Query 004604
Match_columns 743
No_of_seqs 441 out of 2485
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385 Chromatin remodeling c 100.0 2.3E-65 5E-70 569.6 23.2 343 265-743 158-506 (971)
2 KOG1002 Nucleotide excision re 100.0 8.1E-63 1.7E-67 526.3 19.6 313 264-685 175-523 (791)
3 KOG0387 Transcription-coupled 100.0 4.7E-61 1E-65 538.0 22.0 341 264-743 196-565 (923)
4 KOG4439 RNA polymerase II tran 100.0 7.3E-61 1.6E-65 529.3 19.8 316 265-685 317-669 (901)
5 KOG0392 SNF2 family DNA-depend 100.0 1.9E-59 4.2E-64 540.3 16.5 365 250-741 950-1357(1549)
6 PLN03142 Probable chromatin-re 100.0 1.5E-56 3.2E-61 536.1 28.0 337 266-741 162-504 (1033)
7 KOG0384 Chromodomain-helicase 100.0 1.4E-57 3.1E-62 527.6 15.0 337 265-742 361-717 (1373)
8 KOG0389 SNF2 family DNA-depend 100.0 2.5E-57 5.4E-62 507.3 15.7 290 272-689 397-701 (941)
9 KOG0391 SNF2 family DNA-depend 100.0 7.4E-57 1.6E-61 512.7 16.3 286 269-685 610-907 (1958)
10 KOG0386 Chromatin remodeling c 100.0 1.1E-54 2.3E-59 495.8 7.3 344 264-743 384-745 (1157)
11 KOG0388 SNF2 family DNA-depend 100.0 2.2E-52 4.7E-57 459.9 13.1 280 269-688 562-859 (1185)
12 KOG1001 Helicase-like transcri 100.0 3E-50 6.4E-55 465.3 27.9 356 246-726 106-462 (674)
13 PF00176 SNF2_N: SNF2 family N 100.0 4.5E-50 9.8E-55 427.2 20.1 291 278-683 1-299 (299)
14 KOG0390 DNA repair protein, SN 100.0 5.9E-44 1.3E-48 410.9 25.0 291 267-684 231-544 (776)
15 KOG1015 Transcription regulato 100.0 6E-43 1.3E-47 394.0 17.7 304 271-683 665-997 (1567)
16 COG0553 HepA Superfamily II DN 100.0 6.9E-42 1.5E-46 415.2 20.2 345 270-741 334-728 (866)
17 KOG1016 Predicted DNA helicase 100.0 6.1E-40 1.3E-44 363.7 13.1 314 272-685 252-609 (1387)
18 KOG0383 Predicted helicase [Ge 100.0 7.5E-38 1.6E-42 357.8 2.8 351 273-743 294-650 (696)
19 KOG0298 DEAD box-containing he 100.0 2.1E-35 4.5E-40 345.1 12.6 371 272-686 243-694 (1394)
20 PRK04914 ATP-dependent helicas 100.0 2.7E-31 5.8E-36 318.2 27.8 242 272-640 150-448 (956)
21 KOG1000 Chromatin remodeling p 100.0 2E-32 4.3E-37 294.4 13.3 248 265-647 190-447 (689)
22 TIGR00603 rad25 DNA repair hel 99.9 9.4E-21 2E-25 221.1 24.1 212 272-642 253-466 (732)
23 PRK13766 Hef nuclease; Provisi 99.6 4.9E-14 1.1E-18 170.5 23.1 171 272-566 13-188 (773)
24 COG1061 SSL2 DNA or RNA helica 99.5 6.4E-13 1.4E-17 150.5 22.6 209 271-647 33-244 (442)
25 smart00487 DEXDc DEAD-like hel 99.5 1.7E-13 3.7E-18 135.1 14.1 163 273-554 7-175 (201)
26 PF04851 ResIII: Type III rest 99.5 1.6E-13 3.6E-18 135.0 12.6 167 273-550 2-183 (184)
27 cd00046 DEXDc DEAD-like helica 99.4 9.6E-13 2.1E-17 122.1 12.4 137 298-549 2-144 (144)
28 PHA02558 uvsW UvsW helicase; P 99.4 3.8E-12 8.3E-17 146.5 17.4 148 272-552 112-262 (501)
29 KOG1123 RNA polymerase II tran 99.2 1.6E-11 3.5E-16 133.9 8.5 173 272-569 300-477 (776)
30 PRK11448 hsdR type I restricti 99.2 1.9E-10 4.2E-15 142.1 15.3 112 273-446 412-525 (1123)
31 cd00268 DEADc DEAD-box helicas 99.1 2.2E-09 4.7E-14 108.4 14.4 159 274-550 21-185 (203)
32 TIGR00348 hsdR type I site-spe 99.0 1.2E-09 2.6E-14 129.9 12.2 162 271-552 235-405 (667)
33 PF13872 AAA_34: P-loop contai 99.0 9.5E-09 2.1E-13 108.8 16.4 247 274-641 37-302 (303)
34 TIGR00643 recG ATP-dependent D 99.0 8.6E-09 1.9E-13 122.1 16.2 160 271-554 232-401 (630)
35 PF00270 DEAD: DEAD/DEAH box h 98.9 9.8E-09 2.1E-13 100.0 11.9 158 277-556 2-168 (169)
36 COG1111 MPH1 ERCC4-like helica 98.9 1.8E-07 3.9E-12 103.8 22.0 223 273-657 14-243 (542)
37 COG4096 HsdR Type I site-speci 98.9 9E-09 1.9E-13 119.6 12.4 162 269-551 160-322 (875)
38 PRK10917 ATP-dependent DNA hel 98.8 3.4E-08 7.3E-13 117.9 14.4 159 271-554 258-424 (681)
39 PRK10689 transcription-repair 98.8 5.2E-08 1.1E-12 121.3 15.4 159 272-555 598-764 (1147)
40 TIGR00580 mfd transcription-re 98.7 1.2E-07 2.6E-12 115.7 16.3 159 272-555 449-615 (926)
41 PRK11192 ATP-dependent RNA hel 98.7 1.5E-07 3.3E-12 106.7 15.4 169 274-558 23-197 (434)
42 TIGR00614 recQ_fam ATP-depende 98.7 9.5E-08 2.1E-12 109.5 12.7 163 274-565 11-188 (470)
43 PRK11776 ATP-dependent RNA hel 98.7 2.3E-07 4.9E-12 106.1 14.5 158 274-550 26-189 (460)
44 PRK01172 ski2-like helicase; P 98.7 3.4E-07 7.4E-12 109.5 16.3 103 273-445 21-124 (674)
45 PRK02362 ski2-like helicase; P 98.7 4E-07 8.7E-12 110.0 16.7 103 274-445 23-126 (737)
46 PRK00254 ski2-like helicase; P 98.6 6.3E-07 1.4E-11 108.0 17.9 160 274-559 23-187 (720)
47 PRK10590 ATP-dependent RNA hel 98.6 3.8E-07 8.3E-12 104.2 14.8 113 274-445 23-138 (456)
48 PTZ00110 helicase; Provisional 98.6 6.9E-07 1.5E-11 104.2 15.6 161 274-549 152-318 (545)
49 PTZ00424 helicase 45; Provisio 98.6 5.4E-07 1.2E-11 100.8 14.2 157 274-550 50-212 (401)
50 KOG0354 DEAD-box like helicase 98.6 1.1E-06 2.4E-11 102.7 16.4 169 273-566 61-237 (746)
51 PLN00206 DEAD-box ATP-dependen 98.6 8.1E-07 1.8E-11 103.1 14.9 164 274-550 143-311 (518)
52 TIGR01389 recQ ATP-dependent D 98.5 4.2E-07 9.2E-12 107.1 12.6 160 274-563 13-186 (591)
53 PRK11057 ATP-dependent DNA hel 98.5 5.3E-07 1.1E-11 106.5 13.4 161 274-564 25-199 (607)
54 PRK11634 ATP-dependent RNA hel 98.5 2.2E-06 4.7E-11 101.4 16.1 108 274-445 28-138 (629)
55 PRK01297 ATP-dependent RNA hel 98.5 1.7E-06 3.6E-11 99.5 14.6 114 274-445 109-226 (475)
56 PRK04837 ATP-dependent RNA hel 98.5 1.4E-06 3E-11 98.6 13.3 114 274-445 30-146 (423)
57 COG1204 Superfamily II helicas 98.4 1.7E-06 3.6E-11 103.8 13.9 166 274-567 31-203 (766)
58 PRK04537 ATP-dependent RNA hel 98.4 2.7E-06 5.8E-11 99.8 14.8 114 274-445 31-147 (572)
59 COG1200 RecG RecG-like helicas 98.4 3E-06 6.6E-11 97.8 13.5 160 271-555 259-427 (677)
60 PRK05580 primosome assembly pr 98.3 5.7E-06 1.2E-10 98.9 15.5 105 272-444 142-253 (679)
61 COG1205 Distinct helicase fami 98.3 3.4E-06 7.4E-11 102.5 13.0 158 275-548 71-241 (851)
62 TIGR03158 cas3_cyano CRISPR-as 98.3 8E-06 1.7E-10 90.4 14.0 100 278-445 1-126 (357)
63 TIGR03817 DECH_helic helicase/ 98.3 9E-06 2E-10 98.1 15.4 105 274-445 36-142 (742)
64 PRK09401 reverse gyrase; Revie 98.3 7.7E-06 1.7E-10 102.5 14.8 106 272-445 78-192 (1176)
65 PRK13767 ATP-dependent helicas 98.3 1.6E-05 3.5E-10 97.7 16.8 114 274-445 32-159 (876)
66 COG4889 Predicted helicase [Ge 98.1 5.5E-06 1.2E-10 96.4 6.9 44 272-318 159-202 (1518)
67 TIGR00595 priA primosomal prot 98.0 2.9E-05 6.2E-10 89.8 12.0 56 385-444 26-88 (505)
68 PLN03137 ATP-dependent DNA hel 98.0 3.9E-05 8.4E-10 93.9 12.5 166 273-564 459-641 (1195)
69 TIGR01587 cas3_core CRISPR-ass 98.0 5E-05 1.1E-09 83.8 12.2 57 385-445 30-107 (358)
70 TIGR03714 secA2 accessory Sec 98.0 3.8E-05 8.2E-10 91.4 11.4 105 273-445 67-177 (762)
71 COG1197 Mfd Transcription-repa 97.9 9E-05 1.9E-09 90.3 14.4 159 272-555 592-758 (1139)
72 TIGR01054 rgy reverse gyrase. 97.8 5.2E-05 1.1E-09 95.2 10.2 106 272-445 76-191 (1171)
73 COG1201 Lhr Lhr-like helicases 97.7 0.00065 1.4E-08 81.5 16.9 177 273-567 21-206 (814)
74 PF07652 Flavi_DEAD: Flaviviru 97.7 0.00031 6.6E-09 67.3 11.2 42 509-551 93-138 (148)
75 PRK14701 reverse gyrase; Provi 97.6 0.00023 5E-09 91.7 11.3 106 273-445 78-191 (1638)
76 KOG0331 ATP-dependent RNA heli 97.5 0.00066 1.4E-08 77.4 11.9 108 385-548 166-280 (519)
77 PHA02653 RNA helicase NPH-II; 97.5 0.001 2.2E-08 79.3 13.7 57 385-441 223-283 (675)
78 PRK15483 type III restriction- 97.4 0.0018 4E-08 78.8 15.1 37 514-551 204-240 (986)
79 COG0610 Type I site-specific r 97.4 0.00092 2E-08 82.8 12.2 145 295-556 272-420 (962)
80 PRK09200 preprotein translocas 97.4 0.00083 1.8E-08 80.8 10.8 101 274-445 76-181 (790)
81 TIGR02621 cas3_GSU0051 CRISPR- 97.4 0.002 4.3E-08 77.8 14.0 60 386-445 64-148 (844)
82 PRK09694 helicase Cas3; Provis 97.3 0.0027 6E-08 77.6 14.5 40 273-319 285-324 (878)
83 TIGR00963 secA preprotein tran 97.2 0.0011 2.4E-08 78.8 9.4 57 386-446 99-159 (745)
84 KOG0952 DNA/RNA helicase MER3/ 97.2 0.0023 5E-08 76.9 11.5 135 386-579 166-310 (1230)
85 PRK12898 secA preprotein trans 97.1 0.0074 1.6E-07 71.3 14.5 104 272-448 101-208 (656)
86 PRK09751 putative ATP-dependen 97.1 0.0039 8.5E-08 79.6 12.8 61 385-445 38-112 (1490)
87 KOG0350 DEAD-box ATP-dependent 96.9 0.0037 8E-08 70.0 9.4 118 273-447 158-285 (620)
88 KOG1513 Nuclear helicase MOP-3 96.9 0.0015 3.2E-08 76.1 6.0 121 514-652 408-550 (1300)
89 PRK12899 secA preprotein trans 96.9 0.0057 1.2E-07 74.1 11.1 100 275-445 93-196 (970)
90 PF13086 AAA_11: AAA domain; P 96.8 0.029 6.3E-07 57.0 14.6 40 274-320 1-41 (236)
91 COG1110 Reverse gyrase [DNA re 96.7 0.0066 1.4E-07 73.1 10.4 109 272-447 80-196 (1187)
92 TIGR01407 dinG_rel DnaQ family 96.6 0.021 4.5E-07 70.5 14.2 44 272-318 243-286 (850)
93 PRK12326 preprotein translocas 96.6 0.019 4.2E-07 68.0 12.6 104 271-447 75-182 (764)
94 COG4098 comFA Superfamily II D 96.6 0.034 7.5E-07 60.0 13.3 145 272-550 95-244 (441)
95 PF11496 HDA2-3: Class II hist 96.5 0.017 3.6E-07 62.5 10.9 118 623-741 4-134 (297)
96 COG0513 SrmB Superfamily II DN 96.5 0.031 6.8E-07 65.1 13.9 115 387-557 102-222 (513)
97 PRK13104 secA preprotein trans 96.5 0.0083 1.8E-07 72.7 9.0 56 386-445 125-184 (896)
98 TIGR03117 cas_csf4 CRISPR-asso 96.3 0.049 1.1E-06 64.6 13.6 39 385-423 47-88 (636)
99 COG4581 Superfamily II RNA hel 96.2 0.026 5.6E-07 69.4 11.3 166 270-565 115-284 (1041)
100 smart00488 DEXDc2 DEAD-like he 96.2 0.047 1E-06 58.9 12.2 43 274-319 8-50 (289)
101 smart00489 DEXDc3 DEAD-like he 96.2 0.047 1E-06 58.9 12.2 43 274-319 8-50 (289)
102 PRK13103 secA preprotein trans 96.2 0.019 4.1E-07 69.6 9.9 58 385-446 124-185 (913)
103 PRK11664 ATP-dependent RNA hel 96.2 0.041 8.8E-07 67.4 12.8 57 386-446 50-107 (812)
104 KOG0330 ATP-dependent RNA heli 96.2 0.025 5.5E-07 61.8 9.6 164 274-557 83-252 (476)
105 PF07517 SecA_DEAD: SecA DEAD- 96.1 0.026 5.7E-07 59.9 9.6 58 385-446 119-180 (266)
106 KOG0335 ATP-dependent RNA heli 96.1 0.018 3.9E-07 65.1 8.2 120 273-447 95-217 (482)
107 TIGR01970 DEAH_box_HrpB ATP-de 96.0 0.067 1.4E-06 65.5 13.4 21 298-318 19-39 (819)
108 KOG0947 Cytoplasmic exosomal R 96.0 0.02 4.4E-07 68.5 8.3 100 271-447 294-394 (1248)
109 PRK12904 preprotein translocas 95.9 0.029 6.2E-07 67.9 9.8 57 386-446 124-184 (830)
110 COG0514 RecQ Superfamily II DN 95.9 0.037 7.9E-07 64.6 10.2 161 274-566 17-193 (590)
111 PRK13107 preprotein translocas 95.8 0.074 1.6E-06 64.6 12.5 58 385-446 124-185 (908)
112 COG1202 Superfamily II helicas 95.6 0.072 1.6E-06 60.9 10.5 120 384-562 261-393 (830)
113 PF02562 PhoH: PhoH-like prote 95.5 0.056 1.2E-06 55.3 8.8 44 510-555 118-161 (205)
114 KOG0338 ATP-dependent RNA heli 95.5 0.058 1.3E-06 60.9 9.4 120 382-560 250-378 (691)
115 PRK10536 hypothetical protein; 95.5 0.035 7.6E-07 58.5 7.3 40 513-554 178-217 (262)
116 KOG0348 ATP-dependent RNA heli 95.3 0.072 1.6E-06 60.5 9.0 113 275-446 160-276 (708)
117 KOG0343 RNA Helicase [RNA proc 95.1 0.074 1.6E-06 60.6 8.6 61 386-447 143-205 (758)
118 KOG1802 RNA helicase nonsense 95.0 0.099 2.1E-06 60.7 9.2 80 274-424 410-490 (935)
119 COG3587 Restriction endonuclea 94.9 0.11 2.3E-06 62.1 9.5 34 514-548 208-241 (985)
120 PRK12906 secA preprotein trans 94.8 0.11 2.5E-06 62.7 9.8 103 272-447 78-184 (796)
121 COG1203 CRISPR-associated heli 94.8 0.17 3.6E-06 61.7 11.4 46 272-320 193-238 (733)
122 KOG4284 DEAD box protein [Tran 94.1 0.083 1.8E-06 61.1 6.0 116 387-558 96-217 (980)
123 KOG0353 ATP-dependent DNA heli 93.8 0.4 8.6E-06 52.3 10.3 56 507-562 211-273 (695)
124 PRK07246 bifunctional ATP-depe 93.5 0.67 1.4E-05 57.1 12.9 42 273-317 244-285 (820)
125 KOG0336 ATP-dependent RNA heli 93.5 0.3 6.6E-06 53.9 8.7 119 383-557 293-415 (629)
126 PRK12902 secA preprotein trans 93.4 0.38 8.2E-06 58.5 10.1 59 385-447 127-189 (939)
127 PRK11131 ATP-dependent RNA hel 93.3 0.21 4.5E-06 63.4 8.3 38 511-549 186-228 (1294)
128 PRK14873 primosome assembly pr 93.1 0.37 8.1E-06 57.7 9.5 57 385-444 189-252 (665)
129 CHL00122 secA preprotein trans 93.0 0.39 8.4E-06 58.4 9.4 59 385-447 118-180 (870)
130 PRK08074 bifunctional ATP-depe 92.1 1.5 3.2E-05 55.0 13.5 42 273-317 256-297 (928)
131 KOG0342 ATP-dependent RNA heli 92.0 1 2.2E-05 51.0 10.5 62 385-446 155-219 (543)
132 KOG1132 Helicase of the DEAD s 91.8 1.8 4E-05 52.2 12.8 45 273-320 20-64 (945)
133 PF09848 DUF2075: Uncharacteri 91.7 0.85 1.8E-05 50.5 9.7 20 301-320 6-25 (352)
134 TIGR00376 DNA helicase, putati 91.6 0.81 1.7E-05 54.8 10.0 41 273-319 156-196 (637)
135 PHA02533 17 large terminase pr 91.5 2.6 5.7E-05 49.4 13.8 42 271-319 56-97 (534)
136 TIGR01967 DEAH_box_HrpA ATP-de 91.3 0.79 1.7E-05 58.5 9.8 19 299-317 85-103 (1283)
137 COG0556 UvrB Helicase subunit 91.3 0.66 1.4E-05 53.1 8.1 68 278-410 16-84 (663)
138 KOG0345 ATP-dependent RNA heli 90.8 2.9 6.2E-05 47.4 12.4 57 386-445 81-144 (567)
139 PF13604 AAA_30: AAA domain; P 90.7 3.9 8.5E-05 41.4 12.6 40 274-318 1-40 (196)
140 KOG1803 DNA helicase [Replicat 90.5 0.24 5.1E-06 57.4 3.8 44 271-320 182-225 (649)
141 KOG0948 Nuclear exosomal RNA h 90.2 0.88 1.9E-05 53.9 8.0 105 266-447 121-226 (1041)
142 KOG0328 Predicted ATP-dependen 89.9 1.3 2.8E-05 47.0 8.2 59 507-569 165-226 (400)
143 PRK12903 secA preprotein trans 89.4 1.8 3.9E-05 52.8 10.1 59 385-447 120-182 (925)
144 PRK12900 secA preprotein trans 89.4 2.4 5.1E-05 52.5 11.2 58 386-447 181-242 (1025)
145 COG1198 PriA Primosomal protei 89.3 2.3 5.1E-05 51.3 11.0 106 273-445 197-309 (730)
146 KOG0339 ATP-dependent RNA heli 88.8 2.8 6.1E-05 47.9 10.4 58 387-445 299-359 (731)
147 PF02399 Herpes_ori_bp: Origin 88.8 2.2 4.7E-05 51.7 10.1 37 512-548 143-189 (824)
148 TIGR01447 recD exodeoxyribonuc 88.7 3.8 8.3E-05 48.6 12.2 40 510-551 258-297 (586)
149 PRK12901 secA preprotein trans 88.7 2.8 6.1E-05 52.0 11.1 58 386-447 212-274 (1112)
150 KOG0951 RNA helicase BRR2, DEA 88.0 2.3 5.1E-05 53.2 9.7 54 386-441 366-420 (1674)
151 TIGR01448 recD_rel helicase, p 87.6 5.8 0.00013 48.4 13.1 40 511-552 416-455 (720)
152 PRK10875 recD exonuclease V su 87.2 4.2 9.1E-05 48.5 11.3 41 510-552 264-304 (615)
153 PRK04296 thymidine kinase; Pro 86.6 1.9 4.1E-05 43.4 7.0 36 511-548 78-114 (190)
154 PF06733 DEAD_2: DEAD_2; Inte 86.2 0.54 1.2E-05 46.5 2.7 17 429-445 116-132 (174)
155 KOG0347 RNA helicase [RNA proc 86.0 1.4 3E-05 50.7 6.0 59 386-445 265-326 (731)
156 COG0653 SecA Preprotein transl 85.6 6.1 0.00013 48.2 11.5 116 385-564 122-241 (822)
157 KOG0926 DEAH-box RNA helicase 84.1 1.9 4.2E-05 51.6 6.2 21 298-318 273-293 (1172)
158 COG1875 NYN ribonuclease and A 82.2 3.5 7.7E-05 45.5 6.9 40 275-319 229-268 (436)
159 KOG0334 RNA helicase [RNA proc 81.7 3.8 8.2E-05 50.5 7.7 57 387-444 441-500 (997)
160 PF05876 Terminase_GpA: Phage 79.6 6.7 0.00015 46.3 8.8 47 266-318 9-55 (557)
161 KOG0333 U5 snRNP-like RNA heli 79.5 3.7 8.1E-05 47.1 6.2 59 386-445 324-385 (673)
162 KOG0340 ATP-dependent RNA heli 79.4 14 0.00031 40.6 10.3 59 387-446 78-139 (442)
163 KOG0344 ATP-dependent RNA heli 79.3 3.5 7.5E-05 47.9 5.9 60 387-446 212-276 (593)
164 KOG1805 DNA replication helica 79.2 16 0.00036 45.0 11.7 41 274-320 669-709 (1100)
165 PF13401 AAA_22: AAA domain; P 78.6 1.5 3.2E-05 40.5 2.4 35 513-549 89-125 (131)
166 PRK11747 dinG ATP-dependent DN 78.1 1.8 3.8E-05 52.6 3.5 45 273-317 24-70 (697)
167 TIGR02881 spore_V_K stage V sp 76.9 5.9 0.00013 41.9 6.7 21 299-319 45-65 (261)
168 PF12340 DUF3638: Protein of u 76.3 17 0.00037 37.9 9.6 111 272-445 21-143 (229)
169 KOG0351 ATP-dependent DNA heli 75.0 11 0.00024 47.0 9.1 58 512-569 386-450 (941)
170 KOG0337 ATP-dependent RNA heli 74.6 9.3 0.0002 42.9 7.4 104 386-548 92-204 (529)
171 TIGR03420 DnaA_homol_Hda DnaA 70.7 80 0.0017 31.9 13.1 37 514-550 93-133 (226)
172 PRK07003 DNA polymerase III su 69.7 29 0.00064 42.4 10.6 57 511-569 119-178 (830)
173 TIGR00631 uvrb excinuclease AB 69.6 21 0.00046 43.1 9.6 70 275-409 10-80 (655)
174 KOG0922 DEAH-box RNA helicase 68.1 23 0.00049 42.1 9.0 46 511-560 163-216 (674)
175 cd00009 AAA The AAA+ (ATPases 65.7 92 0.002 28.0 11.3 41 512-552 85-132 (151)
176 TIGR00596 rad1 DNA repair prot 65.0 33 0.00071 42.4 10.1 110 511-655 31-146 (814)
177 TIGR02880 cbbX_cfxQ probable R 64.9 13 0.00029 39.8 6.2 23 298-320 60-82 (284)
178 PF13173 AAA_14: AAA domain 64.0 7.7 0.00017 36.1 3.6 39 513-552 63-101 (128)
179 PRK12402 replication factor C 63.6 18 0.00039 39.2 7.0 22 298-319 38-59 (337)
180 COG4646 DNA methylase [Transcr 62.0 4.7 0.0001 45.5 2.0 41 539-579 473-518 (637)
181 PRK14087 dnaA chromosomal repl 61.8 49 0.0011 38.1 10.3 38 512-549 207-250 (450)
182 PRK09112 DNA polymerase III su 59.5 33 0.00072 38.1 8.2 42 279-320 28-69 (351)
183 COG1643 HrpA HrpA-like helicas 59.0 45 0.00097 41.4 9.7 21 299-319 68-88 (845)
184 CHL00181 cbbX CbbX; Provisiona 57.4 27 0.00059 37.6 6.9 21 299-319 62-82 (287)
185 KOG1133 Helicase of the DEAD s 57.2 3.5 7.7E-05 48.7 0.1 36 406-446 302-337 (821)
186 TIGR00604 rad3 DNA repair heli 57.0 4.8 0.0001 48.9 1.1 44 274-320 10-53 (705)
187 COG0553 HepA Superfamily II DN 56.8 4.9 0.00011 49.5 1.2 65 507-571 205-289 (866)
188 TIGR00362 DnaA chromosomal rep 55.9 1E+02 0.0022 34.7 11.5 37 512-548 200-240 (405)
189 PRK00149 dnaA chromosomal repl 55.5 1E+02 0.0023 35.3 11.7 21 299-319 151-171 (450)
190 KOG0346 RNA helicase [RNA proc 55.4 24 0.00052 40.0 6.0 60 387-446 96-159 (569)
191 KOG0920 ATP-dependent RNA heli 55.1 1.5E+02 0.0032 37.2 13.1 41 274-321 173-213 (924)
192 PRK08084 DNA replication initi 55.1 1.4E+02 0.003 31.1 11.5 36 513-548 99-139 (235)
193 PHA02544 44 clamp loader, smal 53.8 1.4E+02 0.0031 32.0 11.9 50 512-561 101-152 (316)
194 KOG0950 DNA polymerase theta/e 53.7 54 0.0012 40.6 9.0 58 385-445 270-328 (1008)
195 PHA03368 DNA packaging termina 52.8 62 0.0013 39.0 9.1 58 507-566 348-418 (738)
196 PRK14088 dnaA chromosomal repl 52.2 2.4E+02 0.0053 32.3 13.8 37 512-548 195-235 (440)
197 PRK05298 excinuclease ABC subu 51.6 71 0.0015 38.6 9.8 73 272-409 10-83 (652)
198 PRK14960 DNA polymerase III su 51.0 1.6E+02 0.0034 35.8 12.2 22 298-319 39-60 (702)
199 PRK04195 replication factor C 50.9 1.2E+02 0.0026 35.1 11.3 23 296-318 39-61 (482)
200 PF13245 AAA_19: Part of AAA d 50.5 34 0.00074 29.1 5.0 22 300-321 14-35 (76)
201 KOG0329 ATP-dependent RNA heli 50.0 24 0.00053 37.2 4.7 60 386-445 112-174 (387)
202 KOG0949 Predicted helicase, DE 49.8 99 0.0021 38.7 10.2 49 512-562 633-682 (1330)
203 TIGR00604 rad3 DNA repair heli 49.5 50 0.0011 40.3 8.1 12 513-524 222-233 (705)
204 PLN03025 replication factor C 48.7 30 0.00065 37.6 5.6 61 511-571 99-160 (319)
205 TIGR02768 TraA_Ti Ti-type conj 48.4 1.5E+02 0.0032 36.5 12.0 42 272-319 350-391 (744)
206 KOG0326 ATP-dependent RNA heli 46.7 73 0.0016 34.9 7.7 54 387-444 156-215 (459)
207 PF13177 DNA_pol3_delta2: DNA 46.0 2.9E+02 0.0063 26.8 12.0 21 300-320 23-43 (162)
208 PHA00673 acetyltransferase dom 45.1 39 0.00083 33.1 5.1 45 511-555 87-134 (154)
209 PRK14086 dnaA chromosomal repl 44.9 1.2E+02 0.0025 36.5 9.9 37 512-548 378-418 (617)
210 PRK08116 hypothetical protein; 44.8 2.7E+02 0.0059 29.6 12.0 24 296-319 114-137 (268)
211 PRK07764 DNA polymerase III su 43.1 73 0.0016 39.6 8.2 41 277-320 21-61 (824)
212 cd01121 Sms Sms (bacterial rad 42.0 1.9E+02 0.004 32.5 10.6 20 300-319 86-105 (372)
213 PHA03372 DNA packaging termina 41.8 79 0.0017 37.7 7.7 19 507-525 295-313 (668)
214 cd05566 PTS_IIB_galactitol PTS 41.6 31 0.00068 29.8 3.6 55 386-442 2-58 (89)
215 COG0464 SpoVK ATPases of the A 41.3 45 0.00097 38.6 5.8 44 275-318 250-298 (494)
216 PRK12723 flagellar biosynthesi 40.7 2.3E+02 0.005 32.1 11.0 57 511-567 254-315 (388)
217 COG3421 Uncharacterized protei 40.3 38 0.00082 39.9 4.8 17 304-320 5-21 (812)
218 PRK08727 hypothetical protein; 39.9 2.2E+02 0.0047 29.5 10.2 20 299-318 44-63 (233)
219 PRK13889 conjugal transfer rel 38.4 2.4E+02 0.0052 35.9 11.7 41 512-554 434-475 (988)
220 PRK14974 cell division protein 38.2 3.3E+02 0.0072 30.1 11.6 21 300-320 144-164 (336)
221 KOG0951 RNA helicase BRR2, DEA 36.7 2E+02 0.0043 37.3 10.2 55 385-444 1187-1246(1674)
222 COG1702 PhoH Phosphate starvat 36.2 20 0.00044 39.4 1.7 39 513-553 245-283 (348)
223 KOG0952 DNA/RNA helicase MER3/ 35.2 69 0.0015 40.2 6.1 57 382-444 971-1032(1230)
224 PRK12422 chromosomal replicati 34.9 2.1E+02 0.0045 33.0 9.8 37 512-548 203-243 (445)
225 cd01120 RecA-like_NTPases RecA 34.1 3.8E+02 0.0082 24.7 10.7 19 301-319 4-22 (165)
226 KOG0327 Translation initiation 33.8 84 0.0018 35.1 6.0 42 507-548 165-209 (397)
227 PRK05703 flhF flagellar biosyn 33.2 2.8E+02 0.0061 31.7 10.4 55 511-566 299-359 (424)
228 KOG0924 mRNA splicing factor A 32.4 1.9E+02 0.0042 34.9 8.7 20 299-318 374-393 (1042)
229 cd05563 PTS_IIB_ascorbate PTS_ 32.3 80 0.0017 27.0 4.6 52 387-442 2-55 (86)
230 cd05568 PTS_IIB_bgl_like PTS_I 32.1 66 0.0014 27.1 4.0 53 386-442 2-56 (85)
231 COG1199 DinG Rad3-related DNA 31.7 28 0.00061 41.8 2.2 48 272-322 13-60 (654)
232 COG3267 ExeA Type II secretory 30.1 71 0.0015 34.0 4.5 37 513-549 133-173 (269)
233 PF04423 Rad50_zn_hook: Rad50 29.9 45 0.00097 26.4 2.4 23 707-729 9-31 (54)
234 PF03354 Terminase_1: Phage Te 29.8 2.9E+02 0.0063 31.9 10.0 45 277-321 1-47 (477)
235 COG1199 DinG Rad3-related DNA 29.6 1.6E+02 0.0036 35.3 8.2 14 512-525 221-234 (654)
236 PRK05642 DNA replication initi 28.9 3.6E+02 0.0077 27.9 9.6 36 513-548 99-138 (234)
237 KOG0740 AAA+-type ATPase [Post 28.9 2.6E+02 0.0057 32.0 9.0 24 295-318 185-208 (428)
238 KOG1131 RNA polymerase II tran 28.6 1.1E+02 0.0023 35.9 5.7 46 275-323 17-62 (755)
239 cd00133 PTS_IIB PTS_IIB: subun 28.5 98 0.0021 25.4 4.5 53 387-442 2-56 (84)
240 PRK07952 DNA replication prote 27.4 2.4E+02 0.0052 29.7 8.0 44 277-320 79-123 (244)
241 PF02302 PTS_IIB: PTS system, 27.4 60 0.0013 27.9 3.0 51 387-443 2-58 (90)
242 KOG0298 DEAD box-containing he 25.5 36 0.00078 43.3 1.6 23 299-321 377-399 (1394)
243 TIGR03015 pepcterm_ATPase puta 25.4 51 0.0011 34.4 2.5 19 299-317 46-64 (269)
244 PRK11054 helD DNA helicase IV; 25.3 1.4E+02 0.0031 36.3 6.6 39 511-552 430-471 (684)
245 PRK13709 conjugal transfer nic 24.9 6.4E+02 0.014 34.3 12.7 43 272-319 965-1007(1747)
246 KOG0925 mRNA splicing factor A 24.7 59 0.0013 37.5 2.9 50 511-564 159-216 (699)
247 PF00308 Bac_DnaA: Bacterial d 24.6 6.3E+02 0.014 25.8 10.4 37 511-547 97-137 (219)
248 COG3972 Superfamily I DNA and 24.4 5.4E+02 0.012 30.2 10.3 39 511-552 295-334 (660)
249 PRK06893 DNA replication initi 24.3 5.1E+02 0.011 26.6 9.7 19 300-318 43-61 (229)
250 PRK13826 Dtr system oriT relax 24.0 6.8E+02 0.015 32.4 12.2 40 513-554 470-510 (1102)
251 TIGR01547 phage_term_2 phage t 23.7 3.1E+02 0.0066 30.7 8.6 38 512-551 102-142 (396)
252 TIGR03345 VI_ClpV1 type VI sec 23.4 3.9E+02 0.0084 33.6 10.0 40 279-319 192-231 (852)
253 PF05621 TniB: Bacterial TniB 23.3 48 0.001 36.0 1.9 43 507-549 141-189 (302)
254 COG4626 Phage terminase-like p 22.9 1.3E+03 0.029 27.3 13.4 60 506-565 179-243 (546)
255 KOG0352 ATP-dependent DNA heli 22.6 1E+02 0.0022 35.1 4.2 55 512-566 142-203 (641)
256 CHL00095 clpC Clp protease ATP 22.0 2.4E+02 0.0053 35.1 7.9 22 298-319 202-223 (821)
257 PRK08769 DNA polymerase III su 21.7 1.6E+02 0.0034 32.4 5.5 48 273-320 3-50 (319)
258 PRK11889 flhF flagellar biosyn 21.6 5.6E+02 0.012 29.4 9.8 55 511-565 320-378 (436)
259 cd05567 PTS_IIB_mannitol PTS_I 20.2 1.4E+02 0.0031 25.8 3.9 54 386-444 2-57 (87)
No 1
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.3e-65 Score=569.58 Aligned_cols=343 Identities=26% Similarity=0.445 Sum_probs=287.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCC
Q 004604 265 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (743)
Q Consensus 265 ~~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (743)
+.|..+....|++||.+||.||.++.. ++-+||||||||||||+|+|||+.+++..
