ccCceeeecCCCEEEE
Q 004603 636 FTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK---------------VCNLMPIILKGCFILN 696 (743)
Q Consensus 636 l~~h~~~V~s---l~fsp~g~~lL~Sgs~-Dg~IrvWDl~tg~~v~~~~---------------~~~~i~~s~~g~~l~s 696 (743)
.+.|...|.+ +.+..|.. .|++++. |+.|+||||++..+..... +...+.....|.||++
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred cccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 2234434444 44444544 6667776 9999999999765432211 1233455567899999
Q ss_pred EecCCeEEEEecccce--------------EE--EEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 697 SIFNCYLLLHRIFLNL--------------LS--VSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 697 gs~Dg~I~vh~~~v~~--------------l~--v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
.+.|+.|.+|+..... +. -....++.++++|++|+.+++|....
T Consensus 289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 9999999998764321 11 12234478999999999999997653
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.68 E-value=1e-15 Score=163.15 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=183.2
Q ss_pred ccccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEE
Q 004603 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL 550 (743)
Q Consensus 471 ~~~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (743)
..++.......+.++.|+|... ..+|++|..-|.|-+|+.... ......+..
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~-------------~~lva~GdK~G~VG~Wn~~~~---------------~~d~d~v~~ 229 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTEN-------------RKLVAVGDKGGQVGLWNFGTQ---------------EKDKDGVYL 229 (498)
T ss_pred ecceeEecccceEEEEecccCc-------------ceEEEEccCCCcEEEEecCCC---------------CCccCceEE
Confidence 3345555667888899999553 368999999999999977421 122244667
Q ss_pred eeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603 551 IPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 551 l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~ 627 (743)
+..|..+|.++.|+| +...|++.|.||+|++-|+++..... .+......++.+.|+.+...++.+..=|.+.+||.+
T Consensus 230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R 309 (498)
T KOG4328|consen 230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR 309 (498)
T ss_pred eccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEee
Confidence 889999999999999 56689999999999999998754332 332244567788888877777777777799999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee-----eEEEec---cCceeeecCCCEEEEEec
Q 004603 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----AGVFKV---CNLMPIILKGCFILNSIF 699 (743)
Q Consensus 628 ~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~-----v~~~~~---~~~i~~s~~g~~l~sgs~ 699 (743)
++......+.-|...|++|+++|..+++|++|+.|++++|||+|.-.. +..+.. ..+..|+|.+..|++.+.
T Consensus 310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred cCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence 988767777789999999999999999999999999999999986332 233322 244779999999999999
Q ss_pred CCeEEEEeccc---------------------ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 700 NCYLLLHRIFL---------------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 700 Dg~I~vh~~~v---------------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|+.|+||+... +.+...+..+..+|+.|-.-..|-|+|..
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 99999988741 11222223345688888888888888754
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.5e-14 Score=158.79 Aligned_cols=233 Identities=14% Similarity=0.203 Sum_probs=178.0
Q ss_pred CceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC-CCCeE
Q 004603 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVE 559 (743)
Q Consensus 481 ~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-~~~V~ 559 (743)
.++.+-|.|.+..+++.+... +.||.+-.|++|++|....+ +-....+.++ .+.|.
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS-----~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE 73 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKS-----NQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIE 73 (691)
T ss_pred EEEEEeeeccceEEEEEeccC-----CceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCcee
Confidence 455566777777666665543 66999999999999965443 1233344444 46799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE-EEEec
Q 004603 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTG 638 (743)
Q Consensus 560 siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l-~~l~~ 638 (743)
+++|++ +..|++.+.+|+|.-||+.+++.+..+....+.|++++.+|.+..++.|+.||.+..+++..+.... +.|..
T Consensus 74 ~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r 152 (691)
T KOG2048|consen 74 SLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR 152 (691)
T ss_pred eEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence 999995 5567788889999999999999999999999999999999999999999999988888887655322 23444
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec--------cCceeee---cCCCEEEEEecCCeEEEEe
Q 004603 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV--------CNLMPII---LKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~--------~~~i~~s---~~g~~l~sgs~Dg~I~vh~ 707 (743)
.++.|.+|+|+|++.. +++|+.||.|++||..++..++.... ...+.++ .....|++|..-|+|++|+
T Consensus 153 q~sRvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccE-EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence 5689999999999864 56999999999999999887763321 2233333 3556799999999999987
Q ss_pred ccc------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 708 IFL------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 708 ~~v------------~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
... .++++....++.+++++|.|++|..+..
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 643 3455555555789999999999988743
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.67 E-value=6.2e-14 Score=147.96 Aligned_cols=209 Identities=10% Similarity=0.040 Sum_probs=147.7
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 004603 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG-GHDKKAVLWCTES 586 (743)
Q Consensus 508 ~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSg-s~Dg~V~IWd~~t 586 (743)
++++++.|+.|++|+...+ .....+..+.. +..++|+|+++.++++ +.|+.|++||+++
T Consensus 45 l~~~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 45 LYVCASDSDTIQVIDLATG-------------------EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred EEEEECCCCeEEEEECCCC-------------------cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 4467778899999965432 12233333333 5678999999877654 5689999999998
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg-~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I 665 (743)
.+.+..+.. ...+.+++|+|++.++++++.++ .+++||.++... +..+. ....+.+++|+|++..+++++..++.|
T Consensus 105 ~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 105 RKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred CeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEE
Confidence 887777753 33468899999999999888765 577889887554 33332 233567899999998777777789999
Q ss_pred EEEECCCCeeeEEEecc-----------CceeeecCCCEEEEE-ecCCeEEEEeccc-----------ceEEEEecCCCC
Q 004603 666 RYWSINNGSCAGVFKVC-----------NLMPIILKGCFILNS-IFNCYLLLHRIFL-----------NLLSVSEWCNPD 722 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~-----------~~i~~s~~g~~l~sg-s~Dg~I~vh~~~v-----------~~l~v~~~~~~~ 722 (743)
++||+++++++..+..+ ..+.+++++.+++.+ +.++.+.+|+... ....+.+..++.
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 261 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEK 261 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCC
Confidence 99999999887766421 236688999986554 4566788776431 112233344466
Q ss_pred EEEEE-eCCCeEEEeCCC
Q 004603 723 EISTS-SWKDSCCSHREL 739 (743)
Q Consensus 723 ~laSg-s~DG~V~iWd~~ 739 (743)
+|+++ +.+|.|++||..
T Consensus 262 ~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 262 YLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred EEEEEcCCCCeEEEEECC
Confidence 77776 569999999865
No 135
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=8.9e-15 Score=149.85 Aligned_cols=244 Identities=16% Similarity=0.160 Sum_probs=167.4
Q ss_pred ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCC------------CCccc------
Q 004603 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP------------RDRVG------ 534 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~------------~~~~~------ 534 (743)
+....++..++++.|+.|| ..+++++.|+.|++|+..+-... ....+
T Consensus 80 ~~LKgH~~~vt~~~FsSdG---------------K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDG---------------KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC 144 (420)
T ss_pred hhhhccCCceeeeEEcCCC---------------ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence 3445677888899999988 47899999999999966543210 00000
Q ss_pred --cccccCCCceeeeEE--------------------EeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004603 535 --RSAEVGKGFTFTEFQ--------------------LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST 592 (743)
Q Consensus 535 --~~~~~~~~~~~~~~~--------------------~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~ 592 (743)
-+.....+.++-.++ .-+-|...|..+-....+.+|++++.|.+|.||+++ |+.+..
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~ 223 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS 223 (420)
T ss_pred ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence 000111111111111 112355566667777788999999999999999998 888888
Q ss_pred EcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CC----eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 593 l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~---~~----~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I 665 (743)
+......-+..+.+|+|++|++++..--|+||.+-- +. ..+..++||.+.|..++|+++.. -+++.+.||++
T Consensus 224 idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~w 302 (420)
T KOG2096|consen 224 IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKW 302 (420)
T ss_pred eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcE
Confidence 877777778889999999999999999999999632 11 12567889999999999999976 45599999999
Q ss_pred EEEECCC-------CeeeEEEec--------cCceeeecCCCEEEEEecCCeEEE---------------EecccceEEE
Q 004603 666 RYWSINN-------GSCAGVFKV--------CNLMPIILKGCFILNSIFNCYLLL---------------HRIFLNLLSV 715 (743)
Q Consensus 666 rvWDl~t-------g~~v~~~~~--------~~~i~~s~~g~~l~sgs~Dg~I~v---------------h~~~v~~l~v 715 (743)
||||++- .+.+++... +-.+.++|.|..|+..... .+.+ |...+..++|
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~ 381 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISY 381 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEe
Confidence 9999862 122222211 1236688888887765432 2332 6666677777
Q ss_pred EecCCCCEEEEEeCCCeEEEeC
Q 004603 716 SEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 716 ~~~~~~~~laSgs~DG~V~iWd 737 (743)
+++ +.++++|| |..|++..
T Consensus 382 ~~~--g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 382 SSD--GKYIATCG-DRYVRVIR 400 (420)
T ss_pred cCC--CcEEeeec-ceeeeeec
Confidence 665 67888887 55666654
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.9e-15 Score=156.93 Aligned_cols=183 Identities=21% Similarity=0.320 Sum_probs=149.6
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
.+.||+.|...+++.+|....+ ..+..+.+|--.|+|+.|+-||.+|+|||.||.|.+|++
T Consensus 92 ~G~~l~ag~i~g~lYlWelssG-------------------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 92 LGYFLLAGTISGNLYLWELSSG-------------------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred CceEEEeecccCcEEEEEeccc-------------------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 3478998889999999955444 445566789999999999999999999999999999976
Q ss_pred C---------CCeEEEEEcccCCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC
Q 004603 585 E---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (743)
Q Consensus 585 ~---------t~~~i~~l~~H~~~V~~vafsp~--~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~ 653 (743)
. +.++++.|..|+-.|+++...+. ..+|+|++.|.++|+||+..+.. +.++. ....+.+++.+|.+.
T Consensus 153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Llti~-fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LLTIT-FPSSIKAVALDPAER 230 (476)
T ss_pred EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-eEEEe-cCCcceeEEEccccc
Confidence 3 35788999999999999988764 56899999999999999998764 44444 456799999999876
Q ss_pred cEEEEEeCCCcEEEEECCCCe----------------eeEEEecc------CceeeecCCCEEEEEecCCeEEEEecc
Q 004603 654 DLLCSCDNNSEIRYWSINNGS----------------CAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 654 ~lL~Sgs~Dg~IrvWDl~tg~----------------~v~~~~~~------~~i~~s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
.++.|+.+|.|.+.++.... .+..+.+| ++++++-||..|++|+.||.|+||+..
T Consensus 231 -~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 231 -VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred -EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 55589999999998875422 23444454 347788999999999999999999875
No 137
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.8e-14 Score=140.03 Aligned_cols=212 Identities=18% Similarity=0.237 Sum_probs=157.1
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCC---CCC-------ccc---cccc-------
Q 004603 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---PRD-------RVG---RSAE------- 538 (743)
Q Consensus 479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~---~~~-------~~~---~~~~------- 538 (743)
..++-|..|+|++ .++++|+.|.+|++.-++.+.. +.+ .++ -..+
T Consensus 89 kgsiyc~~ws~~g---------------eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~ 153 (350)
T KOG0641|consen 89 KGSIYCTAWSPCG---------------ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA 153 (350)
T ss_pred CccEEEEEecCcc---------------CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce
Confidence 3466778888887 5889999999998875543321 000 000 0000
Q ss_pred ----c---------CCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc--c-----CC
Q 004603 539 ----V---------GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--H-----TQ 598 (743)
Q Consensus 539 ----~---------~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~--H-----~~ 598 (743)
. .+......+..+.+|++.|.++ ++-++-.|++|+.|++|++||++-..++.++.. | +.
T Consensus 154 il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gless 232 (350)
T KOG0641|consen 154 ILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS 232 (350)
T ss_pred EEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence 0 0011224467788999999877 334788999999999999999998888877642 2 35
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC---e-
Q 004603 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---S- 674 (743)
Q Consensus 599 ~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg---~- 674 (743)
.|.+|+..|.|++|++|-.|....+||++-++ .+..|..|+..|.++.|+|.- +++.+|+.|..|++-|+... +
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHEL 310 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcC
Confidence 79999999999999999999999999999765 499999999999999999975 56669999999999998732 1
Q ss_pred eeEEEeccC----ceeeecCCCEEEEEecCCeEEEEec
Q 004603 675 CAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 675 ~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~ 708 (743)
.+.+...|. .+.|+|..-.+++.+.|.++.+|..
T Consensus 311 ~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 311 PIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred ceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 122222221 2568888888999999999999864
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.63 E-value=1.5e-13 Score=144.98 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=147.4
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~L-aSgs~Dg~V~IWd~~ 585 (743)
+++++++.|+.+++|+...+ +.+..+..|.. +.+++|+|+++.+ ++++.|+.|++||+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 56788999999999955332 23445555543 7789999999876 567788999999999
Q ss_pred CCeEEEEEcccCCCEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC-C
Q 004603 586 SFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S 663 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp~~~~LaS-gs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D-g 663 (743)
+++.+..+..+.. +..++|+|+++.+++ ++.|+.|++||+++... +..+.. ...+.+++|+|++..++ +++.+ .
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~~-~~~~~~~~~~~dg~~l~-~~~~~~~ 137 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIPV-GVEPEGMAVSPDGKIVV-NTSETTN 137 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEeeC-CCCcceEEECCCCCEEE-EEecCCC
Confidence 9888877765544 567899999887755 45689999999987543 555542 34468899999988555 45544 4
Q ss_pred cEEEEECCCCeeeEEEec---cCceeeecCCCEEEEE-ecCCeEEEEecccce----E---------------EEEecCC
Q 004603 664 EIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNS-IFNCYLLLHRIFLNL----L---------------SVSEWCN 720 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sg-s~Dg~I~vh~~~v~~----l---------------~v~~~~~ 720 (743)
.+++||.++++.+..+.. ...+.+++++.+++.+ ..++.|.+|+..... + .+....+
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 678889998887665432 2346789999988655 468999998764321 1 1222333
Q ss_pred CCEE-EEEeCCCeEEEeCCC
Q 004603 721 PDEI-STSSWKDSCCSHREL 739 (743)
Q Consensus 721 ~~~l-aSgs~DG~V~iWd~~ 739 (743)
+..+ ++.+.++.|.+||..
T Consensus 218 g~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CCEEEEEcCCCCeEEEEECC
Confidence 4553 444567789999854
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.63 E-value=8.1e-15 Score=157.16 Aligned_cols=212 Identities=16% Similarity=0.197 Sum_probs=167.3
Q ss_pred CCCCceEEEEecCCCccccccCcc-----------ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceee
Q 004603 478 GASSKSLLMFGSDGMGSLTSAPNQ-----------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT 546 (743)
Q Consensus 478 ~s~~~s~~~fs~dg~~~l~~~~~~-----------l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~ 546 (743)
-+.++.+..|.-++.. -.++... ......++++|+..+.|++|+... ..
T Consensus 53 ~~gdk~~~~~~K~g~~-~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-------------------kl 112 (673)
T KOG4378|consen 53 MAGDKVMRIKEKDGKT-PEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-------------------KL 112 (673)
T ss_pred cCCceeEEEecccCCC-CccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-------------------HH
Confidence 4556777777777651 1111111 122347899999999999995432 23
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccC-CCEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 004603 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLS-RLATSSADRTVRVW 624 (743)
Q Consensus 547 ~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~-~~V~~vafsp~~~-~LaSgs~Dg~VrvW 624 (743)
..+.+++|.+.|+|+.++-...+||+++..|.|.|..+.++..-..|.... ..|..++|+|..+ +|.+++.+|.|.+|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 456678999999999999989999999999999999999887777776443 4466899999644 57889999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCC
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg 701 (743)
|+............|..+...|||+|..+.+|++.+.|+.|.+||++..+...++... +.++|.++|.+|+.|...|
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCc
Confidence 9986555455667899999999999999999999999999999999988777666643 5688999999999999999
Q ss_pred eEEEEecc
Q 004603 702 YLLLHRIF 709 (743)
Q Consensus 702 ~I~vh~~~ 709 (743)
.|..++..
T Consensus 273 ~~i~YD~R 280 (673)
T KOG4378|consen 273 ELIAYDMR 280 (673)
T ss_pred eEEEEecc
Confidence 98885543
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.3e-14 Score=148.52 Aligned_cols=177 Identities=19% Similarity=0.249 Sum_probs=143.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|+|++.|..|.+||+..+. ++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999987 477666
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec---------cCceeeecCCCEEEEEecCCeEEEEec
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---------CNLMPIILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~---------~~~i~~s~~g~~l~sgs~Dg~I~vh~~ 708 (743)
..++|+...|+|...+.++++-.+..-.+-++..++.. .+.. .....|.+.|.|+++|...|.+.+.+.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 57899999999988877777766666667776653211 1111 112347889999999999999988433
Q ss_pred c---------------cceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 709 F---------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 709 ~---------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
. ++.+.++.. +..++.-+.|..|+.|+-.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~--g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRK--GRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred chheeeeeeeechheeeeEEEEecc--CcEEEEecCCceEEEEehh
Confidence 2 233333333 7799999999999999755
No 141
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=4.3e-15 Score=162.12 Aligned_cols=221 Identities=16% Similarity=0.135 Sum_probs=143.0
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004603 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (743)
Q Consensus 502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~I 581 (743)
+......+++++.|+.+++|..... ........+++.+|++|.++|.|+++.+++..+++|+.||+|+.
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 4556789999999999999966321 12245567889999999999999999999999999999999999
Q ss_pred EECCC-------C---eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC
Q 004603 582 WCTES-------F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (743)
Q Consensus 582 Wd~~t-------~---~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~ 651 (743)
|++.. . ....++.||++.|+.+++++....|++|+.||+||+|+......|+.......+...+++|-..
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence 96531 1 2345678999999999999988899999999999999987644322222222233445555433
Q ss_pred CCcEEEEEeCCCcEEEEECCC---CeeeEEEec-----------cCceeeecCCCEEEEEecCCeEEE------------
Q 004603 652 KEDLLCSCDNNSEIRYWSINN---GSCAGVFKV-----------CNLMPIILKGCFILNSIFNCYLLL------------ 705 (743)
Q Consensus 652 g~~lL~Sgs~Dg~IrvWDl~t---g~~v~~~~~-----------~~~i~~s~~g~~l~sgs~Dg~I~v------------ 705 (743)
..-+.++ +..++++++.+ ...+..+.. ...+..++.+.+.+++..|+.|++
T Consensus 451 ~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 451 RPAHSLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred hhHhhhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 2111212 12233333322 222222211 122344456666666666666666
Q ss_pred --EecccceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 706 --HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 706 --h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
|...+..+++.+. +.+|.+++.|+.|++|+-
T Consensus 528 ~a~~~svtslai~~n--g~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPN--GPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred eeccceecceeecCC--CceEEeecCCceeehhhc
Confidence 2223334444333 557777777777777754
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4e-14 Score=145.02 Aligned_cols=222 Identities=14% Similarity=0.182 Sum_probs=160.5
Q ss_pred ceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEE
Q 004603 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (743)
Q Consensus 482 ~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si 561 (743)
..++.|++-| .+|+.|+.||.|.+|+.. ++..-+.+.+|..+|+|+
T Consensus 26 a~~~~Fs~~G---------------~~lAvGc~nG~vvI~D~~-------------------T~~iar~lsaH~~pi~sl 71 (405)
T KOG1273|consen 26 AECCQFSRWG---------------DYLAVGCANGRVVIYDFD-------------------TFRIARMLSAHVRPITSL 71 (405)
T ss_pred cceEEeccCc---------------ceeeeeccCCcEEEEEcc-------------------ccchhhhhhccccceeEE
Confidence 4556677655 699999999999999553 334556788999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEe--c
Q 004603 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT--G 638 (743)
Q Consensus 562 afspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~--~ 638 (743)
+||+||++|+|+|.|..|++||+..+.++..++ ...+|+.+.|+|. .+.++.+-.+..-.+-++..+...+.... +
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~ 150 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG 150 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcc
Confidence 999999999999999999999999999988886 4778999999994 34444444455556666654332111111 0
Q ss_pred -CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC-----ceeeecCCCEEEEEecCCeEEEEecc---
Q 004603 639 -HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-----LMPIILKGCFILNSIFNCYLLLHRIF--- 709 (743)
Q Consensus 639 -h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~-----~i~~s~~g~~l~sgs~Dg~I~vh~~~--- 709 (743)
......+..|++.|++ +++|...|.+.|+|..+-+|+..++..+ .+.++..|.+++.-+.|++|+..+..
T Consensus 151 dln~sas~~~fdr~g~y-IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 151 DLNSSASHGVFDRRGKY-IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred ccccccccccccCCCCE-EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 1111223468888875 5589999999999999999999888643 47788999999999999999996543
Q ss_pred -----------------cceEE---EEecCCCCEEEEEeCC-CeEEEeCCC
Q 004603 710 -----------------LNLLS---VSEWCNPDEISTSSWK-DSCCSHREL 739 (743)
Q Consensus 710 -----------------v~~l~---v~~~~~~~~laSgs~D-G~V~iWd~~ 739 (743)
++.+. .+++.++.+++.++.. ..++||-..
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 11111 2334446676666633 368889643
No 143
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.62 E-value=1.2e-14 Score=159.21 Aligned_cols=180 Identities=19% Similarity=0.268 Sum_probs=139.3
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 004603 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 556 ~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~-------~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl 626 (743)
..|++++|.| |...||+|++||.|+||.+..+ .+...+.+|...|++++||| -.+.|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3599999999 8889999999999999998642 35567889999999999999 4678999999999999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee-eEEEecc-----CceeeecCCCEEEEEecC
Q 004603 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKVC-----NLMPIILKGCFILNSIFN 700 (743)
Q Consensus 627 ~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~-v~~~~~~-----~~i~~s~~g~~l~sgs~D 700 (743)
++... ...+.+|.+.|.+++|+|+|. .+++.+.||+||||..++++. +..-++. ..+.|..+|.++++.+.|
T Consensus 708 ~~~~~-~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 708 ANAKL-YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhh-hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 98765 678899999999999999987 677999999999999987643 3322221 337788999999988877
Q ss_pred Ce----EEEEec--------ccceEEEEe-------cCC-CCEEEEEeCCCeEEEeC
Q 004603 701 CY----LLLHRI--------FLNLLSVSE-------WCN-PDEISTSSWKDSCCSHR 737 (743)
Q Consensus 701 g~----I~vh~~--------~v~~l~v~~-------~~~-~~~laSgs~DG~V~iWd 737 (743)
.. |.+++. ....+.+.+ +.+ +.++++|-.|..|..|.
T Consensus 786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 53 222211 111222221 122 46788898999998873
No 144
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.61 E-value=3.4e-14 Score=149.25 Aligned_cols=189 Identities=19% Similarity=0.247 Sum_probs=146.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
+..|++||.|.+|.+|..+++...++ ...++..+.+|...|--|+|+| -.+.|++++.|.+|.|||+
T Consensus 94 D~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 94 DCVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred CceeecCCCCceEEEEECCCcccccC------------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 37899999999999998877642221 2267889999999999999999 4568999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC-eEEEEEecCCCcEEEEEe---
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSCD--- 660 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~-V~sl~fsp~g~~lL~Sgs--- 660 (743)
.+++.+.++. |.+.|+++.|+.+|.+|+|.+.|+.|||||.+++.. +..-.+|.+. ...+.|-.++. ++.+|-
T Consensus 162 ~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~ 238 (472)
T KOG0303|consen 162 GTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASGK-IFTTGFSRM 238 (472)
T ss_pred cCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccCc-eeeeccccc
Confidence 9999888887 999999999999999999999999999999999775 6666777753 45567777776 665553
Q ss_pred CCCcEEEEECCCCe---eeEEEeccCce--e-eecCCCEEE-EEecCCeEEEEecc
Q 004603 661 NNSEIRYWSINNGS---CAGVFKVCNLM--P-IILKGCFIL-NSIFNCYLLLHRIF 709 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~---~v~~~~~~~~i--~-~s~~g~~l~-sgs~Dg~I~vh~~~ 709 (743)
.+..|-+||..+-+ ....+...+.+ + +.++...++ +|-.|+.|+.+...
T Consensus 239 seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 239 SERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 46789999876543 23344444442 2 446666655 56678888885443
No 145
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1e-13 Score=142.06 Aligned_cols=181 Identities=15% Similarity=0.184 Sum_probs=140.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
+.-+++|+.|+.|+.++...+ ....+-.|...|.||.+++....+++||+|++|++||.+
T Consensus 65 ~~~~~~G~~dg~vr~~Dln~~--------------------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 65 ESTIVTGGLDGQVRRYDLNTG--------------------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred CceEEEeccCceEEEEEecCC--------------------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence 457789999999999976554 223456799999999999988899999999999999999
Q ss_pred CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE-ecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l-~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
....+.++.. ...|.|+... ++.|+.|+.|..|.+||+++...+.... ..-.-.+.+|++.|++..++ +++-||.
T Consensus 125 ~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~-~sSieGR 200 (323)
T KOG1036|consen 125 NKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYV-VSSIEGR 200 (323)
T ss_pred cccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceE-EEeecce
Confidence 7555555543 4489998775 6789999999999999999876544221 12234588999999766555 7778999
Q ss_pred EEEEECCCC----eeeEEEecc-------------CceeeecCCCEEEEEecCCeEEEEeccc
Q 004603 665 IRYWSINNG----SCAGVFKVC-------------NLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 665 IrvWDl~tg----~~v~~~~~~-------------~~i~~s~~g~~l~sgs~Dg~I~vh~~~v 710 (743)
|.|=.++.. +....|++| +.+.|+|.-..+++|+.||.|.+|+...
T Consensus 201 VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 201 VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred EEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence 888666654 333455554 4588999999999999999999998643
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.3e-15 Score=174.17 Aligned_cols=233 Identities=16% Similarity=0.192 Sum_probs=171.7
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (743)
Q Consensus 480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (743)
.....+.|...+.+ . ..+|+.|..||+|.+|+...- ..+.....+.....|++.|.
T Consensus 65 ~rF~kL~W~~~g~~----------~-~GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~G~V~ 120 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSH----------S-HGLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHTGPVL 120 (1049)
T ss_pred ccceeeeecccCCC----------c-cceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccCCcee
Confidence 34445667765541 1 157899999999999955332 12334456777889999999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEE
Q 004603 560 SCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRT 635 (743)
Q Consensus 560 siafspd-g~~LaSgs~Dg~V~IWd~~t~~~i~~l~--~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~ 635 (743)
.+.|++. +++||+|+.||.|.|||+.+.+.-.++. ...+.|.|++|+.. .+.|++++.+|++.|||+|..+. +..
T Consensus 121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~ 199 (1049)
T KOG0307|consen 121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIK 199 (1049)
T ss_pred eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-ccc
Confidence 9999995 4599999999999999998754433331 24578999999884 66789999999999999998653 555
Q ss_pred EecCCC--CeEEEEEecCCCcEEEEEeCCC---cEEEEECCCC-eeeEEEeccCc----eeeec-CCCEEEEEecCCeEE
Q 004603 636 FTGHST--TVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-SCAGVFKVCNL----MPIIL-KGCFILNSIFNCYLL 704 (743)
Q Consensus 636 l~~h~~--~V~sl~fsp~g~~lL~Sgs~Dg---~IrvWDl~tg-~~v~~~~~~~~----i~~s~-~g~~l~sgs~Dg~I~ 704 (743)
+..|.. .+..|.|||++..-+++++.|. .|.+||+|.. ..++++.+|.. +.+++ |..++++++.|+.|.
T Consensus 200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII 279 (1049)
T ss_pred cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence 554443 4789999999877666776554 6999999864 46677766643 55555 448999999999999
Q ss_pred EEeccc------------ceEEEEecC-CCCEEEEEeCCCeEEEeC
Q 004603 705 LHRIFL------------NLLSVSEWC-NPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 705 vh~~~v------------~~l~v~~~~-~~~~laSgs~DG~V~iWd 737 (743)
+|+... -++.+.+.. ++..+++.+.||+|-|+.
T Consensus 280 ~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 280 CWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred EecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 987653 123333332 267999999999999984
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=7.6e-14 Score=142.75 Aligned_cols=187 Identities=16% Similarity=0.185 Sum_probs=137.6
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEEcccCCCEEEEEEc-CC-CCEEEEEeCCCeEEEEE
Q 004603 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFS-PS-LSRLATSSADRTVRVWD 625 (743)
Q Consensus 552 ~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t----~~~i~~l~~H~~~V~~vafs-p~-~~~LaSgs~Dg~VrvWD 625 (743)
.+|.+-|.|+.|.+.|+.+|+|+.|.+|+|||.+. ..+...++.|.+.|..|.|. |. |..+|+|+.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47899999999999999999999999999999643 45667789999999999994 44 89999999999999997
Q ss_pred CCCCC--------eeEEEEecCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEECCCCeeeEEEec-------------c-
Q 004603 626 TENPD--------YSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKV-------------C- 682 (743)
Q Consensus 626 l~~~~--------~~l~~l~~h~~~V~sl~fsp~g~-~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-------------~- 682 (743)
-.... ..+.++....+.|++|+|.|... ..+++++.||.||||+.-....+..... +
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 52111 12456777888999999999732 3688999999999998765433222211 1
Q ss_pred ---Cceeeec---CCCEEEEEecC-----CeEEE------------------EecccceEEEEecCC--CCEEEEEeCCC
Q 004603 683 ---NLMPIIL---KGCFILNSIFN-----CYLLL------------------HRIFLNLLSVSEWCN--PDEISTSSWKD 731 (743)
Q Consensus 683 ---~~i~~s~---~g~~l~sgs~D-----g~I~v------------------h~~~v~~l~v~~~~~--~~~laSgs~DG 731 (743)
.++.+.+ ...+|+.|+.+ +.+.| |...+..++|.+... -..||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 1122332 23457777766 23333 445567777776643 35799999999
Q ss_pred eEEEeCCC
Q 004603 732 SCCSHREL 739 (743)
Q Consensus 732 ~V~iWd~~ 739 (743)
|+||+-.
T Consensus 250 -v~I~~v~ 256 (361)
T KOG2445|consen 250 -VRIFKVK 256 (361)
T ss_pred -EEEEEEe
Confidence 9999754
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.59 E-value=1.8e-14 Score=154.48 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=145.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
-+|++......++++|+..+.|+|||++...+.+.+++|...|++|.++....+||+++..|.|.|..+.++.. ..+|.
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~ 160 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFT 160 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-cccee
Confidence 45555555568999999999999999998778888999999999999999999999999999999999988664 44555
Q ss_pred cC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe-cc----CceeeecC-CCEEEEEecCCeEEEEeccc
Q 004603 638 GH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-VC----NLMPIILK-GCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 638 ~h-~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~-~~----~~i~~s~~-g~~l~sgs~Dg~I~vh~~~v 710 (743)
.. ...|.-|.|+|..+++|.+++.+|.|.+||+.....+..+. .| ..++|+|. ...|++.+.|+.|.+++...
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 33 34567899999999999999999999999999777665543 23 44888875 55678889999999976543
Q ss_pred c-----------eEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 711 N-----------LLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 711 ~-----------~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
. ...+.+..++.+|+.|...|.|+.||-+.
T Consensus 241 ~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 241 QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 2 11223334478999999999999998653
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.59 E-value=1.4e-14 Score=149.17 Aligned_cols=191 Identities=14% Similarity=0.148 Sum_probs=145.0
Q ss_pred eeeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEE---cccCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603 545 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRT 620 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~siafspd-g~~LaSgs~Dg~V~IWd~~t~~~i~~l---~~H~~~V~~vafsp~~~~LaSgs~Dg~ 620 (743)
....+.+.+|...|+.|.|+|+ ..+|++||.|..||+|++.+..++..| ++|.+.|.++.|++++.+|++|+.|..
T Consensus 125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhs 204 (385)
T KOG1034|consen 125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHS 204 (385)
T ss_pred hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcce
Confidence 3567788999999999999995 479999999999999999999999887 579999999999999999999999999
Q ss_pred EEEEECCCCCe------------------------e---EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC-C
Q 004603 621 VRVWDTENPDY------------------------S---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-N 672 (743)
Q Consensus 621 VrvWDl~~~~~------------------------~---l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~-t 672 (743)
|++|++..+.. . ..+-.-|...|-|+.|-- + ++++-+-++.|..|-.. -
T Consensus 205 lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~pgkl 281 (385)
T KOG1034|consen 205 LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKPGKL 281 (385)
T ss_pred EEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h-heeecccCceEEEEecchh
Confidence 99999973211 0 012224667777777764 3 56687778899999872 1
Q ss_pred Ce-------------eeEEEeccC------ceeeecCCCEEEEEecCCeEEEEecccc----------------eEEEEe
Q 004603 673 GS-------------CAGVFKVCN------LMPIILKGCFILNSIFNCYLLLHRIFLN----------------LLSVSE 717 (743)
Q Consensus 673 g~-------------~v~~~~~~~------~i~~s~~g~~l~sgs~Dg~I~vh~~~v~----------------~l~v~~ 717 (743)
++ .+..+.... ...+.+-+.+|+.|...|.|.+|+.... .-..++
T Consensus 282 ~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf 361 (385)
T KOG1034|consen 282 EESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF 361 (385)
T ss_pred hhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee
Confidence 11 122222222 1456677889999999999999875431 122344
Q ss_pred cCCCCEEEEEeCCCeEEEeCC
Q 004603 718 WCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 718 ~~~~~~laSgs~DG~V~iWd~ 738 (743)
..++..|+....|++|.-||-
T Consensus 362 S~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 362 SRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cccCcEEEEEeCCCcEEEEEe
Confidence 445789999999999999984
No 150
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.59 E-value=4.1e-14 Score=159.97 Aligned_cols=190 Identities=22% Similarity=0.301 Sum_probs=156.9
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004603 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (743)
Q Consensus 502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~I 581 (743)
+...++|+..|...|.|.+|....+-. -..+..-..|.++|+.++...-++.+++++.||.+++
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~----------------r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIH----------------RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCee----------------ecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 445568888888888888886665520 0111122579999999999988999999999999999
Q ss_pred EECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 582 Wd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~ 661 (743)
||..+...+..+.- ...+.++..+.....++.+..|-.|+++|+.+.+. ++.|.||...|++++|+|||++++ +++.
T Consensus 520 w~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~~FS~DgrWli-sasm 596 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDMTFSPDGRWLI-SASM 596 (910)
T ss_pred EecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeeeEeCCCCcEEE-Eeec
Confidence 99998777777653 45578888888888999999999999999998665 899999999999999999998665 8888
Q ss_pred CCcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEecC-CeEEEEeccc
Q 004603 662 NSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFN-CYLLLHRIFL 710 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~D-g~I~vh~~~v 710 (743)
|++||+||+.++.++..+.. ...+.++|+|.||++...| .-|.+|....
T Consensus 597 D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 597 DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 99999999999999887764 3568899999999999988 6688886543
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.58 E-value=1.1e-12 Score=140.86 Aligned_cols=215 Identities=23% Similarity=0.329 Sum_probs=167.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC-CCeEEEEE-cCCCC-EEEEEeC-CCcEEE
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-DKKAVL 581 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~siaf-spdg~-~LaSgs~-Dg~V~I 581 (743)
...+..++.|+.+.+|...... ..+..+.++. ..+..+.+ ++++. .++..+. |+.+++
T Consensus 77 ~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 77 GELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred CcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3677888899999999654441 2344444433 36777777 78777 5555444 999999
Q ss_pred EECCC-CeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE
Q 004603 582 WCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 582 Wd~~t-~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg 659 (743)
||... ......+..|...|.+++|+|++..+++++. |+.+++|++.... .+..+.+|...|.+++|+|++..+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 99998 7888899999999999999999988888885 9999999999744 4788888999999999999987566666
Q ss_pred eCCCcEEEEECCCCeeeE-EEeccCce---eeecCCCEEEEEecCCeEEEEecccc-------------eEEEEecCCCC
Q 004603 660 DNNSEIRYWSINNGSCAG-VFKVCNLM---PIILKGCFILNSIFNCYLLLHRIFLN-------------LLSVSEWCNPD 722 (743)
Q Consensus 660 s~Dg~IrvWDl~tg~~v~-~~~~~~~i---~~s~~g~~l~sgs~Dg~I~vh~~~v~-------------~l~v~~~~~~~ 722 (743)
+.|+.|++||...+.++. .+.++... .+++++.++++++.|+.+++|+.... ...+...+...
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 999999999999888877 57776554 68899989999999999999865421 11222233356
Q ss_pred EEEEEeCCCeEEEeCCC
Q 004603 723 EISTSSWKDSCCSHREL 739 (743)
Q Consensus 723 ~laSgs~DG~V~iWd~~ 739 (743)
.+++++.|+.+++|+..
T Consensus 298 ~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 298 LLASGSSDGTVRLWDLE 314 (466)
T ss_pred EEEEeeCCCcEEEEEcC
Confidence 77889999999999654
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.6e-13 Score=152.56 Aligned_cols=204 Identities=13% Similarity=0.205 Sum_probs=159.7
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..|.+.+.++.|.-|+..+ .+....+....+.|++++.+|.+..++.||+||.+..++...
T Consensus 81 ~RLFS~g~sg~i~EwDl~~-------------------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p 141 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHT-------------------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP 141 (691)
T ss_pred CeEEeecCCceEEEEeccc-------------------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC
Confidence 3467777888888884433 356677778889999999999999999999999888888776
Q ss_pred CeEE--EEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-------Ee-cCCCCeEEEEEecCCCcEE
Q 004603 587 FTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------FT-GHSTTVMSLDFHPSKEDLL 656 (743)
Q Consensus 587 ~~~i--~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~-------l~-~h~~~V~sl~fsp~g~~lL 656 (743)
++.. +.|.-.+++|.+++|+|++..|++|+.||.|++||+.++.. +.. +. +....|++|.|-.++ .+
T Consensus 142 ~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI 218 (691)
T KOG2048|consen 142 DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TI 218 (691)
T ss_pred ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC--cE
Confidence 5543 34555678999999999999999999999999999988765 331 11 133458899988665 68
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEE------------------EecccceEE
Q 004603 657 CSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLL------------------HRIFLNLLS 714 (743)
Q Consensus 657 ~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~v------------------h~~~v~~l~ 714 (743)
++|+..|+|.+||...+..+..++.|.. ++..+++.++++++.|+.|.. |...+.+++
T Consensus 219 ~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a 298 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA 298 (691)
T ss_pred EEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence 8999999999999999999988887643 667788999999999998766 233334444
Q ss_pred EEecCCCCEEEEEeCCCeEEEe
Q 004603 715 VSEWCNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 715 v~~~~~~~~laSgs~DG~V~iW 736 (743)
+. +..+++||.|.++.+-
T Consensus 299 v~----~~~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 299 VI----ENALISGGRDFTLAIC 316 (691)
T ss_pred ee----cceEEecceeeEEEEc
Confidence 43 3489999999988775
No 153
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.58 E-value=1.9e-14 Score=159.55 Aligned_cols=188 Identities=16% Similarity=0.291 Sum_probs=150.7
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC---CCCEEEEEeCCCc
Q 004603 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKK 578 (743)
Q Consensus 502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp---dg~~LaSgs~Dg~ 578 (743)
+.+....|++|...|++++++. ........+++|...|.|+.|+. ..++||+|+.|+-
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~L-------------------q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRl 527 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDL-------------------QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRL 527 (1080)
T ss_pred ECCCcceecccCccCceEEEEe-------------------hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCce
Confidence 4444578999999999999933 33456677889999999999985 5679999999999
Q ss_pred EEEEECCC-CeEEEEEcccCCC-------------------------------------------------EEEEEEcCC
Q 004603 579 AVLWCTES-FTVKSTLEEHTQW-------------------------------------------------ITDVRFSPS 608 (743)
Q Consensus 579 V~IWd~~t-~~~i~~l~~H~~~-------------------------------------------------V~~vafsp~ 608 (743)
|.|||+.. ..++.++.+|... +++++..|.
T Consensus 528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence 99999853 3334444444444 455555566
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeEEEEec---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---
Q 004603 609 LSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--- 682 (743)
Q Consensus 609 ~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~---h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~--- 682 (743)
.+++++++.|..|||||+..++. ++.|++ |++...-|...|.|-+ +++.+.|+++.|+|.-+|+|+....+|
T Consensus 608 ~k~v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred cceEEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhhhhcCcchh
Confidence 67899999999999999999775 777774 6677888999999875 445556999999999999999999887
Q ss_pred -CceeeecCCCEEEEEecCCeEEEEeccc
Q 004603 683 -NLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 683 -~~i~~s~~g~~l~sgs~Dg~I~vh~~~v 710 (743)
+.+.|.+|-+.|++.+.||.|.||....
T Consensus 686 VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeeeecccchhheeecCCceEEEEECch
Confidence 4577999999999999999999998765
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.57 E-value=6.7e-14 Score=149.46 Aligned_cols=214 Identities=18% Similarity=0.124 Sum_probs=150.8
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..+.+.|+||+|++-+.... .+.++..+......+.++.|+.+...++.|..=|...+||.++
T Consensus 248 s~i~ssSyDGtiR~~D~~~~-----------------i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGN-----------------ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred hheeeeccCceeeeeeecch-----------------hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 56788899999999855433 2333333334445578899998888888888777999999998
Q ss_pred CeE-EEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC--e-eEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603 587 FTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--Y-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 587 ~~~-i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~--~-~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~ 661 (743)
.+. ...++-|...|++|+++|. ..+|+||+.|++++|||+|.-. . ++.....|...|.+..|+|.+..++ +-+.
T Consensus 311 ~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~-TT~~ 389 (498)
T KOG4328|consen 311 DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL-TTCQ 389 (498)
T ss_pred CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE-eecc
Confidence 654 6667789999999999995 5678999999999999998632 2 2334446999999999999988754 6667
Q ss_pred CCcEEEEECC----CCeeeEEEeccC---------ceeeecCCCEEEEEecCCeEEEEecccce-------------EEE
Q 004603 662 NSEIRYWSIN----NGSCAGVFKVCN---------LMPIILKGCFILNSIFNCYLLLHRIFLNL-------------LSV 715 (743)
Q Consensus 662 Dg~IrvWDl~----tg~~v~~~~~~~---------~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~-------------l~v 715 (743)
|.+|||||.. .......+.+.+ ...|.|+..+|++|..-..|-|.+....- -++
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~v 469 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSV 469 (498)
T ss_pred CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccc
Confidence 9999999983 333333443211 14588999999999887777664433322 111
Q ss_pred EecCC-CC-EEEEEeCCCeEEEeCC
Q 004603 716 SEWCN-PD-EISTSSWKDSCCSHRE 738 (743)
Q Consensus 716 ~~~~~-~~-~laSgs~DG~V~iWd~ 738 (743)
....+ .. +++.++.-|.|+||-.
T Consensus 470 n~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 470 NEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred eeecccccceeccCCccceEEEEec
Confidence 11111 23 5555667889998854
No 155
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=4.1e-13 Score=133.45 Aligned_cols=221 Identities=14% Similarity=0.106 Sum_probs=150.7
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004603 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (743)
Q Consensus 502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~I 581 (743)
+.+..++++.|+.+|.|.++....-..... +......+-...+|.++|+.++|+ ..+|++|+ ||.|+-
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYG 85 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEE
Confidence 344568999999999999985543221111 112223445568999999999997 45677776 699998
Q ss_pred EECCCCeE----EEEE----cccC-----CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 004603 582 WCTESFTV----KSTL----EEHT-----QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (743)
Q Consensus 582 Wd~~t~~~----i~~l----~~H~-----~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~f 648 (743)
|-.+.... .+.+ .-|. -.|.++-..|..+-+++++.|+.++.||+++++. .++++||++.|.++.-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeeeee
Confidence 87643211 1111 1122 3588999999877777778999999999999876 8899999999999988
Q ss_pred ecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----------c--eeeecCCCEEEEEecCCeEEEEecc-cceEEE
Q 004603 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----------L--MPIILKGCFILNSIFNCYLLLHRIF-LNLLSV 715 (743)
Q Consensus 649 sp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----------~--i~~s~~g~~l~sgs~Dg~I~vh~~~-v~~l~v 715 (743)
-.....+| +|++||++||||+++++++..+.... . .++..+..|+++|+.-. +.+|... .....+
T Consensus 165 R~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~-lslwhLrsse~t~v 242 (325)
T KOG0649|consen 165 RNANGQIL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK-LSLWHLRSSESTCV 242 (325)
T ss_pred cccCccee-ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc-eeEEeccCCCceEE
Confidence 44444455 99999999999999999998876421 1 45667788888887553 4444332 222222
Q ss_pred EecC--------CCCEEEEEeCCCeEEEeC
Q 004603 716 SEWC--------NPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 716 ~~~~--------~~~~laSgs~DG~V~iWd 737 (743)
-+.+ ....++++|.-..|..|.
T Consensus 243 fpipa~v~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 243 FPIPARVHLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred EecccceeEeeeecceEEEeccccceeeee
Confidence 1111 145677777666666664
No 156
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.57 E-value=4.1e-13 Score=144.67 Aligned_cols=201 Identities=19% Similarity=0.225 Sum_probs=154.0
Q ss_pred EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004603 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (743)
Q Consensus 509 l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~ 588 (743)
+++|..+|+|.+|.. ......+....|.+.|.+++.-.+|.+|- |+.|++|..||-. .+
T Consensus 260 viTgDS~G~i~Iw~~-------------------~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~ 318 (626)
T KOG2106|consen 260 VITGDSGGNILIWSK-------------------GTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YR 318 (626)
T ss_pred EEeecCCceEEEEeC-------------------CCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-cc
Confidence 688999999999933 11223334449999999999999998665 9999999999831 11
Q ss_pred E------------EEE-----------------------------EcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603 589 V------------KST-----------------------------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 589 ~------------i~~-----------------------------l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~ 627 (743)
. +++ ..+|....+.++.+|+...++|++.|+.|++|+ .
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~ 397 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D 397 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C
Confidence 1 111 136888899999999999999999999999999 2
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCCeEE
Q 004603 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 628 ~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~ 704 (743)
..++.+.. -..++.+++|+|.| .++.|...|...|.|.++...+...... +.+.++|+|.+|+.|+.|+.|.
T Consensus 398 --~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 398 --HKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred --CceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence 22233322 45678999999998 6778999999999999986666554442 3478999999999999999999
Q ss_pred EEec----------------ccceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 705 LHRI----------------FLNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 705 vh~~----------------~v~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
++.. .+..+.|+.+ ..++.+-+.|-.|..|+.
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~D--s~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSD--SQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCC--CceEEeccCceEEEEEcc
Confidence 8443 2344555554 789999999999999954
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.57 E-value=7.2e-14 Score=141.71 Aligned_cols=161 Identities=21% Similarity=0.379 Sum_probs=127.5
Q ss_pred CceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEE
Q 004603 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (743)
Q Consensus 481 ~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~s 560 (743)
...|+.|.|++. -+++.. |.+|.+|........ ...+. ...-.+|....++
T Consensus 125 ~i~cvew~Pns~---------------klasm~-dn~i~l~~l~ess~~---vaev~----------ss~s~e~~~~fts 175 (370)
T KOG1007|consen 125 KINCVEWEPNSD---------------KLASMD-DNNIVLWSLDESSKI---VAEVL----------SSESAEMRHSFTS 175 (370)
T ss_pred ceeeEEEcCCCC---------------eeEEec-cCceEEEEcccCcch---heeec----------ccccccccceecc
Confidence 678999999775 223332 889999976655321 00100 0111135666888
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603 561 CHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 561 iafsp--dg~~LaSgs~Dg~V~IWd~~t~~~i~~l-~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
-+|+| +|+.|++.+ |+++..||+++.++...+ ..|...|..+.|+|+ ..+|+||+.||.||+||.|..+.++.++
T Consensus 176 g~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred cccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence 99998 888888876 889999999997766655 468888999999997 4568999999999999999999999999
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
.+|...|++|.|+|....++.+|+.|..|.+|...
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred CCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 99999999999999988899999999999999754
No 158
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.57 E-value=2.5e-14 Score=158.94 Aligned_cols=193 Identities=18% Similarity=0.268 Sum_probs=150.6
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~D-----g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~ 620 (743)
.++..+.||...|+|++.+|+++++||++.. -.|+||+..+...+..+.+|.-.|+.++|+||+++|++.+.|.+
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence 4466778999999999999999999999864 35899999998888899999999999999999999999999999
Q ss_pred EEEEECCCCCee---EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC--eeeEEEe------ccCceeeec
Q 004603 621 VRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFK------VCNLMPIIL 689 (743)
Q Consensus 621 VrvWDl~~~~~~---l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg--~~v~~~~------~~~~i~~s~ 689 (743)
+.+|........ ....+.|+..|++.+|+|++. .|+|+|.|++|+||..... +++..+. ..+.+.+.+
T Consensus 596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred EEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence 999987543221 234678999999999999976 4889999999999998877 4443321 123333332
Q ss_pred -----CCCEEEEEecCCeEEEEecc--------------------------cceEEEEecC--------CCCEEEEEeCC
Q 004603 690 -----KGCFILNSIFNCYLLLHRIF--------------------------LNLLSVSEWC--------NPDEISTSSWK 730 (743)
Q Consensus 690 -----~g~~l~sgs~Dg~I~vh~~~--------------------------v~~l~v~~~~--------~~~~laSgs~D 730 (743)
.+..++.|-..|.|.+|+-. ++.+.|.+.+ ....+++|+.|
T Consensus 675 ~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D 754 (764)
T KOG1063|consen 675 VDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDD 754 (764)
T ss_pred cccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccc
Confidence 33467788888999886622 3456666442 23467999999
Q ss_pred CeEEEeCCC
Q 004603 731 DSCCSHREL 739 (743)
Q Consensus 731 G~V~iWd~~ 739 (743)
.++++++-.
T Consensus 755 ~~vri~nv~ 763 (764)
T KOG1063|consen 755 ESVRIFNVD 763 (764)
T ss_pred ceeEEeecc
Confidence 999998754
No 159
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=4.8e-15 Score=160.49 Aligned_cols=128 Identities=20% Similarity=0.400 Sum_probs=113.6
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCCCEEEEEEcC--CCCEEEEEeCCCeEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR 622 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l-~~H~~~V~~vafsp--~~~~LaSgs~Dg~Vr 622 (743)
....++.||++.|.|++|+.+|.+|++|++|-.+.|||.-..+++..+ .+|+..|.|+.|-| +...++||..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 445678899999999999999999999999999999999888877766 68999999999999 466889999999999
Q ss_pred EEECCC---------CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004603 623 VWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 623 vWDl~~---------~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg 673 (743)
+||+.. .......+..|...|..|+-.|++++.|-++++||+||-+|++..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 999975 233456677899999999999999999999999999999999964
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.56 E-value=2.3e-14 Score=157.09 Aligned_cols=192 Identities=15% Similarity=0.164 Sum_probs=144.9
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~ 585 (743)
..|+.++.|+.|++|....+. ......++...+..|..+|+++.|+| -...|++++.|-+|+|||+.
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~g------------l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANG------------LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred HHeeecccCceEEEEEeccCC------------CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 567889999999999665542 12334566788999999999999999 66789999999999999999
Q ss_pred CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCcEEEEEe---C
Q 004603 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD---N 661 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~-~~V~sl~fsp~g~~lL~Sgs---~ 661 (743)
+++....|.+|++.|..++|+|+|++++|.+.||+|+||..+....++..-.+.. ..-..|.|.-+|++++|+|- .
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 9999999999999999999999999999999999999999998776665544322 23456889889987777664 2
Q ss_pred CCcEEEEECCCCe--eeEEEe--ccCc--e-eeecCCC-EEEEEecCCeEEEEeccc
Q 004603 662 NSEIRYWSINNGS--CAGVFK--VCNL--M-PIILKGC-FILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 662 Dg~IrvWDl~tg~--~v~~~~--~~~~--i-~~s~~g~-~l~sgs~Dg~I~vh~~~v 710 (743)
...|.+||..+-. .+.+.. .... + .+.+|.. .+++|-.|.+|.++...-
T Consensus 789 eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 789 ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 3468888876532 222222 1111 1 1344444 566777888888765543
No 161
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.56 E-value=1.7e-13 Score=155.07 Aligned_cols=226 Identities=12% Similarity=0.120 Sum_probs=177.7
Q ss_pred cccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004603 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (743)
Q Consensus 501 ~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~ 580 (743)
+..+.++.+++.-.+...+.|.......++-.... ..++.-...+++|+.++.|++.+.|...|+|-
T Consensus 407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~-------------~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDP-------------KRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred hhhhhcceeEEecCcceEEEEeccCcccccEEecC-------------ccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 33445677777777778888866554322211111 11112345689999999999999999999999
Q ss_pred EEECCCCeEEEEE---cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEE
Q 004603 581 LWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 581 IWd~~t~~~i~~l---~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~ 657 (743)
+|++.+|-....| ..|..+|+.++.+.-++.+++++.+|.+++||..+.. .+..+. -...+.++..+.... +++
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~-l~a 550 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSD-LLA 550 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhh-hhh
Confidence 9999999888888 4899999999998888899999999999999998744 344444 345677888887754 677
Q ss_pred EEeCCCcEEEEECCCCeeeEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEEecCCCC
Q 004603 658 SCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPD 722 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v-----------~~l~v~~~~~~~ 722 (743)
.+..|-.|+|+|+.+.+.++.|.+| +.++|++||+||++++.|++|++||... .+..++..+++.
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD 630 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGD 630 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCC
Confidence 7778999999999999999999987 4589999999999999999999999764 344555566688
Q ss_pred EEEEEeCC-CeEEEeCCCccc
Q 004603 723 EISTSSWK-DSCCSHRELYLY 742 (743)
Q Consensus 723 ~laSgs~D-G~V~iWd~~~~~ 742 (743)
++|+.-.| .-|++|-...+|
T Consensus 631 ~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 631 FLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred EEEEEEecCceEEEEEchhHh
Confidence 99999999 579999876655
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.55 E-value=8.3e-14 Score=146.98 Aligned_cols=158 Identities=23% Similarity=0.380 Sum_probs=132.1
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~- 585 (743)
+++++|+.|..|++|....+.... ..........+..|...|++|.|+|+|.+||+|+++|.|.+|-..
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~ 96 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD 96 (434)
T ss_pred cceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence 389999999999999766554222 124567788899999999999999999999999999999999654
Q ss_pred -------C--------CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEec
Q 004603 586 -------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650 (743)
Q Consensus 586 -------t--------~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp 650 (743)
+ .....++.+|...|+.++|+|++.++++++-|..+++||+..+.. +..+.+|...|..++|.|
T Consensus 97 ~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 97 VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDP 175 (434)
T ss_pred cCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecch
Confidence 2 234567789999999999999999999999999999999999775 788899999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeee
Q 004603 651 SKEDLLCSCDNNSEIRYWSINNGSCA 676 (743)
Q Consensus 651 ~g~~lL~Sgs~Dg~IrvWDl~tg~~v 676 (743)
.+. ++++-+.|...+++++.....+
T Consensus 176 l~q-yv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 176 LNQ-YVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred hhh-hhhhhccCcccceeeeeeeeee
Confidence 876 5557777887888877655433
No 163
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=7.7e-14 Score=144.51 Aligned_cols=148 Identities=16% Similarity=0.220 Sum_probs=118.6
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp--dg~~LaSgs~Dg~V~IWd 583 (743)
...++++-..+.|++|+... ...+..+++|...+..++|.. ....+.+|+.||+|++||
T Consensus 40 e~~vav~lSngsv~lyd~~t-------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGT-------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWD 100 (376)
T ss_pred ceeEEEEecCCeEEEEeccc-------------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence 36678888889999994432 345677888888899999977 467899999999999999
Q ss_pred CCCCeEE--EEEcccC-CCEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCCeeEE-EEecCCCCeEEEEEecCCCcE
Q 004603 584 TESFTVK--STLEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDL 655 (743)
Q Consensus 584 ~~t~~~i--~~l~~H~-~~V~~vafsp~~~~LaSgs~----Dg~VrvWDl~~~~~~l~-~l~~h~~~V~sl~fsp~g~~l 655 (743)
+++.... ..+..|. .+..|++.+..+..+++|.. |-.|.+||+|.....+. .+..|...|++|+|||..+.+
T Consensus 101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 101 IRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred eecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence 9875443 3445665 56677777767778888754 77899999998765444 445799999999999999999
Q ss_pred EEEEeCCCcEEEEECCC
Q 004603 656 LCSCDNNSEIRYWSINN 672 (743)
Q Consensus 656 L~Sgs~Dg~IrvWDl~t 672 (743)
|+|||.||.|.|||+..
