Query 004603
Match_columns 743
No_of_seqs 623 out of 3507
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 18:18:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004603.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1901-1904//hhsearch_pdb/004603hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 240.6 33.4 246 474-739 122-410 (410)
2 1vyh_C Platelet-activating fac 1.0 1 1 239.4 33.5 227 477-739 106-368 (410)
3 4gqb_B Methylosome protein 50; 1.0 1 1 237.6 32.6 217 507-739 94-330 (344)
4 2ynn_A Coatomer subunit beta'; 1.0 1 1 236.4 34.7 228 478-739 12-258 (304)
5 3dm0_A Maltose-binding peripla 1.0 1 1 233.3 33.5 215 503-739 439-692 (694)
6 1got_B GT-beta; complex (GTP-b 1.0 1 1 232.8 35.2 246 474-737 69-340 (340)
7 3iz6_a 40S ribosomal protein R 1.0 1 1 231.7 27.8 253 474-739 80-374 (380)
8 2pbi_B Guanine nucleotide-bind 1.0 1 1 231.7 35.4 220 503-737 115-354 (354)
9 3ow8_A WD repeat-containing pr 1.0 1 1 229.1 33.8 216 504-740 90-321 (321)
10 1nr0_A Actin interacting prote 1.0 1 1 228.5 33.7 230 505-740 250-611 (611)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=240.62 Aligned_cols=246 Identities=17% Similarity=0.241 Sum_probs=193.8
Q ss_pred CCCCCCCCCEEEEEECCCCCC---CCCCC-----CCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 334789981189992489953---32368-----6446799789982279948998269999987743432223778401
Q 004603 474 LQHNGASSKSLLMFGSDGMGS---LTSAP-----NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~l~~~~d~~~~---l~~s~-----~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
+...++.+..+.+|+...... +.... -.+.+.++++++|+.|+.|++|+... .
T Consensus 122 ~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-------------------~ 182 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-------------------F 182 (410)
T ss_dssp EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-------------------S
T ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-------------------C
T ss_conf 899993898599998999937788816678687899859999999991898199995899-------------------8
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 25798407999968999928999999995899299997799818899704697779999969999899995999099998
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWD 625 (743)
..+..+.+|...|.+++|+|++.+|++|+.|++|++||++++.++.++.+|...|.+++|+|++.+|++++.|++|++||
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf 26699828999778999967999999996899699998999948999927886289999989999999991899099998
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEECCC-------------------CCEEEEEECCCCEEEEECCCCEEEEEEECCC---
Q ss_conf 889982489981489985899991699-------------------9099998179929999899990669996247---
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPSK-------------------EDLLCSCDNNSEIRYWSINNGSCAGVFKVCN--- 683 (743)
Q Consensus 626 l~~~~~~i~~~~gh~~~V~sl~fsp~g-------------------~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~--- 683 (743)
++++. +...+.+|...|.+++|+|++ ..++++++.|+.|++||++++.++..+.+|.
T Consensus 263 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v 341 (410)
T 1vyh_C 263 VATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341 (410)
T ss_dssp TTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred CCCCC-EEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 98974-36673378745899998586554310121255555667888899999389849999889996699997788858
Q ss_pred -CEEEECCCCEEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCEEEEECCC
Q ss_conf -124630799999996598599995631------------13898731899989999699909996799
Q 004603 684 -LMPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 684 -~i~~s~~g~~l~sgs~Dg~i~i~~~~v------------~~l~v~~~~~~~~i~Sgs~DG~V~iWd~~ 739 (743)
.+.|++++.++++++.|++|++|+... .+.++.+.++..++++|+.||+|++|+.+
T Consensus 342 ~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 342 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 999994998999999597929999899990689984777868999982899999999279948997379
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=239.35 Aligned_cols=227 Identities=19% Similarity=0.280 Sum_probs=196.6
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 78998118999248995332368644679978998227994899826999998774343222377840125798407999
Q 004603 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.+...+.++.|++++ .++++|+.|+.|++|+...+ .....+.+|.+
T Consensus 106 gh~~~V~~~~~~p~~---------------~~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~~ 151 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVF---------------SVMVSASEDATIKVWDYETG-------------------DFERTLKGHTD 151 (410)
T ss_dssp CCSSCEEEEEECSSS---------------SEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSS
T ss_pred CCCCCEEEEEECCCC---------------CEEEEEECCCEEEEEECCCC-------------------CEEEEEECCCC
T ss_conf 667768999996999---------------98999938985999989999-------------------37788816678
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE
Q ss_conf 96899992899999999589929999779981889970469777999996999989999599909999888998248998
Q 004603 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 557 ~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~ 636 (743)
.|.+++|+|++++|++|+.|++|++||+.+.+++.++.+|...|.+++|+|++.+|++++.|++|++||++++. ++.++
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~ 230 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTF 230 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC-EEEEE
T ss_conf 68789985999999999189819999589982669982899977899996799999999689969999899994-89999
Q ss_pred ECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC----EEEECC--------------------CC
Q ss_conf 148998589999169990999981799299998999906699962471----246307--------------------99
Q 004603 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILK--------------------GC 692 (743)
Q Consensus 637 ~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~----i~~s~~--------------------g~ 692 (743)
.+|...|.++.|+|++. ++++++.|+.|++||++++++...+..|.. +.|+++ +.