T Consensus 158 ~sP~~v~~g~lr~YQveGlnWLi~l~e---ngingILaDEMGLGKTlQtIs~l~yl~~~--------------------- 213 (971)
T KOG0385|consen 158 DSPSYVKGGELRDYQLEGLNWLISLYE---NGINGILADEMGLGKTLQTISLLGYLKGR--------------------- 213 (971)
T ss_pred CCchhhcCCccchhhhccHHHHHHHHh---cCcccEeehhcccchHHHHHHHHHHHHHh---------------------
Confidence 367776668999999999999999876 45579999999999999999999987753
Q ss_pred CCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCC
Q 004604 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT 424 (743)
Q Consensus 345 d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~ 424 (743)
++..+|+||+||.|++.||.+||.+|+| .+++++|+|....
T Consensus 214 ------------------------------------~~~~GPfLVi~P~StL~NW~~Ef~rf~P---~l~~~~~~Gdk~e 254 (971)
T KOG0385|consen 214 ------------------------------------KGIPGPFLVIAPKSTLDNWMNEFKRFTP---SLNVVVYHGDKEE 254 (971)
T ss_pred ------------------------------------cCCCCCeEEEeeHhhHHHHHHHHHHhCC---CcceEEEeCCHHH
Confidence 1445889999999999999999999999 8999999999854
Q ss_pred CC-----hhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCC
Q 004604 425 KD-----PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSS 499 (743)
Q Consensus 425 ~~-----~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~ 499 (743)
+. ...-..+||+||||+++.++-
T Consensus 255 R~~~~r~~~~~~~fdV~iTsYEi~i~dk---------------------------------------------------- 282 (971)
T KOG0385|consen 255 RAALRRDIMLPGRFDVCITSYEIAIKDK---------------------------------------------------- 282 (971)
T ss_pred HHHHHHHhhccCCCceEeehHHHHHhhH----------------------------------------------------
Confidence 32 222358999999999987641
Q ss_pred cccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHh
Q 004604 500 IDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTI 579 (743)
Q Consensus 500 ~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f 579 (743)
+.|..+.|.++||||||+|||.++..++.++.+.+.+|++|||||+||++.|||+||+||.|+.|.+.+.|...|
T Consensus 283 -----~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF 357 (971)
T KOG0385|consen 283 -----SFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWF 357 (971)
T ss_pred -----HHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHH
Confidence 347889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 004604 580 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTV 659 (743)
Q Consensus 580 ~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~g~~ 659 (743)
......++...+.+|+.+|+||+|||.|.+|.. .||||.+.+++|.|+..|+++|.+++..-...+. ..+.
T Consensus 358 ~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~-----sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n---~~~~- 428 (971)
T KOG0385|consen 358 DFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK-----SLPPKKELIIYVGMSSMQKKWYKAILMKDLDALN---GEGK- 428 (971)
T ss_pred cccccccCHHHHHHHHhhhhHHHHHHHHHhHhh-----cCCCcceeeEeccchHHHHHHHHHHHHhcchhhc---cccc-
Confidence 877666777788999999999999999999986 7999999999999999999999999776544332 2222
Q ss_pred cccHHHHHHHHHHHHHHcCCcccccccCCCccccchHHHHhcC-CHHHHHHHHHHhhhccccccccceeeEeecccchhh
Q 004604 660 NQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRL-PRDMLIDLLSRLETSSAICCVCSVSFYFKRNTSILF 738 (743)
Q Consensus 660 ~~~~~~iL~lL~rLRqiC~HP~Lv~~~~~~~~~~~~~e~~~~l-~~~~l~~Ll~~l~~~~~~c~~C~~~l~f~q~~~~L~ 738 (743)
.....+++++|+||++||||+|+.+.+...--.....+...- ..-+++.||.+|.. .+|++|+|||+|+|||
T Consensus 429 -~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~------~GhRVLIFSQmt~mLD 501 (971)
T KOG0385|consen 429 -GEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKE------QGHRVLIFSQMTRMLD 501 (971)
T ss_pred -chhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHh------CCCeEEEeHHHHHHHH
Confidence 245788999999999999999999977632111222222211 12367788888865 4589999999999999
Q ss_pred cccCC
Q 004604 739 LSGIF 743 (743)
Q Consensus 739 ~~~~~ 743 (743)
|++.|
T Consensus 502 ILeDy 506 (971)
T KOG0385|consen 502 ILEDY 506 (971)
T ss_pred HHHHH
Confidence 98754
No 2
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=8.1e-63 Score=526.33 Aligned_cols=313 Identities=43% Similarity=0.721 Sum_probs=268.5
Q ss_pred ccCCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCC
Q 004604 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (743)
Q Consensus 264 ~~~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (743)
.++|.++ .++|+|||++||+|+..+|.+. ..|||||||||+|||||+|||++..
T Consensus 175 aeqP~dl-ii~LL~fQkE~l~Wl~~QE~Ss--~~GGiLADEMGMGKTIQtIaLllae----------------------- 228 (791)
T KOG1002|consen 175 AEQPDDL-IIPLLPFQKEGLAWLTSQEESS--VAGGILADEMGMGKTIQTIALLLAE----------------------- 228 (791)
T ss_pred ccCcccc-eecchhhhHHHHHHHHHhhhhh--hccceehhhhccchHHHHHHHHHhc-----------------------
Confidence 4667775 7899999999999999999864 5899999999999999999999741
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCC
Q 004604 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 423 (743)
Q Consensus 344 ~d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r 423 (743)
....+||||||.-.+.||.+||.+|... .++|++|||..|
T Consensus 229 --------------------------------------~~ra~tLVvaP~VAlmQW~nEI~~~T~g--slkv~~YhG~~R 268 (791)
T KOG1002|consen 229 --------------------------------------VDRAPTLVVAPTVALMQWKNEIERHTSG--SLKVYIYHGAKR 268 (791)
T ss_pred --------------------------------------cccCCeeEEccHHHHHHHHHHHHHhccC--ceEEEEEecccc
Confidence 1124599999999999999999999873 899999999999
Q ss_pred CCChhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccC
Q 004604 424 TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (743)
Q Consensus 424 ~~~~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (743)
.++..++..||||+|||.++.+.+.++. +| |. +| ...+..
T Consensus 269 ~~nikel~~YDvVLTty~vvEs~yRk~~--------------~G----fr------------------rK----ngv~ke 308 (791)
T KOG1002|consen 269 DKNIKELMNYDVVLTTYAVVESVYRKQD--------------YG----FR------------------RK----NGVDKE 308 (791)
T ss_pred cCCHHHhhcCcEEEEecHHHHHHHHhcc--------------cc----cc------------------cc----CCcccc
Confidence 9999999999999999999998765521 11 00 00 123445
Q ss_pred CCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcH-----------
Q 004604 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVY----------- 572 (743)
Q Consensus 504 ~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~----------- 572 (743)
.++|+.+.|.||||||||.||+..+.+++|++.|.+.+||||||||+||++.|||||++||+.+||..|
T Consensus 309 ~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~ 388 (791)
T KOG1002|consen 309 KSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLD 388 (791)
T ss_pred cchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccc
Confidence 678999999999999999999999999999999999999999999999999999999999999987432
Q ss_pred --------------------HHHHHHhcccccCCc-----hhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEE
Q 004604 573 --------------------KSFYSTIKIPISRNS-----LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLT 627 (743)
Q Consensus 573 --------------------~~F~~~f~~pi~~~~-----~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv 627 (743)
..|.....+||.+.+ ..++...+.+|+.+||||||-+-.+ -+.|||+...+.
T Consensus 389 ~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAd---DLgLPPRiv~vR 465 (791)
T KOG1002|consen 389 WKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERAD---DLGLPPRIVTVR 465 (791)
T ss_pred eeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhccccc---ccCCCccceeee
Confidence 123333455665443 3456688999999999999976544 268999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHcCCcccccc
Q 004604 628 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE 685 (743)
Q Consensus 628 ~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~lL~rLRqiC~HP~Lv~~ 685 (743)
.--|+.+|..+|+.+....+..|+.|..+|.+..||++|+.+|+||||+++||+||..
T Consensus 466 rD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~ 523 (791)
T KOG1002|consen 466 RDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLY 523 (791)
T ss_pred hhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeee
Confidence 9999999999999999999999999999999999999999999999999999999864
No 3
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.7e-61 Score=537.98 Aligned_cols=341 Identities=27% Similarity=0.438 Sum_probs=271.9
Q ss_pred ccCCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCC
Q 004604 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (743)
Q Consensus 264 ~~~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (743)
+.+|+.+ ...|++||++||.|||.... +..|||||||||||||||+|+|++.+...
T Consensus 196 ~~vPg~I-~~~Lf~yQreGV~WL~~L~~---q~~GGILgDeMGLGKTIQiisFLaaL~~S-------------------- 251 (923)
T KOG0387|consen 196 FKVPGFI-WSKLFPYQREGVQWLWELYC---QRAGGILGDEMGLGKTIQIISFLAALHHS-------------------- 251 (923)
T ss_pred ccccHHH-HHHhhHHHHHHHHHHHHHHh---ccCCCeecccccCccchhHHHHHHHHhhc--------------------
Confidence 5677665 66899999999999998876 45799999999999999999999865421
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCC
Q 004604 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 423 (743)
Q Consensus 344 ~d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r 423 (743)
....+|+|||||++++.||.+||.+|+| .++|.+|||...
T Consensus 252 -------------------------------------~k~~~paLIVCP~Tii~qW~~E~~~w~p---~~rv~ilh~t~s 291 (923)
T KOG0387|consen 252 -------------------------------------GKLTKPALIVCPATIIHQWMKEFQTWWP---PFRVFILHGTGS 291 (923)
T ss_pred -------------------------------------ccccCceEEEccHHHHHHHHHHHHHhCc---ceEEEEEecCCc
Confidence 0223789999999999999999999999 799999999876
Q ss_pred CC-----------C----hhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccc
Q 004604 424 TK-----------D----PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRG 488 (743)
Q Consensus 424 ~~-----------~----~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~ 488 (743)
.. + ........|+||||+.++..
T Consensus 292 ~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~------------------------------------------ 329 (923)
T KOG0387|consen 292 GARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ------------------------------------------ 329 (923)
T ss_pred ccccccchhhhhhhhhheeeecccCcEEEEehhhhccc------------------------------------------
Confidence 31 0 11234567999999998742
Q ss_pred cCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCC
Q 004604 489 KKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568 (743)
Q Consensus 489 ~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~ 568 (743)
..++..+.|++|||||+|+|||++|+++.+|+.|++.+|++||||||||++.|||+|++|+.|+.
T Consensus 330 ---------------~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~ 394 (923)
T KOG0387|consen 330 ---------------GDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGK 394 (923)
T ss_pred ---------------CcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCc
Confidence 13477899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhcccccCCchh------------HHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHH
Q 004604 569 YAVYKSFYSTIKIPISRNSLH------------GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEW 636 (743)
Q Consensus 569 ~~~~~~F~~~f~~pi~~~~~~------------~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr 636 (743)
+++...|.+.|..||..++.. ....|+.+++||+|||+|.+|.. +.||.|.++|++|.||+.||
T Consensus 395 Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----~~Lp~K~E~VlfC~LT~~QR 470 (923)
T KOG0387|consen 395 LGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----LKLPKKEEIVLFCRLTKLQR 470 (923)
T ss_pred ccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----ccCCCccceEEEEeccHHHH
Confidence 999999999999999887542 23579999999999999999975 68999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHcCCcccccccCCCccc-cch-HHHHhcCCHHHHHHHHHHh
Q 004604 637 AFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVG-KIS-GEMAKRLPRDMLIDLLSRL 714 (743)
Q Consensus 637 ~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~lL~rLRqiC~HP~Lv~~~~~~~~~-~~~-~e~~~~l~~~~l~~Ll~~l 714 (743)
.+|+++.+-. .+..... |. .++|..+.-||+|||||.|+.......-. ... ......-..+++..||..-
T Consensus 471 ~~Y~~fl~s~--~v~~i~n-g~-----~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W 542 (923)
T KOG0387|consen 471 RLYQRFLNSS--EVNKILN-GK-----RNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDW 542 (923)
T ss_pred HHHHHHhhhH--HHHHHHc-CC-----ccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHH
Confidence 9999987632 2333332 22 46788889999999999999864211111 111 0001111112445555433
Q ss_pred hhccccccccceeeEeecccchhhcccCC
Q 004604 715 ETSSAICCVCSVSFYFKRNTSILFLSGIF 743 (743)
Q Consensus 715 ~~~~~~c~~C~~~l~f~q~~~~L~~~~~~ 743 (743)
.. ..+++|.|+|--+||+|++.|
T Consensus 543 ~k------qg~rvllFsqs~~mLdilE~f 565 (923)
T KOG0387|consen 543 KK------QGDRVLLFSQSRQMLDILESF 565 (923)
T ss_pred hh------CCCEEEEehhHHHHHHHHHHH
Confidence 22 457999999999999998764
No 4
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=7.3e-61 Score=529.34 Aligned_cols=316 Identities=43% Similarity=0.734 Sum_probs=262.0
Q ss_pred cCCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCC
Q 004604 265 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (743)
Q Consensus 265 ~~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (743)
+-|.+ +.+.|+|||+.|++||..+|.. ...|||||||||||||+++|++|+..+.......
T Consensus 317 e~P~g-~~v~LmpHQkaal~Wl~wRE~q--~~~GGILaddmGLGKTlsmislil~qK~~~~~~~---------------- 377 (901)
T KOG4439|consen 317 ETPDG-LKVELMPHQKAALRWLLWRESQ--PPSGGILADDMGLGKTLSMISLILHQKAARKARE---------------- 377 (901)
T ss_pred CCCCc-ceeecchhhhhhhhhhcccccC--CCCCcccccccccccchHHHHHHHHHHHHHHhhc----------------
Confidence 44555 5899999999999999999985 4689999999999999999999987654310000
Q ss_pred CCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCC-C
Q 004604 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS-R 423 (743)
Q Consensus 345 d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~-r 423 (743)
. ....+.+||||||+||+.||..|+++.+... .|+|++|||++ |
T Consensus 378 ~----------------------------------~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n-~LsV~~~HG~n~r 422 (901)
T KOG4439|consen 378 K----------------------------------KGESASKTLIICPASLIHQWEAEVARRLEQN-ALSVYLYHGPNKR 422 (901)
T ss_pred c----------------------------------cccccCCeEEeCcHHHHHHHHHHHHHHHhhc-ceEEEEecCCccc
Confidence 0 0001124999999999999999999998765 89999999999 6
Q ss_pred CCChhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccC
Q 004604 424 TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (743)
Q Consensus 424 ~~~~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (743)
......+.+||||||||..+.+.-. ++.. ....
T Consensus 423 ~i~~~~L~~YDvViTTY~lva~~~~-------~e~~----------------------------------------~~~~ 455 (901)
T KOG4439|consen 423 EISAKELRKYDVVITTYNLVANKPD-------DELE----------------------------------------EGKN 455 (901)
T ss_pred cCCHHHHhhcceEEEeeeccccCCc-------hhhh----------------------------------------cccC
Confidence 7788999999999999999886210 0000 0124
Q ss_pred CCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHhcccc
Q 004604 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI 583 (743)
Q Consensus 504 ~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f~~pi 583 (743)
.++|.++.|.||||||||.|||++|+.+.|+|.|++..|||||||||||++-|+|+|++||+..+|+++..|.+.+..+
T Consensus 456 ~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~- 534 (901)
T KOG4439|consen 456 SSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNM- 534 (901)
T ss_pred ccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCc-
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred cCCchhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhc-------
Q 004604 584 SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA------- 656 (743)
Q Consensus 584 ~~~~~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~------- 656 (743)
...+..++.-+.++.||||||+.+-.+++++.||.+...++.++|+..|...|+-+.+..+..++.+...
T Consensus 535 ---s~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~ 611 (901)
T KOG4439|consen 535 ---SKGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNND 611 (901)
T ss_pred ---cccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 2334567888899999999999987788999999999999999999999999999999888887664321
Q ss_pred -----------------------------CCccccHHHHHHHHHHHHHHcCCcccccc
Q 004604 657 -----------------------------GTVNQNYANILLMLLRLRQACDHPLLVKE 685 (743)
Q Consensus 657 -----------------------------g~~~~~~~~iL~lL~rLRqiC~HP~Lv~~ 685 (743)
|.-......||.+|+||||+||||.+++.
T Consensus 612 ~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~ 669 (901)
T KOG4439|consen 612 GGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKA 669 (901)
T ss_pred cCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhcc
Confidence 11112345789999999999999987764
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.9e-59 Score=540.30 Aligned_cols=365 Identities=30% Similarity=0.462 Sum_probs=285.1
Q ss_pred HHHHHHhcCCC-Cc-cccCCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccc
Q 004604 250 YQAALEDLNQP-KV-EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKS 327 (743)
Q Consensus 250 ~~~~~~~l~~~-~~-~~~~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~ 327 (743)
+...++.+-.+ +. ++.+|..+ +..||.||.+||.|+.-..+-.+| ||||||||||||+|+|++++.-....
T Consensus 950 erkFLeqlldpski~~y~Ip~pI-~a~LRkYQqEGVnWLaFLnky~LH---GILcDDMGLGKTLQticilAsd~y~r--- 1022 (1549)
T KOG0392|consen 950 ERKFLEQLLDPSKIPEYKIPVPI-SAKLRKYQQEGVNWLAFLNKYKLH---GILCDDMGLGKTLQTICILASDHYKR--- 1022 (1549)
T ss_pred HHHHHHHhcCcccCCccccccch-hHHHHHHHHhccHHHHHHHHhccc---ceeeccccccHHHHHHHHHHHHHHhh---
Confidence 44445555443 33 46778775 789999999999999877664454 99999999999999999998643320
Q ss_pred hhhhccccccccccCCCCCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhC
Q 004604 328 KTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKV 407 (743)
Q Consensus 328 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~ 407 (743)
+. .+.+ -...|.|||||.+|..+|+.|+.+++
T Consensus 1023 --------~s------------------------------------~~~e----~~~~PSLIVCPsTLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 1023 --------RS------------------------------------ESSE----FNRLPSLIVCPSTLTGHWKSEVKKFF 1054 (1549)
T ss_pred --------cc------------------------------------cchh----hccCCeEEECCchhhhHHHHHHHHhc
Confidence 00 0001 12356899999999999999999999
Q ss_pred CCCCCcEEEEEeCCCCC--CChhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhccccc
Q 004604 408 PDKAALSVLIYHGGSRT--KDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVS 485 (743)
Q Consensus 408 ~~~~~l~V~iy~G~~r~--~~~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 485 (743)
| -|+|+.|-|+... ..+....+++|+||+|+++++++.
T Consensus 1055 p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d------------------------------------- 1094 (1549)
T KOG0392|consen 1055 P---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD------------------------------------- 1094 (1549)
T ss_pred c---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH-------------------------------------
Confidence 9 6999999998743 345567788999999999998642
Q ss_pred ccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhC
Q 004604 486 KRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565 (743)
Q Consensus 486 kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~ 565 (743)
.|.++.|.++||||+|-|||.+++.++|++.|++.||++||||||||++.||||||+||+
T Consensus 1095 --------------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLM 1154 (1549)
T KOG0392|consen 1095 --------------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLM 1154 (1549)
T ss_pred --------------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhc
Confidence 267889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHhcccccCC------------chhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCH
Q 004604 566 YDPYAVYKSFYSTIKIPISRN------------SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSK 633 (743)
Q Consensus 566 p~~~~~~~~F~~~f~~pi~~~------------~~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~ 633 (743)
|+++++.+.|...|.+||-.. +.-+++.|++.+-||||||+|+||+. +||||+.+..+|+|+|
T Consensus 1155 PGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~-----DLPpKIIQDyyCeLs~ 1229 (1549)
T KOG0392|consen 1155 PGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLK-----DLPPKIIQDYYCELSP 1229 (1549)
T ss_pred ccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hCChhhhhheeeccCH
Confidence 999999999999999999432 11356789999999999999999987 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccc--HHHHHHHHHHHHHHcCCcccccccCCCccccchH---HHHhcC------
Q 004604 634 EEWAFYKKLESDSLKKFKAFADAGTVNQN--YANILLMLLRLRQACDHPLLVKEYDFDSVGKISG---EMAKRL------ 702 (743)
Q Consensus 634 ~Qr~lY~~l~~~~~~~~~~~~~~g~~~~~--~~~iL~lL~rLRqiC~HP~Lv~~~~~~~~~~~~~---e~~~~l------ 702 (743)
.|+++|+.+.++.........+.+..+.+ ..++++.|.-||++|+||.|+............. .....+
T Consensus 1230 lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hs 1309 (1549)
T KOG0392|consen 1230 LQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHS 1309 (1549)
T ss_pred HHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhc
Confidence 99999999988755444433333333333 7899999999999999999997642211111111 111111
Q ss_pred -CHHHHHHHHHHhhhcccccccc---------------ceeeEeecccchhhccc
Q 004604 703 -PRDMLIDLLSRLETSSAICCVC---------------SVSFYFKRNTSILFLSG 741 (743)
Q Consensus 703 -~~~~l~~Ll~~l~~~~~~c~~C---------------~~~l~f~q~~~~L~~~~ 741 (743)
....+.+|| ..|.+| |+.|||+|+..+||+++
T Consensus 1310 pKl~AL~qLL-------~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVe 1357 (1549)
T KOG0392|consen 1310 PKLSALKQLL-------SECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVE 1357 (1549)
T ss_pred hhHHHHHHHH-------HHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHH
Confidence 112333333 235555 89999999999999874
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.5e-56 Score=536.07 Aligned_cols=337 Identities=26% Similarity=0.459 Sum_probs=272.2
Q ss_pred CCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCC
Q 004604 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (743)
Q Consensus 266 ~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d 345 (743)
.|.. +...|+|||++||+||+.... ++.|||||||||||||+|+|+++.+.+..
T Consensus 162 qP~~-i~~~Lr~YQleGlnWLi~l~~---~g~gGILADEMGLGKTlQaIalL~~L~~~---------------------- 215 (1033)
T PLN03142 162 QPSC-IKGKMRDYQLAGLNWLIRLYE---NGINGILADEMGLGKTLQTISLLGYLHEY---------------------- 215 (1033)
T ss_pred CChH-hccchHHHHHHHHHHHHHHHh---cCCCEEEEeCCCccHHHHHHHHHHHHHHh----------------------
Confidence 4554 467899999999999998764 45789999999999999999999765432
Q ss_pred CCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC
Q 004604 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (743)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~ 425 (743)
++..+|+|||||+|++.||.+||.+|+| .+++++|+|....+
T Consensus 216 -----------------------------------~~~~gp~LIVvP~SlL~nW~~Ei~kw~p---~l~v~~~~G~~~eR 257 (1033)
T PLN03142 216 -----------------------------------RGITGPHMVVAPKSTLGNWMNEIRRFCP---VLRAVKFHGNPEER 257 (1033)
T ss_pred -----------------------------------cCCCCCEEEEeChHHHHHHHHHHHHHCC---CCceEEEeCCHHHH
Confidence 1334779999999999999999999998 79999999986543
Q ss_pred Ch-----hhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCc
Q 004604 426 DP-----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSI 500 (743)
Q Consensus 426 ~~-----~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~ 500 (743)
.. .....+|||||||+++.++.
T Consensus 258 ~~~~~~~~~~~~~dVvITSYe~l~~e~----------------------------------------------------- 284 (1033)
T PLN03142 258 AHQREELLVAGKFDVCVTSFEMAIKEK----------------------------------------------------- 284 (1033)
T ss_pred HHHHHHHhcccCCCcceecHHHHHHHH-----------------------------------------------------
Confidence 21 12357999999999987531
Q ss_pred ccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHhc
Q 004604 501 DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIK 580 (743)
Q Consensus 501 ~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f~ 580 (743)
..|..+.|++|||||||+|||..|+++++++.|.+.+||+|||||++|++.|||+||+||.|+.|++...|...|.
T Consensus 285 ----~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~ 360 (1033)
T PLN03142 285 ----TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ 360 (1033)
T ss_pred ----HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHc
Confidence 1266788999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCchhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 004604 581 IPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVN 660 (743)
Q Consensus 581 ~pi~~~~~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~g~~~ 660 (743)
.+........+.+|+.+|++|||||+|.+|.. .||++.+.+++|+||+.|+++|..++......+. .+
T Consensus 361 ~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~-----~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~----~g--- 428 (1033)
T PLN03142 361 ISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK-----GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN----AG--- 428 (1033)
T ss_pred cccccchHHHHHHHHHHhhHHHhhhhHHHHhh-----hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh----cc---
Confidence 76555556678899999999999999999975 7999999999999999999999999876554332 22
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCccccchHHHHhc-CCHHHHHHHHHHhhhccccccccceeeEeecccchhhc
Q 004604 661 QNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKR-LPRDMLIDLLSRLETSSAICCVCSVSFYFKRNTSILFL 739 (743)
Q Consensus 661 ~~~~~iL~lL~rLRqiC~HP~Lv~~~~~~~~~~~~~e~~~~-l~~~~l~~Ll~~l~~~~~~c~~C~~~l~f~q~~~~L~~ 739 (743)
.....++.++++||++|+||+|+.+................ -....+..||..+.. ..+++|+|+|++.+|++
T Consensus 429 ~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~------~g~KVLIFSQft~~Ldi 502 (1033)
T PLN03142 429 GERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKE------RDSRVLIFSQMTRLLDI 502 (1033)
T ss_pred ccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHh------cCCeEEeehhHHHHHHH
Confidence 23457889999999999999998765432211111111111 011245666766643 35799999999999998
Q ss_pred cc
Q 004604 740 SG 741 (743)
Q Consensus 740 ~~ 741 (743)
+.
T Consensus 503 Le 504 (1033)
T PLN03142 503 LE 504 (1033)
T ss_pred HH
Confidence 75
No 7
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.4e-57 Score=527.64 Aligned_cols=337 Identities=27% Similarity=0.485 Sum_probs=279.5
Q ss_pred cCCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCC
Q 004604 265 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (743)
Q Consensus 265 ~~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (743)
.+|.-+-+..||+||++||.||+-.+... ..||||||||||||||+|+|+.++...
T Consensus 361 ~qp~~~~g~~LRdyQLeGlNWl~~~W~~~---~n~ILADEmgLgktvqti~fl~~l~~~--------------------- 416 (1373)
T KOG0384|consen 361 KQPEYKGGNELRDYQLEGLNWLLYSWYKR---NNCILADEMGLGKTVQTITFLSYLFHS--------------------- 416 (1373)
T ss_pred cCccccccchhhhhhcccchhHHHHHHhc---ccceehhhcCCCcchHHHHHHHHHHHh---------------------
Confidence 45665666789999999999999887643 458999999999999999999876432
Q ss_pred CCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCC
Q 004604 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT 424 (743)
Q Consensus 345 d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~ 424 (743)
....+|+|||||.|++.+|++||..|. .+++++|+|....
T Consensus 417 ------------------------------------~~~~gpflvvvplst~~~W~~ef~~w~----~mn~i~y~g~~~s 456 (1373)
T KOG0384|consen 417 ------------------------------------LQIHGPFLVVVPLSTITAWEREFETWT----DMNVIVYHGNLES 456 (1373)
T ss_pred ------------------------------------hhccCCeEEEeehhhhHHHHHHHHHHh----hhceeeeecchhH
Confidence 134578999999999999999999998 5999999998754
Q ss_pred CChh-----------hhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCC
Q 004604 425 KDPV-----------ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKK 493 (743)
Q Consensus 425 ~~~~-----------~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k 493 (743)
+... ..-+++++||||+++-.+.
T Consensus 457 r~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk---------------------------------------------- 490 (1373)
T KOG0384|consen 457 RQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK---------------------------------------------- 490 (1373)
T ss_pred HHHHHHHHheecCCccccccceeehhhHHHhccH----------------------------------------------
Confidence 4321 1236899999999997642
Q ss_pred CCCCCCcccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHH
Q 004604 494 GNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYK 573 (743)
Q Consensus 494 ~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~ 573 (743)
..|..+.|.++++||||++||..++.+..+..+...||+++||||+||++.|||+|++||.|+.|..+.
T Consensus 491 -----------~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~ 559 (1373)
T KOG0384|consen 491 -----------AELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWD 559 (1373)
T ss_pred -----------hhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHH
Confidence 337899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCchhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Q 004604 574 SFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF 653 (743)
Q Consensus 574 ~F~~~f~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~ 653 (743)
.|...| .......+..|+.+|+|+||||.|+||.+ .||+|.++++.|+||..|+++|..++++....+..
T Consensus 560 ~f~~~~----~~~~e~~~~~L~~~L~P~~lRr~kkdvek-----slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK- 629 (1373)
T KOG0384|consen 560 EFLEEF----DEETEEQVRKLQQILKPFLLRRLKKDVEK-----SLPPKEETILRVELSDLQKQYYKAILTKNFSALTK- 629 (1373)
T ss_pred HHHHhh----cchhHHHHHHHHHHhhHHHHHHHHhhhcc-----CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc-
Confidence 999888 34556778999999999999999999987 89999999999999999999999999987665443
Q ss_pred hhcCCccccHHHHHHHHHHHHHHcCCcccccccCCCccccch----HHHHhcCCH-----HHHHHHHHHhhhcccccccc
Q 004604 654 ADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKIS----GEMAKRLPR-----DMLIDLLSRLETSSAICCVC 724 (743)
Q Consensus 654 ~~~g~~~~~~~~iL~lL~rLRqiC~HP~Lv~~~~~~~~~~~~----~e~~~~l~~-----~~l~~Ll~~l~~~~~~c~~C 724 (743)
|+...+ .++|+++|.||+|||||+|+.+.+..-.+... .+..+.|.. -.++.||-+|..++
T Consensus 630 ---G~~g~~-~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~G------ 699 (1373)
T KOG0384|consen 630 ---GAKGST-PSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGG------ 699 (1373)
T ss_pred ---cCCCCC-chHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCC------
Confidence 333333 78999999999999999999986543322111 122221111 14677888887644
Q ss_pred ceeeEeecccchhhcccC
Q 004604 725 SVSFYFKRNTSILFLSGI 742 (743)
Q Consensus 725 ~~~l~f~q~~~~L~~~~~ 742 (743)
|++|||||+.+||||.+.
T Consensus 700 HrVLIFSQMVRmLDIL~e 717 (1373)
T KOG0384|consen 700 HRVLIFSQMVRMLDILAE 717 (1373)
T ss_pred ceEEEhHHHHHHHHHHHH
Confidence 899999999999999874
No 8
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-57 Score=507.33 Aligned_cols=290 Identities=27% Similarity=0.454 Sum_probs=235.6
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
.++|.+||+.||.||.-.++..+ .||||||||||||+|+|||++++++.
T Consensus 397 ~i~LkdYQlvGvNWL~Llyk~~l---~gILADEMGLGKTiQvIaFlayLkq~---------------------------- 445 (941)
T KOG0389|consen 397 GIQLKDYQLVGVNWLLLLYKKKL---NGILADEMGLGKTIQVIAFLAYLKQI---------------------------- 445 (941)
T ss_pred CCcccchhhhhHHHHHHHHHccc---cceehhhccCcchhHHHHHHHHHHHc----------------------------
Confidence 46799999999999998877544 48999999999999999999988754
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh----
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP---- 427 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~---- 427 (743)
+..+|.|||||+|++.||.+||.+||| .|+|..|||+...+..
T Consensus 446 ------------------------------g~~gpHLVVvPsSTleNWlrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 446 ------------------------------GNPGPHLVVVPSSTLENWLREFAKWCP---SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred ------------------------------CCCCCcEEEecchhHHHHHHHHHHhCC---ceEEEeccCcHHHHHHHHHH
Confidence 335789999999999999999999999 8999999998743311
Q ss_pred --hhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCC
Q 004604 428 --VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCG 505 (743)
Q Consensus 428 --~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~ 505 (743)
..-..|||+||||..+.+.- .+.+
T Consensus 493 i~~~~~~ydVllTTY~la~~~k------------------------------------------------------dDRs 518 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASSK------------------------------------------------------DDRS 518 (941)
T ss_pred HhccCCCccEEEEEeecccCCh------------------------------------------------------HHHH
Confidence 11238999999999987421 1234
Q ss_pred CccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCc-HHHHHHHhccccc
Q 004604 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV-YKSFYSTIKIPIS 584 (743)
Q Consensus 506 ~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~-~~~F~~~f~~pi~ 584 (743)
.|....|++||.||||.+||..|.+++.+..+.|.+|++|||||+||+|.||||||.|+.|..|.. ...+...|..--.
