BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004604
(743 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 220 bits (561), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 197/394 (50%), Gaps = 76/394 (19%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGILAD GLGKT+ I+L+ + S ++ S + N + DKV
Sbjct: 414 GGILADAMGLGKTVMTISLL-LAHSWKAASTGFLCPNYEG----------------DKVI 456
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRR-------PAAGTLVVCPASVLRQWARELEDKVPDK 410
+ DD+ P +T F +R G L+VCP ++L QW E+E
Sbjct: 457 SSS-VDDLTSPPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHA-KP 514
Query: 411 AALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSS 470
+LSV +++G SR KD L++ DVV+TTY ++T+E ++ S D E
Sbjct: 515 GSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHE-------------- 560
Query: 471 EFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQV 530
+ V WFR+VLDEA TIKN ++Q+
Sbjct: 561 -----------------------------------GIYAVRWFRIVLDEAHTIKNSKSQI 585
Query: 531 ARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHG 590
+ A +L A RRWCL+GTPIQN+++DLYS RFL+ +P+ + + ++ P G
Sbjct: 586 SLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERG 645
Query: 591 YKKLQAVLRAIMLRRTK-GTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKK 649
K +Q++L+ IMLRRTK T +G+PI+ LPP + + S+ E FY L S K
Sbjct: 646 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVK 705
Query: 650 FKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
F F + G V NYA+IL +LLRLRQ CDHP LV
Sbjct: 706 FDQFVEQGKVLHNYASILELLLRLRQCCDHPFLV 739
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.02 PE=3 SV=1
Length = 1040
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 144/431 (33%), Positives = 210/431 (48%), Gaps = 101/431 (23%)
Query: 257 LNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316
+N P + P GL+ L++HQK L W+ + E S GGILADD GLGKT+ +AL
Sbjct: 373 VNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESSKK--GGILADDMGLGKTVQALAL 429
Query: 317 IQMQRSLQSKS-KTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTST 375
+ + R +SKS KT ++ I PV
Sbjct: 430 L-VTRPPESKSVKTTLI--------------------------------ITPV------- 449
Query: 376 RSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE-LAKYD 434
S+L+QW E+ K+ +V I+HG S+ E L YD
Sbjct: 450 ------------------SLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYD 491
Query: 435 VVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKG 494
+VLTTY+++ E + + D+ D N KK ++
Sbjct: 492 IVLTTYNVIAYEFKNKMAYDKSIED---------------NAPIKKFEHL---------- 526
Query: 495 NVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSI 554
P + W+RV+LDEAQTIKN T AR CC L + RWCLSGTP+QN +
Sbjct: 527 -----------PFFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGV 575
Query: 555 DDLYSYFRFLKYDPYAVYKSFYSTIKIPISR--NSLHGYKKLQAVLRAIMLRRTKGTFID 612
++ YS +FL+ PY+ + SF IP+S N+ K+ + +L+A++LRRTK T ID
Sbjct: 576 EEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKNTKID 635
Query: 613 GQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLR 672
G+PI+ LPPKT ++ D S E FY L+S + + + + GT+ +Y ++L++LLR
Sbjct: 636 GKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLVLLLR 695
Query: 673 LRQACDHPLLV 683
LRQAC HP L+
Sbjct: 696 LRQACCHPWLI 706
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 138/405 (34%), Positives = 196/405 (48%), Gaps = 90/405 (22%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGILAD GLGKT+ IALI + GN + E + + D NA K
Sbjct: 682 GGILADAMGLGKTVMTIALILARPGR---------GNPENEDVLVAD----VNADKRNRK 728
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKV-PDKAALSVL 416
E + + + GTL++CP ++L QW ELE PD +SVL
Sbjct: 729 EIH---------------MALTTVKAKGGTLIICPMALLSQWKDELETHSKPD--TVSVL 771
Query: 417 IYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNK 476
+Y+GG RT D +A +DVVLTTY ++T+
Sbjct: 772 VYYGGDRTHDAKAIASHDVVLTTYGVLTS------------------------------- 800
Query: 477 KRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCS 536
K ++ +SI ++ W+R+VLDEA TIK+ +TQ A+A
Sbjct: 801 --------------AYKQDMANSI------FHRIDWYRIVLDEAHTIKSWKTQAAKATFE 840
Query: 537 LRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQA 596
L + RWCL+GTP+QN ++DLYS FL +P+ + + I+ P G K ++A
Sbjct: 841 LSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKA 900
Query: 597 VLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFAD 655
+LR +MLRRTK T +G I+ LPP + + + + S+ E FY L S +F F
Sbjct: 901 ILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVA 960
Query: 656 AGTVNQNYANILLMLLRLRQACDHPLLV------KEY-DFDSVGK 693
G V NYANIL +LLRLRQ C+HP LV ++Y D DS+ +
Sbjct: 961 QGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLAR 1005
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 203 bits (516), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 223/490 (45%), Gaps = 100/490 (20%)
Query: 218 SVSMTQFGGPSDLAYRS--GSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNL 275
S S T FG + + G+ D+R+V +L+ + L V A P ++ L
Sbjct: 174 SESDTSFGLSEAVVVKEQMGNGDKRSVDKIFKLVDENV--KLMGKLVAAEPPREVIKSEL 231
Query: 276 LKHQKIALAWMLQKETRS-------------LHCL-------------GGILADDQGLGK 309
HQK L W+L +E L+ L GG+ ADD GLGK
Sbjct: 232 FAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKRPDPLRGGVFADDMGLGK 291
Query: 310 TISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVP 369
T+++++LI R + + T E L+ + D ++ ES K +
Sbjct: 292 TLTLLSLIAFDRYGNASTSTPT-----EEPLDGEGDKIEKKGKKRGRGKSSESVTRKKLK 346
Query: 370 EVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDK-VPDKAALSVLIYHGGSRTKDPV 428
+ S++ TL+VCP SV+ W +LE+ VP L V +YHGG RT D
Sbjct: 347 TDDVVGMNVSQK----TTLIVCPPSVISAWITQLEEHTVP--GILKVYMYHGGERTDDVN 400
Query: 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRG 488
EL KYD+VLTTY + +V+E D
Sbjct: 401 ELMKYDIVLTTYGTL--------AVEESWED----------------------------- 423
Query: 489 KKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGT 548
P+ K+ W R++LDEA TIKN Q +R C L+A RRW ++GT
Sbjct: 424 ----------------SPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGT 467
Query: 549 PIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKG 608
PIQN DLYS FL+++P+++ + S I+ P+ + + G +LQ ++ I LRRTK
Sbjct: 468 PIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTK- 526
Query: 609 TFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL 668
+ +I LPPKT+ V+ S EE Y +E ++ + + G++ +NY+ +L
Sbjct: 527 ----EKSLIGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLS 582
Query: 669 MLLRLRQACD 678
++LRLRQ CD
Sbjct: 583 IILRLRQLCD 592
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.12 PE=3 SV=1
Length = 897
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 147/441 (33%), Positives = 197/441 (44%), Gaps = 103/441 (23%)
Query: 259 QPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
Q K E GLL V+LL HQ AWM E S C GG++ADD GLGKTI IAL
Sbjct: 235 QLKNEQVQSAGLL-VSLLPHQVEGHAWMESMEQSS-KC-GGVMADDMGLGKTIQTIAL-- 289
Query: 319 MQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSF 378
L QK++ D +++T
Sbjct: 290 -------------LLTQKSQ---------------DPLRKTN------------------ 303
Query: 379 SRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELAKYDVVL 437
L+V ++L QWA EL KV LSV I+HG ++ D EL++YDVVL
Sbjct: 304 ---------LIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVL 354
Query: 438 TTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 497
TTYS++ E+ K+ N
Sbjct: 355 TTYSMLAYEM--------------------------------------KQNDAFNNNNPA 376
Query: 498 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDL 557
++ L + W+R+VLDEA TI+N T A+ C L AK RWCLSGTPIQN ID+
Sbjct: 377 TATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEF 436
Query: 558 YSYFRFLKYDPYAVYKSFYSTIKIPIS--RNSL--HGYKKLQAVLRAIMLRRTKGTFIDG 613
YS +FL+ PY V+ F I P+ R + K+L+ +L + + RRTK T ++
Sbjct: 437 YSLLKFLRIKPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTKETRVNN 496
Query: 614 QPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRL 673
PI+NLPPKTI V+ EE A Y + S + + + Y +L+ LLRL
Sbjct: 497 LPIVNLPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRL 556
Query: 674 RQACDHPLLVKEYDFDSVGKI 694
RQ C HP LVK D+ +I
Sbjct: 557 RQFCCHPWLVKSSSLDNSFRI 577
>sp|Q10332|YBMA_SCHPO Uncharacterized ATP-dependent helicase C582.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC582.10c PE=1 SV=1
Length = 830