T Consensus 231 ~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp ECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred ECCCCCEEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 27886289999989999-99999189909999898974366733787458999985865543101212555556678888
Q ss_pred EEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCEEEEECCC
Q ss_conf 999996598599995631------------13898731899989999699909996799
Q 004603 693 FILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 693 ~l~sgs~Dg~i~i~~~~v------------~~l~v~~~~~~~~i~Sgs~DG~V~iWd~~ 739 (743)
++++++.|+.|++|+... .+..+.+.+++.++++++.||+|++||..
T Consensus 310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 99999389849999889996699997788858999994998999999597929999899
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=237.56 Aligned_cols=217 Identities=18% Similarity=0.191 Sum_probs=179.3
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 78998227994899826999998774343222377840125798407999968999928999999995899299997799
Q 004603 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s 586 (743)
+.+++|+.|+.|++|+...+. ........+.+|.+.|++++|+|++++|++|+.|++|++||+.+
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~---------------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENE---------------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTS---------------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEEECCCEEEEEECCCCC---------------CEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 829999897989999653887---------------43586013467899789999989989999994989399999999
Q ss_pred CEEEEEECCCCCCEEEEEECCCC-CEEEEEECCCEEEEEECCCCCEEEEEE--ECCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 81889970469777999996999-989999599909999888998248998--148998589999169990999981799
Q 004603 587 FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~vafsp~~-~~LvSgs~Dg~IriWDl~~~~~~i~~~--~gh~~~V~sl~fsp~g~~lL~Sgs~Dg 663 (743)
++++.++.+|...|++++|++++ .+|++++.|++|++||++++.. +..+ ..+...+.+++|+|++..++++++.|+
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CCEEEEECCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCE-EEEEECCEEECCCEEEEECCCCCCCEEEECCCC
T ss_conf 9699997576885578886589997401103443551023445520-011101000012123566179996058861587
Q ss_pred CEEEEECCCCEEEEEEECCCC----EEEECCC-CEEEEEECCCEEEEEECCCC-----------EEEEEECCCC-CEEEE
Q ss_conf 299998999906699962471----2463079-99999965985999956311-----------3898731899-98999
Q 004603 664 EIRYWSINNGSCAGVFKVCNL----MPIILKG-CFILNSIFNCYLLLHRIFLN-----------LLSVSEWCNP-DEIST 726 (743)
Q Consensus 664 ~IriWDl~s~~~v~~l~~~~~----i~~s~~g-~~l~sgs~Dg~i~i~~~~v~-----------~l~v~~~~~~-~~i~S 726 (743)
.|++||+++++++..+.+|.. +.|++++ .+|++++.|++|++|+.... +.++.+.+++ ..+++
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEE
T ss_conf 18989899995989983788998899992699909999938994999999999699972889977899991799969999
Q ss_pred EECCCEEEEECCC
Q ss_conf 9699909996799
Q 004603 727 SSWKDSCCSHREL 739 (743)
Q Consensus 727 gs~DG~V~iWd~~ 739 (743)
+++|++|++|+-.