T Consensus 519 flk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~ 598 (941)
T KOG0389|consen 519 FLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKT 598 (941)
T ss_pred HHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCC
Confidence 578889999999999999999999999999999999999999999999999999999999999965 3445555432211
Q ss_pred -CCc-------hhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 004604 585 -RNS-------LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 656 (743)
Q Consensus 585 -~~~-------~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~ 656 (743)
.++ .+.+.+.+.+|+||+|||.|.+|++ .||||+.++.+|+|++.|+.+|..+.+............
T Consensus 599 ~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~-----~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~n 673 (941)
T KOG0389|consen 599 SDGDIENALLSQERISRAKTIMKPFILRRLKSQVLK-----QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKN 673 (941)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccc
Confidence 111 2357788999999999999999998 899999999999999999999999988763322211111
Q ss_pred CCccccHHHHHHHHHHHHHHcCCcccccccCCC
Q 004604 657 GTVNQNYANILLMLLRLRQACDHPLLVKEYDFD 689 (743)
Q Consensus 657 g~~~~~~~~iL~lL~rLRqiC~HP~Lv~~~~~~ 689 (743)
+. ... -..||+|||+++||.|+..+..+
T Consensus 674 -s~---~~~-~~vlmqlRK~AnHPLL~R~~Y~d 701 (941)
T KOG0389|consen 674 -SE---LKS-GNVLMQLRKAANHPLLFRSIYTD 701 (941)
T ss_pred -cc---ccc-chHHHHHHHHhcChhHHHHhccH
Confidence 11 111 44689999999999999876554
No 9
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=7.4e-57 Score=512.69 Aligned_cols=286 Identities=33% Similarity=0.522 Sum_probs=248.8
Q ss_pred CccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCC
Q 004604 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDN 348 (743)
Q Consensus 269 ~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 348 (743)
.++...||.||+.||.||...++..+ .||||||||||||||+|+|++++...
T Consensus 610 sLLrGqLReYQkiGLdWLatLYeknl---NGILADEmGLGKTIQtISllAhLACe------------------------- 661 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKNL---NGILADEMGLGKTIQTISLLAHLACE------------------------- 661 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcc---cceehhhhcccchhHHHHHHHHHHhc-------------------------
Confidence 35678899999999999999988654 59999999999999999999876431
Q ss_pred CCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh-
Q 004604 349 GNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP- 427 (743)
Q Consensus 349 ~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~- 427 (743)
.+.++|.|||||.|++.||+-||++||| .|+++.|+|+.+.+..
T Consensus 662 --------------------------------egnWGPHLIVVpTsviLnWEMElKRwcP---glKILTYyGs~kErkeK 706 (1958)
T KOG0391|consen 662 --------------------------------EGNWGPHLIVVPTSVILNWEMELKRWCP---GLKILTYYGSHKERKEK 706 (1958)
T ss_pred --------------------------------ccCCCCceEEeechhhhhhhHHHhhhCC---cceEeeecCCHHHHHHH
Confidence 2567899999999999999999999999 7999999999865532
Q ss_pred -h---hhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccC
Q 004604 428 -V---ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (743)
Q Consensus 428 -~---~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (743)
. +-..|.|.||+|..+..+..
T Consensus 707 RqgW~kPnaFHVCItSYklv~qd~~------------------------------------------------------- 731 (1958)
T KOG0391|consen 707 RQGWAKPNAFHVCITSYKLVFQDLT------------------------------------------------------- 731 (1958)
T ss_pred hhcccCCCeeEEeehhhHHHHhHHH-------------------------------------------------------
Confidence 2 23468899999999986532
Q ss_pred CCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHhcccc
Q 004604 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI 583 (743)
Q Consensus 504 ~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f~~pi 583 (743)
.|.+..|.++||||||+|||.++++++|+..+++.+|++|||||+||++.|||+|++||.|..|.+...|..+|..|+
T Consensus 732 --AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPl 809 (1958)
T KOG0391|consen 732 --AFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPL 809 (1958)
T ss_pred --HHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcc
Confidence 266778999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCc-------hhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 004604 584 SRNS-------LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 656 (743)
Q Consensus 584 ~~~~-------~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~ 656 (743)
...- ..-+.+|+++|+||+|||+|.||.+ .||.|.|++|+|.||..||.+|+.++.+... ++...
T Consensus 810 tgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEK-----QlpkKyEHvv~CrLSkRQR~LYDDfmsq~~T--KetLk- 881 (1958)
T KOG0391|consen 810 TGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEK-----QLPKKYEHVVKCRLSKRQRALYDDFMSQPGT--KETLK- 881 (1958)
T ss_pred hhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHH-----hcchhhhhheeeehhhhHHHHHHHHhhccch--hhHhh-
Confidence 5432 2346799999999999999999987 9999999999999999999999998765332 22222
Q ss_pred CCccccHHHHHHHHHHHHHHcCCcccccc
Q 004604 657 GTVNQNYANILLMLLRLRQACDHPLLVKE 685 (743)
Q Consensus 657 g~~~~~~~~iL~lL~rLRqiC~HP~Lv~~ 685 (743)
+.++.+++++||+||++||||.|+..
T Consensus 882 ---SGhfmsVlnilmqLrKvCNHPnLfEp 907 (1958)
T KOG0391|consen 882 ---SGHFMSVLNILMQLRKVCNHPNLFEP 907 (1958)
T ss_pred ---cCchhHHHHHHHHHHHHcCCCCcCCC
Confidence 34788999999999999999999864
No 10
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-54 Score=495.78 Aligned_cols=344 Identities=26% Similarity=0.460 Sum_probs=279.5
Q ss_pred ccCCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCC
Q 004604 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (743)
Q Consensus 264 ~~~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (743)
..+|..+.+..|++||+.||.||+...+.. ..||||||||||||||+|++|.++..+
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNn---LNGILADEMGLGKTIQtIsLitYLmE~-------------------- 440 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNN---LNGILADEMGLGKTIQTISLITYLMEH-------------------- 440 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCC---cccccchhcccchHHHHHHHHHHHHHH--------------------
Confidence 457888888899999999999999998854 459999999999999999999987653
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCC
Q 004604 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 423 (743)
Q Consensus 344 ~d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r 423 (743)
+...+|.|||||.|+|.||..||.+|.| ++..++|.|+..
T Consensus 441 -------------------------------------K~~~GP~LvivPlstL~NW~~Ef~kWaP---Sv~~i~YkGtp~ 480 (1157)
T KOG0386|consen 441 -------------------------------------KQMQGPFLIIVPLSTLVNWSSEFPKWAP---SVQKIQYKGTPQ 480 (1157)
T ss_pred -------------------------------------cccCCCeEEeccccccCCchhhcccccc---ceeeeeeeCCHH
Confidence 1345789999999999999999999998 899999999875
Q ss_pred CCCh----hhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCC
Q 004604 424 TKDP----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSS 499 (743)
Q Consensus 424 ~~~~----~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~ 499 (743)
.+.. ...++++|++|||+.+..+-
T Consensus 481 ~R~~l~~qir~gKFnVLlTtyEyiikdk---------------------------------------------------- 508 (1157)
T KOG0386|consen 481 QRSGLTKQQRHGKFNVLLTTYEYIIKDK---------------------------------------------------- 508 (1157)
T ss_pred HHhhHHHHHhcccceeeeeeHHHhcCCH----------------------------------------------------
Confidence 5432 22389999999999987531
Q ss_pred cccCCCCccccCccEEEEcCCcccCChhhHHHHHHH-hcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHH
Q 004604 500 IDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACC-SLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYST 578 (743)
Q Consensus 500 ~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~-~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~ 578 (743)
..|..+.|.++||||+|+|||..++.+..+. ...+.+|++|||||+||++.|||+||+||-|..|.+...|...
T Consensus 509 -----~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqW 583 (1157)
T KOG0386|consen 509 -----ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQW 583 (1157)
T ss_pred -----HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHH
Confidence 2378899999999999999999999999998 5699999999999999999999999999999999999999999
Q ss_pred hcccccCCch----------hHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHH
Q 004604 579 IKIPISRNSL----------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLK 648 (743)
Q Consensus 579 f~~pi~~~~~----------~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~ 648 (743)
|..|+...+. --+.+|+.+|+||+|||.|++|.. .||+|++.++.|.||..|+.+|..+.+...-
T Consensus 584 FN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~-----~LPdKve~viKC~mSalQq~lY~~m~~~g~l 658 (1157)
T KOG0386|consen 584 FNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ-----ELPDKVEDVIKCDMSALQQSLYKQMQNKGQL 658 (1157)
T ss_pred hhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh-----hCchhhhHhhheehhhhhHhhhHHHHhCCCC
Confidence 9999866542 135799999999999999999987 8999999999999999999999987543221
Q ss_pred HHHHHhhcCCccccHHHHHHHHHHHHHHcCCcccccccCCCc--cccchHHHHh-cCCHHHHHHHHHHhhhccccccccc
Q 004604 649 KFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDS--VGKISGEMAK-RLPRDMLIDLLSRLETSSAICCVCS 725 (743)
Q Consensus 649 ~~~~~~~~g~~~~~~~~iL~lL~rLRqiC~HP~Lv~~~~~~~--~~~~~~e~~~-~l~~~~l~~Ll~~l~~~~~~c~~C~ 725 (743)
- .+.......+..+.+.++.||+|||||+|+...+... .-.. .++.+ .=..+.++++|..|.+ ..|
T Consensus 659 ~----~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~-~dL~R~sGKfELLDRiLPKLka------tgH 727 (1157)
T KOG0386|consen 659 L----KDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI-KDLVRVSGKFELLDRILPKLKA------TGH 727 (1157)
T ss_pred C----cCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh-hHHHHhccHHHHHHhhhHHHHh------cCc
Confidence 1 1111223445678889999999999999995432211 1111 11111 1123456666666654 569
Q ss_pred eeeEeecccchhhcccCC
Q 004604 726 VSFYFKRNTSILFLSGIF 743 (743)
Q Consensus 726 ~~l~f~q~~~~L~~~~~~ 743 (743)
++|.|+|+|+|++++++|
T Consensus 728 RVLlF~qMTrlmdimEdy 745 (1157)
T KOG0386|consen 728 RVLLFSQMTRLMDILEDY 745 (1157)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 999999999999999875
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-52 Score=459.90 Aligned_cols=280 Identities=30% Similarity=0.491 Sum_probs=242.3
Q ss_pred CccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCC
Q 004604 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDN 348 (743)
Q Consensus 269 ~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 348 (743)
.++.++|+.||+.||.|+...+..+ -.||||||||||||+|+|++++++...
T Consensus 562 kil~ctLKEYQlkGLnWLvnlYdqG---iNGILADeMGLGKTVQsisvlAhLaE~------------------------- 613 (1185)
T KOG0388|consen 562 KILKCTLKEYQLKGLNWLVNLYDQG---INGILADEMGLGKTVQSISVLAHLAET------------------------- 613 (1185)
T ss_pred hhhhhhhHHHhhccHHHHHHHHHcc---ccceehhhhccchhHHHHHHHHHHHHh-------------------------
Confidence 4568899999999999999888754 459999999999999999999876432
Q ss_pred CCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh-
Q 004604 349 GNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP- 427 (743)
Q Consensus 349 ~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~- 427 (743)
..-++|+|||+|+|+|.||++||.+|+| .++++.|.|+...+..
T Consensus 614 --------------------------------~nIwGPFLVVtpaStL~NWaqEisrFlP---~~k~lpywGs~~eRkiL 658 (1185)
T KOG0388|consen 614 --------------------------------HNIWGPFLVVTPASTLHNWAQEISRFLP---SFKVLPYWGSPSERKIL 658 (1185)
T ss_pred --------------------------------ccCCCceEEeehHHHHhHHHHHHHHhCc---cceeecCcCChhhhHHH
Confidence 1346889999999999999999999999 8999999998755421
Q ss_pred ----------hhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCC
Q 004604 428 ----------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 497 (743)
Q Consensus 428 ----------~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~ 497 (743)
...+.++||||||.++..+-
T Consensus 659 rKfw~rKnmY~rna~fhVviTSYQlvVtDe-------------------------------------------------- 688 (1185)
T KOG0388|consen 659 RKFWNRKNMYRRNAPFHVVITSYQLVVTDE-------------------------------------------------- 688 (1185)
T ss_pred HHhcchhhhhccCCCceEEEEeeeeeechH--------------------------------------------------
Confidence 13456899999999886531
Q ss_pred CCcccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHH
Q 004604 498 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYS 577 (743)
Q Consensus 498 ~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~ 577 (743)
..|.++.|.++||||||.||...|.+++.+..++|+.|++||||||||+..|||+||+|+.|-.|++..+|.+
T Consensus 689 -------ky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFse 761 (1185)
T KOG0388|consen 689 -------KYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSE 761 (1185)
T ss_pred -------HHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHH
Confidence 1277899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCC-------chhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 004604 578 TIKIPISRN-------SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 650 (743)
Q Consensus 578 ~f~~pi~~~-------~~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~ 650 (743)
.|.+-|+.. ..+.+.+|+.+|+||||||.|++|.. +|-.|++..|+|+||..|+.+|+.+......
T Consensus 762 WFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~s-----ELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~-- 834 (1185)
T KOG0388|consen 762 WFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVIS-----ELGQKTEIDVYCDLSYRQKVLYQEIKRSISS-- 834 (1185)
T ss_pred HHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHH-----HhccceEEEEEechhHHHHHHHHHHHHHhhH--
Confidence 998887643 34678999999999999999999976 8999999999999999999999988654431
Q ss_pred HHHhhcCCccccHHHHHHHHHHHHHHcCCcccccccCC
Q 004604 651 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDF 688 (743)
Q Consensus 651 ~~~~~~g~~~~~~~~iL~lL~rLRqiC~HP~Lv~~~~~ 688 (743)
..+..++++||++||||.|+...+.
T Consensus 835 -------------~E~~~~vmQlrKVCNHPdLFer~e~ 859 (1185)
T KOG0388|consen 835 -------------MEMENLVMQLRKVCNHPDLFERLEP 859 (1185)
T ss_pred -------------HHHHHHHHHHHHhcCChHHHhhcCC
Confidence 2333588999999999999976543
No 12
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3e-50 Score=465.34 Aligned_cols=356 Identities=47% Similarity=0.733 Sum_probs=300.4
Q ss_pred hHHHHHHHHHhcCCCCccccCCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcc
Q 004604 246 ERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQS 325 (743)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~ 325 (743)
.+.+|.++...+.+.+.+...|.+.+.++ |++.+.||+........++|||||||||||||+++|++++..+....
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~ 181 (674)
T KOG1001|consen 106 NLPIFKAAKWEIILYKANKISPKNTLRFP----LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSK 181 (674)
T ss_pred cchhhhhhhhhhhhhhhhccCCcccccCC----HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCc
Confidence 44567766666666666666676655555 66667777766666677899999999999999999999986543200
Q ss_pred cchhhhccccccccccCCCCCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHH
Q 004604 326 KSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELED 405 (743)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k 405 (743)
+ .......+.+|||||.+++.||..|+ .
T Consensus 182 ------------~---------------------------------------~~~~~~~kttLivcp~s~~~qW~~el-e 209 (674)
T KOG1001|consen 182 ------------E---------------------------------------EDRQKEFKTTLIVCPTSLLTQWKTEL-E 209 (674)
T ss_pred ------------c---------------------------------------hhhccccCceeEecchHHHHHHHHHH-h
Confidence 0 00124567899999999999999999 5
Q ss_pred hCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhccccc
Q 004604 406 KVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVS 485 (743)
Q Consensus 406 ~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 485 (743)
...+...+.|++||| |.++..++..||||||||+++++
T Consensus 210 k~~~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~---------------------------------------- 247 (674)
T KOG1001|consen 210 KVTEEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN---------------------------------------- 247 (674)
T ss_pred ccCCccceEEEEecc--cccccchhcCCceEEeeHHHhhc----------------------------------------
Confidence 555556999999999 88999999999999999999873
Q ss_pred ccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhC
Q 004604 486 KRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565 (743)
Q Consensus 486 kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~ 565 (743)
++|..+.|.|||+||||.|+|.+++.+++|+.|.+.+||||||||+||+++|||++++|+.
T Consensus 248 -------------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~ 308 (674)
T KOG1001|consen 248 -------------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLE 308 (674)
T ss_pred -------------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhh
Confidence 2477899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHhcccccCCc-hhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHH
Q 004604 566 YDPYAVYKSFYSTIKIPISRNS-LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 644 (743)
Q Consensus 566 p~~~~~~~~F~~~f~~pi~~~~-~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~ 644 (743)
.++|..+..|...+..|+..+. .+++++++.+|+.+|+||||....+|+|++.|||++..++.++++..|+.+|..+..
T Consensus 309 ~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~ 388 (674)
T KOG1001|consen 309 IHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKA 388 (674)
T ss_pred cCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhh
Confidence 9999999999999999999988 788999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCccccHHHHHHHHHHHHHHcCCcccccccCCCccccchHHHHhcCCHHHHHHHHHHhhhcccccccc
Q 004604 645 DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVC 724 (743)
Q Consensus 645 ~~~~~~~~~~~~g~~~~~~~~iL~lL~rLRqiC~HP~Lv~~~~~~~~~~~~~e~~~~l~~~~l~~Ll~~l~~~~~~c~~C 724 (743)
..+.++..+...|++..+|+.++.+++||||+||||.|+...........+.. .....++.++..+ ..|.+|
T Consensus 389 ~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~-------~~~~~~i~~l~~~-~~c~ic 460 (674)
T KOG1001|consen 389 NSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAA-------ALIIRLIVDLSVS-HWCHIC 460 (674)
T ss_pred hhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccc-------hHHHHHHHHHhhc-cccccc
Confidence 99999999999999999999999999999999999999975433322111111 1122266667656 888888
Q ss_pred ce
Q 004604 725 SV 726 (743)
Q Consensus 725 ~~ 726 (743)
.+
T Consensus 461 ~~ 462 (674)
T KOG1001|consen 461 CD 462 (674)
T ss_pred cc
Confidence 77
No 13
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=4.5e-50 Score=427.24 Aligned_cols=291 Identities=40% Similarity=0.643 Sum_probs=228.1
Q ss_pred hhHHHHHHHHHhh------hccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 278 HQKIALAWMLQKE------TRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 278 hQ~~gl~wml~~e------~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
||++||.||+.++ ......+|||||||||||||+++|+++.......
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~--------------------------- 53 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEF--------------------------- 53 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCC---------------------------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcc---------------------------
Confidence 8999999999998 2223468999999999999999999997543320
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCC--CCCChhh
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS--RTKDPVE 429 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~--r~~~~~~ 429 (743)
.....+++|||||.+++.||..||.+|+++. .+++++|+|.. .......
T Consensus 54 ----------------------------~~~~~~~~LIv~P~~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 104 (299)
T PF00176_consen 54 ----------------------------PQRGEKKTLIVVPSSLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSKNQ 104 (299)
T ss_dssp ----------------------------TTSS-S-EEEEE-TTTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSSS
T ss_pred ----------------------------ccccccceeEeeccchhhhhhhhhccccccc-cccccccccccccccccccc
Confidence 0012245999999999999999999999643 67999999987 2333445
Q ss_pred hccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccc
Q 004604 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (743)
Q Consensus 430 l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (743)
...++||||||+.+...... .....+..
T Consensus 105 ~~~~~vvi~ty~~~~~~~~~----------------------------------------------------~~~~~l~~ 132 (299)
T PF00176_consen 105 LPKYDVVITTYETLRKARKK----------------------------------------------------KDKEDLKQ 132 (299)
T ss_dssp CCCSSEEEEEHHHHH--TST----------------------------------------------------HTTHHHHT
T ss_pred cccceeeecccccccccccc----------------------------------------------------cccccccc
Confidence 67899999999999821000 01122566
Q ss_pred cCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHhcccccCCchh
Q 004604 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLH 589 (743)
Q Consensus 510 i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f~~pi~~~~~~ 589 (743)
+.|++||+||||.+||..+..++++..|.+.+||+|||||++|++.|||++++||.|+.+.+...|.+.|..+.......
T Consensus 133 ~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~ 212 (299)
T PF00176_consen 133 IKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYE 212 (299)
T ss_dssp SEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHH
T ss_pred ccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999987664444556
Q ss_pred HHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHH
Q 004604 590 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669 (743)
Q Consensus 590 ~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~l 669 (743)
...+|+.+++.+++||+++++.. .||++.+.++.|+|+++|+++|+.+....+..++... .....+...++..
T Consensus 213 ~~~~L~~~l~~~~~r~~~~d~~~-----~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 285 (299)
T PF00176_consen 213 NIERLRELLSEFMIRRTKKDVEK-----ELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSLLQI 285 (299)
T ss_dssp HHHHHHHHHCCCEECHCGGGGCT-----TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHHHHH
T ss_pred cccccccccchhhhhhhcccccc-----cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHH
Confidence 77899999999999999999843 7999999999999999999999988877665444322 2345677899999
Q ss_pred HHHHHHHcCCcccc
Q 004604 670 LLRLRQACDHPLLV 683 (743)
Q Consensus 670 L~rLRqiC~HP~Lv 683 (743)
+++|||+||||.||
T Consensus 286 ~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 286 LKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHHH-THHC
T ss_pred HHHHHHHhCCcccC
Confidence 99999999999986
No 14
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=5.9e-44 Score=410.91 Aligned_cols=291 Identities=24% Similarity=0.370 Sum_probs=237.6
Q ss_pred CCCccccccchhhHHHHHHHHHhhhccc---cccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCC
Q 004604 267 PDGLLSVNLLKHQKIALAWMLQKETRSL---HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (743)
Q Consensus 267 P~~~~~~~L~phQ~~gl~wml~~e~~~~---~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (743)
+...++-.|+|||++|+.||+....+.. ...|||+||+||+|||+|+|+||..+.+...
T Consensus 231 ~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P------------------ 292 (776)
T KOG0390|consen 231 IDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFP------------------ 292 (776)
T ss_pred ecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCc------------------
Confidence 3344577899999999999998876542 5689999999999999999999987654300
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCC
Q 004604 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 423 (743)
Q Consensus 344 ~d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r 423 (743)
. ........|||||.+||.+|++||.+|.... .+..+.++|...
T Consensus 293 --------------------------~---------~~~~~~k~lVV~P~sLv~nWkkEF~KWl~~~-~i~~l~~~~~~~ 336 (776)
T KOG0390|consen 293 --------------------------Q---------AKPLINKPLVVAPSSLVNNWKKEFGKWLGNH-RINPLDFYSTKK 336 (776)
T ss_pred --------------------------C---------ccccccccEEEccHHHHHHHHHHHHHhcccc-ccceeeeecccc
Confidence 0 0013366899999999999999999998753 788888888876
Q ss_pred CCC---------hhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCC
Q 004604 424 TKD---------PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKG 494 (743)
Q Consensus 424 ~~~---------~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~ 494 (743)
... ....-.+-|.|.+|++++..+.
T Consensus 337 ~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~---------------------------------------------- 370 (776)
T KOG0390|consen 337 SSWIKLKSILFLGYKQFTTPVLIISYETASDYCR---------------------------------------------- 370 (776)
T ss_pred hhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH----------------------------------------------
Confidence 410 0112345789999999874321
Q ss_pred CCCCCcccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHH
Q 004604 495 NVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKS 574 (743)
Q Consensus 495 ~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~ 574 (743)
.+....+++||+||||+.||..+.+.+++..|++++|++|||||+||++.|+|++|+|++|+.+++...
T Consensus 371 -----------~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~s 439 (776)
T KOG0390|consen 371 -----------KILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISS 439 (776)
T ss_pred -----------HHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHH
Confidence 145567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCch-----------hHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHH
Q 004604 575 FYSTIKIPISRNSL-----------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLE 643 (743)
Q Consensus 575 F~~~f~~pi~~~~~-----------~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~ 643 (743)
|.+.+..|+.++.. ..+++|+.++..|++||+-+.+.+ .||++.+++|.|.+++.|+++|..+.
T Consensus 440 f~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k-----~LP~k~e~vv~~n~t~~Q~~~~~~l~ 514 (776)
T KOG0390|consen 440 FKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLK-----YLPGKYEYVVFCNPTPIQKELYKKLL 514 (776)
T ss_pred HHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhh-----hCCCceeEEEEeCCcHHHHHHHHHHH
Confidence 99999999976432 236789999999999999976665 89999999999999999999999997
Q ss_pred HHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHcCCccccc
Q 004604 644 SDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684 (743)
Q Consensus 644 ~~~~~~~~~~~~~g~~~~~~~~iL~lL~rLRqiC~HP~Lv~ 684 (743)
+.. .. ..+. ...|..++.|.++|+||.|+.
T Consensus 515 ~~~-~~-~~~~---------~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 515 DSM-KM-RTLK---------GYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHH-Hh-hhhh---------cchhhHHHHHHHHhcCHHhhc
Confidence 754 11 1110 126888899999999999995
No 15
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=6e-43 Score=394.04 Aligned_cols=304 Identities=24% Similarity=0.300 Sum_probs=233.4
Q ss_pred cccccchhhHHHHHHHHHhhh------ccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCC
Q 004604 271 LSVNLLKHQKIALAWMLQKET------RSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (743)
Q Consensus 271 ~~~~L~phQ~~gl~wml~~e~------~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (743)
+...|+|||..||.|||..-. ....+.|||||+-||||||+|+|+|+......
T Consensus 665 lv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c--------------------- 723 (1567)
T KOG1015|consen 665 LVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLC--------------------- 723 (1567)
T ss_pred HHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHh---------------------
Confidence 356799999999999997532 23457899999999999999999999764332
Q ss_pred CCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCC-C--CCcEEEEEeCC
Q 004604 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPD-K--AALSVLIYHGG 421 (743)
Q Consensus 345 d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~-~--~~l~V~iy~G~ 421 (743)
.+...++.|||||.+++.||.+||++|.+. . ..+.|+.+..-
T Consensus 724 -----------------------------------~klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~v 768 (1567)
T KOG1015|consen 724 -----------------------------------DKLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATV 768 (1567)
T ss_pred -----------------------------------hccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhc
Confidence 012346799999999999999999999884 1 24555554444
Q ss_pred CCCCCh-----hhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCC
Q 004604 422 SRTKDP-----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNV 496 (743)
Q Consensus 422 ~r~~~~-----~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~ 496 (743)
.+..+. .+..+..|.|+.|+.+++.-.. ++ -+.+|-..
T Consensus 769 kr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~g-----------r~------------vk~rk~ke-------------- 811 (1567)
T KOG1015|consen 769 KRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQG-----------RN------------VKSRKLKE-------------- 811 (1567)
T ss_pred cChHHHHHHHHHHHhcCCEEEEehHHHHHHhcc-----------cc------------hhhhHHHH--------------
Confidence 442222 2335668999999999863210 00 00000000
Q ss_pred CCCcccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHH
Q 004604 497 NSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFY 576 (743)
Q Consensus 497 ~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~ 576 (743)
.....|..-++|+|||||||.|||..|.+++|+..+++++||||||||+||+|.|+|.|++|++|+++++..+|+
T Consensus 812 -----~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~Efr 886 (1567)
T KOG1015|consen 812 -----IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFR 886 (1567)
T ss_pred -----HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHH
Confidence 001125667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCchh------------HHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHH
Q 004604 577 STIKIPISRNSLH------------GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 644 (743)
Q Consensus 577 ~~f~~pi~~~~~~------------~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~ 644 (743)
+.|.+||.++... ...-|..+|+.|+-|+-..-+.. .||||+++||.|.||+.|.++|+.+++
T Consensus 887 NRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk-----~LPPK~eyVi~vrltelQ~~LYq~yL~ 961 (1567)
T KOG1015|consen 887 NRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTK-----FLPPKHEYVIAVRLTELQCKLYQYYLD 961 (1567)
T ss_pred HhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----cCCCceeEEEEEeccHHHHHHHHHHHh
Confidence 9999999988532 23458889999998887776655 899999999999999999999999877
Q ss_pred HHHHHHHHHhhcCCc---cccHHHHHHHHHHHHHHcCCcccc
Q 004604 645 DSLKKFKAFADAGTV---NQNYANILLMLLRLRQACDHPLLV 683 (743)
Q Consensus 645 ~~~~~~~~~~~~g~~---~~~~~~iL~lL~rLRqiC~HP~Lv 683 (743)
. ... ..+.. .....++|.....|++|++||+.+
T Consensus 962 h-~~~-----~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~l 997 (1567)
T KOG1015|consen 962 H-LTG-----VGNDSEGGRGAGARLFQDFQMLSRIWTHPWCL 997 (1567)
T ss_pred h-ccc-----cCCccccccchhhhHHHHHHHHHHHhcCCCce
Confidence 2 211 11111 114578899999999999999865
No 16
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.9e-42 Score=415.15 Aligned_cols=345 Identities=33% Similarity=0.489 Sum_probs=265.0
Q ss_pred ccccccchhhHHHHHHHHH-hhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCC
Q 004604 270 LLSVNLLKHQKIALAWMLQ-KETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDN 348 (743)
Q Consensus 270 ~~~~~L~phQ~~gl~wml~-~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 348 (743)
.+...|++||..|+.||.. ... ...|||||||||||||+|+|+++......
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~---~~~~~ilaD~mglGKTiq~i~~l~~~~~~------------------------- 385 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRS---NLLGGILADDMGLGKTVQTIALLLSLLES------------------------- 385 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHh---ccCCCcccccccchhHHHHHHHHHhhhhc-------------------------
Confidence 3457799999999999994 433 35799999999999999999999752211
Q ss_pred CCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcE-EEEEeCCCCC---
Q 004604 349 GNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALS-VLIYHGGSRT--- 424 (743)
Q Consensus 349 ~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~-V~iy~G~~r~--- 424 (743)
.....++.|||||.+++.||.+|+.+|.+ .++ +.+++|....
T Consensus 386 -------------------------------~~~~~~~~liv~p~s~~~nw~~e~~k~~~---~~~~~~~~~g~~~~~~~ 431 (866)
T COG0553 386 -------------------------------IKVYLGPALIVVPASLLSNWKREFEKFAP---DLRLVLVYHGEKSELDK 431 (866)
T ss_pred -------------------------------ccCCCCCeEEEecHHHHHHHHHHHhhhCc---cccceeeeeCCcccccH
Confidence 00114679999999999999999999988 577 9999998862
Q ss_pred --CChhhhcc------CCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCC
Q 004604 425 --KDPVELAK------YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNV 496 (743)
Q Consensus 425 --~~~~~l~~------~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~ 496 (743)
.....+.+ +|+++|||+.+....
T Consensus 432 ~~~~~~~~~~~~~~~~~~v~itty~~l~~~~------------------------------------------------- 462 (866)
T COG0553 432 KREALRDLLKLHLVIIFDVVITTYELLRRFL------------------------------------------------- 462 (866)
T ss_pred HHHHHHHHhhhcccceeeEEechHHHHHHhh-------------------------------------------------
Confidence 22233333 899999999998621
Q ss_pred CCCcccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHH-hhCCCCCC-cHHH
Q 004604 497 NSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR-FLKYDPYA-VYKS 574 (743)
Q Consensus 497 ~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~-FL~p~~~~-~~~~ 574 (743)
.+...+..+.|+++|+||||+|||..+..+++++.+.+.+||+|||||++|++.|||++++ |+.|+.++ ....
T Consensus 463 -----~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~ 537 (866)
T COG0553 463 -----VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAI 537 (866)
T ss_pred -----hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHH
Confidence 0112377889999999999999999999999999999999999999999999999999999 99999999 6699
Q ss_pred HHHHhcccccCCch--------hHHHHHHHhhhceEEEEecCc--ccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHH
Q 004604 575 FYSTIKIPISRNSL--------HGYKKLQAVLRAIMLRRTKGT--FIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 644 (743)
Q Consensus 575 F~~~f~~pi~~~~~--------~~~~~L~~lL~~~mLRRtK~d--v~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~ 644 (743)
|...|..|+..... ....+|+.++++|+|||+|.+ +.. .||++.+.++.|+|++.|+++|+.+..