T Consensus 181 LlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKK 197 (376)
T ss_pred EEeecccceEEeeecCC
Confidence 99999999999999863
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.5e-14 Score=168.79 Aligned_cols=220 Identities=18% Similarity=0.318 Sum_probs=164.8
Q ss_pred ccccCCCCCceEEEEecCCC---cc---------ccccCcc--ccCC-CCEEEEeeCCCcEEEEecCCCCCCCCcccccc
Q 004603 473 TLQHNGASSKSLLMFGSDGM---GS---------LTSAPNQ--LTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVGRSA 537 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~dg~---~~---------l~~~~~~--l~~~-~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~ 537 (743)
.+...|..+..+..|+++.. .. +..+... |... ++++++|+.|+.|.+|+.......
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-------- 152 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-------- 152 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC--------
Confidence 35556667777777777653 00 0011111 1122 469999999999999977664211
Q ss_pred ccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCC--CEEEEEEcCC-CCEEE
Q 004603 538 EVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPS-LSRLA 613 (743)
Q Consensus 538 ~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~--~V~~vafsp~-~~~La 613 (743)
++.. -..-.+.|.|++|+. ....|++++.+|++.|||++..+.+-.+..|.. .+..|+|||+ ...|+
T Consensus 153 -----~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 153 -----FTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred -----CCCC----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 1111 112345699999987 556899999999999999998888877776654 4778999997 55677
Q ss_pred EEeCCC---eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----Ccee
Q 004603 614 TSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMP 686 (743)
Q Consensus 614 Sgs~Dg---~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~ 686 (743)
+++.|. .|.+||+|....+++++.+|...|.++.|++.+.++|+||+.|+.|.+|+.++++.+..+... ..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 776643 699999999888899999999999999999999889999999999999999999999988863 2355
Q ss_pred eecCCC-EEEEEecCCeEEEEecc
Q 004603 687 IILKGC-FILNSIFNCYLLLHRIF 709 (743)
Q Consensus 687 ~s~~g~-~l~sgs~Dg~I~vh~~~ 709 (743)
|.|..- .+++.+.||.|.|....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeee
Confidence 665444 67888999999995443
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.54 E-value=7.5e-13 Score=136.20 Aligned_cols=234 Identities=14% Similarity=0.141 Sum_probs=171.9
Q ss_pred EEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEc
Q 004603 485 LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564 (743)
Q Consensus 485 ~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafs 564 (743)
..|+|||. -+.+-+.|+.+.+|..+.+....+.-..+. ......++... ...|+..+|-
T Consensus 55 ckWSPDGS---------------ciL~~sedn~l~~~nlP~dlys~~~~~~~~----~~~~~~~r~~e--g~tvydy~wY 113 (406)
T KOG2919|consen 55 CKWSPDGS---------------CILSLSEDNCLNCWNLPFDLYSKKADGPLN----FSKHLSYRYQE--GETVYDYCWY 113 (406)
T ss_pred ceeCCCCc---------------eEEeecccCeeeEEecChhhcccCCCCccc----cccceeEEecc--CCEEEEEEee
Confidence 57999884 677888999999997776543322211110 00011122222 3458888885
Q ss_pred -------CCCCEEEEEeCCCcEEEEECCCCeEEEEEcc--cCC---CEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCCe
Q 004603 565 -------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ---WITDVRFSPSLSRLATSSADRTVRVWDT-ENPDY 631 (743)
Q Consensus 565 -------pdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~--H~~---~V~~vafsp~~~~LaSgs~Dg~VrvWDl-~~~~~ 631 (743)
|+..++++.+.|.-|++||.-+++....+.+ |-+ ...+++|+|||.+|+.| ...+||+||+ |.+..
T Consensus 114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD 192 (406)
T ss_pred eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence 5778999999999999999999998877754 322 34689999999999876 5889999999 44443
Q ss_pred e-EEEEe-----cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----CceeeecCCCEEEEEec-C
Q 004603 632 S-LRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIF-N 700 (743)
Q Consensus 632 ~-l~~l~-----~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~-D 700 (743)
| +.+.. +..+.|.+++|+|....+++.++....+-||.-....++..+.+| +.+.+.++|+.|++|.. |
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD 272 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCC
Confidence 2 22222 236788999999998889999999999989888888888877765 55889999999999865 6
Q ss_pred CeEEEEeccc----------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 701 CYLLLHRIFL----------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 701 g~I~vh~~~v----------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
..|..|++.- -.+-+...+.+..|++|+.||.|++||..-
T Consensus 273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 6788888642 235556666688999999999999998753
No 166
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.53 E-value=4.1e-15 Score=149.47 Aligned_cols=77 Identities=32% Similarity=0.735 Sum_probs=65.2
Q ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHHHhhhhhccc----ccccccchhhH
Q 004603 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN----EKHSESAASYI 79 (743)
Q Consensus 4 ~~~~~~~~l~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~~fL~eWw~~fwd~f~A~~~----~~~s~~a~qYi 79 (743)
++-.||++|..||||||++-+..++|+.|+.|..+..+ +.+-.+.+||.+|||+|||+|+|... ..|+..++.+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 56789999999999999999999999999999887765 55667789999999999999999443 46666777665
Q ss_pred HH
Q 004603 80 ES 81 (743)
Q Consensus 80 q~ 81 (743)
++
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 54
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.2e-13 Score=151.26 Aligned_cols=190 Identities=17% Similarity=0.204 Sum_probs=136.1
Q ss_pred CceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC--EEEEEeCCC
Q 004603 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR 619 (743)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~--~LaSgs~Dg 619 (743)
.+...+...+++|++.|.||...|.|.+|++|+.||+|+||-+.++.|++++.- .+.|.||+|+|.+. .||++-.+.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence 455566777899999999999999999999999999999999999999988753 45688888888543 333332222
Q ss_pred eEEEEEC-------------------------------------------------------------------------
Q 004603 620 TVRVWDT------------------------------------------------------------------------- 626 (743)
Q Consensus 620 ~VrvWDl------------------------------------------------------------------------- 626 (743)
+.|-+.
T Consensus 466 -~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 466 -VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred -eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 322221
Q ss_pred ---------CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec----cCceeeecCCCE
Q 004603 627 ---------ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCF 693 (743)
Q Consensus 627 ---------~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~ 693 (743)
..... ...|....+.|.++.|||...++|++. -..|||||+...+.++.+.. ...+++++.|.-
T Consensus 545 ~~~VliHQLSK~~s-Q~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKS-QSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred cceEEEEecccccc-cCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence 11000 111222345688999999988777543 45799999988766554432 356889999999
Q ss_pred EEEEecCCeEEEEeccc---------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 694 ILNSIFNCYLLLHRIFL---------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 694 l~sgs~Dg~I~vh~~~v---------------~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
|+.|+.|+.+.+++... +.+++... -.++++|+.||+|.|+-.
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r--yPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR--YPLFASGSDDGTVIVFHG 679 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc--cceeeeecCCCcEEEEee
Confidence 99999999999966543 33444333 458999999999999843
No 168
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.52 E-value=2.9e-13 Score=150.63 Aligned_cols=249 Identities=14% Similarity=0.162 Sum_probs=176.9
Q ss_pred cccCCCCCceEEEEecCCCccc----------c-----ccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccc
Q 004603 474 LQHNGASSKSLLMFGSDGMGSL----------T-----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~dg~~~l----------~-----~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~ 538 (743)
...+++.++++++|.|+....+ + +-.....+..+++.+-+.-|..++| .
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW----------------k 344 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW----------------K 344 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE----------------e
Confidence 3455677888888888765221 1 1111122233444444455555555 3
Q ss_pred cCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEEcccCCCEEEEEEcCCCCEEEE
Q 004603 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLAT 614 (743)
Q Consensus 539 ~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t----~~~i~~l~~H~~~V~~vafsp~~~~LaS 614 (743)
..+...+.....+.||.+.|.+|+|+|.|.+|++.|.|-+-|||-.-. .-.+..-..|...++|++|-+....|++
T Consensus 345 t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 345 TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeee
Confidence 233445566677889999999999999999999999999999986431 1223333458888999999887678999
Q ss_pred EeCCCeEEEEECCC-------------------------------------------CCe--------------------
Q 004603 615 SSADRTVRVWDTEN-------------------------------------------PDY-------------------- 631 (743)
Q Consensus 615 gs~Dg~VrvWDl~~-------------------------------------------~~~-------------------- 631 (743)
|...+.+|+|+.-. +..
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 99999999999620 000
Q ss_pred ------------eEEEEecCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEECCCCeeeEEEecc----CceeeecC
Q 004603 632 ------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKVC----NLMPIILK 690 (743)
Q Consensus 632 ------------~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D-----g~IrvWDl~tg~~v~~~~~~----~~i~~s~~ 690 (743)
.++.+.||.-.|++++.+|++. +++|++.. ..|++|+..+...+..+.+| +.+.|+||
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd 583 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD 583 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC
Confidence 0233448989999999999976 78787654 36999999988877778776 45889999
Q ss_pred CCEEEEEecCCeEEEEeccc--------------ceEEE--EecCCCCEEEEEeCCCeEEEeCCC
Q 004603 691 GCFILNSIFNCYLLLHRIFL--------------NLLSV--SEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 691 g~~l~sgs~Dg~I~vh~~~v--------------~~l~v--~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|+||++.+.|+++.+|.... +.+.| ++.++..+++|+|.|.+|++|...
T Consensus 584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 99999999999999975421 22333 223346679999999999999654
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.49 E-value=9.9e-12 Score=133.41 Aligned_cols=193 Identities=26% Similarity=0.334 Sum_probs=147.6
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC-EEEEEeCCCeEE
Q 004603 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR 622 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~siafspdg~~LaSgs~-Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~-~LaSgs~Dg~Vr 622 (743)
......+..|...|.+++|+|++..+++++. |+.+++|++..++.+..+.+|...|.+++|+|++. .+++++.|+.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 3567778899999999999999998988886 99999999999889999999999999999999887 556668999999
Q ss_pred EEECCCCCeeEE-EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee-eEEEecc----CceeeecCCCEEEE
Q 004603 623 VWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKVC----NLMPIILKGCFILN 696 (743)
Q Consensus 623 vWDl~~~~~~l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~-v~~~~~~----~~i~~s~~g~~l~s 696 (743)
+||...+.. +. .+.+|...+ ...|+|++ .++++++.|+.+++||++.... +..+..| ..+.+.|++..+++
T Consensus 225 ~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 225 LWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred EEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 999886554 55 688888875 44899998 4666999999999999997664 4444333 23567788888888
Q ss_pred EecCCeEEEEecccce--------------EEEEecCCCCEEEEE-eCCCeEEEeCCCc
Q 004603 697 SIFNCYLLLHRIFLNL--------------LSVSEWCNPDEISTS-SWKDSCCSHRELY 740 (743)
Q Consensus 697 gs~Dg~I~vh~~~v~~--------------l~v~~~~~~~~laSg-s~DG~V~iWd~~~ 740 (743)
++.|+.+.+|+..... ..+....+...++.+ ..|+.+.+|+...
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence 9999888887543221 111111111344455 6888888887654
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.49 E-value=1.7e-12 Score=132.04 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=138.2
Q ss_pred eCCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCe----EEEEE-----cccCCCEEEEEEcC-CCCEEEEEe
Q 004603 552 PASTSKVESCHFSPDG-----KLLATGGHDKKAVLWCTESFT----VKSTL-----EEHTQWITDVRFSP-SLSRLATSS 616 (743)
Q Consensus 552 ~~H~~~V~siafspdg-----~~LaSgs~Dg~V~IWd~~t~~----~i~~l-----~~H~~~V~~vafsp-~~~~LaSgs 616 (743)
-.|..+++.+-|.|+. .+|||++ ..+|||.+...+ +...+ ..+.+++++..|+. +.++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 3688899999999975 3677665 369999886321 11111 34678899999987 678999999
Q ss_pred CCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE-eccC-c-----eee
Q 004603 617 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KVCN-L-----MPI 687 (743)
Q Consensus 617 ~Dg~VrvWDl~~~~--~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~-~~~~-~-----i~~ 687 (743)
-|-+..|||+.++. .....+..|...|..|+|...+..+|++++.||.||+||+|..+.-..+ .... . +++
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999852 2345678899999999999998999999999999999999976543332 2221 1 122
Q ss_pred e-cCCCEEEEEecCCe-EEE---------------EecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 688 I-LKGCFILNSIFNCY-LLL---------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 688 s-~~g~~l~sgs~Dg~-I~v---------------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
. .+.+|+++...|.. |.+ |...++.++|.+.. ...|+|||.|..+.+||-.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS-~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS-SSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC-CceeeecCCcceEEEEecc
Confidence 2 35556666544432 222 77888899998876 7899999999999999864
No 171
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.49 E-value=1.3e-14 Score=163.43 Aligned_cols=120 Identities=23% Similarity=0.467 Sum_probs=111.4
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD 625 (743)
+.++.+.+|...|+|+.|...|++|++|++|..|+||.+++..++..+.||.+.|+.++.+.+..++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 45667789999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
+.++. ++..+.+|++.|++|+|+|- .+.+.||++++||.+
T Consensus 261 l~~~~-pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 261 LPDGA-PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR 300 (1113)
T ss_pred cCCCc-hHHHHhccccceeeeccCcc-----ccCCCCCceEecccc
Confidence 99855 58999999999999999996 377889999999987
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.49 E-value=8.2e-13 Score=135.92 Aligned_cols=185 Identities=17% Similarity=0.184 Sum_probs=137.4
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe
Q 004603 554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY 631 (743)
Q Consensus 554 H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~ 631 (743)
..+.|.|++|+| +.+.++.|+.-..+-||.-....++..+.+|.+.|+.++|+++|+.|++|.. |..|.+||+|..+.
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 367899999999 6679999999999999998889999999999999999999999999999986 88999999999888
Q ss_pred eEEEEecCCC-CeEEEEE--ecCCCcEEEEEeCCCcEEEEECCC-CeeeEEEecc----CceeeecCCCEEEEEecCCeE
Q 004603 632 SLRTFTGHST-TVMSLDF--HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKVC----NLMPIILKGCFILNSIFNCYL 703 (743)
Q Consensus 632 ~l~~l~~h~~-~V~sl~f--sp~g~~lL~Sgs~Dg~IrvWDl~t-g~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I 703 (743)
++..+..|.. .-..|-| .|++. +|++|+.||.|++||+.. +..+..+..+ +.+.++|.-..+++++.....
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f 364 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIF 364 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceee
Confidence 8888888876 3344444 56665 888999999999999998 5555555433 456777776666666655444
Q ss_pred EEEecccceEE----EEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 704 LLHRIFLNLLS----VSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 704 ~vh~~~v~~l~----v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
..-+.....+. .........+.++.....+..||+.
T Consensus 365 ~~~~dD~ge~~~el~~~ad~n~~qlw~~y~~a~~~w~d~~ 404 (406)
T KOG2919|consen 365 KYPKDDNGELETELEEEADENEKQLWTGYVSALQVWMDGQ 404 (406)
T ss_pred cCCCcccccccccccchhhhhhhheeeeecccceeeecCC
Confidence 44222111111 1111113456777777777777764
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.48 E-value=4e-12 Score=140.37 Aligned_cols=223 Identities=16% Similarity=0.225 Sum_probs=156.8
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+.+.+..+.|.|||. .++.. .++.+.+|+..++ ....++++|.+.
T Consensus 11 ~~hci~d~afkPDGs--------------qL~lA--Ag~rlliyD~ndG-------------------~llqtLKgHKDt 55 (1081)
T KOG1538|consen 11 AEHCINDIAFKPDGT--------------QLILA--AGSRLLVYDTSDG-------------------TLLQPLKGHKDT 55 (1081)
T ss_pred cccchheeEECCCCc--------------eEEEe--cCCEEEEEeCCCc-------------------ccccccccccce
Confidence 334566788999886 33333 3456888866555 567889999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------EEEEE---------------------------cc--cCCCE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--------VKSTL---------------------------EE--HTQWI 600 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~--------~i~~l---------------------------~~--H~~~V 600 (743)
|+|++|+.||++||+|+.|+.|.||+-.-.. .+..+ .. ....|
T Consensus 56 VycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~ 135 (1081)
T KOG1538|consen 56 VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRI 135 (1081)
T ss_pred EEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeE
Confidence 9999999999999999999999999754211 11110 01 23467
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE--EEEecCCCCeEEEEEecCC----CcEEEEEeCCCcEEEEECCCCe
Q 004603 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSK----EDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 601 ~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l--~~l~~h~~~V~sl~fsp~g----~~lL~Sgs~Dg~IrvWDl~tg~ 674 (743)
.+++|..||.+|+-|-.||+|.+-+-. ++..+ ..-.|..++|++++|+|.. ..+++......++.+|.+. |+
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~ 213 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GK 213 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ce
Confidence 888899999999999999999987643 22222 2333577899999999963 2477778888888888876 44
Q ss_pred eeEEEec----cCceeeecCCCEEEEEecCCeEEEEecccc-----------eEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 675 CAGVFKV----CNLMPIILKGCFILNSIFNCYLLLHRIFLN-----------LLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 675 ~v~~~~~----~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~-----------~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
.+..-+. ..++.+.++|.|++.|+.|+.+.+.+-... ...+...+++.+++.|.-||+|--|+
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred eecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 4432221 234677899999999999999888432211 11222234477999999999997664
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=5.7e-12 Score=125.39 Aligned_cols=222 Identities=15% Similarity=0.153 Sum_probs=143.6
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
+++++.+|+ ||.|+-|...+.... ....++|+........ ...--.|+++...|..+.|+.++.|+.++-||+
T Consensus 71 ~d~~Lls~g-dG~V~gw~W~E~~es-~~~K~lwe~~~P~~~~-----~~evPeINam~ldP~enSi~~AgGD~~~y~~dl 143 (325)
T KOG0649|consen 71 HDDFLLSGG-DGLVYGWEWNEEEES-LATKRLWEVKIPMQVD-----AVEVPEINAMWLDPSENSILFAGGDGVIYQVDL 143 (325)
T ss_pred ehhheeecc-CceEEEeeehhhhhh-ccchhhhhhcCccccC-----cccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence 356777776 499999977665422 3334455443332111 011234889999997777777778999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec---------C-CCCeEEEEEecCCCc
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---------H-STTVMSLDFHPSKED 654 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~---------h-~~~V~sl~fsp~g~~ 654 (743)
++++..++++||++.|.++.-......++||+.||+||+||.++.++ +.++.. | ...|.+++.+.+ +
T Consensus 144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~ed--W 220 (325)
T KOG0649|consen 144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNED--W 220 (325)
T ss_pred cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccCc--e
Confidence 99999999999999999999866667899999999999999999765 555432 2 235677776544 3
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEeccCcee-eecCCCEEEEEecCCeEEEEecccc-----------eEEEEecCC-C
Q 004603 655 LLCSCDNNSEIRYWSINNGSCAGVFKVCNLMP-IILKGCFILNSIFNCYLLLHRIFLN-----------LLSVSEWCN-P 721 (743)
Q Consensus 655 lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~-~s~~g~~l~sgs~Dg~I~vh~~~v~-----------~l~v~~~~~-~ 721 (743)
++ +|+ ...+.+|.++..++..+|.....+. +.-+...+++++..+.|.-|..... ++..+.... -
T Consensus 221 lv-CGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 221 LV-CGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPI 298 (325)
T ss_pred EE-ecC-CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCce
Confidence 44 443 5679999999998888877542211 2223344455554333333322211 111111111 2
Q ss_pred CEEEEEeCCCeEEEeCC
Q 004603 722 DEISTSSWKDSCCSHRE 738 (743)
Q Consensus 722 ~~laSgs~DG~V~iWd~ 738 (743)
..|..++...++.|+++
T Consensus 299 k~~s~ag~s~~~~i~~~ 315 (325)
T KOG0649|consen 299 KFISIAGFSNKLHILKD 315 (325)
T ss_pred EEEEecccceeeeeeec
Confidence 35666677777777754
No 175
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.4e-12 Score=143.18 Aligned_cols=187 Identities=12% Similarity=0.182 Sum_probs=146.1
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603 548 FQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 548 ~~~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW 624 (743)
++..-.|...|..+.||..|.+|++...| ..|.|+.+...+...-|.--.+.|.++.|||...+|++++ -..||||
T Consensus 514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIY 592 (733)
T ss_pred eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEE
Confidence 34555688899999999999999998654 5688999887666666655677899999999988888876 6789999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEecc----CceeeecCCCEEEEEec
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVC----NLMPIILKGCFILNSIF 699 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~----~~i~~s~~g~~l~sgs~ 699 (743)
|+.... .+..+......|.+++.||.|.+++ .++.|+.+..||+.-. +....++.| +.+++++.-.++++|+.
T Consensus 593 dL~kqe-lvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 593 DLSKQE-LVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred ehhHHH-HHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC
Confidence 998633 3555555567899999999998777 7888999999999754 555666655 45788888899999999
Q ss_pred CCeEEEEec-----------------------c--cceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 700 NCYLLLHRI-----------------------F--LNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 700 Dg~I~vh~~-----------------------~--v~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
|+++.|... . ..++...+.+..-+|+++|.||+|++|.
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 999888211 1 2345545555467999999999999983
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.44 E-value=2.1e-12 Score=131.30 Aligned_cols=172 Identities=19% Similarity=0.333 Sum_probs=124.9
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
..+.+.++|.|+..+. ...+|++.+ ..+++|....++ .......+... ..-..+..++
T Consensus 96 ~YP~tK~~wiPd~~g~----------~pdlLATs~--D~LRlWri~~ee-~~~~~~~~L~~---------~kns~~~aPl 153 (364)
T KOG0290|consen 96 PYPVTKLMWIPDSKGV----------YPDLLATSS--DFLRLWRIGDEE-SRVELQSVLNN---------NKNSEFCAPL 153 (364)
T ss_pred CCCccceEecCCcccc----------Ccchhhccc--CeEEEEeccCcC-Cceehhhhhcc---------CcccccCCcc
Confidence 3455566677665421 124566543 578999665431 11111111100 1123466789
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe--
Q 004603 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-- 631 (743)
Q Consensus 559 ~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~---~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~-- 631 (743)
+++.|+. +-++|.+++-|-++.|||++++. ....+..|...|++|+|... -..||+++.||.||+||+|....
T Consensus 154 TSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST 233 (364)
T KOG0290|consen 154 TSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST 233 (364)
T ss_pred cccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce
Confidence 9999997 88899999999999999999853 35667899999999999885 45789999999999999974221
Q ss_pred ---------------------------------------------eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603 632 ---------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 632 ---------------------------------------------~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir 666 (743)
++..+.+|.+.|++|+|.|.....+++|+.|..+.
T Consensus 234 IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 234 IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL 313 (364)
T ss_pred EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEE
Confidence 24566789999999999999888999999999999
Q ss_pred EEECCC
Q 004603 667 YWSINN 672 (743)
Q Consensus 667 vWDl~t 672 (743)
+||+..
T Consensus 314 iWDl~q 319 (364)
T KOG0290|consen 314 IWDLQQ 319 (364)
T ss_pred EEeccc
Confidence 999875
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=7e-13 Score=145.01 Aligned_cols=130 Identities=21% Similarity=0.341 Sum_probs=111.3
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--------CCeEEEEEcccCCCEEEEEEcCCCCEEEEEe
Q 004603 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~--------t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs 616 (743)
+....++..|.+.|+.++|++....|++|+.|+++++|++. ..+++.+|++|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 45555888999999999999999999999999999999982 2467889999999999999999999999999
Q ss_pred CCCeEEEEECCC---------CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee
Q 004603 617 ADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 617 ~Dg~VrvWDl~~---------~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~ 675 (743)
.||+|++|++-. ......++.||++.|+.+++++.... |++|+.||+||.|+......
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc
Confidence 999999995431 12334578899999999999998654 66999999999999876554
No 178
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.42 E-value=1.5e-11 Score=132.90 Aligned_cols=211 Identities=16% Similarity=0.187 Sum_probs=152.7
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW 582 (743)
++.++.+++++.|+.+++|.. ....+..+ -.+++.|+.|+|.| .||.|...|...|.
T Consensus 377 hps~~q~~T~gqdk~v~lW~~-----------------~k~~wt~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWND-----------------HKLEWTKI-----IEDPAECADFHPSG-VVAVGTATGRWFVL 433 (626)
T ss_pred CCChhheeeccCcceEEEccC-----------------CceeEEEE-----ecCceeEeeccCcc-eEEEeeccceEEEE
Confidence 445678899999999999941 11111111 23568899999999 99999999999999
Q ss_pred ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-EecCCCCeEEEEEecCCCcEEEEEeC
Q 004603 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 583 d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~-l~~h~~~V~sl~fsp~g~~lL~Sgs~ 661 (743)
|+++...+..-.. ...+++|+|+|+|.+||.|+.|+.|++|.+......... -+.|.++|+.|+|++|+. +|.+-+.
T Consensus 434 d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~-~~~~~S~ 511 (626)
T KOG2106|consen 434 DTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ-FLVSNSG 511 (626)
T ss_pred ecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc-eEEeccC
Confidence 9998555544333 889999999999999999999999999999776543333 233448999999999976 6669999
Q ss_pred CCcEEEEECCCCee---eEEEe--------------cc-----CceeeecCCCEEEEEecCCeEEEEecc----------
Q 004603 662 NSEIRYWSINNGSC---AGVFK--------------VC-----NLMPIILKGCFILNSIFNCYLLLHRIF---------- 709 (743)
Q Consensus 662 Dg~IrvWDl~tg~~---v~~~~--------------~~-----~~i~~s~~g~~l~sgs~Dg~I~vh~~~---------- 709 (743)
|-.|-+|....-+. ++.++ +. ..++.+.++..+++|.+.|+|++...+
T Consensus 512 d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he 591 (626)
T KOG2106|consen 512 DYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHE 591 (626)
T ss_pred ceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccccee
Confidence 99999994332111 11111 00 124455678899999999999993322
Q ss_pred -----cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 710 -----LNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 710 -----v~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
.....+.+.++...+.+.+.|..|+.|+-
T Consensus 592 ~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 592 YGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 12344455555677888889999999973
No 179
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.42 E-value=2.4e-12 Score=139.85 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=114.8
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCc----------c-ccccccCCCceeeeE
Q 004603 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR----------V-GRSAEVGKGFTFTEF 548 (743)
Q Consensus 480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~----------~-~~~~~~~~~~~~~~~ 548 (743)
..++++.|-|... ..+...-+++++.+++.......... + +..+.... .-.++
T Consensus 220 tsvT~ikWvpg~~--------------~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~--~rNPv 283 (636)
T KOG2394|consen 220 SSVTCIKWVPGSD--------------SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKK--TRNPV 283 (636)
T ss_pred cceEEEEEEeCCC--------------ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccc--cCCcc
Confidence 5777888887554 45556667788888844221111100 0 01111111 11334
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004603 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 549 ~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~ 628 (743)
....--.+.|..++|+|||++||+.+.||.+||||.++.+.+..++..-+...||+|+|||++|++|+.|..|.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 44444456899999999999999999999999999999888877777778899999999999999999999999999987
Q ss_pred CCeeEEEEecCCCCeEEEEEec
Q 004603 629 PDYSLRTFTGHSTTVMSLDFHP 650 (743)
Q Consensus 629 ~~~~l~~l~~h~~~V~sl~fsp 650 (743)
.+. +..-.+|.++|..|+|+|
T Consensus 364 rRV-VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 RRV-VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceE-EEeccccccceeeEeecc
Confidence 554 777889999999999997
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.42 E-value=2.7e-12 Score=139.20 Aligned_cols=202 Identities=15% Similarity=0.151 Sum_probs=145.2
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..++.++.||.+.+..- ..+..+.+.+|.+.|.|-.|+|||.-|+|+++||.|++|. ++
T Consensus 76 d~~~i~s~DGkf~il~k--------------------~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rs 134 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK--------------------SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RS 134 (737)
T ss_pred ceEEEEcCCceEEEecc--------------------cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-cc
Confidence 44556667888877711 1123355678999999999999999999999999999998 45
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir 666 (743)
|-...++......|+|++|.|+...++-|- .+.+.+=-+..... +-..+.|.+-|.+++|++... ++++|++|...+
T Consensus 135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK 211 (737)
T KOG1524|consen 135 GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK 211 (737)
T ss_pred chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence 555556666778899999999866554443 34455545554343 556788999999999999865 888999999999
Q ss_pred EEECCCCeeeEEEecc----CceeeecCCCEEEEEecCCeEEEEecc-cceEEEEecCCCCEEEEEeCCCeEEE
Q 004603 667 YWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIF-LNLLSVSEWCNPDEISTSSWKDSCCS 735 (743)
Q Consensus 667 vWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~-v~~l~v~~~~~~~~laSgs~DG~V~i 735 (743)
|||-- |..+.....| ++++|.|+ ..++.|+.+ ++++.... ...+.+++..++..+++|...|.|.+
T Consensus 212 vWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 212 IWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 99976 4444443333 56888899 555556554 55553332 23445555555889999999998765
No 181
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.41 E-value=2.4e-13 Score=153.44 Aligned_cols=178 Identities=24% Similarity=0.322 Sum_probs=144.2
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
..++|.+|+.|..|++|...+ ..+....+||.+.|+.++.+.+..++++++.|+.|++|.+
T Consensus 201 tg~~Iitgsdd~lvKiwS~et-------------------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 201 TGRYIITGSDDRLVKIWSMET-------------------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred ccceEeecCccceeeeeeccc-------------------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 348999999999999995433 3566778999999999999999999999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCC-------------------------------e-
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-------------------------------Y- 631 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~-~~~-------------------------------~- 631 (743)
..+.++.++.+|++.|++++|+|-. +.+.||++++||.+ ... .
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999953 77889999999986 000 0
Q ss_pred ----------------------------------------e---------EEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603 632 ----------------------------------------S---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 632 ----------------------------------------~---------l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D 662 (743)
| ++.+.+|...++.+.+||-...+..+++.|
T Consensus 338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d 417 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD 417 (1113)
T ss_pred cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCC
Confidence 0 112236778899999999988888899999
Q ss_pred CcEEEEECCCCeeeEEEec-cCc---eeeecCCCEEEEEecCCeEEE
Q 004603 663 SEIRYWSINNGSCAGVFKV-CNL---MPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~-~~~---i~~s~~g~~l~sgs~Dg~I~v 705 (743)
|.+.|||+-.|..++.+.. |.. ..|+.+|..++....-|.+.|
T Consensus 418 gst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 418 GSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred CceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEE
Confidence 9999999999987776653 221 347788877776666666555
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=7.3e-12 Score=144.68 Aligned_cols=224 Identities=12% Similarity=0.094 Sum_probs=157.1
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
..++.+|+.||.|++|..........+.+..|....+. +.+..+.=.-++|-....+|+++|+-+.|+|||++
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~-------~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ-------LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeecccccc-------CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence 46889999999999995554433333333333322211 11112222446777655556666668899999998
Q ss_pred CCeEEEEEc-ccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCC--eEEEEEecCCCcEEEEE
Q 004603 586 SFTVKSTLE-EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTT--VMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 586 t~~~i~~l~-~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~h~~~--V~sl~fsp~g~~lL~Sg 659 (743)
...++..+. +-..-|+++.-+- .|+.|+.|..||.||+||.|... ..+..++.|... |..+.+.+.|-.-|++|
T Consensus 1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee
Confidence 877666553 3344566654433 47899999999999999988643 357888899988 99999999877668899
Q ss_pred eCCCcEEEEECCCCeeeE---EEe----c--cCceeeecCCCEEEEEecCCeEEEEeccc--------------------
Q 004603 660 DNNSEIRYWSINNGSCAG---VFK----V--CNLMPIILKGCFILNSIFNCYLLLHRIFL-------------------- 710 (743)
Q Consensus 660 s~Dg~IrvWDl~tg~~v~---~~~----~--~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------------- 710 (743)
+.||.|++||+|...... ... | ++++.++.....+++|+. +.|+||+...
T Consensus 1276 s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred ccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCc
Confidence 999999999999742111 111 2 567889999999999998 8999987543
Q ss_pred ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 711 NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 711 ~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.++.+.+. .-.+++|+.|.+|.||...
T Consensus 1355 scL~FHP~--~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1355 SCLAFHPH--RLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ceeeecch--hHhhhhccCCceEEEeecC
Confidence 23344433 5689999999999999653
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.40 E-value=2.9e-12 Score=135.42 Aligned_cols=148 Identities=22% Similarity=0.332 Sum_probs=123.0
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603 556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 556 ~~V~siafspdg~-~LaSgs~Dg~V~IWd~~t~---------~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD 625 (743)
.+|.++.|.+... +|+||+.|..|+||-+... +....+..|...|++|+|+|+|.+|+||+.+|.|.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5699999998655 9999999999999987532 23456788999999999999999999999999999997
Q ss_pred CC--------C-----C--CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----ee
Q 004603 626 TE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MP 686 (743)
Q Consensus 626 l~--------~-----~--~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~ 686 (743)
.. + . ....+.+.+|...|+.++|+|++. ++++++.|..+++||++.|.....+..|.. ++
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 65 2 1 122456778999999999999976 677999999999999999999988887744 67
Q ss_pred eecCCCEEEEEecCCeEE
Q 004603 687 IILKGCFILNSIFNCYLL 704 (743)
Q Consensus 687 ~s~~g~~l~sgs~Dg~I~ 704 (743)
+.|-.+|+++-+.|...+
T Consensus 173 wDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPE 190 (434)
T ss_pred cchhhhhhhhhccCcccc
Confidence 888888888888777433
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.39 E-value=1.4e-11 Score=126.99 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=151.6
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (743)
Q Consensus 480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (743)
.++.+..|+.|.. .++.+.....|.+|.... ...++..+++..|...|+
T Consensus 11 ~pitchAwn~drt---------------~iAv~~~~~evhiy~~~~----------------~~~w~~~htls~Hd~~vt 59 (361)
T KOG1523|consen 11 EPITCHAWNSDRT---------------QIAVSPNNHEVHIYSMLG----------------ADLWEPAHTLSEHDKIVT 59 (361)
T ss_pred CceeeeeecCCCc---------------eEEeccCCceEEEEEecC----------------CCCceeceehhhhCccee
Confidence 3667777887774 567777777788883321 223678899999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECC-C--CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---eE
Q 004603 560 SCHFSPDGKLLATGGHDKKAVLWCTE-S--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SL 633 (743)
Q Consensus 560 siafspdg~~LaSgs~Dg~V~IWd~~-t--~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~---~l 633 (743)
+|+|+|..+.|++|+.|+..+||... . .++...+..|...++||.|+|.++.|++|+....|.||-++.... +.
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 99999999999999999999999883 3 345556667889999999999999999999999999998764321 12
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC-----C-------------CeeeEEEe----ccCceeeecCC
Q 004603 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----N-------------GSCAGVFK----VCNLMPIILKG 691 (743)
Q Consensus 634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~-----t-------------g~~v~~~~----~~~~i~~s~~g 691 (743)
+.-+.+.+.|.+++|||++ -+|++|+.|+.+|||..- . |..+..+. ....+.|++.|
T Consensus 140 hikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred hhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC
Confidence 2344677899999999985 488899999999999642 1 11122221 12457899999
Q ss_pred CEEEEEecCCeEEEEecc
Q 004603 692 CFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 692 ~~l~sgs~Dg~I~vh~~~ 709 (743)
+.|+-.+.|..+.+-+..
T Consensus 219 ~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CEeeEecCCCceEEeecC
Confidence 999999999999985543
No 185
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.7e-11 Score=131.46 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=150.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEEcccCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCe
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t--~~~i~~l~~H~~~V~~vafsp~~~-~LaSgs~Dg~VrvWDl~~~~~ 631 (743)
.+.|+||.|+|...+|++|+.|++++||-++. ...+..+.--..+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46799999999999999999999999998864 334555555678899999999998 899999999999999987653
Q ss_pred -eEEEEecCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCCeEEEE
Q 004603 632 -SLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 632 -~l~~l~~h~-~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh 706 (743)
.+....++. ..+.....++++. +|+..+..|.|.+....+++.+.+++.. ..++|+.++..|++.+.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 122333444 3567788899987 6667888999999999999999888753 557899999999999999999998
Q ss_pred eccc-------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCccc
Q 004603 707 RIFL-------------NLLSVSEWCNPDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 707 ~~~v-------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~~~ 742 (743)
+..- ....++...++.++|+|+..|.|-|||...++
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 7543 33444544557899999999999999966554
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.36 E-value=1.8e-11 Score=139.55 Aligned_cols=209 Identities=16% Similarity=0.181 Sum_probs=150.0
Q ss_pred cccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004603 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (743)
+.+.....+.++.|+|... .+++.|+.+|.|.+|+.....+.. ....-.....
T Consensus 237 ~~~~~~s~v~~~~f~p~~p--------------~ll~gG~y~GqV~lWD~~~~~~~~-------------~s~ls~~~~s 289 (555)
T KOG1587|consen 237 LVLESPSEVTCLKFCPFDP--------------NLLAGGCYNGQVVLWDLRKGSDTP-------------PSGLSALEVS 289 (555)
T ss_pred EEEecCCceeEEEeccCCc--------------ceEEeeccCceEEEEEccCCCCCC-------------Cccccccccc
Confidence 3344455666666666443 789999999999999776553211 1111222346
Q ss_pred CCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCe-------------------------------------------
Q 004603 554 STSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT------------------------------------------- 588 (743)
Q Consensus 554 H~~~V~siafspdg--~~LaSgs~Dg~V~IWd~~t~~------------------------------------------- 588 (743)
|..+|+.+.|-.+. .-|++++.||.|+.|+++...
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~ 369 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE 369 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC
Confidence 88899999996633 458899999999999775210
Q ss_pred --E------------------EEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 004603 589 --V------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (743)
Q Consensus 589 --~------------------i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~f 648 (743)
. ...+..|.+.|+++.++|-+..++..+.|.+|++|.......++..+..+...|++++|
T Consensus 370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 0 00112467889999999976655555559999999987445567778888888999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEECCCCe--eeEEEec----cCceeeecCCCEEEEEecCCeEEEEecc
Q 004603 649 HPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKV----CNLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 649 sp~g~~lL~Sgs~Dg~IrvWDl~tg~--~v~~~~~----~~~i~~s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
+|..+-+|+++..||.|.|||+.... ++.+.+. .+.+.+++.|+.|++|...|++.+++..
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 99999999999999999999997543 3333322 2345677889999999999998887664
No 187
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.36 E-value=1.3e-11 Score=127.53 Aligned_cols=157 Identities=20% Similarity=0.325 Sum_probs=128.5
Q ss_pred eeCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCeEEEEE-----cccCCCEEEEEEcCC----CCEEEEEe
Q 004603 551 IPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFTVKSTL-----EEHTQWITDVRFSPS----LSRLATSS 616 (743)
Q Consensus 551 l~~H~~~V~siafsp-----dg~~LaSgs~Dg~V~IWd~~t~~~i~~l-----~~H~~~V~~vafsp~----~~~LaSgs 616 (743)
.+.|+.+|..++|++ +...+++++. ..|.||.+...--++.+ ..|....+.++|.-+ ..++|.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457889999999985 2346677664 46888887643322222 236777888888763 34788899
Q ss_pred CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC-------ceeeec
Q 004603 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-------LMPIIL 689 (743)
Q Consensus 617 ~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~-------~i~~s~ 689 (743)
.-|.|||.|+.++. +...+.+|...|+.|.|+|+...++++||.|..||+|++++..|+..|.+.. ++.|+.
T Consensus 113 ~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred ceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 99999999999865 4788999999999999999999999999999999999999999999997632 367889
Q ss_pred CCCEEEEEecCCeEEEEecc
Q 004603 690 KGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 690 ~g~~l~sgs~Dg~I~vh~~~ 709 (743)
+|.+|++++.|..+++|+..
T Consensus 192 ~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred CCCeeeccCCcceEEEEecC
Confidence 99999999999999999887
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=4.4e-11 Score=135.21 Aligned_cols=183 Identities=18% Similarity=0.115 Sum_probs=127.7
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeE--EEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEE
Q 004603 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 622 (743)
Q Consensus 549 ~~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~--i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~Vr 622 (743)
..+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ..+++|+||++.|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 4456778889999999999999888754 3699999988754 3334443 44789999999887764 688766
Q ss_pred EE--ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEecc-CceeeecCCCEEEEEe
Q 004603 623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVC-NLMPIILKGCFILNSI 698 (743)
Q Consensus 623 vW--Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~-~~i~~s~~g~~l~sgs 698 (743)
|| |+.++. +..+..+...+.+++|+|+|..+++++..++.++||+++.. .....+... ....++|+|.+|+..+
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMIN 351 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEc
Confidence 65 555443 45566677778899999999988877777888888877532 222222211 2356899999998887
Q ss_pred cCCeEEEEecccc----------eEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 699 FNCYLLLHRIFLN----------LLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 699 ~Dg~I~vh~~~v~----------~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
.++.+. |+.... .....+.+++..|+.++.+|.+.+|.
T Consensus 352 ~~~i~~-~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 352 GDNVVK-QDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CCCEEE-EECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 776555 442211 11123344577999999999888774
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.35 E-value=5.3e-10 Score=121.63 Aligned_cols=180 Identities=10% Similarity=0.128 Sum_probs=122.4
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-C---eEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCC
Q 004603 557 KVESCHFSPDGKLLATGGH-DKKAVLWCTES-F---TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPD 630 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~-Dg~V~IWd~~t-~---~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~ 630 (743)
....++|+|++++|++++. ++.|.+|++++ + +.+..+. +...+.+++|+|+++++++++ .++.|++||+.+..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 4678999999998888875 78999999964 2 2333333 234467889999998886554 57999999998643
Q ss_pred eeE----EEEe-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC--C--eeeEEEecc----------CceeeecCC
Q 004603 631 YSL----RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G--SCAGVFKVC----------NLMPIILKG 691 (743)
Q Consensus 631 ~~l----~~l~-~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t--g--~~v~~~~~~----------~~i~~s~~g 691 (743)
... .... .....+..+.|+|++.+++++...+++|.+||+.. + +.+..+... ..+.++|+|
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 211 0011 12244678999999998877777789999999973 3 333333321 126688999
Q ss_pred CEEEEEe-cCCeEEEEeccc--------c-------eEEEEecCCCCEEEEEeC-CCeEEEeC
Q 004603 692 CFILNSI-FNCYLLLHRIFL--------N-------LLSVSEWCNPDEISTSSW-KDSCCSHR 737 (743)
Q Consensus 692 ~~l~sgs-~Dg~I~vh~~~v--------~-------~l~v~~~~~~~~laSgs~-DG~V~iWd 737 (743)
++++++. .++.|.+++... . ...+....++.+|+++.. +++|.+|+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 9999985 467888875411 0 012333445777777665 89999995
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=9.8e-12 Score=132.35 Aligned_cols=174 Identities=24% Similarity=0.262 Sum_probs=127.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe-
Q 004603 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 637 (743)
Q Consensus 559 ~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~- 637 (743)
.+++|+.+|..|++|+.||++|||+..+...+..+..|.+.|.++.|+||+++|++-+.| ..+|||++++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 689999999999999999999999988888888888999999999999999999999999 999999998743 44333
Q ss_pred -cCCCCeEEEEEecCC--CcE--EEEEeCCCcEEEEECCC---------CeeeEEEeccCceeeecCCCEEEEEecCCeE
Q 004603 638 -GHSTTVMSLDFHPSK--EDL--LCSCDNNSEIRYWSINN---------GSCAGVFKVCNLMPIILKGCFILNSIFNCYL 703 (743)
Q Consensus 638 -~h~~~V~sl~fsp~g--~~l--L~Sgs~Dg~IrvWDl~t---------g~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I 703 (743)
........+.|.-++ +.+ ++.-..-+.|+.||+.. .+.+..++..+++.++.+|+|++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 122334556666554 222 22333445677766542 2233444556778899999999999999998
Q ss_pred EE---------------EecccceEEEEecCCCCEEEEEeCCCeEEEe
Q 004603 704 LL---------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 704 ~v---------------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iW 736 (743)
.+ |...++.+.++++ ..++++.+.|....+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd--sr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPD--SRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCC--cCcccccccCCceeEE
Confidence 88 5555566666654 5566666666655543
No 191
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.31 E-value=1.8e-10 Score=116.02 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=91.8
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 004603 555 TSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENP 629 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSg--s~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~D---g~VrvWDl~~~ 629 (743)
.++|.+++|+|+|+.||+. ..++.|.+||++ ++.+..+. ...+..|.|+|+|++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4569999999999986554 457899999997 66666664 5678899999999999998754 67999999964
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCcEEEEEeC-----CCcEEEEECCCCeeeEEEe
Q 004603 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~-----Dg~IrvWDl~tg~~v~~~~ 680 (743)
.. +.++. | ..++.++|+|+|++++++.+. |..++||+.. |+.+....
T Consensus 136 ~~-i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 136 KK-ISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EE-eeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 43 55544 3 347899999999987766553 8889999985 66655443
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.4e-11 Score=133.91 Aligned_cols=162 Identities=19% Similarity=0.292 Sum_probs=129.7
Q ss_pred cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEe-eCC
Q 004603 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PAS 554 (743)
Q Consensus 476 ~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H 554 (743)
..+..-+.++.|+.+| .+|++||.|-.+-+|+. +..+.++.+ .+|
T Consensus 47 ~GH~GCVN~LeWn~dG---------------~lL~SGSDD~r~ivWd~-------------------~~~KllhsI~TgH 92 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADG---------------ELLASGSDDTRLIVWDP-------------------FEYKLLHSISTGH 92 (758)
T ss_pred ccccceecceeecCCC---------------CEEeecCCcceEEeecc-------------------hhcceeeeeeccc
Confidence 3455567788898888 69999999999999933 333444444 589
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCC----------CeEEEEEcccCCCEEEEEEcCCC-CEEEEEeCCCeE
Q 004603 555 TSKVESCHFSP--DGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTV 621 (743)
Q Consensus 555 ~~~V~siafsp--dg~~LaSgs~Dg~V~IWd~~t----------~~~i~~l~~H~~~V~~vafsp~~-~~LaSgs~Dg~V 621 (743)
+.-|.|+.|-| ..++|++|..|+.|+|+|+.. .+..+.+..|+..|..|+-.|++ +.|.+++.||+|
T Consensus 93 taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti 172 (758)
T KOG1310|consen 93 TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI 172 (758)
T ss_pred ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence 99999999999 567899999999999999984 23445567799999999999986 788999999999
Q ss_pred EEEECCCCCeeEEEEe---------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 622 RVWDTENPDYSLRTFT---------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 622 rvWDl~~~~~~l~~l~---------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
|-+|++.+..|-.... ...-...+++.+|..+++|+.|+.|-.+|+||.+
T Consensus 173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 9999998654432221 1223467899999999999999999999999965
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=8.1e-11 Score=123.55 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=123.7
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
++||++|+.|..+++|.....- ...+.+++.... .|..-|.|++|....++|++|+.+++|.+.|+
T Consensus 68 ~~~L~SGGDD~~~~~W~~de~~-------------~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 68 DRFLASGGDDMHGRVWNVDELM-------------VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred CeEEeecCCcceeeeechHHHH-------------hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 5899999999999999443221 111224444443 35588999999999999999999999999999
Q ss_pred CCCeEEEEEcc--cCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--EEEEecCCCCeEEEEEecCCCcEEEEEe
Q 004603 585 ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 585 ~t~~~i~~l~~--H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~--l~~l~~h~~~V~sl~fsp~g~~lL~Sgs 660 (743)
++.+.+.++.. ..+.|+.+..+|..+.|++.+.++.|.+||++....+ +..+.......+++.|+|..+.+|++.+
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 99888877753 2458999999999899999999999999999875422 2233334566789999999999999999
Q ss_pred CCCcEEEEECCCC
Q 004603 661 NNSEIRYWSINNG 673 (743)
Q Consensus 661 ~Dg~IrvWDl~tg 673 (743)
..+.+-|||++..
T Consensus 215 ~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQ 227 (609)
T ss_pred ccCCCCceeeccc
Confidence 9999999999864
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2.1e-11 Score=129.80 Aligned_cols=190 Identities=17% Similarity=0.206 Sum_probs=141.6
Q ss_pred eEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEE
Q 004603 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH 562 (743)
Q Consensus 483 s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~sia 562 (743)
.++.|+.++ ..+++|+.|+++++|.++.. ..+..+..|.+.|.+++
T Consensus 148 k~vaf~~~g---------------s~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~ 193 (398)
T KOG0771|consen 148 KVVAFNGDG---------------SKLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLD 193 (398)
T ss_pred eEEEEcCCC---------------CEeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccce
Confidence 566777766 68999999999999965443 33445567888999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCCCEEEEEEcCCC---C--EEEEEeCCCeEEEEECCCCCe----
Q 004603 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSL---S--RLATSSADRTVRVWDTENPDY---- 631 (743)
Q Consensus 563 fspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~--~H~~~V~~vafsp~~---~--~LaSgs~Dg~VrvWDl~~~~~---- 631 (743)
|+|||++|++-+.| ..+||+++++.++.... +-...+..++|.-++ . .++....-+.|+.||+..-+.
T Consensus 194 FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 194 FSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred eCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc
Confidence 99999999999999 89999999987766554 223446678887765 2 333444567788877643222
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec-----cCceeeecCCCEEEEEecCCeEEEE
Q 004603 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-----CNLMPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-----~~~i~~s~~g~~l~sgs~Dg~I~vh 706 (743)
..+....-...|.+++.+++|+ +++.|+.||.|-|++..+-+++..++. .+.+.|+|+.+++++-+.|....+.
T Consensus 273 ~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 273 RLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred chhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 1222222334699999999987 788899999999999999888877663 2568899999999998888766664
Q ss_pred ec
Q 004603 707 RI 708 (743)
Q Consensus 707 ~~ 708 (743)
..
T Consensus 352 ~l 353 (398)
T KOG0771|consen 352 KL 353 (398)
T ss_pred EE
Confidence 33
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.30 E-value=5.8e-10 Score=121.37 Aligned_cols=210 Identities=10% Similarity=0.056 Sum_probs=141.3
Q ss_pred EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-
Q 004603 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES- 586 (743)
Q Consensus 509 l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs-~Dg~V~IWd~~t- 586 (743)
.++...|+.|.+|+.... .+.+.+..+.. .+.+..++++|++++|++++ .++.|.+|+++.
T Consensus 5 y~~~~~~~~I~~~~~~~~----------------g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~ 67 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE----------------GALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD 67 (330)
T ss_pred EEEcCCCCCEEEEEECCC----------------CceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence 344567899999966321 12233444432 34577899999999887765 578899999863
Q ss_pred CeE--EEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe---eEEEEecCCCCeEEEEEecCCCcEEEEEe
Q 004603 587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 587 ~~~--i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~---~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs 660 (743)
+.. +.... .......++|+|++++|++++. ++.|.+||+.+... .+..+. +...+.+++|+|+++.+++++.
T Consensus 68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC
Confidence 332 22222 2345678999999998887764 89999999974321 223332 3345678899999998888888
Q ss_pred CCCcEEEEECCCCeeeE-----EEe-----ccCceeeecCCCEEEEEec-CCeEEEEeccc--------ceE--------
Q 004603 661 NNSEIRYWSINNGSCAG-----VFK-----VCNLMPIILKGCFILNSIF-NCYLLLHRIFL--------NLL-------- 713 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~~v~-----~~~-----~~~~i~~s~~g~~l~sgs~-Dg~I~vh~~~v--------~~l-------- 713 (743)
.++.|++||+.+...+. ... +...+.|+++|.++++... ++.|.+|+... ..+
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 88999999998633221 111 1245789999999988876 88998887541 001
Q ss_pred ------EEEecCCCCEEEEEe-CCCeEEEeC
Q 004603 714 ------SVSEWCNPDEISTSS-WKDSCCSHR 737 (743)
Q Consensus 714 ------~v~~~~~~~~laSgs-~DG~V~iWd 737 (743)
.+...+++.+++++. .+++|.+|+
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 122334567777775 478899986
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=1.9e-09 Score=113.36 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=119.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc---cCCCEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCC
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPD 630 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~---H~~~V~~vafsp~~~~LaSgs--~Dg~VrvWDl~~~~ 630 (743)
..|.+|.++ .++|+++-.+. |.|||+++.+.+.++.. |...+.++.+++.+.+++--+ ..|.|.|||+.+-.
T Consensus 88 t~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~ 164 (391)
T KOG2110|consen 88 TSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ 164 (391)
T ss_pred CceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence 458888885 45677766554 99999999999888754 455577777777777886543 37899999999855
Q ss_pred eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEECCCCeeeEEEeccC------ceeeecCCCEEEEEecCCeE
Q 004603 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKVCN------LMPIILKGCFILNSIFNCYL 703 (743)
Q Consensus 631 ~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~-IrvWDl~tg~~v~~~~~~~------~i~~s~~g~~l~sgs~Dg~I 703 (743)
++.++..|++.+.+|+|+++|. +|+++|+.|+ |||+.+.+|..+..|+... .++|++++.+|.+.+..++|
T Consensus 165 -~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 165 -PVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred -eeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 5889999999999999999986 8889998886 8999999999999998543 37799999999999999999
Q ss_pred EE
Q 004603 704 LL 705 (743)
Q Consensus 704 ~v 705 (743)
.+
T Consensus 243 Hi 244 (391)
T KOG2110|consen 243 HI 244 (391)
T ss_pred EE
Confidence 98
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.27 E-value=7.9e-10 Score=130.09 Aligned_cols=195 Identities=13% Similarity=0.144 Sum_probs=136.5
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW 582 (743)
.++..++++||.||+|++|+...-.. .+...+...++.--...|.++.+.+.+..+|.|+.||.|.+.
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~------------~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEG------------EGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhc------------CcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 45668999999999999996654321 112333344444456779999999999999999999999999
Q ss_pred ECCCC--e-----EEE-----------EE-------------------------------------cccCCCEEEEEEcC
Q 004603 583 CTESF--T-----VKS-----------TL-------------------------------------EEHTQWITDVRFSP 607 (743)
Q Consensus 583 d~~t~--~-----~i~-----------~l-------------------------------------~~H~~~V~~vafsp 607 (743)
+++.. + ..+ .+ ....+.|++++.+|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP 1205 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC
Confidence 87631 0 000 00 01235799999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC---cEEEEEe-CCCcEEEEECCCCeeeEEEeccC
Q 004603 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE---DLLCSCD-NNSEIRYWSINNGSCAGVFKVCN 683 (743)
Q Consensus 608 ~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~---~lL~Sgs-~Dg~IrvWDl~tg~~v~~~~~~~ 683 (743)
.+.++++|...|.+-+||+|-+......-.++...++.|+.+|--+ ..+++++ ..+.|.+|++.+|.+-.++...+
T Consensus 1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~ 1285 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASD 1285 (1431)
T ss_pred CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCC
Confidence 9999999999999999999965442233335567888888887644 3444444 57789999999998777665431
Q ss_pred c-----------------------eeeecCCCEEEEEecCCeEEEEecc
Q 004603 684 L-----------------------MPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 684 ~-----------------------i~~s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
. ..+...+.++++|+.|..|+.|+..
T Consensus 1286 ~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1286 GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 1 1122345678888889888887654
No 198
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.26 E-value=4.3e-10 Score=113.33 Aligned_cols=151 Identities=17% Similarity=0.255 Sum_probs=104.1
Q ss_pred EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CeEEEEEcc-cCCCEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 004603 559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATS--SADRTVRVW 624 (743)
Q Consensus 559 ~siafspdg~~LaSgs~---D-------g~V~IWd~~t-~~~i~~l~~-H~~~V~~vafsp~~~~LaSg--s~Dg~VrvW 624 (743)
..+.|+++|++|+.-.. | +...||.++. ...+..+.- ..+.|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987655433 2 2344555532 233334432 34569999999999987554 457899999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEECCCCeeeEEEecc--CceeeecCCCEEEEEec-
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIF- 699 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs--~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~l~sgs~- 699 (743)
|++. . .+..+. ...+..|.|+|+|..++++|. ..|.|.+||+++.+.+..+... +.+.++|+|++++++..
T Consensus 89 d~~~-~-~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVKG-K-KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCcc-c-EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEec
Confidence 9972 3 355553 567889999999986665542 3467999999999988877643 45789999999999875
Q ss_pred -----CCeEEEEecccceE
Q 004603 700 -----NCYLLLHRIFLNLL 713 (743)
Q Consensus 700 -----Dg~I~vh~~~v~~l 713 (743)
|+.++||+.....+
T Consensus 165 ~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred cceeccccEEEEEecCeEe
Confidence 55566666554433
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=9.1e-11 Score=121.99 Aligned_cols=170 Identities=14% Similarity=0.174 Sum_probs=127.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCC-CCe
Q 004603 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV 643 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp--~~~~LaSgs~Dg~VrvWDl~~~~~-~l~~l~~h~-~~V 643 (743)
..+|++...|.|++||..+++.+..|.+|...+..++|.. ....+.+|+.||+||+||+|.... .+..+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999976 467899999999999999997543 344555565 344
Q ss_pred EEEEEecCCCcEEEEEe----CCCcEEEEECCCCee-eEEEec-----cCceeeec-CCCEEEEEecCCeEEEEecc---
Q 004603 644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFKV-----CNLMPIIL-KGCFILNSIFNCYLLLHRIF--- 709 (743)
Q Consensus 644 ~sl~fsp~g~~lL~Sgs----~Dg~IrvWDl~tg~~-v~~~~~-----~~~i~~s~-~g~~l~sgs~Dg~I~vh~~~--- 709 (743)
.+++..-. ..++++|. .|-.|.+||+|..+. ++.+.. .+.+.|+| +.+.|++|+.||.|.+.+..