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/474 (29%), Positives = 212/474 (44%), Gaps = 114/474 (24%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCL-GGILADDQGLGKTISIIALIQMQRSLQSKSKT 329
+ + LL HQ L W+ +ET S GGILADD GLGKTI +IALI
Sbjct: 229 MHIRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALILSH--------- 279
Query: 330 EVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLV 389
P+P+ S +S TLV
Sbjct: 280 -------------------------------------PLPKKKHSIKS---------TLV 293
Query: 390 VCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPK 449
V P S+++QW E +V K+ L+ ++YHG SR K + +YDVV+TTY I+ +E
Sbjct: 294 VAPLSLIKQW----ESEVQTKSKLTAIVYHGASRYKLLKVIHEYDVVITTYQILVSEWVS 349
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509
+ G GK S + L
Sbjct: 350 HNTT----------------------------------GTDGKSPTEAKSYEKKKPSLFA 375
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569
W+R++LDEA TIKN ++ A ACC+L+ RWCL+GTP+QN++D+LYS +FL +P+
Sbjct: 376 FYWWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPF 435
Query: 570 AVYKSFYSTIKIPISRNSLH-GYKKLQAVLRAIMLRRTKGTFIDGQP-------IINLPP 621
+ I +P+ + + +K+L+ +L IMLRRTK T ++ + L
Sbjct: 436 NDQSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTK-TLLEANAGKDGTGGALKLSK 494
Query: 622 KTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPL 681
+ + F + E FY L + + F ++G + +NY NIL +LLRLRQAC+HP
Sbjct: 495 RLVYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHPQ 554
Query: 682 LVK---EYDFDSVGKISG-----EMAKRLPRDMLIDLLSRLETSS---AICCVC 724
+ E D D+ + G ++A D L +LL +E S + C +C
Sbjct: 555 SLNFQFEQDVDAFNALDGAANTNKLASDQDVDDLANLLETVEIGSRKKSFCTIC 608
>sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1
SV=2
Length = 1138
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 135/450 (30%), Positives = 215/450 (47%), Gaps = 117/450 (26%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTE 330
L V LL HQK ALAW+L +E++ GGILADD GLGKT+++IALI +++ Q KSK
Sbjct: 542 LKVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALILTKKN-QQKSK-- 596
Query: 331 VLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRS-FSRRRPAAGTLV 389
E + +PV +S + S F+ ++GTL+
Sbjct: 597 ------------------------------EKERSEPVTWLSKNDSSVFT----SSGTLI 622
Query: 390 VCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPK 449
VCPAS++ W E+E +V L + +YHG +R++ L+ YD+V+TTYS++ E+P
Sbjct: 623 VCPASLIHHWKNEVEKRVTSNR-LRIYLYHGPNRSRHAKVLSTYDIVITTYSLLAKEIP- 680
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509
++ GE G N S++ PL +
Sbjct: 681 --------TTKQEGEVPG----------------------------ANLSVEGTSAPLLQ 704
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569
V W R++LDEA +KN R Q + A C L+A+ RW ++GTPIQN++ D+YS +FL+ P+
Sbjct: 705 VVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPF 764
Query: 570 AVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTK 628
+S K + S+ G ++L + ++++LRRTK G+P++ LP + L +
Sbjct: 765 ----DEFSLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHR 820
Query: 629 VDFSKEEWAFYKKLESDSLKKFKAFAD------------------------AGTVNQ--- 661
+ S++E A Y + S +++ +V+Q
Sbjct: 821 LKLSEDERAVYDIFLARSRSALQSYLKRQEGRGSHHGRSPDNPFSRVAQEFGSSVSQGCP 880
Query: 662 -------NYANILLMLLRLRQACDHPLLVK 684
+ ++L LLRLRQ C H L+K
Sbjct: 881 AADSQRPSTVHVLSQLLRLRQCCCHLSLLK 910
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ULS1 PE=1 SV=1
Length = 1619
Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 144/450 (32%), Positives = 206/450 (45%), Gaps = 101/450 (22%)
Query: 251 QAALEDLNQPKV----EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQG 306
+A LE++ Q + EA P+ + +VNLLKHQ++ L W+LQ E + GG+LADD
Sbjct: 916 RALLENVKQSESIIDGEALTPEDM-TVNLLKHQRLGLHWLLQVENSAKK--GGLLADD-- 970
Query: 307 LGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIK 366
+G +I A+ M L N+ E+
Sbjct: 971 MGLGKTIQAIALM------------LANRSEES--------------------------- 991
Query: 367 PVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIY--HGGSRT 424
L+V P SVLR W ELE KV +A + I+ G +
Sbjct: 992 ----------------KCKTNLIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKV 1035
Query: 425 KDPVELAKYDVVLTTYSIVTNEVPKQ-PSVDEEEADEKNGETYGLSSEFSVNK-KRKKIS 482
K +LA+YD VL +Y + NE K P + +GE L + + R K S
Sbjct: 1036 KHWRDLARYDAVLVSYQTLANEFKKHWPK-------KLDGEQNQLPAVPHIQALNRLKTS 1088
Query: 483 NVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRR 542
N Y ++R++LDE Q IKN T+ ++ACC++ R
Sbjct: 1089 NEY----------------YSPFFCNDSTFYRILLDEGQNIKNKNTRASKACCTINGMYR 1132
Query: 543 WCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGY---------KK 593
W LSGTPIQNS+D+LYS RFL+ PY + F I RN + Y +K
Sbjct: 1133 WVLSGTPIQNSMDELYSLIRFLRIPPYHKEQRFKLDIGRFFQRNKQYQYDNEDRKNALRK 1192
Query: 594 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF 653
++ +L AIMLRR+K IDG+P++ LPPK + + + EE FY LES + K
Sbjct: 1193 VRVLLNAIMLRRSKADKIDGKPLLELPPKIVEVDESRLKGEELKFYTALESKNQALAKKL 1252
Query: 654 ADAGTVNQNYANILLMLLRLRQACDHPLLV 683
+ T +Y+++L +LLRLRQAC H LV
Sbjct: 1253 LNNSTRG-SYSSVLTLLLRLRQACCHSELV 1281
>sp|P34739|TTF2_DROME Transcription termination factor 2 OS=Drosophila melanogaster
GN=lds PE=1 SV=2
Length = 1061
Score = 186 bits (473), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 148/474 (31%), Positives = 212/474 (44%), Gaps = 125/474 (26%)
Query: 251 QAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKT 310
+LEDL P+V A P GL V+L+ HQK ALAWM +E + GGILADD GLGKT
Sbjct: 416 HVSLEDLPGPEVLAEDPVGL-KVSLMNHQKHALAWMSWRERKLPR--GGILADDMGLGKT 472
Query: 311 ISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPE 370
+++I+ + ++ Q S+ G ++ + +DD + + K G D
Sbjct: 473 LTMISSVLACKNGQEMSE----GKDESSDSDSEDDKNKKRKSVTGWKSKGRKD------- 521
Query: 371 VSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
+RR GTLVVCPAS+LRQW E+E KV + L+V ++HG +R L
Sbjct: 522 --------TRR---GGTLVVCPASLLRQWESEVESKV-SRQKLTVCVHHGNNRETKGKYL 569
Query: 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKK 490
YD+V+TTY IV E LS+ F V
Sbjct: 570 RDYDIVVTTYQIVAR------------------EHKSLSAVFGVK--------------- 596
Query: 491 GKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPI 550
W R++LDEA ++NH++Q + A C LR K RW L+GTPI
Sbjct: 597 ---------------------WRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPI 635
Query: 551 QNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF 610
QN D+Y+ +FL+ P+ T K I S G +L +++++MLRRTK
Sbjct: 636 QNKELDVYALLKFLRCSPF----DDLHTWKKWIDNKSAGGQNRLNLLMKSLMLRRTKAQL 691
Query: 611 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF----------------A 654
+ +LP K + L ++ KEE Y+ + + S F F A
Sbjct: 692 QSDGKLNSLPNKELRLIEISLDKEEMNVYQTVMTYSRTLFAQFLHQRAERETDFNYRSDA 751
Query: 655 DAGTVNQ-------------NYA------------NILLMLLRLRQACDHPLLV 683
+ T NQ +A +IL++LLRLRQ C HP L+
Sbjct: 752 NKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVLLLRLRQICCHPGLI 805
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3
SV=2
Length = 1245
Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 191/398 (47%), Gaps = 89/398 (22%)
Query: 295 HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLD 354
HCLGGILAD+ GLGKTI +++LI R N+ ++ +
Sbjct: 556 HCLGGILADEMGLGKTIEMLSLIHSHR-------------------NVSPSRQGPSSSTE 596
Query: 355 KVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALS 414
V+ S I P P TLVV P S+L QW E K ++ +
Sbjct: 597 LVRMPSSSSAILPAPNT---------------TLVVAPTSLLSQWESEAM-KASEQGTMK 640
Query: 415 VLIYHGGSRTKDPVEL------AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGL 468
VL+Y+G ++ + EL A ++++T+Y +V +E
Sbjct: 641 VLMYYGVDKSTNLQELCSAGNPAAPNIIITSYGVVLSE---------------------- 678
Query: 469 SSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRT 528
++ N N+ G L V +FRV+LDEA IKN R+
Sbjct: 679 -------------------SRQLAMFNSNTQ-----GGLFSVDFFRVILDEAHVIKNRRS 714
Query: 529 QVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI-SRNS 587
+ ARAC LRA RW L+GTPI N ++DL+S RFL+ +P+ + + + I +P S++
Sbjct: 715 KTARACYELRATHRWVLTGTPIVNRLEDLFSLVRFLQVEPWNNFSFWKTFITVPFESKDY 774
Query: 588 LHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS 646
+ +Q VL ++LRRTK +G+P++ LP +TI + +V+ S++E Y + + +
Sbjct: 775 VRALNVVQTVLEPLVLRRTKTMKTPEGEPLVPLPRRTIDIVEVELSEQEREIYDYIFTRA 834
Query: 647 LKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
+ F +AGT+ ++++ I +LRLRQ C HP+L +
Sbjct: 835 KRTFNDNIEAGTLLKSFSTIFAQILRLRQTCCHPILTR 872