T Consensus 538 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~-----~Lp~k~e~~~~~~l~~~q~~~y~~~~~ 612 (866)
T COG0553 538 FTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLK-----ELPPKIEKVLECELSEEQRELYEALLE 612 (866)
T ss_pred HHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHH-----hCChhhhhhhhhcccHHHHHHHHHHHH
Confidence 99999999866543 344558899999999999999 654 899999999999999999999999998
Q ss_pred ---HHHHHHHHHhhcCCc--cc--cHHHHHHHHHHHHHHcCCccccccc-CCCccccchH------------HHH-hc-C
Q 004604 645 ---DSLKKFKAFADAGTV--NQ--NYANILLMLLRLRQACDHPLLVKEY-DFDSVGKISG------------EMA-KR-L 702 (743)
Q Consensus 645 ---~~~~~~~~~~~~g~~--~~--~~~~iL~lL~rLRqiC~HP~Lv~~~-~~~~~~~~~~------------e~~-~~-l 702 (743)
.....+......+.. .. ...+++..+++||++|+||.++... .......... ... .. -
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 692 (866)
T COG0553 613 GAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKG 692 (866)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccch
Confidence 555555544332210 01 3678999999999999999999865 2111100000 000 00 1
Q ss_pred CHHHHHHHH-HHhhhcccccccc--ceeeEeecccchhhccc
Q 004604 703 PRDMLIDLL-SRLETSSAICCVC--SVSFYFKRNTSILFLSG 741 (743)
Q Consensus 703 ~~~~l~~Ll-~~l~~~~~~c~~C--~~~l~f~q~~~~L~~~~ 741 (743)
....+.+++ ..+.. .. ++.++|+|++.+|++++
T Consensus 693 k~~~l~~ll~~~~~~------~~~~~kvlifsq~t~~l~il~ 728 (866)
T COG0553 693 KLQALDELLLDKLLE------EGHYHKVLIFSQFTPVLDLLE 728 (866)
T ss_pred HHHHHHHHHHHHHHh------hcccccEEEEeCcHHHHHHHH
Confidence 122344555 33221 22 59999999999999875
No 17
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=6.1e-40 Score=363.71 Aligned_cols=314 Identities=23% Similarity=0.302 Sum_probs=238.5
Q ss_pred ccccchhhHHHHHHHHHhhhc------cccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCC
Q 004604 272 SVNLLKHQKIALAWMLQKETR------SLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~------~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d 345 (743)
.--|+|||+-|++||+..--. ...++|||||+.||||||+|+|+|+-...++
T Consensus 252 a~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRh---------------------- 309 (1387)
T KOG1016|consen 252 AHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRH---------------------- 309 (1387)
T ss_pred HhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhc----------------------
Confidence 445999999999999764321 1247899999999999999999998655443
Q ss_pred CCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCC--------CCCcEEEE
Q 004604 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPD--------KAALSVLI 417 (743)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~--------~~~l~V~i 417 (743)
.+++++|+|+|..+|.||..||..|+|. ...+.|++
T Consensus 310 ------------------------------------T~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~ 353 (1387)
T KOG1016|consen 310 ------------------------------------TKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFL 353 (1387)
T ss_pred ------------------------------------CccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEE
Confidence 4568899999999999999999999985 12456666
Q ss_pred EeCCCCCCCh------hhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCC
Q 004604 418 YHGGSRTKDP------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKG 491 (743)
Q Consensus 418 y~G~~r~~~~------~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~ 491 (743)
+....++-+. .+.....|+++.|++++-..-+ +-+++. +.++.
T Consensus 354 LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk-----------------------------~~~~~g--rpkkt 402 (1387)
T KOG1016|consen 354 LNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILK-----------------------------TLPKKG--RPKKT 402 (1387)
T ss_pred ecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHh-----------------------------cccccC--Ccccc
Confidence 6655544321 1235678999999998742211 111100 11111
Q ss_pred CCCCCCCCccc------------CCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHH
Q 004604 492 KKGNVNSSIDY------------GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYS 559 (743)
Q Consensus 492 ~k~~~~~~~~~------------~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~s 559 (743)
+|+.....++. -...|.+-+.|+|||||+|+|||..+.++.|++.+++++|++|||-|+||+|-|+|.
T Consensus 403 ~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwC 482 (1387)
T KOG1016|consen 403 LKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWC 482 (1387)
T ss_pred ccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhh
Confidence 11111111111 224466778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCcHHHHHHHhcccccCCch------------hHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEE
Q 004604 560 YFRFLKYDPYAVYKSFYSTIKIPISRNSL------------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLT 627 (743)
Q Consensus 560 Ll~FL~p~~~~~~~~F~~~f~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv 627 (743)
|++|++|+++++.++|.+.|++||.++.. .....|+.+|..|+-||+..-+. +.||.|.|+++
T Consensus 483 MVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk-----~~LP~k~EyVi 557 (1387)
T KOG1016|consen 483 MVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK-----KILPEKKEYVI 557 (1387)
T ss_pred hheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh-----hhcccccceEE
Confidence 99999999999999999999999988753 12346889999999999987654 48999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHcCCcccccc
Q 004604 628 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE 685 (743)
Q Consensus 628 ~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~lL~rLRqiC~HP~Lv~~ 685 (743)
.|.+|..||++|..+.....+.+. +......+.|.++.-..+|+|||+++..
T Consensus 558 Lvr~s~iQR~LY~~Fm~d~~r~~~------~~~~~~~NPLkAF~vCcKIWNHPDVLY~ 609 (1387)
T KOG1016|consen 558 LVRKSQIQRQLYRNFMLDAKREIA------ANNDAVFNPLKAFSVCCKIWNHPDVLYR 609 (1387)
T ss_pred EEeHHHHHHHHHHHHHHHHHHhhc------cccccccChHHHHHHHHHhcCChHHHHH
Confidence 999999999999998754443221 2112224778888899999999998754
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=7.5e-38 Score=357.84 Aligned_cols=351 Identities=24% Similarity=0.334 Sum_probs=255.3
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
..|.+||.+|++|+...+..+ .-+|||||||||||+++|+++......
T Consensus 294 g~L~~~qleGln~L~~~ws~~---~~~ilADEmgLgktVqsi~fl~sl~~~----------------------------- 341 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPG---VDAILADEMGLGKTVQSIVFLYSLPKE----------------------------- 341 (696)
T ss_pred ccccccchhhhhhhhcccccC---CCcccchhhcCCceeeEEEEEeecccc-----------------------------
Confidence 579999999999999887644 448999999999999999998543211
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhcc
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~ 432 (743)
....++.||++|.+.+-+|..|+..|.+ .+.|..|+|....+.......
T Consensus 342 ----------------------------~~~~~P~Lv~ap~sT~~nwe~e~~~wap---~~~vv~~~G~~k~r~iirepe 390 (696)
T KOG0383|consen 342 ----------------------------IHSPGPPLVVAPLSTIVNWEREFELWAP---SFYVVPYPGTAKSRAIIREPE 390 (696)
T ss_pred ----------------------------cCCCCCceeeccCccccCCCCchhccCC---CcccccCCCCccchhhhhccc
Confidence 1223678999999999999999999998 688889999875432211100
Q ss_pred C---C-EEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcc
Q 004604 433 Y---D-VVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLA 508 (743)
Q Consensus 433 ~---D-VVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~ 508 (743)
+ | -+.++-.+.. .+. ....+....-...+.++.+...+.
T Consensus 391 ~s~ed~~~~~~~~i~~---------------------------------~~~----~s~~k~~vl~~s~~~~~~~~~il~ 433 (696)
T KOG0383|consen 391 FSFEDSSIKSSPKISE---------------------------------MKT----ESSAKFHVLLPSYETIEIDQSILF 433 (696)
T ss_pred ccccccccccCCcccc---------------------------------ccc----hhhcccccCCCchhhcccCHHHHh
Confidence 0 0 0000000000 000 000011111222333444556689
Q ss_pred ccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHhcccccCCch
Q 004604 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL 588 (743)
Q Consensus 509 ~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f~~pi~~~~~ 588 (743)
.+.|..+|+||+|++||..+..++.+......++++|||||.||++.||+++|+||.++.|.+..+|.+.|..- ...
T Consensus 434 ~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~---~~~ 510 (696)
T KOG0383|consen 434 SVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI---SCE 510 (696)
T ss_pred hhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---hHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532 234
Q ss_pred hHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHH
Q 004604 589 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL 668 (743)
Q Consensus 589 ~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~ 668 (743)
...++|+.++.++||||.|.||++ ..|+|++-++.+.|++-|+++|+.++.+.-..+.+ ..+...+++
T Consensus 511 ~~~~~l~~l~~p~~lrr~k~d~l~-----~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-------~~~~~s~~n 578 (696)
T KOG0383|consen 511 EQIKKLHLLLCPHMLRRLKLDVLK-----PMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-------GVHQYSLLN 578 (696)
T ss_pred HHHHhhccccCchhhhhhhhhhcc-----CCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-------cchhHHHHH
Confidence 567899999999999999999998 79999999999999999999999998876655543 223456788
Q ss_pred HHHHHHHHcCCcccccccCCCccccchHHHHhcCC--HHHHHHHHHHhhhccccccccceeeEeecccchhhcccCC
Q 004604 669 MLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLP--RDMLIDLLSRLETSSAICCVCSVSFYFKRNTSILFLSGIF 743 (743)
Q Consensus 669 lL~rLRqiC~HP~Lv~~~~~~~~~~~~~e~~~~l~--~~~l~~Ll~~l~~~~~~c~~C~~~l~f~q~~~~L~~~~~~ 743 (743)
++|.|||.|+||+|+...+.. .... ......+. ..++.-|+.++. +.-...|++++|+|++.+|||++.|
T Consensus 579 ~~mel~K~~~hpy~~~~~e~~-~~~~-~~~~~~l~k~~~k~~~l~~~~~---~l~~~ghrvl~~~q~~~~ldlled~ 650 (696)
T KOG0383|consen 579 IVMELRKQCNHPYLSPLEEPL-EENG-EYLGSALIKASGKLTLLLKMLK---KLKSSGHRVLIFSQMIHMLDLLEDY 650 (696)
T ss_pred HHHHHHHhhcCcccCcccccc-ccch-HHHHHHHHHHHHHHHHHHHHHH---HHHhcchhhHHHHHHHHHHHHhHHH
Confidence 999999999999999872211 1111 11111111 112222222222 2233568999999999999998764
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=2.1e-35 Score=345.11 Aligned_cols=371 Identities=32% Similarity=0.507 Sum_probs=254.9
Q ss_pred ccccchhhHHHHHHHHHhhhcc--------------------------------------ccccceEEEccCCCchHHHH
Q 004604 272 SVNLLKHQKIALAWMLQKETRS--------------------------------------LHCLGGILADDQGLGKTISI 313 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~--------------------------------------~~~~GGILADdMGLGKTiqa 313 (743)
.-.+++||...+.||.+++... ....||.+||+||||||++-
T Consensus 243 ~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l~~e~l~~~~t~~de~gl~k~~E~ 322 (1394)
T KOG0298|consen 243 QSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEELPKESLSPGGTLADEMGLGKTVEF 322 (1394)
T ss_pred hhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccchhccCCCcchHHHHhhhHHHHHH
Confidence 4569999999999999887620 12578999999999999999
Q ss_pred HHHHHHHhhhcccchhhh-------------c----cccccccccCCCCCCCCCcc--cccc---ccc----CC-CCCCC
Q 004604 314 IALIQMQRSLQSKSKTEV-------------L----GNQKTEALNLDDDDDNGNAG--LDKV---KET----GE-SDDIK 366 (743)
Q Consensus 314 IAli~~~~~~~~~~~~~~-------------~----~~~~~~~~~~~~d~~~~~~~--~~~~---k~~----~~-~~~~~ 366 (743)
+|++..++..+.-..... . .+.+..-+.. .+-..|... .+.+ |.. .. ..-++
T Consensus 323 ~a~~~~n~~p~~~~~~s~~~~~~~~~~~~~e~~~~r~nq~~~~~~~-~~~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k 401 (1394)
T KOG0298|consen 323 LAMLTSNRRPPDSYRNSYLHQRLEEYSDEVELKRSRINQKDEVLCS-GDKKHGKRVQCADEMGWQKTSEKLILELSDLPK 401 (1394)
T ss_pred HHHHhccCCCcccccchHHHHHHHHHhhhhHhHHhHhhhhhHHhhc-CCccCCcceeehhhhhccchHHHHHHHHhcccc
Confidence 999987665421000000 0 0000110000 000001000 0000 000 00 01111
Q ss_pred CCC-ccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC--ChhhhccCCEEEeehhhh
Q 004604 367 PVP-EVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIV 443 (743)
Q Consensus 367 ~~~-~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~--~~~~l~~~DVVITTY~~l 443 (743)
..+ +++.-..+.......++||||||.+++.||-.||.+|++. .++|+.|.|-...- .+.++.+||||+|||+++
T Consensus 402 ~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~--~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiL 479 (1394)
T KOG0298|consen 402 LCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISS--LLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDIL 479 (1394)
T ss_pred cchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccc--cceEEEEechhhhcccCchhhhccCEEEeehHHH
Confidence 111 2222223333445678999999999999999999999986 47999999977543 457889999999999999
Q ss_pred hccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCccc
Q 004604 444 TNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTI 523 (743)
Q Consensus 444 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~I 523 (743)
+.++.... .++.. .. .+.+++ .-...+||..+.|+||||||||.+
T Consensus 480 r~El~hte---------~~~~~---------R~---------lR~qsr--------~~~~~SPL~~v~wWRIclDEaQMv 524 (1394)
T KOG0298|consen 480 RNELYHTE---------DFGSD---------RQ---------LRHQSR--------YMRPNSPLLMVNWWRICLDEAQMV 524 (1394)
T ss_pred HhHhhccc---------ccCCh---------hh---------hhcccC--------CCCCCCchHHHHHHHHhhhHHHhh
Confidence 99864410 00000 00 000000 112457899999999999999999
Q ss_pred CChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHhcccccCCchhHHHHHHHhhhceEE
Q 004604 524 KNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIML 603 (743)
Q Consensus 524 KN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f~~pi~~~~~~~~~~L~~lL~~~mL 603 (743)
....|..++++..|.+.+|||.||||||+ ++|||.||.||+..||+....|.+.+..++... .....+.+++...+-
T Consensus 525 esssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--a~~~~~~dl~~q~l~ 601 (1394)
T KOG0298|consen 525 ESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--AKCEPLLDLFKQLLW 601 (1394)
T ss_pred cchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--hhhhhHHHHHHhhhh
Confidence 99999999999999999999999999999 999999999999999999999999987776554 344678889999999
Q ss_pred EEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHH----HHHHHHHHHHHhhc--CCc-------cccHHHHHHHH
Q 004604 604 RRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKL----ESDSLKKFKAFADA--GTV-------NQNYANILLML 670 (743)
Q Consensus 604 RRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l----~~~~~~~~~~~~~~--g~~-------~~~~~~iL~lL 670 (743)
|+.|-+|.. .+.+||..+.+....+++.|-.+|... ..+++..+...... +.. ....+.++..+
T Consensus 602 R~~k~~v~~---el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l 678 (1394)
T KOG0298|consen 602 RTFKSKVEH---ELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWL 678 (1394)
T ss_pred hhhhHHHHH---HhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHH
Confidence 999998865 468999988888888887776666544 44444444333210 111 12356789999
Q ss_pred HHHHHHcCCccccccc
Q 004604 671 LRLRQACDHPLLVKEY 686 (743)
Q Consensus 671 ~rLRqiC~HP~Lv~~~ 686 (743)
+||||+||||..-...
T Consensus 679 ~rLRq~Cchplv~~~~ 694 (1394)
T KOG0298|consen 679 LRLRQACCHPLVGNSN 694 (1394)
T ss_pred HHHHHhhcccccccCC
Confidence 9999999999876553
No 20
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.98 E-value=2.7e-31 Score=318.16 Aligned_cols=242 Identities=18% Similarity=0.277 Sum_probs=180.6
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
.+.|+|||+..+.+++.+.. ...|||||||||||++|++++..+..
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~-----~R~LLADEvGLGKTIeAglil~~l~~----------------------------- 195 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHA-----PRVLLADEVGLGKTIEAGMIIHQQLL----------------------------- 195 (956)
T ss_pred CCCCCHHHHHHHHHHhhccC-----CCEEEEeCCcCcHHHHHHHHHHHHHH-----------------------------
Confidence 67799999999988776532 45799999999999999998865422
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC----Ch
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK----DP 427 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~----~~ 427 (743)
++..+++|||||.+|+.||..|+.+++. +.+.++.+..-.. ..
T Consensus 196 -----------------------------~g~~~rvLIVvP~sL~~QW~~El~~kF~----l~~~i~~~~~~~~~~~~~~ 242 (956)
T PRK04914 196 -----------------------------TGRAERVLILVPETLQHQWLVEMLRRFN----LRFSLFDEERYAEAQHDAD 242 (956)
T ss_pred -----------------------------cCCCCcEEEEcCHHHHHHHHHHHHHHhC----CCeEEEcCcchhhhccccc
Confidence 1445789999999999999999998874 5566666543111 11
Q ss_pred hhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCc
Q 004604 428 VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL 507 (743)
Q Consensus 428 ~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L 507 (743)
..+..+++||+||+.++..... ...+
T Consensus 243 ~pf~~~~~vI~S~~~l~~~~~~------------------------------------------------------~~~l 268 (956)
T PRK04914 243 NPFETEQLVICSLDFLRRNKQR------------------------------------------------------LEQA 268 (956)
T ss_pred CccccCcEEEEEHHHhhhCHHH------------------------------------------------------HHHH
Confidence 2345689999999999752100 0014
Q ss_pred cccCccEEEEcCCcccCCh---hhHHHHHHHhc--ccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHhcc-
Q 004604 508 AKVGWFRVVLDEAQTIKNH---RTQVARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKI- 581 (743)
Q Consensus 508 ~~i~w~rVIlDEAH~IKN~---~Sk~skal~~L--~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f~~- 581 (743)
....|++|||||||++||. .|+.++++..| +++++++|||||+||++.|+|++|+||+|+.|+++..|....+.
T Consensus 269 ~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~ 348 (956)
T PRK04914 269 LAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQY 348 (956)
T ss_pred hhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhh
Confidence 5568999999999999953 56778899888 67899999999999999999999999999999999999864421
Q ss_pred -cc--------cCC--chhHHHHH-------------------------------HHh-----hhceEEEEecCcccCCC
Q 004604 582 -PI--------SRN--SLHGYKKL-------------------------------QAV-----LRAIMLRRTKGTFIDGQ 614 (743)
Q Consensus 582 -pi--------~~~--~~~~~~~L-------------------------------~~l-----L~~~mLRRtK~dv~~g~ 614 (743)
|+ ... .......| +.+ ...+|+|+++.+|.
T Consensus 349 ~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~--- 425 (956)
T PRK04914 349 RPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK--- 425 (956)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc---
Confidence 11 000 00011111 111 12789999999975
Q ss_pred CccCCCCceEEEEEEeCCHHHHHHHH
Q 004604 615 PIINLPPKTISLTKVDFSKEEWAFYK 640 (743)
Q Consensus 615 pil~LPpk~e~vv~v~Ls~~Qr~lY~ 640 (743)
.+|++..+.+.++++++.+..+.
T Consensus 426 ---~fp~R~~~~~~l~~~~~y~~~~~ 448 (956)
T PRK04914 426 ---GFPKRELHPIPLPLPEQYQTAIK 448 (956)
T ss_pred ---CCCcCceeEeecCCCHHHHHHHH
Confidence 59999999999999887666554
No 21
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.98 E-value=2e-32 Score=294.39 Aligned_cols=248 Identities=26% Similarity=0.344 Sum_probs=192.2
Q ss_pred cCCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCC
Q 004604 265 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (743)
Q Consensus 265 ~~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (743)
.+|+.+.. .|+|||++||.|.+.+. +-+|||||||||||+||||+..+.+.
T Consensus 190 v~d~kLvs-~LlPFQreGv~faL~Rg------GR~llADeMGLGKTiQAlaIA~yyra---------------------- 240 (689)
T KOG1000|consen 190 VMDPKLVS-RLLPFQREGVIFALERG------GRILLADEMGLGKTIQALAIARYYRA---------------------- 240 (689)
T ss_pred ccCHHHHH-hhCchhhhhHHHHHhcC------CeEEEecccccchHHHHHHHHHHHhh----------------------
Confidence 34555544 59999999999999653 23699999999999999999987643
Q ss_pred CCCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCC-C
Q 004604 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS-R 423 (743)
Q Consensus 345 d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~-r 423 (743)
.+|.|||||+||...|.+++.+|+|.. ..+.+..+.. +
T Consensus 241 ---------------------------------------EwplliVcPAsvrftWa~al~r~lps~--~pi~vv~~~~D~ 279 (689)
T KOG1000|consen 241 ---------------------------------------EWPLLIVCPASVRFTWAKALNRFLPSI--HPIFVVDKSSDP 279 (689)
T ss_pred ---------------------------------------cCcEEEEecHHHhHHHHHHHHHhcccc--cceEEEecccCC
Confidence 267999999999999999999999964 3344444332 2
Q ss_pred CCChhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccC
Q 004604 424 TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (743)
Q Consensus 424 ~~~~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (743)
.. .-....-|+|++|+.+....
T Consensus 280 ~~--~~~t~~~v~ivSye~ls~l~-------------------------------------------------------- 301 (689)
T KOG1000|consen 280 LP--DVCTSNTVAIVSYEQLSLLH-------------------------------------------------------- 301 (689)
T ss_pred cc--ccccCCeEEEEEHHHHHHHH--------------------------------------------------------
Confidence 21 11233469999999987521
Q ss_pred CCCccccCccEEEEcCCcccCChhhHHHHHHHhc--ccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHhcc
Q 004604 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKI 581 (743)
Q Consensus 504 ~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L--~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f~~ 581 (743)
..|..-.|.+||+||.|++|+.++++.+++..+ .++|.++|||||...++.|||.++..+++-.|.++.+|...|+.
T Consensus 302 -~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd 380 (689)
T KOG1000|consen 302 -DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCD 380 (689)
T ss_pred -HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcC
Confidence 014445689999999999999999999999888 78899999999999999999999999999999999999999875
Q ss_pred cccC------CchhHHHHHHHhh-hceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHH
Q 004604 582 PISR------NSLHGYKKLQAVL-RAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSL 647 (743)
Q Consensus 582 pi~~------~~~~~~~~L~~lL-~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~ 647 (743)
.-.. ....+..+|..+| +..|+||+|.+|+. +||||.. .|.+..+..+-+.-+.+.....
T Consensus 381 ~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~-----qLPpKrr-~Vv~~~~gr~da~~~~lv~~a~ 447 (689)
T KOG1000|consen 381 GKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK-----QLPPKRR-EVVYVSGGRIDARMDDLVKAAA 447 (689)
T ss_pred ccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh-----hCCccce-EEEEEcCCccchHHHHHHHHhh
Confidence 4321 1235678898888 56899999999987 8999954 4445556666555555555443
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=9.4e-21 Score=221.12 Aligned_cols=212 Identities=17% Similarity=0.234 Sum_probs=144.0
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
.+.|||||.+|+.||+... ..++|||...||.|||+++|+++...
T Consensus 253 ~~~LRpYQ~eAl~~~~~~g----r~r~GIIvLPtGaGKTlvai~aa~~l------------------------------- 297 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNG----RARSGIIVLPCGAGKSLVGVTAACTV------------------------------- 297 (732)
T ss_pred CCCcCHHHHHHHHHHHhcC----CCCCcEEEeCCCCChHHHHHHHHHHh-------------------------------
Confidence 4679999999999997421 23679999999999999999988531
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhh
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l 430 (743)
.+++|||||.+ ++.||.+||.+|+... ...+..|.|..+... .
T Consensus 298 --------------------------------~k~tLILvps~~Lv~QW~~ef~~~~~l~-~~~I~~~tg~~k~~~---~ 341 (732)
T TIGR00603 298 --------------------------------KKSCLVLCTSAVSVEQWKQQFKMWSTID-DSQICRFTSDAKERF---H 341 (732)
T ss_pred --------------------------------CCCEEEEeCcHHHHHHHHHHHHHhcCCC-CceEEEEecCccccc---c
Confidence 14599999987 5899999999997432 456778888654321 2
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...+|+||||+++.+...+.... . .....|...
T Consensus 342 ~~~~VvVtTYq~l~~~~~r~~~~------------------~-----------------------------~~l~~l~~~ 374 (732)
T TIGR00603 342 GEAGVVVSTYSMVAHTGKRSYES------------------E-----------------------------KVMEWLTNR 374 (732)
T ss_pred cCCcEEEEEHHHhhcccccchhh------------------h-----------------------------HHHHHhccc
Confidence 45789999999997542210000 0 000114456
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhh-CCCCCCcHHHHHHHhcccccCCchh
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL-KYDPYAVYKSFYSTIKIPISRNSLH 589 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL-~p~~~~~~~~F~~~f~~pi~~~~~~ 589 (743)
.|++||+||+|++.+ ....+.+..+.+.+||+|||||+.+. +.+..+.|| .|..|.. .|.
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~------------- 435 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWM------------- 435 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHH-------------
Confidence 799999999999964 33445677789999999999999875 334444443 3432211 011
Q ss_pred HHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHH
Q 004604 590 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKL 642 (743)
Q Consensus 590 ~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l 642 (743)
++++ +| -|.+.....|+|+|++++...|...
T Consensus 436 ------eLi~------------~G----~LA~~~~~ev~v~~t~~~~~~yl~~ 466 (732)
T TIGR00603 436 ------ELQK------------KG----FIANVQCAEVWCPMTPEFYREYLRE 466 (732)
T ss_pred ------HHHh------------CC----ccccceEEEEEecCCHHHHHHHHHh
Confidence 1111 11 4566667789999999877777543
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.60 E-value=4.9e-14 Score=170.48 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=120.6
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
..++++||++.+...+.. ++|++.++|+|||++++.++.....
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--------n~lv~~ptG~GKT~~a~~~i~~~l~----------------------------- 55 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--------NTLVVLPTGLGKTAIALLVIAERLH----------------------------- 55 (773)
T ss_pred cCCccHHHHHHHHHHhcC--------CeEEEcCCCccHHHHHHHHHHHHHH-----------------------------
Confidence 357899999999887642 4899999999999998887754321
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh-hh
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE 429 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~-~~ 429 (743)
.+.+++|||||. .++.||..++.+++... ..++.+++|....... ..
T Consensus 56 ------------------------------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~r~~~ 104 (773)
T PRK13766 56 ------------------------------KKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKIVVFTGEVSPEKRAEL 104 (773)
T ss_pred ------------------------------hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceEEEEeCCCCHHHHHHH
Confidence 123569999998 68899999999987532 3578888887654332 23
Q ss_pred hccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccc
Q 004604 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (743)
Q Consensus 430 l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (743)
+..++|+|+|+.++.+++.. ..+..
T Consensus 105 ~~~~~iiv~T~~~l~~~l~~-------------------------------------------------------~~~~~ 129 (773)
T PRK13766 105 WEKAKVIVATPQVIENDLIA-------------------------------------------------------GRISL 129 (773)
T ss_pred HhCCCEEEECHHHHHHHHHc-------------------------------------------------------CCCCh
Confidence 56789999999998764210 01223
Q ss_pred cCccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecCCCCCCHHHHHHHHHhhCC
Q 004604 510 VGWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (743)
Q Consensus 510 i~w~rVIlDEAH~IKN~~Sk~skal~~L---~a~~R~lLTGTPiqN~l~EL~sLl~FL~p 566 (743)
-.|++||+||||++.+..+..+.+-.-. ...++++|||||.++ ...+..++.-|..
T Consensus 130 ~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i 188 (773)
T PRK13766 130 EDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGI 188 (773)
T ss_pred hhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCc
Confidence 4688999999999987554443332222 345699999999876 4556555655543
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=6.4e-13 Score=150.48 Aligned_cols=209 Identities=22% Similarity=0.283 Sum_probs=141.4
Q ss_pred cccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCC
Q 004604 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (743)
Q Consensus 271 ~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (743)
....|++||.+++.-+...... .+.||+.=..|-|||+.++.++....
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~---~~~gvivlpTGaGKT~va~~~~~~~~----------------------------- 80 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRT---ERRGVIVLPTGAGKTVVAAEAIAELK----------------------------- 80 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhccc---CCceEEEeCCCCCHHHHHHHHHHHhc-----------------------------
Confidence 3567999999999877653221 35589999999999999999986421
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhh
Q 004604 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429 (743)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~ 429 (743)
..+|||||.. ++.||.+.+.+++.. .-.+.+|.|.......
T Consensus 81 ----------------------------------~~~Lvlv~~~~L~~Qw~~~~~~~~~~--~~~~g~~~~~~~~~~~-- 122 (442)
T COG1061 81 ----------------------------------RSTLVLVPTKELLDQWAEALKKFLLL--NDEIGIYGGGEKELEP-- 122 (442)
T ss_pred ----------------------------------CCEEEEECcHHHHHHHHHHHHHhcCC--ccccceecCceeccCC--
Confidence 2299999985 789999889888753 1245566665543222
Q ss_pred hccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccc
Q 004604 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (743)
Q Consensus 430 l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (743)
.+|+|.||+++.+... ...+..
T Consensus 123 ---~~i~vat~qtl~~~~~-------------------------------------------------------l~~~~~ 144 (442)
T COG1061 123 ---AKVTVATVQTLARRQL-------------------------------------------------------LDEFLG 144 (442)
T ss_pred ---CcEEEEEhHHHhhhhh-------------------------------------------------------hhhhcc
Confidence 5799999999986310 001233
Q ss_pred cCccEEEEcCCcccCChhhHHHHHHHhcccCc-EEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHhcccccCCch
Q 004604 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKR-RWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL 588 (743)
Q Consensus 510 i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~-R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f~~pi~~~~~ 588 (743)
-.|+.||+||+|++-..... +....+.+.+ |+.|||||....-....-++.++.+
T Consensus 145 ~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~---------------------- 200 (442)
T COG1061 145 NEFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGP---------------------- 200 (442)
T ss_pred cccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhcCC----------------------
Confidence 37999999999999754322 2334445556 9999999985443344444443332
Q ss_pred hHHHHHHHhhhceEEEEecCcccC-CCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHH
Q 004604 589 HGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSL 647 (743)
Q Consensus 589 ~~~~~L~~lL~~~mLRRtK~dv~~-g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~ 647 (743)
.+......+..+ | .|.|.....+.+.++..+...|........
T Consensus 201 ------------~vy~~~~~~li~~g----~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~ 244 (442)
T COG1061 201 ------------IVYEVSLKELIDEG----YLAPYKYVEIKVTLTEDEEREYAKESARFR 244 (442)
T ss_pred ------------eEeecCHHHHHhCC----CccceEEEEEEeccchHHHHHhhhhhhhhh
Confidence 222222222211 2 578888889999999999999998776654
No 25
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.51 E-value=1.7e-13 Score=135.06 Aligned_cols=163 Identities=25% Similarity=0.223 Sum_probs=111.0
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
.++++||.+++..+.... ..+++...+|.|||..++.++......
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~----------------------------- 51 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKR----------------------------- 51 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcc-----------------------------
Confidence 468999999999988421 468999999999999888777543211
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeC-hhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhh-
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL- 430 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P-~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l- 430 (743)
.+.+++||||| ..+..||..++.+.++......+.++++.........+
T Consensus 52 -----------------------------~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (201)
T smart00487 52 -----------------------------GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLE 102 (201)
T ss_pred -----------------------------cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHh
Confidence 11356999999 57889999999998764312455566665432222222
Q ss_pred cc-CCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccc
Q 004604 431 AK-YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (743)
Q Consensus 431 ~~-~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (743)
.. ++|+++||+.+...... ..+..
T Consensus 103 ~~~~~v~~~t~~~l~~~~~~-------------------------------------------------------~~~~~ 127 (201)
T smart00487 103 SGKTDILVTTPGRLLDLLEN-------------------------------------------------------DLLEL 127 (201)
T ss_pred cCCCCEEEeChHHHHHHHHc-------------------------------------------------------CCcCH
Confidence 22 39999999988764311 00233
Q ss_pred cCccEEEEcCCcccCC-hhhHHHHHH-Hhc-ccCcEEEEecCCCCCCH
Q 004604 510 VGWFRVVLDEAQTIKN-HRTQVARAC-CSL-RAKRRWCLSGTPIQNSI 554 (743)
Q Consensus 510 i~w~rVIlDEAH~IKN-~~Sk~skal-~~L-~a~~R~lLTGTPiqN~l 554 (743)
..|++||+||+|.+.+ ........+ ..+ ...+++++||||..+.-
T Consensus 128 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~ 175 (201)
T smart00487 128 SNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIE 175 (201)
T ss_pred hHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHH
Confidence 4578899999999985 333333333 334 57899999999974433
No 26
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.50 E-value=1.6e-13 Score=135.02 Aligned_cols=167 Identities=24% Similarity=0.274 Sum_probs=104.9
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
.+|++||.+++.-+..........+.++|...+|.|||+.+++++..+.
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------------------------- 50 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------------------------- 50 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------------
Confidence 4799999999998886543221235689999999999999998875431
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeC--CC-------
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHG--GS------- 422 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G--~~------- 422 (743)
.++|||||. +++.||.++|..+.... ..+....- ..
T Consensus 51 --------------------------------~~~l~~~p~~~l~~Q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 96 (184)
T PF04851_consen 51 --------------------------------RKVLIVAPNISLLEQWYDEFDDFGSEK--YNFFEKSIKPAYDSKEFIS 96 (184)
T ss_dssp --------------------------------CEEEEEESSHHHHHHHHHHHHHHSTTS--EEEEE--GGGCCE-SEEET
T ss_pred --------------------------------cceeEecCHHHHHHHHHHHHHHhhhhh--hhhcccccccccccccccc
Confidence 159999998 78899999998776532 22211110 00
Q ss_pred CCC-----ChhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCC
Q 004604 423 RTK-----DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 497 (743)
Q Consensus 423 r~~-----~~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~ 497 (743)
... ........++++++|+.+......... ..+...
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~---------~~~~~~------------------------------ 137 (184)
T PF04851_consen 97 IQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKK---------IDESAR------------------------------ 137 (184)
T ss_dssp TTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH------------------------------------------------
T ss_pred cccccccccccccccccchhhHHHHHHhhcccccc---------cccchh------------------------------
Confidence 000 011235678999999998764211000 000000
Q ss_pred CCcccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCC
Q 004604 498 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPI 550 (743)
Q Consensus 498 ~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPi 550 (743)
....+....+++||+||||++.+... ++.+....+.+++.|||||.
T Consensus 138 -----~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 138 -----RSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp -----GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred -----hhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 00013345678999999999975432 66666688899999999995
No 27
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.44 E-value=9.6e-13 Score=122.07 Aligned_cols=137 Identities=24% Similarity=0.245 Sum_probs=97.1
Q ss_pred ceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcccccccccCCCCCCCCCCcccccccc
Q 004604 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRS 377 (743)
Q Consensus 298 GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~ 377 (743)
+.++...+|.|||.+++.++......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~------------------------------------------------------ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS------------------------------------------------------ 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc------------------------------------------------------
Confidence 57999999999999999999754321
Q ss_pred ccCCCCCCcEEEEeChhhH-HHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh--hhhccCCEEEeehhhhhccCCCCCCCc
Q 004604 378 FSRRRPAAGTLVVCPASVL-RQWARELEDKVPDKAALSVLIYHGGSRTKDP--VELAKYDVVLTTYSIVTNEVPKQPSVD 454 (743)
Q Consensus 378 ~~~~~~~~~tLIV~P~Sll-~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~--~~l~~~DVVITTY~~l~~e~~~~~~~~ 454 (743)
...+++|||||...+ .+|..++..+... .+.+.++++....... ......+|+++||+.+......