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 55555434 34776664 456799999998765 555432 25578887 56789999999999995532
Q ss_pred --------------cceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 710 --------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 710 --------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+..+.|.... -..|.+-+..++..+|+.+
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~-ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKK-YKRIMCLTHMETFAIYELE 242 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCC-cceEEEEEccCceeEEEcc
Confidence 3334443221 2379999999999999754
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.25 E-value=4e-11 Score=132.63 Aligned_cols=174 Identities=18% Similarity=0.314 Sum_probs=133.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
.|..++|-|||..|+.+.. ..+.|||+..|..+.++++|.+.|+||+|+.+|++|++|+.|+.|.+|...-.. +..+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee
Confidence 6999999999998887764 469999999999999999999999999999999999999999999999865432 2333
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE--EEeccCceeeecCCCEEEEEecCCeEEEEec------
Q 004603 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKVCNLMPIILKGCFILNSIFNCYLLLHRI------ 708 (743)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~--~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~------ 708 (743)
.|.+.|.|+.|+|-.. .|++|+.. ..-+|........+ ......++++..||.|++.|-.||+|.+...
T Consensus 91 -SH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred -ccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 4999999999999854 66688854 57889876543221 1112234668899999999999999999432
Q ss_pred ----------ccceEEEEecCC---CCEEEEEeCCCeEEEe
Q 004603 709 ----------FLNLLSVSEWCN---PDEISTSSWKDSCCSH 736 (743)
Q Consensus 709 ----------~v~~l~v~~~~~---~~~laSgs~DG~V~iW 736 (743)
.+-.+++++... ...++...|..++.++
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 223444444332 3567888888877766
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=8.2e-11 Score=123.50 Aligned_cols=125 Identities=18% Similarity=0.266 Sum_probs=105.1
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC------CCeEEEEEcc-cCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRT 620 (743)
Q Consensus 548 ~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~------t~~~i~~l~~-H~~~V~~vafsp~~~~LaSgs~Dg~ 620 (743)
.+.+.+|++.|.+|.|+.++++|++|+.|..++||+++ +.+++..... |...|.|++|+....+|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 45567999999999999999999999999999999985 3466665544 4589999999998899999999999
Q ss_pred EEEEECCCCCeeEEEEec--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603 621 VRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 621 VrvWDl~~~~~~l~~l~~--h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~ 674 (743)
|.+.|+.+... +.++.. ..+.|+.+..+|. .++|++.+.++.|.+||++...
T Consensus 129 VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 129 VIKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred eEeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCC
Confidence 99999998553 555542 2358999999999 5588899999999999998654
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=5.3e-10 Score=129.65 Aligned_cols=220 Identities=12% Similarity=0.129 Sum_probs=144.5
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcE
Q 004603 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKA 579 (743)
Q Consensus 502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp--dg~~LaSgs~Dg~V 579 (743)
++.....+++......|++|+...+.. +..+..-......|+.+.+-. |..++++|+.||.|
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~----------------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvI 1135 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRL----------------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVI 1135 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCce----------------eccccCCCCCCCccceeeeecccchhheeeeccCceE
Confidence 455567777777667888886655531 111111112345688888865 66799999999999
Q ss_pred EEEECC-----CCeEEEEEcc---c----CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 004603 580 VLWCTE-----SFTVKSTLEE---H----TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (743)
Q Consensus 580 ~IWd~~-----t~~~i~~l~~---H----~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~ 647 (743)
|||+-- +.+.+..+.+ + .+.=.-+.|.-...+|++++.-..|||||+.....+.....+.+..|+++.
T Consensus 1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 999632 2334443322 1 111134567665556666666899999999986554444445667788887
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCe---eeEEEeccCce------eeecCCC-EEEEEecCCeEEEEecccc------
Q 004603 648 FHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKVCNLM------PIILKGC-FILNSIFNCYLLLHRIFLN------ 711 (743)
Q Consensus 648 fsp~g~~lL~Sgs~Dg~IrvWDl~tg~---~v~~~~~~~~i------~~s~~g~-~l~sgs~Dg~I~vh~~~v~------ 711 (743)
-+-.+..++++|..||.||+||.|... .+..++.|+.. .+-+.|- .|++|+.||.|.+|+....
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 666556789999999999999998643 45666666442 3445454 4999999999999887651
Q ss_pred -----------eEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 712 -----------LLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 712 -----------~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
..++........+|||+. +.|+||+.
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 111111222457888888 99999975
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.23 E-value=5.8e-10 Score=127.40 Aligned_cols=182 Identities=16% Similarity=0.121 Sum_probs=131.6
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EE----EEcccCCCEEEEEEcCC--CCEEEEEeCCCeEEEEE
Q 004603 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWD 625 (743)
Q Consensus 555 ~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~--i~----~l~~H~~~V~~vafsp~--~~~LaSgs~Dg~VrvWD 625 (743)
...|+|+.|+| +..++|.|+.+|.|.+||++.+.. .. ....|+..|+.+.|..+ ..-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 45699999999 788999999999999999987554 21 22468899999999764 34599999999999999
Q ss_pred CCCCCeeEEEE-----e------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE---CCCCeeeEEEecc---------
Q 004603 626 TENPDYSLRTF-----T------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNGSCAGVFKVC--------- 682 (743)
Q Consensus 626 l~~~~~~l~~l-----~------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWD---l~tg~~v~~~~~~--------- 682 (743)
++.-..+.... . .-...+++++|.+..+..|+.|+++|.|..=+ .+.... ..++++
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSYKGHSTFITHIGP 400 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-ccccccccccccCcc
Confidence 87644322111 1 12245889999999999999999999887733 222220 122221
Q ss_pred -CceeeecCCCEEEEEecCCeEEEEecc---------------cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 683 -NLMPIILKGCFILNSIFNCYLLLHRIF---------------LNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 683 -~~i~~s~~g~~l~sgs~Dg~I~vh~~~---------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
..+.++|-+.-++..+.|-++++|... +..++|++.. +..++++..||.|.+||-
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr-pavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR-PAVFATVDGDGNLDIWDL 471 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-ceEEEEEcCCCceehhhh
Confidence 234455655555555559999998776 4556777765 688999999999999984
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.22 E-value=4.5e-11 Score=120.44 Aligned_cols=153 Identities=18% Similarity=0.274 Sum_probs=119.6
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
-+++.|-.++.|.+|+...+ +++..+. ...+.+..+..|..+|.++.|.+....=++|+.+.++..|++..
T Consensus 166 ~lllaGyEsghvv~wd~S~~----~~~~~~~-----~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTG----DKIIQLP-----QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred EEEEEeccCCeEEEEEccCC----ceeeccc-----cccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 46677888999999988765 2222211 12244556678999999999998666778888899999998863
Q ss_pred C--e--EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603 587 F--T--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 587 ~--~--~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D 662 (743)
. . ....++-....|..+++.||++.+||+++|+.||||..++.. ++..++-|...|++|+|+|+. .++++++.|
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~-~lmAaaskD 314 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDC-ELMAAASKD 314 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCC-chhhhccCC
Confidence 2 1 111122223458899999999999999999999999999866 488999999999999999995 488999999
Q ss_pred CcEEEEEC
Q 004603 663 SEIRYWSI 670 (743)
Q Consensus 663 g~IrvWDl 670 (743)
+.|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=1.7e-09 Score=124.25 Aligned_cols=217 Identities=15% Similarity=0.183 Sum_probs=153.4
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW 582 (743)
++-.+++++|..||.|.+|..... + ........+.-|.++|.+++|+++|.+|++||.+|.+.+|
T Consensus 214 spn~~~~Aa~d~dGrI~vw~d~~~--------------~-~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 214 SPNERYLAAGDSDGRILVWRDFGS--------------S-DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred ccccceEEEeccCCcEEEEecccc--------------c-cccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 334589999999999999933221 0 1112346678899999999999999999999999999999
Q ss_pred ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEEe--------cCCCCeEEEEEecCC
Q 004603 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFT--------GHSTTVMSLDFHPSK 652 (743)
Q Consensus 583 d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~--~l~~l~--------~h~~~V~sl~fsp~g 652 (743)
.+.+++ ..-+..-.+.|..+.++||+.+.+....|..|.+....+... .+..+. ...+-.+.++++|.-
T Consensus 279 q~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~ 357 (792)
T KOG1963|consen 279 QLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT 357 (792)
T ss_pred eecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence 999987 344445578899999999999999999999999987644221 111121 124557788999943
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeeEEEecc---------------CceeeecCCCEEEEEe--------cCCeE--EEE-
Q 004603 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKVC---------------NLMPIILKGCFILNSI--------FNCYL--LLH- 706 (743)
Q Consensus 653 ~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---------------~~i~~s~~g~~l~sgs--------~Dg~I--~vh- 706 (743)
..++-++..+.|.+||+-+.+.+..+... +.+..+..|.|+++.- .|+.+ ++|
T Consensus 358 -~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 358 -NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred -CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 35667888999999999988766555421 2233445688877763 24333 333
Q ss_pred ------------------ecccceEEEEecCCCCEEEEEeCCCeEEEe
Q 004603 707 ------------------RIFLNLLSVSEWCNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 707 ------------------~~~v~~l~v~~~~~~~~laSgs~DG~V~iW 736 (743)
.....+.++........++++|.||.+++|
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence 222333344333323489999999999999
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.3e-09 Score=123.21 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeE
Q 004603 558 VESCHFSPDGKLLATGG-HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL 633 (743)
Q Consensus 558 V~siafspdg~~LaSgs-~Dg~V~IW--d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~~~l 633 (743)
..+++|+|||+.|+.++ .|+.+.|| |+.+++ +..+..|...+.++.|+|+++.|+.++ .++.++||++.......
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 34689999999888764 68876665 665555 455666777888999999999776554 57888999875433323
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecCCeEEEEe
Q 004603 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~Dg~I~vh~ 707 (743)
..+ .+.. .++.|+|+|..+++++ .++ |.+||+.++++...... .....|+|+|.+|+.++.++.+.+|.
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 333 3443 4678999998665544 354 66799998876433222 23467999999999999888776654
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.17 E-value=1.3e-09 Score=112.59 Aligned_cols=184 Identities=11% Similarity=0.145 Sum_probs=142.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004603 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t---~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~ 630 (743)
-..+|+|-+|++|+..+|.+...+.|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 346799999999999999999999999998765 45788999999999999999999999999999999999985433
Q ss_pred --eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEE---Ee-----ccCceeeecCCCEEEEEecC
Q 004603 631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---FK-----VCNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 631 --~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~---~~-----~~~~i~~s~~g~~l~sgs~D 700 (743)
.+...+..|...+++|.|+|.+. .|++|+....|.||-++...--.+ ++ ...++.++|+...++.|+.|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 23445667889999999999865 777899899999998764321111 11 12457789999999999999
Q ss_pred CeEEEEecccc------------------------------eEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 701 CYLLLHRIFLN------------------------------LLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 701 g~I~vh~~~v~------------------------------~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+..+|....|+ +-.+.+...+..|+=.+.|++|.+-|.
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 99998433322 222333333667888888888877653
No 208
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=4.9e-10 Score=130.51 Aligned_cols=143 Identities=22% Similarity=0.354 Sum_probs=119.8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.-++++|+.-+.|-+|....+. .+ ..+.+|.+.|.++.|+.||+++++.|+|+++++|+++
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn------------------~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~ 205 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDN------------------KP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPID 205 (967)
T ss_pred EEEEEeccccccEEEEeccccC------------------Cc-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecc
Confidence 3577888888889999655221 11 1678999999999999999999999999999999999
Q ss_pred CCeEEE-EEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCcEEEEEeCCC
Q 004603 586 SFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 586 t~~~i~-~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~-~~V~sl~fsp~g~~lL~Sgs~Dg 663 (743)
+.+... +.-+|+++|+.++|+|+ +++|++.|-+.++|+..- .. +.++.+|. ..+..++.++.. .+++|++.|+
T Consensus 206 s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~-l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds 280 (967)
T KOG0974|consen 206 SREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQ-LEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDS 280 (967)
T ss_pred cccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ce-ehhhhhhhhcceeEEEEcCCc-eEEEeeccCc
Confidence 977665 77799999999999998 999999999999997764 22 56788886 568999988764 5788999999
Q ss_pred cEEEEECCC
Q 004603 664 EIRYWSINN 672 (743)
Q Consensus 664 ~IrvWDl~t 672 (743)
.|++||+..
T Consensus 281 ~lk~~~l~~ 289 (967)
T KOG0974|consen 281 TLKLWDLNG 289 (967)
T ss_pred chhhhhhhc
Confidence 999999875
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.5e-09 Score=113.10 Aligned_cols=193 Identities=17% Similarity=0.231 Sum_probs=146.4
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCC--Cc
Q 004603 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHD--KK 578 (743)
Q Consensus 502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~D--g~ 578 (743)
+.-.+.+|.+|-.+|++.+|....+... -.....+..+ ..+..+.-++ +..++++||.. ..
T Consensus 111 l~~~dg~Litc~~sG~l~~~~~k~~d~h---------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 111 LKLADGTLITCVSSGNLQVRHDKSGDLH---------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred hhhcCCEEEEEecCCcEEEEeccCCccc---------------cccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence 4445678888888999999954433100 1122222233 3366666666 44567779988 88
Q ss_pred EEEEECCCCeEEEEEcc---------cCCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 004603 579 AVLWCTESFTVKSTLEE---------HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (743)
Q Consensus 579 V~IWd~~t~~~i~~l~~---------H~~~V~~vafsp~--~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~ 647 (743)
++|||+...+.+..-+. -.-+++++.|-+. ...|++++.-+.||+||.+..+.++..|.--+.+|+++.
T Consensus 175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~ 254 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG 254 (412)
T ss_pred eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence 99999988754432211 1235788999886 788999999999999999999999999988889999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCeeeEE-Eecc----CceeeecCCCEEEEEecCCeEEEEecccc
Q 004603 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKVC----NLMPIILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 648 fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~-~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~ 711 (743)
..|++. ++++|..-+.+..||++.++...+ +++. +.+.++|.+.++++++.|+.|+||+...+
T Consensus 255 l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 255 LTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 999987 566888899999999999998777 5543 44778889999999999999999987763
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=2.7e-09 Score=122.62 Aligned_cols=209 Identities=17% Similarity=0.125 Sum_probs=151.8
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEE
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG---KLLATGGHDKKAVLWC 583 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg---~~LaSgs~Dg~V~IWd 583 (743)
+++... .+..|++|.. .+...+..+.+|+.+++.+.+.|.. .++++++.||.|++||
T Consensus 29 k~l~~~-~~~~V~VyS~-------------------~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 29 KFLFLC-TGNFVKVYST-------------------ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred cEEEEe-eCCEEEEEec-------------------chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence 344433 4578889833 3335666889999999999998843 4678999999999998
Q ss_pred CCCCeEEEEEc---------------------------------------------------------------------
Q 004603 584 TESFTVKSTLE--------------------------------------------------------------------- 594 (743)
Q Consensus 584 ~~t~~~i~~l~--------------------------------------------------------------------- 594 (743)
...+..++++.
T Consensus 89 ~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~ 168 (792)
T KOG1963|consen 89 WSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD 168 (792)
T ss_pred CCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE
Confidence 76544433321
Q ss_pred ----------------------------------ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCCeeEEEEe
Q 004603 595 ----------------------------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPDYSLRTFT 637 (743)
Q Consensus 595 ----------------------------------~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~---~~~~~l~~l~ 637 (743)
.|+..++|++++|+++++++|..||.|.+|.-- ......+.+.
T Consensus 169 ~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 169 NNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred cCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 255567999999999999999999999999632 2233456788
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec----cCceeeecCCCEEEEEecCCeEEEEeccc---
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIFNCYLLLHRIFL--- 710 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v--- 710 (743)
-|...|+++.|+++|.++| ||+..|.+.+|.+.+++. .-+.. ...+.++||+.+......|+.|.+-....
T Consensus 249 WH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred ecccccceeEEecCCceEe-ecccceEEEEEeecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 8999999999999998655 999999999999999872 22221 24477889999999888898888722210
Q ss_pred --------------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 711 --------------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 711 --------------------~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
-...++.++-.+.++-.+..|.|-+||
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYD 373 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEe
Confidence 011122222246777788888888886
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.15 E-value=8.4e-10 Score=120.13 Aligned_cols=178 Identities=13% Similarity=0.148 Sum_probs=126.1
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (743)
Q Consensus 480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (743)
....+-.|++||. -+.+.+.||.|++|.- .+ -...++.-...+|+
T Consensus 105 ~A~~~gRW~~dGt---------------gLlt~GEDG~iKiWSr-----------------sG---MLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 105 AAISSGRWSPDGA---------------GLLTAGEDGVIKIWSR-----------------SG---MLRSTVVQNEESIR 149 (737)
T ss_pred hhhhhcccCCCCc---------------eeeeecCCceEEEEec-----------------cc---hHHHHHhhcCceeE
Confidence 3445556777664 5788889999999922 11 11122223455799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC
Q 004603 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (743)
Q Consensus 560 siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h 639 (743)
|++|.|+...++-+-. +.+.|=-+.....+-.++.|.+-|.|+.|++..++++||+.|-..+|||..- . .+.+-..|
T Consensus 150 c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~-~Lf~S~~~ 226 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-A-NLFTSAAE 226 (737)
T ss_pred EEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-c-ccccCChh
Confidence 9999997765554432 4566655554445567889999999999999999999999999999999763 3 35666679
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEE
Q 004603 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 640 ~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~v 705 (743)
+-+|++++|+|+ . +++.++. .++|+=..+.|... .+.+++||.-+++|...|.+.+
T Consensus 227 ey~ITSva~npd-~-~~~v~S~-nt~R~~~p~~GSif-------nlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 227 EYAITSVAFNPE-K-DYLLWSY-NTARFSSPRVGSIF-------NLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccceeeeeeccc-c-ceeeeee-eeeeecCCCccceE-------EEEEcCCCceeeccccCceEEE
Confidence 999999999999 3 4556664 36775444444322 2567888888888888777665
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.12 E-value=1.8e-09 Score=127.15 Aligned_cols=168 Identities=16% Similarity=0.146 Sum_probs=124.7
Q ss_pred eeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEEcccCCCEEEEEEcCCCCEEEEEe
Q 004603 545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-------~~~i~~l~~H~~~V~~vafsp~~~~LaSgs 616 (743)
...+..+.+|+..|..++.++ ++.+|+|||.||+|||||++. .+...++.-....+.++.+.+.++.+|.++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 457888899999999999987 558999999999999999864 223344444467899999999999999999
Q ss_pred CCCeEEEEECCCCCe------eEEEEecCC-CCeE-EEEEecC-CCcEEEEEeCCCcEEEEECCCCeeeEEEec------
Q 004603 617 ADRTVRVWDTENPDY------SLRTFTGHS-TTVM-SLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKV------ 681 (743)
Q Consensus 617 ~Dg~VrvWDl~~~~~------~l~~l~~h~-~~V~-sl~fsp~-g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~------ 681 (743)
.||.|++.+++-... +.+....+. +.|. ..+|.-. +..+++.+..-+.|..||+++......++.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 999999999875211 111122222 2233 2333332 234777888889999999998766555442
Q ss_pred cCceeeecCCCEEEEEecCCeEEEEecccce
Q 004603 682 CNLMPIILKGCFILNSIFNCYLLLHRIFLNL 712 (743)
Q Consensus 682 ~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~ 712 (743)
.+.+++++.++|++.|+..|.+.+||.....
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence 3568899999999999999999999876543
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1e-08 Score=107.59 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=131.2
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
-+.+.++.|.|... .-++.|+. ..|++|........ .+.... .......+....+| ..|
T Consensus 140 QrnvtclawRPlsa--------------selavgCr-~gIciW~~s~tln~----~r~~~~-~s~~~~qvl~~pgh-~pV 198 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSA--------------SELAVGCR-AGICIWSDSRTLNA----NRNIRM-MSTHHLQVLQDPGH-NPV 198 (445)
T ss_pred hcceeEEEeccCCc--------------ceeeeeec-ceeEEEEcCccccc----cccccc-ccccchhheeCCCC-cee
Confidence 34677788887554 34455554 56899944322111 110000 01111223344567 679
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 559 ESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 559 ~siafspdg~~LaSgs~-Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
+++.|.+||..+++++. |..|+|||++++..+....---+.++-+.|+||+++|+.+..|+..++|.......+.+...
T Consensus 199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l 278 (445)
T KOG2139|consen 199 TSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL 278 (445)
T ss_pred eEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec
Confidence 99999999999999986 56799999999877665544466789999999999999999999999996654333333333
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-ee--------------eEEEe------c-------cCceeeec
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SC--------------AGVFK------V-------CNLMPIIL 689 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~--------------v~~~~------~-------~~~i~~s~ 689 (743)
-.+.|...+|+|+|..+|++++.. -++|.+.-. ++ +..+. + ...+++.|
T Consensus 279 -gsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp 355 (445)
T KOG2139|consen 279 -GSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP 355 (445)
T ss_pred -cCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC
Confidence 345899999999999999998854 455544311 10 00010 0 13478889
Q ss_pred CCCEEEEEecCCe
Q 004603 690 KGCFILNSIFNCY 702 (743)
Q Consensus 690 ~g~~l~sgs~Dg~ 702 (743)
.|.|+++-...+.
T Consensus 356 sGeyLav~fKg~~ 368 (445)
T KOG2139|consen 356 SGEYLAVIFKGQS 368 (445)
T ss_pred CCCEEEEEEcCCc
Confidence 9999998765443
No 214
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.11 E-value=1.2e-09 Score=110.28 Aligned_cols=154 Identities=17% Similarity=0.218 Sum_probs=113.7
Q ss_pred CCCCCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCC----------eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC
Q 004603 553 ASTSKVESCHFSP-DGK--LLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 553 ~H~~~V~siafsp-dg~--~LaSgs~Dg~V~IWd~~t~----------~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg 619 (743)
+..+.|.|..|.. ++. +++.|-++|.|.+||+.++ +.+.....|..+|.++.|.+....=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 4567788888654 333 4667778999999999987 33344467999999999998666667888899
Q ss_pred eEEEEECCCC--CeeEE-EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----ceeeecCCC
Q 004603 620 TVRVWDTENP--DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGC 692 (743)
Q Consensus 620 ~VrvWDl~~~--~~~l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~ 692 (743)
.+..|.+... ...+. +..-..-.|..+..-||++ ++++++.|+.||||..++...+.+++.|. .++|+|+..
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 9999988643 22222 1222235688899999976 89999999999999999999988888663 356666666
Q ss_pred EEEEEecCCeEEEEe
Q 004603 693 FILNSIFNCYLLLHR 707 (743)
Q Consensus 693 ~l~sgs~Dg~I~vh~ 707 (743)
.++.++.|.+|.+|+
T Consensus 307 lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 307 LMAAASKDARISLWK 321 (323)
T ss_pred hhhhccCCceEEeee
Confidence 666666666666664
No 215
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=1.3e-09 Score=127.10 Aligned_cols=185 Identities=16% Similarity=0.166 Sum_probs=136.6
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
...++.++.++.+.+|++........ ...+ +...+ ....-+-++++.-++++|+.-+.|.+|+..
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~-------i~~~----er~~l----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSK-------IQSD----ERCTL----YSSLIIGDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehh-------cCCC----ceEEE----EeEEEEeccCcEEEEEeccccccEEEEecc
Confidence 45667777777888876544421100 0000 01111 012234456677789999999999999986
Q ss_pred CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I 665 (743)
..+.-..+.+|.+.|.++.|+-+|.+++|+|.|.++|+|++++.+....+.-+|+..|+.++|+|. .+++++.|.+.
T Consensus 164 ~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctc 240 (967)
T KOG0974|consen 164 EDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTC 240 (967)
T ss_pred ccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEE
Confidence 433333688999999999999999999999999999999999977655577789999999999987 67799999999
Q ss_pred EEEECCCCeeeEEEeccC-----ceeeecCCCEEEEEecCCeEEEEecc
Q 004603 666 RYWSINNGSCAGVFKVCN-----LMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~~-----~i~~s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
++|+.+ ++.+.+++.|. .+.+.++...+++++.|+.+++|+..
T Consensus 241 rvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 241 RVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 999765 44445666552 36677788889999999999997654
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.09 E-value=3.8e-09 Score=111.13 Aligned_cols=118 Identities=22% Similarity=0.336 Sum_probs=96.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCC
Q 004603 553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENP 629 (743)
Q Consensus 553 ~H~~~V~siafspdg~~LaSgs--~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~-VrvWDl~~~ 629 (743)
.|...+.++++++.+.++|-=+ .-|.|.|||+.+.+.+.++..|.+.|-|++|+++|.+|||++..|+ ||||.+.++
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 3445577777777777887543 3588999999999999999999999999999999999999999887 599999987
Q ss_pred CeeEEEEecCC--CCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603 630 DYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 630 ~~~l~~l~~h~--~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t 672 (743)
.. +..|..-. ..|++|+|+|++. +|++.+..++|+||.+..
T Consensus 207 ~k-l~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 QK-LYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred cE-eeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 76 66665322 4589999999987 666777788999998864
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=2.6e-08 Score=112.84 Aligned_cols=157 Identities=12% Similarity=0.097 Sum_probs=113.0
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeCCCe--EE
Q 004603 549 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR 622 (743)
Q Consensus 549 ~~l~~H~~~V~siafspdg~~LaSgs~---Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~Dg~--Vr 622 (743)
..+..|...|.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|+|+.|+ +.+.++. |.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 445677888999999999998887764 467999999887654 4555667788999999998765 5555655 77
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEec---cCceeeecCCCEEEEE
Q 004603 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNS 697 (743)
Q Consensus 623 vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sg 697 (743)
+||+.++. +..+..+.....+.+|+|+|..++++...++ .|++||+..++....... .....++|+|.+|+..
T Consensus 274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 77888754 4556666666778999999987776665444 588889887655433322 2336799999999876
Q ss_pred ecC---CeEEEEec
Q 004603 698 IFN---CYLLLHRI 708 (743)
Q Consensus 698 s~D---g~I~vh~~ 708 (743)
+.+ ..|.+++.
T Consensus 352 ~~~~~~~~i~~~d~ 365 (435)
T PRK05137 352 KQGGGQFSIGVMKP 365 (435)
T ss_pred EcCCCceEEEEEEC
Confidence 543 24555553
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1.3e-08 Score=115.20 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=108.3
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 004603 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 625 (743)
Q Consensus 550 ~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~Dg~VrvWD 625 (743)
.+..+...|.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+||++.|+ +.+.++...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 344667789999999999998887643 359999999887543 333445677899999998876 567788777776
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEC--CCCeeeEE-Eec--cCceeeecCCCEEEEEecC
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGV-FKV--CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl--~tg~~v~~-~~~--~~~i~~s~~g~~l~sgs~D 700 (743)
++.....+..+..+...+.+..|+|+|+.+++++..++...||.+ .+++.... +.+ .....++|+|.+|+..+.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 532222245565566667788999999988776665666666654 44543222 222 1236799999999877655
Q ss_pred C---eEEEEec
Q 004603 701 C---YLLLHRI 708 (743)
Q Consensus 701 g---~I~vh~~ 708 (743)
+ .|.+++.
T Consensus 349 ~g~~~I~v~d~ 359 (427)
T PRK02889 349 GGAFKLYVQDL 359 (427)
T ss_pred CCcEEEEEEEC
Confidence 4 4666654
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.1e-08 Score=113.61 Aligned_cols=157 Identities=20% Similarity=0.149 Sum_probs=111.0
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeCCC--eEE
Q 004603 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (743)
Q Consensus 549 ~~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~Dg--~Vr 622 (743)
..+..|...|.+.+|+|||+.|+.++.+ ..|.+||+.+++... +..+.+.+.+++|+|+++.|+ +.+.++ .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3455677789999999999998887743 369999998876543 334455566889999998775 555555 599
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEECCCCeeeEEE-ec--cCceeeecCCCEEEEE
Q 004603 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF-KV--CNLMPIILKGCFILNS 697 (743)
Q Consensus 623 vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~--IrvWDl~tg~~v~~~-~~--~~~i~~s~~g~~l~sg 697 (743)
+||+.++. +..+..+......++|+|+|..++++...++. |.++|+.+++..... .+ .....++|+|.+|+..
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99998765 34555566666789999999877777665655 667787776643322 22 1246899999998876
Q ss_pred ecCC---eEEEEec
Q 004603 698 IFNC---YLLLHRI 708 (743)
Q Consensus 698 s~Dg---~I~vh~~ 708 (743)
+.++ .|.+|+.
T Consensus 354 ~~~~~~~~I~v~d~ 367 (433)
T PRK04922 354 HGSGGQYRIAVMDL 367 (433)
T ss_pred ECCCCceeEEEEEC
Confidence 5432 4666664
No 220
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=9.2e-10 Score=118.98 Aligned_cols=194 Identities=15% Similarity=0.128 Sum_probs=138.8
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE---------------------------------
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--------------------------------- 592 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~--------------------------------- 592 (743)
.....|..|.+.|..|.|+..|..|++|+.|..|.+||.-.++.+..
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 44567789999999999999999999999999999998754332221
Q ss_pred ---------------EcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCC---CeEEEEEecC
Q 004603 593 ---------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--SLRTFTGHST---TVMSLDFHPS 651 (743)
Q Consensus 593 ---------------l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~--~l~~l~~h~~---~V~sl~fsp~ 651 (743)
+..|.+.|..++.-|+ ...|.|++.|+.|.-+|++.... .+.+-..+.. ..++++.+|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 1247777888888885 45688899999999999886432 1222223333 5688999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCee------eEEEec----------cCceeeecCCCEEEEEecCCeEEE----------
Q 004603 652 KEDLLCSCDNNSEIRYWSINNGSC------AGVFKV----------CNLMPIILKGCFILNSIFNCYLLL---------- 705 (743)
Q Consensus 652 g~~lL~Sgs~Dg~IrvWDl~tg~~------v~~~~~----------~~~i~~s~~g~~l~sgs~Dg~I~v---------- 705 (743)
..+.+++++.|-.+||||.+.-.. +..+.. .+++.++.++.-+++...|-.|.+
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 999999999999999999875321 222221 244667777776666666666655
Q ss_pred -----------------EecccceEEEEecCC-CCEEEEEeCCCeEEEeCCC
Q 004603 706 -----------------HRIFLNLLSVSEWCN-PDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 706 -----------------h~~~v~~l~v~~~~~-~~~laSgs~DG~V~iWd~~ 739 (743)
|...-++..+.++++ ..++++|+.-|.|.||+..
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 222333445555543 4799999999999999875
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.04 E-value=6.5e-10 Score=119.51 Aligned_cols=160 Identities=13% Similarity=0.184 Sum_probs=129.3
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004603 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~Vrv 623 (743)
...++++++.|.. |..+.|-|.--+|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-.-.+-+|...|+|.+
T Consensus 199 ~GtElHClk~~~~-v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 199 NGTELHCLKRHIR-VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred CCcEEeehhhcCc-hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence 3467788888765 999999998889999999999999999999999998888888999999998889999999999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec-c--CceeeecCCCEEEEEecC
Q 004603 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-C--NLMPIILKGCFILNSIFN 700 (743)
Q Consensus 624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-~--~~i~~s~~g~~l~sgs~D 700 (743)
|...... ++..+..|.++|.+|+++++|. +++|.+.|..|+|||+++...+.++.. + ..++++..| +++.+..
T Consensus 278 WSP~ske-PLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G 353 (545)
T KOG1272|consen 278 WSPNSKE-PLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYG 353 (545)
T ss_pred cCCCCcc-hHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecC
Confidence 9998754 4667778999999999999987 666888899999999998877666654 2 234455444 3334444
Q ss_pred CeEEEEec
Q 004603 701 CYLLLHRI 708 (743)
Q Consensus 701 g~I~vh~~ 708 (743)
..|.+|..
T Consensus 354 ~~v~iw~d 361 (545)
T KOG1272|consen 354 DHVQIWKD 361 (545)
T ss_pred Ceeeeehh
Confidence 45666543
No 222
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=1e-08 Score=106.96 Aligned_cols=231 Identities=17% Similarity=0.252 Sum_probs=159.9
Q ss_pred cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC-
Q 004603 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS- 554 (743)
Q Consensus 476 ~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H- 554 (743)
..-..-++++.|..+| .+|++|..+|.|.+|.-..... + .......+..|
T Consensus 22 vteadiis~vef~~~G---------------e~LatGdkgGRVv~f~r~~~~~-------------~-ey~~~t~fqshe 72 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYG---------------ERLATGDKGGRVVLFEREKLYK-------------G-EYNFQTEFQSHE 72 (433)
T ss_pred echhcceeeEEeeccc---------------ceEeecCCCCeEEEeecccccc-------------c-ceeeeeeeeccC
Confidence 3344556667777766 6899999999999994333221 1 22222333333
Q ss_pred -----------CCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCe---------------------------------
Q 004603 555 -----------TSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFT--------------------------------- 588 (743)
Q Consensus 555 -----------~~~V~siafspdg~--~LaSgs~Dg~V~IWd~~t~~--------------------------------- 588 (743)
..+|..|.|.+++. .++..+.|++|++|-+....
T Consensus 73 pEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve 152 (433)
T KOG1354|consen 73 PEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE 152 (433)
T ss_pred cccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee
Confidence 34688999998654 67777889999999764211
Q ss_pred --EEEEE-cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--EEEEecCC-----CCeEEEEEecCCCcEEEE
Q 004603 589 --VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHS-----TTVMSLDFHPSKEDLLCS 658 (743)
Q Consensus 589 --~i~~l-~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~--l~~l~~h~-----~~V~sl~fsp~g~~lL~S 658 (743)
+.+.+ .+|+.-|.++.++.|...++++. |=.|.+|.+.-...+ +..++.+. ..|++..|||....+|+-
T Consensus 153 a~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y 231 (433)
T KOG1354|consen 153 ASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY 231 (433)
T ss_pred eeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE
Confidence 01111 36888999999999988888874 889999998654332 23333333 468999999998888988
Q ss_pred EeCCCcEEEEECCCCe-eeEE---Ee----------------ccCceeeecCCCEEEEEecCCeEEEEeccc--------
Q 004603 659 CDNNSEIRYWSINNGS-CAGV---FK----------------VCNLMPIILKGCFILNSIFNCYLLLHRIFL-------- 710 (743)
Q Consensus 659 gs~Dg~IrvWDl~tg~-~v~~---~~----------------~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v-------- 710 (743)
.+..|+||+-|+|... |... |. ....+.|+..|+|+++...- +|++|+...
T Consensus 232 SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETY 310 (433)
T ss_pred ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEE
Confidence 8889999999999432 1111 11 11346799999999987654 788888632
Q ss_pred --------------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 711 --------------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 711 --------------------~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
..+..++.++..++.||++...+++++
T Consensus 311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred eehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 123345555577999999999999998
No 223
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.1e-09 Score=132.55 Aligned_cols=180 Identities=22% Similarity=0.307 Sum_probs=141.0
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW 582 (743)
+++..+-.+|+.|+.|++|.+..+. .....++ +-...|+.+.|+..|+.+..+..||.+.+|
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~----------------~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQ----------------QVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCC----------------eEEEeec--cCcchhhhhhhcccCCceeeeccCCceeec
Confidence 3446788999999999999654431 1112222 223789999999999999999999999999
Q ss_pred ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE
Q 004603 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 583 d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~---Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg 659 (743)
.+. .++......|.....+++|-. ..+++++. ++.|.+||.-.+...-..-+.|.+.++++++.|... +|++|
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisg 2354 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISG 2354 (2439)
T ss_pred ccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEec
Confidence 987 677778888999999999864 66777653 789999997543321222278999999999999854 78899
Q ss_pred eCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEEeccc
Q 004603 660 DNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 660 s~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v 710 (743)
+.+|.|++||++..+.++.+.. +. ...++++|+..|.++||+...
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~-----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA-----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh-----hh-hhheeeccCcccceEEEEccc
Confidence 9999999999999888777765 33 677899999999999987653
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.01 E-value=1.8e-09 Score=117.88 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=104.0
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------------C--------------eEEEEEcccCCCEEEEEEc
Q 004603 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTES--------------F--------------TVKSTLEEHTQWITDVRFS 606 (743)
Q Consensus 556 ~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t--------------~--------------~~i~~l~~H~~~V~~vafs 606 (743)
..|+||.|-| +...|+.+..+|.+.+||... + .++..+..-.+.|...+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 6799999999 556788888999999997531 0 1112222234578889999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc--
Q 004603 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-- 684 (743)
Q Consensus 607 p~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-- 684 (743)
|||.+||+.+.||.+||||..+.. .+..++..-+...||+|+|||+ ++++|++|..|.||.+...+.+..-.+|..
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSWV 377 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSWV 377 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccccce
Confidence 999999999999999999998744 3556666778899999999998 666999999999999999998887777744
Q ss_pred --eeeec
Q 004603 685 --MPIIL 689 (743)
Q Consensus 685 --i~~s~ 689 (743)
++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 45554
No 225
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=5.7e-08 Score=99.75 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~--i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~ 634 (743)
..++.|++.+..++++-.+|.+.+-+...... +..+++|...++...|+. +.+++++|+.|+.+..||+|.+..++.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 56888999999999999999998666554433 347899999999999976 467899999999999999996555454
Q ss_pred E-EecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC-Ceee
Q 004603 635 T-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA 676 (743)
Q Consensus 635 ~-l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t-g~~v 676 (743)
. .+-|...|.+|.-+|..+.++++|+.|..|++||.|+ ++++
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 4 5668999999999998888999999999999999994 4543
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=6e-09 Score=110.35 Aligned_cols=163 Identities=13% Similarity=0.086 Sum_probs=127.8
Q ss_pred CCCCEEEEeeCC--CcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCC--CCEEEEEeCCCcE
Q 004603 504 DMDRFVDDGSLD--DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKA 579 (743)
Q Consensus 504 ~~~~~l~sGs~D--~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspd--g~~LaSgs~Dg~V 579 (743)
.+..++++|+.. +.+++|+.... ..+|..........--. -.-.++++.|-+. ...||++..-+.|
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle~~-------~qiw~aKNvpnD~L~Lr---VPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLEQS-------KQIWSAKNVPNDRLGLR---VPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CCCceEecCchhcccceeeeecccc-------eeeeeccCCCCccccce---eeeeeccceecCCCCCceEEEEecceeE
Confidence 345788889998 88999966544 22333222111000000 0124778999886 7899999999999
Q ss_pred EEEECCCC-eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEE
Q 004603 580 VLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (743)
Q Consensus 580 ~IWd~~t~-~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~S 658 (743)
++||.+.+ +++..|.--...|+++...|.++.|++|..-+.+..||++.+....+.+.+..+.|.+|..||.++ ++++
T Consensus 229 R~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las 307 (412)
T KOG3881|consen 229 RLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLAS 307 (412)
T ss_pred EEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEe
Confidence 99999864 577788777889999999999999999999999999999998876667999999999999999876 8889
Q ss_pred EeCCCcEEEEECCCCeeeE
Q 004603 659 CDNNSEIRYWSINNGSCAG 677 (743)
Q Consensus 659 gs~Dg~IrvWDl~tg~~v~ 677 (743)
|+.|..|||+|+.+.+.+.
T Consensus 308 ~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 308 CGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred eccceeEEEeecccchhhh
Confidence 9999999999999866543
No 227
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=5.4e-09 Score=113.15 Aligned_cols=232 Identities=14% Similarity=0.140 Sum_probs=153.8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCC-----------------------------CCccccccccCCCceeeeEEEeeCCCC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADP-----------------------------RDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
+.++++||.|..|.+|++...... ++.-++...........-.+.+..|.+
T Consensus 154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g 233 (559)
T KOG1334|consen 154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG 233 (559)
T ss_pred CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence 368899999999999976544211 011111111111111222455667999
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEE---cccCC---CEEEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q 004603 557 KVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQ---WITDVRFSPS-LSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 557 ~V~siafspd-g~~LaSgs~Dg~V~IWd~~t~~~i~~l---~~H~~---~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~ 628 (743)
.|.-++.-|+ ...|.+++.|+.|.-+|++...+...+ +.+.. ..++++.+|. ...+++++.|-.+|+||.+.
T Consensus 234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~ 313 (559)
T KOG1334|consen 234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR 313 (559)
T ss_pred ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccc
Confidence 9999999994 457999999999999998875433222 23333 5778999995 45899999999999999875
Q ss_pred CCe-----eEEEEec------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC--C----------eee-EEEeccCc
Q 004603 629 PDY-----SLRTFTG------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G----------SCA-GVFKVCNL 684 (743)
Q Consensus 629 ~~~-----~l~~l~~------h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t--g----------~~v-~~~~~~~~ 684 (743)
-.. .+..+.. ..-.|++++|+.++..+|++-. |-.|+++.-.. | ..+ ++|++|..
T Consensus 314 ~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN 392 (559)
T KOG1334|consen 314 IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN 392 (559)
T ss_pred hhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEeccccccCCCCCCCcchhhccchhhccccc
Confidence 321 1222222 2245899999988888886655 66789884332 2 122 33777743
Q ss_pred ------e-eeecCCCEEEEEecCCeEEEEecccc------------eEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 685 ------M-PIILKGCFILNSIFNCYLLLHRIFLN------------LLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 685 ------i-~~s~~g~~l~sgs~Dg~I~vh~~~v~------------~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+ -|-|...|+++|+.-|.|.||+.... +-++.+.+.--.|||+|.|--|+||..
T Consensus 393 ~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 393 SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 2 25588899999999999999986531 112222222458999999999999965
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=2.7e-08 Score=112.46 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEEEC--CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEC--CC
Q 004603 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT--EN 628 (743)
Q Consensus 555 ~~~V~siafspdg~~La-Sgs~Dg~V~IWd~--~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl--~~ 628 (743)
.+.+.+.+|+|||+.|+ +.+.|+...||.+ .++. ...+..|...+....|+|||+.|+..+. ++...+|.+ ..
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 34567899999998776 5677887777654 4443 4556666666778899999998876554 566667755 44
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecCC
Q 004603 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~Dg 701 (743)
+.. ..+..+.......+|+|+|..+++++..++ .|.+||+.+++....... .....|+|+|.+|+..+.++
T Consensus 318 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 318 GAA--QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred Cce--EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecC
Confidence 332 222222333456899999987765554333 699999998865433222 24467999999988877654
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.97 E-value=5e-09 Score=108.56 Aligned_cols=114 Identities=18% Similarity=0.368 Sum_probs=90.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEEec
Q 004603 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 560 siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~L-aSgs~Dg~VrvWDl~~~~~~l~~l~~ 638 (743)
-++|||+|++||+++.- .+.|-|.++.+....|.- -..|..+.|.-+..++ .....|+.|.+|++..++. ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 47899999999999855 788889887665443332 3567788898876655 4556789999999998775 445555
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeee
Q 004603 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (743)
Q Consensus 639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v 676 (743)
....+.+++|+|+|+++|.+...|-.|.||.+.+.++.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 66789999999999999999999999999999987654
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.2e-07 Score=107.41 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCCe
Q 004603 558 VESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW--DTENPDY 631 (743)
Q Consensus 558 V~siafspdg~~LaSg-s~Dg--~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvW--Dl~~~~~ 631 (743)
+.+++|+|||+.|+.. +.++ .|.+||+++++... +..+...+....|+|+++.|+.++. ++...|| |+.++.
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~- 322 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA- 322 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-
Confidence 4568999999987754 4444 48889998877654 4444556788999999998876665 4444555 666544
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecCCe
Q 004603 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNCY 702 (743)
Q Consensus 632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~Dg~ 702 (743)
...+..+...+.+.+|+|+|+.+++++..+ ..|.+||+.+++....... .....|+|||.+|+..+.++.
T Consensus 323 -~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 323 -PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred -eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence 334443444567789999998777666544 3588899988865422222 234679999999999888764
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.1e-07 Score=107.48 Aligned_cols=184 Identities=18% Similarity=0.114 Sum_probs=118.7
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEE-eCCC--eEEEE
Q 004603 551 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVW 624 (743)
Q Consensus 551 l~~H~~~V~siafspdg~~LaSgs~---Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSg-s~Dg--~VrvW 624 (743)
+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++... +....+.+..++|+|||+.|+.. +.++ .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 3456678999999999998886542 3568999998876433 22233445678999999988754 4454 58899
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEE--EECCCCeeeEEEe-c--cCceeeecCCCEEEEEec
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY--WSINNGSCAGVFK-V--CNLMPIILKGCFILNSIF 699 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Irv--WDl~tg~~v~~~~-~--~~~i~~s~~g~~l~sgs~ 699 (743)
|+.++.. ..+..+...+...+|+|+|..++++...++...| +|+.+++...... + .....++|+|.+|+..+.
T Consensus 273 d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 9987653 4444455667889999999877766655555444 4777665432221 1 134678999999887654
Q ss_pred C-C--eEEEEecccc----------eEEEEecCCCCEEEEEeCCCe---EEEeC
Q 004603 700 N-C--YLLLHRIFLN----------LLSVSEWCNPDEISTSSWKDS---CCSHR 737 (743)
Q Consensus 700 D-g--~I~vh~~~v~----------~l~v~~~~~~~~laSgs~DG~---V~iWd 737 (743)
+ + .|.+++.... .....+.+++..|+..+.++. +.+|+
T Consensus 351 ~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred cCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 3 2 3555543211 111233445777888887764 45554
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=1.6e-08 Score=106.07 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=111.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-cCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe--
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-- 631 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~-H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~-- 631 (743)
..+..++|++.-..+|++..|.+|++||-.. ++...++. -...|+|++|.|. +..|+.|+ .+-|.+|.......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence 3477899999877899999999999999765 44444432 2457999999995 55667766 45589998643211
Q ss_pred ---------e--EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE-e---ccCceeeecCCCEEEE
Q 004603 632 ---------S--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K---VCNLMPIILKGCFILN 696 (743)
Q Consensus 632 ---------~--l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~-~---~~~~i~~s~~g~~l~s 696 (743)
+ +....+| ..|+++.|.+||..++.++-.|..|+|||..++.++.-. + +.+-+.++|||.++++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1 2223355 679999999998866655556788999999999876544 2 2345779999999999
Q ss_pred EecCCeEEEE
Q 004603 697 SIFNCYLLLH 706 (743)
Q Consensus 697 gs~Dg~I~vh 706 (743)
++.|+..++|
T Consensus 256 At~davfrlw 265 (445)
T KOG2139|consen 256 ATCDAVFRLW 265 (445)
T ss_pred ecccceeeee
Confidence 9999999997
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.94 E-value=2e-07 Score=104.66 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=110.4
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeCCC--eEE
Q 004603 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (743)
Q Consensus 549 ~~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~Dg--~Vr 622 (743)
..+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+...+.+++|+|+++.|+ +.+.++ .|+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 3444566678999999999999887654 479999998876543 334556677899999998775 444444 588
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEec---cCceeeecCCCEEEEE
Q 004603 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNS 697 (743)
Q Consensus 623 vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sg 697 (743)
+||+.++. ...+..+...+....|+|+|..++++...++ .|.+||+.+++....... .....++++|.+++..
T Consensus 262 ~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 262 VMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEE
Confidence 89988754 3444445555667899999987776665444 588888887765433222 1346789999999988
Q ss_pred ecCC---eEEEEec
Q 004603 698 IFNC---YLLLHRI 708 (743)
Q Consensus 698 s~Dg---~I~vh~~ 708 (743)
+.++ .|.+++.
T Consensus 340 ~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 340 HREGGGFNIAVMDL 353 (417)
T ss_pred EccCCceEEEEEeC
Confidence 7765 5555554
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.3e-07 Score=107.31 Aligned_cols=146 Identities=13% Similarity=0.088 Sum_probs=100.4
Q ss_pred eeCCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CC--eEEEE
Q 004603 551 IPASTSKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVW 624 (743)
Q Consensus 551 l~~H~~~V~siafspdg~~La-Sgs~Dg~--V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg--~VrvW 624 (743)
+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.+++. ..+..+...+...+|+||++.|+..+. ++ .|++|
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence 344556688999999998765 5566655 77778887665 446666667788999999998877663 33 68888
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEec
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIF 699 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~ 699 (743)
|+..+. ...+..+...+....|+|+|+.++++.... ..|.+||+..+. ...+.. .....|+|+|.+|+..+.
T Consensus 320 d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 320 NADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEc
Confidence 887644 334443455677789999998777655433 368888986553 333332 244679999999877654
Q ss_pred C
Q 004603 700 N 700 (743)
Q Consensus 700 D 700 (743)
+
T Consensus 397 ~ 397 (435)
T PRK05137 397 T 397 (435)
T ss_pred c
Confidence 3
No 235
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=9.6e-09 Score=109.33 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=111.7
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW 582 (743)
.+..++++++..+....+++...... +........+......|..+..+.....+-.+++...+.+|
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 34457888888877776765544321 11111222222223334444444333344445566667777
Q ss_pred ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 583 d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D 662 (743)
....+.+ ..+-||-..+++|+|+||+.+|+|+..|..|||-........-..+-||+..|..++.-++ +.|.|++.|
T Consensus 138 s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sGD 214 (390)
T KOG3914|consen 138 SADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSGD 214 (390)
T ss_pred cccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCCC
Confidence 7766444 3456899999999999999999999999999998776543322344589999999999876 357799999
Q ss_pred CcEEEEECCCCeeeEEEec
Q 004603 663 SEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~ 681 (743)
++|++||+++|++++++..
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CcEEEEecccCCcccccch
Confidence 9999999999999877754
No 236
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.93 E-value=2.6e-08 Score=104.02 Aligned_cols=151 Identities=23% Similarity=0.364 Sum_probs=110.1
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-- 584 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~-- 584 (743)
+.|.+|=..+++.-+...++ -......+....|...|..+-|+-...++++.+.|+.+. |.+
T Consensus 81 ~~L~vg~~ngtvtefs~sed---------------fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e 144 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFALSED---------------FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE 144 (404)
T ss_pred eEEEEEEecceEEEEEhhhh---------------hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeec
Confidence 56677777777777644332 122334455556777777777776666677766665432 211
Q ss_pred ----------------------------------------CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603 585 ----------------------------------------ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 585 ----------------------------------------~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW 624 (743)
....++.++.+|.+.|++++|.|...+|++|..|..|.+|
T Consensus 145 ~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 145 SGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred cCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 1223456678999999999999999999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~ 674 (743)
|+--.+.....+.+|...|..+...+.-. .+++++.||.|.+||++..+
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEecccee
Confidence 99766666778889999999998877644 56699999999999997543
No 237
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.92 E-value=1.9e-09 Score=116.00 Aligned_cols=177 Identities=16% Similarity=0.186 Sum_probs=144.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
-+.+.|+.+|+.++.|+..|.|..+|..+++....+.. ...|.++.|-.+..+||++ ....++|||-. +.+ ++.++
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtE-lHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTE-LHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcE-Eeehh
Confidence 56788999999999999999999999999988777754 4568999998777777776 47889999954 343 77777
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----CceeeecCCCEEEEEecCCeEEEEec-----
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRI----- 708 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~----- 708 (743)
.| ..|..+.|-|. .++|++++..|.++.-|+.+|+.+..+... ..+.-.|....+-.|..+|+|.+|..
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 65 46899999998 579999999999999999999998877643 33667788888999999999999754
Q ss_pred ---------ccceEEEEecCCCCEEEEEeCCCeEEEeCCCccc
Q 004603 709 ---------FLNLLSVSEWCNPDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 709 ---------~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~~~ 742 (743)
.+..+++.. .+.+++|.|.|..|+|||-+.++
T Consensus 286 LvKiLcH~g~V~siAv~~--~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDR--GGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred HHHHHhcCCCcceEEECC--CCcEEeecccccceeEeeecccc
Confidence 344555544 48899999999999999988765
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=8.5e-08 Score=108.66 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=97.6
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCe--EEEEECCC
Q 004603 555 TSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRT--VRVWDTEN 628 (743)
Q Consensus 555 ~~~V~siafspdg~~La-Sgs~Dg--~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~--VrvWDl~~ 628 (743)
.+.+.+++|+|||+.|+ +.+.++ .|++||+.+++.. .+..|......++|+|+++.|+.++. ++. |.++|+.+
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34456889999998765 555555 5999999887654 45556666678999999998876663 554 66667766
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecC
Q 004603 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~D 700 (743)
+.. ..+..+......++|+|+|..++++...++ .|.+||+.+++......+ .....++++|.+|+..+.+
T Consensus 326 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 326 GSA--ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CCe--EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEec
Confidence 543 223223344557899999997776554433 699999988765422222 2346799999988776654
No 239
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.91 E-value=4.6e-07 Score=94.10 Aligned_cols=149 Identities=11% Similarity=0.140 Sum_probs=112.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEcccC--CCEEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 004603 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHT--QWITDVRFSPSLSRLAT-SSADRTVRVWDTENP 629 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~-t~~~i~~l~~H~--~~V~~vafsp~~~~LaS-gs~Dg~VrvWDl~~~ 629 (743)
...+|.+|.+.++ .|++.- +++|+||... +.+.++.++.-. ..+.+++-+-+..+||. |-.-|.|.|-|+...
T Consensus 93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 3467999999755 455554 5689999987 566666664332 33444433334445544 345799999999865
Q ss_pred Ce-eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEECCCCeeeEEEecc------CceeeecCCCEEEEEecCC
Q 004603 630 DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKVC------NLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 630 ~~-~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~-IrvWDl~tg~~v~~~~~~------~~i~~s~~g~~l~sgs~Dg 701 (743)
.. +-..+..|.+.|.+++.+-+|. ++||+|..|+ |||||..+|+.+.+++.. -.++|+|++.||++.|+.|
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 53 3467889999999999999986 8889999887 899999999999998854 2378999999999999999
Q ss_pred eEEEE
Q 004603 702 YLLLH 706 (743)
Q Consensus 702 ~I~vh 706 (743)
++.|.
T Consensus 249 TlHiF 253 (346)
T KOG2111|consen 249 TLHIF 253 (346)
T ss_pred eEEEE
Confidence 99994
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=6.4e-07 Score=101.32 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=104.4
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeCCC--eEE
Q 004603 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (743)
Q Consensus 549 ~~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~Dg--~Vr 622 (743)
..+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|+|+.|+ +.+.++ .|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3445667789999999999988776644 358899998876543 333344566789999998876 454455 688
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEe-c--cCceeeecCCCEEEEE
Q 004603 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK-V--CNLMPIILKGCFILNS 697 (743)
Q Consensus 623 vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~-~--~~~i~~s~~g~~l~sg 697 (743)
+||+.++. ...+..+...+....|+|+|..++++...++ .|++||+.+++...... + .....++|+|.+|+..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998765 3445556666777899999998877765554 57778888776543222 2 1235689999998876
Q ss_pred ec
Q 004603 698 IF 699 (743)
Q Consensus 698 s~ 699 (743)
+.
T Consensus 349 ~~ 350 (430)
T PRK00178 349 HR 350 (430)
T ss_pred Ec
Confidence 64
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=4.6e-08 Score=107.79 Aligned_cols=157 Identities=15% Similarity=0.231 Sum_probs=122.8
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc------ccCC-----CEEEEEEcCCCCEEEEEe
Q 004603 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQ-----WITDVRFSPSLSRLATSS 616 (743)
Q Consensus 548 ~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~------~H~~-----~V~~vafsp~~~~LaSgs 616 (743)
+..+....+.|++|..++...+|++|+.||+|-.||.+....+.++. .|.+ .|+++.|+.+|-.+++|.
T Consensus 168 L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 168 LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec
Confidence 33444556789999999988899999999999999998765555543 2333 499999999999999999
Q ss_pred CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCC-CcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCC
Q 004603 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGC 692 (743)
Q Consensus 617 ~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g-~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~ 692 (743)
.+|.|.|||+++....+..-.+..-+|..++|.+.+ ...++|+. ...++|||-.+|+....+... +.+|+.|++.
T Consensus 248 s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSG 326 (703)
T ss_pred cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCc
Confidence 999999999999776555555566789999997763 23565655 568999999999987776643 4578889999
Q ss_pred EEEEEecCCeEEE
Q 004603 693 FILNSIFNCYLLL 705 (743)
Q Consensus 693 ~l~sgs~Dg~I~v 705 (743)
.++++-.+..+..