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1
Length = 1198
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 187/392 (47%), Gaps = 60/392 (15%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGILAD G+GKT + +LI R + E +Q + + + D++ + + K K
Sbjct: 517 GGILADAMGMGKTCMMASLIHTNREEKPAGNLE---SQTRDGVEGEIDEEPASKRI-KFK 572
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLI 417
+ S+ + VP + SF R TLVVCP S+ QW EL K+ + +++ +
Sbjct: 573 QVTLSNQWRAVP-TAPKVESFPR-----ATLVVCPVSLAAQWHDELR-KMSQQGSINSYV 625
Query: 418 YHGGSRTKDPVELA-----KYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEF 472
++GG R LA + DV++T+Y +T+E K +
Sbjct: 626 WYGGDRVDIEALLAGDGKERVDVIVTSYGTLTSEYQK----------------------W 663
Query: 473 SVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVAR 532
K R +Y G L + R+VLDEA I+N V++
Sbjct: 664 LRTKDRP---------------------NYEGGSLYDHEFLRIVLDEAHNIRNRLAMVSK 702
Query: 533 ACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYK 592
AC L+ +RRW L+GTPI N ++DLYS FL+ P+ Y F S + +P
Sbjct: 703 ACYELKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNYSFFRSFVTVPFLNQDHKALN 762
Query: 593 KLQAVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 651
+Q +L + +LRR K DG+ I++LPPKT+ + + FS+ E YK LE + K+F
Sbjct: 763 VVQYILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKFLEERAKKRFI 822
Query: 652 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
G NY +IL ML++LRQ DHPLLV
Sbjct: 823 ELDADGRAMSNYTSILAMLMKLRQCVDHPLLV 854
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3
SV=1
Length = 1198
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 187/392 (47%), Gaps = 60/392 (15%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGILAD G+GKT + +LI R + E +Q + + + D++ + + K K
Sbjct: 517 GGILADAMGMGKTCMMASLIHTNREEKPAGNLE---SQTRDGVEGEIDEEPASKRI-KFK 572
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLI 417
+ S+ + VP + SF R TLVVCP S+ QW EL K+ + +++ +
Sbjct: 573 QVTLSNQWRAVP-TAPKVESFPR-----ATLVVCPVSLAAQWHDELR-KMSQQGSINSYV 625
Query: 418 YHGGSRTKDPVELA-----KYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEF 472
++GG R LA + DV++T+Y +T+E K +
Sbjct: 626 WYGGDRVDIEALLAGDGKERVDVIVTSYGTLTSEYQK----------------------W 663
Query: 473 SVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVAR 532
K R +Y G L + R+VLDEA I+N V++
Sbjct: 664 LRTKDRP---------------------NYEGGSLYDHEFLRIVLDEAHNIRNRLAMVSK 702
Query: 533 ACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYK 592
AC L+ +RRW L+GTPI N ++DLYS FL+ P+ Y F S + +P
Sbjct: 703 ACYELKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNYSFFRSFVTVPFLNQDHKALN 762
Query: 593 KLQAVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 651
+Q +L + +LRR K DG+ I++LPPKT+ + + FS+ E YK LE + K+F
Sbjct: 763 VVQYILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKFLEERAKKRFI 822
Query: 652 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
G NY +IL ML++LRQ DHPLLV
Sbjct: 823 DLDADGRAMSNYTSILAMLMKLRQCVDHPLLV 854
>sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1
SV=2
Length = 1162
Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 149/516 (28%), Positives = 232/516 (44%), Gaps = 124/516 (24%)
Query: 210 PSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQA------ALEDLNQPKVE 263
P + KS GG S YR G ++ V ++ +A +LE V
Sbjct: 502 PVGSLELKSACQVTAGGSSQ-CYR-GHTNQDHVHAVWKITSEAIGQLHRSLESCPGETVV 559
Query: 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSL 323
A P GL V LL HQK ALAW+L +E++ GGILADD GLGKT+++IALI L
Sbjct: 560 AEDPAGL-KVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALI-----L 611
Query: 324 QSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRP 383
K++ + +K+ AL DD+ + F+
Sbjct: 612 TQKNQEKKEEKEKSTALTWLSKDDSCD---------------------------FT---- 640
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443
+ GTL++CPAS++ W E+E +V + L V +YHG +R L+ YD+V+TTYS+V
Sbjct: 641 SHGTLIICPASLIHHWKNEVEKRV-NSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLV 699
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503
E+P NK+ +I N +++
Sbjct: 700 AKEIP-------------------------TNKQEAEIPGA------------NLNVEGT 722
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
PL ++ W R++LDEA +KN R Q + A C L+A RW ++GTPIQN++ D+YS +F
Sbjct: 723 STPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKF 782
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF-IDGQPIINLPPK 622
L+ P+ + + S + S G ++L + ++++LRRTK G+P++ LP +
Sbjct: 783 LRCSPFDEFNLWRSQ----VDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQR 838
Query: 623 TISLTKVDFSKEEWAFYKKLESDS-------LKKFKAFAD-------------------- 655
L + S++E Y + S LK+ ++ +
Sbjct: 839 KFQLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSE 898
Query: 656 -------AGTVNQNYANILLMLLRLRQACDHPLLVK 684
A + + +IL LLRLRQ C H L+K
Sbjct: 899 EPRHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLK 934
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3
SV=1
Length = 1202
Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 189/398 (47%), Gaps = 92/398 (23%)
Query: 295 HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLD 354
HCLGGILAD+ GLGKTI +++L+ R+L T+ LGN L
Sbjct: 509 HCLGGILADEMGLGKTIEMLSLVHSHRNL---PPTQSLGN------------------LT 547
Query: 355 KVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALS 414
++ +G + P P TLVV P S+L QW E K ++
Sbjct: 548 RLPVSG----VVPAPYT---------------TLVVAPMSLLAQWEGEAL-KASRNGSMK 587
Query: 415 VLIYHGGSRTKDPVEL------AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGL 468
VL+Y+G + + E+ A +++LT+Y +V +E
Sbjct: 588 VLMYYGNEKNVNLREMCSAGNAAAPNMILTSYGVVMSE---------------------- 625
Query: 469 SSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRT 528
+ G GN+ S V +FRV+LDEA IKN R+
Sbjct: 626 ----------HRTHQALAPGTSWTPGNLFS-----------VDFFRVILDEAHIIKNRRS 664
Query: 529 QVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI-SRNS 587
+ ARAC L+A RW L+GTPI N ++DL+S RFL+ +P+ + + + I P S+
Sbjct: 665 KTARACYDLKATHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWKTFITAPFESKEV 724
Query: 588 LHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS 646
+ +Q VL ++LRRTK +G+P++ LP +TI + KV+ ++E Y + + +
Sbjct: 725 VRAISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPKRTIRIEKVELIEQEREIYNHIYTRA 784
Query: 647 LKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
+ F + AGT+ ++Y+ I LLRLRQ C HP+L +
Sbjct: 785 KQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPILTR 822
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 182 bits (462), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 173/354 (48%), Gaps = 56/354 (15%)
Query: 371 VSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
V S ++ RP TL++CP SVL W + + L+ +Y+G R ++P L
Sbjct: 463 VEGSKKTDVEERPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALL 521
Query: 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKK 490
+K D+VLTTY+I+T++
Sbjct: 522 SKQDIVLTTYNILTHDY------------------------------------------- 538
Query: 491 GKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPI 550
G KG+ PL + W RV+LDE I+N Q +A L ++RRW L+GTPI
Sbjct: 539 GTKGD---------SPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPI 589
Query: 551 QNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF 610
QNS+ DL+S FLK P+ + ++ TI+ P++ G ++LQ++++ I LRRTK +
Sbjct: 590 QNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSK 649
Query: 611 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLML 670
I G+P++ LP + + + + S EE Y+ ++++ + + GTV +YA++L +L
Sbjct: 650 IKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLL 709
Query: 671 LRLRQACDHPLLVKEY---DFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAIC 721
LRLRQ C H L+ + S E+ K+L R M + L S + AIC
Sbjct: 710 LRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAIC 763
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 27/95 (28%)
Query: 250 YQAALEDLNQP-KVEATLPDGLLSVNLLKHQKIALAWMLQKET----------------- 291
+ EDL + K P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYN 273
Query: 292 ---------RSLHCLGGILADDQGLGKTISIIALI 317
R + GGILADD GLGKT++ IA+I
Sbjct: 274 TITNFSEKDRPENVHGGILADDMGLGKTLTAIAVI 308
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5
PE=3 SV=2
Length = 1222
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 206/437 (47%), Gaps = 88/437 (20%)