T Consensus 28 ----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~----- 96 (144)
T cd00046 28 ----LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER----- 96 (144)
T ss_pred ----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHc-----
Confidence 123579999998755 6667777777642 4667777776544332 2356789999999988653211
Q ss_pred hHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCChhhHHH---
Q 004604 455 EEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVA--- 531 (743)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~s--- 531 (743)
..+....|++||+||+|.+.+......
T Consensus 97 --------------------------------------------------~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~ 126 (144)
T cd00046 97 --------------------------------------------------LKLSLKKLDLLILDEAHRLLNQGFGLLGLK 126 (144)
T ss_pred --------------------------------------------------CCcchhcCCEEEEeCHHHHhhcchHHHHHH
Confidence 002344688999999999998765543
Q ss_pred HHHHhcccCcEEEEecCC
Q 004604 532 RACCSLRAKRRWCLSGTP 549 (743)
Q Consensus 532 kal~~L~a~~R~lLTGTP 549 (743)
.........+++++||||
T Consensus 127 ~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 127 ILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhhCCccceEEEEeccC
Confidence 334445778999999998
No 28
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.41 E-value=3.8e-12 Score=146.55 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=101.7
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...|++||.+++.-++.. ..|||.-..|.|||+.+++++.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~-------~~~il~apTGsGKT~i~~~l~~~~~~----------------------------- 155 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKN-------NRRLLNLPTSAGKSLIQYLLSRYYLE----------------------------- 155 (501)
T ss_pred cCCCCHHHHHHHHHHHhc-------CceEEEeCCCCCHHHHHHHHHHHHHh-----------------------------
Confidence 467999999999777642 34799999999999987665432111
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEE-EEEeCCCCCCChhh
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSV-LIYHGGSRTKDPVE 429 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V-~iy~G~~r~~~~~~ 429 (743)
....++|||||. .|+.||.++|.++.... ...+ .++.|....
T Consensus 156 ------------------------------~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~~~i~~g~~~~----- 199 (501)
T PHA02558 156 ------------------------------NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP-REAMHKIYSGTAKD----- 199 (501)
T ss_pred ------------------------------cCCCeEEEEECcHHHHHHHHHHHHHhcccc-ccceeEEecCcccC-----
Confidence 111269999998 68899999999875321 2223 445554332
Q ss_pred hccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccc
Q 004604 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (743)
Q Consensus 430 l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (743)
...+|+|+|++.+.+... ..+
T Consensus 200 -~~~~I~VaT~qsl~~~~~--------------------------------------------------------~~~-- 220 (501)
T PHA02558 200 -TDAPIVVSTWQSAVKQPK--------------------------------------------------------EWF-- 220 (501)
T ss_pred -CCCCEEEeeHHHHhhchh--------------------------------------------------------hhc--
Confidence 357899999998753210 001
Q ss_pred cCccEEEEcCCcccCChhhHHHHHHHhc-ccCcEEEEecCCCCC
Q 004604 510 VGWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQN 552 (743)
Q Consensus 510 i~w~rVIlDEAH~IKN~~Sk~skal~~L-~a~~R~lLTGTPiqN 552 (743)
-.|++||+||||++... .....+..+ .++++++|||||...
T Consensus 221 ~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 221 DQFGMVIVDECHLFTGK--SLTSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred cccCEEEEEchhcccch--hHHHHHHhhhccceEEEEeccCCCc
Confidence 14688999999999753 234445566 678999999999643
No 29
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.23 E-value=1.6e-11 Score=133.92 Aligned_cols=173 Identities=23% Similarity=0.323 Sum_probs=122.8
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
.+.++|||-..|..|....+ .+.||+--..|.|||+..|..+...
T Consensus 300 st~iRpYQEksL~KMFGNgR----ARSGiIVLPCGAGKtLVGvTAa~ti------------------------------- 344 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGR----ARSGIIVLPCGAGKTLVGVTAACTI------------------------------- 344 (776)
T ss_pred ccccCchHHHHHHHHhCCCc----ccCceEEEecCCCCceeeeeeeeee-------------------------------
Confidence 45799999999999986543 4779999999999999888776422
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhh-HHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhh
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASV-LRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sl-l~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l 430 (743)
.+..||+|-.+| +.||..+|..|..-. .-.+..+........ -
T Consensus 345 --------------------------------kK~clvLcts~VSVeQWkqQfk~wsti~-d~~i~rFTsd~Ke~~---~ 388 (776)
T KOG1123|consen 345 --------------------------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ-DDQICRFTSDAKERF---P 388 (776)
T ss_pred --------------------------------cccEEEEecCccCHHHHHHHHHhhcccC-ccceEEeeccccccC---C
Confidence 144899999876 899999999997643 344566665543322 2
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...+||||||++++.--.+.... ++ .-..|...
T Consensus 389 ~~~gvvvsTYsMva~t~kRS~ea------ek-----------------------------------------~m~~l~~~ 421 (776)
T KOG1123|consen 389 SGAGVVVTTYSMVAYTGKRSHEA------EK-----------------------------------------IMDFLRGR 421 (776)
T ss_pred CCCcEEEEeeehhhhcccccHHH------HH-----------------------------------------HHHHHhcC
Confidence 46789999999998632221000 00 00125667
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc-ccCcEEEEecCCCCC--CHHHHHHHHHhh-CCCCC
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQN--SIDDLYSYFRFL-KYDPY 569 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L-~a~~R~lLTGTPiqN--~l~EL~sLl~FL-~p~~~ 569 (743)
.|.++||||.|.+ -++.++.+..+ .+..++.||+|-+.. .+.| |+|| .|..|
T Consensus 422 EWGllllDEVHvv---PA~MFRRVlsiv~aHcKLGLTATLvREDdKI~D----LNFLIGPKlY 477 (776)
T KOG1123|consen 422 EWGLLLLDEVHVV---PAKMFRRVLSIVQAHCKLGLTATLVREDDKITD----LNFLIGPKLY 477 (776)
T ss_pred eeeeEEeehhccc---hHHHHHHHHHHHHHHhhccceeEEeeccccccc----cceeecchhh
Confidence 8999999999999 46677766665 788899999998854 4555 3565 45544
No 30
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.18 E-value=1.9e-10 Score=142.13 Aligned_cols=112 Identities=18% Similarity=0.086 Sum_probs=74.3
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
..||+||.+|+..+...... ..++++|....|.|||+++++++..+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~--g~r~~Ll~maTGSGKT~tai~li~~L~~~----------------------------- 460 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVE--GQREILLAMATGTGKTRTAIALMYRLLKA----------------------------- 460 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHh--ccCCeEEEeCCCCCHHHHHHHHHHHHHhc-----------------------------
Confidence 57999999999877654322 23679999999999999999988543221
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEE-EEeCCCCCCChhhh
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVL-IYHGGSRTKDPVEL 430 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~-iy~G~~r~~~~~~l 430 (743)
...+++|+|||. .|+.||.++|..+..+. ...+. +|.. ....+...-
T Consensus 461 -----------------------------~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~-~~~~~~i~~i-~~L~~~~~~ 509 (1123)
T PRK11448 461 -----------------------------KRFRRILFLVDRSALGEQAEDAFKDTKIEG-DQTFASIYDI-KGLEDKFPE 509 (1123)
T ss_pred -----------------------------CccCeEEEEecHHHHHHHHHHHHHhccccc-ccchhhhhch-hhhhhhccc
Confidence 223579999996 58899999999864321 11111 1211 100111112
Q ss_pred ccCCEEEeehhhhhcc
Q 004604 431 AKYDVVLTTYSIVTNE 446 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e 446 (743)
....|+|+||.++.+.
T Consensus 510 ~~~~I~iaTiQtl~~~ 525 (1123)
T PRK11448 510 DETKVHVATVQGMVKR 525 (1123)
T ss_pred CCCCEEEEEHHHHHHh
Confidence 3578999999998754
No 31
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.06 E-value=2.2e-09 Score=108.44 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=104.0
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.|++||.+++.-+.+ ++..+++-..|.|||+..+..+.......
T Consensus 21 ~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~~----------------------------- 64 (203)
T cd00268 21 KPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDPS----------------------------- 64 (203)
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHhh-----------------------------
Confidence 489999999988874 34579999999999998554443221100
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC-hhhh-
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVEL- 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~-~~~l- 430 (743)
.......+|||||. .++.||...++++.... .+++..++|...... ...+
T Consensus 65 --------------------------~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 117 (203)
T cd00268 65 --------------------------PKKDGPQALILAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLK 117 (203)
T ss_pred --------------------------cccCCceEEEEcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhc
Confidence 00112458999997 58899999999876543 688888888664322 2223
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...+|+|+|.+.+...+... .+.--
T Consensus 118 ~~~~iiv~T~~~l~~~l~~~-------------------------------------------------------~~~~~ 142 (203)
T cd00268 118 RGPHIVVATPGRLLDLLERG-------------------------------------------------------KLDLS 142 (203)
T ss_pred CCCCEEEEChHHHHHHHHcC-------------------------------------------------------CCChh
Confidence 37899999988775432110 01112
Q ss_pred CccEEEEcCCcccCChh-hH-HHHHHHhcc-cCcEEEEecCCC
Q 004604 511 GWFRVVLDEAQTIKNHR-TQ-VARACCSLR-AKRRWCLSGTPI 550 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~-Sk-~skal~~L~-a~~R~lLTGTPi 550 (743)
.+++||+||+|.+-+.. .. ....+..+. ....+++|+||-
T Consensus 143 ~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 143 KVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred hCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 35789999999986542 22 222233343 457899999987
No 32
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.02 E-value=1.2e-09 Score=129.90 Aligned_cols=162 Identities=18% Similarity=0.174 Sum_probs=103.6
Q ss_pred cccccchhhHHHHHHHHHhhhcc---ccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCC
Q 004604 271 LSVNLLKHQKIALAWMLQKETRS---LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDD 347 (743)
Q Consensus 271 ~~~~L~phQ~~gl~wml~~e~~~---~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 347 (743)
++.-.++||..||.-+..+.... ...++||+.+..|.|||++++.++..+...
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~------------------------ 290 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL------------------------ 290 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh------------------------
Confidence 45558999999999888765431 123689999999999999999988543211
Q ss_pred CCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC
Q 004604 348 NGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD 426 (743)
Q Consensus 348 ~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~ 426 (743)
....++|||||. .|..||.++|..+.... . .+......
T Consensus 291 ----------------------------------~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~--~-----~~~~s~~~ 329 (667)
T TIGR00348 291 ----------------------------------LKNPKVFFVVDRRELDYQLMKEFQSLQKDC--A-----ERIESIAE 329 (667)
T ss_pred ----------------------------------cCCCeEEEEECcHHHHHHHHHHHHhhCCCC--C-----cccCCHHH
Confidence 223569999997 58899999999875421 0 11111111
Q ss_pred h-hhh--ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccC
Q 004604 427 P-VEL--AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (743)
Q Consensus 427 ~-~~l--~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (743)
. ..+ ....|||||+..+...+...
T Consensus 330 L~~~l~~~~~~iivtTiQk~~~~~~~~----------------------------------------------------- 356 (667)
T TIGR00348 330 LKRLLEKDDGGIIITTIQKFDKKLKEE----------------------------------------------------- 356 (667)
T ss_pred HHHHHhCCCCCEEEEEhHHhhhhHhhh-----------------------------------------------------
Confidence 1 111 23679999999987521100
Q ss_pred CCCcc-ccCccEEEEcCCcccCChhhHHHHHHH-hcccCcEEEEecCCCCC
Q 004604 504 CGPLA-KVGWFRVVLDEAQTIKNHRTQVARACC-SLRAKRRWCLSGTPIQN 552 (743)
Q Consensus 504 ~~~L~-~i~w~rVIlDEAH~IKN~~Sk~skal~-~L~a~~R~lLTGTPiqN 552 (743)
...+. .....+||+||||+.-- ....+.++ .+...+++.|||||+..
T Consensus 357 ~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 357 EEKFPVDRKEVVVIFDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred hhccCCCCCCEEEEEEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCccc
Confidence 00000 01123799999998742 22334443 46677999999999853
No 33
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.00 E-value=9.5e-09 Score=108.83 Aligned_cols=247 Identities=19% Similarity=0.218 Sum_probs=149.2
Q ss_pred ccchhhHHHHHHHHHhhhccc---cccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCC
Q 004604 274 NLLKHQKIALAWMLQKETRSL---HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~---~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (743)
.|=.-|+++|.+..++....+ .-.|-+|+|.+|.||-.|+-++|..+...
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------------------------- 89 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------------------------- 89 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------------------------
Confidence 466789999999887655322 23678999999999999999999754321
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhh
Q 004604 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (743)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l 430 (743)
+..+++-|-+...|..-=++.+...-.. .+.+.....-+... . .-
T Consensus 90 -------------------------------Gr~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~~~-~-~~ 134 (303)
T PF13872_consen 90 -------------------------------GRKRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKYGD-I-IR 134 (303)
T ss_pred -------------------------------CCCceEEEECChhhhhHHHHHHHHhCCC--cccceechhhccCc-C-CC
Confidence 2223455555566776666666653221 34444333322211 1 11
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
.+.+||.+||+.|..+.... .+++.+..+... +..-
T Consensus 135 ~~~GvlF~TYs~L~~~~~~~------------------------~~~~sRl~ql~~--------------------W~g~ 170 (303)
T PF13872_consen 135 LKEGVLFSTYSTLISESQSG------------------------GKYRSRLDQLVD--------------------WCGE 170 (303)
T ss_pred CCCCccchhHHHHHhHHhcc------------------------CCccchHHHHHH--------------------HHhc
Confidence 35689999999998652110 000000000000 0001
Q ss_pred Cc-cEEEEcCCcccCChhh------HHHHHHHhccc----CcEEEEecCCCCCCHHHHHHHHHh--hCC-CCCCcHHHHH
Q 004604 511 GW-FRVVLDEAQTIKNHRT------QVARACCSLRA----KRRWCLSGTPIQNSIDDLYSYFRF--LKY-DPYAVYKSFY 576 (743)
Q Consensus 511 ~w-~rVIlDEAH~IKN~~S------k~skal~~L~a----~~R~lLTGTPiqN~l~EL~sLl~F--L~p-~~~~~~~~F~ 576 (743)
.| .+||+||+|..||..+ ++..++..|+. -+.+-.|+|...+ +..|--+-++ -.+ -+|.++.+|.
T Consensus 171 dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~f~ 249 (303)
T PF13872_consen 171 DFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGLWGPGTPFPDFDDFL 249 (303)
T ss_pred CCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-CceeeeeeeccccCCCCCCCCHHHHH
Confidence 12 2799999999999754 67777776633 3678899999854 2222211121 111 2466788887
Q ss_pred HHhcccccCCchhHHHHHHHhh--hceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHH
Q 004604 577 STIKIPISRNSLHGYKKLQAVL--RAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKK 641 (743)
Q Consensus 577 ~~f~~pi~~~~~~~~~~L~~lL--~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~ 641 (743)
+.++ ++....++-+..-| ...+++|.. .+-.....++.++|+++|.++|++
T Consensus 250 ~a~~----~gGv~amE~vA~dlKa~G~yiaR~L----------Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 250 EAME----KGGVGAMEMVAMDLKARGMYIARQL----------SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHH----hcCchHHHHHHHHHHhcchheeeec----------ccCCceEEEEEecCCHHHHHHhcC
Confidence 7764 45555555555544 356788875 455677889999999999999975
No 34
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.96 E-value=8.6e-09 Score=122.08 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=108.7
Q ss_pred cccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCC
Q 004604 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (743)
Q Consensus 271 ~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (743)
+...|.++|+.++..++...... .....+|.-++|.|||+.++..+.....
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~-~~~~~Ll~g~TGSGKT~va~l~il~~~~---------------------------- 282 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSD-VPMNRLLQGDVGSGKTLVAALAMLAAIE---------------------------- 282 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccC-CCccEEEECCCCCcHHHHHHHHHHHHHH----------------------------
Confidence 35679999999999988654322 1234689999999999987655432110
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh-
Q 004604 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV- 428 (743)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~- 428 (743)
....+||++|.. |..||.+++.++++.. .+++.+++|+.......
T Consensus 283 --------------------------------~g~qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~ 329 (630)
T TIGR00643 283 --------------------------------AGYQVALMAPTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKE 329 (630)
T ss_pred --------------------------------cCCcEEEECCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHH
Confidence 013489999986 5699999999988643 58899999986544322
Q ss_pred ---h--hccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccC
Q 004604 429 ---E--LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (743)
Q Consensus 429 ---~--l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (743)
. .+..+|||.|+..+...+
T Consensus 330 ~~~~i~~g~~~IiVgT~~ll~~~~-------------------------------------------------------- 353 (630)
T TIGR00643 330 LLETIASGQIHLVVGTHALIQEKV-------------------------------------------------------- 353 (630)
T ss_pred HHHHHhCCCCCEEEecHHHHhccc--------------------------------------------------------
Confidence 1 236799999998775311
Q ss_pred CCCccccCccEEEEcCCcccCChhhHHHHHHHhcc---cCcEEEEecCCCCCCH
Q 004604 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLR---AKRRWCLSGTPIQNSI 554 (743)
Q Consensus 504 ~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~---a~~R~lLTGTPiqN~l 554 (743)
.|. ...+||+||+|++.- .++........ ..+.+++||||+...+
T Consensus 354 --~~~--~l~lvVIDEaH~fg~--~qr~~l~~~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 354 --EFK--RLALVIIDEQHRFGV--EQRKKLREKGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred --ccc--ccceEEEechhhccH--HHHHHHHHhcccCCCCCEEEEeCCCCcHHH
Confidence 011 245799999999742 22222222223 5689999999988654
No 35
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.91 E-value=9.8e-09 Score=100.01 Aligned_cols=158 Identities=20% Similarity=0.258 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcccccc
Q 004604 277 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKV 356 (743)
Q Consensus 277 phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 356 (743)
|+|.+++.-+.+. +.-|+.-..|.|||...+..+......
T Consensus 2 ~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~l~~~~~--------------------------------- 41 (169)
T PF00270_consen 2 PLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPALNRLQE--------------------------------- 41 (169)
T ss_dssp HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHHHhhhcc---------------------------------
Confidence 7899999888732 225899999999999988666432211
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-C-hhhh-cc
Q 004604 357 KETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-D-PVEL-AK 432 (743)
Q Consensus 357 k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~-~-~~~l-~~ 432 (743)
.....+||+||. .++.|=.+++..++.. ..+++..++|..... + ...+ ..
T Consensus 42 -------------------------~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (169)
T PF00270_consen 42 -------------------------GKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSNQ 95 (169)
T ss_dssp -------------------------TSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHTT
T ss_pred -------------------------CCCceEEEEeecccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 112369999996 5889999999998865 257888888866422 1 1223 46
Q ss_pred CCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCc
Q 004604 433 YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGW 512 (743)
Q Consensus 433 ~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w 512 (743)
.+|+|+|++.+...+.. ....+ ...
T Consensus 96 ~~ilv~T~~~l~~~~~~-----------------------------------------------------~~~~~--~~~ 120 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISN-----------------------------------------------------GKINI--SRL 120 (169)
T ss_dssp SSEEEEEHHHHHHHHHT-----------------------------------------------------TSSTG--TTE
T ss_pred ccccccCcchhhccccc-----------------------------------------------------ccccc--ccc
Confidence 99999999998753210 00002 226
Q ss_pred cEEEEcCCcccCCh--hhHHHHHHHhc---ccCcEEEEecCCCCCCHHH
Q 004604 513 FRVVLDEAQTIKNH--RTQVARACCSL---RAKRRWCLSGTPIQNSIDD 556 (743)
Q Consensus 513 ~rVIlDEAH~IKN~--~Sk~skal~~L---~a~~R~lLTGTPiqN~l~E 556 (743)
++||+||+|.+-.. .......+..+ ...+.+++||||- .++++
T Consensus 121 ~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 121 SLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp SEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred eeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 78999999999652 22333333333 3367899999998 65554
No 36
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.89 E-value=1.8e-07 Score=103.82 Aligned_cols=223 Identities=18% Similarity=0.140 Sum_probs=146.6
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
++.|.||..-++-.+.+ ..+++--.|||||+.|+.+++.....
T Consensus 14 ie~R~YQ~~i~a~al~~--------NtLvvlPTGLGKT~IA~~V~~~~l~~----------------------------- 56 (542)
T COG1111 14 IEPRLYQLNIAAKALFK--------NTLVVLPTGLGKTFIAAMVIANRLRW----------------------------- 56 (542)
T ss_pred ccHHHHHHHHHHHHhhc--------CeEEEecCCccHHHHHHHHHHHHHHh-----------------------------
Confidence 46788999888777743 36999999999999998888643221
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh-hhh
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VEL 430 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~-~~l 430 (743)
. .+..|+++|. -|+.|=..-+.+.+.-. .-.+..+.|.-+..+. ..+
T Consensus 57 -----------------------------~-~~kvlfLAPTKPLV~Qh~~~~~~v~~ip-~~~i~~ltGev~p~~R~~~w 105 (542)
T COG1111 57 -----------------------------F-GGKVLFLAPTKPLVLQHAEFCRKVTGIP-EDEIAALTGEVRPEEREELW 105 (542)
T ss_pred -----------------------------c-CCeEEEecCCchHHHHHHHHHHHHhCCC-hhheeeecCCCChHHHHHHH
Confidence 1 1358999997 68899988888876532 4578889998776543 457
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
.+..|++.|-.++.+++.. +-+..-
T Consensus 106 ~~~kVfvaTPQvveNDl~~-------------------------------------------------------Grid~~ 130 (542)
T COG1111 106 AKKKVFVATPQVVENDLKA-------------------------------------------------------GRIDLD 130 (542)
T ss_pred hhCCEEEeccHHHHhHHhc-------------------------------------------------------CccChH
Confidence 8899999999999886521 123444
Q ss_pred CccEEEEcCCcccCChhhHHHHHH--Hhccc-CcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHhcccccCCc
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARAC--CSLRA-KRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNS 587 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal--~~L~a-~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f~~pi~~~~ 587 (743)
.+.+||+||||+.-..-+-++-|= ..-.. .+.+.|||||= ++.+.+...++=|..
T Consensus 131 dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgI--------------------- 188 (542)
T COG1111 131 DVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGI--------------------- 188 (542)
T ss_pred HceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCc---------------------
Confidence 577899999999754333333332 22233 36899999993 233333333332222
Q ss_pred hhHHHHHHHhhhceEEEEecCc--ccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004604 588 LHGYKKLQAVLRAIMLRRTKGT--FIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAG 657 (743)
Q Consensus 588 ~~~~~~L~~lL~~~mLRRtK~d--v~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~g 657 (743)
..+. -||-++ |.. -+-++..+.+.|+|+++-.++-+.+.+-.+..++...+.|
T Consensus 189 -----------e~ve-vrTE~d~DV~~-----Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 189 -----------EKVE-VRTEEDPDVRP-----YVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred -----------ceEE-EecCCCccHHH-----hhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1222 333332 322 4566778899999998877776666555555555444433
No 37
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.89 E-value=9e-09 Score=119.61 Aligned_cols=162 Identities=17% Similarity=0.127 Sum_probs=115.4
Q ss_pred CccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCC
Q 004604 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDN 348 (743)
Q Consensus 269 ~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 348 (743)
......+|.||..|++...+.-..+. .+ .+|.-..|.|||.+||++|..+.+.
T Consensus 160 ~~s~i~~RyyQ~~AI~rv~Eaf~~g~-~r-aLlvMATGTGKTrTAiaii~rL~r~------------------------- 212 (875)
T COG4096 160 IDSAIGPRYYQIIAIRRVIEAFSKGQ-NR-ALLVMATGTGKTRTAIAIIDRLIKS------------------------- 212 (875)
T ss_pred ccccccchHHHHHHHHHHHHHHhcCC-ce-EEEEEecCCCcceeHHHHHHHHHhc-------------------------
Confidence 33467799999999999987655432 23 8999999999999999999765542
Q ss_pred CCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeC-hhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh
Q 004604 349 GNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP 427 (743)
Q Consensus 349 ~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P-~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~ 427 (743)
+..+++|.++= .+|+.|=..++.+|.|.+...+.+--.+..
T Consensus 213 ---------------------------------~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~~----- 254 (875)
T COG4096 213 ---------------------------------GWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKGD----- 254 (875)
T ss_pred ---------------------------------chhheeeEEechHHHHHHHHHHHHHhCCCccceeeeecccCC-----
Confidence 45678999997 478899999999999976444443222221
Q ss_pred hhhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCc
Q 004604 428 VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL 507 (743)
Q Consensus 428 ~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L 507 (743)
..+.|+|.||.++......+. ....++
T Consensus 255 ---~s~~i~lsTyqt~~~~~~~~~--------------------------------------------------~~~~~f 281 (875)
T COG4096 255 ---TSSEIYLSTYQTMTGRIEQKE--------------------------------------------------DEYRRF 281 (875)
T ss_pred ---cceeEEEeehHHHHhhhhccc--------------------------------------------------cccccC
Confidence 268899999999986432110 011235
Q ss_pred cccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCC
Q 004604 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQ 551 (743)
Q Consensus 508 ~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiq 551 (743)
..-.||+||+||||+- --+.++++...-.-.+++||+||-.
T Consensus 282 ~~g~FDlIvIDEaHRg---i~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 282 GPGFFDLIVIDEAHRG---IYSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred CCCceeEEEechhhhh---HHhhhHHHHHHHHHHHHhhccCccc
Confidence 5567999999999983 1222335555555567788999987
No 38
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.82 E-value=3.4e-08 Score=117.95 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=108.0
Q ss_pred cccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCC
Q 004604 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (743)
Q Consensus 271 ~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (743)
+...|.++|+.++.-+....... ....-+|.-++|.|||+.++..+.....
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~-~~~~~Ll~~~TGSGKT~va~~~il~~~~---------------------------- 308 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASP-KPMNRLLQGDVGSGKTVVAALAALAAIE---------------------------- 308 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhcc-CCceEEEECCCCCcHHHHHHHHHHHHHH----------------------------
Confidence 35679999999999887643221 1234588889999999988766542110
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh-
Q 004604 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV- 428 (743)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~- 428 (743)
....+||++|.. |..|+.+.+.++++.- .+++.+++|........
T Consensus 309 --------------------------------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~ 355 (681)
T PRK10917 309 --------------------------------AGYQAALMAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERRE 355 (681)
T ss_pred --------------------------------cCCeEEEEeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHH
Confidence 113489999985 6699999999988642 58899999986533221
Q ss_pred ---h--hccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccC
Q 004604 429 ---E--LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (743)
Q Consensus 429 ---~--l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (743)
. .+..||||+|...+...+.
T Consensus 356 ~~~~l~~g~~~IvVgT~~ll~~~v~------------------------------------------------------- 380 (681)
T PRK10917 356 ILEAIASGEADIVIGTHALIQDDVE------------------------------------------------------- 380 (681)
T ss_pred HHHHHhCCCCCEEEchHHHhcccch-------------------------------------------------------
Confidence 1 2368999999987643110
Q ss_pred CCCccccCccEEEEcCCcccCChhhHHHHHHHhc-ccCcEEEEecCCCCCCH
Q 004604 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSI 554 (743)
Q Consensus 504 ~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L-~a~~R~lLTGTPiqN~l 554 (743)
|. ...+||+||+|++. ......+... ...+.+++||||+...+
T Consensus 381 ---~~--~l~lvVIDE~Hrfg---~~qr~~l~~~~~~~~iL~~SATp~prtl 424 (681)
T PRK10917 381 ---FH--NLGLVIIDEQHRFG---VEQRLALREKGENPHVLVMTATPIPRTL 424 (681)
T ss_pred ---hc--ccceEEEechhhhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHH
Confidence 11 24579999999983 2223333333 34688999999986543
No 39
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.79 E-value=5.2e-08 Score=121.30 Aligned_cols=159 Identities=14% Similarity=0.221 Sum_probs=105.9
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...+.+.|..++.-++....+ ......+++-++|.|||.+++-.+... .
T Consensus 598 ~~~~T~~Q~~aI~~il~d~~~-~~~~d~Ll~a~TGsGKT~val~aa~~~--~---------------------------- 646 (1147)
T PRK10689 598 PFETTPDQAQAINAVLSDMCQ-PLAMDRLVCGDVGFGKTEVAMRAAFLA--V---------------------------- 646 (1147)
T ss_pred CCCCCHHHHHHHHHHHHHhhc-CCCCCEEEEcCCCcCHHHHHHHHHHHH--H----------------------------
Confidence 457899999999877654222 123457999999999999876433211 0
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhh-
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE- 429 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~- 429 (743)
.....+||+||.. |..|..+.|.+.+... .+++.+++|.........
T Consensus 647 ------------------------------~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~i 695 (1147)
T PRK10689 647 ------------------------------ENHKQVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQI 695 (1147)
T ss_pred ------------------------------HcCCeEEEEeCcHHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHH
Confidence 0113489999986 5589999998876532 467777777654332221
Q ss_pred ---h--ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCC
Q 004604 430 ---L--AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGC 504 (743)
Q Consensus 430 ---l--~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~ 504 (743)
+ +..||||+|++.+...+.
T Consensus 696 l~~l~~g~~dIVVgTp~lL~~~v~-------------------------------------------------------- 719 (1147)
T PRK10689 696 LAEAAEGKIDILIGTHKLLQSDVK-------------------------------------------------------- 719 (1147)
T ss_pred HHHHHhCCCCEEEECHHHHhCCCC--------------------------------------------------------
Confidence 1 468999999987643210
Q ss_pred CCccccCccEEEEcCCcccCChhhHHHHHHHhc-ccCcEEEEecCCCCCCHH
Q 004604 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSID 555 (743)
Q Consensus 505 ~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L-~a~~R~lLTGTPiqN~l~ 555 (743)
+ -...+|||||+|++... ....++.+ .....+++||||++..+.
T Consensus 720 --~--~~L~lLVIDEahrfG~~---~~e~lk~l~~~~qvLl~SATpiprtl~ 764 (1147)
T PRK10689 720 --W--KDLGLLIVDEEHRFGVR---HKERIKAMRADVDILTLTATPIPRTLN 764 (1147)
T ss_pred --H--hhCCEEEEechhhcchh---HHHHHHhcCCCCcEEEEcCCCCHHHHH
Confidence 1 13567999999999432 23344555 345789999999987654
No 40
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.75 E-value=1.2e-07 Score=115.66 Aligned_cols=159 Identities=17% Similarity=0.231 Sum_probs=106.8
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...|.|.|..++..+.+-..+. .....+++=++|-|||..++..+... .
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~-~~~d~Ll~adTGsGKT~val~a~l~a--l---------------------------- 497 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESP-RPMDRLVCGDVGFGKTEVAMRAAFKA--V---------------------------- 497 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhccc-CcCCEEEECCCCccHHHHHHHHHHHH--H----------------------------
Confidence 5678999999999887643221 22346999999999999876554321 1
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh--
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV-- 428 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~-- 428 (743)
.....+||+||.. |..|....|.+++... .+++.+++|.....+..
T Consensus 498 ------------------------------~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~ 546 (926)
T TIGR00580 498 ------------------------------LDGKQVAVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEI 546 (926)
T ss_pred ------------------------------HhCCeEEEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHH
Confidence 0013489999986 6699999999887643 57788888765432221
Q ss_pred --hh--ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCC
Q 004604 429 --EL--AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGC 504 (743)
Q Consensus 429 --~l--~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~ 504 (743)
.+ +..||||+|+..+...+.
T Consensus 547 ~~~l~~g~~dIVIGTp~ll~~~v~-------------------------------------------------------- 570 (926)
T TIGR00580 547 LKELASGKIDILIGTHKLLQKDVK-------------------------------------------------------- 570 (926)
T ss_pred HHHHHcCCceEEEchHHHhhCCCC--------------------------------------------------------
Confidence 12 368999999976642210
Q ss_pred CCccccCccEEEEcCCcccCChhhHHHHHHHhcc-cCcEEEEecCCCCCCHH
Q 004604 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLR-AKRRWCLSGTPIQNSID 555 (743)
Q Consensus 505 ~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~-a~~R~lLTGTPiqN~l~ 555 (743)
|. ...+|||||+|++.- .....+..+. ....++|||||+...+.
T Consensus 571 --f~--~L~llVIDEahrfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 571 --FK--DLGLLIIDEEQRFGV---KQKEKLKELRTSVDVLTLSATPIPRTLH 615 (926)
T ss_pred --cc--cCCEEEeecccccch---hHHHHHHhcCCCCCEEEEecCCCHHHHH
Confidence 11 235799999999842 2334455553 45789999999876543
No 41
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.73 E-value=1.5e-07 Score=106.67 Aligned_cols=169 Identities=16% Similarity=0.132 Sum_probs=105.1
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+.++|.+++..++. ++..|+.-..|.|||+..+..++......
T Consensus 23 ~p~~iQ~~ai~~~~~-------g~d~l~~apTGsGKT~~~~lp~l~~l~~~----------------------------- 66 (434)
T PRK11192 23 RPTAIQAEAIPPALD-------GRDVLGSAPTGTGKTAAFLLPALQHLLDF----------------------------- 66 (434)
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHhhc-----------------------------
Confidence 478899999988873 23478888999999988765443211000
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh--hh
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV--EL 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~--~l 430 (743)
.........+|||+|.. |+.||.+++..+.... .+++..++|+....... ..