T Consensus 318 ~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 318 VGWDHQVVHHVVP 330 (344)
T ss_dssp EETTSCEEEEECC
T ss_pred ECCCCEEEEEECC
T ss_conf 9379959999899
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=1.00 E-value=1 Score=236.37 Aligned_cols=228 Identities=15% Similarity=0.173 Sum_probs=169.0
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 89981189992489953323686446799789982279948998269999987743432223778401257984079999
Q 004603 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
....+..+.|+|++ .++++++.|+.|++|+...+ ..+..+..|...
T Consensus 12 h~~~V~~~~fsp~~---------------~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~ 57 (304)
T 2ynn_A 12 RSDRVKGIDFHPTE---------------PWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETP 57 (304)
T ss_dssp ECSCEEEEEECSSS---------------SEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSC
T ss_pred CCCCEEEEEECCCC---------------CEEEEECCCCCEEEEECCCC-------------------CEEEEEECCCCC
T ss_conf 88856899989999---------------87999827996999878888-------------------266776056774
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE
Q ss_conf 68999928999999995899299997799818899704697779999969999899995999099998889982489981
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~ 637 (743)
|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++++..+...+.
T Consensus 58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred EEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCHHHHHC
T ss_conf 88999968999899988999799999999967899807998089999959999999987998199998999922310105
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC-----CEEEE--CCCCEEEEEECCCEEEEEECCC
Q ss_conf 4899858999916999099998179929999899990669996247-----12463--0799999996598599995631
Q 004603 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-----LMPII--LKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 638 gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~-----~i~~s--~~g~~l~sgs~Dg~i~i~~~~v 710 (743)
+|...|.+++|+|.+..++++++.|+.|++||++.......+..+. .+.+. +++.++++++.|++|++|+...
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred CCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCEEEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 66895799998889999899991898399998999976633216874757789999869999999986999199996789
Q ss_pred C------------EEEEEECCCCCEEEEEECCCEEEEECCC
Q ss_conf 1------------3898731899989999699909996799
Q 004603 711 N------------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 711 ~------------~l~v~~~~~~~~i~Sgs~DG~V~iWd~~ 739 (743)
. +..+.+.++...+++++.||+|++||..
T Consensus 218 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 86024647988888999988999989999389959999899
No 5
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=233.30 Aligned_cols=215 Identities=18% Similarity=0.251 Sum_probs=174.7
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 67997899822799489982699999877434322237784012579840799996899992899999999589929999
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IW 582 (743)
.+.++++++|+.|+.|++|+...+ .....+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLAAG-------------------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCCCEEEEEECCCCEEEEECCCC-------------------CCEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 799999999808992899979999-------------------5136886799988999990899989999488979999
Q ss_pred ECCCCEEEEEE---CCCCCCEEEEEECCCC--CEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEE
Q ss_conf 77998188997---0469777999996999--989999599909999888998248998148998589999169990999
Q 004603 583 CTESFTVKSTL---EEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 583 Dl~s~~~~~~l---~~H~~~V~~vafsp~~--~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~ 657 (743)
|.......... .+|...|.|++|+|++ ..+++++.|++|++||+++.. +...+.+|...|.+++|+|++. +++
T Consensus 500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~-~l~ 577 (694)
T 3dm0_A 500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGS-LCA 577 (694)
T ss_dssp CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred ECCCCCCEEECCCCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCC-EEEEECCCCCCEEEEEEECCCC-EEE
T ss_conf 78998540430377888786799999179886559999689859999899992-7899867888888999918989-899
Q ss_pred EEECCCCEEEEECCCCEEEEEEECC---CCEEEECCCCEEEEEECCCEEEEEECCCC-----------------------
Q ss_conf 9817992999989999066999624---71246307999999965985999956311-----------------------
Q 004603 658 SCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFLN----------------------- 711 (743)
Q Consensus 658 Sgs~Dg~IriWDl~s~~~v~~l~~~---~~i~~s~~g~~l~sgs~Dg~i~i~~~~v~----------------------- 711 (743)
+++.|+.|++||+++++++..+..+ ..++|++++.+++++. ++.|++|+....
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA 656 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC------------
T ss_pred EEECCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEC-CCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99589949999889995678833899478999859986899976-99789998999987332002456532002456645
Q ss_pred --------EEEEEECCCCCEEEEEECCCEEEEECCC
Q ss_conf --------3898731899989999699909996799
Q 004603 712 --------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 712 --------~l~v~~~~~~~~i~Sgs~DG~V~iWd~~ 739 (743)
+.++.+.+++.+|++|+.||+|++|+-.