Query: 295 HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLD 354
HCLGGILAD+ GLGKTI +++LI RS EV
Sbjct: 573 HCLGGILADEMGLGKTIQMLSLIHSHRS-------EVAI--------------------- 604
Query: 355 KVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALS 414
K +E G + + +P + T + + TLVV P S+L QW E E+ +
Sbjct: 605 KAREAGPTS-VNNLPRLPTVSGQKTTIDAPCTTLVVAPMSLLAQWQSEAEN-ASKEGTFK 662
Query: 415 VLIYHGGSRTKDPVELA-------KYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYG 467
++Y+G + D V + DV++T+Y +V +E + + KNG+
Sbjct: 663 TMMYYGAEKNVDLVTMCCEANAANAPDVIITSYGVVLSEFTQLAT--------KNGDRLS 714
Query: 468 LSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHR 527
FS+N +FRV+LDEA IKN +
Sbjct: 715 SRGLFSLN------------------------------------FFRVILDEAHNIKNRQ 738
Query: 528 TQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI-SRN 586
+ +RAC + A+ RW L+GTPI N ++DL+S RFL+ +P+ + + + I +P S+N
Sbjct: 739 AKTSRACYEIAAEHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWRTFITVPFESKN 798
Query: 587 SLHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESD 645
+ +Q VL +++RRTK DGQ ++ LPPK I + ++ S+ E A Y + +
Sbjct: 799 FVRALDVVQTVLEPLVMRRTKDMKTPDGQFLVPLPPKHIEIVDIELSEPERAVYDYVFNR 858
Query: 646 SLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDF---DSVGKISGEMAKRL 702
+ + AGTV + + +I +LRLRQ+C HP+LV+ + + ++ ++A L
Sbjct: 859 AKRTLFDNMQAGTVMKAFTSIFAQILRLRQSCCHPVLVRNQEILADEEEANMAADVAAGL 918
Query: 703 PRDMLIDLLSRLETSSA 719
DM DL + +E +A
Sbjct: 919 ADDM--DLQTLIERFTA 933
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 151/297 (50%), Gaps = 52/297 (17%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + + L+ +Y+G R +DP L+K D+VLTTY+I+T++
Sbjct: 475 TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRDPALLSKQDIVLTTYNILTHD 534
Query: 447 VPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506
G KG+ P
Sbjct: 535 Y-------------------------------------------GTKGD---------SP 542
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W RV+LDE I+N Q +A L A+RRW L+GTPIQNS+ DL+S FLK
Sbjct: 543 LHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLKL 602
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
P+ + ++ TI+ P++ G ++LQ++++ I LRRTK + I G+P++ LP + + +
Sbjct: 603 KPFVDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERPVFI 662
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
+ S EE Y+ ++S+ + + GTV +YA++L +LLRLRQ C H L+
Sbjct: 663 QHITLSDEERKIYQSVKSEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLL 719
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 27/95 (28%)
Query: 250 YQAALEDLNQP-KVEATLPDGLLSVNLLKHQKIALAWMLQKE-TRSL------------- 294
+ EDL + K + P + LL HQK ALAWM+ +E +R L
Sbjct: 214 FDKLFEDLKEDDKTQEMEPAEAVETPLLPHQKQALAWMVSRENSRELPPFWELRNDLYYN 273
Query: 295 ------------HCLGGILADDQGLGKTISIIALI 317
+ GGILADD GLGKT++ IA+I
Sbjct: 274 TITNFSEKDQPENVHGGILADDMGLGKTLTAIAVI 308
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 187/404 (46%), Gaps = 85/404 (21%)
Query: 295 HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLD 354
HCLGGILAD+ GLGKTI +++L+ RS EV + + + ++
Sbjct: 511 HCLGGILADEMGLGKTIQMLSLVHTHRS-------EVALEARQSVV--------ARSNVN 555
Query: 355 KVKETGE-SDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAAL 413
++ G+ S+ I P TLVV P S+L QW E E K +
Sbjct: 556 QLTRLGKNSESILDAP---------------CTTLVVAPMSLLSQWQSEAE-KASKDGTM 599
Query: 414 SVLIYHGGSRTKDPVELA-------KYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETY 466
+Y+G ++ + L D+V+T+Y +V
Sbjct: 600 KTELYYGNEKSSNLQALCCASNAANAPDLVITSYGVVL---------------------- 637
Query: 467 GLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNH 526
SEFS S + G K N L + +FR+++DEA IKN
Sbjct: 638 ---SEFS-----------SLAARNGDKSFHNG--------LFSLRFFRIIIDEAHHIKNR 675
Query: 527 RTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI-SR 585
++ ++AC + A RW L+GTPI N ++DL+S RFL +P+ + + + I +P S
Sbjct: 676 SSKTSKACYEISATHRWALTGTPIVNKLEDLFSLVRFLGVEPWNNFSFWRTFITVPFESG 735
Query: 586 NSLHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 644
+ + +Q VL ++LRRTK DG+P++ LPPK I + V+ S+ E Y + +
Sbjct: 736 DFMRALDVVQTVLEPLVLRRTKDMKTPDGEPLVLLPPKQIEIVNVELSETERDVYNYIFN 795
Query: 645 DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDF 688
+ + F +AGTV + + I +LRLRQ+C HP+LV+ D
Sbjct: 796 KAKRTFSQNVEAGTVMKAFTTIFAQILRLRQSCCHPILVRNRDI 839
>sp|P36607|RAD5_SCHPO DNA repair protein rad5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad8 PE=1 SV=1
Length = 1133
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 197/447 (44%), Gaps = 111/447 (24%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGILAD+ GLGKTI +++LI + + E + K
Sbjct: 524 GGILADEMGLGKTIEVLSLIHSRPCFSTDEIPEAFRHSK--------------------- 562
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLI 417
P + ++R+ TLVV P S+L QW E KV +I
Sbjct: 563 -----------PSLPVASRT---------TLVVAPMSLLDQWHSE-ACKVSQGTKFRSMI 601
Query: 418 YHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYG-LSSEFSVNK 476
Y+G + P++L K +D A +YG L SEFS
Sbjct: 602 YYGSEK---PLDL------------------KSCVIDTSTAPLIIITSYGVLLSEFS--- 637
Query: 477 KRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCS 536
+ G L V WFRVVLDE I+N ++ A+AC S
Sbjct: 638 --------QQSHSSG---------------LFSVHWFRVVLDEGHNIRNRESKTAKACHS 674
Query: 537 LRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI-SRNSLHGYKKLQ 595
+ ++ RW ++GTPI N +DDLYS +F++Y+P+ Y + + + +P S++ L +Q
Sbjct: 675 ISSQNRWVITGTPIVNKLDDLYSLIKFMRYEPWCNYTYWQTFVSLPYQSKDVLKALNVVQ 734
Query: 596 AVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFA 654
++L ++LRRTK T +G I+ LPPKT+ + +DFS E Y L + + A
Sbjct: 735 SILEFLVLRRTKETKDRNGNSIVTLPPKTVKIEYLDFSDSERKIYDSLYTKAKSTVNANI 794
Query: 655 DAGTVNQNYANILLMLLRLRQACDHPLLVK------------EYDFDSVGKISGEMA--- 699
AGT+ +NY IL +LLRLRQAC P+L+ E+ + + +
Sbjct: 795 VAGTLFRNYTTILGLLLRLRQACCDPVLLSNMTINSETFDDFEFSVEQFNSLINQFVVTG 854
Query: 700 KRLPRDML-IDLLSRLE---TSSAICC 722
K +P D+L ID L E T ICC
Sbjct: 855 KPIPSDILKIDTLKSFEALITECPICC 881
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3
SV=1
Length = 1151
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 188/386 (48%), Gaps = 76/386 (19%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGIL+D+ GLGKTIS ++L+ M R + ++ L +Q++ L+ DD
Sbjct: 508 GGILSDEMGLGKTISALSLVLM-RPKDEHTTSQSLFHQESSNLSSDD------------- 553
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLI 417
V E+ RS++ + TL++ P S+L QW E DKV + A L+ +
Sbjct: 554 ----------VIEIKEPERSYAYK----TTLIIVPMSLLTQWRDEF-DKVNNNAGLTCEL 598
Query: 418 YHGGSRTKDPVELAKYD----VVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFS 473
Y+GG+ + L K VVLTTY IV NE K K+G
Sbjct: 599 YYGGNVSSLKSLLIKRKNPPTVVLTTYGIVQNEWTKL---------SKDG---------- 639
Query: 474 VNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARA 533
+N+ G+ + + +FR++LDE TI+N T ++A
Sbjct: 640 --------TNIRSLGR--------------TSGIFSIEFFRIILDEGHTIRNKSTITSKA 677
Query: 534 CCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI-SRNSLHGYK 592
L +K RW L+GTPI N +DDLYS +FLK +P++ + I P RN +
Sbjct: 678 VLELSSKYRWILTGTPIINRLDDLYSLVKFLKLEPWSQIGYWKQFITNPFEERNFKQAFD 737
Query: 593 KLQAVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 651
+ A++ ++LRRTK DG P++ LPPK I + K+ SK++ Y++ + K F+
Sbjct: 738 VVNAIMEPVLLRRTKQMKDTDGNPLVQLPPKEIVIEKLQLSKKQKLIYEEFLQRAEKTFR 797
Query: 652 AFADAGTVNQNYANILLMLLRLRQAC 677
+ +G + + Y+ IL+ +LRLRQ C
Sbjct: 798 SGLQSGDLLKKYSTILVHILRLRQVC 823
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 165/350 (47%), Gaps = 62/350 (17%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
TL++CP SVL W + V + L+ +Y+G R +D L+K D++LT
Sbjct: 471 ATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILT------- 523
Query: 446 EVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGC- 504
TY + + DYG
Sbjct: 524 -------------------TYNILTH-----------------------------DYGTK 535
Query: 505 --GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
PL + W RV+LDE I+N Q +A L A+RRW L+GTPIQNS+ DL+S
Sbjct: 536 DDSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLS 595
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
FLK P+ + +Y I+ P++ G ++LQ++++ I LRRTK + I G+P++ LP +
Sbjct: 596 FLKLKPFIDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPER 655
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ + + S+EE Y+ ++++ + GTV +YA++L +LLRLRQ C H L