T Consensus 67 ------------------------~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~ 121 (434)
T PRK11192 67 ------------------------PRRKSGPPRILILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFS 121 (434)
T ss_pred ------------------------cccCCCCceEEEECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhc
Confidence 00001124589999975 7789988888765432 68888888876433222 12
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...||||+|.+.+...+.. ..+..-
T Consensus 122 ~~~~IlV~Tp~rl~~~~~~-------------------------------------------------------~~~~~~ 146 (434)
T PRK11192 122 ENQDIVVATPGRLLQYIKE-------------------------------------------------------ENFDCR 146 (434)
T ss_pred CCCCEEEEChHHHHHHHHc-------------------------------------------------------CCcCcc
Confidence 4679999999887643210 002223
Q ss_pred CccEEEEcCCcccCChh--hHHHHHHHhcc-cCcEEEEecCCCCCCHHHHH
Q 004604 511 GWFRVVLDEAQTIKNHR--TQVARACCSLR-AKRRWCLSGTPIQNSIDDLY 558 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~--Sk~skal~~L~-a~~R~lLTGTPiqN~l~EL~ 558 (743)
.+.+||+||||.+-... ......+..+. ....+++|+|+-...+.++.
T Consensus 147 ~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~ 197 (434)
T PRK11192 147 AVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFA 197 (434)
T ss_pred cCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHH
Confidence 45679999999985432 22222223332 24568999998654455543
No 42
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=9.5e-08 Score=109.53 Aligned_cols=163 Identities=14% Similarity=0.120 Sum_probs=105.4
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.++|+|.+++.-++.. +..++.-..|-|||+..+.-++.
T Consensus 11 ~~r~~Q~~ai~~~l~g-------~dvlv~apTGsGKTl~y~lp~l~---------------------------------- 49 (470)
T TIGR00614 11 SFRPVQLEVINAVLLG-------RDCFVVMPTGGGKSLCYQLPALC---------------------------------- 49 (470)
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEEcCCCCcHhHHHHHHHHH----------------------------------
Confidence 5899999999988742 34789999999999865333221
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh----
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV---- 428 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~---- 428 (743)
..+.+|||+|. +|+.+|...+... .+.+..+.+........
T Consensus 50 -----------------------------~~~~~lVi~P~~~L~~dq~~~l~~~-----gi~~~~l~~~~~~~~~~~i~~ 95 (470)
T TIGR00614 50 -----------------------------SDGITLVISPLISLMEDQVLQLKAS-----GIPATFLNSSQSKEQQKNVLT 95 (470)
T ss_pred -----------------------------cCCcEEEEecHHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHH
Confidence 01348999997 5788899988764 35566666654322111
Q ss_pred --hhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCC
Q 004604 429 --ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (743)
Q Consensus 429 --~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~ 506 (743)
....++++++|.+.+...... . ..
T Consensus 96 ~~~~~~~~il~~TPe~l~~~~~~-----------------------~-------------------------------~~ 121 (470)
T TIGR00614 96 DLKDGKIKLLYVTPEKCSASNRL-----------------------L-------------------------------QT 121 (470)
T ss_pred HHhcCCCCEEEECHHHHcCchhH-----------------------H-------------------------------HH
Confidence 224689999999987642100 0 00
Q ss_pred c-cccCccEEEEcCCcccCChhh---HHHHHH----HhcccCcEEEEecCCCCCCHHHHHHHHHhhC
Q 004604 507 L-AKVGWFRVVLDEAQTIKNHRT---QVARAC----CSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565 (743)
Q Consensus 507 L-~~i~w~rVIlDEAH~IKN~~S---k~skal----~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~ 565 (743)
+ ......+||+||||.+-.... ..+..+ ..+.....++|||||-.....|+...+.+-.
T Consensus 122 l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~ 188 (470)
T TIGR00614 122 LEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKN 188 (470)
T ss_pred HHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCC
Confidence 1 123467899999999864321 112222 2334557899999998877777777665433
No 43
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.67 E-value=2.3e-07 Score=106.07 Aligned_cols=158 Identities=20% Similarity=0.192 Sum_probs=101.4
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+.|+|.+++..++. ++..|+.-..|.|||...+..+......
T Consensus 26 ~~t~iQ~~ai~~~l~-------g~dvi~~a~TGsGKT~a~~lpil~~l~~------------------------------ 68 (460)
T PRK11776 26 EMTPIQAQSLPAILA-------GKDVIAQAKTGSGKTAAFGLGLLQKLDV------------------------------ 68 (460)
T ss_pred CCCHHHHHHHHHHhc-------CCCEEEECCCCCcHHHHHHHHHHHHhhh------------------------------
Confidence 478999999998874 2347899999999997654444321100
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC-hhh-h
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVE-L 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~-~~~-l 430 (743)
......+|||||. .|..||.+++.++......+++..++|+..... ... .
T Consensus 69 ---------------------------~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~ 121 (460)
T PRK11776 69 ---------------------------KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE 121 (460)
T ss_pred ---------------------------ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc
Confidence 0011248999997 578999999998754222578888888654321 111 2
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...+|||+|.+.+...+.+ ..+.--
T Consensus 122 ~~~~IvV~Tp~rl~~~l~~-------------------------------------------------------~~~~l~ 146 (460)
T PRK11776 122 HGAHIIVGTPGRILDHLRK-------------------------------------------------------GTLDLD 146 (460)
T ss_pred CCCCEEEEChHHHHHHHHc-------------------------------------------------------CCccHH
Confidence 4679999999888643211 001122
Q ss_pred CccEEEEcCCcccCCh--hhHHHHHHHhcc-cCcEEEEecCCC
Q 004604 511 GWFRVVLDEAQTIKNH--RTQVARACCSLR-AKRRWCLSGTPI 550 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~--~Sk~skal~~L~-a~~R~lLTGTPi 550 (743)
.+.+||+||||.+-+. .......+..+. ....+++|+|+-
T Consensus 147 ~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 147 ALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP 189 (460)
T ss_pred HCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc
Confidence 4568999999987543 223333444443 345799999974
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=98.66 E-value=3.4e-07 Score=109.54 Aligned_cols=103 Identities=21% Similarity=0.224 Sum_probs=74.2
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
..|+++|.+++.-+.. ....|++-..|-|||+.+...+.....
T Consensus 21 ~~l~~~Q~~ai~~l~~-------~~nvlv~apTGSGKTl~a~lail~~l~------------------------------ 63 (674)
T PRK01172 21 FELYDHQRMAIEQLRK-------GENVIVSVPTAAGKTLIAYSAIYETFL------------------------------ 63 (674)
T ss_pred CCCCHHHHHHHHHHhc-------CCcEEEECCCCchHHHHHHHHHHHHHH------------------------------
Confidence 3589999999987642 234799999999999987755542110
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhc
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA 431 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~ 431 (743)
..+.+++|+|. +|+.|+.+++.++... ..+|.++.|.... ....+.
T Consensus 64 ------------------------------~~~k~v~i~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~-~~~~~~ 110 (674)
T PRK01172 64 ------------------------------AGLKSIYIVPLRSLAMEKYEELSRLRSL--GMRVKISIGDYDD-PPDFIK 110 (674)
T ss_pred ------------------------------hCCcEEEEechHHHHHHHHHHHHHHhhc--CCeEEEEeCCCCC-Chhhhc
Confidence 01358999997 6889999999876432 5677777776533 334456
Q ss_pred cCCEEEeehhhhhc
Q 004604 432 KYDVVLTTYSIVTN 445 (743)
Q Consensus 432 ~~DVVITTY~~l~~ 445 (743)
.+||+|+|++.+..
T Consensus 111 ~~dIiv~Tpek~~~ 124 (674)
T PRK01172 111 RYDVVILTSEKADS 124 (674)
T ss_pred cCCEEEECHHHHHH
Confidence 78999999987653
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=98.65 E-value=4e-07 Score=109.96 Aligned_cols=103 Identities=18% Similarity=0.115 Sum_probs=74.8
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.|+|+|.+++.-++. .+...|++-..|-|||+.+...+... .
T Consensus 23 ~l~p~Q~~ai~~~~~------~g~nvlv~APTGSGKTlia~lail~~--l------------------------------ 64 (737)
T PRK02362 23 ELYPPQAEAVEAGLL------DGKNLLAAIPTASGKTLIAELAMLKA--I------------------------------ 64 (737)
T ss_pred cCCHHHHHHHHHHHh------CCCcEEEECCCcchHHHHHHHHHHHH--H------------------------------
Confidence 599999999975432 12347999999999999876554321 1
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhcc
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~ 432 (743)
...+.+|+|+|. +|+.|+.+++.++.+. .++|.++.|..... ...+..
T Consensus 65 ----------------------------~~~~kal~i~P~raLa~q~~~~~~~~~~~--g~~v~~~tGd~~~~-~~~l~~ 113 (737)
T PRK02362 65 ----------------------------ARGGKALYIVPLRALASEKFEEFERFEEL--GVRVGISTGDYDSR-DEWLGD 113 (737)
T ss_pred ----------------------------hcCCcEEEEeChHHHHHHHHHHHHHhhcC--CCEEEEEeCCcCcc-ccccCC
Confidence 012458999997 6889999999976432 57888998875432 344567
Q ss_pred CCEEEeehhhhhc
Q 004604 433 YDVVLTTYSIVTN 445 (743)
Q Consensus 433 ~DVVITTY~~l~~ 445 (743)
.||+|+|++.+..
T Consensus 114 ~~IiV~Tpek~~~ 126 (737)
T PRK02362 114 NDIIVATSEKVDS 126 (737)
T ss_pred CCEEEECHHHHHH
Confidence 8999999987754
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=98.64 E-value=6.3e-07 Score=107.99 Aligned_cols=160 Identities=21% Similarity=0.167 Sum_probs=105.3
Q ss_pred ccchhhHHHHH-HHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 274 NLLKHQKIALA-WMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 274 ~L~phQ~~gl~-wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
.|+|+|.+++. ++.. +...|++-..|-|||+.+...+.....
T Consensus 23 ~l~~~Q~~ai~~~~~~-------g~nvlv~apTGsGKT~~~~l~il~~l~------------------------------ 65 (720)
T PRK00254 23 ELYPPQAEALKSGVLE-------GKNLVLAIPTASGKTLVAEIVMVNKLL------------------------------ 65 (720)
T ss_pred CCCHHHHHHHHHHHhC-------CCcEEEECCCCcHHHHHHHHHHHHHHH------------------------------
Confidence 58999999996 4442 234799999999999988544432110
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhc
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA 431 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~ 431 (743)
...+.+|+|||. .|+.|+.+++.++.. ..++|..++|.... +...+.
T Consensus 66 -----------------------------~~~~~~l~l~P~~aLa~q~~~~~~~~~~--~g~~v~~~~Gd~~~-~~~~~~ 113 (720)
T PRK00254 66 -----------------------------REGGKAVYLVPLKALAEEKYREFKDWEK--LGLRVAMTTGDYDS-TDEWLG 113 (720)
T ss_pred -----------------------------hcCCeEEEEeChHHHHHHHHHHHHHHhh--cCCEEEEEeCCCCC-chhhhc
Confidence 012358999997 578999999987643 25788889987543 234467
Q ss_pred cCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccC
Q 004604 432 KYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVG 511 (743)
Q Consensus 432 ~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~ 511 (743)
.+||+|+|++.+..-+.... ..+ -.
T Consensus 114 ~~~IiV~Tpe~~~~ll~~~~-----------------------------------------------------~~l--~~ 138 (720)
T PRK00254 114 KYDIIIATAEKFDSLLRHGS-----------------------------------------------------SWI--KD 138 (720)
T ss_pred cCCEEEEcHHHHHHHHhCCc-----------------------------------------------------hhh--hc
Confidence 89999999987754221100 001 13
Q ss_pred ccEEEEcCCcccCCh--hhHHHHHHHhc-ccCcEEEEecCCCCCCHHHHHH
Q 004604 512 WFRVVLDEAQTIKNH--RTQVARACCSL-RAKRRWCLSGTPIQNSIDDLYS 559 (743)
Q Consensus 512 w~rVIlDEAH~IKN~--~Sk~skal~~L-~a~~R~lLTGTPiqN~l~EL~s 559 (743)
..+||+||+|.+-.. .......+..+ ...+.++||+|.- | ..|+-.
T Consensus 139 l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~-n-~~~la~ 187 (720)
T PRK00254 139 VKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG-N-AEELAE 187 (720)
T ss_pred CCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC-C-HHHHHH
Confidence 468999999999542 23333344444 3457789999973 3 566654
No 47
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.63 E-value=3.8e-07 Score=104.16 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=73.8
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+.|+|.+++.-+++ ++..|+.-..|.|||+..+..++..... ...
T Consensus 23 ~pt~iQ~~ai~~il~-------g~dvlv~apTGsGKTla~~lpil~~l~~---------------------~~~------ 68 (456)
T PRK10590 23 EPTPIQQQAIPAVLE-------GRDLMASAQTGTGKTAGFTLPLLQHLIT---------------------RQP------ 68 (456)
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHhhh---------------------ccc------
Confidence 578999999988873 2347888999999999876554322110 000
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-Ch-hhh
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DP-VEL 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~-~~-~~l 430 (743)
. ........+|||||. .|+.||.+++.++.... .+++....|..... .. ...
T Consensus 69 -----------------------~-~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~ 123 (456)
T PRK10590 69 -----------------------H-AKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLR 123 (456)
T ss_pred -----------------------c-cccCCCceEEEEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHc
Confidence 0 000111348999997 57799999999876532 56777777665322 11 123
Q ss_pred ccCCEEEeehhhhhc
Q 004604 431 AKYDVVLTTYSIVTN 445 (743)
Q Consensus 431 ~~~DVVITTY~~l~~ 445 (743)
..+||||+|.+.+..
T Consensus 124 ~~~~IiV~TP~rL~~ 138 (456)
T PRK10590 124 GGVDVLVATPGRLLD 138 (456)
T ss_pred CCCcEEEEChHHHHH
Confidence 568999999988864
No 48
>PTZ00110 helicase; Provisional
Probab=98.59 E-value=6.9e-07 Score=104.19 Aligned_cols=161 Identities=15% Similarity=0.117 Sum_probs=98.9
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+.|+|.+++..++. ++..|+.-..|.|||+..+.-++.....+.
T Consensus 152 ~pt~iQ~~aip~~l~-------G~dvI~~ApTGSGKTlaylLP~l~~i~~~~---------------------------- 196 (545)
T PTZ00110 152 EPTPIQVQGWPIALS-------GRDMIGIAETGSGKTLAFLLPAIVHINAQP---------------------------- 196 (545)
T ss_pred CCCHHHHHHHHHHhc-------CCCEEEEeCCCChHHHHHHHHHHHHHHhcc----------------------------
Confidence 488999999987773 234688999999999986432221111000
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-Chh-hh
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPV-EL 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~-~~~-~l 430 (743)
.........+|||||. .|+.||.+++.++.... .+++.+.+|..... ... ..
T Consensus 197 ------------------------~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~ 251 (545)
T PTZ00110 197 ------------------------LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALR 251 (545)
T ss_pred ------------------------cccCCCCcEEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHH
Confidence 0000112348999998 47899999999886543 56666666654322 112 22
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...+|||+|.+.|...+.. ..+.--
T Consensus 252 ~~~~IlVaTPgrL~d~l~~-------------------------------------------------------~~~~l~ 276 (545)
T PTZ00110 252 RGVEILIACPGRLIDFLES-------------------------------------------------------NVTNLR 276 (545)
T ss_pred cCCCEEEECHHHHHHHHHc-------------------------------------------------------CCCChh
Confidence 4579999999887643211 001112
Q ss_pred CccEEEEcCCcccCCh--hhHHHHHHHhccc-CcEEEEecCC
Q 004604 511 GWFRVVLDEAQTIKNH--RTQVARACCSLRA-KRRWCLSGTP 549 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~--~Sk~skal~~L~a-~~R~lLTGTP 549 (743)
...+|||||||++-.. .-+..+.+..+.. ...+++|+|.
T Consensus 277 ~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW 318 (545)
T ss_pred hCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 3567999999998653 2334444455543 4568899996
No 49
>PTZ00424 helicase 45; Provisional
Probab=98.58 E-value=5.4e-07 Score=100.77 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=98.7
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+.|+|..++..++.. ...|+.-..|.|||+..+..+......
T Consensus 50 ~~~~~Q~~ai~~i~~~-------~d~ii~apTGsGKT~~~~l~~l~~~~~------------------------------ 92 (401)
T PTZ00424 50 KPSAIQQRGIKPILDG-------YDTIGQAQSGTGKTATFVIAALQLIDY------------------------------ 92 (401)
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHhcC------------------------------
Confidence 5899999999988743 346888999999998765444321100
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC-hhhh-
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVEL- 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~-~~~l- 430 (743)
......+|||+|. .|+.|+.+.+...... ..+.+....|.....+ ...+
T Consensus 93 ---------------------------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~ 144 (401)
T PTZ00424 93 ---------------------------DLNACQALILAPTRELAQQIQKVVLALGDY-LKVRCHACVGGTVVRDDINKLK 144 (401)
T ss_pred ---------------------------CCCCceEEEECCCHHHHHHHHHHHHHHhhh-cCceEEEEECCcCHHHHHHHHc
Confidence 0112458999997 4778888888776542 2455555566543222 1222
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...+|+|+|.+.+...+.+ ..+.--
T Consensus 145 ~~~~Ivv~Tp~~l~~~l~~-------------------------------------------------------~~~~l~ 169 (401)
T PTZ00424 145 AGVHMVVGTPGRVYDMIDK-------------------------------------------------------RHLRVD 169 (401)
T ss_pred CCCCEEEECcHHHHHHHHh-------------------------------------------------------CCcccc
Confidence 3469999999887542210 001122
Q ss_pred CccEEEEcCCcccCC--hhhHHHHHHHhccc-CcEEEEecCCC
Q 004604 511 GWFRVVLDEAQTIKN--HRTQVARACCSLRA-KRRWCLSGTPI 550 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN--~~Sk~skal~~L~a-~~R~lLTGTPi 550 (743)
.+++||+||||.+-. ........+..+.. ...+++|+|+-
T Consensus 170 ~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 170 DLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP 212 (401)
T ss_pred cccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 457899999999853 33444555555533 46788999964
No 50
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.57 E-value=1.1e-06 Score=102.67 Aligned_cols=169 Identities=19% Similarity=0.208 Sum_probs=115.5
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
..||+||.+-+.-.+ +...|+|--+|+|||..|+-++..+.+.
T Consensus 61 ~~lR~YQ~eivq~AL--------gkNtii~lPTG~GKTfIAa~Vm~nh~rw----------------------------- 103 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL--------GKNTIIALPTGSGKTFIAAVIMKNHFEW----------------------------- 103 (746)
T ss_pred ccccHHHHHHhHHhh--------cCCeEEEeecCCCccchHHHHHHHHHhc-----------------------------
Confidence 479999999887766 2347999999999999887777543221
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCC--CCChhh
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSR--TKDPVE 429 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r--~~~~~~ 429 (743)
.+.+++++.+|.. |+.|=..++....- .-.+.+..|+.. ......
T Consensus 104 -----------------------------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~---~~~~T~~l~~~~~~~~r~~i 151 (746)
T KOG0354|consen 104 -----------------------------RPKGKVVFLAPTRPLVNQQIACFSIYLI---PYSVTGQLGDTVPRSNRGEI 151 (746)
T ss_pred -----------------------------CCcceEEEeeCCchHHHHHHHHHhhccC---cccceeeccCccCCCchhhh
Confidence 3446799999985 66666677776543 245666666543 333345
Q ss_pred hccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccc
Q 004604 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (743)
Q Consensus 430 l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (743)
....+|++.|-.++.+++... ....
T Consensus 152 ~~s~~vff~TpQil~ndL~~~-------------------------------------------------------~~~~ 176 (746)
T KOG0354|consen 152 VASKRVFFRTPQILENDLKSG-------------------------------------------------------LHDE 176 (746)
T ss_pred hcccceEEeChHhhhhhcccc-------------------------------------------------------cccc
Confidence 678899999999998865320 0111
Q ss_pred -cCccEEEEcCCccc-CChh-hHHHHHHHhccc--CcEEEEecCCCCCCHHHHHHHHHhhCC
Q 004604 510 -VGWFRVVLDEAQTI-KNHR-TQVARACCSLRA--KRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (743)
Q Consensus 510 -i~w~rVIlDEAH~I-KN~~-Sk~skal~~L~a--~~R~lLTGTPiqN~l~EL~sLl~FL~p 566 (743)
-.|-++|+||||+- ||.. +...+.+..++. .+.++|||||= ++.++....+.=|..
T Consensus 177 ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~a 237 (746)
T KOG0354|consen 177 LSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCA 237 (746)
T ss_pred cceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhe
Confidence 34678999999996 5532 444445555433 36799999998 777777776665544
No 51
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.55 E-value=8.1e-07 Score=103.08 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=102.4
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+.|+|.+++..++.. +-.|+.-..|-|||+..+.-+...-....
T Consensus 143 ~ptpiQ~~aip~il~g-------~dviv~ApTGSGKTlayllPil~~l~~~~---------------------------- 187 (518)
T PLN00206 143 FPTPIQMQAIPAALSG-------RSLLVSADTGSGKTASFLVPIISRCCTIR---------------------------- 187 (518)
T ss_pred CCCHHHHHHHHHHhcC-------CCEEEEecCCCCccHHHHHHHHHHHHhhc----------------------------
Confidence 5889999999888732 34689999999999987655432111000
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-Chhh-h
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVE-L 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~-~~~~-l 430 (743)
... ........+|||+|.. |..|+.+++..+...- .+++..+.|+.... .... .
T Consensus 188 ----~~~------------------~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~ 244 (518)
T PLN00206 188 ----SGH------------------PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQ 244 (518)
T ss_pred ----ccc------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhc
Confidence 000 0001123589999974 7799999988775432 45665555554322 2222 2
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...+|||+|.+.+..-+.+. .+.--
T Consensus 245 ~~~~IiV~TPgrL~~~l~~~-------------------------------------------------------~~~l~ 269 (518)
T PLN00206 245 QGVELIVGTPGRLIDLLSKH-------------------------------------------------------DIELD 269 (518)
T ss_pred CCCCEEEECHHHHHHHHHcC-------------------------------------------------------Cccch
Confidence 45799999998876432110 01112
Q ss_pred CccEEEEcCCcccCC--hhhHHHHHHHhcccCcEEEEecCCC
Q 004604 511 GWFRVVLDEAQTIKN--HRTQVARACCSLRAKRRWCLSGTPI 550 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN--~~Sk~skal~~L~a~~R~lLTGTPi 550 (743)
...+||+||||.+-. ......+.+..+.....+++|||.-
T Consensus 270 ~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 270 NVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred heeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCC
Confidence 345799999999854 3344555556666778899999963
No 52
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.55 E-value=4.2e-07 Score=107.11 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=106.8
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.++|+|.+++.-++. ++..+++-..|-|||+.....++.
T Consensus 13 ~fr~~Q~~~i~~il~-------g~dvlv~~PTG~GKTl~y~lpal~---------------------------------- 51 (591)
T TIGR01389 13 DFRPGQEEIISHVLD-------GRDVLVVMPTGGGKSLCYQVPALL---------------------------------- 51 (591)
T ss_pred CCCHHHHHHHHHHHc-------CCCEEEEcCCCccHhHHHHHHHHH----------------------------------
Confidence 589999999988873 234799999999999987543321
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh----
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV---- 428 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~---- 428 (743)
..+.+|||+|. +|+.++.+.+... .+.+..+++........
T Consensus 52 -----------------------------~~g~~lVisPl~sL~~dq~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~ 97 (591)
T TIGR01389 52 -----------------------------LKGLTVVISPLISLMKDQVDQLRAA-----GVAAAYLNSTLSAKEQQDIEK 97 (591)
T ss_pred -----------------------------cCCcEEEEcCCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHH
Confidence 01348999996 6889999998874 35666677654332211
Q ss_pred --hhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCC
Q 004604 429 --ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (743)
Q Consensus 429 --~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~ 506 (743)
....++++++|.+.+.+.. |. ..
T Consensus 98 ~l~~~~~~il~~tpe~l~~~~------------------------~~-------------------------------~~ 122 (591)
T TIGR01389 98 ALVNGELKLLYVAPERLEQDY------------------------FL-------------------------------NM 122 (591)
T ss_pred HHhCCCCCEEEEChhHhcChH------------------------HH-------------------------------HH
Confidence 1256899999988875421 00 00
Q ss_pred ccccCccEEEEcCCcccCChh-------hHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHh
Q 004604 507 LAKVGWFRVVLDEAQTIKNHR-------TQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563 (743)
Q Consensus 507 L~~i~w~rVIlDEAH~IKN~~-------Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~F 563 (743)
+......+||+||||.+-... .+.......+.....++||||+-.....++...+.+
T Consensus 123 l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~ 186 (591)
T TIGR01389 123 LQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRL 186 (591)
T ss_pred HhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 233457789999999985422 122222233344558999999988877787776653
No 53
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.55 E-value=5.3e-07 Score=106.52 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=103.3
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.++|+|.+++.-++. ++..|+.-..|-|||+..+.-++..
T Consensus 25 ~~r~~Q~~ai~~il~-------g~dvlv~apTGsGKTl~y~lpal~~--------------------------------- 64 (607)
T PRK11057 25 QFRPGQQEIIDAVLS-------GRDCLVVMPTGGGKSLCYQIPALVL--------------------------------- 64 (607)
T ss_pred CCCHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHHHc---------------------------------
Confidence 589999999988773 2447888999999998654333210
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh----
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV---- 428 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~---- 428 (743)
.+.+|||+|. +|+.+|.+.+... .+.+..+++........
T Consensus 65 ------------------------------~g~tlVisPl~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~ 109 (607)
T PRK11057 65 ------------------------------DGLTLVVSPLISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMA 109 (607)
T ss_pred ------------------------------CCCEEEEecHHHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHH
Confidence 1348999997 6788899988764 34455555543222111
Q ss_pred --hhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCC
Q 004604 429 --ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (743)
Q Consensus 429 --~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~ 506 (743)
...+.+++++|.+.+..+. |. ..
T Consensus 110 ~~~~g~~~il~~tPe~l~~~~------------------------~~-------------------------------~~ 134 (607)
T PRK11057 110 GCRTGQIKLLYIAPERLMMDN------------------------FL-------------------------------EH 134 (607)
T ss_pred HHhCCCCcEEEEChHHhcChH------------------------HH-------------------------------HH
Confidence 1245788888888775320 00 01
Q ss_pred ccccCccEEEEcCCcccCChh---hHHHHHHHh----cccCcEEEEecCCCCCCHHHHHHHHHhh
Q 004604 507 LAKVGWFRVVLDEAQTIKNHR---TQVARACCS----LRAKRRWCLSGTPIQNSIDDLYSYFRFL 564 (743)
Q Consensus 507 L~~i~w~rVIlDEAH~IKN~~---Sk~skal~~----L~a~~R~lLTGTPiqN~l~EL~sLl~FL 564 (743)
+....+.+||+||||.+-... ...++.+.. +.....++||||+-.....++...+.+-
T Consensus 135 l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~ 199 (607)
T PRK11057 135 LAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLN 199 (607)
T ss_pred HhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCC
Confidence 233456789999999986432 112223332 3345689999999887777777766543
No 54
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.48 E-value=2.2e-06 Score=101.42 Aligned_cols=108 Identities=18% Similarity=0.127 Sum_probs=71.7
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+.|+|.+++..++.. +-.|+.-..|.|||+..+..++..-..
T Consensus 28 ~ptpiQ~~ai~~ll~g-------~dvl~~ApTGsGKT~af~lpll~~l~~------------------------------ 70 (629)
T PRK11634 28 KPSPIQAECIPHLLNG-------RDVLGMAQTGSGKTAAFSLPLLHNLDP------------------------------ 70 (629)
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEEcCCCCcHHHHHHHHHHHHhhh------------------------------
Confidence 5889999999988742 235777889999999754333211000
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC-hhh-h
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVE-L 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~-~~~-l 430 (743)
......+|||||. .|+.||.+++.++......++++.++|...... ... .
T Consensus 71 ---------------------------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~ 123 (629)
T PRK11634 71 ---------------------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 (629)
T ss_pred ---------------------------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc
Confidence 0111348999997 578999999987754322577887777653221 111 2
Q ss_pred ccCCEEEeehhhhhc
Q 004604 431 AKYDVVLTTYSIVTN 445 (743)
Q Consensus 431 ~~~DVVITTY~~l~~ 445 (743)
...+|||+|.+.+..
T Consensus 124 ~~~~IVVgTPgrl~d 138 (629)
T PRK11634 124 QGPQIVVGTPGRLLD 138 (629)
T ss_pred CCCCEEEECHHHHHH
Confidence 357999999988764
No 55
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.47 E-value=1.7e-06 Score=99.47 Aligned_cols=114 Identities=19% Similarity=0.226 Sum_probs=73.2
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+++||.+++..+++ ++..|++-..|.|||+..+.-++..... . . ..
T Consensus 109 ~~~~iQ~~ai~~~~~-------G~dvi~~apTGSGKTlay~lpil~~l~~-~-~-----------------~~------- 155 (475)
T PRK01297 109 YCTPIQAQVLGYTLA-------GHDAIGRAQTGTGKTAAFLISIINQLLQ-T-P-----------------PP------- 155 (475)
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHh-c-C-----------------cc-------
Confidence 489999999988763 2346888899999998765444321100 0 0 00
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-Chhhh-
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVEL- 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~-~~~~l- 430 (743)
. .........|||+|. .|..||.+++..+.... .+++..++|+.... ....+
T Consensus 156 ----------------------~--~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~ 210 (475)
T PRK01297 156 ----------------------K--ERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLE 210 (475)
T ss_pred ----------------------c--ccccCCceEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHh
Confidence 0 000112358999997 57899999998876432 57888888865322 12222
Q ss_pred -ccCCEEEeehhhhhc
Q 004604 431 -AKYDVVLTTYSIVTN 445 (743)
Q Consensus 431 -~~~DVVITTY~~l~~ 445 (743)
...+|+|+|.+.+..
T Consensus 211 ~~~~~Iiv~TP~~Ll~ 226 (475)
T PRK01297 211 ARFCDILVATPGRLLD 226 (475)
T ss_pred CCCCCEEEECHHHHHH
Confidence 357999999998853
No 56
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.46 E-value=1.4e-06 Score=98.58 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=73.6
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+.|+|.+++.-++. ++..|+.-..|.|||+..+..+........ .
T Consensus 30 ~pt~iQ~~aip~il~-------g~dvi~~ApTGsGKTla~llp~l~~l~~~~---------------------~------ 75 (423)
T PRK04837 30 NCTPIQALALPLTLA-------GRDVAGQAQTGTGKTMAFLTATFHYLLSHP---------------------A------ 75 (423)
T ss_pred CCCHHHHHHHHHHhC-------CCcEEEECCCCchHHHHHHHHHHHHHHhcc---------------------c------
Confidence 467899999987773 234688889999999987654432111000 0
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC-hhhh-
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVEL- 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~-~~~l- 430 (743)
. .........+|||||.. |+.||.+++..+.... .+++.+++|+..... ...+
T Consensus 76 ----------------------~-~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~ 131 (423)
T PRK04837 76 ----------------------P-EDRKVNQPRALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLE 131 (423)
T ss_pred ----------------------c-cccccCCceEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhc
Confidence 0 00001123589999974 7799999988776432 688888888654322 1222
Q ss_pred ccCCEEEeehhhhhc
Q 004604 431 AKYDVVLTTYSIVTN 445 (743)
Q Consensus 431 ~~~DVVITTY~~l~~ 445 (743)
...||+|+|.+.+..
T Consensus 132 ~~~~IlV~TP~~l~~ 146 (423)
T PRK04837 132 SGVDILIGTTGRLID 146 (423)
T ss_pred CCCCEEEECHHHHHH
Confidence 357999999998864
No 57
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.44 E-value=1.7e-06 Score=103.82 Aligned_cols=166 Identities=22% Similarity=0.190 Sum_probs=113.1
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.|+++|..+|.-.+.. ....|+|=-.|-|||+.++..|+..-.
T Consensus 31 el~~~qq~av~~~~~~------~~N~li~aPTgsGKTlIA~lai~~~l~------------------------------- 73 (766)
T COG1204 31 ELFNPQQEAVEKGLLS------DENVLISAPTGSGKTLIALLAILSTLL------------------------------- 73 (766)
T ss_pred HhhHHHHHHhhccccC------CCcEEEEcCCCCchHHHHHHHHHHHHH-------------------------------
Confidence 7999999999654422 234699999999999988877753211
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhcc
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~ 432 (743)
...++.+-|||. +|..+=.+||.+|-.- .++|.+++|...... ..+.+
T Consensus 74 ----------------------------~~~~k~vYivPlkALa~Ek~~~~~~~~~~--GirV~~~TgD~~~~~-~~l~~ 122 (766)
T COG1204 74 ----------------------------EGGGKVVYIVPLKALAEEKYEEFSRLEEL--GIRVGISTGDYDLDD-ERLAR 122 (766)
T ss_pred ----------------------------hcCCcEEEEeChHHHHHHHHHHhhhHHhc--CCEEEEecCCcccch-hhhcc
Confidence 002568999996 6888888888844332 699999999876544 77899
Q ss_pred CCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCc
Q 004604 433 YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGW 512 (743)
Q Consensus 433 ~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w 512 (743)
+|||||||+.+-+-..+.. ..-...
T Consensus 123 ~~ViVtT~EK~Dsl~R~~~-------------------------------------------------------~~~~~V 147 (766)
T COG1204 123 YDVIVTTPEKLDSLTRKRP-------------------------------------------------------SWIEEV 147 (766)
T ss_pred CCEEEEchHHhhHhhhcCc-------------------------------------------------------chhhcc
Confidence 9999999998865332211 112345
Q ss_pred cEEEEcCCcccCCh-h-----hHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCC
Q 004604 513 FRVVLDEAQTIKNH-R-----TQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYD 567 (743)
Q Consensus 513 ~rVIlDEAH~IKN~-~-----Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~ 567 (743)
++||+||+|.+... + +..+++...-..-+.+.||+|= .|..|+- .||+-.
T Consensus 148 ~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA---~wL~a~ 203 (766)
T COG1204 148 DLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVA---DWLNAK 203 (766)
T ss_pred cEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHH---HHhCCc
Confidence 78999999999766 2 3333332222334778999992 3455554 455544
No 58
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.42 E-value=2.7e-06 Score=99.83 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=75.6
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+.|+|.+++..++. ++..|+.-..|.|||+..+..++...... . . .