T Consensus 657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCEEEEEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 677404775148986899989997589849998535
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=232.77 Aligned_cols=246 Identities=15% Similarity=0.247 Sum_probs=194.3
Q ss_pred CCCCCCCCCEEEEEECCCCCCC---C-----CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 3347899811899924899533---2-----3686446799789982279948998269999987743432223778401
Q 004603 474 LQHNGASSKSLLMFGSDGMGSL---T-----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~l~~~~d~~~~l---~-----~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
+...++.+..+.+|.......+ . .....+.+.++++++|+.|+.+++|+..... ...
T Consensus 69 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---------------~~~ 133 (340)
T 1got_B 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE---------------GNV 133 (340)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS---------------BSC
T ss_pred EEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC---------------CCC
T ss_conf 99998188968999899987433760388618899999999999998089819999796688---------------861
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 25798407999968999928999999995899299997799818899704697779999969999899995999099998
Q 004603 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWD 625 (743)
.....+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCCEEEEEECCCCC-EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 36778448776389999879996-99998999299998999918899769998668999989999999993899399977
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC------CCEEEECCCCEEEEEEC
Q ss_conf 889982489981489985899991699909999817992999989999066999624------71246307999999965
Q 004603 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC------NLMPIILKGCFILNSIF 699 (743)
Q Consensus 626 l~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~------~~i~~s~~g~~l~sgs~ 699 (743)
++++. ++.++.+|...|.+++|+|++. ++++++.|+.|++||++.++.+..+... ..+.|++++.++++++.
T Consensus 213 ~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 290 (340)
T 1got_B 213 VREGM-CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp TTTCS-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCCCE-EEEEECCCCCCEEEEEECCCCC-EEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECC
T ss_conf 89981-6789748768779999949999-899974898199998899918999726885241699999899999999779
Q ss_pred CCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCEEEEEC
Q ss_conf 98599995631------------138987318999899996999099967
Q 004603 700 NCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 700 Dg~i~i~~~~v------------~~l~v~~~~~~~~i~Sgs~DG~V~iWd 737 (743)
|+.+++|+... .+.++.+.+++..+++|+.|++|++||
T Consensus 291 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 99099988413838658505778488999829999899972886189559
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=231.72 Aligned_cols=253 Identities=18% Similarity=0.283 Sum_probs=195.7
Q ss_pred CCCCCCCCCEEEEEECCCCCC---C-----CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 334789981189992489953---3-----23686446799789982279948998269999987743432223778401
Q 004603 474 LQHNGASSKSLLMFGSDGMGS---L-----TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~l~~~~d~~~~---l-----~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
+...++.+..+.+|....... + ......+.+.++++++|+.|+.+++|+....... ....
T Consensus 80 ~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~------------~~~~ 147 (380)
T 3iz6_a 80 WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR------------DGNM 147 (380)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC------------CCSS
T ss_pred EEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCC------------CCCC
T ss_conf 8999918980999878888601488559987899999899998999547985899989777555------------6773
Q ss_pred EEEEEEECCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCEEEEEE-----CCCCCCEEEEEECC-CCCEEEEEECC
Q ss_conf 257984079999689999289-999999958992999977998188997-----04697779999969-99989999599
Q 004603 546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL-----EEHTQWITDVRFSP-SLSRLATSSAD 618 (743)
Q Consensus 546 ~~~~~l~~H~~~V~si~fspd-g~~Lasgs~Dg~V~IWDl~s~~~~~~l-----~~H~~~V~~vafsp-~~~~LvSgs~D 618 (743)
.....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ ++.+|++|+.|
T Consensus 148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227 (380)
T ss_dssp TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred CCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECC
T ss_conf 31264068975468999964899789997799819999867795789960566788756769999206999989999789
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC-----------CCEEE
Q ss_conf 9099998889982489981489985899991699909999817992999989999066999624-----------71246
Q 004603 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-----------NLMPI 687 (743)
Q Consensus 619 g~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~-----------~~i~~ 687 (743)
++|++||++....++..+.+|...|.+++|+|++. +|++++.|++|++||++++.++..+..+ ..++|
T Consensus 228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf 86999978889734699887488757999916999-69998389969999888996889861565556655686389998
Q ss_pred ECCCCEEEEEECCCEEEEEECCC----------------CEEEEEECCCCCEEEEEECCCEEEEECCC
Q ss_conf 30799999996598599995631----------------13898731899989999699909996799
Q 004603 688 ILKGCFILNSIFNCYLLLHRIFL----------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 688 s~~g~~l~sgs~Dg~i~i~~~~v----------------~~l~v~~~~~~~~i~Sgs~DG~V~iWd~~ 739 (743)
++++.++++++.|+.+.+|+... .+.++.+.+++..+++|++|++|++|+-.