Sbjct: 656 KVFIQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHL 715
Query: 683 VKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSA--ICCVCSVSFYF 730
+ S G + + L R MLI+ + + +S + C +C S F
Sbjct: 716 LTN-GMSSSGPSRSDTPEEL-RKMLIEKMKIILSSGSDEECAICLDSLTF 763
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 65/166 (39%), Gaps = 42/166 (25%)
Query: 250 YQAALEDLNQPKVEATL-PDGLLSVNLLKHQKIALAWMLQKET----------------- 291
+ EDL + + P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDRTVEMEPAEAIETPLLPHQKQALAWMIARENSKELPPFWEQRNDLYYN 273
Query: 292 ---------RSLHCLGGILADDQGLGKTISIIALIQMQ----RSLQSK-SKTEVLGNQ-- 335
R + GGILADD GLGKT++ IA+I R L SK K G +
Sbjct: 274 TITNFSVKERPENVHGGILADDMGLGKTLTAIAVILTNFDDGRPLLSKRGKKNHPGKEYK 333
Query: 336 ----KTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRS 377
K N+D +D G + GE I PE S+ T S
Sbjct: 334 DETIKRRGSNMDKKED----GHSESSTCGEEPSISGTPEKSSCTLS 375
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD16 PE=1 SV=1
Length = 790
Score = 169 bits (427), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 160/335 (47%), Gaps = 85/335 (25%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
+LVV P L QW E+E K L + IYHG SRT D +L YDVVLTTY+++ +
Sbjct: 233 SLVVAPTVALMQWKNEIEQHT--KGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESV 290
Query: 447 VPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKG--KKGNVNSSIDYGC 504
KQ YG R K G K+ +V +ID+
Sbjct: 291 FRKQ--------------NYGF------------------RRKNGLFKQPSVLHNIDF-- 316
Query: 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL 564
+RV+LDEA IK+ ++ ARA +L+ ++RWCLSGTP+QN I ++YS RFL
Sbjct: 317 --------YRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFL 368
Query: 565 KYDPYAVY------------------------------KSFYSTI------KIPISRNSL 588
+P+ Y +F++ K + L
Sbjct: 369 NINPFTKYFCTKCDCASKDWKFTDRMHCDHCSHVIMQHTNFFNHFMLKNIQKFGVEGPGL 428
Query: 589 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLK 648
+ +Q +L+ IMLRRTK D + LPP+ +++ + F++EE Y+ L +DS +
Sbjct: 429 ESFNNIQTLLKNIMLRRTKVERADD---LGLPPRIVTVRRDFFNEEEKDLYRSLYTDSKR 485
Query: 649 KFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
K+ +F + G V NYANI ++ R+RQ DHP LV
Sbjct: 486 KYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLV 520
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
PDG+ ++ LL Q L W++ +E S++ GG+LAD+ G+GKTI IAL+
Sbjct: 177 PDGM-TIKLLPFQLEGLHWLISQE-ESIYA-GGVLADEMGMGKTIQTIALL 224
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 184/397 (46%), Gaps = 63/397 (15%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGILAD+ GLGKTI + +L+ R T G + +N D G K
Sbjct: 653 GGILADEMGLGKTIMVASLLHANR-------TSDPGEESEGEINAVD----AAEGDVSTK 701
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRRP--------AAGTLVVCPASVLRQWARELEDKVPD 409
G + + ST S +R+ +LVV P S++ QW EL +
Sbjct: 702 RKGSAKQTSLASAFAASTSSVDQRKALLKASVSKGKASLVVAPMSLIGQWRDELI-RASA 760
Query: 410 KAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYG 467
+L+ ++Y+ ++ +E K DVV+T+Y + E
Sbjct: 761 PGSLTPVLYYADTKGDLLAQLESGKVDVVITSYGTLVTEY-------------------- 800
Query: 468 LSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHR 527
R+ + G N + S+ PL + W RV+LDEA IKN
Sbjct: 801 ----------RRFLDG-------GGASNRHLSV---SAPLYCIDWLRVILDEAHNIKNRS 840
Query: 528 TQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNS 587
T ARACC L ++RRW L+GTPI N + DL+S +FL+ +P+ + F S + P S
Sbjct: 841 TMNARACCDLVSRRRWALTGTPIINRLTDLFSLLKFLRVEPWGDFSFFNSFVCKPFQAKS 900
Query: 588 LHGYKKLQAVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS 646
+Q +L +++LRR K DG+PI+ LPPKTI + +++FS+ E Y + +
Sbjct: 901 TKALDVVQVILESVLLRREKKMKDKDGKPIVELPPKTIVVKELEFSELERRIYDNVYRRA 960
Query: 647 LKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
+F + GTV +N + I +L+RLRQA HP LV
Sbjct: 961 YLQFASLKANGTVTRNLSVIFSVLMRLRQAVCHPSLV 997
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 180/396 (45%), Gaps = 82/396 (20%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGILAD+ GLGKTISI+ALI M + S +K + Q+ + G+ L
Sbjct: 455 GGILADEMGLGKTISILALITM---VPSDTKHLLTTAQEKPPV--------GHLSL---- 499
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLI 417
E G S +KP A+ TL+V P S+L QW E +V D L +
Sbjct: 500 ELGIST-VKPYT--------------ASTTLIVVPMSLLPQWRNEFV-RVNDGNGLYCEV 543
Query: 418 YHGGSRTKDPVELAKY----DVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFS 473
Y+ G+ + L K VVLTTY +V E K D E ++E GL S
Sbjct: 544 YYAGNVSNLRTLLVKQKSPPSVVLTTYGVVQTEWSKLQQFDYEASNE------GLFS--- 594
Query: 474 VNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARA 533
V +FR++LDE I+N T+ ++A
Sbjct: 595 ------------------------------------VEFFRIILDEGHNIRNRTTKTSKA 618
Query: 534 CCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL-HGYK 592
+L ++R+W L+GTPI N +DDL+S +F+ ++P+ + + P + +
Sbjct: 619 VMALTSRRKWVLTGTPIMNRLDDLFSLIKFMNFEPWCKIDYWRQFVSDPFEKKDYSSALE 678
Query: 593 KLQAVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 651
+QAV+ I+LRRTK DG P++ LPPK + + + FS E YK S + K
Sbjct: 679 VIQAVMGPILLRRTKNMKDEDGNPLVQLPPKEVVIEMIRFSDTEAGLYKYFLSKAEHSVK 738
Query: 652 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 687
G + + Y+ ILL +LRLRQ C H L+ D
Sbjct: 739 ESLARGDLLKKYSTILLHILRLRQVCCHFKLLGSQD 774
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 178/397 (44%), Gaps = 88/397 (22%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGILAD+ GLGKTIS +ALI S + ++ +K +K
Sbjct: 479 GGILADEMGLGKTISALALI-CTASYDEAHEKKIESTKKP-----------------SMK 520
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLI 417
E D P+ +++ R TL+V P S+L QW E E D +
Sbjct: 521 EMSSQVDSSPLRHSQHKHDTYAYR----TTLIVVPMSLLNQWQSEFEKANKDLKKRCEIY 576
Query: 418 YHGGSRTKDPVELAKY-------DVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSS 470
Y G+ KD L Y V++TTY I+ +E YG +S
Sbjct: 577 Y--GNNIKD---LRAYVLGPNAPSVIITTYGIIQSE-------------------YGRTS 612
Query: 471 EFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQV 530
L V +FR++LDE TI+N T+
Sbjct: 613 ---------------------------------TSGLFNVVFFRIILDEGHTIRNRSTRT 639
Query: 531 ARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISR-NSLH 589
++A +LR+ R+W L+GTPI N +DDL+S +FL +P++ + + +P + N
Sbjct: 640 SKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQ 699
Query: 590 GYKKLQAVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLK 648
+ + AVL ++LRRTK +DG+P+++LPPK + + K+ S E Y+ + D+
Sbjct: 700 AFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAEN 759
Query: 649 KFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE 685
K G + +NY NIL+ +LRLRQ C H L+K+
Sbjct: 760 SVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKK 796
>sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rhp16 PE=3 SV=2
Length = 861
Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 164/359 (45%), Gaps = 90/359 (25%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TLVV P + QW E++ ALS +Y+G +R EL+ YDVVLT+Y+++
Sbjct: 304 TLVVAPVVAIMQWKEEIDTHT--NKALSTYLYYGQARDISGEELSSYDVVLTSYNVIE-- 359
Query: 447 VPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506
SV +K + G + K G V
Sbjct: 360 --------------------------SVYRKERS-------GFRRKNGVVKEK-----SL 381
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L ++ ++R++LDEA IK+ ARA C LR R+ CLSGTP+QN I +L+S RFL+
Sbjct: 382 LHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRA 441
Query: 567 DPYAVYKS-------------------------------FYSTIKIPISRNSLHG----- 590
DP+A Y F + + PI + G
Sbjct: 442 DPFAYYYCLQCECKSLHWRFSDRSNCDECGHKPMSHTCYFNAEMLKPIQKFGYEGPGKLA 501
Query: 591 YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 650
+KK+ ++L+ IMLRRTK D + LPP+ + + K F++EE Y+ L DS +KF
Sbjct: 502 FKKVHSLLKHIMLRRTKLERADD---LGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKF 558
Query: 651 KAFADAGTVNQNYANILLMLLRLRQACDHPLLV-----KEYDFDS----VGKISGEMAK 700
+ G V NYANI ++ R+RQ DHP LV K D ++ V KI E+A+
Sbjct: 559 NTYLAEGVVLNNYANIFQLITRMRQMADHPDLVLASKRKTVDIENQENIVCKICDEVAQ 617
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +NLL Q+ + W+ ++E S GGILAD+ G+GKTI IAL+
Sbjct: 251 LVLNLLPFQREGVYWLKRQEDSSFG--GGILADEMGMGKTIQTIALL 295
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 186/401 (46%), Gaps = 86/401 (21%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGIL+D+ GLGKT++ +L+ L+ D D + L ++