T Consensus 31 ~ptpiQ~~~ip~~l~-------G~Dvi~~ApTGSGKTlafllpil~~l~~~--~-------------------~-----~ 77 (572)
T PRK04537 31 RCTPIQALTLPVALP-------GGDVAGQAQTGTGKTLAFLVAVMNRLLSR--P-------------------A-----L 77 (572)
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEEcCCCCcHHHHHHHHHHHHHHhc--c-------------------c-----c
Confidence 578999999999883 23468888999999998766654321100 0 0 0
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh-hhh-
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VEL- 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~-~~l- 430 (743)
.........+|||||. .|+.|+.+++.++... ..+++..++|....... ..+
T Consensus 78 ------------------------~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~-~~i~v~~l~Gg~~~~~q~~~l~ 132 (572)
T PRK04537 78 ------------------------ADRKPEDPRALILAPTRELAIQIHKDAVKFGAD-LGLRFALVYGGVDYDKQRELLQ 132 (572)
T ss_pred ------------------------cccccCCceEEEEeCcHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHHh
Confidence 0000112358999998 4789999999887654 36788888887543222 122
Q ss_pred ccCCEEEeehhhhhc
Q 004604 431 AKYDVVLTTYSIVTN 445 (743)
Q Consensus 431 ~~~DVVITTY~~l~~ 445 (743)
...||||+|.+.|..
T Consensus 133 ~~~dIiV~TP~rL~~ 147 (572)
T PRK04537 133 QGVDVIIATPGRLID 147 (572)
T ss_pred CCCCEEEECHHHHHH
Confidence 357999999988764
No 59
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.38 E-value=3e-06 Score=97.76 Aligned_cols=160 Identities=19% Similarity=0.261 Sum_probs=113.6
Q ss_pred cccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCC
Q 004604 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (743)
Q Consensus 271 ~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (743)
+.++|-..|+.++.=+..-..++. ...=+|--|+|-|||+.|+..++..-..
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~-~M~RLlQGDVGSGKTvVA~laml~ai~~--------------------------- 310 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPV-PMNRLLQGDVGSGKTVVALLAMLAAIEA--------------------------- 310 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCch-hhHHHhccCcCCCHHHHHHHHHHHHHHc---------------------------
Confidence 356788899999987765444332 1223677789999999887666432110
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhH-HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhh
Q 004604 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL-RQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429 (743)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll-~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~ 429 (743)
..-+.+.+|..+| .|=...+.+|+++- .++|....|.-+.+....
T Consensus 311 ---------------------------------G~Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~ 356 (677)
T COG1200 311 ---------------------------------GYQAALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKE 356 (677)
T ss_pred ---------------------------------CCeeEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHH
Confidence 1226789999876 89999999999875 699999999876654433
Q ss_pred ------hccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccC
Q 004604 430 ------LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (743)
Q Consensus 430 ------l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (743)
-+..|+||-|+..+.-.+.
T Consensus 357 ~l~~l~~G~~~ivVGTHALiQd~V~------------------------------------------------------- 381 (677)
T COG1200 357 ILEQLASGEIDIVVGTHALIQDKVE------------------------------------------------------- 381 (677)
T ss_pred HHHHHhCCCCCEEEEcchhhhccee-------------------------------------------------------
Confidence 2568999999988864321
Q ss_pred CCCccccCccEEEEcCCcccCChhhHHHHHHHhc-c-cCcEEEEecCCCCCCHH
Q 004604 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSL-R-AKRRWCLSGTPIQNSID 555 (743)
Q Consensus 504 ~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L-~-a~~R~lLTGTPiqN~l~ 555 (743)
| .+..+||+||=|++. ...-..++.- . ..+.+.||+|||.-++.
T Consensus 382 ---F--~~LgLVIiDEQHRFG---V~QR~~L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 382 ---F--HNLGLVIIDEQHRFG---VHQRLALREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred ---e--cceeEEEEecccccc---HHHHHHHHHhCCCCCcEEEEeCCCchHHHH
Confidence 1 123579999999995 3333444444 3 57999999999999875
No 60
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.35 E-value=5.7e-06 Score=98.86 Aligned_cols=105 Identities=18% Similarity=0.170 Sum_probs=74.2
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...|.++|.+++..+.... ...-.+|.-..|-|||...+.++.....
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~----~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----------------------------- 188 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAA----GFSPFLLDGVTGSGKTEVYLQAIAEVLA----------------------------- 188 (679)
T ss_pred CCCCCHHHHHHHHHHHhcc----CCCcEEEECCCCChHHHHHHHHHHHHHH-----------------------------
Confidence 3469999999999887532 1123688889999999988776642110
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh--
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV-- 428 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~-- 428 (743)
..+.+||+||. .|..||.+.+.+.++ .++.++||.....+..
T Consensus 189 -------------------------------~g~~vLvLvPt~~L~~Q~~~~l~~~fg----~~v~~~~s~~s~~~r~~~ 233 (679)
T PRK05580 189 -------------------------------QGKQALVLVPEIALTPQMLARFRARFG----APVAVLHSGLSDGERLDE 233 (679)
T ss_pred -------------------------------cCCeEEEEeCcHHHHHHHHHHHHHHhC----CCEEEEECCCCHHHHHHH
Confidence 01358999997 578999999998874 5688899875433221
Q ss_pred ----hhccCCEEEeehhhhh
Q 004604 429 ----ELAKYDVVLTTYSIVT 444 (743)
Q Consensus 429 ----~l~~~DVVITTY~~l~ 444 (743)
..+..+|||.|.+.+.
T Consensus 234 ~~~~~~g~~~IVVgTrsal~ 253 (679)
T PRK05580 234 WRKAKRGEAKVVIGARSALF 253 (679)
T ss_pred HHHHHcCCCCEEEeccHHhc
Confidence 1246799999986653
No 61
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.33 E-value=3.4e-06 Score=102.50 Aligned_cols=158 Identities=22% Similarity=0.231 Sum_probs=105.4
Q ss_pred cchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcccc
Q 004604 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLD 354 (743)
Q Consensus 275 L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 354 (743)
||+||.+|+..+.+- +.-|+.--+|-|||..-+.-|....-
T Consensus 71 lY~HQ~~A~~~~~~G-------~~vvVtTgTgSGKTe~FllPIld~~l-------------------------------- 111 (851)
T COG1205 71 LYSHQVDALRLIREG-------RNVVVTTGTGSGKTESFLLPILDHLL-------------------------------- 111 (851)
T ss_pred ccHHHHHHHHHHHCC-------CCEEEECCCCCchhHHHHHHHHHHHh--------------------------------
Confidence 999999999999843 34699999999999988777753221
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhH-HHHHHHHHHhCCCCC-CcEEEEEeCCCCCCChh--hh
Q 004604 355 KVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL-RQWARELEDKVPDKA-ALSVLIYHGGSRTKDPV--EL 430 (743)
Q Consensus 355 ~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll-~qW~~Ei~k~~~~~~-~l~V~iy~G~~r~~~~~--~l 430 (743)
+.+..+.|+|-|...| ..=.+.|.++..... .+++.+|+|........ ..
T Consensus 112 --------------------------~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~ 165 (851)
T COG1205 112 --------------------------RDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIR 165 (851)
T ss_pred --------------------------hCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHh
Confidence 1223468999998655 444455555543321 58899999987654442 34
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...||+||+|+++-..+-+.... ..+..-
T Consensus 166 ~pp~IllTNpdMLh~~llr~~~~---------------------------------------------------~~~~~~ 194 (851)
T COG1205 166 NPPDILLTNPDMLHYLLLRNHDA---------------------------------------------------WLWLLR 194 (851)
T ss_pred CCCCEEEeCHHHHHHHhccCcch---------------------------------------------------HHHHHh
Confidence 67899999999997632210000 001122
Q ss_pred CccEEEEcCCcccCCh-hhHHHHHHHhcc--------cCcEEEEecC
Q 004604 511 GWFRVVLDEAQTIKNH-RTQVARACCSLR--------AKRRWCLSGT 548 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~-~Sk~skal~~L~--------a~~R~lLTGT 548 (743)
.+.+|||||+|.++.- .|-.+-.+++|. ....+|.|||
T Consensus 195 ~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 195 NLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred cCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 2778999999999874 355666666652 2345888888
No 62
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.29 E-value=8e-06 Score=90.44 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccccccc
Q 004604 278 HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357 (743)
Q Consensus 278 hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k 357 (743)
||.+++.-|.+.... -.+++-..|-|||..++..+...
T Consensus 1 hQ~~~~~~~~~~~~~-----~~~i~apTGsGKT~~~~~~~l~~------------------------------------- 38 (357)
T TIGR03158 1 HQVATFEALQSKDAD-----IIFNTAPTGAGKTLAWLTPLLHG------------------------------------- 38 (357)
T ss_pred CHHHHHHHHHcCCCC-----EEEEECCCCCCHHHHHHHHHHHc-------------------------------------
Confidence 899999988854321 14778899999999876655310
Q ss_pred ccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCC---CCCCcEEEEEeCCCCCC--------
Q 004604 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVP---DKAALSVLIYHGGSRTK-------- 425 (743)
Q Consensus 358 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~---~~~~l~V~iy~G~~r~~-------- 425 (743)
..++++|+|. +++.+|.+.+.+++. ......+..+.|.....
T Consensus 39 --------------------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~ 92 (357)
T TIGR03158 39 --------------------------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDK 92 (357)
T ss_pred --------------------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhh
Confidence 1247999996 577888888888762 11256777788752110
Q ss_pred ----C----------hhhhccCCEEEeehhhhhc
Q 004604 426 ----D----------PVELAKYDVVLTTYSIVTN 445 (743)
Q Consensus 426 ----~----------~~~l~~~DVVITTY~~l~~ 445 (743)
. .......++++|+++++..
T Consensus 93 ~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~ 126 (357)
T TIGR03158 93 VGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVY 126 (357)
T ss_pred cccCccchhhhhHHHHHhcCCCCEEEecHHHHHH
Confidence 0 0012357899999988864
No 63
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.29 E-value=9e-06 Score=98.06 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=72.6
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.|++||.+++..+++. +..|++-..|-|||+..+.-++.....
T Consensus 36 ~p~~~Q~~ai~~il~G-------~nvvv~apTGSGKTla~~LPiL~~l~~------------------------------ 78 (742)
T TIGR03817 36 RPWQHQARAAELAHAG-------RHVVVATGTASGKSLAYQLPVLSALAD------------------------------ 78 (742)
T ss_pred cCCHHHHHHHHHHHCC-------CCEEEECCCCCcHHHHHHHHHHHHHhh------------------------------
Confidence 5899999999988732 346888999999998765444321100
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhh-hc
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE-LA 431 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~-l~ 431 (743)
.+....|||+|.- |..|=..++.++.. ..+++.+|+|......... ..
T Consensus 79 ----------------------------~~~~~aL~l~PtraLa~q~~~~l~~l~~--~~i~v~~~~Gdt~~~~r~~i~~ 128 (742)
T TIGR03817 79 ----------------------------DPRATALYLAPTKALAADQLRAVRELTL--RGVRPATYDGDTPTEERRWARE 128 (742)
T ss_pred ----------------------------CCCcEEEEEcChHHHHHHHHHHHHHhcc--CCeEEEEEeCCCCHHHHHHHhc
Confidence 1123589999974 66777778887752 2588999999764332222 24
Q ss_pred cCCEEEeehhhhhc
Q 004604 432 KYDVVLTTYSIVTN 445 (743)
Q Consensus 432 ~~DVVITTY~~l~~ 445 (743)
..+|||||-+.+..
T Consensus 129 ~~~IivtTPd~L~~ 142 (742)
T TIGR03817 129 HARYVLTNPDMLHR 142 (742)
T ss_pred CCCEEEEChHHHHH
Confidence 57999999988853
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=98.28 E-value=7.7e-06 Score=102.48 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=68.0
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
+..++++|+.++..++.. +..++.-..|.|||.-.+.++... .
T Consensus 78 G~~pt~iQ~~~i~~il~g-------~dv~i~ApTGsGKT~f~l~~~~~l--~---------------------------- 120 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLG-------ESFAIIAPTGVGKTTFGLVMSLYL--A---------------------------- 120 (1176)
T ss_pred CCCCcHHHHHHHHHHHCC-------CcEEEEcCCCCCHHHHHHHHHHHH--H----------------------------
Confidence 457899999988777632 335777799999996333222111 0
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCC--CCCh-
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSR--TKDP- 427 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r--~~~~- 427 (743)
.....+|||||.. |+.||.+.+.++.... .+.+.+..|... ....
T Consensus 121 ------------------------------~~g~~alIL~PTreLa~Qi~~~l~~l~~~~-~~~~~~~~g~~~~~~~ek~ 169 (1176)
T PRK09401 121 ------------------------------KKGKKSYIIFPTRLLVEQVVEKLEKFGEKV-GCGVKILYYHSSLKKKEKE 169 (1176)
T ss_pred ------------------------------hcCCeEEEEeccHHHHHHHHHHHHHHhhhc-CceEEEEEccCCcchhHHH
Confidence 0124589999984 7899999999886532 445444443322 1111
Q ss_pred ---hhh--ccCCEEEeehhhhhc
Q 004604 428 ---VEL--AKYDVVLTTYSIVTN 445 (743)
Q Consensus 428 ---~~l--~~~DVVITTY~~l~~ 445 (743)
..+ ..+||+|+|.+.+..
T Consensus 170 ~~~~~l~~~~~~IlV~Tp~rL~~ 192 (1176)
T PRK09401 170 EFLERLKEGDFDILVTTSQFLSK 192 (1176)
T ss_pred HHHHHHhcCCCCEEEECHHHHHH
Confidence 112 468999999998864
No 65
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.26 E-value=1.6e-05 Score=97.72 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=71.2
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.|+|+|.+++..+++ +...|++-..|-|||+.++..++....... .
T Consensus 32 ~~tpiQ~~Ai~~il~-------g~nvli~APTGSGKTlaa~Lpil~~l~~~~---------------------~------ 77 (876)
T PRK13767 32 TFTPPQRYAIPLIHE-------GKNVLISSPTGSGKTLAAFLAIIDELFRLG---------------------R------ 77 (876)
T ss_pred CCCHHHHHHHHHHHc-------CCCEEEECCCCCcHHHHHHHHHHHHHHhhc---------------------c------
Confidence 489999999988763 234799999999999987655432111000 0
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHH-------HhC---CCCC-CcEEEEEeCC
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELE-------DKV---PDKA-ALSVLIYHGG 421 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~-------k~~---~~~~-~l~V~iy~G~ 421 (743)
.........+|+|+|. .|..|+.+.+. +++ .... .+++.+.+|.
T Consensus 78 ------------------------~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gd 133 (876)
T PRK13767 78 ------------------------EGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGD 133 (876)
T ss_pred ------------------------ccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCC
Confidence 0000112348999997 56677765433 332 1111 5788999998
Q ss_pred CCCCChhh--hccCCEEEeehhhhhc
Q 004604 422 SRTKDPVE--LAKYDVVLTTYSIVTN 445 (743)
Q Consensus 422 ~r~~~~~~--l~~~DVVITTY~~l~~ 445 (743)
........ ....+|+|||.+.+..
T Consensus 134 t~~~~r~~~l~~~p~IlVtTPE~L~~ 159 (876)
T PRK13767 134 TSSYEKQKMLKKPPHILITTPESLAI 159 (876)
T ss_pred CCHHHHHHHHhCCCCEEEecHHHHHH
Confidence 65433322 2357999999998864
No 66
>COG4889 Predicted helicase [General function prediction only]
Probab=98.07 E-value=5.5e-06 Score=96.39 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=32.6
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHH
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~ 318 (743)
.-+|||||.+|+.-..+.... +-+|- |--..|.|||.+++-+.-
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~--n~RGk-LIMAcGTGKTfTsLkisE 202 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSD--NDRGK-LIMACGTGKTFTSLKISE 202 (1518)
T ss_pred CCCCChhHHHHHHHHHhhccc--ccCCc-EEEecCCCccchHHHHHH
Confidence 457999999999887765432 44554 444589999999988764
No 67
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.03 E-value=2.9e-05 Score=89.78 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=40.8
Q ss_pred CcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh------hhccCCEEEeehhhhh
Q 004604 385 AGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYSIVT 444 (743)
Q Consensus 385 ~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~------~l~~~DVVITTY~~l~ 444 (743)
+.+|||+|. +|..|+.+.|++.++ .++.++|+.....+.. ..++.+|||+|.+.+.
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf 88 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF 88 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc
Confidence 358999997 588999999998874 4578888865332211 1246799999988764
No 68
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.99 E-value=3.9e-05 Score=93.93 Aligned_cols=166 Identities=15% Similarity=0.140 Sum_probs=100.0
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
..++|+|.+++..++. ++-.|+.-..|-|||+....-++..
T Consensus 459 ~sFRp~Q~eaI~aiL~-------GrDVLVimPTGSGKSLcYQLPAL~~-------------------------------- 499 (1195)
T PLN03137 459 HSFRPNQREIINATMS-------GYDVFVLMPTGGGKSLTYQLPALIC-------------------------------- 499 (1195)
T ss_pred CCCCHHHHHHHHHHHc-------CCCEEEEcCCCccHHHHHHHHHHHc--------------------------------
Confidence 3689999999988773 2346888999999998754333210
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh----
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP---- 427 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~---- 427 (743)
.+.+|||+|. +|+.+....+... .+++..+.+.......
T Consensus 500 -------------------------------~GiTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~il 543 (1195)
T PLN03137 500 -------------------------------PGITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEIL 543 (1195)
T ss_pred -------------------------------CCcEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHH
Confidence 1348999997 5766555555442 4555555554322111
Q ss_pred hh----hccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccC
Q 004604 428 VE----LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (743)
Q Consensus 428 ~~----l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (743)
.. ...++++++|-+.+...- +.....
T Consensus 544 r~l~s~~g~~~ILyvTPERL~~~d------------------------~ll~~L-------------------------- 573 (1195)
T PLN03137 544 QELSSEYSKYKLLYVTPEKVAKSD------------------------SLLRHL-------------------------- 573 (1195)
T ss_pred HHHHhcCCCCCEEEEChHHhhcch------------------------HHHHHH--------------------------
Confidence 11 156899999999875310 000000
Q ss_pred CCCcc-ccCccEEEEcCCcccCChhh---HHHHHH----HhcccCcEEEEecCCCCCCHHHHHHHHHhh
Q 004604 504 CGPLA-KVGWFRVVLDEAQTIKNHRT---QVARAC----CSLRAKRRWCLSGTPIQNSIDDLYSYFRFL 564 (743)
Q Consensus 504 ~~~L~-~i~w~rVIlDEAH~IKN~~S---k~skal----~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL 564 (743)
..+. .....+|||||||.+-.... .-++.+ ..+.....++||||.-.....|+...|.+.
T Consensus 574 -~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~ 641 (1195)
T PLN03137 574 -ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLV 641 (1195)
T ss_pred -HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCC
Confidence 0010 12256799999999854321 112222 233455689999999888777877766543
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.98 E-value=5e-05 Score=83.78 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=37.8
Q ss_pred CcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC--------------------ChhhhccCCEEEeehhhh
Q 004604 385 AGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK--------------------DPVELAKYDVVLTTYSIV 443 (743)
Q Consensus 385 ~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~--------------------~~~~l~~~DVVITTY~~l 443 (743)
.++++|+|. +++.|+.+.+..++.. ++..+||..... ........+++++|.+.+
T Consensus 30 ~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l 105 (358)
T TIGR01587 30 DRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQV 105 (358)
T ss_pred CeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHH
Confidence 468999996 6889999999998752 355556543210 001123467999999887
Q ss_pred hc
Q 004604 444 TN 445 (743)
Q Consensus 444 ~~ 445 (743)
..
T Consensus 106 ~~ 107 (358)
T TIGR01587 106 LK 107 (358)
T ss_pred HH
Confidence 64
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.96 E-value=3.8e-05 Score=91.37 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=68.0
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
..|+|||.+.+..+.- ..|+|.--..|-|||++++..+... .+
T Consensus 67 lglrpydVQlig~l~l-------~~G~Iaem~TGeGKTLta~Lpa~l~-aL----------------------------- 109 (762)
T TIGR03714 67 LGMFPYDVQVLGAIVL-------HQGNIAEMKTGEGKTLTATMPLYLN-AL----------------------------- 109 (762)
T ss_pred cCCCccHHHHHHHHHh-------cCCceeEecCCcchHHHHHHHHHHH-hh-----------------------------
Confidence 3467777777765542 2568999999999999987665322 11
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCC-CC-CC---
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGS-RT-KD--- 426 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~-r~-~~--- 426 (743)
..+.++||+|.. |..||..++..++..- .++|.+..+.. .. ..
T Consensus 110 ------------------------------~g~~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~~~~~~s~~~~~~~~~ 158 (762)
T TIGR03714 110 ------------------------------TGKGAMLVTTNDYLAKRDAEEMGPVYEWL-GLTVSLGVVDDPDEEYDANE 158 (762)
T ss_pred ------------------------------cCCceEEeCCCHHHHHHHHHHHHHHHhhc-CCcEEEEECCCCccccCHHH
Confidence 113489999986 6788888876654322 56666544431 11 11
Q ss_pred hhhhccCCEEEeehhhhhc
Q 004604 427 PVELAKYDVVLTTYSIVTN 445 (743)
Q Consensus 427 ~~~l~~~DVVITTY~~l~~ 445 (743)
.......||+++|.+.|..
T Consensus 159 rr~~y~~dIvygTp~~Lgf 177 (762)
T TIGR03714 159 KRKIYNSDIVYTTNSALGF 177 (762)
T ss_pred HHHhCCCCEEEECchhhhh
Confidence 2233468999999998854
No 71
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.95 E-value=9e-05 Score=90.33 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=104.7
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...--|-|..|+.-..+--.++ ...-=+||-|+|-|||=.|+=.+..- .
T Consensus 592 PyeET~DQl~AI~eVk~DM~~~-kpMDRLiCGDVGFGKTEVAmRAAFkA--V---------------------------- 640 (1139)
T COG1197 592 PYEETPDQLKAIEEVKRDMESG-KPMDRLICGDVGFGKTEVAMRAAFKA--V---------------------------- 640 (1139)
T ss_pred CCcCCHHHHHHHHHHHHHhccC-CcchheeecCcCCcHHHHHHHHHHHH--h----------------------------
Confidence 4456778999998776533322 22344899999999999887444210 0
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhH-HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh--
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL-RQWARELEDKVPDKAALSVLIYHGGSRTKDPV-- 428 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll-~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~-- 428 (743)
...+-+-|+||..+| .|=.+.|.+-+.+- .++|-+..--...+...
T Consensus 641 ------------------------------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~i 689 (1139)
T COG1197 641 ------------------------------MDGKQVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEI 689 (1139)
T ss_pred ------------------------------cCCCeEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHH
Confidence 111448999999977 56666666655532 45555444332222211
Q ss_pred ----hhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCC
Q 004604 429 ----ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGC 504 (743)
Q Consensus 429 ----~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~ 504 (743)
.-++.||||-|+..+..++..
T Consensus 690 l~~la~G~vDIvIGTHrLL~kdv~F------------------------------------------------------- 714 (1139)
T COG1197 690 LKGLAEGKVDIVIGTHRLLSKDVKF------------------------------------------------------- 714 (1139)
T ss_pred HHHHhcCCccEEEechHhhCCCcEE-------------------------------------------------------
Confidence 236789999999999865422
Q ss_pred CCccccCccEEEEcCCcccCChhhHHHHHHHhcccC-cEEEEecCCCCCCHH
Q 004604 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK-RRWCLSGTPIQNSID 555 (743)
Q Consensus 505 ~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~-~R~lLTGTPiqN~l~ 555 (743)
-+-.+|||||=|++. -+.-..++.|++. +.+-||||||.-+|.
T Consensus 715 -----kdLGLlIIDEEqRFG---Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 715 -----KDLGLLIIDEEQRFG---VKHKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred -----ecCCeEEEechhhcC---ccHHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 113479999999994 3334667888665 889999999999875
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.84 E-value=5.2e-05 Score=95.23 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=69.5
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...+.++|..++..++.. +..++.-..|.|||.-++.++....
T Consensus 76 g~~p~~iQ~~~i~~il~G-------~d~vi~ApTGsGKT~f~l~~~~~l~------------------------------ 118 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRG-------DSFAIIAPTGVGKTTFGLAMSLFLA------------------------------ 118 (1171)
T ss_pred CCCCcHHHHHHHHHHhCC-------CeEEEECCCCCCHHHHHHHHHHHHH------------------------------
Confidence 346899999998877732 2357778999999974443332210
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcE---EEEEeCCCCCCCh
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALS---VLIYHGGSRTKDP 427 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~---V~iy~G~~r~~~~ 427 (743)
.....+|||+|.. |+.|+.+++.+++... .++ ++.|||.......
T Consensus 119 ------------------------------~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~ 167 (1171)
T TIGR01054 119 ------------------------------KKGKRCYIILPTTLLVIQVAEKISSLAEKA-GVGTVNIGAYHSRLPTKEK 167 (1171)
T ss_pred ------------------------------hcCCeEEEEeCHHHHHHHHHHHHHHHHHhc-CCceeeeeeecCCCCHHHH
Confidence 0013589999985 7799999999887531 222 3457886533221
Q ss_pred ----hhh--ccCCEEEeehhhhhc
Q 004604 428 ----VEL--AKYDVVLTTYSIVTN 445 (743)
Q Consensus 428 ----~~l--~~~DVVITTY~~l~~ 445 (743)
..+ ..+||||+|...+..
T Consensus 168 ~~~~~~l~~~~~dIlV~Tp~rL~~ 191 (1171)
T TIGR01054 168 KEFMERIENGDFDILITTTMFLSK 191 (1171)
T ss_pred HHHHHHHhcCCCCEEEECHHHHHH
Confidence 112 358999999988764
No 73
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.75 E-value=0.00065 Score=81.51 Aligned_cols=177 Identities=20% Similarity=0.187 Sum_probs=109.7
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
..|.|+|++++.-..+ +...++.--.|-|||..|+.-+....... + .+
T Consensus 21 ~~~t~~Q~~a~~~i~~-------G~nvLiiAPTGsGKTeAAfLpil~~l~~~---------------------~-~~--- 68 (814)
T COG1201 21 TSLTPPQRYAIPEIHS-------GENVLIIAPTGSGKTEAAFLPVINELLSL---------------------G-KG--- 68 (814)
T ss_pred CCCCHHHHHHHHHHhC-------CCceEEEcCCCCChHHHHHHHHHHHHHhc---------------------c-CC---
Confidence 3689999999988873 34579999999999999886664322110 0 00
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHH-HHHHHHHHhCCCCCCcEEEEEeCCCCCCChh--h
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLR-QWARELEDKVPDKAALSVLIYHGGSRTKDPV--E 429 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~-qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~--~ 429 (743)
.....=.+|=|.|.-.|. --.+-++.|... ..+.|-+-||.-...... .
T Consensus 69 ---------------------------~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~-~G~~v~vRhGDT~~~er~r~~ 120 (814)
T COG1201 69 ---------------------------KLEDGIYALYISPLKALNNDIRRRLEEPLRE-LGIEVAVRHGDTPQSEKQKML 120 (814)
T ss_pred ---------------------------CCCCceEEEEeCcHHHHHHHHHHHHHHHHHH-cCCccceecCCCChHHhhhcc
Confidence 000112379999986553 344444444322 267788888876443332 2
Q ss_pred hccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccc
Q 004604 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (743)
Q Consensus 430 l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (743)
..-.||+|||-+++.--+.. .+.+ ..|..
T Consensus 121 ~~PPdILiTTPEsL~lll~~-------------------------~~~r--------------------------~~l~~ 149 (814)
T COG1201 121 KNPPHILITTPESLAILLNS-------------------------PKFR--------------------------ELLRD 149 (814)
T ss_pred CCCCcEEEeChhHHHHHhcC-------------------------HHHH--------------------------HHhcC
Confidence 35689999999998754311 0000 11444
Q ss_pred cCccEEEEcCCcccCChh--hHHHHHHHhc---c-cCcEEEEecCCCCCCHHHHHHHHHhhCCC
Q 004604 510 VGWFRVVLDEAQTIKNHR--TQVARACCSL---R-AKRRWCLSGTPIQNSIDDLYSYFRFLKYD 567 (743)
Q Consensus 510 i~w~rVIlDEAH~IKN~~--Sk~skal~~L---~-a~~R~lLTGTPiqN~l~EL~sLl~FL~p~ 567 (743)
+. .|||||.|.+.+.+ ++.+-.+.+| . .-.|+.||+|= .+..-+.+||...
T Consensus 150 vr--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV-----~~~~~varfL~g~ 206 (814)
T COG1201 150 VR--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV-----GPPEEVAKFLVGF 206 (814)
T ss_pred Cc--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc-----CCHHHHHHHhcCC
Confidence 44 49999999997643 5666666665 2 35799999993 3445556677653
No 74
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.73 E-value=0.00031 Score=67.30 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=23.8
Q ss_pred ccCccEEEEcCCcccCChhhHHHHHHH-hc-cc--CcEEEEecCCCC
Q 004604 509 KVGWFRVVLDEAQTIKNHRTQVARACC-SL-RA--KRRWCLSGTPIQ 551 (743)
Q Consensus 509 ~i~w~rVIlDEAH~IKN~~Sk~skal~-~L-~a--~~R~lLTGTPiq 551 (743)
...|++||+||+|.. ++.|...+... .+ .. ...+.+|+||--
T Consensus 93 ~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 93 LKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp TTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred ccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 457999999999985 44444333322 22 22 267999999953
No 75
>PRK14701 reverse gyrase; Provisional
Probab=97.62 E-value=0.00023 Score=91.73 Aligned_cols=106 Identities=15% Similarity=0.238 Sum_probs=69.9
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
..+++.|..++..+++. +-.++.-..|.|||+..+.+... . .
T Consensus 78 ~~pt~iQ~~~i~~il~G-------~d~li~APTGsGKTl~~~~~al~-~-~----------------------------- 119 (1638)
T PRK14701 78 FEFWSIQKTWAKRILRG-------KSFSIVAPTGMGKSTFGAFIALF-L-A----------------------------- 119 (1638)
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEEEcCCCCHHHHHHHHHHH-H-H-----------------------------
Confidence 35899999999888853 22477788999999832211111 0 0
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCC-CCcEEEEEeCCCCCCChh--
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDK-AALSVLIYHGGSRTKDPV-- 428 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~-~~l~V~iy~G~~r~~~~~-- 428 (743)
.....+|||+|. .|+.|..+.+..++... ...++..++|+.......
T Consensus 120 -----------------------------~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~ 170 (1638)
T PRK14701 120 -----------------------------LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEF 170 (1638)
T ss_pred -----------------------------hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHH
Confidence 011348999998 57799999999875421 146778888876433221
Q ss_pred --hh--ccCCEEEeehhhhhc
Q 004604 429 --EL--AKYDVVLTTYSIVTN 445 (743)
Q Consensus 429 --~l--~~~DVVITTY~~l~~ 445 (743)
.+ +++||+|+|-+.+..
T Consensus 171 ~~~l~~g~~dILV~TPgrL~~ 191 (1638)
T PRK14701 171 LERIENGDFDILVTTAQFLAR 191 (1638)
T ss_pred HHHHhcCCCCEEEECCchhHH
Confidence 12 368999999886653
No 76
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.51 E-value=0.00066 Score=77.41 Aligned_cols=108 Identities=23% Similarity=0.254 Sum_probs=73.9
Q ss_pred CcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCC-CCCCChhhhc-cCCEEEeehhhhhccCCCCCCCchHHhhhh
Q 004604 385 AGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGG-SRTKDPVELA-KYDVVLTTYSIVTNEVPKQPSVDEEEADEK 461 (743)
Q Consensus 385 ~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~-~r~~~~~~l~-~~DVVITTY~~l~~e~~~~~~~~~~~~~~~ 461 (743)
..+||++|.- |..|-+.++.++.... .++..+.+|+ ........+. ..||||.|-+.+.-.+..
T Consensus 166 P~vLVL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~------------ 232 (519)
T KOG0331|consen 166 PIVLVLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE------------ 232 (519)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc------------
Confidence 3499999986 7789999999887643 4545555554 4444444554 489999999888743211
Q ss_pred cccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccC--ChhhHHHHHHHhc-c
Q 004604 462 NGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIK--NHRTQVARACCSL-R 538 (743)
Q Consensus 462 ~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IK--N~~Sk~skal~~L-~ 538 (743)
+.+.--+..++|||||.++- ....+.-+.+..+ .
T Consensus 233 -------------------------------------------g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~ 269 (519)
T KOG0331|consen 233 -------------------------------------------GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR 269 (519)
T ss_pred -------------------------------------------CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCC
Confidence 11222235679999999984 4678888889999 5
Q ss_pred cCc-EEEEecC
Q 004604 539 AKR-RWCLSGT 548 (743)
Q Consensus 539 a~~-R~lLTGT 548 (743)
..+ .++-|+|
T Consensus 270 ~~rQtlm~saT 280 (519)
T KOG0331|consen 270 PDRQTLMFSAT 280 (519)
T ss_pred CcccEEEEeee
Confidence 544 5677777
No 77
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.50 E-value=0.001 Score=79.32 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=34.4
Q ss_pred CcEEEEeChh-hHHHHHHHHHHhCCC--CCCcEEEEEeCCCCCCC-hhhhccCCEEEeehh
Q 004604 385 AGTLVVCPAS-VLRQWARELEDKVPD--KAALSVLIYHGGSRTKD-PVELAKYDVVLTTYS 441 (743)
Q Consensus 385 ~~tLIV~P~S-ll~qW~~Ei~k~~~~--~~~l~V~iy~G~~r~~~-~~~l~~~DVVITTY~ 441 (743)
+.++|++|.- ++.|...++.+.+.- .....+.+.+|+..... .......++||.|..