T Consensus 327 m~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 327 MFFTANESSKMHT 339 (703)
T ss_pred eEEEecCCCccee
Confidence 9999887765544
No 242
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=4.5e-09 Score=114.52 Aligned_cols=163 Identities=15% Similarity=0.239 Sum_probs=122.2
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC
Q 004603 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 547 ~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t-------~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg 619 (743)
....+.||+.+|..++--.+.+.+++++.|++|++|.++. ..+..++..|+..|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4567889999999998877888999999999999999863 33667888999999999998887777765 89
Q ss_pred eEEEEECCCCCeeEEEEe-cCCCCeEEEEEecC--CCcEEEEEeCCCcEEEEECCCCeeeEEEecc---------Cceee
Q 004603 620 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---------NLMPI 687 (743)
Q Consensus 620 ~VrvWDl~~~~~~l~~l~-~h~~~V~sl~fsp~--g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---------~~i~~ 687 (743)
-|++||.-.++....... ...+.+..+..-++ ...+++.|+...+|+++|.+..+.+..++.. .++++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999866543211111 12233333433333 3334555688999999999999888777753 33678
Q ss_pred ecCCCEEEEEecCCeEEEEecccc
Q 004603 688 ILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 688 s~~g~~l~sgs~Dg~I~vh~~~v~ 711 (743)
.+.|++++.+-.+|.|.+-+....
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG 908 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC
Confidence 899999999999998888665543
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.77 E-value=8.1e-08 Score=100.32 Aligned_cols=153 Identities=19% Similarity=0.297 Sum_probs=112.4
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEEc-----ccCCCEEEEEEcCC-CCEEEEEeCCCeEE
Q 004603 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE-----EHTQWITDVRFSPS-LSRLATSSADRTVR 622 (743)
Q Consensus 552 ~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~---i~~l~-----~H~~~V~~vafsp~-~~~LaSgs~Dg~Vr 622 (743)
.+|+--|.+|.++.|+..++++. |=.|.+|+++-... +.-++ .-+..|++..|||. .+.|+-++..|+||
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 36999999999999999998875 77899999863221 11222 23457899999995 77888888999999
Q ss_pred EEECCCCCeeEE---------------EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC-CCeeeEEEeccC---
Q 004603 623 VWDTENPDYSLR---------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKVCN--- 683 (743)
Q Consensus 623 vWDl~~~~~~l~---------------~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~-tg~~v~~~~~~~--- 683 (743)
+-|+|....|.. .|.+--+.|.++.|+++|+++| +-+. -+|++||+. ..+++.++..|.
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 999985433211 1222335688999999998666 4432 589999994 456777776541
Q ss_pred ----------------ceeeecCCCEEEEEecCCeEEEEe
Q 004603 684 ----------------LMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 684 ----------------~i~~s~~g~~l~sgs~Dg~I~vh~ 707 (743)
.++++-++.++++|+....+++.+
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 155667777999999999999976
No 244
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.77 E-value=2.9e-08 Score=100.26 Aligned_cols=151 Identities=11% Similarity=0.226 Sum_probs=98.1
Q ss_pred cEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEE
Q 004603 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (743)
Q Consensus 578 ~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL 656 (743)
..++|+++-.+.+..-.-....|++++-+|. .+.+++|+.||.|-+||.++...++..++.|+..++-|-|||..+.-|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 3455665432222111112334999999995 567788889999999999998888889999999999999999987777
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEE------ecccceEEEEecCCCCEEEEEeCC
Q 004603 657 CSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLH------RIFLNLLSVSEWCNPDEISTSSWK 730 (743)
Q Consensus 657 ~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh------~~~v~~l~v~~~~~~~~laSgs~D 730 (743)
++|++||.+..||..+. .+..-... +....||-.--....|.+- ..++..+.+. +..+++|+.-
T Consensus 240 ft~sedGslw~wdas~~-~l~i~~~~-----s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~----g~~lVcgtd~ 309 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDASTT-FLSISNQA-----SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL----GPCLVCGTDA 309 (319)
T ss_pred eEecCCCcEEEEcCCCc-eEEecCcc-----ccccccccCCcccceEeeeccccccceeeeeeecc----CceEEecccc
Confidence 89999999999998752 22110000 0111111111111223331 2233444443 5689999999
Q ss_pred CeEEEeCC
Q 004603 731 DSCCSHRE 738 (743)
Q Consensus 731 G~V~iWd~ 738 (743)
+.|++++.
T Consensus 310 eaIyl~~~ 317 (319)
T KOG4714|consen 310 EAIYLTRH 317 (319)
T ss_pred ceEEEecc
Confidence 99998874
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.76 E-value=9.3e-07 Score=99.19 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=98.5
Q ss_pred CCCCCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEEC
Q 004603 553 ASTSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDT 626 (743)
Q Consensus 553 ~H~~~V~siafspdg~~La-Sgs~Dg--~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg--~VrvWDl 626 (743)
.+.+.+.+++|+|||+.|+ +.+.++ .|++||+.++... .+..+...+...+|+|+++.|+.++. ++ .|.+||+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 3455677899999998765 444444 5888898876543 44455555667899999998876654 33 5778888
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecCC
Q 004603 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 627 ~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg---~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~Dg 701 (743)
.++. ...+..+...+..+.|+|+|..++++.. ++ .|.+||+.++........ .....++++|.+|+..+.++
T Consensus 310 ~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~-~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 310 DGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHR-EGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCC--EEEeecCCCCccCeEECCCCCEEEEEEc-cCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 7654 3344445566788999999986665544 43 788999987654322211 23357899999988877654
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.3e-06 Score=97.27 Aligned_cols=137 Identities=16% Similarity=0.210 Sum_probs=111.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe
Q 004603 566 DGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~--~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V 643 (743)
+...++-|...|.|.+|++..++....+. .|.+.|.++.++-+...|.|++.|+.|.+|+...... ++.+.+-...+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~ 147 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLV 147 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCcc
Confidence 34468888889999999999998887775 6899999999998888999999999999999988554 78888888899
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecC-----CCEEEEEe-cCCeEEEE
Q 004603 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILK-----GCFILNSI-FNCYLLLH 706 (743)
Q Consensus 644 ~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~-----g~~l~sgs-~Dg~I~vh 706 (743)
.+++.+||+. ++++++ +.|++||+++++.+..|.+|.. +.|... |.|++++. .+..+.+|
T Consensus 148 ~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 148 SSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 9999999977 555666 6899999999999999999854 344443 67766653 34444444
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.75 E-value=9.8e-08 Score=98.02 Aligned_cols=142 Identities=23% Similarity=0.229 Sum_probs=104.7
Q ss_pred eeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEE-EcccCCCEEEEEEcC-CCCEEEEEeCCCe
Q 004603 545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKST-LEEHTQWITDVRFSP-SLSRLATSSADRT 620 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-~~~i~~-l~~H~~~V~~vafsp-~~~~LaSgs~Dg~ 620 (743)
...+...++|.-.+..++|+. +.+++++|++|+.+..||++. ++.+.. .+.|+..|.+|.-+| .+.+|+||+.|..
T Consensus 155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence 344557889999999999986 667999999999999999983 333332 456899999998877 5889999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEECCCCe-----eeEEEeccCceeee
Q 004603 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGS-----CAGVFKVCNLMPII 688 (743)
Q Consensus 621 VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~-lL~Sgs~Dg~IrvWDl~tg~-----~v~~~~~~~~i~~s 688 (743)
|++||.|+-..++..-. -.+.|+.++++|...+ +|++|-..| .+|-++..+. ....++.|..+++-
T Consensus 235 i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG 306 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYG 306 (339)
T ss_pred eeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeec
Confidence 99999997665554332 3478999999997543 455666555 7787776543 22334455554443
No 248
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.75 E-value=8.5e-07 Score=92.17 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=74.0
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEEcc--cCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 548 ~~~l~~H~~~V~siafspdg~~LaSgs~Dg~-V~IWd~~t~~~i~~l~~--H~~~V~~vafsp~~~~LaSgs~Dg~VrvW 624 (743)
...+.+|.+.|.|++.+-+|.+|||||..|+ |||||..++..+..++. ..+.|+|++|+|+..+|+++|..|+|+||
T Consensus 174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence 3678899999999999999999999999998 79999999999888863 34679999999999999999999999999
Q ss_pred ECCCC
Q 004603 625 DTENP 629 (743)
Q Consensus 625 Dl~~~ 629 (743)
.++..
T Consensus 254 ~l~~~ 258 (346)
T KOG2111|consen 254 SLRDT 258 (346)
T ss_pred EeecC
Confidence 98753
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.74 E-value=2.5e-05 Score=85.88 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=126.8
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEEE---Ec----------ccCCCEEEEEEcCC
Q 004603 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKST---LE----------EHTQWITDVRFSPS 608 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~-Dg~V~IWd~~t-~~~i~~---l~----------~H~~~V~~vafsp~ 608 (743)
.++.+............|+++|++++|+++.. ++.|.++++.. +..... +. .......++.|+|+
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 44555555544445678999999999999985 88999999986 443322 21 12345789999999
Q ss_pred CCEEEEEeC-CCeEEEEECCCCCeeE---EEE-ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC--CCee--eEEE
Q 004603 609 LSRLATSSA-DRTVRVWDTENPDYSL---RTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSC--AGVF 679 (743)
Q Consensus 609 ~~~LaSgs~-Dg~VrvWDl~~~~~~l---~~l-~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~--tg~~--v~~~ 679 (743)
+++++++.. ...|++|++......+ ..+ .........+.|+|+++++++.+-.+++|.+|++. ++.. +..+
T Consensus 155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 998877653 5689999997755212 222 23446688999999999999999999999999998 4432 2222
Q ss_pred ec----------cCceeeecCCCEEEEEe-cCCeEEEEecc-----c-----------ceEEEEecCCCCEEEEEe-CCC
Q 004603 680 KV----------CNLMPIILKGCFILNSI-FNCYLLLHRIF-----L-----------NLLSVSEWCNPDEISTSS-WKD 731 (743)
Q Consensus 680 ~~----------~~~i~~s~~g~~l~sgs-~Dg~I~vh~~~-----v-----------~~l~v~~~~~~~~laSgs-~DG 731 (743)
.. ...+.++|+|++|++.. ..+.|.+.+.. . ....+..+.++.+|+++. .++
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 21 12377999999988865 45566665541 1 122233344567777666 666
Q ss_pred eEEEeC
Q 004603 732 SCCSHR 737 (743)
Q Consensus 732 ~V~iWd 737 (743)
.|.+|+
T Consensus 315 ~v~vf~ 320 (345)
T PF10282_consen 315 TVSVFD 320 (345)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888874
No 250
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.73 E-value=2.4e-06 Score=94.62 Aligned_cols=178 Identities=17% Similarity=0.137 Sum_probs=117.5
Q ss_pred EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004603 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (743)
Q Consensus 509 l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~ 588 (743)
+++-..++.|.+.+ +.+.+.+..+......-..+.|+|||+++++++.|+.|.++|+.+.+
T Consensus 9 ~V~~~~~~~v~viD-------------------~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~ 69 (369)
T PF02239_consen 9 YVVERGSGSVAVID-------------------GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK 69 (369)
T ss_dssp EEEEGGGTEEEEEE-------------------TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS
T ss_pred EEEecCCCEEEEEE-------------------CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc
Confidence 35555678888873 33445667776554434457899999999999999999999999999
Q ss_pred EEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeEEEEec-------CCCCeEEEEEecCCCcEEEEEe
Q 004603 589 VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 589 ~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~~~l~~l~~-------h~~~V~sl~fsp~g~~lL~Sgs 660 (743)
.+.++.... ...++++++||+++++++ .++.|.++|.++.+. +..+.. ..+.+.+|..+|..+.++++--
T Consensus 70 ~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 70 VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 999887644 467899999999988776 599999999998664 554432 2456888888888776666666
Q ss_pred CCCcEEEEECCCCeee--EEEecc---CceeeecCCCEEEEEe-cCCeEEEEe
Q 004603 661 NNSEIRYWSINNGSCA--GVFKVC---NLMPIILKGCFILNSI-FNCYLLLHR 707 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~~v--~~~~~~---~~i~~s~~g~~l~sgs-~Dg~I~vh~ 707 (743)
+.+.|.+-|....+.+ ..+... ....++++++|++.+. .+..|.+.+
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 6688888887765433 233322 2367889999987753 344555544
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.72 E-value=9.3e-06 Score=89.99 Aligned_cols=155 Identities=14% Similarity=0.160 Sum_probs=108.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs-~Dg~V~IWd~ 584 (743)
++++...+.|+.|.+++.... +.+..++.... ..++++++||+++++++ .++.|.|+|.
T Consensus 48 gr~~yv~~rdg~vsviD~~~~-------------------~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATG-------------------KVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSS-------------------SEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCcc-------------------cEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEecc
Confidence 367777788999999955433 45555555443 67899999999988776 5889999999
Q ss_pred CCCeEEEEEccc-------CCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEE
Q 004603 585 ESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (743)
Q Consensus 585 ~t~~~i~~l~~H-------~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL 656 (743)
++.+.+..+... ..++..|..+|....++..-. -+.|.+.|......................|+|++++++
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 999998877532 346778888888775655555 588888898776544444444566788999999999988
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEe
Q 004603 657 CSCDNNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 657 ~Sgs~Dg~IrvWDl~tg~~v~~~~ 680 (743)
++...+..|-++|..+++.+..+.
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ecccccceeEEEeeccceEEEEee
Confidence 888888899999999998877664
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=1.4e-06 Score=99.23 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=103.6
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEE-EeCCCe--EEE
Q 004603 550 LIPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV 623 (743)
Q Consensus 550 ~l~~H~~~V~siafspdg~~LaSgs~D-g--~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaS-gs~Dg~--Vrv 623 (743)
.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++... +....+.....+|+|+++.|+. .+.++. |.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344556678999999999988876543 3 58888988776533 2222334457899999997754 566665 777
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEECCCCeeeEE-Eecc--CceeeecCCCEEEEEe
Q 004603 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGV-FKVC--NLMPIILKGCFILNSI 698 (743)
Q Consensus 624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~--IrvWDl~tg~~v~~-~~~~--~~i~~s~~g~~l~sgs 698 (743)
||+.++. +..+..+...+...+|+|+|..+++++..++. |.++|+.+++.... +.+. ....++|+|.+|+..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 34555565667789999999988877765554 66678877765432 2222 2357899999987765
Q ss_pred c-CCeEEE
Q 004603 699 F-NCYLLL 705 (743)
Q Consensus 699 ~-Dg~I~v 705 (743)
. ++...+
T Consensus 369 ~~~g~~~I 376 (448)
T PRK04792 369 RTNGKFNI 376 (448)
T ss_pred ecCCceEE
Confidence 4 343344
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=7.4e-07 Score=98.52 Aligned_cols=174 Identities=12% Similarity=0.058 Sum_probs=118.7
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe-
Q 004603 560 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 637 (743)
Q Consensus 560 siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~- 637 (743)
+++++. ...+++. +....|+-++++.|..+.-|....+.|++|..++...+|++|+.||.|-+||.++... +.++.
T Consensus 138 Dm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~ 215 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDA 215 (703)
T ss_pred cccccCCCccEEEe-ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-heeeec
Confidence 455553 3444444 4455688889999999999988889999999999988999999999999999998654 23222
Q ss_pred -----cCCC-----CeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc-----eeeecC-CCEEEEEecCC
Q 004603 638 -----GHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILK-GCFILNSIFNC 701 (743)
Q Consensus 638 -----~h~~-----~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~-g~~l~sgs~Dg 701 (743)
.|.. .|+++.|..+|- -++.|..+|.|.|||+++.+++..-..... +.|.+. ..-.+......
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~ 294 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR 294 (703)
T ss_pred ccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchH
Confidence 2222 499999998754 567899999999999999887654443222 223222 22233333445
Q ss_pred eEEEEecccc-----------eEEEEecCCCCEEEEEeCCCeEEEe
Q 004603 702 YLLLHRIFLN-----------LLSVSEWCNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 702 ~I~vh~~~v~-----------~l~v~~~~~~~~laSgs~DG~V~iW 736 (743)
.++||+.... .-.+|..++.++++++-.++.+..|
T Consensus 295 ~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred HhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6777764321 2223444557888888888876655
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=1.4e-06 Score=98.53 Aligned_cols=144 Identities=18% Similarity=0.121 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC---CeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEE-
Q 004603 556 SKVESCHFSPDGKLLATGGH-----DKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWD- 625 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~-----Dg~V~IWd~~t---~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWD- 625 (743)
+.....+|+|||+.|+..+. |..+.+|++.. ++......++...+...+|+|||+.|+..+ .+|...+|.
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 33556899999998876553 22344577664 233333433334456789999999877655 467655554
Q ss_pred -CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEec
Q 004603 626 -TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIF 699 (743)
Q Consensus 626 -l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~ 699 (743)
+.........+..+...+....|+|+|+.+++++..+ ..|.+||+.++++...... .....++|+|.+|+....
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC
Confidence 4322222344554556678899999999777666544 3699999998876543322 234678999998875443
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.70 E-value=3.8e-07 Score=101.42 Aligned_cols=146 Identities=21% Similarity=0.247 Sum_probs=122.6
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..++-|..-|.|.++....+ ..+....-..|-+.|.++.++.+-..|.+++.|+.|..|+...
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g-----------------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGG-----------------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred eEEEeecCCccEEEEEecCC-----------------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 56677777777777744333 2222333357999999999999999999999999999999999
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC-----CCcEEEEEeC
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-----KEDLLCSCDN 661 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~-----g~~lL~Sgs~ 661 (743)
+..++.+.+....+.+++++||+..+++++ +.|++||+.+++. +.+|.||.+.|.++.|.-. |.++|.+...
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence 999999999999999999999999999885 7899999999665 9999999999999999877 7788877777
Q ss_pred CCcEEEEECCC
Q 004603 662 NSEIRYWSINN 672 (743)
Q Consensus 662 Dg~IrvWDl~t 672 (743)
+..|.+|-++.
T Consensus 211 ~r~i~~w~v~~ 221 (541)
T KOG4547|consen 211 ERGITVWVVEK 221 (541)
T ss_pred ccceeEEEEEc
Confidence 88899997764
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=2.6e-06 Score=96.41 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=95.0
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004603 556 SKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENP 629 (743)
Q Consensus 556 ~~V~siafspdg~~La-Sgs~Dg--~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg--~VrvWDl~~~ 629 (743)
+.+.+.+|+|||+.|+ +.+.++ .|.+||+.+++.. .+..+...+....|+|+++.|+..+. ++ .|.++|+.++
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3455789999999776 444555 5888899887654 45556666777899999988765553 33 5777788766
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecC
Q 004603 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~D 700 (743)
.....++.+ .......|+|+|..++++...++ .|.+||+.+++....... .....++|+|.+++..+.+
T Consensus 322 ~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 322 RAERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CEEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec
Confidence 532222222 23446789999997776665444 588899988765332221 2335789999998876654
No 257
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.66 E-value=8.8e-08 Score=107.94 Aligned_cols=127 Identities=20% Similarity=0.319 Sum_probs=104.6
Q ss_pred eEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603 547 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 547 ~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~-~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW 624 (743)
....+.+|+..|+.+-|+| ....+++++.|-.|..||+++. .++..+..-....+.|+|+-....+...+....|+||
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 3345679999999999999 4568999999999999999874 3455555555567889998854555555678889999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg 673 (743)
|++.+..++.++++|...|++++|..-....+.+++.|++|++||....
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 9999999999999999999999998776666779999999999998754
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.57 E-value=3.4e-05 Score=96.17 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=123.7
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEEccc-----------------CCCEEEEEEcC-CCCEEEEEe
Q 004603 556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEH-----------------TQWITDVRFSP-SLSRLATSS 616 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs-~Dg~V~IWd~~t~~~i~~l~~H-----------------~~~V~~vafsp-~~~~LaSgs 616 (743)
.....|+++++++.|+++. ..+.|+++|+.++. +.++.+- -..-+.|+|+| ++.++++..
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 3467899999888666654 45679999987754 3444220 01236799999 566677777
Q ss_pred CCCeEEEEECCCCCeeEEEEecC---------------CCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE--
Q 004603 617 ADRTVRVWDTENPDYSLRTFTGH---------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-- 679 (743)
Q Consensus 617 ~Dg~VrvWDl~~~~~~l~~l~~h---------------~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~-- 679 (743)
.++.|++||..++.. .++.+. -.....|+|+|++..++++-+.++.|++||+.++......
T Consensus 703 ~~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 703 GQHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred CCCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 899999999987543 233211 1235679999999888888888899999999876532111
Q ss_pred -----------------------eccCceeeecCCCEEEEEecCCeEEEEecccceE-----------------------
Q 004603 680 -----------------------KVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLL----------------------- 713 (743)
Q Consensus 680 -----------------------~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l----------------------- 713 (743)
.....++++++|..+++-+.+++|++++.....+
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 1123577889999888889999999987532211
Q ss_pred --EEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 714 --SVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 714 --~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
.+..+.++..+++-+.+++|++||-
T Consensus 861 P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 861 PAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred ceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 1233334567777788899999975
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=5.2e-06 Score=94.57 Aligned_cols=140 Identities=17% Similarity=0.185 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCEEEE-EeCCCc--EEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCCe
Q 004603 558 VESCHFSPDGKLLAT-GGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENPDY 631 (743)
Q Consensus 558 V~siafspdg~~LaS-gs~Dg~--V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg--~VrvWDl~~~~~ 631 (743)
....+|+|||+.|+. .+.++. |.+||+.+++.. .+..+...+...+|+|+++.|+..+. ++ .|.++|+.++..
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 446899999997764 566665 777788876653 45556666778899999998765553 44 466667776553
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecC
Q 004603 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~--IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~D 700 (743)
...++.+ ......+|+|+|+.++++...++. |.++|+.+++....... .....++|+|.+|+..+.+
T Consensus 343 ~~Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 343 SRLTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred EEEecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEec
Confidence 2222332 234567999999987776665554 55578887764322211 1234689999988766544
No 260
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.53 E-value=1.1e-06 Score=90.78 Aligned_cols=215 Identities=15% Similarity=0.253 Sum_probs=142.0
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC------------CCCeEEEEEcCCC--CEEEE
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDG--KLLAT 572 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H------------~~~V~siafspdg--~~LaS 572 (743)
.++++|...|.|.+|.-.... +-..+.+..+.+| ..+|..|.|..++ ..++.
T Consensus 39 ~YlatGDkgGRVvlfer~~s~--------------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 39 LYLATGDKGGRVVLFEREKSY--------------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ceEeecCCCceEEEeeccccc--------------ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 799999999999999332221 1112222333333 2358888887643 35667
Q ss_pred EeCCCcEEEEECCCCe------------------------------------------EEEEE-cccCCCEEEEEEcCCC
Q 004603 573 GGHDKKAVLWCTESFT------------------------------------------VKSTL-EEHTQWITDVRFSPSL 609 (743)
Q Consensus 573 gs~Dg~V~IWd~~t~~------------------------------------------~i~~l-~~H~~~V~~vafsp~~ 609 (743)
.+.|++|++|.+.... +.+.. ..|...|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999764210 00111 3577788999999987
Q ss_pred CEEEEEeCCCeEEEEECCCCCee--EEEEecCC-----CCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe-ee-----
Q 004603 610 SRLATSSADRTVRVWDTENPDYS--LRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CA----- 676 (743)
Q Consensus 610 ~~LaSgs~Dg~VrvWDl~~~~~~--l~~l~~h~-----~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~-~v----- 676 (743)
..++++ .|-.|.+|++.....+ +..++.|. ..|++..|||....+|...+..|+|++-|+|... |.
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777776 4889999998754433 33444454 4588999999877777777779999999999432 11
Q ss_pred E--EEec------------cCceeeecCCCEEEEEecCCeEEEEeccc----------------------------ceEE
Q 004603 677 G--VFKV------------CNLMPIILKGCFILNSIFNCYLLLHRIFL----------------------------NLLS 714 (743)
Q Consensus 677 ~--~~~~------------~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v----------------------------~~l~ 714 (743)
. .+.+ ...+.|++.|+|+++...- +|++|+... ..+.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 0 0111 1336788999999988765 788887543 1234
Q ss_pred EEecCCCCEEEEEeCCCeEEEeC
Q 004603 715 VSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 715 v~~~~~~~~laSgs~DG~V~iWd 737 (743)
+.+.++...+.+|++.....+|-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCCcccccccccccceeeec
Confidence 45555667788888877766664
No 261
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.51 E-value=1e-07 Score=64.00 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhcC
Q 004603 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (743)
Q Consensus 10 ~~l~~yiy~yl~k~~~~~~A~~~~~e~ 36 (743)
+.||.+|||||+++||.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999985
No 262
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.49 E-value=1.2e-06 Score=91.15 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=121.7
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeE
Q 004603 556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL 633 (743)
Q Consensus 556 ~~V~siafspdg~~La-Sgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~-~LaSgs~Dg~VrvWDl~~~~~~l 633 (743)
++|.-|.|..|..+++ .+..|+.|.+|++...+--..+.+..+.+.+++|+|+|+ .|.+...|-.|.||.+.+.+.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-- 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-- 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--
Confidence 4577788888776554 456788999999998888888888889999999999995 456777899999999998654
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEECCCCeeeEEEec----cCceeeecCCCEEEEEec--CCeEEE
Q 004603 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIF--NCYLLL 705 (743)
Q Consensus 634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~--IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~l~sgs~--Dg~I~v 705 (743)
..+......+..++|+|+|.+..+..-.|.. |.|..-.....++.++. .+.+.++|||+++++-.. +-.|..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 2233234456889999999854433333331 11111112223333432 245789999999888643 444333
Q ss_pred --EecccceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 706 --HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 706 --h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
+...+....|++. +.+++.|++|+.+++-+
T Consensus 207 Ye~~lG~k~v~wsP~--~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPC--NQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eeeccceeEEEeccc--cceEEeeccchhhhhhc
Confidence 3344555566554 78999999999988743
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=5.9e-06 Score=93.47 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEE--CCC-CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCC
Q 004603 556 SKVESCHFSPDGKLLATGG-HDKKAVLWC--TES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN 628 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs-~Dg~V~IWd--~~t-~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~D---g~VrvWDl~~ 628 (743)
+.+...+|+|||+.|+..+ .++...||. ++. +.....+..+...+...+|+|||+.|+..+.+ ..|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3456789999999777665 466656664 432 23344455555677889999999988766543 4699999988
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCCCeeeEEE
Q 004603 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVF 679 (743)
Q Consensus 629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~tg~~v~~~ 679 (743)
+.. ..+......+.+..|+|+|..++++...+ ..|.+||+..++.....
T Consensus 361 g~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 361 GRD--YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCe--EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 664 33433344577899999999877666533 46888899877654433
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1.7e-06 Score=94.86 Aligned_cols=217 Identities=14% Similarity=0.101 Sum_probs=141.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.+-..+++.|++|++|......++. .+..+-.++..|+.+|.++.|-.+.++++++ |+.|.+||.-
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPF 812 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEI------------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPF 812 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCcc------------ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccc
Confidence 3566789999999999665543222 1223456778999999999999998888776 8899999987
Q ss_pred CCeEEEEEc-----ccCCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEE-----ecCCCCeEEEEEecCCCc
Q 004603 586 SFTVKSTLE-----EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKED 654 (743)
Q Consensus 586 t~~~i~~l~-----~H~~~V~~vafsp~~~~L-aSgs~Dg~VrvWDl~~~~~~l~~l-----~~h~~~V~sl~fsp~g~~ 654 (743)
-+.++..+. +..+.|.|+. +-+...+ +-|+...+|+++|.+.... +..+ .+....+.+++..+.|.+
T Consensus 813 igr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kVcna~~Pna~~R~iaVa~~GN~ 890 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEW-TCELKVCNAPGPNALTRAIAVADKGNK 890 (1034)
T ss_pred ccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccc-eeeEEeccCCCCchheeEEEeccCcch
Confidence 666554221 2223455543 2133444 4446799999999998654 2322 244567889999999875
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEeccCc--ee-eecCCCEEEEEecCCeEEE-EecccceEEEEecCC----------
Q 004603 655 LLCSCDNNSEIRYWSINNGSCAGVFKVCNL--MP-IILKGCFILNSIFNCYLLL-HRIFLNLLSVSEWCN---------- 720 (743)
Q Consensus 655 lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~--i~-~s~~g~~l~sgs~Dg~I~v-h~~~v~~l~v~~~~~---------- 720 (743)
+. .+-..|+|.+.|.++|+.+..++...+ +. ..|...+++....|.++.+ |.......-....++
T Consensus 891 lA-a~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsv 969 (1034)
T KOG4190|consen 891 LA-AALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSV 969 (1034)
T ss_pred hh-HHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhcc
Confidence 54 666689999999999998887775433 11 2255566777777777777 543332222211110
Q ss_pred CCEEEEEeCCCeEEEeCCC
Q 004603 721 PDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 721 ~~~laSgs~DG~V~iWd~~ 739 (743)
+..+++......+.+|.+.
T Consensus 970 gpSLV~a~~Gn~lgVYad~ 988 (1034)
T KOG4190|consen 970 GPSLVTAQNGNILGVYADS 988 (1034)
T ss_pred CceeEEeccCcEEEEEecc
Confidence 2246666666677777543
No 265
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=3.1e-07 Score=96.18 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=99.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 004603 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~-----~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~ 627 (743)
.++.|.++.|...+++++.|+..|.|.++|++.. .+...+ -|...|+++..-. ++.+|++++.+|+|++||.|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 3456899999998999999999999999999863 344444 4888999987755 67889999999999999998
Q ss_pred CCCe--eEEEEecCCCCeEEEEE--ecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc
Q 004603 628 NPDY--SLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 628 ~~~~--~l~~l~~h~~~V~sl~f--sp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
..++ .+..+.||...-.-+-+ ++.. .++++++.|...|||.++.|..+.+++..
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6432 37888888765444444 3443 36668999999999999999988877654
No 266
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=3.8e-07 Score=95.51 Aligned_cols=145 Identities=16% Similarity=0.205 Sum_probs=111.1
Q ss_pred EEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----CeeE
Q 004603 560 SCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSL 633 (743)
Q Consensus 560 siafsp--dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~----~~~l 633 (743)
.|+|+- .|-. ++.+.+-.|-+-|++++-. ..|. .++.|.++.|+-.+++++.|+..|.|.++|+|.. ..+.
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 346653 2334 4555677788889887543 2343 5677999999988999999999999999999976 4555
Q ss_pred EEEecCCCCeEEEEEec-CCCcEEEEEeCCCcEEEEECCCCee---eEEEeccCc------eeeecCCCEEEEEecCCeE
Q 004603 634 RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSC---AGVFKVCNL------MPIILKGCFILNSIFNCYL 703 (743)
Q Consensus 634 ~~l~~h~~~V~sl~fsp-~g~~lL~Sgs~Dg~IrvWDl~tg~~---v~~~~~~~~------i~~s~~g~~l~sgs~Dg~I 703 (743)
..+. |.+.|+++..-. ++. .|.+.+-+|+|++||+|.-+| +..+.+|.. +-+.+...++++++.|+..
T Consensus 293 ~rly-h~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 293 QRLY-HDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred EEEE-cCcchhhhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 5555 889999987665 344 555777799999999998777 889998843 3355778899999999999
Q ss_pred EEEecc
Q 004603 704 LLHRIF 709 (743)
Q Consensus 704 ~vh~~~ 709 (743)
+||...
T Consensus 371 RiWsl~ 376 (425)
T KOG2695|consen 371 RIWSLD 376 (425)
T ss_pred EEEecc
Confidence 999876
No 267
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.42 E-value=0.0003 Score=77.40 Aligned_cols=153 Identities=14% Similarity=0.210 Sum_probs=101.8
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe--E--EEEEc-ccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECC-
Q 004603 556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFT--V--KSTLE-EHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE- 627 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs-~Dg~V~IWd~~t~~--~--i~~l~-~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~- 627 (743)
....++.|+|++++|++.. ....|.+|+++... . ...+. .....-..++|+|++++++... .+++|.+|++.
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 4578999999999887764 23479999987644 2 22222 2345678999999999886555 58899999998
Q ss_pred -CCCe-eEEEEec----C--CCCeEEEEEecCCCcEEEEEeCCCcEEEEECC--CCe--eeEEEec----cCceeeecCC
Q 004603 628 -NPDY-SLRTFTG----H--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGS--CAGVFKV----CNLMPIILKG 691 (743)
Q Consensus 628 -~~~~-~l~~l~~----h--~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~--tg~--~v~~~~~----~~~i~~s~~g 691 (743)
++.. .+..... . ......|+++|+|++++++.-.+..|.+|+++ +++ .+..+.. ...+.++++|
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG 303 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence 3221 1112211 1 12578999999999999998888999999994 333 3333332 2457889999
Q ss_pred CEEEEEe-cCCeEEEEec
Q 004603 692 CFILNSI-FNCYLLLHRI 708 (743)
Q Consensus 692 ~~l~sgs-~Dg~I~vh~~ 708 (743)
++|+++. .++.|.+++.
T Consensus 304 ~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 304 RYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp SEEEEEETTTTEEEEEEE
T ss_pred CEEEEEecCCCeEEEEEE
Confidence 9999886 4557777544
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.40 E-value=5.6e-05 Score=77.21 Aligned_cols=125 Identities=15% Similarity=0.098 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEE-EEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t--~~~i~-~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~ 634 (743)
+.++++++|++++++.++...|..|.++. ...+. .....++.=.+..|+.....+|++..||++.|||+|....+..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 78999999999999999999999998865 23333 2233345557889999889999999999999999997654332
Q ss_pred E----EecCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEECCCCeeeEEEecc
Q 004603 635 T----FTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 635 ~----l~~h~~~V~sl~fsp~g~~-lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
+ -..|.+.+..+.|++.|.. +|+..-.=+.++|-|+|+++-...+...
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 2 2358899999999986643 4444444568999999998766555543
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=107.10 Aligned_cols=183 Identities=14% Similarity=0.149 Sum_probs=142.6
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-cCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 551 l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~-H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~ 629 (743)
++.|-..|.++.-+|...+.+||+.||.|++|-...+..+.+++. -...|+.++|+..|+.+..+..||.+.+|.+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence 344556688888899889999999999999999888887777642 237899999999999999999999999999873
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCcEEEEE---eCCCcEEEEECCCC---eeeEEEe--ccCceeeecCCCEEEEEecCC
Q 004603 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNG---SCAGVFK--VCNLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg---s~Dg~IrvWDl~tg---~~v~~~~--~~~~i~~s~~g~~l~sgs~Dg 701 (743)
.++.....|.....++.|... +++++ +.++.|.+||..-. .++++-. +.+.+.+.|.-..+++|+.+|
T Consensus 2283 -k~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 -KPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred -cceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 347788889999999999863 45554 35678999997532 3444211 235578889999999999999
Q ss_pred eEEEEecccceEEE---EecCCCCEEEEEeCCCeEEEeCCC
Q 004603 702 YLLLHRIFLNLLSV---SEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 702 ~I~vh~~~v~~l~v---~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.|++||..-..+.- ..+ ...++++|+..|.++||+-.
T Consensus 2359 ~v~l~D~rqrql~h~~~~~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQALD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred cEEEeehHHHHHHHHhhhhh-hhheeeccCcccceEEEEcc
Confidence 99999986432211 112 37799999999999999743
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=0.00033 Score=74.63 Aligned_cols=141 Identities=13% Similarity=0.163 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEE--EEcccCCC----------EEEEEEcCCCCEEEEEeC-CCeEE
Q 004603 558 VESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKS--TLEEHTQW----------ITDVRFSPSLSRLATSSA-DRTVR 622 (743)
Q Consensus 558 V~siafspdg~~LaSgs~-Dg~V~IWd~~t-~~~i~--~l~~H~~~----------V~~vafsp~~~~LaSgs~-Dg~Vr 622 (743)
-+-|+++++|++|+++.. -+.|.++-+.. |.... .+..|.+. +.+..|.|++++|++++. -..|.
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 478999999999999975 46789998855 33222 22345555 889999999999988864 55799
Q ss_pred EEECCCCCeeEE--EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEec-------------cCcee
Q 004603 623 VWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKV-------------CNLMP 686 (743)
Q Consensus 623 vWDl~~~~~~l~--~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~-------------~~~i~ 686 (743)
+|++..+..... ...........|.|||+++...+.+-.+++|-||..... ..+..+.. ...+.
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 999986553211 111234567889999999998889999999999998873 22222221 13377
Q ss_pred eecCCCEEEEEe
Q 004603 687 IILKGCFILNSI 698 (743)
Q Consensus 687 ~s~~g~~l~sgs 698 (743)
++++|+||++..
T Consensus 251 is~dGrFLYasN 262 (346)
T COG2706 251 ISPDGRFLYASN 262 (346)
T ss_pred ECCCCCEEEEec
Confidence 889999998874
No 271
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.37 E-value=1.1e-06 Score=64.02 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.0
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD 625 (743)
++++.++.+|...|++|+|+|++.+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999998
No 272
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.36 E-value=1.4e-06 Score=63.47 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.2
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd 583 (743)
+.+..+.+|.+.|++|+|+|++++|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 273
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.7e-05 Score=88.06 Aligned_cols=112 Identities=16% Similarity=0.255 Sum_probs=85.5
Q ss_pred CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCC
Q 004603 554 STSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN 628 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSg--s~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~---Dg~VrvWDl~~ 628 (743)
..++|.++.|+|+++-|+++ -.=-+|.|||++ ++++..| -.++-.++-|+|.|++|+.++. -|.|-|||+.+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 47899999999999866654 334578999976 5666555 3556678999999999988887 57899999998
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC-----CCcEEEEECC
Q 004603 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSIN 671 (743)
Q Consensus 629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~-----Dg~IrvWDl~ 671 (743)
. .++..+.... .+-++|+|||.+++.+.+. |..++||+..
T Consensus 346 ~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 346 R-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred h-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 4 4477766433 3457999999987755443 7789999976
No 274
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=4.1e-05 Score=85.07 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=96.3
Q ss_pred cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcE
Q 004603 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (743)
Q Consensus 578 ~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSg--s~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~l 655 (743)
++++.++....+...+. -.++|.++.|+|+++-|+++ -.-.+|.|||++- . ++..+ -+++-+++-|+|.|..+
T Consensus 252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~-~v~df--~egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-K-PVFDF--PEGPRNTAFFNPHGNII 326 (566)
T ss_pred eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-C-EeEeC--CCCCccceEECCCCCEE
Confidence 67777776434433333 47899999999999876554 3467899999884 2 24444 45777889999999876
Q ss_pred EEEEeC--CCcEEEEECCCCeeeEEEecc--CceeeecCCCEEEEEec------CCeEEEEecccceEE
Q 004603 656 LCSCDN--NSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIF------NCYLLLHRIFLNLLS 714 (743)
Q Consensus 656 L~Sgs~--Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~l~sgs~------Dg~I~vh~~~v~~l~ 714 (743)
+++|-. -|.|-|||+.+.+++..+... +.+.|+|||.|+++++. |+.++||......+.
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred EEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 666543 378999999999999888865 44779999999999876 555666766554443
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=1e-05 Score=91.26 Aligned_cols=218 Identities=10% Similarity=0.098 Sum_probs=146.7
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
.++++|+.||.+++.....+.......+ .....+...-.++.||++.|.-+.|+.....|.|...+|.|.||-+-.
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred CeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeec
Confidence 6999999999999996655432221111 112344566678999999999999999888999999999999998866
Q ss_pred CeEEEEE--cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603 587 FTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 587 ~~~i~~l--~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~ 664 (743)
+.....+ ....+.|.+++|+.+|..|+..-.||.|.|=.++-.+.--..+++ .....+.|++|.+.+| .+-..|.
T Consensus 103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~L-f~~ange 179 (1189)
T KOG2041|consen 103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQAL-FKKANGE 179 (1189)
T ss_pred ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHH-hhhcCCc
Confidence 5433222 124567899999999999999999999998888754432223332 2245788999977555 5667899
Q ss_pred EEEEECCCC-------eeeEEEecc----------------CceeeecCCCEEEEEecCCeEEEE-----------eccc
Q 004603 665 IRYWSINNG-------SCAGVFKVC----------------NLMPIILKGCFILNSIFNCYLLLH-----------RIFL 710 (743)
Q Consensus 665 IrvWDl~tg-------~~v~~~~~~----------------~~i~~s~~g~~l~sgs~Dg~I~vh-----------~~~v 710 (743)
+++||.... .|.....+. +...+-|+-..++++..+|.+.+. +...
T Consensus 180 ~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm 259 (1189)
T KOG2041|consen 180 THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGM 259 (1189)
T ss_pred EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence 999997532 121111110 112233677788888888887772 2223
Q ss_pred ceEEEEecCCCCEEEEEeCCC
Q 004603 711 NLLSVSEWCNPDEISTSSWKD 731 (743)
Q Consensus 711 ~~l~v~~~~~~~~laSgs~DG 731 (743)
......+..++..++.||.|.
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred EeecceecCCCcEEEEccCcc
Confidence 333334444466777776553
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.32 E-value=0.00011 Score=82.85 Aligned_cols=141 Identities=13% Similarity=0.043 Sum_probs=97.0
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeC--CCeEEEEECCCC
Q 004603 557 KVESCHFSPDGKL-LATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSA--DRTVRVWDTENP 629 (743)
Q Consensus 557 ~V~siafspdg~~-LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~--Dg~VrvWDl~~~ 629 (743)
.+..-.|+|||+. ++..+.+ ..|.++|+.+++...... ..+.+...+|+|||+.|+ +.+. +..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6789999999984 6654443 458888998877654443 456677889999998765 4433 356788888765
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEe-ccCceeeecCCCEEEEEecC
Q 004603 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK-VCNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~-~~~~i~~s~~g~~l~sgs~D 700 (743)
. ...+..+........|+|||..++++....+ .|.++|+.+++...... +.....++|+|.+|+..+..
T Consensus 268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcC
Confidence 4 3444444443456689999998887776555 58888998877643332 32335799999998776543
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.32 E-value=2.8e-05 Score=81.82 Aligned_cols=191 Identities=15% Similarity=0.181 Sum_probs=133.0
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004603 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 504 ~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd 583 (743)
+.+.-+.+.+.|.++++|.-.+.. ..|. .+.. --..+++++.++++.+.|+.|-..|+|.-+.
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~-------q~wp--------sI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSG-------QYWP--------SIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred cCCCCeEEccccceeeeEEecccc-------ccCc--------hhhh--hCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 344667899999999999554431 1111 1111 1235688999999999999999999998886
Q ss_pred CC----CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------------
Q 004603 584 TE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------------ 629 (743)
Q Consensus 584 ~~----t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~------------------------------ 629 (743)
+. ....++....|...|+.+-|+-....+++.+.|+.+..--.+.+
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gq 176 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQ 176 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccc
Confidence 53 34445566678888888888877777777777765432211110
Q ss_pred ----------CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeee-EEEeccC----ceeeecCCCEE
Q 004603 630 ----------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKVCN----LMPIILKGCFI 694 (743)
Q Consensus 630 ----------~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v-~~~~~~~----~i~~s~~g~~l 694 (743)
-.++.++.+|.+.+++++|.|.. .+|++|..|..|.+||+--++-+ ..+.+|. .+........+
T Consensus 177 vt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l 255 (404)
T KOG1409|consen 177 ITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQL 255 (404)
T ss_pred eEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheee
Confidence 11366788999999999999975 47779999999999999754322 3333432 24455666778
Q ss_pred EEEecCCeEEEEecccce
Q 004603 695 LNSIFNCYLLLHRIFLNL 712 (743)
Q Consensus 695 ~sgs~Dg~I~vh~~~v~~ 712 (743)
++.+.|+.|.+|+.....
T Consensus 256 ~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 256 ISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eeccCCCeEEEEecccee
Confidence 999999999998876543
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.30 E-value=1.5e-06 Score=98.35 Aligned_cols=153 Identities=20% Similarity=0.318 Sum_probs=110.4
Q ss_pred eEEEEEcCCC--CEEEEEeCCCcEEEEECCC---CeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe
Q 004603 558 VESCHFSPDG--KLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 558 V~siafspdg--~~LaSgs~Dg~V~IWd~~t---~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~ 631 (743)
|-.+.|+|.. .+-++.....+..||++.. ......+.+|+..|+.+.|+|. ...+++++.|..|..||++....
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 5566777633 2333333455567898743 3455677899999999999995 66889999999999999999888
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEeccCceeee-----cCCCEEEEEecCCeEEE
Q 004603 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCNLMPII-----LKGCFILNSIFNCYLLL 705 (743)
Q Consensus 632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~~i~~s-----~~g~~l~sgs~Dg~I~v 705 (743)
++..+..-...-..|.|+-..+.++++ +....|+|||++.| .++..++++.....+ .....+++.+.|++|++
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 787776656667889999888878855 44678999999976 466777775432222 12334777788888888
Q ss_pred Eecccc
Q 004603 706 HRIFLN 711 (743)
Q Consensus 706 h~~~v~ 711 (743)
|+..-.
T Consensus 229 w~y~kS 234 (1081)
T KOG0309|consen 229 WDYSKS 234 (1081)
T ss_pred eccccc
Confidence 776543
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.29 E-value=0.00015 Score=90.65 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=106.8
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEccc---------------CCCEEEEEEcCCCCEE-EEEeCCCe
Q 004603 558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---------------TQWITDVRFSPSLSRL-ATSSADRT 620 (743)
Q Consensus 558 V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H---------------~~~V~~vafsp~~~~L-aSgs~Dg~ 620 (743)
..+|+|+| ++.++++.+.++.|++||..++... ++.+. -.....|+|+|++..| ++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 46899999 5667777778899999998776543 22211 1234579999998855 55566899
Q ss_pred EEEEECCCCCeeEEE------------Eec--------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe
Q 004603 621 VRVWDTENPDYSLRT------------FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 621 VrvWDl~~~~~~l~~------------l~~--------h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~ 680 (743)
|++||+.++...+.. +.. .-....+++|+++|. ++++...++.|++||..++.+.....
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEec
Confidence 999999876532111 000 011346899999986 77788889999999998877653321
Q ss_pred -----------------ccCceeeecCCCEEEEEecCCeEEEEeccc
Q 004603 681 -----------------VCNLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 681 -----------------~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v 710 (743)
....++++++|..+++-+.+++|++++...
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 123478889999888889999999987654
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.26 E-value=2.5e-06 Score=88.20 Aligned_cols=151 Identities=17% Similarity=0.262 Sum_probs=105.5
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEccc-----CCCEEEEEEcCC-CCEEEEEeCCCeEE
Q 004603 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVR 622 (743)
Q Consensus 552 ~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~---~i~~l~~H-----~~~V~~vafsp~-~~~LaSgs~Dg~Vr 622 (743)
..|.-.|.+|.|+.|...++++. |-.|.+|+++-.. .+.-++.| +..|++..|+|. ...+.-++..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 57888899999999988888765 7789999986422 22233333 456899999995 56777777899999
Q ss_pred EEECCCCCeeE---------------EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEeccC---
Q 004603 623 VWDTENPDYSL---------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCN--- 683 (743)
Q Consensus 623 vWDl~~~~~~l---------------~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~--- 683 (743)
+-|+|....|. ..+.+-.+.|..+.|++.|++++ +-+ =-+|+|||++.. .++.++..|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRd-yltvkiwDvnm~k~pikTi~~h~~l~ 325 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRD-YLTVKIWDVNMAKNPIKTIPMHCDLM 325 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eec-cceEEEEecccccCCceeechHHHHH
Confidence 99998543321 11223446788999999988555 544 358999999864 5677765331
Q ss_pred ----------------ceeeecCCCEEEEEecCCeEEE
Q 004603 684 ----------------LMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 684 ----------------~i~~s~~g~~l~sgs~Dg~I~v 705 (743)
.+.|+-+...+++|+.....-+
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence 1456667777777777665555
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.23 E-value=0.00036 Score=77.45 Aligned_cols=208 Identities=9% Similarity=-0.078 Sum_probs=123.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
+..+..++.|+.+..|+..++. .+|..... +.+.+.-.. .+..++.++.|+.|..||.+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~-------~~W~~~~~-------------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~ 163 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGK-------ELWRAKLS-------------SEVLSPPLV-ANGLVVVRTNDGRLTALDAA 163 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCc-------EeeeeccC-------------ceeecCCEE-ECCEEEEECCCCeEEEEEcC
Confidence 4566677788888888665442 11211100 111111011 34567777889999999999
Q ss_pred CCeEEEEEcccCCCEEEEE-EcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEEec-CCC------C---e-EEEEEecC
Q 004603 586 SFTVKSTLEEHTQWITDVR-FSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG-HST------T---V-MSLDFHPS 651 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~va-fsp--~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~-h~~------~---V-~sl~fsp~ 651 (743)
+++.+-.+......+.... -+| .+..++.+..++.|..+|++++.. +..... ... . + .+..+.
T Consensus 164 tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~-~W~~~~~~~~g~~~~~~~~~~~~~p~~~-- 240 (377)
T TIGR03300 164 TGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQP-LWEQRVALPKGRTELERLVDVDGDPVVD-- 240 (377)
T ss_pred CCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCE-eeeeccccCCCCCchhhhhccCCccEEE--
Confidence 9988766654322211000 011 134678888899999999998764 332211 000 0 0 111222
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEEEEec-----------CC
Q 004603 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEW-----------CN 720 (743)
Q Consensus 652 g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v~~~-----------~~ 720 (743)
+. .++.++.++.++.||..+|+.+..............+..++.++.|+.+...+.....+.|... -.
T Consensus 241 ~~-~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~ 319 (377)
T TIGR03300 241 GG-QVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV 319 (377)
T ss_pred CC-EEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE
Confidence 23 4446777999999999999887766643333344567788888888888886654332222220 12
Q ss_pred CCEEEEEeCCCeEEEeCC
Q 004603 721 PDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 721 ~~~laSgs~DG~V~iWd~ 738 (743)
++.+++++.||.|+++|.
T Consensus 320 g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CCEEEEEeCCCEEEEEEC
Confidence 568999999999999975
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.22 E-value=7.3e-06 Score=87.72 Aligned_cols=147 Identities=13% Similarity=0.131 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEEcccCCCEEEEEEcCCCCEEEEE---eCCCeEEEEECCCCC
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATS---SADRTVRVWDTENPD 630 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~----~i~~l~~H~~~V~~vafsp~~~~LaSg---s~Dg~VrvWDl~~~~ 630 (743)
+..+.+++++++||++..++...+++++... ++.++... ..-+++.|..+...+..+ +....+.+|.+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 4456678889999999888887777765422 22222221 222344444443444333 4455556666554
Q ss_pred eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe-ccCcee--ee-cCCCEEEEEecCCeEEEE
Q 004603 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-VCNLMP--II-LKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 631 ~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~-~~~~i~--~s-~~g~~l~sgs~Dg~I~vh 706 (743)
.+...+.||.+.++.|+|+||+. ++++++.|..|||-....--.+..|- ||+.+. ++ .++..|++++.|++|++|
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLW 220 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEE
Confidence 23566778999999999999986 56699999999997665444444433 232211 11 223335555555555555
Q ss_pred ec
Q 004603 707 RI 708 (743)
Q Consensus 707 ~~ 708 (743)
+.
T Consensus 221 d~ 222 (390)
T KOG3914|consen 221 DI 222 (390)
T ss_pred ec
Confidence 54
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=3e-05 Score=89.27 Aligned_cols=143 Identities=10% Similarity=0.123 Sum_probs=102.8
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
++++++-|+++|.|+++..... . .....|+.. ..+|.+++||+.||+|.|..+
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~--------------------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGN--------------------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSL 100 (846)
T ss_pred hcceeeeccccceEEEEecCCc--------------------c-ccccccccc------ccCCceEEEecCCCcEEEeec
Confidence 4589999999999999844332 1 122233332 458999999999999999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEECCC--CCeeEEEEecCCCCeEEEEEecCCCcEEE
Q 004603 585 ESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafsp~-----~~~LaSgs~Dg~VrvWDl~~--~~~~l~~l~~h~~~V~sl~fsp~g~~lL~ 657 (743)
.+.+...++.- ..++.+|+++|+ .+.+++|+..| +.++.-+- .+..+ .+..-.++|.+++|..+ +++
T Consensus 101 ~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~---lIA 174 (846)
T KOG2066|consen 101 FTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN---LIA 174 (846)
T ss_pred cCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc---EEE
Confidence 88777666653 567999999997 56899999888 66664221 11112 45556789999999843 776
Q ss_pred EEeCCCcEEEEECCCCeeeEEEec
Q 004603 658 SCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
-++.+ .|+|||+.+++.+..+..
T Consensus 175 Wand~-Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 175 WANDD-GVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred EecCC-CcEEEeccccceeeccCC
Confidence 66655 499999999887766654
No 284
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.3e-06 Score=90.30 Aligned_cols=182 Identities=15% Similarity=0.083 Sum_probs=129.9
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCC-ceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG-FTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW 582 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~-Dg~V~IW 582 (743)
..+++.+++.|+.++.|.- +. .-.+.+..+..|-+.|.+++.+-++.+++|.+. |+.++++
T Consensus 19 ka~fiiqASlDGh~KFWkK-----------------s~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKK-----------------SRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred hhheEEeeecchhhhhcCC-----------------CCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 3479999999999999922 22 234567788899999999999999999999888 9999999
Q ss_pred ECCCCeEEEEEc--ccCCCEEEEEEcCC-C-CEE-EEEeCCCeEEEEECCCCCeeEE-EEecCCCCeEEEEEecCCCcEE
Q 004603 583 CTESFTVKSTLE--EHTQWITDVRFSPS-L-SRL-ATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLL 656 (743)
Q Consensus 583 d~~t~~~i~~l~--~H~~~V~~vafsp~-~-~~L-aSgs~Dg~VrvWDl~~~~~~l~-~l~~h~~~V~sl~fsp~g~~lL 656 (743)
|+++...+.-++ .-.+.+.++ .++. . ..| ++.-.++.|.|+|-+...+... .-.-|..+|..+.+.+.+. .+
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SA 159 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ce
Confidence 998765543222 122223222 2332 1 133 3334589999999876554333 3345899999999999987 45
Q ss_pred EEEeCCCcEEEEECCC------CeeeEEEec-------------cCceeeecCCCEEEEEecCCeEEE
Q 004603 657 CSCDNNSEIRYWSINN------GSCAGVFKV-------------CNLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 657 ~Sgs~Dg~IrvWDl~t------g~~v~~~~~-------------~~~i~~s~~g~~l~sgs~Dg~I~v 705 (743)
++....|.|..|.... .+....++. .+++.++|+|..+.+-..|.+|++
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 5888889999998772 222222221 245889999999999999999998
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.20 E-value=7.5e-05 Score=81.36 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=111.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004603 553 ASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 553 ~H~~~V~siafspdg~~LaSgs~Dg-~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~ 631 (743)
+|.+.|.-..+..+++-++.|..|| .+-|+|.++++.. .+++.-+.|.++..+++|++++.+.....|.+.|++++..
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 6777799889988888999999999 8999999987654 4556678899999999999999999999999999999774
Q ss_pred eEEEEecCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEe
Q 004603 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSI 698 (743)
Q Consensus 632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg----~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs 698 (743)
...-+...+-|+.++|||+++++. -+--+| .|+++|+..++....-... -+.+|.|+++||.--+
T Consensus 436 -~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 436 -RLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -eEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 233334567899999999987544 443344 6999999988876544321 1245788998866543
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.19 E-value=0.00019 Score=81.06 Aligned_cols=142 Identities=13% Similarity=0.055 Sum_probs=90.3
Q ss_pred CCCCeEEEEEcCCCCEEEE-EeCC--CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCC--eEEEEECC
Q 004603 554 STSKVESCHFSPDGKLLAT-GGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADR--TVRVWDTE 627 (743)
Q Consensus 554 H~~~V~siafspdg~~LaS-gs~D--g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg--~VrvWDl~ 627 (743)
..+.+.+.+|+|||+.|+. .+.+ ..|.++|+.+++.. .+..+........|+|||+.|+-.+ ..+ .|.++|+.
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 4455667889999986654 3334 45777788777644 3444443344568999998776555 333 57777887
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC--------CcEEEEECCCCeeeEEEec--cCceeeecCCCEEEEE
Q 004603 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNS 697 (743)
Q Consensus 628 ~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D--------g~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sg 697 (743)
++.....++.+. ....|+|+|+.+++++..+ ..|.+.|+.++........ .....|+|+|..|+..