Sbjct: 527 GGILSDEMGLGKTVAAYSLV----------------------LSCPHDSDVVDKKLFDIE 564
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAG--TLVVCPASVLRQWARELEDKVPDKAALSV 415
T SD++ + ++P A TL+V P S+L QW+ E K + +
Sbjct: 565 NTAVSDNLPSTWQ--------DNKKPYASKTTLIVVPMSLLTQWSNEF-TKANNSPDMYH 615
Query: 416 LIYHGGS----RTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSE 471
+Y+GG+ +T VVLTTY IV NE K
Sbjct: 616 EVYYGGNVSSLKTLLTKTKTPPTVVLTTYGIVQNEWTKH--------------------- 654
Query: 472 FSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVA 531
KG+ + + +I G L V ++R+++DE I+N T +
Sbjct: 655 -----------------SKGRMTDEDVNISSG---LFSVNFYRIIIDEGHNIRNRTTVTS 694
Query: 532 RACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA---VYKSFYSTIKIPI-SRNS 587
+A +L+ K +W L+GTPI N +DDLYS +FL+ DP+ +K+F ST P S+N
Sbjct: 695 KAVMALQGKCKWVLTGTPIINRLDDLYSLVKFLELDPWRQINYWKTFVST---PFESKNY 751
Query: 588 LHGYKKLQAVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS 646
+ + A+L ++LRRTK DG+P++ LPPK + + ++ FSK + YK L +
Sbjct: 752 KQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYKFLLDKA 811
Query: 647 LKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 687
K+ G + + Y+ IL+ +LRLRQ C HP L+ D
Sbjct: 812 EVSVKSGIARGDLLKKYSTILVHILRLRQVCCHPGLIGSQD 852
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5
PE=3 SV=2
Length = 1190
Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 177/394 (44%), Gaps = 95/394 (24%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357
GGILAD+ GLGKTIS +ALI + +D +
Sbjct: 539 GGILADEMGLGKTISTLALI-------------------------------NSVPIDVMF 567
Query: 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLI 417
E + + K + T TL++ P S+L QW +E DK + + I
Sbjct: 568 EENKELEDKTIYASKT-------------TLIIVPMSLLSQWQKEF-DKANNNSNHKCFI 613
Query: 418 YHGGSRTKD--PVELAKYD----VVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSE 471
Y+G S T D PV K V++TTY V NE
Sbjct: 614 YYGDSATTDLSPVLCNKKKDIPIVMITTYGTVLNEF------------------------ 649
Query: 472 FSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVA 531
+ISN +R KG + L V +FR+VLDE I+N + +
Sbjct: 650 -------TRISN--RRDAKGFLPKIG---------LFSVKFFRIVLDEGHNIRNRTAKTS 691
Query: 532 RACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL-HG 590
+A + + R+W L+GTP+ N +DDLYS +FL+ +P++ + + + + +P + +
Sbjct: 692 KAIYEILSNRKWVLTGTPVINRLDDLYSLVKFLELEPWSNFSYWKTFVTLPFEQRKISQT 751
Query: 591 YKKLQAVLRAIMLRRTKGT-FIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKK 649
++++L I +RRTK +G+P++ LPPK + + +V F++ E Y ++ + +
Sbjct: 752 LDVVKSILEPIFIRRTKNMKQSNGKPLVELPPKEVVIEEVKFNEVEEKLYNWFKARASQS 811
Query: 650 FKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
FK +G + + Y+ IL +LRLRQ C H LV
Sbjct: 812 FKDGIKSGDLFKKYSQILTHILRLRQVCCHVDLV 845
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 122/434 (28%), Positives = 186/434 (42%), Gaps = 64/434 (14%)
Query: 255 EDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISII 314
ED+ QP+ E +G + L ++QK L WM+ +ET DD G I
Sbjct: 351 EDVEQPETEV---EGF-PLELRRYQKQGLTWMISRETEVSEYFDN---DDSG-----PIN 398
Query: 315 ALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTS 374
L S K V + L + + + G+ +D++ +ST
Sbjct: 399 PLWTKVDFPGSDEKFYVNFSSGALTLKFPKQERSFSGGI-------LADEMGLGKTISTL 451
Query: 375 TRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY- 433
+ R R TLVV P S+L QW +E E + LS +YH D EL K
Sbjct: 452 AMVY-RDRHVGCTLVVAPMSLLWQWEQECE-----RVGLSTYVYHEKGADIDLDELFKTY 505
Query: 434 --DVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKG 491
++++T+Y + + YG R IS S +
Sbjct: 506 SPNILITSYHTLVSH-------------------YGQIKALGGGLDRNVISETSSHERPK 546
Query: 492 KKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQ 551
+ + R+VLDEA IKN T A+ACC LRA +W L+GTPI
Sbjct: 547 ---------------IFTKHFHRIVLDEAHVIKNRNTVSAKACCLLRATNKWALTGTPIH 591
Query: 552 NSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL-HGYKKLQAVLRAIMLRRTKGT- 609
N ++DL+S +FL P+ + + + I +P + +Q +L I+LRRTK
Sbjct: 592 NRLEDLFSILKFLGAAPWNDFIYWRNFITLPFQEGKIVSALMTVQCILEPIVLRRTKNMK 651
Query: 610 FIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669
DG P++ LP KTI++ KV + +E Y + + + + + V +NY NIL
Sbjct: 652 QADGSPLVVLPKKTINIEKVALTDQERVIYSYVLARAQTSLQKSEASEAVGRNYLNILTQ 711
Query: 670 LLRLRQACDHPLLV 683
+LRLRQ+C P L+
Sbjct: 712 ILRLRQSCCDPALI 725
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 133 bits (334), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 51/311 (16%)
Query: 382 RPAAG--TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD----- 434
RP A TL+V P S+L QW E E + + L Y T L D
Sbjct: 492 RPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVCRLHYGEDQETNLAWSLCNPDNSKIP 551
Query: 435 -VVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKK 493
V++TTY V NE F+ KR R KG+
Sbjct: 552 IVMITTYGTVLNE-------------------------FTRLSKR--------RNSKGEL 578
Query: 494 GNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNS 553
V L V +FR++LDE I+N T+ A++ L++ R+W L+GTPI N
Sbjct: 579 PKVG---------LYSVKFFRIILDEGHNIRNRNTKTAKSVYELQSSRKWILTGTPIVNR 629
Query: 554 IDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL-HGYKKLQAVLRAIMLRRTKGTFID 612
+DDLYS +FL+ DP+ + + + + +P + + ++++L I LRRTK +
Sbjct: 630 LDDLYSLTKFLELDPWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQKKN 689
Query: 613 GQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLR 672
G+P++ LP K + + ++ F+ +E Y+ + + F +G + + Y IL +LR
Sbjct: 690 GKPLVELPAKEVVIEQIKFNDDEEKLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILR 749
Query: 673 LRQACDHPLLV 683
LRQ C H L+
Sbjct: 750 LRQVCCHVDLI 760
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILAD+ GLGKTI+ +AL+
Sbjct: 458 GGILADEMGLGKTIATLALV 477
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1
SV=1
Length = 1674
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 142/311 (45%), Gaps = 51/311 (16%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIV 443
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 708 ATLIISPSSICHQWVDEINRHV-RSSSLRVLVYQGVKKHGFLQPHFLAEQDIVIITYDVL 766
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503
+E+ V+ ++ ++G +R + K+ S
Sbjct: 767 RSELN---YVNIPHSNSEDG----------------------RRLRNQKRYMAIPS---- 797
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+ F
Sbjct: 798 --PLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVF 855
Query: 564 LKYDPYAVYKSFYSTIKIP-ISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
L +PY V + + P +N H Y + + IM R K ID I +PP+
Sbjct: 856 LGIEPYCVKHWWIRLLYHPYCKKNPQHLY----SFIAKIMWRSAKKDVIDQ---IQIPPQ 908
Query: 623 TISLTKVDFSKEEWAFYKKLES----DSLKKFKAFAD-----AGTVNQNYANILLMLLRL 673
T + + FS E FY + D++ K + +D + + ++IL LLRL
Sbjct: 909 TEEMHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSSLDRRTVSSILYPLLRL 968
Query: 674 RQACDHPLLVK 684
RQAC HP V+
Sbjct: 969 RQACCHPQAVR 979
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 362 LGGILADEMGLGKTVEVLALI 382
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1
SV=2
Length = 1683
Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 147/334 (44%), Gaps = 57/334 (17%)
Query: 365 IKP--VPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS 422
IKP P + S R TL++ P+S+ QW E+ V ++L VL+Y G
Sbjct: 698 IKPFYCPHCLVAMEPVSTR----ATLIISPSSICHQWVDEINRHV-RSSSLRVLVYQGVK 752
Query: 423 RTK--DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
+ P LA+ D+V+ TY ++ +E+ VD ++ ++G
Sbjct: 753 KDGFLQPHFLAEQDIVIITYDVLRSELN---YVDIPHSNSEDG----------------- 792
Query: 481 ISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK 540
+R + K+ S PL V W+R+ LDEAQ ++ + A L
Sbjct: 793 -----RRLRNQKRYMAIPS------PLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGI 841
Query: 541 RRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIP-ISRNSLHGYKKLQAVLR 599
RWC+SGTP+Q ++DL+ FL +PY V + + P +N H Y + +
Sbjct: 842 NRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLY----SFIA 897
Query: 600 AIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES----DSLKKFKAFAD 655
I+ R K ID I +PP+T + + FS E FY + D + K + +D
Sbjct: 898 KILWRSAKKDVIDQ---IQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISD 954
Query: 656 -----AGTVNQNYANILLMLLRLRQACDHPLLVK 684
+ + +IL LLRLRQAC HP V+
Sbjct: 955 WALKLSSLDRRTVTSILYPLLRLRQACCHPQAVR 988
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 367 LGGILADEMGLGKTVEVLALI 387