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 89999899997999799998877815789702367777845799989999989996089988999537
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=231.68 Aligned_cols=220 Identities=14% Similarity=0.271 Sum_probs=179.9
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 67997899822799489982699999877434322237784012579840799996899992899999999589929999
Q 004603 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IW 582 (743)
.+.+.++++|+.|+.+++|....+.. .........+.+|.+.|.+++|+|++..|++++.|++|++|
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~-------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lw 181 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKN-------------ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 181 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTT-------------CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEECCCCEEEEEEECCCC-------------CCCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 89999799713899889999742566-------------55333311630667847899996899999999189958997
Q ss_pred ECCCCEEEEEECCCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 7799818899704697779999969--99989999599909999888998248998148998589999169990999981
Q 004603 583 CTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 583 Dl~s~~~~~~l~~H~~~V~~vafsp--~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs 660 (743)
|+++++.+..+.+|...|.+++|+| ++.+|++++.|++|++||++++. ++..+.+|...|.+++|+|++. ++++++
T Consensus 182 d~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~-~l~s~s 259 (354)
T 2pbi_B 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGD-AFASGS 259 (354)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred ECCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCC-EEEEECCCCCCEEEEEEECCCC-EEEEEE
T ss_conf 67778199999278998699998757999999999479959999888992-7798358878817999958999-899996
Q ss_pred CCCCEEEEECCCCEEEEEEECC------CCEEEECCCCEEEEEECCCEEEEEECCC------------CEEEEEECCCCC
Q ss_conf 7992999989999066999624------7124630799999996598599995631------------138987318999
Q 004603 661 NNSEIRYWSINNGSCAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPD 722 (743)
Q Consensus 661 ~Dg~IriWDl~s~~~v~~l~~~------~~i~~s~~g~~l~sgs~Dg~i~i~~~~v------------~~l~v~~~~~~~ 722 (743)
.|++|++||++.++.+..+..+ ..+.|++++.++++++.|+.+++|+... .+.++.+.+++.
T Consensus 260 ~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 339 (354)
T 2pbi_B 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGT 339 (354)
T ss_dssp TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 99819999888996788874787403455999947999999997899299998988955779987899578999989999
Q ss_pred EEEEEECCCEEEEEC
Q ss_conf 899996999099967
Q 004603 723 EISTSSWKDSCCSHR 737 (743)
Q Consensus 723 ~i~Sgs~DG~V~iWd 737 (743)
++++|++|++|++|+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEECCCCCEEECC
T ss_conf 999982888889619
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=229.15 Aligned_cols=216 Identities=19% Similarity=0.263 Sum_probs=184.5
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 79978998227994899826999998774343222377840125798407999968999928999999995899299997
Q 004603 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 504 ~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWD 583 (743)
....++++++.|+.|++|+...+ +.+..+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~-------------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~ 150 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENG-------------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCC-------------------CEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 99998999937980999978999-------------------79899937985679999999999899983899199998
Q ss_pred CCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 79981889970469777999996999989999599909999888998248998148998589999169990999981799
Q 004603 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 584 l~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg 663 (743)
+++++....+..|...|.+++|+|++.+|++++.|+.|++||++++. ++..+.+|...|.+++|+|++. +|++++.|+
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg 228 (321)
T 3ow8_A 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDG 228 (321)
T ss_dssp TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSC-EEEEECTTS
T ss_pred CCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCC-EEEEECCCCCCEEEEEECCCCC-EEEEECCCC
T ss_conf 67994667743899429999998999999999289839999999990-9999802589601899948999-899990998
Q ss_pred CEEEEECCCCEEEEEEECCCC----EEEECCCCEEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEE
Q ss_conf 299998999906699962471----24630799999996598599995631------------13898731899989999
Q 004603 664 EIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTS 727 (743)