T Consensus 310 ~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 310 SGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFI 385 (419)
T ss_pred CCCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEE
Confidence 765422222222 1248999999887776543 3688889888764322222 2336789999987766
Q ss_pred ecC
Q 004603 698 IFN 700 (743)
Q Consensus 698 s~D 700 (743)
+.+
T Consensus 386 ~~~ 388 (419)
T PRK04043 386 KYL 388 (419)
T ss_pred Ecc
Confidence 543
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.15 E-value=7.1e-06 Score=83.35 Aligned_cols=171 Identities=11% Similarity=0.135 Sum_probs=106.5
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEc-ccCCCEEEEEEcCCCCEEEEEeC-----C
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLE-EHTQWITDVRFSPSLSRLATSSA-----D 618 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~-i~~l~-~H~~~V~~vafsp~~~~LaSgs~-----D 618 (743)
...+++.-|+++-.+-+.+-.++.++++..||.+.+++.+.... .+.+. .|.+ -.+.++...++.|.++.. -
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeec
Confidence 44555556665555555555778899999999999999875111 11111 1111 111222223444433321 2
Q ss_pred CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeee-EEEeccC----ceeeec-CCC
Q 004603 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKVCN----LMPIIL-KGC 692 (743)
Q Consensus 619 g~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v-~~~~~~~----~i~~s~-~g~ 692 (743)
+..+.|+++..+....... ....|.++|-||.-.+++++|+.||.|-+||.+..... ..++.|. .+-|+| ++.
T Consensus 159 d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred cceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence 3355666654332111111 22449999999998999999999999999999987433 2233332 256775 677
Q ss_pred EEEEEecCCeEEEEecccceEEEEec
Q 004603 693 FILNSIFNCYLLLHRIFLNLLSVSEW 718 (743)
Q Consensus 693 ~l~sgs~Dg~I~vh~~~v~~l~v~~~ 718 (743)
.|+++++||.+-.|+...+.+.+...
T Consensus 238 ~Lft~sedGslw~wdas~~~l~i~~~ 263 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDASTTFLSISNQ 263 (319)
T ss_pred heeEecCCCcEEEEcCCCceEEecCc
Confidence 89999999999999998877776544
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.13 E-value=0.00014 Score=79.27 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=83.9
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC----eEE
Q 004603 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVR 622 (743)
Q Consensus 547 ~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg----~Vr 622 (743)
+++.+...-+.|.++..+++|++++.+.+...+.+.|+++++....=+...+-|+.+.|||++++||-+--+| .|+
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik 472 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK 472 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence 4566677778899999999999999999888999999999887655555667899999999999999887766 489
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEE
Q 004603 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (743)
Q Consensus 623 vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL 656 (743)
++|+..++. .......+.-.+-+|.|+++++.
T Consensus 473 lydm~~~Ki--y~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 473 LYDMDGGKI--YDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred EEecCCCeE--EEecCCcccccCcccCCCCcEEE
Confidence 999987653 22222333345567777777654
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.11 E-value=0.00084 Score=68.90 Aligned_cols=170 Identities=9% Similarity=-0.025 Sum_probs=104.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-EecCC---C
Q 004603 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHS---T 641 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~-l~~h~---~ 641 (743)
++..+++++.++.|..||..+++.+-.+.. ...+.... ...+..++.++.|+.|+.+|+.+++. +.. ..... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~-~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKV-LWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCE-EEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcce-eeeeccccccccc
Confidence 566777878999999999999998877764 22211111 11356677777889999999999886 444 23221 1
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc-------------eeeecCCCEEEEEecCCe-EEE--
Q 004603 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-------------MPIILKGCFILNSIFNCY-LLL-- 705 (743)
Q Consensus 642 ~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-------------i~~s~~g~~l~sgs~Dg~-I~v-- 705 (743)
..........+. .++.+..++.|..+|+++|+.+..+..... ......+..++.++.++. +.+
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~ 190 (238)
T PF13360_consen 112 VRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDL 190 (238)
T ss_dssp TB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEET
T ss_pred cccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEEC
Confidence 112222222244 444666689999999999999888875331 111122337777776663 444
Q ss_pred ------EecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 706 ------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 706 ------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|..........+...+..++.++.++.|..||-.
T Consensus 191 ~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 191 ATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp TTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred CCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 3222222222123346788888899999999854
No 290
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.10 E-value=0.0011 Score=73.43 Aligned_cols=205 Identities=9% Similarity=-0.004 Sum_probs=122.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
+..+..++.++.|..++..++. .+|...... ... ..... ++..++.++.|+.|..+|..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~-------~~W~~~~~~---------~~~---~~p~v--~~~~v~v~~~~g~l~ald~~ 123 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK-------RLWRVDLDE---------RLS---GGVGA--DGGLVFVGTEKGEVIALDAE 123 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc-------EeeeecCCC---------Ccc---cceEE--cCCEEEEEcCCCEEEEEECC
Confidence 3567777788888888655442 122111110 000 11222 46778888899999999999
Q ss_pred CCeEEEEEcccCCCEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe-----EEEEEecCCCcEEEEE
Q 004603 586 SFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----MSLDFHPSKEDLLCSC 659 (743)
Q Consensus 586 t~~~i~~l~~H~~~V~~-vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V-----~sl~fsp~g~~lL~Sg 659 (743)
+++.+...... +.+.+ ..+ .+..++.++.|+.|..||.++++. +..+......+ .+..+. + . .++.+
T Consensus 124 tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~~~~~sp~~~-~-~-~v~~~ 196 (377)
T TIGR03300 124 DGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTLRGSASPVIA-D-G-GVLVG 196 (377)
T ss_pred CCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceeecCCCCCEEE-C-C-EEEEE
Confidence 99887655432 22221 111 245777788899999999998775 44443222111 111222 2 2 45577
Q ss_pred eCCCcEEEEECCCCeeeEEEeccCc-----------e--eeecCCCEEEEEecCCeEEEEecccceEEEEec--------
Q 004603 660 DNNSEIRYWSINNGSCAGVFKVCNL-----------M--PIILKGCFILNSIFNCYLLLHRIFLNLLSVSEW-------- 718 (743)
Q Consensus 660 s~Dg~IrvWDl~tg~~v~~~~~~~~-----------i--~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v~~~-------- 718 (743)
..++.|..+|+++|+.+........ + .....+..++.++.++.+..++.....+.|...
T Consensus 197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~ 276 (377)
T TIGR03300 197 FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA 276 (377)
T ss_pred CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce
Confidence 7789999999999987765432100 0 111245678888888888886654333333221
Q ss_pred CCCCEEEEEeCCCeEEEeCC
Q 004603 719 CNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 719 ~~~~~laSgs~DG~V~iWd~ 738 (743)
..++.++.++.||.|+.+|.
T Consensus 277 ~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 277 VDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred EeCCEEEEECCCCeEEEEEC
Confidence 12568888889999888865
No 291
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.08 E-value=3.2e-05 Score=89.82 Aligned_cols=148 Identities=19% Similarity=0.172 Sum_probs=110.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC---------CCeEEEEE
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWD 625 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~---------Dg~VrvWD 625 (743)
.+.|+-++. +++++++|...|+|.+-|.++.+.+.++..|++.|.++.. .|+.|+||+. |..|+|||
T Consensus 177 a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 177 ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence 334555554 6899999999999999999999999999999999988765 4889999986 66799999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE---CCCCee-eEEEe----ccCceeeecCCCEEEEE
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNGSC-AGVFK----VCNLMPIILKGCFILNS 697 (743)
Q Consensus 626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWD---l~tg~~-v~~~~----~~~~i~~s~~g~~l~sg 697 (743)
+|..+. +.-+.-+.+ ..-+.|+|.=...++.++..|.+.+-| +.+... +..+. +...+++++.|..++.|
T Consensus 253 LRmmra-l~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafg 330 (1118)
T KOG1275|consen 253 LRMMRA-LSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFG 330 (1118)
T ss_pred hhhhhc-cCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEe
Confidence 997543 333322333 356789998666777788889999988 333211 11111 13457788999999999
Q ss_pred ecCCeEEEEec
Q 004603 698 IFNCYLLLHRI 708 (743)
Q Consensus 698 s~Dg~I~vh~~ 708 (743)
..+|.|.+|..
T Consensus 331 d~~g~v~~wa~ 341 (1118)
T KOG1275|consen 331 DHEGHVNLWAD 341 (1118)
T ss_pred cccCcEeeecC
Confidence 99999999873
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=9.7e-05 Score=84.59 Aligned_cols=121 Identities=20% Similarity=0.341 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCC------------CEEEEEeCCCeEEEEE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVWD 625 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~------------~~LaSgs~Dg~VrvWD 625 (743)
-.++.|+|.| +||-|+. ..|.|-|..+.+.+.+++-|...|+.|+|.|.. -+|+++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5678899876 6777775 468899999999999999999999999998721 2578888899999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecC---CCcEEEEEeCCCcEEEEECCCCeeeEEEec
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 626 l~~~~~~l~~l~~h~~~V~sl~fsp~---g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
...... +..+..|.++|..++|-+. .+++|++-....+|.+|+..+|+.+..+..
T Consensus 96 ~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 96 FVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred ehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence 998654 6778888999999999764 345777777778999999999987665543
No 293
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.07 E-value=0.0004 Score=78.34 Aligned_cols=126 Identities=12% Similarity=0.152 Sum_probs=85.2
Q ss_pred eeeeEEEeeCCCCCeEEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCeEE--EEE-cccCCCEEEEEEcCCCCE
Q 004603 544 TFTEFQLIPASTSKVESCHFSP-DGKLLATG----GHDKKA----VLWCTESFTVK--STL-EEHTQWITDVRFSPSLSR 611 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafsp-dg~~LaSg----s~Dg~V----~IWd~~t~~~i--~~l-~~H~~~V~~vafsp~~~~ 611 (743)
.++.+..++.-.+ ..++.|+- +...+.|. +.+|.+ ++|++...+.. ... -.....|.|++++|+...
T Consensus 195 klEvL~yirTE~d-Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k 273 (545)
T PF11768_consen 195 KLEVLSYIRTEND-PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK 273 (545)
T ss_pred cEEEEEEEEecCC-cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce
Confidence 3444444444334 46777876 44444443 334443 35555443321 111 245778999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 612 LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~ 674 (743)
|+.|+.||.|.+||...+. ..+..+.-.++.++|||+|. +++.|+.-|.|.+||+.-..
T Consensus 274 LvlGC~DgSiiLyD~~~~~---t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 274 LVLGCEDGSIILYDTTRGV---TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEecCCeEEEEEcCCCe---eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence 9999999999999987643 33334556688999999987 66688888999999987543
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.06 E-value=0.006 Score=63.46 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=109.2
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-----cCCCEEEEEEcCCCCEEEEEeCC--------CeEEE
Q 004603 558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV 623 (743)
Q Consensus 558 V~siafs-pdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~-----H~~~V~~vafsp~~~~LaSgs~D--------g~Vrv 623 (743)
...+++. +++++ +.+..+ .+.++|..+++....+.. ......++++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEE-EEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEE-EEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6777887 56554 444544 456669988765544432 34568899999999988877654 45777
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee----eEEE---ec----cCceeeecCCC
Q 004603 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVF---KV----CNLMPIILKGC 692 (743)
Q Consensus 624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~----v~~~---~~----~~~i~~s~~g~ 692 (743)
++.. +. +..+...-...+.|+|+|+++.++++-+..+.|..||+..... ...+ .. ...+++..+|+
T Consensus 120 ~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 120 IDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp EETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred ECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 7766 33 3333334566899999999998888888899999999863221 1222 22 23478888998
Q ss_pred EEEEEecCCeEEEEecccceEEEEecC--CCCEEEEEeCC-CeEEE
Q 004603 693 FILNSIFNCYLLLHRIFLNLLSVSEWC--NPDEISTSSWK-DSCCS 735 (743)
Q Consensus 693 ~l~sgs~Dg~I~vh~~~v~~l~v~~~~--~~~~laSgs~D-G~V~i 735 (743)
+.++....+.|.+.+.....+.....+ ....++-|+.| ++++|
T Consensus 197 l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred EEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 888877888888877776555433322 12334444555 34443
No 295
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.01 E-value=9.1e-05 Score=83.41 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=64.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004603 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 553 ~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~ 630 (743)
.....|.|++++|+...|+.|+.||.|++||...+-. .+..+.-..+.++|||+|..|++|+.-|.|.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 4667899999999999999999999999999876533 333445668899999999999999999999999986543
No 296
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.98 E-value=4.1e-05 Score=89.03 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=110.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC---------C
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---------D 576 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~---------D 576 (743)
.+++.+|...|+|.+- +...++.++++.+|++.|.++.. .|++|++||. |
T Consensus 187 nr~lf~G~t~G~V~Lr-------------------D~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D 245 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLR-------------------DPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMD 245 (1118)
T ss_pred CcEEEeecccceEEee-------------------cCCcCceeeeeeccccceeeeec--cCCeEEEeeccccccccccc
Confidence 4788888888888777 44566789999999999988777 6889999874 6
Q ss_pred CcEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEE---CCCCCeeEEEEecCCCCeEEEEEecCC
Q 004603 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD---TENPDYSLRTFTGHSTTVMSLDFHPSK 652 (743)
Q Consensus 577 g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWD---l~~~~~~l~~l~~h~~~V~sl~fsp~g 652 (743)
..|+|||++..+.+.-+.-|.++ .-++|+|. ...+++++..|.+.+-| +.++...+..+....+.+.++++++++
T Consensus 246 ~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 246 PFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG 324 (1118)
T ss_pred chhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC
Confidence 78899999987766655555544 56789996 66788888999999999 444433234444455669999999997
Q ss_pred CcEEEEEeCCCcEEEEE
Q 004603 653 EDLLCSCDNNSEIRYWS 669 (743)
Q Consensus 653 ~~lL~Sgs~Dg~IrvWD 669 (743)
. .++.|..+|.|.+|-
T Consensus 325 ~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 325 D-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred c-eEEEecccCcEeeec
Confidence 6 788999999999996
No 297
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.97 E-value=0.0027 Score=69.55 Aligned_cols=152 Identities=10% Similarity=0.035 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCeEEEEEcc------------------------------------cCCC
Q 004603 558 VESCHFSPDGKLLATGG-H-DKKAVLWCTESFTVKSTLEE------------------------------------HTQW 599 (743)
Q Consensus 558 V~siafspdg~~LaSgs-~-Dg~V~IWd~~t~~~i~~l~~------------------------------------H~~~ 599 (743)
...++++|||++|++.. . +..|-|.|+.+++.+..+.- ++..
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~ 186 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE 186 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence 34788899999888776 3 67888898887665543310 0001
Q ss_pred EEEE---------EEcC-CCCEEEEEeCCCeEEEEECCCCC----eeEEEEec-------CCCCeEEEEEecCCCcEEEE
Q 004603 600 ITDV---------RFSP-SLSRLATSSADRTVRVWDTENPD----YSLRTFTG-------HSTTVMSLDFHPSKEDLLCS 658 (743)
Q Consensus 600 V~~v---------afsp-~~~~LaSgs~Dg~VrvWDl~~~~----~~l~~l~~-------h~~~V~sl~fsp~g~~lL~S 658 (743)
|... .|.+ ++.+++.... |+|.+.|+.... ..+..+.. ..+.+.-++++|++..+++.
T Consensus 187 vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~ 265 (352)
T TIGR02658 187 VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL 265 (352)
T ss_pred eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence 1000 1223 6777766655 999999964322 11222211 12333459999999988875
Q ss_pred Ee---------CCCcEEEEECCCCeeeEEEecc---CceeeecCCC-EEEEEe-cCCeEEEEeccc
Q 004603 659 CD---------NNSEIRYWSINNGSCAGVFKVC---NLMPIILKGC-FILNSI-FNCYLLLHRIFL 710 (743)
Q Consensus 659 gs---------~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~-~l~sgs-~Dg~I~vh~~~v 710 (743)
.. ..++|.++|..+++.+..+... ..+.+++|++ +|++.. .++.|.+.+...
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 42 2258999999999999888743 4588999999 777665 577788877643
No 298
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.0012 Score=70.46 Aligned_cols=156 Identities=12% Similarity=0.052 Sum_probs=107.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCC--CeEE--EEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEE
Q 004603 553 ASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTES--FTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 624 (743)
Q Consensus 553 ~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t--~~~i--~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvW 624 (743)
.+.+.++-++|+|+.++|+++..+ |.|..|.++. |+.. .........-+.|++++++++|+++.. -|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 445668899999999999888654 6777777664 4332 111122233478999999999998875 7899999
Q ss_pred ECCCCCee--EEEEecCCCC----------eEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE----e---ccCce
Q 004603 625 DTENPDYS--LRTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----K---VCNLM 685 (743)
Q Consensus 625 Dl~~~~~~--l~~l~~h~~~----------V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~----~---~~~~i 685 (743)
-++..... +.....|.+. +....|.|++++++++.=.--.|.+|++..|+....- + +...+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 98764321 1122335544 8899999999866654433347999999977643221 1 34669
Q ss_pred eeecCCCEEEEEe-cCCeEEEEec
Q 004603 686 PIILKGCFILNSI-FNCYLLLHRI 708 (743)
Q Consensus 686 ~~s~~g~~l~sgs-~Dg~I~vh~~ 708 (743)
.|+|++++.+... .+++|.+|..
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEE
Confidence 9999999987754 5778877544
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.90 E-value=0.006 Score=63.52 Aligned_cols=178 Identities=12% Similarity=0.033 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-------cCCCEEEEEEcCC------CCEEEEEeCCCeEEEE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRVW 624 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~-------H~~~V~~vafsp~------~~~LaSgs~Dg~VrvW 624 (743)
=.-++||||+.+||.+...|+|++||+.... +..+.. -...|..+.|-+. ...|+.-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 5679999999999999999999999987533 333321 1345666777542 1246666778888877
Q ss_pred ECCCC--C--eeEEEEe---cCCCCeEEEEEecCCCcEEEEEeCCCc----------EEEEECCCCeeeEEEe--ccCce
Q 004603 625 DTENP--D--YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSE----------IRYWSINNGSCAGVFK--VCNLM 685 (743)
Q Consensus 625 Dl~~~--~--~~l~~l~---~h~~~V~sl~fsp~g~~lL~Sgs~Dg~----------IrvWDl~tg~~v~~~~--~~~~i 685 (743)
-+..+ . ...++|. .+...|.++.|+|...-+++.|+.... +..|-+-++.+..... ....+
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 65321 1 1122222 346789999999997766666654432 4445444433221111 00111
Q ss_pred eeec-CCCEEEEEecCCeEEEE----ecccceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603 686 PIIL-KGCFILNSIFNCYLLLH----RIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 686 ~~s~-~g~~l~sgs~Dg~I~vh----~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
...+ ...++-.. .+++. ......+.++..+++..|++...+|.|.+|+-..
T Consensus 205 ~~~~~~~~~~~~~----~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 205 TASSKRRGLLRIP----SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cccccccceeecc----ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 1111 00000000 01111 1122334445555678899999999999997554
No 300
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00045 Score=79.82 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~ 627 (743)
+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|+++|..++|+..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6679999999899999999999999988877766777899999999999999999999999999999865
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00013 Score=78.43 Aligned_cols=94 Identities=14% Similarity=0.221 Sum_probs=80.3
Q ss_pred EEEEECCCCeEEEEEcccCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEE
Q 004603 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 579 V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~-~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~ 657 (743)
|++.+..+.+....+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++.. ++..+..| ..+++++|+-+..+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 66666666666667778889999999999755 78889999999999999844 47778877 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCe
Q 004603 658 SCDNNSEIRYWSINNGS 674 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~ 674 (743)
+|...|.|.|||++..+
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 99999999999999654
No 302
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00019 Score=77.05 Aligned_cols=122 Identities=19% Similarity=0.188 Sum_probs=90.1
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~-~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~Vrv 623 (743)
+....+.+|...|.+++|+|..+ ++..++.+++|+|.|+++...+..+..| ..+++++|+-+ .++|+.|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 33446678888999999999766 8899999999999999998888888887 78999999886 567888889999999
Q ss_pred EECCCCCeeEEEEec--CCCCeEEEEEe------cCCCcEEEEEeCCCcEEEEECC
Q 004603 624 WDTENPDYSLRTFTG--HSTTVMSLDFH------PSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 624 WDl~~~~~~l~~l~~--h~~~V~sl~fs------p~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
||++..+.++..+.+ ...+|..|+.- +.|. +|+..+.+ +.+|.+.
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~ 315 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIV 315 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhh
Confidence 999987765555544 12344444322 2233 55444433 5666654
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.80 E-value=0.0029 Score=67.46 Aligned_cols=166 Identities=12% Similarity=0.098 Sum_probs=110.4
Q ss_pred CccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCeEEEE
Q 004603 531 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH------------------DKKAVLWCTESFTVKST 592 (743)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~------------------Dg~V~IWd~~t~~~i~~ 592 (743)
...+.+|+.. ..+..+.++..|--.-..+.+.|||+.|+++-. +-.+.+.|..+++.+..
T Consensus 76 ~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 76 RGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred cEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 3334444443 245677778877777788999999987777631 12344445667776665
Q ss_pred --E--cccCCCEEEEEEcCCCCEEEEEeCCCe-------EEEEECCCCCeeEEEEe-------cCCCCeEEEEEecCCCc
Q 004603 593 --L--EEHTQWITDVRFSPSLSRLATSSADRT-------VRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKED 654 (743)
Q Consensus 593 --l--~~H~~~V~~vafsp~~~~LaSgs~Dg~-------VrvWDl~~~~~~l~~l~-------~h~~~V~sl~fsp~g~~ 654 (743)
+ .-|...|..++++++|..++..-..|. |-+++-... +..+. .-...|-+|++++++..
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 3 337778999999999877666654432 334433321 22221 23467899999999998
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCC-EEEEEecCC
Q 004603 655 LLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGC-FILNSIFNC 701 (743)
Q Consensus 655 lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~-~l~sgs~Dg 701 (743)
+.+|+-..+.+.+||..+++++........+.+.+... |+++.+...
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~f~~ssG~G~ 278 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDGFLVSSGQGQ 278 (305)
T ss_pred EEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCceEEeCCCcc
Confidence 99999999999999999999998887766555443222 555555443
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.77 E-value=0.0092 Score=61.13 Aligned_cols=145 Identities=9% Similarity=0.025 Sum_probs=93.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEE-cccC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC
Q 004603 566 DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l-~~H~---~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~ 641 (743)
++..++.++.|+.|+.+|..+++.+..+ .... ...........+..++.+..++.|..+|+++++. +..+.....
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-LWKYPVGEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE-EEEEESSTT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE-EEEeecCCC
Confidence 4556677778889999999999988774 3221 1112222222377888888899999999999875 555554332
Q ss_pred C----------e-EEEEEecCCCcEEEEEeCCCc-EEEEECCCCeeeEEEeccCcee-eecCCCEEEEEecCCeEEEEec
Q 004603 642 T----------V-MSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKVCNLMP-IILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 642 ~----------V-~sl~fsp~g~~lL~Sgs~Dg~-IrvWDl~tg~~v~~~~~~~~i~-~s~~g~~l~sgs~Dg~I~vh~~ 708 (743)
. + ..+.+. ++ .++ .++.++. +.+ |+.+++.+.......... ...++..++.++.++.|.+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~-~v~-~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS-DG-RVY-VSSGDGRVVAV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp -SS--EEEETTEEEEEECC-TT-EEE-EECCTSSEEEE-ETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEET
T ss_pred CCCcceeeecccccceEEE-CC-EEE-EEcCCCeEEEE-ECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEEC
Confidence 2 1 222222 33 344 5555665 555 999999765444233333 6688889998889999998887
Q ss_pred ccceEEE
Q 004603 709 FLNLLSV 715 (743)
Q Consensus 709 ~v~~l~v 715 (743)
......|
T Consensus 230 ~tG~~~W 236 (238)
T PF13360_consen 230 KTGKVVW 236 (238)
T ss_dssp TTTEEEE
T ss_pred CCCCEEe
Confidence 7665554
No 305
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.00013 Score=82.61 Aligned_cols=116 Identities=17% Similarity=0.274 Sum_probs=88.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEEcccCCCEEEEEEcCCCCEEEEEeCCC
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~---------------~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg 619 (743)
.....|++|+....+||+|+.||.++|..+.+.. .-.+++||.+.|.-+.|+.....|-|+..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4568899999999999999999999999765411 1246789999999999999888999999999
Q ss_pred eEEEEECCCCCeeEE-EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 620 TVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 620 ~VrvWDl~~~~~~l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
.|.||-+-++..+-. .-....+.|.+++|..+|..+ +..-.||.|.|=.+.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVD 145 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeec
Confidence 999999887664322 122345778999999988743 345556655554443
No 306
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.74 E-value=0.0033 Score=68.95 Aligned_cols=103 Identities=14% Similarity=0.009 Sum_probs=78.5
Q ss_pred CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeEEEEecC-------
Q 004603 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 639 (743)
Q Consensus 577 g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~----------Dg~VrvWDl~~~~~~l~~l~~h------- 639 (743)
++|.|.|..+.+.+.++..-..+- .+ ++|+++.|+.+.. +..|.+||+.+.+. +..+.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 789999999999888886433332 24 8999998876655 88999999999775 5555421
Q ss_pred CCCeEEEEEecCCCcEEEEEeC-CCcEEEEECCCCeeeEEEecc
Q 004603 640 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 640 ~~~V~sl~fsp~g~~lL~Sgs~-Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
......++++|+|++++++--. +..|.|+|+.+++.+..+...
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 1223478999999988877644 899999999999988877643
No 307
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.0019 Score=72.03 Aligned_cols=200 Identities=16% Similarity=0.139 Sum_probs=112.1
Q ss_pred ccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE
Q 004603 534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613 (743)
Q Consensus 534 ~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La 613 (743)
..+||...|.....+.++++....-.-+.||.|++++|.-..| .|.||+..+..++..-.-.-..|....|+|.+.+||
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 3445555555445555554444444567899999999887764 688888765433321111223344445555444332
Q ss_pred EEeC---------------------------------------------------------CCeEEEEECCCCCeeEEEE
Q 004603 614 TSSA---------------------------------------------------------DRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 614 Sgs~---------------------------------------------------------Dg~VrvWDl~~~~~~l~~l 636 (743)
-=.. -..+-|+.++....++...
T Consensus 363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v 442 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV 442 (698)
T ss_pred EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence 2110 0012222233222222222
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCC-C---eeeEEEe--ccCceeeecCCCEEEEEec---CCeEEE
Q 004603 637 TGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINN-G---SCAGVFK--VCNLMPIILKGCFILNSIF---NCYLLL 705 (743)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~t-g---~~v~~~~--~~~~i~~s~~g~~l~sgs~---Dg~I~v 705 (743)
. ....|...+|.|.|..+.+-.+.+ .+|++|-+.+ . +.+..+. ..+.+.++|.|.+++.+.. .|.+.+
T Consensus 443 e-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 443 E-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred e-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEE
Confidence 2 345678889999998765544433 4789998873 2 2334443 2456889999999988754 566776
Q ss_pred Eeccc------------ceEEEEecCCCCEEEEEeCCCeEEE
Q 004603 706 HRIFL------------NLLSVSEWCNPDEISTSSWKDSCCS 735 (743)
Q Consensus 706 h~~~v------------~~l~v~~~~~~~~laSgs~DG~V~i 735 (743)
.+... ....+.+++.+.++++++.-.+.++
T Consensus 522 ~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 522 YDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred EecchhhhhhccCccccccccceECCCCCEEEEeeehhhhcc
Confidence 55442 1122333444889999887665443
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.0021 Score=74.00 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=139.4
Q ss_pred CCCCceEEEEecCCC-ccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004603 478 GASSKSLLMFGSDGM-GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 478 ~s~~~s~~~fs~dg~-~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
+...+..+.|.|... ..+.+++ ...-+++++...|.|-+|++... ..+..+..|.+
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~----~~~lliAsaD~~GrIil~d~~~~-------------------s~~~~l~~~~~ 110 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPS----SSQLLIASADISGRIILVDFVLA-------------------SVINWLSHSND 110 (1062)
T ss_pred CccceeEEEeccCCCchhccCcc----ccceeEEeccccCcEEEEEehhh-------------------hhhhhhcCCCc
Confidence 456888899998765 2222211 13467889999999999966443 23455677888
Q ss_pred CeEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC-
Q 004603 557 KVESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 630 (743)
Q Consensus 557 ~V~siafsp---dg-~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~- 630 (743)
+|..++|-+ +. .+|+.-..-.+|.+|+.++|+.+-....-.....|++++| |.+.|+.-+..|.|.+-+.-..+
T Consensus 111 ~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se 190 (1062)
T KOG1912|consen 111 SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE 190 (1062)
T ss_pred chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence 899999976 33 4556556678999999999998877766667788899999 66777777778887777653211
Q ss_pred -----eeEEEEecCCC----------------C---------eEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe
Q 004603 631 -----YSLRTFTGHST----------------T---------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 631 -----~~l~~l~~h~~----------------~---------V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~ 680 (743)
..+..-..|.+ . ...++|+|.-+++++.. ....+.|+|++-..|+.+..
T Consensus 191 p~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvp 269 (1062)
T KOG1912|consen 191 PDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVP 269 (1062)
T ss_pred CCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEE
Confidence 11111112221 1 11356788766655433 35689999999888887776
Q ss_pred ccCc----eeeecCCC--EEEEEecCCeEEEEe
Q 004603 681 VCNL----MPIILKGC--FILNSIFNCYLLLHR 707 (743)
Q Consensus 681 ~~~~----i~~s~~g~--~l~sgs~Dg~I~vh~ 707 (743)
.... +.+.|+++ .+++...||.+.+|.
T Consensus 270 ier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 270 IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred eccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 5433 45666654 689999999998864
No 309
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.62 E-value=0.011 Score=73.12 Aligned_cols=178 Identities=14% Similarity=0.144 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEE----cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004603 558 VESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 558 V~siafspdg~~LaSgs~---Dg~V~IWd~~t~~~i~~l----~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~ 630 (743)
-.+++|.|.|++||+.-. ...|.+|- ++|-.-..| ......|..+.|++++..||....|. |.+|-..+-.
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 457899999999999864 33455554 333322222 23456799999999999999977665 9999887754
Q ss_pred eeEE-EEec-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE--eccCceeeecCCCEEEEEecCCeEEE-
Q 004603 631 YSLR-TFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KVCNLMPIILKGCFILNSIFNCYLLL- 705 (743)
Q Consensus 631 ~~l~-~l~~-h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~--~~~~~i~~s~~g~~l~sgs~Dg~I~v- 705 (743)
.-++ .+.- ....+..+.|+|..+..|...+.++.+.++++.-......- ....++....||+.+........+.-
T Consensus 337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP 416 (928)
T PF04762_consen 337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP 416 (928)
T ss_pred EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCc
Confidence 3222 2321 22345569999998887777777677777665421111000 00122344455555444433322211
Q ss_pred ------EecccceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603 706 ------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 706 ------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd 737 (743)
-........+.+..++..+++...||.|.+|.
T Consensus 417 PMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 417 PMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred hHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 11112233333333355688899999888886
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=6.1e-05 Score=87.06 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=110.6
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CC-eE
Q 004603 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR-TV 621 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg-~V 621 (743)
.++..++|+.|+...+||+|+-+.++|+.|+..|.|++|++.+|........|...|+.|.=+.+|...++.+. .. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 45667788899999999999999999999999999999999999999999999999999987778877665544 33 57
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE-ecc-------CceeeecCCCE
Q 004603 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KVC-------NLMPIILKGCF 693 (743)
Q Consensus 622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~-~~~-------~~i~~s~~g~~ 693 (743)
-+|++.....++++|.+ ..++.|+.....-++.+. ...+.|||+.++..+.++ .+. +...|+|+...
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~-~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTE-ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhccc-ccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89998764444555553 456788765333333333 346899999998766553 221 33557777776
Q ss_pred EEEE
Q 004603 694 ILNS 697 (743)
Q Consensus 694 l~sg 697 (743)
|+.-
T Consensus 1245 Ilnd 1248 (1516)
T KOG1832|consen 1245 ILND 1248 (1516)
T ss_pred EeeC
Confidence 6543
No 311
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.58 E-value=0.011 Score=65.66 Aligned_cols=157 Identities=10% Similarity=0.023 Sum_probs=103.9
Q ss_pred CCeEEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-----------
Q 004603 556 SKVESCHFSPDG--KLLAT-----GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------- 617 (743)
Q Consensus 556 ~~V~siafspdg--~~LaS-----gs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~----------- 617 (743)
..|....|+|.+ ..||. .+.++.++||.+.....+.+-.-....=..+.|++.|++|+.--.
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 458888999953 33443 356788999998765555433222222246778888876643211
Q ss_pred CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEE-EEEeCCCcEEEEECCCCeeeEEEec--cCceeeecCCCEE
Q 004603 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGVFKV--CNLMPIILKGCFI 694 (743)
Q Consensus 618 Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL-~Sgs~Dg~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l 694 (743)
...+.++++....+ .......++|.+++|.|.+..+. ++|-.+..+.++|++.. .+..+.. .+.+.|+|.++|+
T Consensus 254 esnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~i 330 (561)
T COG5354 254 ESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYI 330 (561)
T ss_pred cceEEEEeeccccc--ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEE
Confidence 34578888885443 33335678999999999877654 45567889999999966 4444432 3557899999999
Q ss_pred EEEecC---CeEEEEecccceEEE
Q 004603 695 LNSIFN---CYLLLHRIFLNLLSV 715 (743)
Q Consensus 695 ~sgs~D---g~I~vh~~~v~~l~v 715 (743)
+.++.| |.+.+|+...+...+
T Consensus 331 l~agF~nl~gni~i~~~~~rf~~~ 354 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRFKVA 354 (561)
T ss_pred EEecCCccccceEEeccCCceEEE
Confidence 998776 456676665544443
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.56 E-value=0.042 Score=57.10 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=91.1
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCee-EEE
Q 004603 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYS-LRT 635 (743)
Q Consensus 559 ~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafs-p~~~~LaSgs~Dg~VrvWDl~~~~~~-l~~ 635 (743)
.+++|.+ ++.++++-...+.|..|+..++.... +.... ...+++. ++ ..|+.+..++ +.++|+.++... +..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 3688998 77788887788999999998876543 32222 6677777 56 4555555544 455598876532 122
Q ss_pred Ee--c-CCCCeEEEEEecCCCcEEEEEeCC--------CcEEEEECCCCeeeEEEe---ccCceeeecCCCEEEE-EecC
Q 004603 636 FT--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFK---VCNLMPIILKGCFILN-SIFN 700 (743)
Q Consensus 636 l~--~-h~~~V~sl~fsp~g~~lL~Sgs~D--------g~IrvWDl~tg~~v~~~~---~~~~i~~s~~g~~l~s-gs~D 700 (743)
.. . ....++++++.|+|. ++++.... |.|..++.. ++...... ..+.+++++++..|+. -+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 21 1 335688999999987 66565533 557888877 55443333 3466999999997764 4556
Q ss_pred CeEEEEe
Q 004603 701 CYLLLHR 707 (743)
Q Consensus 701 g~I~vh~ 707 (743)
+.|...+
T Consensus 156 ~~i~~~~ 162 (246)
T PF08450_consen 156 GRIWRFD 162 (246)
T ss_dssp TEEEEEE
T ss_pred ceeEEEe
Confidence 6655543
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.012 Score=68.85 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=114.2
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC-eEEEEEcCCCCEEEEEeCCCc-----EE
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDKK-----AV 580 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~-V~siafspdg~~LaSgs~Dg~-----V~ 580 (743)
..|+-|+.||.|.+. ...+..+..+..+... |..+....+..+|++-+.|+. |+
T Consensus 36 ~~vvigt~~G~V~~L--------------------n~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 36 GSVVIGTADGRVVIL--------------------NSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred ceEEEeeccccEEEe--------------------cccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence 578889999888887 2234455666776666 444433334467888777754 89
Q ss_pred EEECCCC------eEE--EEEcc-----cCCCEEEEEEcCCCCEEEEEeCCCeEEEEE--CCCCCee-EEEEecCCCCeE
Q 004603 581 LWCTESF------TVK--STLEE-----HTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYS-LRTFTGHSTTVM 644 (743)
Q Consensus 581 IWd~~t~------~~i--~~l~~-----H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD--l~~~~~~-l~~l~~h~~~V~ 644 (743)
|||++.. .++ ..+.+ ...++.+++.+.+-..+|+|-.||.|.++. +...+.. ......-..+|+
T Consensus 96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 9998642 233 12222 256788999999988999999999999984 3221211 222223457899
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEECCCCeee-EEEecc--Cc--eeeecCCCE-EEEEecCCeEEEEecccceEEEEec
Q 004603 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKVC--NL--MPIILKGCF-ILNSIFNCYLLLHRIFLNLLSVSEW 718 (743)
Q Consensus 645 sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v-~~~~~~--~~--i~~s~~g~~-l~sgs~Dg~I~vh~~~v~~l~v~~~ 718 (743)
.+.|..++.-+++.+. -..|.+|.+....+. ..+..+ +. ..++ ++.+ +++++. ..+.+++......++.+.
T Consensus 176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~-~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFS-DGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecC-CCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 9999988876444444 347999999844322 223322 11 2222 3333 444333 346666666655555554
No 314
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.49 E-value=0.014 Score=72.21 Aligned_cols=183 Identities=11% Similarity=0.077 Sum_probs=117.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004603 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 553 ~H~~~V~siafspdg~~LaSgs~Dg~V~IW----d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~ 628 (743)
...+.|.++.|-++...++.+..+|.|.++ |..+... .....-...|.|++|+||+..|+..+.+++|.+.+-.=
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345779999999999999999999999999 5554332 22222356799999999999999998899887764210
Q ss_pred -------------CC-eeE---------------------------------EEEecCCCCeEEEEEecCCCcEEEEEe-
Q 004603 629 -------------PD-YSL---------------------------------RTFTGHSTTVMSLDFHPSKEDLLCSCD- 660 (743)
Q Consensus 629 -------------~~-~~l---------------------------------~~l~~h~~~V~sl~fsp~g~~lL~Sgs- 660 (743)
+. ..+ ..+. +.+.-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 00 000 0011 2334567899999986655443
Q ss_pred -CC---CcEEEEECCCCeeeEEEec----cCceeeecCCCEEEEEec---CCeEEE-------Ee--------cccceEE
Q 004603 661 -NN---SEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIF---NCYLLL-------HR--------IFLNLLS 714 (743)
Q Consensus 661 -~D---g~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~l~sgs~---Dg~I~v-------h~--------~~v~~l~ 714 (743)
.+ ..||||+-+ |....+... ...++|-|.|++|++.-. ...|.+ |. ....+..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 22 579999966 665444432 245789999999998754 222333 11 1123344
Q ss_pred EEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 715 VSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 715 v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+.+.++...|+..-.|. |.+|-..
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEee
Confidence 44444466676655554 9999544
No 315
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.45 E-value=0.018 Score=63.96 Aligned_cols=172 Identities=18% Similarity=0.150 Sum_probs=110.6
Q ss_pred ccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCeEEEEEcccCCCE
Q 004603 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVKSTLEEHTQWI 600 (743)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs-----------~Dg~V~IWd~~t~~~i~~l~~H~~~V 600 (743)
...+++....+........++.. =..+.|.+.|++|+.-- .+..+.|+++.. ..+....+-.+.|
T Consensus 202 a~~~i~sIp~~s~l~tk~lfk~~---~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pV 277 (561)
T COG5354 202 AMVRILSIPKNSVLVTKNLFKVS---GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPV 277 (561)
T ss_pred cEEEEEEccCCCeeeeeeeEeec---ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccc
Confidence 34444444444333333333322 23577888887655321 124566777663 3333333568899
Q ss_pred EEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEECCCC-ee
Q 004603 601 TDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNG-SC 675 (743)
Q Consensus 601 ~~vafsp~~~~LaSgs--~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs--~Dg~IrvWDl~tg-~~ 675 (743)
...+|.|.++.|++++ .+-.+.++|++.. ++ +......=..+.|+|.++++|+.|- .-|.|-+||.... ++
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LR-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccc---eE-EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 9999999888776655 5889999999864 22 2233445567889999988886543 2367999998765 45
Q ss_pred eEEEeccC--ceeeecCCCEEEEEec------CCeEEEEecccc
Q 004603 676 AGVFKVCN--LMPIILKGCFILNSIF------NCYLLLHRIFLN 711 (743)
Q Consensus 676 v~~~~~~~--~i~~s~~g~~l~sgs~------Dg~I~vh~~~v~ 711 (743)
+..+.+.. .+.|+|+|.|+.+... |..+++|+....
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 54666543 3569999999887743 777888887653
No 316
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.41 E-value=0.031 Score=62.57 Aligned_cols=170 Identities=9% Similarity=-0.057 Sum_probs=99.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEE-EEEcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC--C
Q 004603 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS--T 641 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~-vafsp--~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~--~ 641 (743)
+..++.+..++.|..+|..+++.+-.+......+.. ..-+| .+..++.++.++.|..+|..+++. +....-.. .
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~-~W~~~~~~~~~ 238 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL-IWQQRISQPTG 238 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh-hheeccccCCC
Confidence 345667778899999999999987666432111100 00122 134577778899999999988764 33221100 0
Q ss_pred -----CeEEEEEec--CCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEE
Q 004603 642 -----TVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLS 714 (743)
Q Consensus 642 -----~V~sl~fsp--~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~ 714 (743)
....+...| .+..++ .++.++.+..+|+.+|+.+..............+..++.++.++.+...+.......
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVY-ALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred ccchhcccccCCCcEEECCEEE-EEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEE
Confidence 001111112 133344 566789999999999988766543322223445667777777777766444322222
Q ss_pred EEec-----------CCCCEEEEEeCCCeEEEeCC
Q 004603 715 VSEW-----------CNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 715 v~~~-----------~~~~~laSgs~DG~V~iWd~ 738 (743)
|... ...+.|+.++.||.|++.|.
T Consensus 318 W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 318 WSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred EcccccCCCcccCCEEECCEEEEEeCCCEEEEEEC
Confidence 2111 11568888999999887764
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.38 E-value=0.026 Score=60.27 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=96.9
Q ss_pred eEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCeEEEEEcccCCCE--EEEEEcCCCCEEEEEe-----CCCeEEEEECCC
Q 004603 558 VESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSS-----ADRTVRVWDTEN 628 (743)
Q Consensus 558 V~siafsp-dg~~LaSgs~Dg~-V~IWd~~t~~~i~~l~~H~~~V--~~vafsp~~~~LaSgs-----~Dg~VrvWDl~~ 628 (743)
...++.+| ++..++.+-.-|+ ..+||+.+++....+....+.- -..+|++||++|++.= ..|.|-|||+..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 6667778877776 6789999998887775544332 2467999999998863 367899999995
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCcEEEEEe-----------------CCCcEEEEECCCCeeeEEEec----c----C
Q 004603 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKV----C----N 683 (743)
Q Consensus 629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs-----------------~Dg~IrvWDl~tg~~v~~~~~----~----~ 683 (743)
.-..+.++..|.-....|.+.|+|+.|++.-+ -+-.+.+.|..+|+.+..... + .
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 55557788888777888999999976665432 112566667788887766443 1 2
Q ss_pred ceeeecCCCEEEEE
Q 004603 684 LMPIILKGCFILNS 697 (743)
Q Consensus 684 ~i~~s~~g~~l~sg 697 (743)
.+++..+|..++..
T Consensus 167 HLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 167 HLAVDGDGTVAFAM 180 (305)
T ss_pred eEEecCCCcEEEEE
Confidence 24555555544444
No 318
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.38 E-value=0.0019 Score=66.28 Aligned_cols=136 Identities=11% Similarity=-0.091 Sum_probs=87.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec----cC
Q 004603 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CN 683 (743)
Q Consensus 608 ~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----~~ 683 (743)
...+|+.|+.-|.+.+|...+..........|...|+-+.=.-+...-+.-++.|.+++++++.-+.....+.. ..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 35688999999999999998765434444434433322211111112233577788888888775433222221 34
Q ss_pred ceeeecCCCEEEEEecCCeEEEEecc---------------cceEEEEecCCCCEEEEEeCCCeEEEeCCCcccC
Q 004603 684 LMPIILKGCFILNSIFNCYLLLHRIF---------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELYLYT 743 (743)
Q Consensus 684 ~i~~s~~g~~l~sgs~Dg~I~vh~~~---------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~~~t 743 (743)
.+.+++++.|+++.+....|-.+.+. ...++.++......+|++.-||+|.|||-+|.-|
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 57788999999988877666553222 2334455555577899999999999999998754
No 319
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00083 Score=76.05 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~-~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~ 634 (743)
-.|.-+.|+|...+||++..+|.|.+..+. ...+.++.-|...|+ +++|.|||+.|+.|-.||+|++.|+.++.....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 347889999999999999999999999887 777888887777777 999999999999999999999999998776333
Q ss_pred EEecCCCCeEEEEEec
Q 004603 635 TFTGHSTTVMSLDFHP 650 (743)
Q Consensus 635 ~l~~h~~~V~sl~fsp 650 (743)
........|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2233455677777764
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.30 E-value=0.02 Score=69.44 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=73.7
Q ss_pred EEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCC
Q 004603 559 ESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPD 630 (743)
Q Consensus 559 ~siafspdg~~LaSg-----s~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs---~Dg~VrvWDl~~~~ 630 (743)
+.|+|--||.+||+. ...++|+|||-+ +..-.+-+.-.+.=.+++|-|.|..+++-. .|+.|.+|.-. |-
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL 276 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GL 276 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-Cc
Confidence 469999999999883 333899999976 433322222233446899999999887764 36678888733 22
Q ss_pred e---eEEEEecCCCCeEEEEEecCCCcEEEE---EeCCCcEEEEECCCCe
Q 004603 631 Y---SLRTFTGHSTTVMSLDFHPSKEDLLCS---CDNNSEIRYWSINNGS 674 (743)
Q Consensus 631 ~---~l~~l~~h~~~V~sl~fsp~g~~lL~S---gs~Dg~IrvWDl~tg~ 674 (743)
. .+..+......|..|+|+.++. +|+. +.....|++|-+.+..
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 1 0111222233489999999876 5544 4444459999988764
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.29 E-value=0.00011 Score=82.75 Aligned_cols=182 Identities=11% Similarity=0.056 Sum_probs=124.7
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeE--EEEEcccCCCEEEEEEcC-CCCEEEEEeC----CCeEEEEE
Q 004603 555 TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSA----DRTVRVWD 625 (743)
Q Consensus 555 ~~~V~siafsp--dg~~LaSgs~Dg~V~IWd~~t~~~--i~~l~~H~~~V~~vafsp-~~~~LaSgs~----Dg~VrvWD 625 (743)
+-.+.|+++.- +...++.|..+|.|.+-.++...- -.+..+|...+++++|++ |.+.||.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34477888765 445889999999999988765321 334567888999999998 5667777643 67899999
Q ss_pred CCCCC----eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe-eeEEE--eccCceeeec-CCCEEEEE
Q 004603 626 TENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF--KVCNLMPIIL-KGCFILNS 697 (743)
Q Consensus 626 l~~~~----~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~-~v~~~--~~~~~i~~s~-~g~~l~sg 697 (743)
+.+.- .......+......++||..+. .++.+|.....|+++|+|... ....+ +.+..+.+.| .+.|+++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence 97641 1111112244567789999664 477789988899999999321 11111 2355677887 77787776
Q ss_pred ecCCeEEEEecc--------------------cceEEEEecCCCCEEEEEeCCC-eEEEeCCC
Q 004603 698 IFNCYLLLHRIF--------------------LNLLSVSEWCNPDEISTSSWKD-SCCSHREL 739 (743)
Q Consensus 698 s~Dg~I~vh~~~--------------------v~~l~v~~~~~~~~laSgs~DG-~V~iWd~~ 739 (743)
. |+.|.+|+.. +..+++++.. .+.++++..|. +|+.+|-.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr-tglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR-TGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC-cchhhhhccCcceEEEeccc
Confidence 6 8999998821 3467777776 67777777654 78877644
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.29 E-value=0.056 Score=60.49 Aligned_cols=165 Identities=9% Similarity=-0.008 Sum_probs=97.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCC-------CEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004603 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~-------~V~~vafsp--~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~ 638 (743)
..++.++.++.+..+|..+++.+-....... ....+..+| .+..++.++.++.+..+|+.+++. +....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~- 283 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKRE- 283 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeec-
Confidence 3566677889999999988876544321100 011111233 255677788899999999998875 33322
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC-c--eeeecCCCEEEEEecCCeEEEEecccceEEE
Q 004603 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-L--MPIILKGCFILNSIFNCYLLLHRIFLNLLSV 715 (743)
Q Consensus 639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~-~--i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v 715 (743)
......+... +..++ .++.|+.|..+|..+|+.+....... . ..-...+.+|+.++.||.+.+.+.....+.+
T Consensus 284 -~~~~~~~~~~--~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 284 -YGSVNDFAVD--GGRIY-LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred -CCCccCcEEE--CCEEE-EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 1112223332 33344 56679999999999998765443211 1 1111246677888888888764432222111
Q ss_pred E-----------ecCCCCEEEEEeCCCeEEEeCC
Q 004603 716 S-----------EWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 716 ~-----------~~~~~~~laSgs~DG~V~iWd~ 738 (743)
. +...++.|+.++.||.|+.++.
T Consensus 360 ~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 360 QQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 1 1112568888999999887754
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.0037 Score=72.58 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=91.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~ 634 (743)
.+.++|++++ +++|+-|..+|.|++++... .+ .+...|+.. +-+|.+++||+.||+|.|..+.+... ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 3558888885 67999999999999999753 33 344445543 55799999999999999999888765 33
Q ss_pred EEecCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEECCCCeeeE--EEec--cCceeeecCCCEEEEEecCCe
Q 004603 635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAG--VFKV--CNLMPIILKGCFILNSIFNCY 702 (743)
Q Consensus 635 ~l~~h~~~V~sl~fsp~----g~~lL~Sgs~Dg~IrvWDl~tg~~v~--~~~~--~~~i~~s~~g~~l~sgs~Dg~ 702 (743)
++. -..++.+|+++|+ ....+++|+.-| +.++.-+--.... .+.. ....++.-.|.+++-++.+|.
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv 181 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGV 181 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCc
Confidence 333 3467899999998 223566888777 7776543211111 1111 122445667788887777764
No 324
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.001 Score=45.56 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.6
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD 625 (743)
++++..+..|...|.+++|++.+..+++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355677778999999999999889999999999999996
No 325
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.19 E-value=0.041 Score=57.46 Aligned_cols=109 Identities=7% Similarity=-0.014 Sum_probs=63.4
Q ss_pred CceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEE
Q 004603 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (743)
Q Consensus 481 ~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~s 560 (743)
.-+-+.|+||+ .+++.....|+|++|+.....-...... .. ....-+..|..
T Consensus 45 QWRkl~WSpD~---------------tlLa~a~S~G~i~vfdl~g~~lf~I~p~------~~-------~~~d~~~Aiag 96 (282)
T PF15492_consen 45 QWRKLAWSPDC---------------TLLAYAESTGTIRVFDLMGSELFVIPPA------MS-------FPGDLSDAIAG 96 (282)
T ss_pred hheEEEECCCC---------------cEEEEEcCCCeEEEEecccceeEEcCcc------cc-------cCCccccceee
Confidence 55678888888 4888888899999996543211000000 00 00112344666
Q ss_pred EEEcCC------CCEEEEEeCCCcEEEEECCC-----CeEEEEE--cc-cCCCEEEEEEcCCCCEEEEEeC
Q 004603 561 CHFSPD------GKLLATGGHDKKAVLWCTES-----FTVKSTL--EE-HTQWITDVRFSPSLSRLATSSA 617 (743)
Q Consensus 561 iafspd------g~~LaSgs~Dg~V~IWd~~t-----~~~i~~l--~~-H~~~V~~vafsp~~~~LaSgs~ 617 (743)
+.|.+- ...|++-..+|.++-|-+.. .....+| .. +...|.++.|+|..++|+.|+.
T Consensus 97 l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 97 LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred eEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 666441 12355556777777665422 2223333 22 4678999999998888777664
No 326
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.19 E-value=0.00098 Score=45.68 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=33.8
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd 583 (743)
.....+..|...|.++.|++++.++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778999999999999999999999999999996
No 327
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0026 Score=70.95 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=91.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-----------CCeEEEEECC
Q 004603 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 627 (743)
Q Consensus 559 ~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-----------Dg~VrvWDl~ 627 (743)
+-+.|||.|.+|+|-..-| |.+|--.+...++.|. |.+ |.-+.|+|+.++|+|=+. ...++|||++
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 4689999999999988665 8899887777666664 654 889999999999998764 2568999999
Q ss_pred CCCeeEEEEecC--CCCe-EEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE----EEeccCceeeecCCCEEEEE
Q 004603 628 NPDYSLRTFTGH--STTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKVCNLMPIILKGCFILNS 697 (743)
Q Consensus 628 ~~~~~l~~l~~h--~~~V-~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~----~~~~~~~i~~s~~g~~l~sg 697 (743)
++.. .+.|... ...+ .-+.|+-|+. +++.-. ...|.||+..+-..+. .+.+...+.++|.+..|+-.
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdK-y~Arm~-~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDK-YFARMT-GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCc-eeEEec-cceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence 9875 5555431 1222 3468888876 443333 3579999877644331 12233445666666655544
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.15 E-value=0.011 Score=67.05 Aligned_cols=172 Identities=13% Similarity=0.190 Sum_probs=94.2
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE-CCCC
Q 004603 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENP 629 (743)
Q Consensus 551 l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD-l~~~ 629 (743)
+....-....+.++|+|+++++++ ||.-.|+.....+.... +.....+|.+. ..+|+-....+|.++. +...
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccc
Confidence 334444578999999999998854 78888888555444332 22346778884 5577777789999963 3221
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc--CceeeecCCCEEEEEecCCeEEEEe
Q 004603 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~l~sgs~Dg~I~vh~ 707 (743)
. ...+.- ...+..|-. |. +|+..+ ++.|.+||..+++.++.+... ..+.|+++|.+++..+.+....+ +
T Consensus 101 ~--~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il-~ 171 (443)
T PF04053_consen 101 V--VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYIL-K 171 (443)
T ss_dssp T--T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEE-E
T ss_pred c--ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEE-E
Confidence 1 122221 122444433 55 443444 347999999999999999865 46889999999999987755444 2
Q ss_pred cccc------------eEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 708 IFLN------------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 708 ~~v~------------~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.... .+.+...- ...+-||-|++.|.+|.+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d~fiYtT~ 214 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVEDCFIYTTS 214 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETTEEEEE-T
T ss_pred ecchhcccccccCchhceEEEEEe-cceeEEEEEEcCEEEEEcC
Confidence 2222 33332210 3468888888888777543
No 329
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.08 E-value=0.00076 Score=47.32 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHhcCCCC
Q 004603 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (743)
Q Consensus 9 ~~~l~~yiy~yl~k~~~~~~A~~~~~e~~~~ 39 (743)
+..|+..|++||.+.||.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5678999999999999999999999998764
No 330
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.017 Score=63.34 Aligned_cols=105 Identities=14% Similarity=0.179 Sum_probs=77.6
Q ss_pred eCCCcEEEEECCCC--eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CCe-e---------EEEEe
Q 004603 574 GHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN----PDY-S---------LRTFT 637 (743)
Q Consensus 574 s~Dg~V~IWd~~t~--~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~----~~~-~---------l~~l~ 637 (743)
-.++.|.|+|-... +....-.-|..+|.++.+++.++.+++....|.|..|.... ++. . +..+.
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP 198 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence 45788999986543 23333456999999999999999999999999999999872 110 0 11222
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~ 679 (743)
.......+++|+|++.. +.+-..|..||++++++|+.+..+
T Consensus 199 K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 199 KAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhh
Confidence 34466789999999874 446668999999999999866554
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.03 E-value=0.54 Score=52.72 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=97.4
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE--cc------cCCCEEEEEEcC-----CC-
Q 004603 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 609 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l--~~------H~~~V~~vafsp-----~~- 609 (743)
.+.+...+....++|++|+.| |=-++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 466777788889999999997 5669999999999999999887776542 22 245688888863 22
Q ss_pred --CEEEEEeCCCeEEEEECCC---CCeeE---EEEecCCCCeEEEE-EecC--------------------CCcEEEEEe
Q 004603 610 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPS--------------------KEDLLCSCD 660 (743)
Q Consensus 610 --~~LaSgs~Dg~VrvWDl~~---~~~~l---~~l~~h~~~V~sl~-fsp~--------------------g~~lL~Sgs 660 (743)
-++++|...|.+.+|.+.- +...+ .....+.+.|..++ |+.+ .+.+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3688999999999998752 12211 12224566676665 3221 123555565
Q ss_pred CCCcEEEEECCCCeeeEEEecc----Cceee-----ecCCCEEEEEecCCeEEEEecc
Q 004603 661 NNSEIRYWSINNGSCAGVFKVC----NLMPI-----ILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~~v~~~~~~----~~i~~-----s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
+..|||+...+.+..+..... ..+.+ ...+..|++-..+|.+++....