>sp|P41447|GTA_NPVAC Probable global transactivator OS=Autographa californica nuclear
polyhedrosis virus GN=GTA PE=3 SV=1
Length = 506
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 137/302 (45%), Gaps = 72/302 (23%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL+VCP S++ W E +K D ++L Y+ S D VE Y +V+TTY +
Sbjct: 81 TLIVCPLSLINHWVTE--NKKHD-LNFNILKYYK-SLDADTVE--HYHIVVTTYDV---- 130
Query: 447 VPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506
L + F + K+ K+ S S R
Sbjct: 131 ---------------------LLAHFKLIKQNKQSSLFSTR------------------- 150
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
W RVVLDEA IKN +T V A C+L A RWC++GTPI N D+YS FL+
Sbjct: 151 -----WHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQC 205
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
P+ + + K S N +++++++ I+L+R K N+P T+
Sbjct: 206 RPFNNPRVWKMLNKNNDSTN------RIKSIIKKIVLKRDKSEISS-----NIPKHTVEY 254
Query: 627 TKVDFSKEEWAFYKKLESDSLKKF-KAFADAGTVN-----QNYANILLMLLRLRQACDHP 680
V+F++EE Y KL+ +S + + KA A N Q ++L ++L+LRQ C HP
Sbjct: 255 VHVNFNEEEKTLYDKLKCESEEAYVKAVAARENENALSRLQQMQHVLWLILKLRQICCHP 314
Query: 681 LL 682
L
Sbjct: 315 YL 316
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 256 DLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIA 315
D + P E P NLL HQK + WM+ +E ++ GG+LADD GLGKT+S++
Sbjct: 17 DNDDPNFEHQTP------NLLAHQKKGIQWMINRE-KNGRPNGGVLADDMGLGKTLSVLM 69
Query: 316 LIQMQRSLQSKS 327
LI SLQ K+
Sbjct: 70 LIAKNNSLQLKT 81
>sp|P94593|YWQA_BACSU Uncharacterized ATP-dependent helicase YwqA OS=Bacillus subtilis
(strain 168) GN=ywqA PE=3 SV=2
Length = 922
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 119/454 (26%), Positives = 175/454 (38%), Gaps = 140/454 (30%)
Query: 278 HQKIALAWML-QKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQK 336
+QK + W+L +E+ G LADD GLGKTI +IA
Sbjct: 453 YQKYGMNWLLFLRES----GFGACLADDMGLGKTIQMIAYFL------------------ 490
Query: 337 TEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL 396
VKE+G R L++ P SVL
Sbjct: 491 ------------------HVKESG---------------------RQKTPHLIIAPTSVL 511
Query: 397 RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY---DVVLTTYSIVTNEVPKQPSV 453
W REL+ PD LSV +++G R K A Y DVVLT+
Sbjct: 512 GNWQRELQTFAPD---LSVALHYGPRRPKGDDFAAHYENADVVLTS-------------- 554
Query: 454 DEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWF 513
YGLS L+ V W
Sbjct: 555 ------------YGLSHA-------------------------------DTEELSSVTWN 571
Query: 514 RVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYK 573
+ LDEAQ IKN T+ +RA L+ LSGTP++N + +L+S F F+
Sbjct: 572 TICLDEAQNIKNAHTKQSRAIRKLKGLHHIALSGTPMENRLTELWSIFDFMNKGYLGSLT 631
Query: 574 SFYSTIKIPISRNSLHG-YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFS 632
F+ +PI ++ +LQ ++R +LRRTK D + +NLP K + S
Sbjct: 632 GFHKRYVLPIEKDRDEKRIGQLQQLIRPFLLRRTKR---DEEVALNLPEKLEEKEFIPLS 688
Query: 633 KEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP-LLVKEYDFDSV 691
E+ + Y++L D+ + T Q A IL ML RL+Q CDHP L +KE + +
Sbjct: 689 AEQASLYEQLVKDTFDHMTSL----TGMQRKALILSMLGRLKQICDHPALYLKEEQTELL 744
Query: 692 GKISGEMAKRLPRDMLIDLLSRLETSSAICCVCS 725
S ++ K L++L++ + + C + +
Sbjct: 745 AGRSVKLEK------LLELMTAIRAQNESCLIFT 772
>sp|O10302|GTA_NPVOP Probable global transactivator OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=GTA PE=3 SV=1
Length = 498
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 132/304 (43%), Gaps = 72/304 (23%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443
A TL+VCP S+L W E + L++ +HGG + + AK V TY
Sbjct: 77 AHKTLIVCPLSLLNHWTAEAKKH---NLPLNLRQFHGGD-LDESFDDAK--AVAITY--- 127
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503
D A K+ +T G +S
Sbjct: 128 ----------DTLRAHHKHYKTAGRAS--------------------------------- 144
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
G LA+ W RVVLDEA IKNH+T V A C+L A RWC++GTPI N D+Y+ F
Sbjct: 145 -GLLAR-HWHRVVLDEAHVIKNHQTGVHAAACALSADNRWCITGTPIHNRHWDMYAIIHF 202
Query: 564 LKYDPY---AVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLP 620
L+ P+ V++ ++RN+ ++++V+ I+L+R K + +++P
Sbjct: 203 LRCRPFDNVGVWRM--------LNRNN--DTNRIKSVVNKIVLKRNK-----AEIALDIP 247
Query: 621 PKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP 680
+ V F + E Y +L+S S + + + ++L +L RLRQ C HP
Sbjct: 248 QHDVQDVHVRFDEAEARVYNELKSASQRAYDDAVASADKAGGMQDVLWLLCRLRQVCCHP 307
Query: 681 LLVK 684
L K
Sbjct: 308 ALTK 311
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 274 NLLKHQKIALAWMLQKETRSL-HCLGGILADDQGLGKTISIIALI 317
NLL+HQK + WM ++E R H GG+LADD GLGKT+S++ LI
Sbjct: 28 NLLEHQKRGIEWMRRRERRGRPH--GGVLADDMGLGKTLSVMRLI 70
>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mot1 PE=1 SV=4
Length = 1953
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 122/470 (25%), Positives = 174/470 (37%), Gaps = 145/470 (30%)
Query: 257 LNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316
LN KVEA +S +L K+Q+ + W+ LH GIL DD GLGKT+ I +
Sbjct: 1340 LNPSKVEAFSIPVPISADLRKYQQEGVNWLAFLNKYELH---GILCDDMGLGKTLQTICI 1396
Query: 317 IQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTR 376
+ D+ N K+ E S VP
Sbjct: 1397 VA---------------------------SDHYNR--QKLFEESGSPKFAHVP------- 1420
Query: 377 SFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHG--GSRTKDPVELAKYD 434
+L+VCP+++ W +EL P L V Y G R K ++ K D
Sbjct: 1421 ----------SLIVCPSTLAGHWQQELSTYAP---FLKVSAYVGPPAERAKIRSKMKKSD 1467
Query: 435 VVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKG 494
VV+T+Y I N+ VDE
Sbjct: 1468 VVVTSYDICRND------VDE--------------------------------------- 1482
Query: 495 NVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSI 554
L K+ W VLDE IKN R ++ +A SLR+ R LSGTPIQN++
Sbjct: 1483 ------------LVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNV 1530
Query: 555 DDLYSYFRFLKYDPYAVYKSFYSTIKIPI---------SRNSLHGYKKLQAVLRAI---M 602
+L+S F FL K+F PI S+ G L+A+ + + M
Sbjct: 1531 LELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFM 1590
Query: 603 LRRTKGTFIDGQPIINLPPKTISLTKVDFSK----------EEWAFYKKLESDSLKKFKA 652
LRR K + +LPPK I D S + ++LE D +K +
Sbjct: 1591 LRRLKEDV-----LADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQ- 1644
Query: 653 FADAGTVNQ--NYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAK 700
GT + A+I L +R+ C+HP L+ I ++AK
Sbjct: 1645 ----GTRKKKSQKAHIFQALQYMRKLCNHPALILTEKHPKRNAIVKQLAK 1690
>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6
PE=1 SV=4
Length = 2715
Score = 89.7 bits (221), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 12/180 (6%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L K+ W V++DEA +KN ++ + + + L+GTP+QNS+++L+S F
Sbjct: 584 CPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNF 643
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + KKLQ++L+ +MLRR K NL PK
Sbjct: 644 LEPSQFPSETAFLEEFG---DLKTEEQVKKLQSILKPMMLRRLKDDVEK-----NLAPKQ 695
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L+
Sbjct: 696 ETIIEVELTNIQKKYYRAI----LEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
>sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9
PE=1 SV=2
Length = 2897
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
GCG L + W V++DEA +KN ++ + + + L+GTP+QN++++L+S
Sbjct: 982 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1041
Query: 563 F---LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINL 619
F L++ + + + +K + +KLQA+L+ +MLRR K L
Sbjct: 1042 FLEPLRFPSESTFMQEFGDLK------TEEQVQKLQAILKPMMLRRLKEDVEK-----KL 1090
Query: 620 PPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDH 679
PK ++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+H
Sbjct: 1091 APKEETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNH 1146
Query: 680 PLLVK 684
P L+K
Sbjct: 1147 PYLIK 1151
>sp|Q8BYH8|CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9
PE=1 SV=2
Length = 2885
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
GCG L + W V++DEA +KN ++ + + + L+GTP+QN++++L+S
Sbjct: 981 GCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1040
Query: 563 F---LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINL 619
F L++ + + + +K + +KLQA+L+ +MLRR K L
Sbjct: 1041 FLEPLRFPSESTFMQEFGDLK------TEEQVQKLQAILKPMMLRRLKEDVEK-----KL 1089
Query: 620 PPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDH 679
PK ++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+H