Q Consensus 664 ~IriWDl~s~~~v~~l~~~~~----i~~s~~g~~l~sgs~Dg~i~i~~~~v------------~~l~v~~~~~~~~i~Sg 727 (743)
.|++||++.+.++..+.+|.. +.|++++.++++++.|++|++|+... .+..+.+.+++..|+++
T Consensus 229 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 229 YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 09998789963258986888826899997999989998189809999499988888983787738999998999999997
Q ss_pred ECCCEEEEECCCC
Q ss_conf 6999099967995
Q 004603 728 SWKDSCCSHRELY 740 (743)
Q Consensus 728 s~DG~V~iWd~~~ 740 (743)
+.||+|++||..+
T Consensus 309 ~~d~~i~vwd~p~ 321 (321)
T 3ow8_A 309 GDDQEIHIYDCPI 321 (321)
T ss_dssp ETTCCEEEEECC-
T ss_pred ECCCEEEEEECCC
T ss_conf 5898089995779
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=228.54 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=166.4
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCC---------------------------CCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 9978998227994899826999998---------------------------7743432223778401257984079999
Q 004603 505 MDRFVDDGSLDDNVESFLSPDDADP---------------------------RDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~iw~s~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
.++++++++.|++|++|+...+... .+...++|+...+ .....+.+|...
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~gh~~~ 326 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG---SIDQVRYGHNKA 326 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT---EEEEEECCCSSC
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCC---CCCEEECCCCCC
T ss_conf 99999999089809999688870134404788766406899973887999958996899968899---744698378888
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE-CC-----------------------------------------
Q ss_conf 689999289999999958992999977998188997-04-----------------------------------------
Q 004603 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----------------------------------------- 595 (743)
Q Consensus 558 V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l-~~----------------------------------------- 595 (743)
|++++|+|++++|++++.|++|++||+.++.....+ .+
T Consensus 327 v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~ 406 (611)
T 1nr0_A 327 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV 406 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred EEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEE
T ss_conf 89999918999899995898499997887925632166776507899987899699998489668954688543565212
Q ss_pred ----------------------------------------CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE-EE
Q ss_conf ----------------------------------------6977799999699998999959990999988899824-89
Q 004603 596 ----------------------------------------HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LR 634 (743)
Q Consensus 596 ----------------------------------------H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~-i~ 634 (743)
|...+.+++|+|++.+|++++.|++|++||+...... +.
T Consensus 407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~ 486 (611)
T 1nr0_A 407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 486 (611)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 00148997079980799699999676399984894346406889549999289989999689973999994599222410
Q ss_pred EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCC-CEEEEE--EECC----CCEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 98148998589999169990999981799299998999-906699--9624----7124630799999996598599995
Q 004603 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV--FKVC----NLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 635 ~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s-~~~v~~--l~~~----~~i~~s~~g~~l~sgs~Dg~i~i~~ 707 (743)
. .+|...|.+++|+|++. +|++++.|++|++|++.+ ++++.. +..| ..++|+|++.+|++++.|++|++|+
T Consensus 487 ~-~~h~~~v~~v~fspdg~-~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 487 T-IVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp E-EECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred C-CCCCCCEEEEEECCCCC-EEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 1-57788607999989999-899994899899988577872232102640466425899899899799997997299997
Q ss_pred CCC---------------CEEEEEECCCCCEEEEEECCCEEEEECCCC
Q ss_conf 631---------------138987318999899996999099967995
Q 004603 708 IFL---------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 708 ~~v---------------~~l~v~~~~~~~~i~Sgs~DG~V~iWd~~~ 740 (743)
... .+.++.+.+++ .+++++.|++|++|+-.|
T Consensus 565 ~~~~~~~~~~~~~~h~~~~v~~v~fs~d~-~l~s~~~D~~i~lW~~~~ 611 (611)
T 1nr0_A 565 MNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWNVPF 611 (611)
T ss_dssp TTCTTSCCEEETTSSTTSCEEEEEEEETT-EEEEEETTSCEEEEECCC
T ss_pred CCCCCCCCCHHHCCCCCCCEEEEEECCCC-EEEEECCCCCEEEEECCC
T ss_conf 88755563264446765671189985899-799952887789984449
Done!