T Consensus 234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 668999999988776655422 11233 2356778888999999996654
No 332
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.02 E-value=0.022 Score=51.68 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=68.2
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 004603 558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (743)
Q Consensus 558 V~siafsp---dg-~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l 633 (743)
|+++++.. || +.|++|+.|..||||+-+ +.+..+.+ ++.|++++-... ..|+.+..+|+|-+|+-... +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce---e
Confidence 56666654 33 479999999999999854 56666665 455777766554 67999999999999985431 3
Q ss_pred EEEecCCCCeEEEEEe---cCCCcEEEEEeCCCcEEE
Q 004603 634 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIRY 667 (743)
Q Consensus 634 ~~l~~h~~~V~sl~fs---p~g~~lL~Sgs~Dg~Irv 667 (743)
...+.. ..++++++. -+|..-|++|-.+|.|-+
T Consensus 75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 333332 335555543 344445668887887643
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.97 E-value=0.026 Score=65.47 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=86.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-----CeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe-------
Q 004603 565 PDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY------- 631 (743)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWd~~t-----~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~------- 631 (743)
++|++...+ +++|.+.|..+ .+.+..+.. ......|+++|||+++++++. +.+|.|.|+.+.+.
T Consensus 286 kdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 367766553 67899999987 344544433 455788999999998876654 99999999987442
Q ss_pred ---e-EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC----------CeeeEEEecc-----Cc----eeee
Q 004603 632 ---S-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----------GSCAGVFKVC-----NL----MPII 688 (743)
Q Consensus 632 ---~-l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t----------g~~v~~~~~~-----~~----i~~s 688 (743)
+ +.... -.......+|.++|. .++|...|..|..||+.. ...+..+..| .. -...
T Consensus 363 ~~~~vvaeve-vGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~ 440 (635)
T PRK02888 363 PRDAVVAEPE-LGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKE 440 (635)
T ss_pred ccceEEEeec-cCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCC
Confidence 1 11111 123345678998875 788889999999999876 2333333322 11 1235
Q ss_pred cCCCEEEEEe
Q 004603 689 LKGCFILNSI 698 (743)
Q Consensus 689 ~~g~~l~sgs 698 (743)
++|+||++..
T Consensus 441 ~dgk~l~~~n 450 (635)
T PRK02888 441 ADGKWLVSLN 450 (635)
T ss_pred CCCCEEEEcc
Confidence 8999998864
No 334
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=0.00058 Score=79.29 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=98.4
Q ss_pred CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC-cE
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 665 (743)
Q Consensus 587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg-~I 665 (743)
.+..++|+.|+...+|++|+-+.++|+.|+..|.|++|++.++.. .....+|.+.|+-|.=+.+|..+|.+++... ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 456678889999999999999999999999999999999999876 6677889999999999999988776666555 57
Q ss_pred EEEECCC-CeeeEEEeccCceeeecCCCEEEEEecCCeEEEEecc
Q 004603 666 RYWSINN-GSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 666 rvWDl~t-g~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
-+|++.. +..+++|.....+.|+....+-+.|.......+++..
T Consensus 1170 aLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQ 1214 (1516)
T ss_pred HHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecc
Confidence 7899864 6677888888888888766666666655556665543
No 335
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.91 E-value=0.084 Score=54.46 Aligned_cols=113 Identities=9% Similarity=-0.042 Sum_probs=79.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 004603 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl 646 (743)
.++++.|+..+.+.--|..+++.+-.-. -..+|.+-+.- -+++++.|+..|.+++.+..++.. ...+......=...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeehhhhccce
Confidence 4578899999999999998887653221 12334333222 477899999999999999999865 34443222211223
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC
Q 004603 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN 683 (743)
Q Consensus 647 ~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~ 683 (743)
...+++. ++..++.|+..+..|.++..|+...+...
T Consensus 100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred EEcCCCc-eEEEecCCCcEEEecccccceEEecccCC
Confidence 3455654 77799999999999999999998877543
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.90 E-value=0.11 Score=63.35 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=113.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCC
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE----NPD 630 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~----~~~ 630 (743)
.+.|.++.|.-+..-++.+..+|.|.+.|..+..... ..--...|.+++|+||...++-.+.+.+|.+-+-. ...
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3579999999999999999999999999987754332 22235679999999999999888888887765421 000
Q ss_pred e----------e--------EEEEecC---------------------CCCeEEEEEecCCCcEEEEE---eCC-CcEEE
Q 004603 631 Y----------S--------LRTFTGH---------------------STTVMSLDFHPSKEDLLCSC---DNN-SEIRY 667 (743)
Q Consensus 631 ~----------~--------l~~l~~h---------------------~~~V~sl~fsp~g~~lL~Sg---s~D-g~Irv 667 (743)
. . -..|.|. .+.=++|+|--||.++.++. -.+ +.|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0 0 0112111 11224589998987544422 234 78999
Q ss_pred EECCCCeeeEE----EeccCceeeecCCCEEEEE---ecCCeEEE-------Ee-------cc---cceEEEEecCCCCE
Q 004603 668 WSINNGSCAGV----FKVCNLMPIILKGCFILNS---IFNCYLLL-------HR-------IF---LNLLSVSEWCNPDE 723 (743)
Q Consensus 668 WDl~tg~~v~~----~~~~~~i~~s~~g~~l~sg---s~Dg~I~v-------h~-------~~---v~~l~v~~~~~~~~ 723 (743)
||.+ |..-.+ -...+.+.+-|.|..+++- +.|+.|.+ |. .. +..+.|..+ ...
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~--sdi 303 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN--SDI 303 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC--CCc
Confidence 9987 432111 1123457788999988875 34555655 11 11 345556555 445
Q ss_pred EEE---EeCCCeEEEeCCC
Q 004603 724 IST---SSWKDSCCSHREL 739 (743)
Q Consensus 724 laS---gs~DG~V~iWd~~ 739 (743)
++. ......|++|-..
T Consensus 304 LAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred eeeeecccccceEEEEEec
Confidence 555 4555569999654
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.85 E-value=0.029 Score=65.12 Aligned_cols=91 Identities=8% Similarity=0.022 Sum_probs=67.3
Q ss_pred CCeEEEEECCC----CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee------------eEEEec
Q 004603 618 DRTVRVWDTEN----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------------AGVFKV 681 (743)
Q Consensus 618 Dg~VrvWDl~~----~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~------------v~~~~~ 681 (743)
++.|.+.|.++ +.. +..+..-......++++|||.++++++..+.+|.|+|+.+.+. +.....
T Consensus 295 gn~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 56799999887 333 3333334567889999999999999999999999999987552 222221
Q ss_pred ---cCceeeecCCCEEEEEecCCeEEEEecc
Q 004603 682 ---CNLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 682 ---~~~i~~s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
.-...|..+|....+-..|..|..|+..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 2236688888877788889888888854
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.0046 Score=71.82 Aligned_cols=109 Identities=15% Similarity=0.238 Sum_probs=83.9
Q ss_pred EEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603 559 ESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 559 ~siafspdg~~LaSgs~----Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~ 634 (743)
+-+.|+|...+|++++. .|.|.||- ++|++-+..+. .-.+++++|||..-.|++|-.-|.+.+|...+.+. -.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence 34679999999988863 57788873 66665543321 23367799999888889998899999999876443 34
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 635 ~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
....|...|..+.|+++|. .++++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 4456999999999999987 55599999999999765
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.77 E-value=0.0006 Score=77.12 Aligned_cols=114 Identities=19% Similarity=0.388 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEE-CCCCCeeE
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD-TENPDYSL 633 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWD-l~~~~~~l 633 (743)
..+.+++|..+.++|.+|...+.|+++|++- .+...-.-.+..|..+.+.| .+.++++-. ||.|-+|| .++-+.++
T Consensus 155 ~gqns~cwlrd~klvlaGm~sr~~~ifdlRq-s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl 232 (783)
T KOG1008|consen 155 DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ-SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL 232 (783)
T ss_pred cCccccccccCcchhhcccccchhhhhhhhh-hhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence 4466888988889999999999999999872 11112222344566677788 677887765 99999999 55544444
Q ss_pred EEEecCCC----CeEEEEEecCCCcEEEEEeCC-CcEEEEECC
Q 004603 634 RTFTGHST----TVMSLDFHPSKEDLLCSCDNN-SEIRYWSIN 671 (743)
Q Consensus 634 ~~l~~h~~----~V~sl~fsp~g~~lL~Sgs~D-g~IrvWDl~ 671 (743)
..+...+. .+..++|+|....++++++.| ++|+.+|+.
T Consensus 233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 233 QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 44332222 489999999988888888876 579999986
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.16 Score=60.03 Aligned_cols=129 Identities=11% Similarity=0.116 Sum_probs=89.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--C--CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE--S--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~--t--~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~ 629 (743)
...++.+++++.+-+.+|+|-.||.|..+.-+ . +........-..+|+.+++..++..++-...-..|.+|.+...
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 35678999999999999999999999988432 1 2212222223578999999888776444444678999998854
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe-ccCc
Q 004603 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-VCNL 684 (743)
Q Consensus 630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~-~~~~ 684 (743)
...+.++..|...+.|..|++....++|++ +..|.+||......-..|. ++..
T Consensus 204 ~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 204 TPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred CcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeecCCCeE
Confidence 433555777888899999988755466444 3579999988655545555 4443
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.69 E-value=0.41 Score=50.14 Aligned_cols=192 Identities=11% Similarity=0.089 Sum_probs=102.6
Q ss_pred EEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEccc-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004603 549 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 549 ~~l~~H~~~V~siafspd-g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H-~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl 626 (743)
..+.+-...|..|+|+|+ ++++++....+.|..++.+ ++.++.+.-. .+..-.|++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 445555566999999996 4577777778888888864 7777776433 355788898877777776666999999988
Q ss_pred CCCC--ee---EEEEe-----cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC---CeeeEEEe------------c
Q 004603 627 ENPD--YS---LRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK------------V 681 (743)
Q Consensus 627 ~~~~--~~---l~~l~-----~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t---g~~v~~~~------------~ 681 (743)
.... .. +..+. .+...+-.|+|+|.+..++++. +..-.++|.++. ...+.... .
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4322 11 11121 2445689999999988777654 344556665543 22221111 1
Q ss_pred cCceeeecCC-CEEEEEecCCeEEEEecccceEEEEecCC----------CCEEEEEeCCCeEEEeCCCccc
Q 004603 682 CNLMPIILKG-CFILNSIFNCYLLLHRIFLNLLSVSEWCN----------PDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 682 ~~~i~~s~~g-~~l~sgs~Dg~I~vh~~~v~~l~v~~~~~----------~~~laSgs~DG~V~iWd~~~~~ 742 (743)
.+.+.++|.. .+++.......|...+.....+..-.-.. .-.=++-..||+++|-.+..+|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlf 244 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLF 244 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceE
Confidence 1345666654 45555566666666665555444322111 1122344468888887776654
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.67 E-value=0.013 Score=67.47 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=93.3
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
.+.+++.|+.-|.+.+|....+.. ......+..+.+..+..|++..++|.|+..|.|.|+-+
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~------------------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEM------------------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred CCceEEEecccceEEEEecCchhh------------------hcccccCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 458999999999999995544320 11111224455777888999999999999999999876
Q ss_pred CCCeE-----EEEE-cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---CeeEEEEecCCCCeEEEEEecCCCcE
Q 004603 585 ESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDL 655 (743)
Q Consensus 585 ~t~~~-----i~~l-~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~---~~~l~~l~~h~~~V~sl~fsp~g~~l 655 (743)
....+ +..+ ..|...|+|++|++++..|++|...|+|.+-.+... ......+....+.|.-|++.- .++
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~L 183 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYL 183 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--cee
Confidence 54221 1111 237889999999999999999999999998887761 112334444556777777653 345
Q ss_pred EEEEe
Q 004603 656 LCSCD 660 (743)
Q Consensus 656 L~Sgs 660 (743)
|++..
T Consensus 184 LVStl 188 (726)
T KOG3621|consen 184 LVSTL 188 (726)
T ss_pred hHhhh
Confidence 65544
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.66 E-value=0.43 Score=49.42 Aligned_cols=144 Identities=13% Similarity=0.052 Sum_probs=87.1
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004603 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 504 ~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd 583 (743)
+...++..||+.+.+...+...+. -.|+..-+ +.|.|-+.- -|++++.|+..+.+++.+
T Consensus 21 dskT~v~igSHs~~~~avd~~sG~-------~~We~ilg-------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQSGN-------LIWEAILG-------------VRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred CCceEEEEecCCceEEEecCCCCc-------EEeehhhC-------------ceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 335788888888887777554442 12222222 112222221 477899999999999999
Q ss_pred CCCCeEEEEEcccCCCEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603 584 TESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 584 ~~t~~~i~~l~~H~~~V~-~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D 662 (743)
+.++.....|..-.. |. .....+++.++..|+.|++.+..|.++.. |+...+.-.+...+-+..|-...+++ +...
T Consensus 80 ~~tGs~~w~f~~~~~-vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP~i~~g~~sly~-a~t~ 156 (354)
T KOG4649|consen 80 VKTGSQIWNFVILET-VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSPVIAPGDGSLYA-AITA 156 (354)
T ss_pred ecchhheeeeeehhh-hccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccceecCCCceEEE-Eecc
Confidence 999977666643322 22 23347789999999999999999999854 46655433333334455553233443 3334
Q ss_pred CcEEEEECC
Q 004603 663 SEIRYWSIN 671 (743)
Q Consensus 663 g~IrvWDl~ 671 (743)
|.|---..+
T Consensus 157 G~vlavt~~ 165 (354)
T KOG4649|consen 157 GAVLAVTKN 165 (354)
T ss_pred ceEEEEccC
Confidence 444333333
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.72 Score=51.53 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=108.3
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCee
Q 004603 557 KVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYS 632 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~---Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~~~ 632 (743)
....++|+++++.++.+.. +++|.+.|..+.+.+.+...-..+ ..++++|++..++.+. .+++|.+.|......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v- 194 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV- 194 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-
Confidence 4678999999987777765 688999998888877765433334 8899999999766555 799999999776432
Q ss_pred EEE----EecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCCCeeeEE-Eecc----CceeeecCCCEEEEEecC-
Q 004603 633 LRT----FTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGV-FKVC----NLMPIILKGCFILNSIFN- 700 (743)
Q Consensus 633 l~~----l~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~tg~~v~~-~~~~----~~i~~s~~g~~l~sgs~D- 700 (743)
.+. ...-......+.+.|+|.++.++...+ +.|.+.|..++..... +... ..+.+.|+|.++.+....
T Consensus 195 ~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred eccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence 210 112223457799999999888777665 6899999998876654 2222 347788999998887444
Q ss_pred CeEEEEeccc
Q 004603 701 CYLLLHRIFL 710 (743)
Q Consensus 701 g~I~vh~~~v 710 (743)
+.+.+.+...
T Consensus 275 ~~V~vid~~~ 284 (381)
T COG3391 275 GTVSVIDGAT 284 (381)
T ss_pred CeEEEEeCCC
Confidence 6666655443
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.52 E-value=0.87 Score=47.74 Aligned_cols=124 Identities=12% Similarity=0.248 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEEc-----ccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLE-----EHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~------~i~~l~-----~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW 624 (743)
+....|++..++.++++.-.++.+.+++++... ....+. .+...+-.++|+|.+..|+.+-...-.++|
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~ 144 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY 144 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence 447889998888777776668999998883311 111121 244568999999987777777777667777
Q ss_pred ECCC--CCeeEE--EEe------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe
Q 004603 625 DTEN--PDYSLR--TFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 625 Dl~~--~~~~l~--~l~------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~ 680 (743)
.+.. ....+. ... .....+.+++++|...++++-+..+..|.++| .+|+.+..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 6653 111121 111 13345789999999888998999999999999 6687776655
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.52 E-value=0.063 Score=60.69 Aligned_cols=144 Identities=19% Similarity=0.138 Sum_probs=91.7
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEE-EeCCCe--EEEE
Q 004603 552 PASTSKVESCHFSPDGKLLATGG---HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVW 624 (743)
Q Consensus 552 ~~H~~~V~siafspdg~~LaSgs---~D-g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaS-gs~Dg~--VrvW 624 (743)
..-...+..-+|+|++..++... .. ..+.++|+.+++....+. ..+.-..-+|+|||+.|+- ...||. |.++
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 33445577788999888655442 22 358889998876544433 2233346689999987754 455665 5555
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEE--ECCCCeeeEEEe--c--cCceeeecCCCEEEEEe
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--SINNGSCAGVFK--V--CNLMPIILKGCFILNSI 698 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvW--Dl~tg~~v~~~~--~--~~~i~~s~~g~~l~sgs 698 (743)
|+.... +..+..-.+.-+.-.|+|+|..++++.+..|.-.|| |++.+.. ..+. + .....++|+|.+++..+
T Consensus 268 dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 268 DLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred cCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEe
Confidence 776644 333443344444678999999999888888865554 5554443 2222 1 22456889999988776
Q ss_pred c
Q 004603 699 F 699 (743)
Q Consensus 699 ~ 699 (743)
.
T Consensus 345 ~ 345 (425)
T COG0823 345 S 345 (425)
T ss_pred c
Confidence 4
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.50 E-value=0.14 Score=57.68 Aligned_cols=180 Identities=10% Similarity=-0.038 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~------~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~ 629 (743)
+.|.++.|+.+..+| +-..||++++||+.... .+....-....|.++.+..+|-.+++ .++.|.+..-...
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccc
Confidence 789999999866555 55679999999986322 11111111222333333334533333 3444443322111
Q ss_pred CeeEEEEe----------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEec
Q 004603 630 DYSLRTFT----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIF 699 (743)
Q Consensus 630 ~~~l~~l~----------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~ 699 (743)
....+.+. .+........++.+.. +.+....++.|.+.+-...+.+........++++|+|.+++.-..
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~ 236 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTD 236 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 10011110 0111000122333333 223333445566444332211111122345789999999999999
Q ss_pred CCeEEEEecccceE----EEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 700 NCYLLLHRIFLNLL----SVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 700 Dg~I~vh~~~v~~l----~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+|.+.+........ .......+..+.=||.|..+..|.+.
T Consensus 237 ~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~ 280 (410)
T PF04841_consen 237 SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDE 280 (410)
T ss_pred CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCE
Confidence 99887754433211 11111224566666667777777543
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.42 E-value=0.068 Score=64.18 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=89.0
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCeEEEEEcccCCC-EEEEEEcCC-------CCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603 566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPS-------LSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 566 dg~~LaSg-s~Dg~V~IWd~~t~~~i~~l~~H~~~-V~~vafsp~-------~~~LaSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
+.++|+.- ...+.|+-.|++.|+.+..+..|... |..+ .|+ ....+.|-.+..|..||.|-....+..-
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 34444443 45678999999999999999988754 5554 442 3345777789999999998754222211
Q ss_pred ec----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec----cCceeeecCCCEEEEEecCCeEEE
Q 004603 637 TG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 637 ~~----h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~l~sgs~Dg~I~v 705 (743)
.. ......|++-..+| .||.|+.+|.||+||--.......+.+ ...+.++.||+||++.+....+.+
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi 644 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLI 644 (794)
T ss_pred cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEE
Confidence 11 22345666666555 578899999999999433222223333 245778899999888776655444
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.41 E-value=0.021 Score=65.77 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee---
Q 004603 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--- 632 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~-~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~--- 632 (743)
.|.--+++..+++++.|+.-|.|++|+-..++... ...+-.+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 34445556688999999999999999976655432 22334445556677888888899999999999987653221
Q ss_pred -EE-EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603 633 -LR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 633 -l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t 672 (743)
+. .-+.|...|++++|++++..++ +|..-|.|.+-.+..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred eeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 11 1123778899999999987555 999999999888776
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.34 E-value=0.079 Score=63.64 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEECCCCe-EEEEEcc----cCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC
Q 004603 568 KLLATGGHDKKAVLWCTESFT-VKSTLEE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~t~~-~i~~l~~----H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~ 642 (743)
.-.+.|-.++.+..||.+-.. .+..-.. .....+|++-..+ .+||+|+.+|.||+||- .+......+.+-..+
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~p 620 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDP 620 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCC
Confidence 345677778899999988532 2211111 2345677766555 47999999999999993 344445566677899
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004603 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 643 V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl 670 (743)
|.+|+.+.||+++|+||. ..|.+++.
T Consensus 621 I~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 999999999999998885 67888875
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.33 E-value=1.1 Score=51.96 Aligned_cols=105 Identities=6% Similarity=0.003 Sum_probs=64.6
Q ss_pred CCCcEEEEECCCCeEEEEEcccCC--------------------CE-EEEEEcCCCCEEEEEeCCC--------------
Q 004603 575 HDKKAVLWCTESFTVKSTLEEHTQ--------------------WI-TDVRFSPSLSRLATSSADR-------------- 619 (743)
Q Consensus 575 ~Dg~V~IWd~~t~~~i~~l~~H~~--------------------~V-~~vafsp~~~~LaSgs~Dg-------------- 619 (743)
.++.|..+|..+++.+-.+..... .| ...++++.+..++.++.|+
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 467888999999887766543211 01 1234444566777777665
Q ss_pred ----eEEEEECCCCCeeEEEEe--cCCC----CeEEEEEe----cCCC--cEEEEEeCCCcEEEEECCCCeeeEEEe
Q 004603 620 ----TVRVWDTENPDYSLRTFT--GHST----TVMSLDFH----PSKE--DLLCSCDNNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 620 ----~VrvWDl~~~~~~l~~l~--~h~~----~V~sl~fs----p~g~--~lL~Sgs~Dg~IrvWDl~tg~~v~~~~ 680 (743)
.|.-+|+.+++. +..+. .|.. ......+. -++. .+++.++.+|.|...|.++|+.+....
T Consensus 253 ~~~~~l~Ald~~tG~~-~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 253 LYTDSIVALDADTGKV-KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CceeeEEEEcCCCCCE-EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 799999998875 44432 1211 10111111 1222 356678889999999999999887765
No 352
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.17 E-value=1.3 Score=49.64 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCEEEEE-eCC----CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC-----------eE
Q 004603 558 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 621 (743)
Q Consensus 558 V~siafspdg~~LaSg-s~D----g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg-----------~V 621 (743)
+..++++|+|++||.+ +.. .+|+|+|+++++.+........ ...+.|.++++.|+....|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467889999988765 333 3599999999987653321121 23499999988776554433 37
Q ss_pred EEEECCCCCee-EEEEecCCCC--eEEEEEecCCCcEEEEEeCCC---cEEEEECCCC
Q 004603 622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG 673 (743)
Q Consensus 622 rvWDl~~~~~~-l~~l~~h~~~--V~sl~fsp~g~~lL~Sgs~Dg---~IrvWDl~tg 673 (743)
++|++.++... ...+...... ...+..++++.++++...... .|.+.|+..+
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 88888775432 3445443332 568889999998887665444 4888888874
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.06 E-value=0.13 Score=58.32 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=83.9
Q ss_pred EEEEEcCCCCEEE-EEeCCCcE--EEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEE--ECCCCCee
Q 004603 559 ESCHFSPDGKLLA-TGGHDKKA--VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW--DTENPDYS 632 (743)
Q Consensus 559 ~siafspdg~~La-Sgs~Dg~V--~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvW--Dl~~~~~~ 632 (743)
..-+|+|||+.|+ +...|+.. .+.|+.+.. +..+..-.+.-+.-.|+|+|+.|+-.+ ..|.-.|| |++....
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~- 318 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV- 318 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-
Confidence 3578999998665 44566664 555666655 333544344444678999999876554 46654554 5554433
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecC
Q 004603 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFN 700 (743)
Q Consensus 633 l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~--IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~D 700 (743)
..+......-..-.|+|+|+.+++....+|. |.+.|+.++...+.+... ....+.++|..++..+..
T Consensus 319 -~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 319 -TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred -eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 3333233333377899999987766644555 777777766644444432 234577777776655443
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.01 E-value=0.54 Score=53.51 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEE-ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLW-CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IW-d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
-..++|.+++ .+|+-...++|+|+ +.+. +....+.. ...+..|-. |.+|+..+.+ .|.+||+.+++. ++.+
T Consensus 71 g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~-~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-i~~i 142 (443)
T PF04053_consen 71 GLSFVWSSRN-RYAVLESSSTIKIYKNFKN-EVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-IRRI 142 (443)
T ss_dssp -SEEEE-TSS-EEEEE-TTS-EEEEETTEE--TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E-EEEE
T ss_pred eeEEEEecCc-cEEEEECCCeEEEEEcCcc-ccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcce-eeEE
Confidence 4568888844 46666668889996 3321 11112221 112444422 7777776644 899999998664 6666
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004603 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg 673 (743)
.- ..|..|.|++++..+. -.+ +..|.|++.+..
T Consensus 143 ~v--~~vk~V~Ws~~g~~va-l~t-~~~i~il~~~~~ 175 (443)
T PF04053_consen 143 DV--SAVKYVIWSDDGELVA-LVT-KDSIYILKYNLE 175 (443)
T ss_dssp SS---E-EEEEE-TTSSEEE-EE--S-SEEEEEE-HH
T ss_pred ec--CCCcEEEEECCCCEEE-EEe-CCeEEEEEecch
Confidence 52 2388999999987544 444 346777765433
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.026 Score=64.31 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=65.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE-EEEEecCCCcEEEEEeCCCcEEEEECCCCee
Q 004603 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 597 ~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~-sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~ 675 (743)
.-.|.-+.|+|...+||++..+|.|-+..+.- .. +.++.-|...|+ ++||.|||+ +|+.|-.||+|++-|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-qR-lwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-QR-LWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc-ce-eEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 34578899999999999999999999888873 33 677765666666 999999976 888999999999999999876
Q ss_pred eEE
Q 004603 676 AGV 678 (743)
Q Consensus 676 v~~ 678 (743)
+..
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 655
No 356
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.94 E-value=0.26 Score=44.79 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=48.0
Q ss_pred EEEEEEcC---C-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 600 ITDVRFSP---S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 600 V~~vafsp---~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
|+++++.. + .+.|+.|+.|..||+|+-. ..+..+.. .+.|++|+-...+ .|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCc
Confidence 56666644 3 2579999999999999854 34666653 4668888777653 47788889999999754
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.83 E-value=0.69 Score=50.20 Aligned_cols=157 Identities=12% Similarity=0.069 Sum_probs=92.1
Q ss_pred cEEEEECCCCeEEEEEccc-CCCEEE---EEEcCC----CCEEEEEeC----------CCeEEEEECCCC-----CeeEE
Q 004603 578 KAVLWCTESFTVKSTLEEH-TQWITD---VRFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSLR 634 (743)
Q Consensus 578 ~V~IWd~~t~~~i~~l~~H-~~~V~~---vafsp~----~~~LaSgs~----------Dg~VrvWDl~~~-----~~~l~ 634 (743)
.|+|.|..+.+.+.++.-. ...|++ +.|..+ ..+|+.|.. .|.|.++++... +..+.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5788888777776655322 223443 334332 456776654 289999999873 11112
Q ss_pred EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe-eeEEEecc---CceeeecCCCEEEEEecCCeEEEE--ec
Q 004603 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKVC---NLMPIILKGCFILNSIFNCYLLLH--RI 708 (743)
Q Consensus 635 ~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~-~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh--~~ 708 (743)
.-....++|++|+-. +..++++. ++.|++|++...+ .+..-..+ ....+...+.+++.|.....+.+. +.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 223456889999877 33455444 4789999998877 44333222 224455667898888876666652 32
Q ss_pred cc-------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603 709 FL-------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 709 ~v-------------~~l~v~~~~~~~~laSgs~DG~V~iWd~ 738 (743)
.. ...+..+-.+...++.+..+|.|.++..
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 11 1222222212348999999999888754
No 358
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.76 E-value=0.61 Score=53.89 Aligned_cols=110 Identities=9% Similarity=0.040 Sum_probs=67.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCC------CEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004603 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~------~V~--~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~ 638 (743)
+..++.++.|+.|...|..+++.+-.+..... .+. .+++. ++..++.++.|+.|+.+|.++++. +..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~-~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ-VWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE-eeeecC
Confidence 44566777789999999999887766543222 010 01111 226788888999999999999876 444432
Q ss_pred CCCC-----e-EEEEEecCCCcEEEEEe---------CCCcEEEEECCCCeeeEEEec
Q 004603 639 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 639 h~~~-----V-~sl~fsp~g~~lL~Sgs---------~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
.... + .+..+.. . +++.++ .++.|..+|..+|+.+..+..
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 2110 1 1222222 2 233332 367899999999998877754
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=1.1 Score=50.02 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeE
Q 004603 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 633 (743)
Q Consensus 558 V~siafspdg~~-LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~---Dg~VrvWDl~~~~~~l 633 (743)
-.++++++.++. +++...++.|.+.|..+.+.+....--. ....++|+|++..++.+.. +++|.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 457888888874 4444556889999977766555443212 5668899999887766655 6889999988876533
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE--------EEeccCceeeecCCCEEEEEecC---Ce
Q 004603 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------VFKVCNLMPIILKGCFILNSIFN---CY 702 (743)
Q Consensus 634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~--------~~~~~~~i~~s~~g~~l~sgs~D---g~ 702 (743)
....+- .+ ..+++.|+|..++++-..++.|.+.|.......+ .......+.+.++|.+++..... +.
T Consensus 155 ~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 333332 33 8899999999888888889999999987765553 11223447788999876665444 35
Q ss_pred EEE
Q 004603 703 LLL 705 (743)
Q Consensus 703 I~v 705 (743)
+.+
T Consensus 233 v~~ 235 (381)
T COG3391 233 VLK 235 (381)
T ss_pred EEE
Confidence 544
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.63 E-value=3.4 Score=44.78 Aligned_cols=149 Identities=13% Similarity=0.049 Sum_probs=86.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc----c-CCCEEEEEEcCCCCEEEEEeC-----------CCeE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----H-TQWITDVRFSPSLSRLATSSA-----------DRTV 621 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~----H-~~~V~~vafsp~~~~LaSgs~-----------Dg~V 621 (743)
+.++..-..+..|+++. .-+.+++.+++..+..+.. . .....++...|+|.+.++... -|.|
T Consensus 68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 44554444454555553 3467777766655333321 1 234567888999887665443 1234
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC--C----eeeEEEec-----cCceeeecC
Q 004603 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G----SCAGVFKV-----CNLMPIILK 690 (743)
Q Consensus 622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t--g----~~v~~~~~-----~~~i~~s~~ 690 (743)
+.+|. .+. .++.+..|-..-+.|+|+|++..++++=+..+.|+-|++.. + +....+.. ...+++..+
T Consensus 146 yr~~p-~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad 223 (307)
T COG3386 146 YRVDP-DGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD 223 (307)
T ss_pred EEEcC-CCC-EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence 44443 233 25555665666789999999998887877778898888762 2 11111111 244777788
Q ss_pred CCEEEEEecCC-eEEEEeccc
Q 004603 691 GCFILNSIFNC-YLLLHRIFL 710 (743)
Q Consensus 691 g~~l~sgs~Dg-~I~vh~~~v 710 (743)
|++.+++..++ .|.+++...
T Consensus 224 G~lw~~a~~~g~~v~~~~pdG 244 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNPDG 244 (307)
T ss_pred CCEEEecccCCceEEEECCCC
Confidence 88776555543 566654443
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.37 Score=50.61 Aligned_cols=161 Identities=7% Similarity=-0.010 Sum_probs=97.5
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE--------ECCCCeEEEEE--------------c--ccCCC
Q 004603 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW--------CTESFTVKSTL--------------E--EHTQW 599 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW--------d~~t~~~i~~l--------------~--~H~~~ 599 (743)
.+..+.++..|.-.-..+.|.+||+.++.+.. -|..- ++++.++..++ . -+.-.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 45667778888877889999999999888743 23322 23333322111 1 23345
Q ss_pred EEEEEEcCCCCEEEEEeCCCe----EEEEECCCCCeeEEEEe-------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 004603 600 ITDVRFSPSLSRLATSSADRT----VRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (743)
Q Consensus 600 V~~vafsp~~~~LaSgs~Dg~----VrvWDl~~~~~~l~~l~-------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvW 668 (743)
|..++..+++..++-|-..|- --+.-...+..++..+. .....|-+|+.+.+...+.+++-..+...+|
T Consensus 228 iRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~ 307 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIW 307 (366)
T ss_pred eeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEE
Confidence 788888888776665544321 11111111122222222 1224577888887777777788778889999
Q ss_pred ECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEE
Q 004603 669 SINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 669 Dl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh 706 (743)
|..+|..+..-....+.-+.+...-+++.+.+|.+.+.
T Consensus 308 da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 308 DAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred EcCCCcEEecccccccccceeccCceEEecCCceEEec
Confidence 99999988766655555555555556666666666653
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.51 E-value=0.98 Score=48.97 Aligned_cols=121 Identities=11% Similarity=0.113 Sum_probs=75.1
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEc-ccCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004603 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~-~i~~l~-~H~~~V~~vafsp~~~~LaSgs~Dg~V 621 (743)
.++.+... ...++|++|+-- .++ |+.|. .++|.+|++...+ .+..-. .....|+++... +++|+.|+..+.|
T Consensus 78 ~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 78 KLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCE
Confidence 33444333 346789999876 444 44444 4789999998766 333222 123356666655 5699999988888
Q ss_pred EEEECCCCCeeEEEEe--cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 622 RVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 622 rvWDl~~~~~~l~~l~--~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
.++..+.....+..+. .....+++++|-+++. .++.++.+|.|.++...
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence 8775543222233222 2345688999987765 77789999999998765
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.42 E-value=0.75 Score=54.30 Aligned_cols=141 Identities=12% Similarity=0.083 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCEEEEEe------CCCcEEEEECC-CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCC-CeEEEE---
Q 004603 556 SKVESCHFSPDGKLLATGG------HDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVW--- 624 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs------~Dg~V~IWd~~-t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~D-g~VrvW--- 624 (743)
..|.+.+++|+|+.++..- .|+.-.||-.. .+.....+.+. ..+.-.|+|+|..|++.... ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3578899999999877665 34444455332 22232233332 37889999998877776532 223333
Q ss_pred --------ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEE---EECCCCeeeEE-----Ee----c-cC
Q 004603 625 --------DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY---WSINNGSCAGV-----FK----V-CN 683 (743)
Q Consensus 625 --------Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Irv---WDl~tg~~v~~-----~~----~-~~ 683 (743)
+++.+.. .. .....|.++.|+|||..+++.. ++.|.| -....|+ ... +. . ..
T Consensus 428 ~~gql~~~~vd~ge~--~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 428 ATGQLARTPVDASAV--AS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCceEEEEeccCchh--hh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeecccCCccc
Confidence 3332221 11 2345799999999999877665 466766 3333443 111 11 1 13
Q ss_pred ceeeecCCCEEEEEecCCeEEEE
Q 004603 684 LMPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 684 ~i~~s~~g~~l~sgs~Dg~I~vh 706 (743)
.+.|..++..+ .+..++...+|
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~ 522 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVW 522 (591)
T ss_pred cceEecCCEEE-EEecCCCCceE
Confidence 35677777754 44444433333
No 364
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.37 E-value=0.0042 Score=72.78 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=73.7
Q ss_pred eEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEE-----------EcCCCCEEEEEeCCCeEEE
Q 004603 558 VESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 558 V~siafsp---dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~va-----------fsp~~~~LaSgs~Dg~Vrv 623 (743)
+.-|.|+| +.-+++.+-.+++|++.+.++... ..|++|..+++.++ .+|||..|+.++.||.|++
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 34455554 666788888889999877654322 34556776655543 5789999999999999999
Q ss_pred EECCCC----CeeEEEEecCCCC--eEEEEEecC-------CCc--EEEEEeCCCcEEEEECCCCeee
Q 004603 624 WDTENP----DYSLRTFTGHSTT--VMSLDFHPS-------KED--LLCSCDNNSEIRYWSINNGSCA 676 (743)
Q Consensus 624 WDl~~~----~~~l~~l~~h~~~--V~sl~fsp~-------g~~--lL~Sgs~Dg~IrvWDl~tg~~v 676 (743)
|.+--. ..|++..+.|.+. |+.+ |+.. +.+ ++.+...+..+++|.....+|.
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 976321 2346666777632 3333 3321 111 2334445567889987777775
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.22 E-value=3.3 Score=46.50 Aligned_cols=180 Identities=18% Similarity=0.115 Sum_probs=91.9
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-----CC---CEEEEEeCCCc
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-----DG---KLLATGGHDKK 578 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-----dg---~~LaSgs~Dg~ 578 (743)
-|++.|..+|.+.+.+.....-.... .+.+ ...-......|+++.|+- |+ -++++|...|.
T Consensus 98 GFvaigy~~G~l~viD~RGPavI~~~--~i~~---------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 98 GFVAIGYESGSLVVIDLRGPAVIYNE--NIRE---------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEE--EGGG-----------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred cEEEEEecCCcEEEEECCCCeEEeec--cccc---------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 58999999999999977333111000 0000 001112345678888863 33 37889999999
Q ss_pred EEEEECC--C-CeE----EEEEcccCCCEEEEE-EcCC-C-------------------CEEEEEeCCCeEEEEECCCCC
Q 004603 579 AVLWCTE--S-FTV----KSTLEEHTQWITDVR-FSPS-L-------------------SRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 579 V~IWd~~--t-~~~----i~~l~~H~~~V~~va-fsp~-~-------------------~~LaSgs~Dg~VrvWDl~~~~ 630 (743)
+.+|.+. . +.. ......|.+.|..|. |+.+ + +.++....+..|||+..-+.+
T Consensus 167 v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k 246 (395)
T PF08596_consen 167 VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSK 246 (395)
T ss_dssp EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---
T ss_pred EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCc
Confidence 9999764 1 211 122224556666554 3221 1 224444558889999988766
Q ss_pred eeEEEEecCCCCeEEEEEec----CCCcEEEEEeCCCcEEEEECCCCeeeEEEecc--------CceeeecCCCEEEEEe
Q 004603 631 YSLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--------NLMPIILKGCFILNSI 698 (743)
Q Consensus 631 ~~l~~l~~h~~~V~sl~fsp----~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~--------~~i~~s~~g~~l~sgs 698 (743)
..-+.+ ...-.+..+++-+ .+...|++-..+|.|++|.+..-+.+..+... ....++.+|..++..+
T Consensus 247 ~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 247 GAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred ccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 533444 2222334455532 23457778888999999999998888877763 2355666666554443
No 366
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.20 E-value=0.17 Score=57.78 Aligned_cols=117 Identities=10% Similarity=0.106 Sum_probs=77.9
Q ss_pred CCeEEEEEcCC----CCEEEEEeCCCcEEEEECC-----CCeEEEEEccc---CCCE--EEEEEcCCCCEEEEEeCCCeE
Q 004603 556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEH---TQWI--TDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 556 ~~V~siafspd----g~~LaSgs~Dg~V~IWd~~-----t~~~i~~l~~H---~~~V--~~vafsp~~~~LaSgs~Dg~V 621 (743)
..|..+.|.|- ...+...-..+.|.||-+. ..+.+..-..+ .-+| -.+.|||....|+.-..+..-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 34999999983 3245555668899999875 22222211111 1111 235699988888776666655
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t 672 (743)
-+++++.....++.-....+.|.|.||.+||..++++.+..=.-+|||-..
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 667777655545544456788999999999999988887666778898553
No 367
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.14 E-value=0.86 Score=53.65 Aligned_cols=124 Identities=11% Similarity=0.127 Sum_probs=79.4
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCCCEEEEEEc--CCCCEEEEEeCCC
Q 004603 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFS--PSLSRLATSSADR 619 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~--~l~~H~~~V~~vafs--p~~~~LaSgs~Dg 619 (743)
.+....++...-..+.-+.-+.-++..++-+...++.|||.+.+.... .| ...+.|.++.|. |++..+++.|...
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCc
Confidence 344445555555556666666655554554445579999998876432 33 346789999995 4788899999999
Q ss_pred eEEEEECC-----CCC---eeEEE--EecCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 620 TVRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 620 ~VrvWDl~-----~~~---~~l~~--l~~h~-~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
.|.+|--. +.. .+++. +..|+ .+|.+.+|.++|. ++ .|+ +..+.|+|-.
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 99998531 111 11222 23444 5789999999985 33 343 4578888743
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=0.21 Score=56.27 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=86.3
Q ss_pred CCCE-EEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCe-eEEEE
Q 004603 566 DGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDY-SLRTF 636 (743)
Q Consensus 566 dg~~-LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~-------~LaSgs~Dg~VrvWDl~~~~~-~l~~l 636 (743)
+.++ |.++..-..++-.|++.|+.+..+.-|.. |.-+.+.|+.+ .-+.|-.|..|.-||.|-... .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4443 45556667788899999999999988777 88888888643 234566799999999885433 22232
Q ss_pred ecCC----CCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeee-EEEec----cCceeeecCCCEEEEEecCC
Q 004603 637 TGHS----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKV----CNLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 637 ~~h~----~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v-~~~~~----~~~i~~s~~g~~l~sgs~Dg 701 (743)
.+|. ....|.+ ..+...+|.||.+|.||+||. .+... ..+.+ ...+.++.+|.||++.+..-
T Consensus 423 q~kqy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty 493 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY 493 (644)
T ss_pred eccccccccccceee--ecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE
Confidence 3332 1223333 334446889999999999997 33322 22332 24467778999888766543
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.075 Score=64.02 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=70.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE
Q 004603 566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~-~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~ 644 (743)
-+..++.|+..|.|...|+... .+...=+.-.++|++++|+-+|..++.|-.+|.|.+||+.+++. ++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 3557888888888988887642 21111122357899999999999999999999999999998664 677766665555
Q ss_pred EEE---EecCCCcEEEEEeCCCcEEEEEC
Q 004603 645 SLD---FHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 645 sl~---fsp~g~~lL~Sgs~Dg~IrvWDl 670 (743)
++- +..++. .+.++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 543 344444 5557766664 6654
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=0.23 Score=55.85 Aligned_cols=110 Identities=11% Similarity=0.127 Sum_probs=74.7
Q ss_pred eEEEEEcCCCC-------EEEEEeCCCcEEEEECCC-Ce-EEEEEcccC----CCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603 558 VESCHFSPDGK-------LLATGGHDKKAVLWCTES-FT-VKSTLEEHT----QWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 558 V~siafspdg~-------~LaSgs~Dg~V~IWd~~t-~~-~i~~l~~H~----~~V~~vafsp~~~~LaSgs~Dg~VrvW 624 (743)
|.-+.+.|+.+ .-+.|-.|+.|.-||.+- ++ .+....+|. ....|.+-.. ..+||.|+.+|.||+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecC-CceEEEeecCCcEEee
Confidence 55555555443 134556688899999873 22 333334442 2344544333 4589999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
|- .+......+.+-..+|..|+..-+|.++|+|| +..+.+.|+.
T Consensus 457 dr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 457 DR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred hh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 96 44444566778889999999999999999777 4677777764
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.56 E-value=0.1 Score=53.02 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=60.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-eEEEEEcccCCCEEEEE-EcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CC
Q 004603 566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVR-FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT 642 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~-~~i~~l~~H~~~V~~va-fsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~-~~ 642 (743)
-+..+++|+.||.|.+|+..-. .....+..-...|.++- --.++.+.++++.|+.||.|++...+. +.....|+ ..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCC
Confidence 3457889999999999987621 11111111122233321 122455788999999999999987554 44444455 33
Q ss_pred eEEEEEecCCCcEEEEE--eCCCcEEEEECCC
Q 004603 643 VMSLDFHPSKEDLLCSC--DNNSEIRYWSINN 672 (743)
Q Consensus 643 V~sl~fsp~g~~lL~Sg--s~Dg~IrvWDl~t 672 (743)
+..+.....++ +++.. |.|..++.|++..
T Consensus 148 ~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 44443333333 44444 5666777777654
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.53 E-value=1.2 Score=48.16 Aligned_cols=124 Identities=13% Similarity=0.178 Sum_probs=81.3
Q ss_pred CeEEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 004603 557 KVESCHFSPDGKLLATGGH-----D----KKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD 625 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~-----D----g~V~IWd~~-t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWD 625 (743)
..+.+.+.|+|++.++... . ..-.||-++ .+..++.+..|-..-..|+|+||++.|+.+.. .+.|.-|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 4567888889987776544 1 122455555 56666667666666778999999988877765 57888887
Q ss_pred CCC--C----CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEECCCCeeeEEEecc
Q 004603 626 TEN--P----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 626 l~~--~----~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg-~IrvWDl~tg~~v~~~~~~ 682 (743)
+.. + ......+..+.+..-.++...+|. +.+++..+| .|.+|+.. |+.+..+...
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECC
Confidence 752 1 111222223446667788888876 443443343 89999998 8888888765
No 373
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.43 E-value=2.9 Score=50.45 Aligned_cols=81 Identities=26% Similarity=0.344 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeE--E-EEE--------cccCCCEEEEEEcCC---CCEE
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES---------FTV--K-STL--------EEHTQWITDVRFSPS---LSRL 612 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t---------~~~--i-~~l--------~~H~~~V~~vafsp~---~~~L 612 (743)
-.|..|.++|+|++|+..|..+.+.+.=.+. ++. . +++ ..+...|..++|||. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4588999999999999999876544432111 111 1 111 134567999999995 5788
Q ss_pred EEEeCCCeEEEEECCCCCeeEEEE
Q 004603 613 ATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 613 aSgs~Dg~VrvWDl~~~~~~l~~l 636 (743)
+.-..|++||+||+.....+..++
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEE
Confidence 888899999999998766554444
No 374
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.40 E-value=1.1 Score=52.83 Aligned_cols=137 Identities=11% Similarity=0.091 Sum_probs=74.4
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEE--EEcccCCCEEEEEEcCCCCEEEEEeCCCe-----EEEEEC
Q 004603 560 SCHFSPDGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADRT-----VRVWDT 626 (743)
Q Consensus 560 siafspdg~~LaSgs~D------g~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp~~~~LaSgs~Dg~-----VrvWDl 626 (743)
++++. ++.+.++||.| .+|..||..+.+... .+.........+.+ +|...|+|+.||. |-.||.
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence 34443 56788899988 356677877654322 12222222222222 5778899999875 778888
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC------cEEEEECCCCeeeEEEeccC----ceeeecCCCEEEE
Q 004603 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS------EIRYWSINNGSCAGVFKVCN----LMPIILKGCFILN 696 (743)
Q Consensus 627 ~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg------~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~s 696 (743)
++..... ...............-+..+++.|+.|+ +|..||..+++....-.-.+ .-....++...+.
T Consensus 404 ~~~~W~~--va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvv 481 (571)
T KOG4441|consen 404 VTNKWTP--VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVV 481 (571)
T ss_pred CCCcccc--cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEE
Confidence 7755321 1112222233332222345777787554 57788888776532221110 1133456666777
Q ss_pred EecCC
Q 004603 697 SIFNC 701 (743)
Q Consensus 697 gs~Dg 701 (743)
|+.|+
T Consensus 482 GG~~~ 486 (571)
T KOG4441|consen 482 GGFDG 486 (571)
T ss_pred CCccC
Confidence 77776
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=8.4 Score=41.01 Aligned_cols=120 Identities=15% Similarity=0.192 Sum_probs=79.3
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 551 l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H-~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~ 629 (743)
+.+-+..|.++.|+|+.+.|++......-.||=...|+.++++.-. -.....|.+.-++.++++--.+..+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3444555999999999998888887777788877778888877421 122345666666666666667888888876654
Q ss_pred Cee---------EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 630 DYS---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 630 ~~~---------l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
... +..........-.++|.|....++++=- -.=++||.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE-r~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE-RNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-cCCcEEEEEe
Confidence 321 1112222456788999999887775543 4456666554
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=0.4 Score=58.13 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=57.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEE---EcCCCCEEEEEeCCCeEEEEEC
Q 004603 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR---FSPSLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~va---fsp~~~~LaSgs~Dg~VrvWDl 626 (743)
-.++|+|++|+.+|++++.|-.+|.|.+||+.+++.++.+..|..+++.+- +..++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 457899999999999999999999999999999999998888776655543 3445567888877775 5654
No 377
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.98 E-value=0.15 Score=39.06 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~ 588 (743)
..|.+++|+|...+||.|..||.|.||.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 45999999999999999999999999998 443
No 378
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.91 E-value=0.13 Score=56.80 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=66.8
Q ss_pred cCCCCEEEEEe---------CCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603 564 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 564 spdg~~LaSgs---------~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~ 634 (743)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+|+.++... ++.|.++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 56777666632 246788999998765544333 56788999999999988875 78899999877643222
Q ss_pred EEecC----------------CCCeEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004603 635 TFTGH----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 635 ~l~~h----------------~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl 670 (743)
+..|- -+.-.++-|+|++.++++.--.+..|+.+.+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 33220 1223568899999988777666666666544
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.89 E-value=3 Score=49.32 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCEEEEEeCC-CcEEEE-----------ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEE--
Q 004603 558 VESCHFSPDGKLLATGGHD-KKAVLW-----------CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV-- 623 (743)
Q Consensus 558 V~siafspdg~~LaSgs~D-g~V~IW-----------d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~Vrv-- 623 (743)
.++-.|+|||+.|++.... ..+++. +++.++... .....|..++|+|||.+|+... ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 7788999998877776533 122232 333332221 2345799999999999887665 577776
Q ss_pred -EECCCCCeeE---EEEe-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004603 624 -WDTENPDYSL---RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 624 -WDl~~~~~~l---~~l~-~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl 670 (743)
-....+...+ ..+. +-...+.++.|..++. |+ .+..++...+|.+
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEE
Confidence 3333332212 1122 2334468899999877 44 3333444445543
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.88 E-value=0.2 Score=51.01 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=67.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEE-EEcCCCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC-HFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si-afspdg~~LaSgs~Dg~V~IWd~ 584 (743)
..-+.+|+.|+.|.+|..+-.....+. +. .-...|.|. .--.++.+.++++.|+.|+.|++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~---------------~~---s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR---------------VC---SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh---------------hh---cccccceeccccccccceeEEeccCCceeeecc
Confidence 466889999999999966522111110 00 001112222 22235668999999999999999
Q ss_pred CCCeEEEEEcccC-CCEEEEEEcCCCCEEEEE--eCCCeEEEEECCC
Q 004603 585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATS--SADRTVRVWDTEN 628 (743)
Q Consensus 585 ~t~~~i~~l~~H~-~~V~~vafsp~~~~LaSg--s~Dg~VrvWDl~~ 628 (743)
.-.+.+...-.|. ..+........+..++.+ |.|..++.|++..
T Consensus 132 ~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 132 KPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 8888877777777 555555555556666666 6777777777754
No 381
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.63 E-value=7.5 Score=40.76 Aligned_cols=135 Identities=17% Similarity=0.134 Sum_probs=77.7
Q ss_pred CCCEEEEEeCCCcEEEEECC-CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE---------
Q 004603 566 DGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--------- 635 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~-t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~--------- 635 (743)
.++.|+.|+++| |.++++. ..+..... +...|..+...|+-+.|++-+ |+.|+++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 677899999888 8999983 33333333 233499999999867666554 699999998754321100
Q ss_pred ----EecCCCCeEEEE--EecCCCcEEEEEeCCCcEEEEECCCC-----eeeEEEeccCc-eeeecCCCEEEEEecCCeE
Q 004603 636 ----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKVCNL-MPIILKGCFILNSIFNCYL 703 (743)
Q Consensus 636 ----l~~h~~~V~sl~--fsp~g~~lL~Sgs~Dg~IrvWDl~tg-----~~v~~~~~~~~-i~~s~~g~~l~sgs~Dg~I 703 (743)
.......|...+ -...+...|+.+. ..+|.||..... +..+.+..... ..+...+..++.|..++..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~ 160 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFY 160 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceE
Confidence 111223344444 1123344554444 558888877643 34455554322 2233336777777666655
Q ss_pred EE
Q 004603 704 LL 705 (743)
Q Consensus 704 ~v 705 (743)
.+
T Consensus 161 ~i 162 (275)
T PF00780_consen 161 LI 162 (275)
T ss_pred EE
Confidence 44
No 382
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.54 E-value=3.3 Score=45.96 Aligned_cols=140 Identities=12% Similarity=0.109 Sum_probs=77.6
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603 557 KVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs-----------~Dg-~V~IWd~~t--~~--~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~ 620 (743)
....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....|...-.....++|.+++ +++ ++.+..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 467899999999877753 223 676665332 22 234444444556889999888 444 444544
Q ss_pred EEEEECCCC-----C--eeEEEEec----CCCCeEEEEEecCCCcEEEEEeC------------------CCcEEEEECC
Q 004603 621 VRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSIN 671 (743)
Q Consensus 621 VrvWDl~~~-----~--~~l~~l~~----h~~~V~sl~fsp~g~~lL~Sgs~------------------Dg~IrvWDl~ 671 (743)
+++.|.... . ..+..+.. +...+..++|.|+|..+++.++. .+.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 445455321 1 11222322 12447789999998644433321 1345555665
Q ss_pred CCeeeEEEecc---CceeeecCCCEEEEEe
Q 004603 672 NGSCAGVFKVC---NLMPIILKGCFILNSI 698 (743)
Q Consensus 672 tg~~v~~~~~~---~~i~~s~~g~~l~sgs 698 (743)
.++......+. ..++++++|.++++-.
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 54432222222 3478888888876644
No 383
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.51 E-value=11 Score=39.44 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--------------EcccCCCEEEEE--EcCCCCEEEEEeCCCeE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--------------LEEHTQWITDVR--FSPSLSRLATSSADRTV 621 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~--------------l~~H~~~V~~va--fsp~~~~LaSgs~Dg~V 621 (743)
|..|...++-+.|++-+ |+.+.++++........ .......|...+ -...+...+.....++|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 99999998777666655 59999999876443321 111233455444 11233333344446689
Q ss_pred EEEECCCCC----eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE
Q 004603 622 RVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (743)
Q Consensus 622 rvWDl~~~~----~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~ 679 (743)
.+|...... ..++.+. ....+.+++|..+ .++.|.. ....+.|+.++.....+
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~~-~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVGTS-KGFYLIDLNTGSPSELL 173 (275)
T ss_pred EEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEEeC-CceEEEecCCCCceEEe
Confidence 988876531 2344544 4477899999943 4545553 45889999977654443
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.24 E-value=9.6 Score=40.01 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=82.7
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEE-EcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCCeeE
Q 004603 557 KVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENPDYSL 633 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs-~Dg~V~IWd~~t~~~i~~-l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD-l~~~~~~l 633 (743)
.+.+.++++++..+|... .++.-.||-...+..... +.+ ..++.-.|++++...+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 588999999999776655 233333333333332222 233 3678889999977777766677777774 33333212
Q ss_pred EEEecC--CCCeEEEEEecCCCcEEEEEe--CCCcEEEEECC---CC--e----eeEEE----eccCceeeecCCCEEEE
Q 004603 634 RTFTGH--STTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN---NG--S----CAGVF----KVCNLMPIILKGCFILN 696 (743)
Q Consensus 634 ~~l~~h--~~~V~sl~fsp~g~~lL~Sgs--~Dg~IrvWDl~---tg--~----~v~~~----~~~~~i~~s~~g~~l~s 696 (743)
...... ...|.++.++|||..+.+... .++.|.|=-+. .+ . .+... .....+.|..++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 222211 128999999999998776653 34566665443 22 0 11111 11234677788877776
Q ss_pred EecCC
Q 004603 697 SIFNC 701 (743)
Q Consensus 697 gs~Dg 701 (743)
+...+
T Consensus 183 ~~~~~ 187 (253)
T PF10647_consen 183 GRSAG 187 (253)
T ss_pred eCCCC
Confidence 65544
No 385
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=0.76 Score=56.06 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEE-----------EEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 004603 558 VESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKS-----------TLEEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (743)
Q Consensus 558 V~siafspdg~~LaSg--s~Dg~V~IWd~~t~~~i~-----------~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~Vrv 623 (743)
|..+...+|++..++. +.+-.|..||+++....+ +.......+.|+.|+|. ...++.+..|+.|+|
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 4445555676654433 344478889987532211 12223455778999995 344677788999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
..+......+..+. ....+++++|+|.|..++ .|-..|++.-|-..
T Consensus 183 ~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhcccC-cccceeeEEeccccceee-EecCCCeEEEeecc
Confidence 88765333233322 446789999999998544 78888888888643
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.47 E-value=2.2 Score=44.98 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=43.4
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCC-CeEEEEEcccCCCEEEEEEcCCCCEEEEEe
Q 004603 562 HFSPDGKLLATGGHD-----KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (743)
Q Consensus 562 afspdg~~LaSgs~D-----g~V~IWd~~t-~~~i~~l~~H~~~V~~vafsp~~~~LaSgs 616 (743)
.|||||++|+..-.| |.|-|||.+. ...+..|..|.-.-..+.|.+||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 589999999877544 7889999875 345666777777778899999999988774
No 387
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.47 E-value=12 Score=43.65 Aligned_cols=109 Identities=5% Similarity=-0.051 Sum_probs=66.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccC-CCEE---E-------EEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 004603 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~-~~V~---~-------vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~ 635 (743)
+..|+.++.++.|.-.|..+++.+-.+.... ..+. + +++ .+..++.++.|+.|...|.++++. +..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~-~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKV-VWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence 4567777778899999999998876654211 1111 1 122 235677888899999999999886 333
Q ss_pred Ee--cCCC--CeEE-EEEecCCCcEEEEEe-----CCCcEEEEECCCCeeeEEEe
Q 004603 636 FT--GHST--TVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 636 l~--~h~~--~V~s-l~fsp~g~~lL~Sgs-----~Dg~IrvWDl~tg~~v~~~~ 680 (743)
+. .+.. .+.+ -... ++ .+++..+ .+|.|+.+|.++|+.+..+.