Sbjct: 1090 APKEETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNH 1145
Query: 680 PLLVK 684
P L+K
Sbjct: 1146 PYLIK 1150
>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7
PE=2 SV=1
Length = 3011
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1092 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 1151
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + +KLQA+L+ +MLRR K NL PK
Sbjct: 1152 LEPGRFPSETTFMQEFG---DLKTEEQVQKLQAILKPMMLRRLKEDVEK-----NLAPKE 1203
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K AF G N N+L ++ LR+ C+HP L+
Sbjct: 1204 ETIIEVELTNIQKKYYRAI----LEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1259
>sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7
PE=1 SV=1
Length = 2986
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1081 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 1140
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + +KLQA+L+ +MLRR K NL PK
Sbjct: 1141 LEPSRFPSETTFMQEFG---DLKTEEQVQKLQAILKPMMLRRLKEDVEK-----NLAPKE 1192
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K F G N N+L ++ LR+ C+HP L+
Sbjct: 1193 ETIIEVELTNIQKKYYRAI----LEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1248
>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7
PE=1 SV=3
Length = 2997
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1091 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 1150
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + +KLQA+L+ +MLRR K NL PK
Sbjct: 1151 LEPSRFPSETTFMQEFG---DLKTEEQVQKLQAILKPMMLRRLKEDVEK-----NLAPKE 1202
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K F G N N+L ++ LR+ C+HP L+
Sbjct: 1203 ETIIEVELTNIQKKYYRAI----LEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1258
>sp|Q09XV5|CHD8_MOUSE Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8
PE=1 SV=1
Length = 2582
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 936 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 995
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + +KLQA+L+ +MLRR K NL PK
Sbjct: 996 LEPSQFPSESEFLKDFG---DLKTEEQVQKLQAILKPMMLRRLKEDVEK-----NLAPKQ 1047
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 1048 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1103
>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8
PE=1 SV=5
Length = 2581
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 934 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 993
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + +KLQA+L+ +MLRR K NL PK
Sbjct: 994 LEPSQFPSESEFLKDFG---DLKTEEQVQKLQAILKPMMLRRLKEDVEK-----NLAPKQ 1045
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 1046 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
>sp|Q9JIX5|CHD8_RAT Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus
GN=Chd8 PE=1 SV=2
Length = 2581
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 934 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 993
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + +KLQA+L+ +MLRR K NL PK
Sbjct: 994 LEPSQFPSESEFLKDFG---DLKTEEQVQKLQAILKPMMLRRLKEDVEK-----NLAPKQ 1045
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 1046 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
>sp|B0R0I6|CHD8_DANRE Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8
PE=3 SV=2
Length = 2511
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 11/180 (6%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W VV+DEA +KN ++ + L + + L+GTP+QN++++L+S F
Sbjct: 970 CPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELFSLLHF 1029
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + +KLQ++L+ +MLRR K NL PK
Sbjct: 1030 LEPAQFPSEIEFLREFG---DLKTEEQVQKLQSILKPMMLRRLKEDVEK-----NLAPKQ 1081
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + + F + T N N N+L ++ LR+ C+HP L+
Sbjct: 1082 ETIIEVELTDVQKKYYRAILE---RNFSFLSMGATQNSNVPNLLNTMMELRKCCNHPYLI 1138
>sp|B5DE69|CHD8_XENTR Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis
GN=chd8 PE=2 SV=2
Length = 2184
Score = 86.3 bits (212), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 878 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 937
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ ++ F + +KLQA+L+ +MLRR K NL PK
Sbjct: 938 LEPTQFSSEAEFLKDFG---DLKTEEQVQKLQAILKPMMLRRLKEDVEK-----NLAPKQ 989
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N+L ++ LR+ C+HP L+
Sbjct: 990 ETIIEVELTNIQKKYYRAI----LEKNFSFLTKGASQSNTPNLLNTMMELRKCCNHPYLI 1045
>sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4
Length = 2395
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 511 GWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA 570
W ++LDEAQ IKN ++Q +A ++RA+RR L+GTP+QNS+ +L+S FL ++
Sbjct: 679 AWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFS 738
Query: 571 VYKSFYSTIKIPISRNSLHG--------YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
+ F P++ + G +L VLR +LRR K ++ Q LP K
Sbjct: 739 SHDDFKDWFSNPLT-GMMEGNMEFNAPLIGRLHKVLRPFILRRLKKE-VEKQ----LPEK 792
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
T + SK + Y S + K +G N ++L ++++LR+ C+HP L
Sbjct: 793 TEHIVNCSLSKRQRYLYDDFMSR--RSTKENLKSG----NMMSVLNIVMQLRKCCNHPNL 846
Query: 683 VK 684
+
Sbjct: 847 FE 848
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 234 SGSADER----AVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQK 289
S +DER A +E L +Q L +V+ +P L+ L ++Q + L WM+
Sbjct: 514 SQDSDERQQELANIAEEALKFQPKGYTLETTQVKTPVP-FLIRGQLREYQMVGLDWMVTL 572
Query: 290 ETRSLHCLGGILADDQGLGKTISIIALI 317
++L+ GILAD+ GLGKTI I+L+
Sbjct: 573 YEKNLN---GILADEMGLGKTIQTISLL 597
>sp|P40352|RAD26_YEAST DNA repair and recombination protein RAD26 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1
SV=1
Length = 1085
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 133/319 (41%), Gaps = 56/319 (17%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHG---GSRTKDPVELAKYDVVLTTYSIV 443
L+VCPA+V++QW E + P L +I H G + ++ + D+ +++
Sbjct: 349 VLIVCPATVMKQWCNEFQHWWP---PLRTVILHSMGSGMASDQKFKMDENDL----ENLI 401
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503
N P S ++ + + + L S + ++K K+ G++ + G
Sbjct: 402 MNSKPSDFSYEDWKNSTRTKK--ALESSYHLDKLIDKVVT---------DGHILITTYVG 450
Query: 504 C----GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYS 559
L KV W VLDE I+N ++++ C L+ R LSGTPIQN++ +L+S
Sbjct: 451 LRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWS 510
Query: 560 YFRFLKYDPYAVYKSFYSTIKIPIS----RNSLH-----GYK---KLQAVLRAIMLRRTK 607
F F+ F IPI+ N+ + GYK L+ ++ +LRR K
Sbjct: 511 LFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVK 570
Query: 608 GTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYA 664
P K+E + KL K+ F + +NQ
Sbjct: 571 ADVAKDLP----------------QKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKR 614
Query: 665 NILLMLLRLRQACDHPLLV 683
N+L + LR+ C+HP L+
Sbjct: 615 NVLFGIDILRKICNHPDLL 633
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+P + S+ L +QK + W+ E +C GGI+ D+ GLGKTI +IA I
Sbjct: 289 IPGEIYSL-LFNYQKTCVQWLY--ELYQQNC-GGIIGDEMGLGKTIQVIAFI 336
>sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis
thaliana GN=At3g06400 PE=2 SV=3
Length = 1055
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 12/178 (6%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +++DEA IKN + +++ R ++GTP+QN++ +L++ FL
Sbjct: 306 LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLP 365
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ ++ ++F +I + ++L VLR +LRR K G LPPK ++
Sbjct: 366 EIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG-----LPPKKETI 420
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
KV S+ + +YK L L+K +AG + NI ++LR+ C+HP L +
Sbjct: 421 LKVGMSQMQKQYYKAL----LQKDLEAVNAGGERKRLLNI---AMQLRKCCNHPYLFQ 471
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 271,674,771
Number of Sequences: 539616
Number of extensions: 11576522
Number of successful extensions: 25406
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 24452
Number of HSP's gapped (non-prelim): 824
length of query: 743
length of database: 191,569,459
effective HSP length: 125
effective length of query: 618
effective length of database: 124,117,459
effective search space: 76704589662
effective search space used: 76704589662
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)