T Consensus 146 ~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 22 1111 1111 1111 22 3443322 26889999999999876654
No 388
>PRK10115 protease 2; Provisional
Probab=92.45 E-value=22 Score=43.03 Aligned_cols=111 Identities=11% Similarity=0.058 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-C-----CeEEEEEC
Q 004603 558 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDT 626 (743)
Q Consensus 558 V~siafspdg~~LaSgs~-----Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-D-----g~VrvWDl 626 (743)
+..+.|+||+++|+.+.+ ...|++.|+.+++.+........ ..++|.+|++.|+.+.. + ..|+++++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 667889999998887643 23588889888764322212222 46899998876654433 2 36788888
Q ss_pred CCCC-eeEEEEecCCCCeEEEEEec-CCCcEEEEEe--CCCcEEEEEC
Q 004603 627 ENPD-YSLRTFTGHSTTVMSLDFHP-SKEDLLCSCD--NNSEIRYWSI 670 (743)
Q Consensus 627 ~~~~-~~l~~l~~h~~~V~sl~fsp-~g~~lL~Sgs--~Dg~IrvWDl 670 (743)
.++. .....+........-..+.+ ++.++++.+. .++.+.+|+.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8762 11333443333333233334 6676665443 3357888884
No 389
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.45 E-value=0.041 Score=64.84 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=76.0
Q ss_pred EeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--CeEEEEEc-----ccCCCEEEEEEcC---CCCEEEEEeCC
Q 004603 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES--FTVKSTLE-----EHTQWITDVRFSP---SLSRLATSSAD 618 (743)
Q Consensus 550 ~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t--~~~i~~l~-----~H~~~V~~vafsp---~~~~LaSgs~D 618 (743)
.+++..+.|-.++|-. +...+. -.-|...|||++- |+....+. .....+.-|.|+| +.-++..+..+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3456777888888854 222222 3336788998863 44322222 2233445566766 45667777789
Q ss_pred CeEEEEECCCCCeeEEEEecCCCCeEEEE-----------EecCCCcEEEEEeCCCcEEEEECC-----CCeeeEEEecc
Q 004603 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKVC 682 (743)
Q Consensus 619 g~VrvWDl~~~~~~l~~l~~h~~~V~sl~-----------fsp~g~~lL~Sgs~Dg~IrvWDl~-----tg~~v~~~~~~ 682 (743)
++|++..+.+.. ...+.+|..++..++ .+|||. +|+..+.||.|++|-+- .-+|.+.++.|
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 999988876533 244556777666654 466765 55666667777777542 22345555544
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.39 E-value=5 Score=45.05 Aligned_cols=117 Identities=9% Similarity=0.160 Sum_probs=63.4
Q ss_pred CeEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEEcccC--CCEEEEEEcC--CCCE-
Q 004603 557 KVESCHFSPDGKLLATGGH--------------------DKKAVLWCTESFTVKSTLEEHT--QWITDVRFSP--SLSR- 611 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~--------------------Dg~V~IWd~~t~~~i~~l~~H~--~~V~~vafsp--~~~~- 611 (743)
.-+++.|.|.-+.++|... ..++.+||+.+.+.+.++.--. ..+..|+|.. +..+
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g 261 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG 261 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence 3467788887777877643 3689999999999998886432 2466788854 3333
Q ss_pred EEEEeCCCeEEEE-ECCCCCee---EEEEec-----------------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004603 612 LATSSADRTVRVW-DTENPDYS---LRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 612 LaSgs~Dg~VrvW-Dl~~~~~~---l~~l~~-----------------h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl 670 (743)
|+.+.....|..| ..+.+... +..+.. -..-|++|..+.|.++|++++-.+|.||.||+
T Consensus 262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 3333344444444 33333211 111111 02457999999999999999999999999999
Q ss_pred CCC
Q 004603 671 NNG 673 (743)
Q Consensus 671 ~tg 673 (743)
...
T Consensus 342 SDP 344 (461)
T PF05694_consen 342 SDP 344 (461)
T ss_dssp SST
T ss_pred CCC
Confidence 763
No 391
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.18 E-value=7.6 Score=42.41 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=76.6
Q ss_pred CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeEEEEe--c-CC---
Q 004603 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFT--G-HS--- 640 (743)
Q Consensus 577 g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~----------Dg~VrvWDl~~~~~~l~~l~--~-h~--- 640 (743)
+.|.|+|.++++.+-.+.. +..-.+..+|+++.+++++. .-.|.+||..+... ...+. . |.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-TGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE-EEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc-cceEecCCcchhee
Confidence 3799999999988776643 33445678999998877543 45699999998543 33221 1 11
Q ss_pred -CCeEEEEEecCCCcEEEE-EeCCCcEEEEECCCCeeeEEEeccCceeeecCC-CEEEEEecCCeE
Q 004603 641 -TTVMSLDFHPSKEDLLCS-CDNNSEIRYWSINNGSCAGVFKVCNLMPIILKG-CFILNSIFNCYL 703 (743)
Q Consensus 641 -~~V~sl~fsp~g~~lL~S-gs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g-~~l~sgs~Dg~I 703 (743)
.....+.++.+++++++. .+---.|.|-|+..++.+.++....|.-+-|.+ .-+.+-+.||.+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSL 159 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCce
Confidence 122446788888877654 334457999999999988888765553333322 233344444443
No 392
>PHA02713 hypothetical protein; Provisional
Probab=92.12 E-value=4 Score=48.02 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=35.6
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEE--EEcccCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCC
Q 004603 566 DGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPD 630 (743)
Q Consensus 566 dg~~LaSgs~D------g~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp~~~~LaSgs~Dg-----~VrvWDl~~~~ 630 (743)
++.+++.||.+ ..|..||..+..... .+.........+.+ ++...+.||.++ +|.+||..+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 67777777754 346778877654321 11111112222222 466777887754 48889988754
No 393
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.99 E-value=2.6 Score=46.51 Aligned_cols=145 Identities=18% Similarity=0.229 Sum_probs=83.3
Q ss_pred CCCCeEEEEEcCCCCEEEE--EeCCC---cEEEEECCCCeEEEEEcc-cCCCE---EEEEEc-CCCC-EEEEEeCCCeEE
Q 004603 554 STSKVESCHFSPDGKLLAT--GGHDK---KAVLWCTESFTVKSTLEE-HTQWI---TDVRFS-PSLS-RLATSSADRTVR 622 (743)
Q Consensus 554 H~~~V~siafspdg~~LaS--gs~Dg---~V~IWd~~t~~~i~~l~~-H~~~V---~~vafs-p~~~-~LaSgs~Dg~Vr 622 (743)
-...+..+.|.++++.|+. ...+. .+.++|+.++.+...++. ....| ..+.|. +++. +|.....||.-+
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 3455888999999883333 33332 356677776655433332 22222 244554 5544 555555788776
Q ss_pred EEECCCCCeeEEEEecCCCCeEE-EEEecCCCcEEEEEeCCC----cEEEEECCCCeeeEEEec---cC-ceeeecCCCE
Q 004603 623 VWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKV---CN-LMPIILKGCF 693 (743)
Q Consensus 623 vWDl~~~~~~l~~l~~h~~~V~s-l~fsp~g~~lL~Sgs~Dg----~IrvWDl~tg~~v~~~~~---~~-~i~~s~~g~~ 693 (743)
||-++........+....-.|.. +.|++++..+++++..+. .|..-++..+..+..+.. .. .+.|+|+|.+
T Consensus 262 ly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 262 LYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKY 341 (353)
T ss_dssp EEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSE
T ss_pred EEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCE
Confidence 66554434334556555556744 678888888888887643 566667772233344443 33 5778899988
Q ss_pred EEEEe
Q 004603 694 ILNSI 698 (743)
Q Consensus 694 l~sgs 698 (743)
++...
T Consensus 342 ~v~~~ 346 (353)
T PF00930_consen 342 YVDTY 346 (353)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77654
No 394
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.95 E-value=15 Score=40.88 Aligned_cols=147 Identities=15% Similarity=0.248 Sum_probs=79.3
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
+++|..+..|+.-.+|...-. ++ .+.-|..+. .......++++.+.++-...++.|+-.|+
T Consensus 48 ~kllF~s~~dg~~nly~lDL~--------------t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL 109 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLA--------------TG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL 109 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred CEEEEEeccCCCcceEEEEcc--------------cC----EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence 367777777887777733211 11 122222221 11224566788888766666778999999
Q ss_pred CCCeEEEEEcccCCCEEEEEEc--CCCCEEEEEeC---C-------------------CeEEEEECCCCCeeEEEEecCC
Q 004603 585 ESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSA---D-------------------RTVRVWDTENPDYSLRTFTGHS 640 (743)
Q Consensus 585 ~t~~~i~~l~~H~~~V~~vafs--p~~~~LaSgs~---D-------------------g~VrvWDl~~~~~~l~~l~~h~ 640 (743)
++.+....+......+-...|. .++..++-.-. | ..|...|+.++. ..++..-.
T Consensus 110 ~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~ 187 (386)
T PF14583_consen 110 DTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDT 187 (386)
T ss_dssp TT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEES
T ss_pred CcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecC
Confidence 9988777777777777656663 35555433211 1 235555677655 34444456
Q ss_pred CCeEEEEEecCCCcEEEEEeC---CC-cEEEEECCC
Q 004603 641 TTVMSLDFHPSKEDLLCSCDN---NS-EIRYWSINN 672 (743)
Q Consensus 641 ~~V~sl~fsp~g~~lL~Sgs~---Dg-~IrvWDl~t 672 (743)
..+.-+.|+|..+.+|+-|-+ |. .-|||-+++
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 778899999998888877753 22 237776653
No 395
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.88 E-value=0.46 Score=36.42 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 597 ~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~ 627 (743)
...|.+++|+|..++||.+..||.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999983
No 396
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.72 E-value=33 Score=41.99 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=68.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcccCCC--------EEEEEEc----------------CCCCEEEEEeCCCeEE
Q 004603 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFS----------------PSLSRLATSSADRTVR 622 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~--------V~~vafs----------------p~~~~LaSgs~Dg~Vr 622 (743)
+..|+.++.++.|.-.|..+++.+-.+...... +..+++. .++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888888999988887666432210 1123331 1345788888999999
Q ss_pred EEECCCCCeeEEEEecCCCCe-------------EEEEEec--CCCcEEEEEe----------CCCcEEEEECCCCeeeE
Q 004603 623 VWDTENPDYSLRTFTGHSTTV-------------MSLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG 677 (743)
Q Consensus 623 vWDl~~~~~~l~~l~~h~~~V-------------~sl~fsp--~g~~lL~Sgs----------~Dg~IrvWDl~tg~~v~ 677 (743)
-.|.++++.| ..|. ..+.| ..+.-.| .+. +++.|+ .+|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~-W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLC-EDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEE-EEec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9999998874 3332 11111 0011111 022 333443 26889999999999987
Q ss_pred EEe
Q 004603 678 VFK 680 (743)
Q Consensus 678 ~~~ 680 (743)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 765
No 397
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.62 E-value=2.2 Score=48.12 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=65.5
Q ss_pred EEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEe--cC----------------
Q 004603 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PS---------------- 651 (743)
Q Consensus 590 i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fs--p~---------------- 651 (743)
...|......+.+|+.+|++.+.++.+.-|.|.++|+.++.. ++.++|..+.=+.-... ..
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 344555666789999999999999988899999999998654 77777766532221111 11
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeEEEecc
Q 004603 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 652 g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
.-.|++-...-|.|.||+++.|..+..+...
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 1135556778899999999999888777643
No 398
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.32 E-value=30 Score=39.13 Aligned_cols=42 Identities=7% Similarity=0.137 Sum_probs=31.8
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc
Q 004603 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 640 ~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
.+.+..++++|+++ ++|.-..+|.+.|.+..-.++...+...
T Consensus 216 ~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 216 DGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred CCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecC
Confidence 35799999999987 5566677899999887766666665543
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.79 E-value=5.1 Score=47.26 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=71.8
Q ss_pred CCCEEEEEeCCCc-----EEEEECCCCeE--EEEEcccCCCEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCCee
Q 004603 566 DGKLLATGGHDKK-----AVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADR------TVRVWDTENPDYS 632 (743)
Q Consensus 566 dg~~LaSgs~Dg~-----V~IWd~~t~~~--i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg------~VrvWDl~~~~~~ 632 (743)
+|.+.|+||.||. |-.||.++.+. +..+......+-.+.+ ++.+.++|+.|+ +|..||..+....
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 7888999999864 56677655332 1111111112222222 467778887554 5788888876531
Q ss_pred EE-EEecCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEECCCCeeeEEE--ecc-Cc-eeeecCCCEEEEEecCCe
Q 004603 633 LR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVF--KVC-NL-MPIILKGCFILNSIFNCY 702 (743)
Q Consensus 633 l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg-----~IrvWDl~tg~~v~~~--~~~-~~-i~~s~~g~~l~sgs~Dg~ 702 (743)
.. .+..-... ..++.- +..+++.|+.|+ +|..||..+.+....- ... .. -....++...++|+.|+.
T Consensus 458 ~~~~M~~~R~~-~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 458 LIAPMNTRRSG-FGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred ecCCccccccc-ceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence 11 11111111 123332 245788888776 3788998887654331 111 11 223455666677777765
Q ss_pred EEE
Q 004603 703 LLL 705 (743)
Q Consensus 703 I~v 705 (743)
-.+
T Consensus 535 ~~l 537 (571)
T KOG4441|consen 535 NNL 537 (571)
T ss_pred ccc
Confidence 444
No 400
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.60 E-value=26 Score=40.98 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=79.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcc--cCCCEEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCCeeEEEE
Q 004603 567 GKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~--H~~~V~~vafsp--~~~~LaSgs------~Dg~VrvWDl~~~~~~l~~l 636 (743)
+..|+.++.|+.|...|.++++.+-.+.. +... ..+.-.| .+..|+.+. .+|.|..+|+++++. +..+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~-lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL-VWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce-eEec
Confidence 34677788899999999999998765532 1110 1111122 123455543 278999999998775 3322
Q ss_pred ecC-------------------------------CCCeE-EEEEecCCCcEEEEEeC----CC-----------cEEEEE
Q 004603 637 TGH-------------------------------STTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWS 669 (743)
Q Consensus 637 ~~h-------------------------------~~~V~-sl~fsp~g~~lL~Sgs~----Dg-----------~IrvWD 669 (743)
..- ...|+ .+.+.|+...+++..+. ++ .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 110 01111 23566654433332221 12 577789
Q ss_pred CCCCeeeEEEeccCc-----------e--eeecCCC---EEEEEecCCeEEEEec
Q 004603 670 INNGSCAGVFKVCNL-----------M--PIILKGC---FILNSIFNCYLLLHRI 708 (743)
Q Consensus 670 l~tg~~v~~~~~~~~-----------i--~~s~~g~---~l~sgs~Dg~I~vh~~ 708 (743)
+++|+.+..|..... + .+..+|. .++.+..+|.+.+.+-
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr 332 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDR 332 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEEC
Confidence 999998877764211 1 1224565 6777788887777544
No 401
>PHA02713 hypothetical protein; Provisional
Probab=90.36 E-value=2.2 Score=50.27 Aligned_cols=108 Identities=9% Similarity=0.059 Sum_probs=59.7
Q ss_pred CCCEEEEEeCCC-----------------------cEEEEECCCCeEEE--EEcccCCCEEEEEEcCCCCEEEEEeCC--
Q 004603 566 DGKLLATGGHDK-----------------------KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD-- 618 (743)
Q Consensus 566 dg~~LaSgs~Dg-----------------------~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp~~~~LaSgs~D-- 618 (743)
+|++.+.||.++ .|..||..+.+... .+.........+.+ ++...+.|+.+
T Consensus 398 ~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~ 475 (557)
T PHA02713 398 DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDE 475 (557)
T ss_pred CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCC
Confidence 677778887653 46678876644321 11111111112222 35666777654
Q ss_pred ----CeEEEEECCC-CCe-eEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEE
Q 004603 619 ----RTVRVWDTEN-PDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGV 678 (743)
Q Consensus 619 ----g~VrvWDl~~-~~~-~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~ 678 (743)
..|..||..+ ... .+..+......+..+.+ +..+++.|+.|+ .|-.||..+.+....
T Consensus 476 ~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 476 KNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCcccccccch
Confidence 2467899887 443 12233323333333333 345888999888 778888887765433
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.47 E-value=8.9 Score=41.44 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=63.0
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004603 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 552 ~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~ 631 (743)
.+-.+.|..+..++||++|+++..-....-||--...-...-+.-...|..+.|.|++.+.+.+ ..|.|++=+....
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~-- 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD-- 217 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE--
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC--
Confidence 3445779999999999999998766666778754322222223346789999999997776654 8888888772221
Q ss_pred eEEEEec-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee
Q 004603 632 SLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 632 ~l~~l~~-------h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~ 675 (743)
..++.. -.-.+.+++|.+++. ++++|+ .|.| +.....|+.
T Consensus 218 -~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGkt 264 (302)
T PF14870_consen 218 -GETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKT 264 (302)
T ss_dssp -EEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS
T ss_pred -ccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCcc
Confidence 122221 112378899998854 665555 4543 344455554
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.26 E-value=4 Score=46.02 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=63.7
Q ss_pred CceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEE-EEE-cCCC----------
Q 004603 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRF-SPSL---------- 609 (743)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~-vaf-sp~~---------- 609 (743)
.........+......+.+|+.+|++++.|+...=|.|.|+|+.++..++.++|..+.=.. +.. ....
T Consensus 294 ~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~ 373 (415)
T PF14655_consen 294 AAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPK 373 (415)
T ss_pred CcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccC
Confidence 3445566677778888999999999999999888899999999999998888876543111 111 1111
Q ss_pred ------C-EEEEEeCCCeEEEEECCCCCe
Q 004603 610 ------S-RLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 610 ------~-~LaSgs~Dg~VrvWDl~~~~~ 631 (743)
. +++-+-.-|.|-||+++.+..
T Consensus 374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 374 SSSRFALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred CCCcceEEEEEEeccCCeEEEEecCCCCE
Confidence 1 234455678888888887664
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.18 E-value=11 Score=45.02 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=74.6
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEEcccCCCEEEEEEc--CCCCEEE
Q 004603 558 VESCHFSP--DGKLLATGGHDKKAVLWCTES-------F-------------TVKSTLEEHTQWITDVRFS--PSLSRLA 613 (743)
Q Consensus 558 V~siafsp--dg~~LaSgs~Dg~V~IWd~~t-------~-------------~~i~~l~~H~~~V~~vafs--p~~~~La 613 (743)
|+-|.+.. +...|+.|.+||.|.+|.+++ . ++...+. -...++.++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 66665544 556899999999999996631 0 0112222 23468999998 7778888
Q ss_pred EEeCCCeEEEEECCCC--CeeEEEEecCCCCeEEEEEecCC--C---cEEEEEeCCCcEEEEEC
Q 004603 614 TSSADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSK--E---DLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 614 Sgs~Dg~VrvWDl~~~--~~~l~~l~~h~~~V~sl~fsp~g--~---~lL~Sgs~Dg~IrvWDl 670 (743)
.++....|.||-.... +.....-..|...|-+|+|.++. . ..+++++-.|.|.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888865431 11111111255678899998764 2 36778888999999887
No 405
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.09 E-value=28 Score=38.11 Aligned_cols=119 Identities=11% Similarity=0.071 Sum_probs=67.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEccc----------CCCEEEEEEcCCCCEEEEEeC---CC-------
Q 004603 562 HFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEH----------TQWITDVRFSPSLSRLATSSA---DR------- 619 (743)
Q Consensus 562 afspdg~~LaSgs~Dg~V~IWd~~t~~~--i~~l~~H----------~~~V~~vafsp~~~~LaSgs~---Dg------- 619 (743)
++...+..++--+.+|.|+--|+..... ...+..- .+.---+++++..++|++--. ++
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 3444444444456777777777654332 1122100 011223567765555544321 22
Q ss_pred eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEECCCCeeeEEEecc
Q 004603 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 620 ~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg-s~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
.|-++|+.+.+. +..+.- ...+.+|..+.+..-+|++. ..++.|.|||..+|+.+++++..
T Consensus 270 eVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 270 EVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EEEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 378889988765 555542 23577999998877677654 45789999999999999888753
No 406
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.04 E-value=23 Score=36.14 Aligned_cols=103 Identities=16% Similarity=0.261 Sum_probs=64.3
Q ss_pred CEEEEEeCCCcEEEEECC--CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC---CC---eEEEE-ECCCC---CeeEE-
Q 004603 568 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DR---TVRVW-DTENP---DYSLR- 634 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~--t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~---Dg---~VrvW-Dl~~~---~~~l~- 634 (743)
..|+.+...++|.+|++. ..+.+.+|.. -+.|..+.++..|++|+|-=. .. .+|+| +.+.. ..+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444556789999987 3456666654 378999999999999998643 22 66765 32211 11111
Q ss_pred EEec---------------------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004603 635 TFTG---------------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 635 ~l~~---------------------h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg 673 (743)
.+.| -...+.+++.+|-..++++++ ++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 1222 233567888888766677544 468999976543
No 407
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.31 E-value=14 Score=40.93 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=54.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eE--E-EEEcc----cCCCEEEEEEcCCCCEEEEEeCC----
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TV--K-STLEE----HTQWITDVRFSPSLSRLATSSAD---- 618 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~-----~~--i-~~l~~----H~~~V~~vafsp~~~~LaSgs~D---- 618 (743)
-...+.++|.+++ +++ ++.+...++.|.+.. +. + ..+.. +...+..++|.|+|.+.++-+..
T Consensus 71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 3456889999888 444 444544444455321 21 1 12222 13347789999998876655521
Q ss_pred ---------------CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEE
Q 004603 619 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (743)
Q Consensus 619 ---------------g~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~S 658 (743)
+.|.-+|.+... +..+.........++|+|+|. ++++
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~--~e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGK--LRVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCe--EEEEecCcCCCccceECCCCC-EEEE
Confidence 345555555433 233322223457899999886 4444
No 408
>PRK13684 Ycf48-like protein; Provisional
Probab=88.12 E-value=25 Score=38.50 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=62.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCe-EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVL-WCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~I-Wd~~t~~-~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~ 632 (743)
.+.+.++.+.+++.+++++. .|.+.. +| +.++ -......-...++++.+.+++..++.+ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES- 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence 45689999999987776655 454432 22 1222 111222334678999999988876665 467765322333221
Q ss_pred EEEEec----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603 633 LRTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 633 l~~l~~----h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~ 674 (743)
-..... ....+.++.|.+++. +++ ++.+|.|. .....++
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLL-VSKDGGK 290 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEE-EeCCCCC
Confidence 111111 123478899998765 553 44466443 3444443
No 409
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.11 E-value=53 Score=40.45 Aligned_cols=125 Identities=13% Similarity=-0.001 Sum_probs=71.4
Q ss_pred cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC--CCc-
Q 004603 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KED- 654 (743)
Q Consensus 578 ~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~--g~~- 654 (743)
.||+++-. ..+..+.. ...+++....-+...++.++.++.+...++.........-+..+..|.|++++|- ++.
T Consensus 471 ~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred cEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 46666533 12333332 3445554445555678888878888888887655211112223467899999976 444
Q ss_pred --EEEEEeCCCcEEEEE-CCCCeeeEEE--ecc---Cc---eeeecCCCEEEEEecCCeEEE
Q 004603 655 --LLCSCDNNSEIRYWS-INNGSCAGVF--KVC---NL---MPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 655 --lL~Sgs~Dg~IrvWD-l~tg~~v~~~--~~~---~~---i~~s~~g~~l~sgs~Dg~I~v 705 (743)
+++.|..+..+.+.- +.....+... .+. .+ ..+-.+..||.++..||.+..
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 788887776655543 3333333222 111 11 223356789999999988765
No 410
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.02 E-value=44 Score=35.51 Aligned_cols=140 Identities=11% Similarity=0.009 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
-..|+-.|||..-+++...+.|--.|..+++....--+....-..|...||+..-++-+.. -|.-.|-++.......+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 5678888999999999888888888999988877666656666778888988877765444 455556655443222222
Q ss_pred --cCCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEE
Q 004603 638 --GHSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 638 --~h~~~V~sl~fsp~g~~lL~Sgs~D---------g~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~v 705 (743)
.-........|.+.|. +.+++... +.|+||+...|. +...+|..|+|..-++.-.+..|..
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQGG------GPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCCCC------CCcceEECCCCcEEEEeccccceEE
Confidence 2234567788999876 55566421 245555544321 2345777888877666555444443
No 411
>PRK10350 hypothetical protein; Provisional
Probab=87.01 E-value=2 Score=39.41 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=7.8
Q ss_pred cccccccchhh-HHHHH
Q 004603 68 NEKHSESAASY-IESQV 83 (743)
Q Consensus 68 ~~~~s~~a~qY-iq~q~ 83 (743)
+..++.....| |..++
T Consensus 21 N~~NNPnqpGY~ipSQQ 37 (145)
T PRK10350 21 NTLNNPNQPGYQIPSQQ 37 (145)
T ss_pred hccCCCCCCCCcCcHHH
Confidence 33444455667 44443
No 412
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.71 E-value=4.1 Score=41.87 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=50.2
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeEEE------Ee-------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRT------FT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 605 fsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~------l~-------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
+..++.+|++-+.+|.+++||+.+.+..+.. +. .....|..+.+..+|.- +++-+ +|..++||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~P-iV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVP-IVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCE-EEEEe-CCCEEEeccc
Confidence 3446788999999999999999986642222 11 24467888888877764 44554 5788999887
Q ss_pred CCeeeEEE
Q 004603 672 NGSCAGVF 679 (743)
Q Consensus 672 tg~~v~~~ 679 (743)
-+..+...
T Consensus 96 L~~W~~vs 103 (219)
T PF07569_consen 96 LGCWIRVS 103 (219)
T ss_pred cceeEEec
Confidence 66554433
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.59 E-value=2.5 Score=31.77 Aligned_cols=31 Identities=39% Similarity=0.623 Sum_probs=26.2
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 004603 556 SKVESCHFSPD-G--KLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 556 ~~V~siafspd-g--~~LaSgs~Dg~V~IWd~~t 586 (743)
+.|.+|.|+|+ + .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46999999984 4 5888888889999999985
No 414
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.32 E-value=23 Score=40.00 Aligned_cols=165 Identities=13% Similarity=0.072 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCeEEEEE-cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~-------t~~~i~~l-~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~ 629 (743)
..+..+...|.-+++. |..+.||+.. .+.....+ .++...+.+| ++.....|.|++|+--..
T Consensus 29 ~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~~ 98 (422)
T PF08801_consen 29 CSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESISH 98 (422)
T ss_dssp -EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-TT-
T ss_pred eEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccchh
Confidence 4444454455444443 7889999984 33333334 3444444433 344556889999975332
Q ss_pred CeeEEE-------------EecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCcee----eecCCC
Q 004603 630 DYSLRT-------------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMP----IILKGC 692 (743)
Q Consensus 630 ~~~l~~-------------l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~----~s~~g~ 692 (743)
...+.+ +....-.+......+.+ + +.+..+|.|.....+....+..+....... +.....
T Consensus 99 ~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~--~-I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~ 175 (422)
T PF08801_consen 99 LLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSG--F-IVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSS 175 (422)
T ss_dssp TT--EEEE------------------EEEEEEETTT--E-EEEETT--EEEEEE-TTS-EEEEE-TT-------------
T ss_pred hhhcCccccccccccceeeecCCceEEECCCCceEE--E-EEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccC
Confidence 211111 11111122223445543 3 345557777777666644444443321100 000000
Q ss_pred EEEEEecCCeEE-EEecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603 693 FILNSIFNCYLL-LHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 693 ~l~sgs~Dg~I~-vh~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.++.+- +. ..........+..+.....+++...+|.|.+|+-.
T Consensus 176 ~~~~~~----~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 176 SIFSSL----LPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --------------------EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeccc----cCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 111110 00 01111113333444446899999999999999753
No 415
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.82 E-value=28 Score=32.95 Aligned_cols=115 Identities=16% Similarity=0.083 Sum_probs=69.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC--------eEEEEEcccCCCEEEEEE---cC--CCCEEEEEeCCCeEEEEEC
Q 004603 560 SCHFSPDGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRF---SP--SLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 560 siafspdg~~LaSgs~Dg~V~IWd~~t~--------~~i~~l~~H~~~V~~vaf---sp--~~~~LaSgs~Dg~VrvWDl 626 (743)
.-.|......|+.++.-++|.|++.... ..++.+.- ...|++++- .| ....|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3345555557888888889999986532 23344432 345777654 33 244566665 678999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecC---CCcEEEEEeCCCcEEEEECCCCeeeEEE
Q 004603 627 ENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (743)
Q Consensus 627 ~~~~~~l~~l~~h~~~V~sl~fsp~---g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~ 679 (743)
..... ..++.-...|.++.+-.- ...+++.|+ ++.|.-||....+...+.
T Consensus 81 ~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCch--hhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence 87664 233344567888776321 123444444 778888887755554433
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=85.63 E-value=60 Score=35.52 Aligned_cols=138 Identities=14% Similarity=0.046 Sum_probs=73.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee
Q 004603 597 TQWITDVRFSPSLSRLATSSADRTVR-VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 597 ~~~V~~vafsp~~~~LaSgs~Dg~Vr-vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~ 675 (743)
...+.++.+.|++.+++++. .|.+. .+|-. +..-......-...++++.+.+++. +++.+ ..|.+++=..+.|..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 45688999999887666654 55443 33322 1111112223346789999999876 44343 456665333344432
Q ss_pred eEEEe--------ccCceeeecCCCEEEEEecCCeEEE-------Eeccc--c-----eEEEEecCCCCEEEEEeCCCeE
Q 004603 676 AGVFK--------VCNLMPIILKGCFILNSIFNCYLLL-------HRIFL--N-----LLSVSEWCNPDEISTSSWKDSC 733 (743)
Q Consensus 676 v~~~~--------~~~~i~~s~~g~~l~sgs~Dg~I~v-------h~~~v--~-----~l~v~~~~~~~~laSgs~DG~V 733 (743)
-.... ....+.+.+++..+ ..+.+|.+.. |.... . ...+.. .+....+..+..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVF-LDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEE-EEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEE-eCCCceEEECCCceE
Confidence 22111 11234556666544 4455665555 32210 0 111222 235567778899999
Q ss_pred EEeCCCc
Q 004603 734 CSHRELY 740 (743)
Q Consensus 734 ~iWd~~~ 740 (743)
..|+...
T Consensus 326 l~~~~~~ 332 (334)
T PRK13684 326 LRYVGSA 332 (334)
T ss_pred EEecCCC
Confidence 9998764
No 417
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.27 E-value=73 Score=36.13 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=42.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004603 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl 626 (743)
.+|++=+-||.+.+|+-+..-..+.+.. ----..+.|.+..+.|++++.+..|..|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 4677788899999998776544444433 222345677787889999999999999975
No 418
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.27 E-value=57 Score=34.94 Aligned_cols=122 Identities=13% Similarity=0.240 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------EEc--cc-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-------TLE--EH-TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~-------~l~--~H-~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~ 627 (743)
...|.|..++.++++--.++.+.++.++....+. .+. .+ ......++|+|....|+.+-.-.-++||.+.
T Consensus 131 pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 131 PETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 3456777777777777778888877665432111 111 12 4557789999988888888888888888765
Q ss_pred CCCee--EEEEecCC-------CCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe
Q 004603 628 NPDYS--LRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 628 ~~~~~--l~~l~~h~-------~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~ 680 (743)
..... +.....+. ..|.++.|++....+|+-+.+++.|...|+. |..+..+.
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 211 QSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred cCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 43211 11111222 3477889998888899889988888888876 44444443
No 419
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.19 E-value=58 Score=35.19 Aligned_cols=106 Identities=8% Similarity=0.075 Sum_probs=51.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEE---EEEcc---cCCCEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCC
Q 004603 566 DGKLLATGGHD-----KKAVLWCTESFTVK---STLEE---HTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENP 629 (743)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWd~~t~~~i---~~l~~---H~~~V~~vafsp~~~~LaSgs~-----Dg~VrvWDl~~~ 629 (743)
++.+++.|+.+ ..|..||+.+.+.. ..+.. ......++.+ ++.+++.|+. ...|.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 56677777754 34666777654431 12211 1111112222 3556666664 235888898875
Q ss_pred CeeEE-EEecCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEECCCCee
Q 004603 630 DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSC 675 (743)
Q Consensus 630 ~~~l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg----~IrvWDl~tg~~ 675 (743)
..... .+.. .......+..-+ ..+++.|+.++ .+.+||+.+.+.
T Consensus 150 ~W~~~~~~p~-~~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPG-EPRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCC-CCCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence 53111 1111 111111222223 34777777654 356889887654
No 420
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.10 E-value=15 Score=41.26 Aligned_cols=117 Identities=17% Similarity=0.190 Sum_probs=74.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i----~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~ 629 (743)
..++|.+|.||+|.+.||+--.|++|-+++....+.. .+.+..+..|....|..+.. +|.-. |.-|-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~-~~G~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFIT-DQGIEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEe-cCCeEEEEEchh
Confidence 4568999999999999999999999999987332221 11122344578888876533 33333 334666665554
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEECCC
Q 004603 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINN 672 (743)
Q Consensus 630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs-~Dg~IrvWDl~t 672 (743)
+..++..+.|.-.|.=..|+++-..+|.+.+ ..+++.=+-+++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 4456667778888888888888665444444 333333344443
No 421
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.06 E-value=56 Score=34.60 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEccc-CCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeE
Q 004603 558 VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL 633 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg--~V~IWd~~t~~~i~~l~~H-~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~~~l 633 (743)
.-.+.|..+|.++-+.+.-| .|+.+|+.+++.+....-. .-.-..++.. ++.|+--. .++...+||..+.+. +
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~-~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK-I 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE-E
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE-E
Confidence 45788877888888888776 6889999999876554321 2222233333 23444333 488999999988654 6
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec
Q 004603 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
.++. ..+.-+.|+. ++..++.|-+ ...|+++|..+.+.++.+..
T Consensus 124 ~~~~-y~~EGWGLt~--dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 124 GTFP-YPGEGWGLTS--DGKRLIMSDG-SSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEE--SSS--EEEE--CSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-
T ss_pred EEEe-cCCcceEEEc--CCCEEEEECC-ccceEEECCcccceEEEEEE
Confidence 6665 3455677874 4566776655 55899999988877766653
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.59 E-value=1.1e+02 Score=37.59 Aligned_cols=65 Identities=6% Similarity=0.067 Sum_probs=44.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCE-------------EEEEEcC--CCCEEEEEeC----------CCe
Q 004603 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-------------TDVRFSP--SLSRLATSSA----------DRT 620 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V-------------~~vafsp--~~~~LaSgs~----------Dg~ 620 (743)
++..|+.++.|+.|.-.|.++++.+..|.. .+.| ..+.-.| .+..+++|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 445788888999999999999998876632 2111 1111223 2446666643 688
Q ss_pred EEEEECCCCCe
Q 004603 621 VRVWDTENPDY 631 (743)
Q Consensus 621 VrvWDl~~~~~ 631 (743)
|+-+|+++++.
T Consensus 338 I~A~Da~TGkl 348 (764)
T TIGR03074 338 IRAFDVNTGAL 348 (764)
T ss_pred EEEEECCCCcE
Confidence 99999999875
No 423
>PHA03098 kelch-like protein; Provisional
Probab=84.49 E-value=20 Score=41.72 Aligned_cols=106 Identities=8% Similarity=0.032 Sum_probs=52.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEE--EcccCCCEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCee
Q 004603 566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 632 (743)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWd~~t~~~i~~--l~~H~~~V~~vafsp~~~~LaSgs~D------g~VrvWDl~~~~~~ 632 (743)
++++++.||.+ ..+..||..+...... +.........+. -++..++.|+.+ ..|.+||+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 67788888865 3466788766443211 111111111122 245666666632 45888998765431
Q ss_pred EE-EEecCCCCeEEEEEecCCCcEEEEEeCCC--------cEEEEECCCCeee
Q 004603 633 LR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS--------EIRYWSINNGSCA 676 (743)
Q Consensus 633 l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--------~IrvWDl~tg~~v 676 (743)
.. .+...... .+++.. + ..+++.|+.+. .+.+||..+++..
T Consensus 420 ~~~~~p~~r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 420 KGSPLPISHYG-GCAIYH-D-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred ecCCCCccccC-ceEEEE-C-CEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 11 01101111 122222 2 34666666432 3888998877643
No 424
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.32 E-value=3.4 Score=31.00 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.4
Q ss_pred CCeEEEEEecCCC--cEEEEEeCCCcEEEEECCC
Q 004603 641 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 641 ~~V~sl~fsp~g~--~lL~Sgs~Dg~IrvWDl~t 672 (743)
+.|.++.|+|... .+|+..-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998654 6887777788999999995
No 425
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.90 E-value=67 Score=35.86 Aligned_cols=137 Identities=10% Similarity=0.052 Sum_probs=74.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC----CCCE--E-EEEeCC---CeEEEEECCCCCeeEEE
Q 004603 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--L-ATSSAD---RTVRVWDTENPDYSLRT 635 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp----~~~~--L-aSgs~D---g~VrvWDl~~~~~~l~~ 635 (743)
...+|+....++-+.+||+. ++.+..+.. +.+.-|.... .+.. | +++..+ .+|++|.+......+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 44577777788889999987 455555532 2333332211 2332 3 333332 47999977632222443
Q ss_pred Eec-------CCCCeEEEEEe--c-CCCcEEEEEeCCCcEEEEECC---CC----eeeEEEeccC---ceeeecCCCEEE
Q 004603 636 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKVCN---LMPIILKGCFIL 695 (743)
Q Consensus 636 l~~-------h~~~V~sl~fs--p-~g~~lL~Sgs~Dg~IrvWDl~---tg----~~v~~~~~~~---~i~~s~~g~~l~ 695 (743)
+.. -...++.+|+- + +|..+++....+|.+..|-+. .+ +.++.|...+ .+.+.....+|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 321 12347888874 3 355666677888988888764 33 4577777543 345555566777
Q ss_pred EEecCCeEEE
Q 004603 696 NSIFNCYLLL 705 (743)
Q Consensus 696 sgs~Dg~I~v 705 (743)
.+-++.-|..
T Consensus 224 vgEE~~GIW~ 233 (381)
T PF02333_consen 224 VGEEDVGIWR 233 (381)
T ss_dssp EEETTTEEEE
T ss_pred EecCccEEEE
Confidence 7766644433
No 426
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.83 E-value=45 Score=40.98 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=71.9
Q ss_pred CCCCCeEEEEEc---C----CCCEEEEEeCCCcEEEEEC------CC---------CeEEEEEccc---CCCEEEEEEcC
Q 004603 553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCT------ES---------FTVKSTLEEH---TQWITDVRFSP 607 (743)
Q Consensus 553 ~H~~~V~siafs---p----dg~~LaSgs~Dg~V~IWd~------~t---------~~~i~~l~~H---~~~V~~vafsp 607 (743)
.-..+|..|+|. . ..++|++= ....+.|+.. .. ..++..+..+ .....+|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 455678888887 2 22355544 3455666651 11 1234444322 23577899999
Q ss_pred -CCCEEEEEeCCCeEEEEECCC----CCeeEEEEecCCC----------CeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603 608 -SLSRLATSSADRTVRVWDTEN----PDYSLRTFTGHST----------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 608 -~~~~LaSgs~Dg~VrvWDl~~----~~~~l~~l~~h~~----------~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t 672 (743)
+...||..+..|...|||+.. ....+.....+.+ .-..|+|.++...+| .|+ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 467899999999999999921 1111111111222 234788988766566 444 45799999987
Q ss_pred Cee
Q 004603 673 GSC 675 (743)
Q Consensus 673 g~~ 675 (743)
...
T Consensus 234 ~~~ 236 (765)
T PF10214_consen 234 NWQ 236 (765)
T ss_pred CCc
Confidence 754
No 427
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.77 E-value=61 Score=39.83 Aligned_cols=125 Identities=10% Similarity=0.101 Sum_probs=77.3
Q ss_pred eeEEEeeC---CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----eEEEEEcccCC----------CEEEEEEc
Q 004603 546 TEFQLIPA---STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQ----------WITDVRFS 606 (743)
Q Consensus 546 ~~~~~l~~---H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~-----~~i~~l~~H~~----------~V~~vafs 606 (743)
.++..+.. -..+..+|+|+| +.+.||+-...|...||++... ..+.....+.+ .-..|.|.
T Consensus 133 ~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~ 212 (765)
T PF10214_consen 133 NPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV 212 (765)
T ss_pred ceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec
Confidence 44444442 223577899999 6679999999999999999211 11111111122 23478888
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeE-EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603 607 PSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 607 p~~~~LaSgs~Dg~VrvWDl~~~~~~l-~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t 672 (743)
++.+.|+.++ ...+.++|+++....- .........|.++.-+|.....++.-. ..+|...|+..
T Consensus 213 ~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 213 SDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 8877777775 5678899998765411 122234467888888887333222222 35788888876
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.06 E-value=22 Score=38.81 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEE----cccCCCEEEEEEcCC---CCEEE-EEeCC--------
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLA-TSSAD-------- 618 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~---i~~l----~~H~~~V~~vafsp~---~~~La-Sgs~D-------- 618 (743)
.+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|+ +.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 678999999987775 5599999999 33333 2222 223456899999994 23333 33311
Q ss_pred CeEEEEECCCC-------CeeEEEEec---CCCCeEEEEEecCCCcEEEEEeCC
Q 004603 619 RTVRVWDTENP-------DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 619 g~VrvWDl~~~-------~~~l~~l~~---h~~~V~sl~fsp~g~~lL~Sgs~D 662 (743)
..|.-|.+... +..+..+.. .......|.|.|+|. |+++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCC
Confidence 23433433332 111122222 223456799999984 55555433
No 429
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.97 E-value=72 Score=34.26 Aligned_cols=175 Identities=10% Similarity=0.016 Sum_probs=101.7
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
.++....++.-+++++..+.. ..+++..+... +.-+++.. .|++...+..|.-..+.|+.+
T Consensus 97 ~yvyvad~ssGL~IvDIS~P~----------------sP~~~~~lnt~-gyaygv~v--sGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 97 EYVYVADWSSGLRIVDISTPD----------------SPTLIGFLNTD-GYAYGVYV--SGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred cEEEEEcCCCceEEEeccCCC----------------CcceeccccCC-ceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence 455555567777777655442 22233323221 33455555 588888888666677888865
Q ss_pred C---eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC-CeEEEEEecCCCcEEEEEeCC
Q 004603 587 F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 587 ~---~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~-~V~sl~fsp~g~~lL~Sgs~D 662 (743)
. .....+.........++.+ |++-+.+..|+-+.+-|+.++..++..-.-..+ .+.++..+++ +.+++.. |
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy-~ 232 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVY-D 232 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEc-c
Confidence 3 3344455555555677775 678888889999999999887765433222223 6777777765 3333333 4
Q ss_pred CcEEEEECCCCeeeEEEec---cCce---eeecCCCEEEEEecCCeEEE
Q 004603 663 SEIRYWSINNGSCAGVFKV---CNLM---PIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~---~~~i---~~s~~g~~l~sgs~Dg~I~v 705 (743)
..|.+-|..+.+....+.. .+.. .+...+.+......+.-+.+
T Consensus 233 egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~ 281 (370)
T COG5276 233 EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPI 281 (370)
T ss_pred cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCcee
Confidence 4578888877664444332 1111 23455665555544443333
No 430
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.83 E-value=6.1 Score=46.29 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=44.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----CCeeEEE-Eec--------------------CCCCeEEEEEec---CCCcEEEE
Q 004603 607 PSLSRLATSSADRTVRVWDTEN----PDYSLRT-FTG--------------------HSTTVMSLDFHP---SKEDLLCS 658 (743)
Q Consensus 607 p~~~~LaSgs~Dg~VrvWDl~~----~~~~l~~-l~~--------------------h~~~V~sl~fsp---~g~~lL~S 658 (743)
++...|+.+..||.+...+... +...... +.. ..+.+.+++++. ++..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566777788888888777653 1111111 110 123455666665 24567889
Q ss_pred EeCCCcEEEEECCCCeeeEEEe
Q 004603 659 CDNNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 659 gs~Dg~IrvWDl~tg~~v~~~~ 680 (743)
.+.|++||+||+.+++|+.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977654
No 431
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.78 E-value=5.7 Score=39.14 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=26.8
Q ss_pred CCeEEEEEecC-----CCcEEEEEeCCCcEEEEECCC
Q 004603 641 TTVMSLDFHPS-----KEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 641 ~~V~sl~fsp~-----g~~lL~Sgs~Dg~IrvWDl~t 672 (743)
..|.+++|+|. ++.+|++...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 47899999994 456899999999999998763
No 432
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=82.62 E-value=27 Score=38.86 Aligned_cols=88 Identities=14% Similarity=0.030 Sum_probs=46.0
Q ss_pred EEEcCCCCEE-EEEeCCCc--EEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 561 CHFSPDGKLL-ATGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 561 iafspdg~~L-aSgs~Dg~--V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
=+|.+||+.| +++..|+. +.+.|+.+++....-.+-........++|+.+.++-...+..|+-.|+++.+. ...+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence 3567788654 44444654 55668888776655443222233455678878876665667899999998765 34455
Q ss_pred cCCCCeEEEEEe
Q 004603 638 GHSTTVMSLDFH 649 (743)
Q Consensus 638 ~h~~~V~sl~fs 649 (743)
-....+-...|.
T Consensus 120 ~p~~~~g~gt~v 131 (386)
T PF14583_consen 120 VPDDWKGYGTWV 131 (386)
T ss_dssp --TTEEEEEEEE
T ss_pred CCccccccccee
Confidence 455666555664
No 433
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.43 E-value=77 Score=34.24 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-eEEEEEcc-----cCCCEEEEEEcCCCC------------EEE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTE------SF-TVKSTLEE-----HTQWITDVRFSPSLS------------RLA 613 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~------t~-~~i~~l~~-----H~~~V~~vafsp~~~------------~La 613 (743)
-+.|+|+|.+.+-++...-++..+||.. .. ..+.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4579999999888888888899999986 12 22333331 134577777775322 367
Q ss_pred EEeCCCeEEEEECCCCCe----eEEEEe-cCCCCe-EEEEEecC--CCcEEEEEeCCCcEEEEECC
Q 004603 614 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHPS--KEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 614 Sgs~Dg~VrvWDl~~~~~----~l~~l~-~h~~~V-~sl~fsp~--g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
.+++||+|.-|...-... .+..+. +....| ..+++... +..|+++--..++|.|||-.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 888999999998532221 122222 112333 45666543 55677676778999999865
No 434
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.35 E-value=7.4 Score=40.03 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=46.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-------c-------ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004603 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 563 fspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l-------~-------~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~ 628 (743)
+..++.+|++-..+|.+++||+.+.+.+..- . .....|..+.++.+|.-|++-+ +|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3447888999999999999999987654321 1 2446677788887777666654 56778887654
No 435
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=82.27 E-value=12 Score=44.26 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=50.7
Q ss_pred CCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEECC---------CCeEEEEE--cccC-CCEEEEEEcCCCCEEEEEeCC
Q 004603 553 ASTSKVESCHFS--PDGKLLATGGHDKKAVLWCTE---------SFTVKSTL--EEHT-QWITDVRFSPSLSRLATSSAD 618 (743)
Q Consensus 553 ~H~~~V~siafs--pdg~~LaSgs~Dg~V~IWd~~---------t~~~i~~l--~~H~-~~V~~vafsp~~~~LaSgs~D 618 (743)
...+.|.++.|. |++..+++-|..+.|.+|.-- +..+++.+ ..|+ .+|.+..|.++|.+++.+ +
T Consensus 70 ~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--G 147 (631)
T PF12234_consen 70 SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--G 147 (631)
T ss_pred cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--C
Confidence 456789999996 488999999999999999531 12233332 3454 579999999998766654 4
Q ss_pred CeEEEEE
Q 004603 619 RTVRVWD 625 (743)
Q Consensus 619 g~VrvWD 625 (743)
..+.|+|
T Consensus 148 Nqlfv~d 154 (631)
T PF12234_consen 148 NQLFVFD 154 (631)
T ss_pred CEEEEEC
Confidence 5677776
No 436
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=82.19 E-value=39 Score=39.36 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=84.1
Q ss_pred CCeEEEEEcCCCCEE-EEEe--CCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCC----CCEEEEEeCCCeEEEEECCC
Q 004603 556 SKVESCHFSPDGKLL-ATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 556 ~~V~siafspdg~~L-aSgs--~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~----~~~LaSgs~Dg~VrvWDl~~ 628 (743)
.+|..++|. ||+.+ .|.- ..|.+++=|. +.+..| ..|..+.|.|- ...+...-..+.|.||-+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 368889997 66644 3432 3444544332 233333 34889999984 33566666789999998752
Q ss_pred -----CCeeEEEEecCC-C----CeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe--eeEEEecc---CceeeecCCCE
Q 004603 629 -----PDYSLRTFTGHS-T----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKVC---NLMPIILKGCF 693 (743)
Q Consensus 629 -----~~~~l~~l~~h~-~----~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~--~v~~~~~~---~~i~~s~~g~~ 693 (743)
.+. +.....+- . -...+.|||....+.+-...| .-.+++++... ....++.. .+.+|..||..
T Consensus 92 s~~e~~K~-l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKL-LMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR 169 (671)
T ss_pred Cccccccc-eeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE
Confidence 111 22211111 1 124678999876433333333 22345555332 22233322 44678899998
Q ss_pred EEEEecC-CeEEEEecccceEEEEecC
Q 004603 694 ILNSIFN-CYLLLHRIFLNLLSVSEWC 719 (743)
Q Consensus 694 l~sgs~D-g~I~vh~~~v~~l~v~~~~ 719 (743)
|+++-.. =.-.+|+..-+.+.-+..|
T Consensus 170 LVVAvGSsLHSyiWd~~qKtL~~Csfc 196 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQKTLHRCSFC 196 (671)
T ss_pred EEEEeCCeEEEEEecCchhhhhhCCcc
Confidence 7776443 2345687766554444433
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.10 E-value=37 Score=41.22 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=48.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CC--eeEEEE--------ecCCCCeEEEEEecCC---CcE
Q 004603 598 QWITDVRFSPSLSRLATSSADRTVRVWDTEN---------PD--YSLRTF--------TGHSTTVMSLDFHPSK---EDL 655 (743)
Q Consensus 598 ~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~---------~~--~~l~~l--------~~h~~~V~sl~fsp~g---~~l 655 (743)
-.|..|.++|+|.+|+..|..+.+-+.=.+. ++ ...+++ ..+...|..+.|||.+ .++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4688899999999998888766543332221 11 111121 1334578899999974 455
Q ss_pred EEEEeCCCcEEEEECCCC
Q 004603 656 LCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 656 L~Sgs~Dg~IrvWDl~tg 673 (743)
+ .=..|++||+||+...
T Consensus 165 ~-vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 V-VLTSDNTLRLYDISDP 181 (717)
T ss_pred E-EEecCCEEEEEecCCC
Confidence 5 4445999999999753
No 438
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.03 E-value=18 Score=37.39 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=43.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEE
Q 004603 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLAT 614 (743)
Q Consensus 561 iafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaS 614 (743)
++...+|++.+++-..++|...|..+++.+..+.-.+..|+|++|-- +-..+++
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 33455888888888889999999999999999998899999999953 3344433
No 439
>PRK10115 protease 2; Provisional
Probab=81.80 E-value=65 Score=39.05 Aligned_cols=99 Identities=7% Similarity=0.045 Sum_probs=60.6
Q ss_pred CCEEEEEEcCCCCEEEEEeC-CC----eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC-----CcEEE
Q 004603 598 QWITDVRFSPSLSRLATSSA-DR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 667 (743)
Q Consensus 598 ~~V~~vafsp~~~~LaSgs~-Dg----~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D-----g~Irv 667 (743)
-.+..+.|+|++++|+.+.. +| .|++.|+.++......+.+ . -..++|.+++..++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999998866543 23 5888899876532222322 1 25699999988777765533 36888
Q ss_pred EECCCC--eeeEEEeccCc-----eeeecCCCEEEEEec
Q 004603 668 WSINNG--SCAGVFKVCNL-----MPIILKGCFILNSIF 699 (743)
Q Consensus 668 WDl~tg--~~v~~~~~~~~-----i~~s~~g~~l~sgs~ 699 (743)
+++.++ +-...+..... ...+.++.+++..+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~ 242 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLA 242 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEE
Confidence 898887 33334442111 122347777665543
No 440
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.38 E-value=28 Score=36.10 Aligned_cols=102 Identities=11% Similarity=0.029 Sum_probs=65.8
Q ss_pred EEEEEcCCCCEE-EEEeCCCcEEEEE--CCCCe-----EEEEEcc----cCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004603 559 ESCHFSPDGKLL-ATGGHDKKAVLWC--TESFT-----VKSTLEE----HTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 559 ~siafspdg~~L-aSgs~Dg~V~IWd--~~t~~-----~i~~l~~----H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl 626 (743)
+.++|+.+.+.+ ++-+.+.+|.-|| +.++. .+..++. ..-.--.+++..+|.+++++-..++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 467888766644 5556778888888 44432 2222221 0011122344667888888888999999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCC-CcEEEEEeC
Q 004603 627 ENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDN 661 (743)
Q Consensus 627 ~~~~~~l~~l~~h~~~V~sl~fsp~g-~~lL~Sgs~ 661 (743)
.+++. +.+++-....|+|+||--.. ..+++++..
T Consensus 241 ~tGK~-L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 241 TTGKI-LLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CCCcE-EEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 99886 77777778899999996432 224445443
No 441
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=81.27 E-value=78 Score=33.52 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=67.8
Q ss_pred EEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--C---CCCeEEE
Q 004603 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--H---STTVMSL 646 (743)
Q Consensus 572 Sgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~--h---~~~V~sl 646 (743)
-.=.++++.+||..+.+.+.++.-. +.=+.++ .++..|+.+.....|+++|..+... ++.+.- . -..++-|
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEE
T ss_pred EEecCCeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeE
Confidence 3345788999999999998888543 3445665 3567788877788999999887654 333321 1 2356778
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec
Q 004603 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 647 ~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
.|. +| .++|=.-....|...|..+|+++..+..
T Consensus 181 E~i-~G-~IyANVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 181 EYI-NG-KIYANVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp EEE-TT-EEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred EEE-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence 887 33 4776666677899999999999988763
No 442
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.91 E-value=8.9 Score=47.38 Aligned_cols=107 Identities=11% Similarity=-0.057 Sum_probs=68.5
Q ss_pred EEEEEEcCCCCEE--EEEeCCCeEEEEECCCCCeeE----EEEe------cCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 004603 600 ITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (743)
Q Consensus 600 V~~vafsp~~~~L--aSgs~Dg~VrvWDl~~~~~~l----~~l~------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Irv 667 (743)
|..+...+|+... +..+.+-.|.+||+++..... .-+. .....+.++.|+|.-....+.+..|+.|+|
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 4444445565543 333345689999997643211 1111 122345678899986666778888999999
Q ss_pred EECCCCe-eeEEEe---ccCceeeecCCCEEEEEecCCeEEEE
Q 004603 668 WSINNGS-CAGVFK---VCNLMPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 668 WDl~tg~-~v~~~~---~~~~i~~s~~g~~l~sgs~Dg~I~vh 706 (743)
..+..-. .+..+. ..++++|++.|.-++.|...|++.-+
T Consensus 183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQY 225 (1405)
T ss_pred hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEe
Confidence 8776432 222222 34678999999999999999987763
No 443
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.74 E-value=53 Score=37.63 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=78.3
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603 566 DGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 566 dg~~La-Sgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~-------~LaSgs~Dg~VrvWDl~~~~~~l~~l~ 637 (743)
|..+|+ .|+...++.--|++.|+.+..+.-|... -|.|.|..+ .-+.|-.|..|.-.|.|.....+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 444444 4556667888899999999999888764 567887422 234555677777677765442222211
Q ss_pred cCCCCeEEEEEec---CCCcEEEEEeCCCcEEEEECCCCeeeEEEec----cCceeeecCCCEEEEEecC
Q 004603 638 GHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 638 ~h~~~V~sl~fsp---~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~l~sgs~D 700 (743)
....++--.|+. ....+++.++..|-||+||.-.......+.+ ...+.++.+|.++++.+..
T Consensus 556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 111222222222 1123678899999999999643322222222 2346677889888877755
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.55 E-value=41 Score=40.18 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
.+.+..+.|+.+.. |++-..||+|+||++-.
T Consensus 83 ~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 83 HGELIGMGWSDDEE-LICVQKDGTVHVYGLLG 113 (829)
T ss_pred CCCeeeecccCCce-EEEEeccceEEEeecch
Confidence 34788999997665 55557899999999753
No 445
>PHA03098 kelch-like protein; Provisional
Probab=80.01 E-value=23 Score=41.20 Aligned_cols=105 Identities=8% Similarity=0.054 Sum_probs=51.1
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEE--EcccCCCEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCC
Q 004603 566 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--------RTVRVWDTENP 629 (743)
Q Consensus 566 dg~~LaSgs~D------g~V~IWd~~t~~~i~~--l~~H~~~V~~vafsp~~~~LaSgs~D--------g~VrvWDl~~~ 629 (743)
++++++.||.+ +.|.+||..+.+.... +........++.. ++..++.|+.+ ..+.+||+.+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 66777777732 3578889876443221 1111111122222 45566666543 23888998875
Q ss_pred CeeEEE-EecCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEECCCCee
Q 004603 630 DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSC 675 (743)
Q Consensus 630 ~~~l~~-l~~h~~~V~sl~fsp~g~~lL~Sgs~D-----g~IrvWDl~tg~~ 675 (743)
...... +.........+.+ + ..+++.|+.+ ..|.+||..+.+.
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--N-NKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ceeeCCCCCcccccceEEEE--C-CEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 531111 1111111112222 3 3466666644 3677788776643
No 446
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=79.76 E-value=96 Score=33.60 Aligned_cols=139 Identities=16% Similarity=0.075 Sum_probs=68.1
Q ss_pred EcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC-
Q 004603 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN- 671 (743)
Q Consensus 593 l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~- 671 (743)
..+-.+.+..+...+++.+++++.....+.-||.-.... ......-...|.++.|.|++. +.+ ....|.|++=+..
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPD 216 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TT
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCC
Confidence 344557788898899999999988777778888654322 122223457899999999976 433 3367888887722
Q ss_pred CCeeeEE--Ee----cc--CceeeecCCCEEEEEecCCeEEE-------Eecc-------cceEEEEecCCCCEEEEEeC
Q 004603 672 NGSCAGV--FK----VC--NLMPIILKGCFILNSIFNCYLLL-------HRIF-------LNLLSVSEWCNPDEISTSSW 729 (743)
Q Consensus 672 tg~~v~~--~~----~~--~~i~~s~~g~~l~sgs~Dg~I~v-------h~~~-------v~~l~v~~~~~~~~laSgs~ 729 (743)
..+.-.. .. +. -.+.+.++....+ ++..|.+.+ |... .....+.+.. +..-+..+.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~~~gf~lG~ 294 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVN-PDKGFVLGQ 294 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEE-EESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEE-TTEEEEE-S
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEE-EeCCccEEEeCCCCccceECccccCCCCceEEEEEcC-CCceEEECC
Confidence 2221111 00 01 1134555544444 555556665 3221 1223333332 457778888
Q ss_pred CCeEEEe
Q 004603 730 KDSCCSH 736 (743)
Q Consensus 730 DG~V~iW 736 (743)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 9988776
No 447
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.66 E-value=13 Score=42.51 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=42.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccC--------------------CCEEEEEEcCCC---CEE
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT--------------------QWITDVRFSPSL---SRL 612 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~--------------------~~V~~vafsp~~---~~L 612 (743)
-.|..|..++.|..++-+|.||.+.++=.+....-..++... -.+.-++|||+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 347888899999999999999977665322111111111111 124456676642 445
Q ss_pred EEEeCCCeEEEEECCC
Q 004603 613 ATSSADRTVRVWDTEN 628 (743)
Q Consensus 613 aSgs~Dg~VrvWDl~~ 628 (743)
+.-+.|.+||+||+..
T Consensus 184 ~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEecCcEEEEEecCC
Confidence 5555677777776654
No 448
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.10 E-value=23 Score=40.37 Aligned_cols=96 Identities=15% Similarity=0.238 Sum_probs=62.2
Q ss_pred EEeCCCcEEEEECCC-CeEEEEEcccCCCEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 004603 572 TGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSP----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (743)
Q Consensus 572 Sgs~Dg~V~IWd~~t-~~~i~~l~~H~~~V~~vafsp----~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl 646 (743)
+|-.|..|.-.|.+- +..+... .....++.-.|+. ...++|.++..|-||+||--. ......+.+....|..|
T Consensus 532 vGlS~~svFrIDPR~~gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~i 609 (776)
T COG5167 532 VGLSDYSVFRIDPRARGNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHI 609 (776)
T ss_pred EeecccceEEecccccCCceeee-eehhccccccccccccccCceEEEecCCCceeeehhhc-chhhhcCcccccceeee
Confidence 344456665556543 3222222 2233333334433 456899999999999999542 22244566667789999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECC
Q 004603 647 DFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 647 ~fsp~g~~lL~Sgs~Dg~IrvWDl~ 671 (743)
+...+|.++||+|- ..|-+.|++
T Consensus 610 dvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 610 DVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred EeecCCcEEEEeec--ceEEEEecc
Confidence 99999999998885 578888875
No 449
>PHA02790 Kelch-like protein; Provisional
Probab=79.00 E-value=90 Score=36.02 Aligned_cols=103 Identities=10% Similarity=0.088 Sum_probs=52.2
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCeEEE--EEcccCCCEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeEE-EEe
Q 004603 566 DGKLLATGGHD--KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLR-TFT 637 (743)
Q Consensus 566 dg~~LaSgs~D--g~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp~~~~LaSgs~Dg---~VrvWDl~~~~~~l~-~l~ 637 (743)
++.+.+.||.+ ..|..||..+..... .+.........+.+ ++...+.|+.++ .+.+||.++...... .+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 67777888764 357788876543322 12111111222222 466677777653 477888876543111 011
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeee
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v 676 (743)
........+.+ + ..+++.|+ .+.+||.++++..
T Consensus 396 ~~r~~~~~~~~--~-~~IYv~GG---~~e~ydp~~~~W~ 428 (480)
T PHA02790 396 YPHYKSCALVF--G-RRLFLVGR---NAEFYCESSNTWT 428 (480)
T ss_pred CccccceEEEE--C-CEEEEECC---ceEEecCCCCcEe
Confidence 01111122222 2 34666664 5778998877553
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=77.55 E-value=54 Score=31.04 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=47.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------eeEEEEecCCCCeEEEEEec----CCCcEEEEEeCCCcEEEEE
Q 004603 601 TDVRFSPSLSRLATSSADRTVRVWDTENPD-------YSLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWS 669 (743)
Q Consensus 601 ~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~-------~~l~~l~~h~~~V~sl~fsp----~g~~lL~Sgs~Dg~IrvWD 669 (743)
..-+|......|+.++.-+.|.|++..... ..+..+. -...|++|+--+ ++..+|+.|+ ...|-.||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344666666678888888999999876432 1233333 345677776443 2455776777 45799999
Q ss_pred CCCCeee
Q 004603 670 INNGSCA 676 (743)
Q Consensus 670 l~tg~~v 676 (743)
+.....+
T Consensus 80 V~~N~d~ 86 (136)
T PF14781_consen 80 VENNSDL 86 (136)
T ss_pred cccCchh
Confidence 9876544
No 451
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=76.34 E-value=51 Score=37.29 Aligned_cols=63 Identities=19% Similarity=0.104 Sum_probs=33.7
Q ss_pred CCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEE---ec---------------CCCCeEEEEEecCCCcEEEE
Q 004603 598 QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTF---TG---------------HSTTVMSLDFHPSKEDLLCS 658 (743)
Q Consensus 598 ~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~~l~~l---~~---------------h~~~V~sl~fsp~g~~lL~S 658 (743)
.-|++|.++.|.++|+.+++ +|.||.||+..+..+..+- .| -.+...-|..+.||+.+.+|
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 45899999999999877765 9999999998766544332 11 11233567788888888877
Q ss_pred Ee
Q 004603 659 CD 660 (743)
Q Consensus 659 gs 660 (743)
.|
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 65
No 452
>PLN02153 epithiospecifier protein
Probab=76.15 E-value=1.2e+02 Score=32.92 Aligned_cols=64 Identities=8% Similarity=0.005 Sum_probs=33.0
Q ss_pred CCCEEEEEeCC-----------CcEEEEECCCCeEEEE--Ec---ccCCCEEEEEEcCCCCEEEEEeCC-----------
Q 004603 566 DGKLLATGGHD-----------KKAVLWCTESFTVKST--LE---EHTQWITDVRFSPSLSRLATSSAD----------- 618 (743)
Q Consensus 566 dg~~LaSgs~D-----------g~V~IWd~~t~~~i~~--l~---~H~~~V~~vafsp~~~~LaSgs~D----------- 618 (743)
++++++.|+.+ ..|.+||..+.+-... .. ........+.+ ++++++.++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~ 214 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDY 214 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccce
Confidence 56677777754 2467788876443221 10 01111122222 45555555432
Q ss_pred --CeEEEEECCCCCe
Q 004603 619 --RTVRVWDTENPDY 631 (743)
Q Consensus 619 --g~VrvWDl~~~~~ 631 (743)
..|.+||+.+...
T Consensus 215 ~~~~v~~yd~~~~~W 229 (341)
T PLN02153 215 ESNAVQFFDPASGKW 229 (341)
T ss_pred ecCceEEEEcCCCcE
Confidence 4588899887654
No 453
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=76.11 E-value=1.3e+02 Score=33.16 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=61.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcccC-CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC---C
Q 004603 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---T 641 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~-~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~---~ 641 (743)
+|+ |+.++.++.+..+|.++++.+-...... ..+..-.+-.+ ..++.++.|+.+...|..++.. +..+..-. .
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~-~~v~~~s~~g~~~al~~~tG~~-~W~~~~~~~~~~ 187 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGD-GTVYVGTDDGHLYALNADTGTL-KWTYETPAPLSL 187 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcC-cEEEEecCCCeEEEEEccCCcE-EEEEecCCcccc
Confidence 665 7777888889999988888877776555 11111111112 3444444788888888887664 33322111 1
Q ss_pred CeEEEEEecCCCcEEEEEeC--CCcEEEEECCCCeeeEEEe
Q 004603 642 TVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 642 ~V~sl~fsp~g~~lL~Sgs~--Dg~IrvWDl~tg~~v~~~~ 680 (743)
.+.+--...++ .++.+.. ++.+.-.|+.+|..+...+
T Consensus 188 ~~~~~~~~~~~--~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 188 SIYGSPAIASG--TVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred ccccCceeecc--eEEEecCCCcceEEEEEccCCcEeeeee
Confidence 11111111122 3334444 5567777888887766643
No 454
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.46 E-value=90 Score=35.82 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEE----c-ccCCCEEEEEEcCCC
Q 004603 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTL----E-EHTQWITDVRFSPSL 609 (743)
Q Consensus 554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~--i~~l----~-~H~~~V~~vafsp~~ 609 (743)
.-...+.|+|.|||++|++--..|.|++++..++.. +..+ . .-......|+|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344578999999998887766569999998654432 2111 1 124668999999874
No 455
>PHA02790 Kelch-like protein; Provisional
Probab=74.24 E-value=60 Score=37.43 Aligned_cols=102 Identities=11% Similarity=0.023 Sum_probs=51.0
Q ss_pred CCCEEEEEeCCC---cEEEEECCCCeEEEE--EcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE-EEecC
Q 004603 566 DGKLLATGGHDK---KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TFTGH 639 (743)
Q Consensus 566 dg~~LaSgs~Dg---~V~IWd~~t~~~i~~--l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~-~l~~h 639 (743)
+|++.+.||.++ .+..||.++..-... +.........+.+ ++...+.| |.+-+||.++...... .+...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence 677778887653 467888776443221 1111111222222 34555555 4577899877654211 11111
Q ss_pred CCCeEEEEEecCCCcEEEEEeCC-----CcEEEEECCCCee
Q 004603 640 STTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSC 675 (743)
Q Consensus 640 ~~~V~sl~fsp~g~~lL~Sgs~D-----g~IrvWDl~tg~~ 675 (743)
.... +++.. + ..+++.|+.+ ..|.+||..+++.
T Consensus 437 r~~~-~~~v~-~-~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 437 RDNP-ELIIV-D-NKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred cccc-EEEEE-C-CEEEEECCcCCCcccceEEEEECCCCeE
Confidence 1222 23332 2 3477777754 3466777766543
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=73.03 E-value=9.2 Score=27.52 Aligned_cols=32 Identities=9% Similarity=0.187 Sum_probs=26.8
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeeEEEec
Q 004603 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 650 p~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
|+++.+++++..++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56778888888899999999999888777664
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=73.03 E-value=23 Score=41.47 Aligned_cols=71 Identities=23% Similarity=0.202 Sum_probs=42.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCC----CeEEEE--Ecc--------------------cCCCEEEEEEcC----CCCEEEE
Q 004603 565 PDGKLLATGGHDKKAVLWCTES----FTVKST--LEE--------------------HTQWITDVRFSP----SLSRLAT 614 (743)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWd~~t----~~~i~~--l~~--------------------H~~~V~~vafsp----~~~~LaS 614 (743)
++...|+.+..||.+....... +..... +.. ....+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666788888899887776553 111111 111 123456666666 6789999
Q ss_pred EeCCCeEEEEECCCCCeeEEEE
Q 004603 615 SSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 615 gs~Dg~VrvWDl~~~~~~l~~l 636 (743)
.+.|+++|+||+.++.+ +.+.
T Consensus 236 l~~D~~LRiW~l~t~~~-~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC-LATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCE-EEEE
T ss_pred EeCCCeEEEEECCCCeE-EEEe
Confidence 99999999999998765 4443
No 458
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=72.57 E-value=1.6e+02 Score=32.74 Aligned_cols=148 Identities=19% Similarity=0.105 Sum_probs=77.2
Q ss_pred EEEEcCCCCEEEEEeCCC-----------cEEEEECCCCeE--EEEEcccCCC--EEEEEEcCCCCEEEEE-eC--C-Ce
Q 004603 560 SCHFSPDGKLLATGGHDK-----------KAVLWCTESFTV--KSTLEEHTQW--ITDVRFSPSLSRLATS-SA--D-RT 620 (743)
Q Consensus 560 siafspdg~~LaSgs~Dg-----------~V~IWd~~t~~~--i~~l~~H~~~--V~~vafsp~~~~LaSg-s~--D-g~ 620 (743)
.+.|.++++.|+....|. .|+.|.+.+... ...+++.... ...+..++++++|+.. .. + ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 399999988766655433 378888876432 3455554333 5678889999987543 33 3 45
Q ss_pred EEEEECCCC---CeeEEEEecCCCCe-EEEEEecCCCcEEEEEe---CCCcEEEEECCCCee---eEEEecc-C---cee
Q 004603 621 VRVWDTENP---DYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSC---AGVFKVC-N---LMP 686 (743)
Q Consensus 621 VrvWDl~~~---~~~l~~l~~h~~~V-~sl~fsp~g~~lL~Sgs---~Dg~IrvWDl~tg~~---v~~~~~~-~---~i~ 686 (743)
|.+.|+... ......+......+ ..+... . ..+++... .++.|...++..... ...+..+ . ...
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~ 331 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED 331 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred EEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence 788888764 22244444444444 444444 3 33443332 235677778876652 2233222 1 123
Q ss_pred eecCCCEEEEE-ecCCe--EEEEecc
Q 004603 687 IILKGCFILNS-IFNCY--LLLHRIF 709 (743)
Q Consensus 687 ~s~~g~~l~sg-s~Dg~--I~vh~~~ 709 (743)
+...+.+|+.. ..++. |.+++..
T Consensus 332 ~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 332 VSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEECCEEEEEEEECCccEEEEEECC
Confidence 44555555544 44443 4445555
No 459
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=72.15 E-value=76 Score=35.03 Aligned_cols=111 Identities=10% Similarity=0.046 Sum_probs=63.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEccc--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CC
Q 004603 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT 642 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H--~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~-~~ 642 (743)
++ .++.+..||.|.-.|.+++..+-....- ...+.+-.+..+|+ |+.++.++.++++|.+++.. +..+.... -.
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Confidence 44 4555577888888888887755322111 11222222222554 77788899999999987765 45444333 11
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec
Q 004603 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 643 V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
+..-..-.++ .+..++.|+.+...|..+|+.+..+..
T Consensus 145 ~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 145 YASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred EecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEec
Confidence 1222222232 233444678888888888887666443
No 460
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=71.04 E-value=1.6e+02 Score=31.93 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=59.4
Q ss_pred EEEEeCCCeEEEEECCCCCeeEEEEe--cCCCCeEEEEEecC-----CCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc
Q 004603 612 LATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPS-----KEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL 684 (743)
Q Consensus 612 LaSgs~Dg~VrvWDl~~~~~~l~~l~--~h~~~V~sl~fsp~-----g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~ 684 (743)
=+.|-.-|.|-+||+.- .. ++.+. +.-...+.|+..|. ...+|+.--.||+|.+||..+++.+..+.....
T Consensus 215 ~v~G~G~G~VdvFd~~G-~l-~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 215 EVAGAGLGYVNVFTLNG-QL-LRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred cccCCCcceEEEEcCCC-cE-EEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 34445567999999873 33 55453 33455677887663 234777777799999999999999988888776
Q ss_pred eeeecCCCEEEEEe
Q 004603 685 MPIILKGCFILNSI 698 (743)
Q Consensus 685 i~~s~~g~~l~sgs 698 (743)
..+..+|-|-++-+
T Consensus 293 ~pi~i~GLWgL~fG 306 (336)
T TIGR03118 293 HPVKVDGLWSLTFG 306 (336)
T ss_pred CeEEecCeEEeeeC
Confidence 66777776654443
No 461
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=70.87 E-value=12 Score=44.72 Aligned_cols=122 Identities=9% Similarity=0.152 Sum_probs=71.4
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCCcccccccc-CCCceeeeEEEeeCCCCCeEEEEEc--CCCCEEEEEeCCCcEE
Q 004603 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV-GKGFTFTEFQLIPASTSKVESCHFS--PDGKLLATGGHDKKAV 580 (743)
Q Consensus 504 ~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~H~~~V~siafs--pdg~~LaSgs~Dg~V~ 580 (743)
+...+|+.+..||.|.+|....-...-.....-.+. ......++...++.. ..++.++++ ...++||+++....|.
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~-~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG-ASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC-CceeEEEEEecCcceEEEEecCCceEE
Confidence 345788999999999999442110000000000000 000112233333333 368999998 7888999999888888
Q ss_pred EEECCCC--eE-EEEEcccCCCEEEEEEcCCC---C---EEEEEeCCCeEEEEEC
Q 004603 581 LWCTESF--TV-KSTLEEHTQWITDVRFSPSL---S---RLATSSADRTVRVWDT 626 (743)
Q Consensus 581 IWd~~t~--~~-i~~l~~H~~~V~~vafsp~~---~---~LaSgs~Dg~VrvWDl 626 (743)
||-.... +. ...-..|...|-+|+|-++. . .|++++-.|.|.+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8755331 11 11111356679999997742 2 6778888999998887
No 462
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=70.58 E-value=1.8e+02 Score=33.63 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=60.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCC---CEEEEEEcCCCCEEEEEeC-------------CCeEEEE
Q 004603 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA-------------DRTVRVW 624 (743)
Q Consensus 561 iafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~---~V~~vafsp~~~~LaSgs~-------------Dg~VrvW 624 (743)
+.+.++|.+++..+ ..++.+|+. |+.+..+.-... .-.++.+.|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55667888776655 678888875 555444332111 1234566788888776661 1113333
Q ss_pred ECCCCCeeEEEEe--cC-----------------------C--CCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE
Q 004603 625 DTENPDYSLRTFT--GH-----------------------S--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (743)
Q Consensus 625 Dl~~~~~~l~~l~--~h-----------------------~--~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~ 677 (743)
| .+++. +..+. .| . -.++++.+.+.+..+++|+-.-..|...|.++++...
T Consensus 230 d-~tG~v-v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 230 D-PTGEV-VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp --TTS-E-EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred C-CCCCE-EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 3 33221 21111 00 0 2488999999767788777766689999999998887
Q ss_pred EEecc
Q 004603 678 VFKVC 682 (743)
Q Consensus 678 ~~~~~ 682 (743)
.+..+
T Consensus 308 ilg~~ 312 (477)
T PF05935_consen 308 ILGPP 312 (477)
T ss_dssp EES-S
T ss_pred EeCCC
Confidence 77654
No 463
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=70.46 E-value=2e+02 Score=36.59 Aligned_cols=178 Identities=15% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCc------------------EEEEECCCCeEEEEEc----ccCCCEEEEEEcCCCC--
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKK------------------AVLWCTESFTVKSTLE----EHTQWITDVRFSPSLS-- 610 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~------------------V~IWd~~t~~~i~~l~----~H~~~V~~vafsp~~~-- 610 (743)
+..|+++..+-.-++..++.+++. |.+....+++.+..++ +|...+..+...-.+.
T Consensus 964 e~~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~ 1043 (1366)
T KOG1896|consen 964 EKKVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTK 1043 (1366)
T ss_pred cceEEEEEEeccceeeecccccccccccccccccccccccceeEEecCCccccccccccCccceeeEEEEEEEEeccccc
Q ss_pred ----EEEEEeC---------CCeEEEEEC-----------CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603 611 ----RLATSSA---------DRTVRVWDT-----------ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 611 ----~LaSgs~---------Dg~VrvWDl-----------~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir 666 (743)
+|+.|.. -|.++++|+ ...+......+.-.+.|..+|=... .|++|. .-.|.
T Consensus 1044 ~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G---~l~~~~-GqKI~ 1119 (1366)
T KOG1896|consen 1044 GKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRG---HLLSSQ-GQKII 1119 (1366)
T ss_pred CCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEecc---EEEEcc-CcEEE
Q ss_pred EEEC-CCCeeeEEEeccCceeee---cCCCEEEEEecCCeEEE-----------------EecccceEEEEecCCCCEEE
Q 004603 667 YWSI-NNGSCAGVFKVCNLMPII---LKGCFILNSIFNCYLLL-----------------HRIFLNLLSVSEWCNPDEIS 725 (743)
Q Consensus 667 vWDl-~tg~~v~~~~~~~~i~~s---~~g~~l~sgs~Dg~I~v-----------------h~~~v~~l~v~~~~~~~~la 725 (743)
||++ +....+..-.....+-++ .-+++|+.|.--..|.+ -...+..+.+-.+...-.++
T Consensus 1120 v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~fl 1199 (1366)
T KOG1896|consen 1120 VRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFL 1199 (1366)
T ss_pred EEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEE
Q ss_pred EEeCCCeEEEe
Q 004603 726 TSSWKDSCCSH 736 (743)
Q Consensus 726 Sgs~DG~V~iW 736 (743)
++..|+.|+++
T Consensus 1200 vsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1200 VSDADRNIHVY 1210 (1366)
T ss_pred EEcCCCcEEEE
No 464
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.07 E-value=1.9e+02 Score=32.54 Aligned_cols=112 Identities=10% Similarity=0.119 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe----eE
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SL 633 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~----~l 633 (743)
...+..++++.+++.+..-..++-||--...-...-......++.+.|.+++..++++ .+|.|.+ ....+.. .+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence 5566777888877777644333445432110011122234568899999988877766 4565443 3322221 12
Q ss_pred EEEec--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603 634 RTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 634 ~~l~~--h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~ 674 (743)
..... -...+.++.|.+++. ++ .++.+|.|.+. ...|+
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRS-TDGGK 358 (398)
T ss_pred eecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEe-CCCCc
Confidence 22221 123488999998765 55 45557765554 34444
No 465
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=68.70 E-value=3.1e+02 Score=34.27 Aligned_cols=110 Identities=11% Similarity=0.050 Sum_probs=71.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeE
Q 004603 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSL 633 (743)
Q Consensus 556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~--~~l 633 (743)
+.|.++..- +|++||.= .-.|++|+..+.+.++.-..|...+..+...-.++.++.|..-+.|.+.-.+..+ ...
T Consensus 830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 345444332 56666543 5689999999887777777788889999888889999999988877766554333 211
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004603 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl 670 (743)
..-..+..+.+++.+-.+.. ++ .+..+|.+.+--.
T Consensus 907 vArD~~p~Wmtaveil~~d~-yl-gae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDT-YL-GAENSGNLFTVRK 941 (1096)
T ss_pred eehhhCccceeeEEEecCce-EE-eecccccEEEEEe
Confidence 22223556777777765533 33 4555666665533
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=68.61 E-value=18 Score=25.78 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=23.1
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCC--CcEEEE
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYW 668 (743)
Q Consensus 638 ~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvW 668 (743)
.....-....|+|||+.+++++..+ |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445677889999999998888888 777666
No 467
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=67.46 E-value=1.1e+02 Score=38.11 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=50.1
Q ss_pred EEEEECCCCeEEEEEccc----CCCEEEEEEcCCCC--EEEEEe-----------CCCeEEEEECCCCCeeEEEEecCCC
Q 004603 579 AVLWCTESFTVKSTLEEH----TQWITDVRFSPSLS--RLATSS-----------ADRTVRVWDTENPDYSLRTFTGHST 641 (743)
Q Consensus 579 V~IWd~~t~~~i~~l~~H----~~~V~~vafsp~~~--~LaSgs-----------~Dg~VrvWDl~~~~~~l~~l~~h~~ 641 (743)
|++.|..+++.+..+... .-.|.++.|+.... +++.|+ .+|.++.|++-.....+..+....-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 666666666555444321 12355556654322 233332 2455777765443332333322111
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEE
Q 004603 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (743)
Q Consensus 642 ~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~ 678 (743)
.-.-.+.+|-...+|+.. ...+++||+...+.++.
T Consensus 935 ~~~v~Ai~~f~~~~Lagv--G~~l~~YdlG~K~lLRk 969 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAGV--GRFLRLYDLGKKKLLRK 969 (1205)
T ss_pred CccceEEeccCCEEEEec--ccEEEEeeCChHHHHhh
Confidence 222245567666666444 46899999987765443
No 468
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=67.20 E-value=33 Score=42.15 Aligned_cols=93 Identities=11% Similarity=0.050 Sum_probs=60.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEE-EeCCC-----eEEEEECCCCCeeEEEEecCCC
Q 004603 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR-----TVRVWDTENPDYSLRTFTGHST 641 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaS-gs~Dg-----~VrvWDl~~~~~~l~~l~~h~~ 641 (743)
++.+..-..+.+.+-|.+.......-..+...|.+-+|+|||+.|+- .+..+ .|.+-|+++...-+..+.-...
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 33333333347888888765555441456888999999999999876 44444 4888898875543445554566
Q ss_pred CeEEEEEecCCCcEEEEEe
Q 004603 642 TVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 642 ~V~sl~fsp~g~~lL~Sgs 660 (743)
.|..-....+|...++-.+
T Consensus 400 aiprwrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 400 AIPRWRVLENGDTVIVYVS 418 (912)
T ss_pred cccceEecCCCCeEEEEEc
Confidence 6776677777776665443
No 469
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=67.12 E-value=1e+02 Score=33.47 Aligned_cols=51 Identities=8% Similarity=-0.033 Sum_probs=35.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe
Q 004603 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (743)
Q Consensus 562 afspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs 616 (743)
.|+ +|++.++=+..|.|..+|.++++...... -.+....++|. |.++++|-
T Consensus 209 RWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 209 RWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred cEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEEe
Confidence 344 78888888889999999987765443322 23456778887 77776653
No 470
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=67.09 E-value=44 Score=34.96 Aligned_cols=126 Identities=11% Similarity=0.157 Sum_probs=68.1
Q ss_pred EEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-C--CeEEEEECCC-CCeeEE-EEe---cCCCCeEEEEEec
Q 004603 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D--RTVRVWDTEN-PDYSLR-TFT---GHSTTVMSLDFHP 650 (743)
Q Consensus 579 V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-D--g~VrvWDl~~-~~~~l~-~l~---~h~~~V~sl~fsp 650 (743)
-.+||+.+.+....-......+..-.|-++|++|.+|+. | ..||+++... ...|-. ... ....+--++.--|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 347888775543222222334444567889999999876 3 4588888654 111111 110 1122334455667
Q ss_pred CCCcEEEEEeCCCcEEEEECCCC--eeeEE--Eec---------cCceeeecCCCEEEEEecCCeEE
Q 004603 651 SKEDLLCSCDNNSEIRYWSINNG--SCAGV--FKV---------CNLMPIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 651 ~g~~lL~Sgs~Dg~IrvWDl~tg--~~v~~--~~~---------~~~i~~s~~g~~l~sgs~Dg~I~ 704 (743)
||+.+++.|...-+..+|.-+.. ..... +.. ...+.+.|+|+.++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 88866666665556667765321 11111 110 11245668999888887765444
No 471
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=66.28 E-value=26 Score=25.06 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=22.9
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCeEEEEEcc
Q 004603 565 PDGKLLATGG-HDKKAVLWCTESFTVKSTLEE 595 (743)
Q Consensus 565 pdg~~LaSgs-~Dg~V~IWd~~t~~~i~~l~~ 595 (743)
|++++|+++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666554 578999999988887776654
No 472
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=66.11 E-value=1.9e+02 Score=31.04 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=34.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEE--EEcccCCCEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCC
Q 004603 566 DGKLLATGGHD-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPD 630 (743)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp~~~~LaSgs~Dg----~VrvWDl~~~~ 630 (743)
++++.+.|+.+ ..+.+||+.+.+-.. .+... ......+..-++.+++.|+.++ .+.+||+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 56677777642 357788877644322 12111 1111222222456777777654 35688888754
No 473
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=65.79 E-value=3e+02 Score=33.10 Aligned_cols=125 Identities=16% Similarity=0.149 Sum_probs=68.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEc-ccCC------CEEEEEEcCCCCEEEEEeC-C---CeE
Q 004603 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLE-EHTQ------WITDVRFSPSLSRLATSSA-D---RTV 621 (743)
Q Consensus 555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~--~i~~l~-~H~~------~V~~vafsp~~~~LaSgs~-D---g~V 621 (743)
.++|..|.|.++++.+++.-..|.|.+||..... .+..+. .+.. .|..........++++-+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5679999999999999999999999999993221 111111 1222 2222221112334443333 2 346
Q ss_pred EEEECCCCCeeEEEEe---cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec
Q 004603 622 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 622 rvWDl~~~~~~l~~l~---~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
|++.+......+..+. -+........|+-....++.- .+++|.+|++..-+...++..
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence 7888722222222222 122223333333332334422 578999999988877666654
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=64.25 E-value=66 Score=34.47 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=60.3
Q ss_pred CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCCeeEEEEec-----CCCCeEE
Q 004603 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG-----HSTTVMS 645 (743)
Q Consensus 577 g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs------~Dg~VrvWDl~~~~~~l~~l~~-----h~~~V~s 645 (743)
..|++||..+.+....-.+-.+.|+++.|..+..+++.|. ....+..||+.+.. ...+.+ -.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCCCcEEE
Confidence 3589999887666554445567899999986666667664 35578899988754 334443 2367888
Q ss_pred EEEecC-CCcEEEEEe-CC--CcEEEEECCC
Q 004603 646 LDFHPS-KEDLLCSCD-NN--SEIRYWSINN 672 (743)
Q Consensus 646 l~fsp~-g~~lL~Sgs-~D--g~IrvWDl~t 672 (743)
+.+... +..++++|. .+ ..|..||-.+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 877543 334554443 22 3477776543
No 475
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=63.42 E-value=1.6e+02 Score=31.75 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCE-----EEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-----TDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V-----~~vafsp~~~~LaSgs~Dg~VrvWDl~ 627 (743)
|++|....+|.+|+|+-.-.+|.+.|-.+++.+-.+.+....= ...+|=.+-+++-.+..+++|.|+|=.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 7788888899999999988999999999999998887652211 112332344445455678999999863
No 476
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=62.78 E-value=2e+02 Score=30.05 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=66.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEEE-EEc--ccCCCEEEEEEcCCCCEEEEEe---CCCeEEEEECCCC
Q 004603 557 KVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVKS-TLE--EHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENP 629 (743)
Q Consensus 557 ~V~siafspdg~~LaSgs~Dg~V~IWd-~~t~~~i~-~l~--~H~~~V~~vafsp~~~~LaSgs---~Dg~VrvWDl~~~ 629 (743)
.+..-.|++++...+....+..++++. ..++.... .+. .-...|+.++++|||.+++... .++.|.+--+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 477778999988777777677777763 23332221 111 1112899999999999876555 3577776655321
Q ss_pred Ce--------eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 004603 630 DY--------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (743)
Q Consensus 630 ~~--------~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Irv 667 (743)
.. ++.........+.+++|.+++..+++....++.+..
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 11 122222334678999999998755544444443433
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.68 E-value=26 Score=44.27 Aligned_cols=93 Identities=13% Similarity=0.242 Sum_probs=50.1
Q ss_pred eCCCcEEEEECCCCeEEEEEcccCCCEEEEEE-cC-------CCCEEEEEeCCCeEEEEECCCCC--eeEEEEec-----
Q 004603 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVWDTENPD--YSLRTFTG----- 638 (743)
Q Consensus 574 s~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vaf-sp-------~~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~----- 638 (743)
+-|+.+.+|+.+++.....+.+-+..|..|.. .| .=.++..-..-..|.++-+.-.. .....+..
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 34889999999987777777776666766654 22 21233222233444444332111 10112221
Q ss_pred -CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004603 639 -HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 639 -h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl 670 (743)
....|.++....+|+ +|++| .|| .+|.+
T Consensus 176 ~dg~~V~~I~~t~nGR-IF~~G-~dg--~lyEl 204 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR-IFFAG-RDG--NLYEL 204 (1311)
T ss_pred cCCceEEEEEeccCCc-EEEee-cCC--CEEEE
Confidence 234578888666766 55444 466 45544
No 478
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.26 E-value=1e+02 Score=31.60 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=56.7
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeEEEEecCCCC
Q 004603 566 DGKLLATGGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTT 642 (743)
Q Consensus 566 dg~~LaSgs~D--g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~~~l~~l~~h~~~ 642 (743)
+|.++.+.+.- ..|++||+++++.+..-.-....+..--...-++++..-. .+|.-.++|.++-++ +..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~-lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE-LGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh-hcccc-cCCc
Confidence 45566666543 4699999998887655432211222111111134443333 488888999887543 44443 3344
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 643 V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~ 674 (743)
-+.++. ++..++.+ +...++++-|..+-.
T Consensus 133 GWgLt~--d~~~Lims-dGsatL~frdP~tfa 161 (262)
T COG3823 133 GWGLTS--DDKNLIMS-DGSATLQFRDPKTFA 161 (262)
T ss_pred ceeeec--CCcceEee-CCceEEEecCHHHhh
Confidence 566654 44555544 334577777766543
No 479
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=61.21 E-value=95 Score=37.50 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=13.9
Q ss_pred EEEEcCCCCEEEEEeCCC
Q 004603 602 DVRFSPSLSRLATSSADR 619 (743)
Q Consensus 602 ~vafsp~~~~LaSgs~Dg 619 (743)
-+.|-|.|..++|-+.||
T Consensus 251 ~LSWkpqgS~~ati~td~ 268 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDG 268 (1243)
T ss_pred ccccccCCceeeeeccCC
Confidence 478889888888877554
No 480
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=60.12 E-value=8.2 Score=39.64 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcCCCCCC
Q 004603 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (743)
Q Consensus 11 ~l~~yiy~yl~k~~~~~~A~~~~~e~~~~~~ 41 (743)
-+|.-|-|||+..||.++|+.|.+|.++...
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~ 58 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAKESGIKPP 58 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhccccCCCCc
Confidence 4899999999999999999999999987653
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=59.65 E-value=2.2e+02 Score=32.66 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=38.3
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEE----e-cCCCCeEEEEEecCC
Q 004603 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF----T-GHSTTVMSLDFHPSK 652 (743)
Q Consensus 596 H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~-~l~~l----~-~h~~~V~sl~fsp~g 652 (743)
.-..-+.|+|.|++++|++--..|.|++++..+... .+..+ . .-......|+|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344568999999998777765579999998654332 11111 1 125668999999873
No 482
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.08 E-value=97 Score=39.46 Aligned_cols=72 Identities=8% Similarity=0.204 Sum_probs=47.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEC----CC-------CCee------------EEEEe-cCCCCeEEEEEecCC
Q 004603 597 TQWITDVRFSPSLSRLATSSADRTVRVWDT----EN-------PDYS------------LRTFT-GHSTTVMSLDFHPSK 652 (743)
Q Consensus 597 ~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl----~~-------~~~~------------l~~l~-~h~~~V~sl~fsp~g 652 (743)
...|.|+....+|+.|++| .|| .+|.+ .. .+.| +-.+. .+.++|..+.....
T Consensus 178 g~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S- 253 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS- 253 (1311)
T ss_pred CceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc-
Confidence 4568888866677776665 566 55543 11 1111 11122 46678988988765
Q ss_pred CcEEEEEeCCCcEEEEECCC
Q 004603 653 EDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 653 ~~lL~Sgs~Dg~IrvWDl~t 672 (743)
+.++.+=++.++|++||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 55888888899999999986
No 483
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=58.99 E-value=2.9e+02 Score=30.60 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=14.6
Q ss_pred CCCEEEEEeCCC-----------cEEEEECCCCe
Q 004603 566 DGKLLATGGHDK-----------KAVLWCTESFT 588 (743)
Q Consensus 566 dg~~LaSgs~Dg-----------~V~IWd~~t~~ 588 (743)
++.+++.|+.+. .+..||+.+..
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 566777776542 46678876644
No 484
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=58.73 E-value=1.8e+02 Score=31.64 Aligned_cols=98 Identities=14% Similarity=0.217 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEEEEc---------------ccCCCEEEEEEcCCCCEEEEEe
Q 004603 558 VESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLE---------------EHTQWITDVRFSPSLSRLATSS 616 (743)
Q Consensus 558 V~siafspdg~~LaSgs~D------g~V~IWd~~t~~~i~~l~---------------~H~~~V~~vafsp~~~~LaSgs 616 (743)
..+|++.++|.++++.-.+ ..|+.++.+ +..+..+. ........++++|++..|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 5578887788888887767 778888866 55544431 1234688999999999766654
Q ss_pred C-----CC--e-------EEEE--ECCCCCeeEEE--E--ec-----CCCCeEEEEEecCCCcEE
Q 004603 617 A-----DR--T-------VRVW--DTENPDYSLRT--F--TG-----HSTTVMSLDFHPSKEDLL 656 (743)
Q Consensus 617 ~-----Dg--~-------VrvW--Dl~~~~~~l~~--l--~~-----h~~~V~sl~fsp~g~~lL 656 (743)
. |+ . +|++ |..+...+... + .. ....|..+.+.+++..++
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 3 32 1 4555 44432211222 2 11 346688999999987444
No 485
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.26 E-value=8.1 Score=42.11 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHhcCCCCC
Q 004603 8 ADKMLDVYIYDYLLKRKLHASAKAFQTEGKVST 40 (743)
Q Consensus 8 ~~~~l~~yiy~yl~k~~~~~~A~~~~~e~~~~~ 40 (743)
.++.||.+|-|||+++||+++|.-|.++..+..
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~led 146 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLED 146 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhh
Confidence 367899999999999999999999999876643
No 486
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=58.17 E-value=38 Score=29.48 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=35.0
Q ss_pred CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 619 g~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t 672 (743)
+.|-.||..+ +..... --...+.|.++|+++.++++....+.|++|....
T Consensus 36 ~~Vvyyd~~~---~~~va~-g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKE---VKVVAS-GFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCE---eEEeec-cCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4556666432 122222 2345688999999999999999999999998653
No 487
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=57.59 E-value=54 Score=34.32 Aligned_cols=116 Identities=16% Similarity=0.315 Sum_probs=63.0
Q ss_pred EEcCCCCEEEEEeC-C--CcEEEEECCC----CeEEE---EEcccCCCEEEEEEcCCCCEEEEEeCCC-eEEEEECCCC-
Q 004603 562 HFSPDGKLLATGGH-D--KKAVLWCTES----FTVKS---TLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENP- 629 (743)
Q Consensus 562 afspdg~~LaSgs~-D--g~V~IWd~~t----~~~i~---~l~~H~~~V~~vafsp~~~~LaSgs~Dg-~VrvWDl~~~- 629 (743)
.|-+||++|.+|+. | +.|++++... ..... .+. ...+--.+..-|||+.|+.|+.+. +.-+|.-+..
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 45679999999875 2 4588887543 11111 011 122222334456899988888764 3445554221
Q ss_pred CeeEE--EEec-----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec
Q 004603 630 DYSLR--TFTG-----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 630 ~~~l~--~l~~-----h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
..... .+.. ....--.+...|+|+ +|+.+..+ -.|||..+.+.++.+..
T Consensus 152 ~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~~--s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANRG--SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred CCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcCC--cEEEeCCCCeEEeeCCC
Confidence 11111 1110 111122456678887 66566544 56789998877766654
No 488
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=54.51 E-value=2.1e+02 Score=30.76 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=39.6
Q ss_pred CCCEEEEEeCCCcEEEEECCC--CeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 004603 566 DGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE 627 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t--~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~ 627 (743)
++++|+.|.++| +.+.+++. .+....+ +...|+++...+.-+.|++-+ ....++++|+.
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 336899999988 45555554 3344333 467899999988766665544 34449999983
No 489
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=54.23 E-value=3.8e+02 Score=30.51 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=38.6
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~ 584 (743)
.+++.=+.||.+.+|.- ........+.+ .--.-.++|++....|++++.+.+|..|..
T Consensus 146 ~~IcVQS~DG~L~~feq-------------------e~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQ-------------------ESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeC-------------------CcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 78888899999999922 22222222222 222346778888888999988888888864
No 490
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=53.99 E-value=5e+02 Score=31.95 Aligned_cols=184 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCC---CcEEEE-
Q 004603 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHD---KKAVLW- 582 (743)
Q Consensus 509 l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp--dg~~LaSgs~D---g~V~IW- 582 (743)
+.+....|.+++|....+. ........+...+..-.+.|+..++.+ +|..++.++.+ +.|++|
T Consensus 65 ~i~Vt~nG~l~l~yQ~~~~-----------~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yr 133 (753)
T PF11635_consen 65 CIAVTRNGLLKLWYQKPDG-----------QWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYR 133 (753)
T ss_pred EEEEecCCeEEEEEEcCCC-----------ccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEE
Q ss_pred ------------EC---CCCeEEEEEcc-----------------cCCCEEEEEEcC-------CCCEEEEEeCCC----
Q 004603 583 ------------CT---ESFTVKSTLEE-----------------HTQWITDVRFSP-------SLSRLATSSADR---- 619 (743)
Q Consensus 583 ------------d~---~t~~~i~~l~~-----------------H~~~V~~vafsp-------~~~~LaSgs~Dg---- 619 (743)
|- .+......... .-..++.+.|-+ ....|++.+...
T Consensus 134 v~I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~S 213 (753)
T PF11635_consen 134 VQIDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSS 213 (753)
T ss_pred EEEeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCc
Q ss_pred eEEEEECCCCCeeEEEEe-------------------------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603 620 TVRVWDTENPDYSLRTFT-------------------------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 620 ~VrvWDl~~~~~~l~~l~-------------------------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~ 674 (743)
.|.-|.++.....++..- .....|.+++...-+. +++..-.||+|.++|..+.+
T Consensus 214 iI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~ 292 (753)
T PF11635_consen 214 IIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMK 292 (753)
T ss_pred EEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCc-EEEEEEcCCeEEEEecCcch
Q ss_pred eeEEE----eccCc-------------------eeeecCCCEEEEEecCCeEE
Q 004603 675 CAGVF----KVCNL-------------------MPIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 675 ~v~~~----~~~~~-------------------i~~s~~g~~l~sgs~Dg~I~ 704 (743)
.+... ...+. ++|+|.++-++.-..++.+.
T Consensus 293 ~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 293 ELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred hhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
No 491
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=53.88 E-value=1.4e+02 Score=32.66 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=37.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEE----ecCCCCeEEEEEecC---CCcEEEEEe
Q 004603 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF----TGHSTTVMSLDFHPS---KEDLLCSCD 660 (743)
Q Consensus 599 ~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~--~l~~l----~~h~~~V~sl~fsp~---g~~lL~Sgs 660 (743)
..+.|+|.|++++|++ ...|.|++++ ..+.. .+..+ .........++|+|+ ..+++++.+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 3578999999877665 5699999999 33332 22222 123456799999994 334554444
No 492
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=53.75 E-value=2.2 Score=48.04 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=70.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE-E
Q 004603 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V 678 (743)
Q Consensus 600 V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~-~ 678 (743)
....+|-|.+.-++.++.+..|..||-.... .... ...+....++|+-+++.+++.+-..+.+.+||+.+...-. .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~--~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV--ILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce--eccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 3455678876668888889999999955322 1122 2345566788988888888888888999999998542110 1
Q ss_pred Eecc---CceeeecCCCEEEEEecCCeEEEEecc
Q 004603 679 FKVC---NLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 679 ~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh~~~ 709 (743)
+.+. .-..+++.+..++.|...+.+.+....
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhg 147 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHG 147 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEecc
Confidence 1111 114466777777777777777774433
No 493
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=53.59 E-value=4.3e+02 Score=32.57 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=27.1
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..+.+..+.+|. |.+|+.+.+-.++.| .+|.|.-|-+..
T Consensus 219 iPkrV~gL~gh~--~~qisvs~~HslvLT--~~g~Vys~GlN~ 257 (1267)
T KOG0783|consen 219 IPKRVPGLIGHK--VIQISVSHTHSLVLT--KFGSVYSWGLNG 257 (1267)
T ss_pred cccccccccccc--eEEEEeecceeEEEe--ecceEEEeecCc
Confidence 334455566775 888988877665555 588899997754
No 494
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=53.55 E-value=8.1 Score=47.64 Aligned_cols=11 Identities=36% Similarity=0.202 Sum_probs=5.6
Q ss_pred CCCCCCCcccc
Q 004603 159 LPFQRDSLDDA 169 (743)
Q Consensus 159 ~~~~~~~~~~~ 169 (743)
+-++|.++..+
T Consensus 1917 ~~~~~q~~g~~ 1927 (2131)
T KOG4369|consen 1917 LYNQMQSLGQD 1927 (2131)
T ss_pred ccccccccccc
Confidence 34556655444
No 495
>PLN02153 epithiospecifier protein
Probab=53.09 E-value=2.3e+02 Score=30.77 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=33.6
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEE--EEcc---cCCCEEEEEEcCCCCEEEEEeCC-----------CeEEEE
Q 004603 566 DGKLLATGGHD-----KKAVLWCTESFTVKS--TLEE---HTQWITDVRFSPSLSRLATSSAD-----------RTVRVW 624 (743)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWd~~t~~~i~--~l~~---H~~~V~~vafsp~~~~LaSgs~D-----------g~VrvW 624 (743)
++++++.|+.+ ..|.+||+.+.+-.. .+.. ........+..-++.+++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56677777753 357788887644322 1110 11111212222245566777653 247788
Q ss_pred ECCCCC
Q 004603 625 DTENPD 630 (743)
Q Consensus 625 Dl~~~~ 630 (743)
|+.+..
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 987654
No 496
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=52.86 E-value=1e+02 Score=27.05 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=0.0
Q ss_pred EEEEEcCC-CCEEEEEeC-----------------CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603 601 TDVRFSPS-LSRLATSSA-----------------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 601 ~~vafsp~-~~~LaSgs~-----------------Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D 662 (743)
.++++.++ |...+|-+. +|.+..||..+++ +.++..--...+.|++++++..+|++=..-
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~--~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE--TTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE--EEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe--EEEehhCCCccCeEEEcCCCCEEEEEeccC
Q ss_pred CcEEEEECC
Q 004603 663 SEIRYWSIN 671 (743)
Q Consensus 663 g~IrvWDl~ 671 (743)
..|.-|-+.
T Consensus 79 ~Ri~rywl~ 87 (89)
T PF03088_consen 79 YRILRYWLK 87 (89)
T ss_dssp TEEEEEESS
T ss_pred ceEEEEEEe
No 497
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=52.57 E-value=3.4e+02 Score=29.45 Aligned_cols=178 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCEEEEeeCC-----------CcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEe
Q 004603 506 DRFVDDGSLD-----------DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (743)
Q Consensus 506 ~~~l~sGs~D-----------~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs 574 (743)
+.+.+.|+.+ ..+..|+. ....++.+.........-.+.+..-++++.+.|+
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~-----------------~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDP-----------------KKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEEC-----------------CCCEEecCCCCCCCcccceeEEEEeCCEEEEEcC
Q ss_pred CC---------------------------------------CcEEEEECCCCeEEEEEcccC-CCEEEEEEcCCCCEEEE
Q 004603 575 HD---------------------------------------KKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLAT 614 (743)
Q Consensus 575 ~D---------------------------------------g~V~IWd~~t~~~i~~l~~H~-~~V~~vafsp~~~~LaS 614 (743)
.+ +.|.+||..+.+-...-.-.. ....+....-++++++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~ 206 (346)
T TIGR03547 127 VNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLI 206 (346)
T ss_pred cChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEE
Q ss_pred EeCC------CeEEEEECCCCCeeEEEEecCCCC--------eEEEEEecCCCcEEEEEeCC------------------
Q 004603 615 SSAD------RTVRVWDTENPDYSLRTFTGHSTT--------VMSLDFHPSKEDLLCSCDNN------------------ 662 (743)
Q Consensus 615 gs~D------g~VrvWDl~~~~~~l~~l~~h~~~--------V~sl~fsp~g~~lL~Sgs~D------------------ 662 (743)
|+.+ ..+.++|+......-..+...... ....+...++. |++.|+.+
T Consensus 207 GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~~ 285 (346)
T TIGR03547 207 NGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGV-LLVAGGANFPGAQENYKNGKLYAHEG 285 (346)
T ss_pred eeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCE-EEEeecCCCCCchhhhhcCCccccCC
Q ss_pred ----CcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCC
Q 004603 663 ----SEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNC 701 (743)
Q Consensus 663 ----g~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg 701 (743)
..+.+||..+.+....-..... ..+..++..++.|+.+.
T Consensus 286 ~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 286 LIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred CCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
No 498
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=50.59 E-value=1.7e+02 Score=32.53 Aligned_cols=136 Identities=13% Similarity=0.063 Sum_probs=0.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEC--CCCeEEEE---EcccC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004603 560 SCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKST---LEEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 560 siafspdg~~LaSgs~Dg~V~IWd~--~t~~~i~~---l~~H~---~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~ 631 (743)
++..+.+.-++.+|..+|-|..-+. .+...... ...+. ++-..++|...+.-|+.| |...=+|.+.-...
T Consensus 69 ~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~Va--DAYlGL~~V~p~g~ 146 (376)
T KOG1520|consen 69 YTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVA--DAYLGLLKVGPEGG 146 (376)
T ss_pred eEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEE--ecceeeEEECCCCC
Q ss_pred eEEEEecCCCC-----eEEEEEecCCCcEE----------------EEEeCCCcEEEEECCCCe---eeEEEeccCceee
Q 004603 632 SLRTFTGHSTT-----VMSLDFHPSKEDLL----------------CSCDNNSEIRYWSINNGS---CAGVFKVCNLMPI 687 (743)
Q Consensus 632 ~l~~l~~h~~~-----V~sl~fsp~g~~lL----------------~Sgs~Dg~IrvWDl~tg~---~v~~~~~~~~i~~ 687 (743)
....+..+... ..+++.+++|..++ .++..+|.+--||..+.. .+..+...+.+++
T Consensus 147 ~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaL 226 (376)
T KOG1520|consen 147 LAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLAL 226 (376)
T ss_pred cceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccC
Q ss_pred ecCCCEEEEE
Q 004603 688 ILKGCFILNS 697 (743)
Q Consensus 688 s~~g~~l~sg 697 (743)
++++.+++.+
T Consensus 227 S~d~sfvl~~ 236 (376)
T KOG1520|consen 227 SPDGSFVLVA 236 (376)
T ss_pred CCCCCEEEEE
No 499
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=50.51 E-value=3.1e+02 Score=29.99 Aligned_cols=133 Identities=8% Similarity=0.067 Sum_probs=0.0
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEE--ECCCCeEEEEEcccCCCEEEEEE--cC---CCCEEEEEeCCCeEEEEECCCC
Q 004603 558 VESCHFSP-DGKLLATGGHDKKAVLW--CTESFTVKSTLEEHTQWITDVRF--SP---SLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 558 V~siafsp-dg~~LaSgs~Dg~V~IW--d~~t~~~i~~l~~H~~~V~~vaf--sp---~~~~LaSgs~Dg~VrvWDl~~~ 629 (743)
.+.+++.. .-+++-+.+...+..-| +...+-++..+....--+..+.| +| ++++.++-+..|.|..+|.+++
T Consensus 154 LNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWhdgrLwvldsgtGev~~vD~~~G 233 (335)
T TIGR03032 154 LNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWYQGKLWLLNSGRGELGYVDPQAG 233 (335)
T ss_pred ecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEeCCeEEEEECCCCEEEEEcCCCC
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC-------------------cEEEEECCCCeeeEEEeccCceeeecC
Q 004603 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------------EIRYWSINNGSCAGVFKVCNLMPIILK 690 (743)
Q Consensus 630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg-------------------~IrvWDl~tg~~v~~~~~~~~i~~s~~ 690 (743)
. ......-.+....++|. |..++++-|.-. -|.|.|+++|..++.++....+.-.-|
T Consensus 234 ~--~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~Eifd 309 (335)
T TIGR03032 234 K--FQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYD 309 (335)
T ss_pred c--EEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEE
Q ss_pred CCEE
Q 004603 691 GCFI 694 (743)
Q Consensus 691 g~~l 694 (743)
-..|
T Consensus 310 V~vL 313 (335)
T TIGR03032 310 VAVL 313 (335)
T ss_pred EEEe
No 500
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=50.08 E-value=3.7e+02 Score=29.15 Aligned_cols=211 Identities=12% Similarity=0.017 Sum_probs=0.0
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee-CCCCCeEEEEEcCCCCEEEEEeCC----------
Q 004603 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHD---------- 576 (743)
Q Consensus 508 ~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~siafspdg~~LaSgs~D---------- 576 (743)
+++-|.....+..++.... ...+..+..+. .-......+.+ ++++.+.|+.+
T Consensus 21 yv~GG~~~~~~~~~d~~~~---------------~~~W~~l~~~p~~~R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 21 YVGLGSAGTSWYKLDLKKP---------------SKGWQKIADFPGGPRNQAVAAAI--DGKLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred EEEccccCCeeEEEECCCC---------------CCCceECCCCCCCCcccceEEEE--CCEEEEEeCCCCCCCCCccee
Q ss_pred -CcEEEEECCCCeEEEEEcccCCCEEEEEEc--CCCCEEEEEeCC-----------------------------------
Q 004603 577 -KKAVLWCTESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSAD----------------------------------- 618 (743)
Q Consensus 577 -g~V~IWd~~t~~~i~~l~~H~~~V~~vafs--p~~~~LaSgs~D----------------------------------- 618 (743)
..+..||..+.+-...-........+.+.. -++++.+.|+.+
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred cccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Q ss_pred ----CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEECCCCeeeEEEeccCce---
Q 004603 619 ----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKVCNLM--- 685 (743)
Q Consensus 619 ----g~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D------g~IrvWDl~tg~~v~~~~~~~~i--- 685 (743)
..|.+||..+.......-.............-++. +++.|+.+ ..+.+||+...+........-..
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~ 242 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNK-LLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKS 242 (346)
T ss_pred cCccceEEEEECCCCceeECccCCCCcCCCceEEEECCE-EEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCC
Q ss_pred ----------eeecCCCEEEEEecC----------------------CeEEEEecccceEEEEecCC--CCEEEEEeCCC
Q 004603 686 ----------PIILKGCFILNSIFN----------------------CYLLLHRIFLNLLSVSEWCN--PDEISTSSWKD 731 (743)
Q Consensus 686 ----------~~s~~g~~l~sgs~D----------------------g~I~vh~~~v~~l~v~~~~~--~~~laSgs~DG 731 (743)
....++...+.|+.+ ..+.+++............+ .....+...++
T Consensus 243 ~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~ 322 (346)
T TIGR03547 243 SSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNN 322 (346)
T ss_pred CccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCC
Q ss_pred eEEEe
Q 004603 732 SCCSH 736 (743)
Q Consensus 732 ~V~iW 736 (743)
.|+++
T Consensus 323 ~iyv~ 327 (346)
T TIGR03547 323 GVLLI 327 (346)
T ss_pred EEEEE
Done!