T Consensus 223 ~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~ 283 (675)
T PHA02653 223 RPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHK 283 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCc
Confidence 4699999974 668888888765431 11355666666654210 111225688888743
No 78
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.45 E-value=0.0018 Score=78.84 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=30.7
Q ss_pred EEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCC
Q 004604 514 RVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQ 551 (743)
Q Consensus 514 rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiq 551 (743)
+||+||+|++.. ..+..+++..|...+.+.-|||--.
T Consensus 204 ivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecCC
Confidence 599999999965 2457788999999999999999644
No 79
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.40 E-value=0.00092 Score=82.84 Aligned_cols=145 Identities=22% Similarity=0.177 Sum_probs=86.1
Q ss_pred cccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcccccccccCCCCCCCCCCccccc
Q 004604 295 HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTS 374 (743)
Q Consensus 295 ~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~~s 374 (743)
...||++-|-.|-|||++++-+.......
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~--------------------------------------------------- 300 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLEL--------------------------------------------------- 300 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhc---------------------------------------------------
Confidence 35789999999999999998877544321
Q ss_pred cccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhc--cCCEEEeehhhhhccCCCCC
Q 004604 375 TRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA--KYDVVLTTYSIVTNEVPKQP 451 (743)
Q Consensus 375 ~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~--~~DVVITTY~~l~~e~~~~~ 451 (743)
.....+++|+=-- |-.|-.++|..+-.. ..... .-.+...-...+. .-.|||||-..|.......
T Consensus 301 -------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~---~~~~~-~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~- 368 (962)
T COG0610 301 -------PKNPKVLFVVDRKDLDDQTSDEFQSFGKV---AFNDP-KAESTSELKELLEDGKGKIIVTTIQKFNKAVKED- 368 (962)
T ss_pred -------cCCCeEEEEechHHHHHHHHHHHHHHHHh---hhhcc-cccCHHHHHHHHhcCCCcEEEEEecccchhhhcc-
Confidence 1113367777654 669999999986431 11111 1111111111222 3479999998887543210
Q ss_pred CCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCChhhHHH
Q 004604 452 SVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVA 531 (743)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~s 531 (743)
.........-+||+||||+--... ..
T Consensus 369 ----------------------------------------------------~~~~~~~~~ivvI~DEaHRSQ~G~--~~ 394 (962)
T COG0610 369 ----------------------------------------------------ELELLKRKNVVVIIDEAHRSQYGE--LA 394 (962)
T ss_pred ----------------------------------------------------cccccCCCcEEEEEechhhccccH--HH
Confidence 001123345689999999864432 22
Q ss_pred HHH-HhcccCcEEEEecCCCCCCHHH
Q 004604 532 RAC-CSLRAKRRWCLSGTPIQNSIDD 556 (743)
Q Consensus 532 kal-~~L~a~~R~lLTGTPiqN~l~E 556 (743)
+.+ ..+..-.-+..||||+.-.-..
T Consensus 395 ~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 395 KLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred HHHHHHhccceEEEeeCCcccccccc
Confidence 222 3344467789999999765443
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.36 E-value=0.00083 Score=80.81 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=69.2
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
-++||+.+.+..+.-. .|-|..-..|-|||+.++..+.... +
T Consensus 76 g~~p~~vQl~~~~~l~-------~G~Iaem~TGeGKTL~a~lp~~l~a-l------------------------------ 117 (790)
T PRK09200 76 GMRPYDVQLIGALVLH-------EGNIAEMQTGEGKTLTATMPLYLNA-L------------------------------ 117 (790)
T ss_pred CCCCchHHHHhHHHHc-------CCceeeecCCCcchHHHHHHHHHHH-H------------------------------
Confidence 4666666666666522 3568889999999997765543221 1
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCC-CCChh
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSR-TKDPV 428 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r-~~~~~ 428 (743)
....++||+|...| ..|...+-+++ .++|.+..|... .....
T Consensus 118 -----------------------------~G~~v~VvTpt~~LA~qd~e~~~~l~~~l----Gl~v~~i~g~~~~~~~r~ 164 (790)
T PRK09200 118 -----------------------------EGKGVHLITVNDYLAKRDAEEMGQVYEFL----GLTVGLNFSDIDDASEKK 164 (790)
T ss_pred -----------------------------cCCCeEEEeCCHHHHHHHHHHHHHHHhhc----CCeEEEEeCCCCcHHHHH
Confidence 12458999999765 34777777776 588888888765 44445
Q ss_pred hhccCCEEEeehhhhhc
Q 004604 429 ELAKYDVVLTTYSIVTN 445 (743)
Q Consensus 429 ~l~~~DVVITTY~~l~~ 445 (743)
..-..||++.|...+.-
T Consensus 165 ~~y~~dIvygT~~~l~f 181 (790)
T PRK09200 165 AIYEADIIYTTNSELGF 181 (790)
T ss_pred HhcCCCEEEECCccccc
Confidence 55678999999777643
No 81
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.36 E-value=0.002 Score=77.84 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=38.2
Q ss_pred cEEEEeChh-hHHHHHHHHHHhCCC----------------------CCCcEEEEEeCCCCC-CChhhh-ccCCEEEeeh
Q 004604 386 GTLVVCPAS-VLRQWARELEDKVPD----------------------KAALSVLIYHGGSRT-KDPVEL-AKYDVVLTTY 440 (743)
Q Consensus 386 ~tLIV~P~S-ll~qW~~Ei~k~~~~----------------------~~~l~V~iy~G~~r~-~~~~~l-~~~DVVITTY 440 (743)
+.+.+||.- |+.|=.++++++... ...+++..++|+... .....+ ...+|||.|.
T Consensus 64 rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~ 143 (844)
T TIGR02621 64 RLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV 143 (844)
T ss_pred eEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH
Confidence 344467974 678888888776531 124777777877543 223333 3568999998
Q ss_pred hhhhc
Q 004604 441 SIVTN 445 (743)
Q Consensus 441 ~~l~~ 445 (743)
+.+.+
T Consensus 144 D~i~s 148 (844)
T TIGR02621 144 DMIGS 148 (844)
T ss_pred HHHcC
Confidence 87765
No 82
>PRK09694 helicase Cas3; Provisional
Probab=97.30 E-value=0.0027 Score=77.58 Aligned_cols=40 Identities=23% Similarity=0.060 Sum_probs=27.6
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHH
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~ 319 (743)
..++|+|..+..-.. . ..=.||-..||.|||-.++.++..
T Consensus 285 ~~p~p~Q~~~~~~~~---~----pgl~ileApTGsGKTEAAL~~A~~ 324 (878)
T PRK09694 285 YQPRQLQTLVDALPL---Q----PGLTIIEAPTGSGKTEAALAYAWR 324 (878)
T ss_pred CCChHHHHHHHhhcc---C----CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 468899986632211 1 112488899999999999887753
No 83
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.21 E-value=0.0011 Score=78.83 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=38.8
Q ss_pred cEEEEeChhhH-HH---HHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhcc
Q 004604 386 GTLVVCPASVL-RQ---WARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446 (743)
Q Consensus 386 ~tLIV~P~Sll-~q---W~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e 446 (743)
.++||+|...| .| |...+-+++ .++|.+..|..........-..||++.|...|.-+
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~L----GLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfD 159 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFL----GLSVGLILSGMSPEERREAYACDITYGTNNELGFD 159 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC----CCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhH
Confidence 48999999755 33 666665554 58888888765443333344579999998877543
No 84
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.17 E-value=0.0023 Score=76.91 Aligned_cols=135 Identities=24% Similarity=0.279 Sum_probs=79.5
Q ss_pred cEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhccc
Q 004604 386 GTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGE 464 (743)
Q Consensus 386 ~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~ 464 (743)
++.-|+|. +|..--.+-+.+.+.+- .++|.-+.|....... +..+.+|+|||-+.+----.
T Consensus 166 KiVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~t-ei~~tqiiVTTPEKwDvvTR---------------- 227 (1230)
T KOG0952|consen 166 KIVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKT-EIADTQIIVTTPEKWDVVTR---------------- 227 (1230)
T ss_pred eEEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHH-HHHhcCEEEecccceeeeee----------------
Confidence 48889996 55544444444444322 6899999998755443 38899999999764321000
Q ss_pred ccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCChh-----hHHHHHHHhc--
Q 004604 465 TYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHR-----TQVARACCSL-- 537 (743)
Q Consensus 465 ~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~-----Sk~skal~~L-- 537 (743)
+... +...+. ...+|||||.|.+...+ +..++.++..
T Consensus 228 ----------------------------k~~~------d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 228 ----------------------------KSVG------DSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred ----------------------------eecc------chhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 0000 001111 23579999999998765 3444444333
Q ss_pred --ccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCcHHHHHHHh
Q 004604 538 --RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTI 579 (743)
Q Consensus 538 --~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~~~~F~~~f 579 (743)
+.-+.+.|||| +.| ..| +.+||+..++...-.|...|
T Consensus 272 sqs~IRivgLSAT-lPN-~eD---vA~fL~vn~~~glfsFd~~y 310 (1230)
T KOG0952|consen 272 SQSMIRIVGLSAT-LPN-YED---VARFLRVNPYAGLFSFDQRY 310 (1230)
T ss_pred hhhheEEEEeecc-CCC-HHH---HHHHhcCCCccceeeecccc
Confidence 33477899999 333 333 56788887665544444433
No 85
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=97.08 E-value=0.0074 Score=71.35 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=69.3
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...++|-|..|+--|+ .|-|.--..|-|||+.+...+.....
T Consensus 101 g~~p~~VQ~~~~~~ll---------~G~Iae~~TGeGKTla~~lp~~~~al----------------------------- 142 (656)
T PRK12898 101 GQRHFDVQLMGGLALL---------SGRLAEMQTGEGKTLTATLPAGTAAL----------------------------- 142 (656)
T ss_pred CCCCChHHHHHHHHHh---------CCCeeeeeCCCCcHHHHHHHHHHHhh-----------------------------
Confidence 4456667777776665 24477788999999988766643210
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhH-H---HHHHHHHHhCCCCCCcEEEEEeCCCCCCCh
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL-R---QWARELEDKVPDKAALSVLIYHGGSRTKDP 427 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll-~---qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~ 427 (743)
....++||+|+--| . +|...+-+++ .++|.+..|+......
T Consensus 143 -------------------------------~G~~v~VvTptreLA~qdae~~~~l~~~l----Glsv~~i~gg~~~~~r 187 (656)
T PRK12898 143 -------------------------------AGLPVHVITVNDYLAERDAELMRPLYEAL----GLTVGCVVEDQSPDER 187 (656)
T ss_pred -------------------------------cCCeEEEEcCcHHHHHHHHHHHHHHHhhc----CCEEEEEeCCCCHHHH
Confidence 11458999999755 3 4666666655 5888887776543333
Q ss_pred hhhccCCEEEeehhhhhccCC
Q 004604 428 VELAKYDVVLTTYSIVTNEVP 448 (743)
Q Consensus 428 ~~l~~~DVVITTY~~l~~e~~ 448 (743)
...-..|||+.|-..|.-++-
T Consensus 188 ~~~y~~dIvygT~~e~~FDyL 208 (656)
T PRK12898 188 RAAYGADITYCTNKELVFDYL 208 (656)
T ss_pred HHHcCCCEEEECCCchhhhhc
Confidence 344578999999877765543
No 86
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.06 E-value=0.0039 Score=79.56 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=38.9
Q ss_pred CcEEEEeChh-hHHHHHHHHHH----h------C-CCCCCcEEEEEeCCCCCCChhhh--ccCCEEEeehhhhhc
Q 004604 385 AGTLVVCPAS-VLRQWARELED----K------V-PDKAALSVLIYHGGSRTKDPVEL--AKYDVVLTTYSIVTN 445 (743)
Q Consensus 385 ~~tLIV~P~S-ll~qW~~Ei~k----~------~-~~~~~l~V~iy~G~~r~~~~~~l--~~~DVVITTY~~l~~ 445 (743)
..+|+|+|.- |..|=.++++. . + .....++|.+++|.....+...+ ...||+|||.+.+..
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYL 112 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHH
Confidence 3589999975 44443444332 1 1 11125889999998755544333 367999999998864
No 87
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.91 E-value=0.0037 Score=69.96 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=79.1
Q ss_pred cccchhhHHHHHHHHHhhhccccccc--eEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCC
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLG--GILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~G--GILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (743)
..++|-|..-+-|++.-.+.+...++ -.++-..|-|||+.-.-=|...-..
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~--------------------------- 210 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS--------------------------- 210 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHcc---------------------------
Confidence 46999999999999875553322223 3567789999998533222211100
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh-h
Q 004604 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-V 428 (743)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~-~ 428 (743)
+..+.=+.+||+|.- |..|-.++|.+|++. ..|.|....|.+.-++. .
T Consensus 211 -----------------------------R~v~~LRavVivPtr~L~~QV~~~f~~~~~~-tgL~V~~~sgq~sl~~E~~ 260 (620)
T KOG0350|consen 211 -----------------------------RPVKRLRAVVIVPTRELALQVYDTFKRLNSG-TGLAVCSLSGQNSLEDEAR 260 (620)
T ss_pred -----------------------------CCccceEEEEEeeHHHHHHHHHHHHHHhccC-CceEEEecccccchHHHHH
Confidence 001123479999986 668999999999875 48899999998754432 1
Q ss_pred hh------ccCCEEEeehhhhhccC
Q 004604 429 EL------AKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 429 ~l------~~~DVVITTY~~l~~e~ 447 (743)
.+ ...||+|+|-+.+...+
T Consensus 261 qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 261 QLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHhcCCCccccceEEcCchHHHHhc
Confidence 22 35699999999887544
No 88
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=96.86 E-value=0.0015 Score=76.11 Aligned_cols=121 Identities=18% Similarity=0.347 Sum_probs=71.6
Q ss_pred EEEEcCCcccCC-------hhhHHHHHHHhcc----cCcEEEEecCCCCCCHHHHHHHHHhhCCCC------CCcHHHHH
Q 004604 514 RVVLDEAQTIKN-------HRTQVARACCSLR----AKRRWCLSGTPIQNSIDDLYSYFRFLKYDP------YAVYKSFY 576 (743)
Q Consensus 514 rVIlDEAH~IKN-------~~Sk~skal~~L~----a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~------~~~~~~F~ 576 (743)
+||+||+|+.|| ..|++-+++..|+ .-+.+-.|+|=... --+|.-..+.+. |.+|.+|.
T Consensus 408 vIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsE----PrNMaYM~RLGlWGegtaf~eF~eFi 483 (1300)
T KOG1513|consen 408 VIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASE----PRNMAYMVRLGLWGEGTAFPEFEEFI 483 (1300)
T ss_pred eEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCC----cchhhhhhhhccccCCCcCccHHHHH
Confidence 799999999999 4578888887773 33566677775432 222333344443 45666676
Q ss_pred HHhcccccCCchhHHH--HHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHH---HHHHHHH
Q 004604 577 STIKIPISRNSLHGYK--KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES---DSLKKFK 651 (743)
Q Consensus 577 ~~f~~pi~~~~~~~~~--~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~---~~~~~~~ 651 (743)
..++ +....+++ .+...++...|-|. +.+-.....+..|+|+++=+++|+.-.+ ++...|.
T Consensus 484 ~AvE----kRGvGAMEIVAMDMK~rGmYiARQ----------LSFkgVsFrieEv~ls~eF~k~Yn~a~~LW~ea~~kFq 549 (1300)
T KOG1513|consen 484 HAVE----KRGVGAMEIVAMDMKLRGMYIARQ----------LSFKGVSFRIEEVPLSKEFRKVYNRAAELWAEALNKFQ 549 (1300)
T ss_pred HHHH----hcCCceeeeeehhhhhhhhhhhhh----------ccccCceEEEEecccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6553 22222221 11122222222221 3566677889999999999999986544 4444444
Q ss_pred H
Q 004604 652 A 652 (743)
Q Consensus 652 ~ 652 (743)
.
T Consensus 550 ~ 550 (1300)
T KOG1513|consen 550 Q 550 (1300)
T ss_pred H
Confidence 3
No 89
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.86 E-value=0.0057 Score=74.10 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=66.9
Q ss_pred cchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcccc
Q 004604 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLD 354 (743)
Q Consensus 275 L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 354 (743)
|+|||.+.+.-+.. +.|-|.--..|-|||+..+.-++... .
T Consensus 93 ~tp~qvQ~I~~i~l-------~~gvIAeaqTGeGKTLAf~LP~l~~a-L------------------------------- 133 (970)
T PRK12899 93 MVPYDVQILGAIAM-------HKGFITEMQTGEGKTLTAVMPLYLNA-L------------------------------- 133 (970)
T ss_pred CChHHHHHhhhhhc-------CCCeEEEeCCCCChHHHHHHHHHHHH-h-------------------------------
Confidence 78999998877762 34556667899999998876554311 0
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhh
Q 004604 355 KVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (743)
Q Consensus 355 ~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l 430 (743)
..++++||+|.--| .+|...+.+++ .+++.+..|+.........
T Consensus 134 ----------------------------~g~~v~IVTpTrELA~Qdae~m~~L~k~l----GLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 134 ----------------------------TGKPVHLVTVNDYLAQRDCEWVGSVLRWL----GLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred ----------------------------hcCCeEEEeCCHHHHHHHHHHHHHHHhhc----CCeEEEEeCCCCHHHHHHH
Confidence 01237899997643 45777777765 4778777665433322223
Q ss_pred ccCCEEEeehhhhhc
Q 004604 431 AKYDVVLTTYSIVTN 445 (743)
Q Consensus 431 ~~~DVVITTY~~l~~ 445 (743)
-..|||+.|-+.|.-
T Consensus 182 y~~DIVygTPgRLgf 196 (970)
T PRK12899 182 YQCDVVYGTASEFGF 196 (970)
T ss_pred cCCCEEEECCChhHH
Confidence 358999999888743
No 90
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.80 E-value=0.029 Score=56.96 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=27.2
Q ss_pred ccchhhHHHHHHHHHhhhccccccc-eEEEccCCCchHHHHHHHHHHH
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLG-GILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~G-GILADdMGLGKTiqaIAli~~~ 320 (743)
+|-+.|+.|+..++... + .++.--.|.|||-...+++...
T Consensus 1 ~ln~~Q~~Ai~~~~~~~-------~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 1 KLNESQREAIQSALSSN-------GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp ---HHHHHHHHHHCTSS-------E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC-------CCEEEECCCCCChHHHHHHHHHHh
Confidence 36789999998777432 3 5777788999997777776543
No 91
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.0066 Score=73.12 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=73.2
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...++..|+.-...++... .=+|+|= .|+|||--.+...++...
T Consensus 80 G~~~ws~QR~WakR~~rg~------SFaiiAP-TGvGKTTfg~~~sl~~a~----------------------------- 123 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVRGK------SFAIIAP-TGVGKTTFGLLMSLYLAK----------------------------- 123 (1187)
T ss_pred CCCchHHHHHHHHHHHcCC------ceEEEcC-CCCchhHHHHHHHHHHHh-----------------------------
Confidence 4578889987666666322 1257774 899999765554443221
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEE-EeCCCCCCChh-
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLI-YHGGSRTKDPV- 428 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~i-y~G~~r~~~~~- 428 (743)
..++.+||+|.. |+.|=.+-|+++......+++.+ ||+.-..+...
T Consensus 124 -------------------------------kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee 172 (1187)
T COG1110 124 -------------------------------KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEE 172 (1187)
T ss_pred -------------------------------cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHH
Confidence 125689999986 66999999998875443354444 99875444322
Q ss_pred -----hhccCCEEEeehhhhhccC
Q 004604 429 -----ELAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 429 -----~l~~~DVVITTY~~l~~e~ 447 (743)
.-++|||+|||-..+...+
T Consensus 173 ~le~i~~gdfdIlitTs~FL~k~~ 196 (1187)
T COG1110 173 ALERIESGDFDILITTSQFLSKRF 196 (1187)
T ss_pred HHHHHhcCCccEEEEeHHHHHhhH
Confidence 2357999999999887643
No 92
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.63 E-value=0.021 Score=70.55 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=29.5
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHH
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~ 318 (743)
....+|+|.+.+..+.+.... ..-+++--..|.|||+..+.-+.
T Consensus 243 ~~~~r~~Q~~~~~~i~~~~~~---~~~~~~eA~TG~GKT~ayLlp~~ 286 (850)
T TIGR01407 243 GLEYRPEQLKLAELVLDQLTH---SEKSLIEAPTGTGKTLGYLLPAL 286 (850)
T ss_pred CCccCHHHHHHHHHHHHHhcc---CCcEEEECCCCCchhHHHHHHHH
Confidence 346899999877766554432 12244555899999998776654
No 93
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.58 E-value=0.019 Score=67.98 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=71.3
Q ss_pred cccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCC
Q 004604 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (743)
Q Consensus 271 ~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (743)
+....++-|+.|..-|+ .|-|.=-..|=|||+.+...+.... +
T Consensus 75 lg~r~ydvQlig~l~Ll---------~G~VaEM~TGEGKTLvA~l~a~l~A-L--------------------------- 117 (764)
T PRK12326 75 LGLRPFDVQLLGALRLL---------AGDVIEMATGEGKTLAGAIAAAGYA-L--------------------------- 117 (764)
T ss_pred cCCCcchHHHHHHHHHh---------CCCcccccCCCCHHHHHHHHHHHHH-H---------------------------
Confidence 34556677888886665 2445545669999999876664321 1
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCC
Q 004604 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKD 426 (743)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~ 426 (743)
..+.+-||+|+..| .+|...+-+++ .++|-+..+......
T Consensus 118 --------------------------------~G~~VhvvT~NdyLA~RDae~m~~ly~~L----GLsvg~i~~~~~~~e 161 (764)
T PRK12326 118 --------------------------------QGRRVHVITVNDYLARRDAEWMGPLYEAL----GLTVGWITEESTPEE 161 (764)
T ss_pred --------------------------------cCCCeEEEcCCHHHHHHHHHHHHHHHHhc----CCEEEEECCCCCHHH
Confidence 12458999999877 45888888877 588888877655444
Q ss_pred hhhhccCCEEEeehhhhhccC
Q 004604 427 PVELAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 427 ~~~l~~~DVVITTY~~l~~e~ 447 (743)
....-.+||+-+|-..|.-++
T Consensus 162 rr~aY~~DItYgTn~e~gFDy 182 (764)
T PRK12326 162 RRAAYACDVTYASVNEIGFDV 182 (764)
T ss_pred HHHHHcCCCEEcCCccccccc
Confidence 555567899888877666544
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.034 Score=59.97 Aligned_cols=145 Identities=19% Similarity=0.149 Sum_probs=91.7
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
..+|-++|+.+-.-+++-..... --|+---.|-|||=++...|.....
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~---~~lv~AV~GaGKTEMif~~i~~al~----------------------------- 142 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKE---DTLVWAVTGAGKTEMIFQGIEQALN----------------------------- 142 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcC---cEEEEEecCCCchhhhHHHHHHHHh-----------------------------
Confidence 45799999998776665444322 2366667899999877776653221
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhh
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l 430 (743)
....+.|..|.- |+---..-+.+-+. ...+.+.||.+...-
T Consensus 143 -------------------------------~G~~vciASPRvDVclEl~~Rlk~aF~---~~~I~~Lyg~S~~~f---- 184 (441)
T COG4098 143 -------------------------------QGGRVCIASPRVDVCLELYPRLKQAFS---NCDIDLLYGDSDSYF---- 184 (441)
T ss_pred -------------------------------cCCeEEEecCcccchHHHHHHHHHhhc---cCCeeeEecCCchhc----
Confidence 124578888863 66666666776665 456777787764322
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...=||-||+..++- .-
T Consensus 185 r~plvVaTtHQLlrF---------------------------------------------------------------k~ 201 (441)
T COG4098 185 RAPLVVATTHQLLRF---------------------------------------------------------------KQ 201 (441)
T ss_pred cccEEEEehHHHHHH---------------------------------------------------------------Hh
Confidence 223366677776652 12
Q ss_pred CccEEEEcCCccc--CChhhHHHHHHHh-c-ccCcEEEEecCCC
Q 004604 511 GWFRVVLDEAQTI--KNHRTQVARACCS-L-RAKRRWCLSGTPI 550 (743)
Q Consensus 511 ~w~rVIlDEAH~I--KN~~Sk~skal~~-L-~a~~R~lLTGTPi 550 (743)
.||.+|+||...+ .+..+ ...|+.. . ....++.||+||-
T Consensus 202 aFD~liIDEVDAFP~~~d~~-L~~Av~~ark~~g~~IylTATp~ 244 (441)
T COG4098 202 AFDLLIIDEVDAFPFSDDQS-LQYAVKKARKKEGATIYLTATPT 244 (441)
T ss_pred hccEEEEeccccccccCCHH-HHHHHHHhhcccCceEEEecCCh
Confidence 3889999999987 23223 3334433 3 3346899999996
No 95
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=96.52 E-value=0.017 Score=62.50 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=68.3
Q ss_pred eEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccc---------HHHHHHHHHHHHHHcCCcccccccCC-Ccc-
Q 004604 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN---------YANILLMLLRLRQACDHPLLVKEYDF-DSV- 691 (743)
Q Consensus 623 ~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~~g~~~~~---------~~~iL~lL~rLRqiC~HP~Lv~~~~~-~~~- 691 (743)
.++.+.++|+..|+++|+.+.......+..+......... ...+-.++.+|+.||+||+|+.+... ...
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 3678999999999999999999988888887754443322 24566678899999999999866442 222
Q ss_pred ccchHHHHhcCCH--HHHHHHHHHhhhccccccccceeeEeecccchhhccc
Q 004604 692 GKISGEMAKRLPR--DMLIDLLSRLETSSAICCVCSVSFYFKRNTSILFLSG 741 (743)
Q Consensus 692 ~~~~~e~~~~l~~--~~l~~Ll~~l~~~~~~c~~C~~~l~f~q~~~~L~~~~ 741 (743)
.....+.+..... ..+.+|+..+-.. ..-..-...++.+++...|++++
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~-~~~~~~~~ilIv~~~~k~ldllE 134 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDR-DRREYPLHILIVSRSGKELDLLE 134 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH------TTSSEEEEEEE-STHHHHHHH
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhh-hcccCCceEEEEecCccHHHHHH
Confidence 1122222222221 2466677666100 00112257788999999998875
No 96
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.031 Score=65.07 Aligned_cols=115 Identities=23% Similarity=0.308 Sum_probs=74.9
Q ss_pred EEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-Chhhhc-cCCEEEeehhhhhccCCCCCCCchHHhhhhcc
Q 004604 387 TLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELA-KYDVVLTTYSIVTNEVPKQPSVDEEEADEKNG 463 (743)
Q Consensus 387 tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~-~~~~l~-~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~ 463 (743)
.||++|.- |..|-.+++.++......+++..++|+.... ....+. ..||||.|-..+...+..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-------------- 167 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-------------- 167 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc--------------
Confidence 89999986 6789999998776532157777777765322 223333 399999999888643211
Q ss_pred cccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCCh--hhHHHHHHHhccc-C
Q 004604 464 ETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNH--RTQVARACCSLRA-K 540 (743)
Q Consensus 464 ~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~--~Sk~skal~~L~a-~ 540 (743)
..|.--...++|+|||.++-+. ...+...+..+.. .
T Consensus 168 -----------------------------------------~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~ 206 (513)
T COG0513 168 -----------------------------------------GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDR 206 (513)
T ss_pred -----------------------------------------CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCccc
Confidence 0123334557999999999664 3455555555544 5
Q ss_pred cEEEEecCCCCCCHHHH
Q 004604 541 RRWCLSGTPIQNSIDDL 557 (743)
Q Consensus 541 ~R~lLTGTPiqN~l~EL 557 (743)
..++.|+|--. .+.+|
T Consensus 207 qtllfSAT~~~-~i~~l 222 (513)
T COG0513 207 QTLLFSATMPD-DIREL 222 (513)
T ss_pred EEEEEecCCCH-HHHHH
Confidence 67888999655 44444
No 97
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.47 E-value=0.0083 Score=72.66 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=39.0
Q ss_pred cEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhc
Q 004604 386 GTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445 (743)
Q Consensus 386 ~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~ 445 (743)
.++||+|.--| .+|...+.+++ .++|.+..|+.........-..||++.|-+.|.-
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~l----GLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgf 184 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFL----GLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGF 184 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccc----CceEEEEeCCCCHHHHHHHhCCCEEEECChhhhH
Confidence 48999998644 34777776665 5888888776543333344468999999888743
No 98
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.27 E-value=0.049 Score=64.59 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=26.6
Q ss_pred CcEEEEeCh-hhHHHHHHHHHHhCCC--CCCcEEEEEeCCCC
Q 004604 385 AGTLVVCPA-SVLRQWARELEDKVPD--KAALSVLIYHGGSR 423 (743)
Q Consensus 385 ~~tLIV~P~-Sll~qW~~Ei~k~~~~--~~~l~V~iy~G~~r 423 (743)
+++||.+|. .|..|+.+++...... ...+++.+..|...
T Consensus 47 ~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~n 88 (636)
T TIGR03117 47 QKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQE 88 (636)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCcc
Confidence 468999997 4778999888765311 12577777777653
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.026 Score=69.39 Aligned_cols=166 Identities=19% Similarity=0.157 Sum_probs=107.6
Q ss_pred ccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCC
Q 004604 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNG 349 (743)
Q Consensus 270 ~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 349 (743)
-..++|-++|++++.-+.+. .+-++|--.|-|||+.+-.+|..-..
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~-------esVlV~ApTssGKTvVaeyAi~~al~--------------------------- 160 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERG-------ESVLVCAPTSSGKTVVAEYAIALALR--------------------------- 160 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCC-------CcEEEEccCCCCcchHHHHHHHHHHH---------------------------
Confidence 35678999999999877643 34689999999999999888754211
Q ss_pred CcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh
Q 004604 350 NAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428 (743)
Q Consensus 350 ~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~ 428 (743)
...++.-..|. .|..|=.++|...+.+- .--|-++.|....
T Consensus 161 ---------------------------------~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~I---- 202 (1041)
T COG4581 161 ---------------------------------DGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSI---- 202 (1041)
T ss_pred ---------------------------------cCCceEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceee----
Confidence 01236777784 67788888888777531 1123556665432
Q ss_pred hhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcc
Q 004604 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLA 508 (743)
Q Consensus 429 ~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~ 508 (743)
-.++.|+++|-++|++-+.+. ...+.
T Consensus 203 -N~~A~clvMTTEILRnMlyrg-----------------------------------------------------~~~~~ 228 (1041)
T COG4581 203 -NPDAPCLVMTTEILRNMLYRG-----------------------------------------------------SESLR 228 (1041)
T ss_pred -CCCCceEEeeHHHHHHHhccC-----------------------------------------------------ccccc
Confidence 245678888889998754320 01122
Q ss_pred ccCccEEEEcCCcccCChh-hHHHHHHHhc--ccCcEEEEecCCCCCCHHHHHHHHHhhC
Q 004604 509 KVGWFRVVLDEAQTIKNHR-TQVARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLK 565 (743)
Q Consensus 509 ~i~w~rVIlDEAH~IKN~~-Sk~skal~~L--~a~~R~lLTGTPiqN~l~EL~sLl~FL~ 565 (743)
. ...||+||.|+|.... .-.+.-+.-+ ..-+-++||+| + .+..||-.-+.-++
T Consensus 229 ~--i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSAT-v-~N~~EF~~Wi~~~~ 284 (1041)
T COG4581 229 D--IEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSAT-V-PNAEEFAEWIQRVH 284 (1041)
T ss_pred c--cceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCC-C-CCHHHHHHHHHhcc
Confidence 3 3459999999997643 4444444433 33378999999 2 34566665555443
No 100
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.22 E-value=0.047 Score=58.88 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=30.6
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHH
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~ 319 (743)
+.+|.|++-..-+.+.... +.-+|+--..|.|||+..|..++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~---~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDR---GKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred CCCHHHHHHHHHHHHHHHc---CCcEEEECCCCcchhHHHHHHHHH
Confidence 4599999966666554432 233677778999999999877753
No 101
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.22 E-value=0.047 Score=58.88 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=30.6
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHH
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~ 319 (743)
+.+|.|++-..-+.+.... +.-+|+--..|.|||+..|..++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~---~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDR---GKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred CCCHHHHHHHHHHHHHHHc---CCcEEEECCCCcchhHHHHHHHHH
Confidence 4599999966666554432 233677778999999999877753
No 102
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.19 E-value=0.019 Score=69.56 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=42.5
Q ss_pred CcEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhcc
Q 004604 385 AGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446 (743)
Q Consensus 385 ~~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e 446 (743)
+.+-||+|+-.| .+|...+-+++ .++|-+..+..........-.+||++.|...|.-+
T Consensus 124 ~~VhvvT~ndyLA~RD~e~m~~l~~~l----Gl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFD 185 (913)
T PRK13103 124 KGVHVVTVNDYLARRDANWMRPLYEFL----GLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFD 185 (913)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhccc----CCEEEEECCCCCHHHHHHHhcCCEEEEcccccccc
Confidence 458899999876 44777777665 58888887765555555556699999999887544
No 103
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=96.18 E-value=0.041 Score=67.37 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=31.4
Q ss_pred cEEEEeChhhH-HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhcc
Q 004604 386 GTLVVCPASVL-RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446 (743)
Q Consensus 386 ~tLIV~P~Sll-~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e 446 (743)
.+||++|.-++ .|-.+.+.+.........|....+...... ....|+++|.+.+.+.
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~----~~t~I~v~T~G~Llr~ 107 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVG----PNTRLEVVTEGILTRM 107 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccC----CCCcEEEEChhHHHHH
Confidence 58999998754 566666655443322233332222221111 2236889999888653
No 104
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.16 E-value=0.025 Score=61.80 Aligned_cols=164 Identities=23% Similarity=0.196 Sum_probs=102.4
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
.+-+-|.+|+-..++ ++-+|-+-+.|-|||..-+-=|+. +-++
T Consensus 83 ~PT~IQ~~aiP~~L~-------g~dvIglAeTGSGKT~afaLPIl~-~LL~----------------------------- 125 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG-------GRDVIGLAETGSGKTGAFALPILQ-RLLQ----------------------------- 125 (476)
T ss_pred CCchhhhhhcchhhC-------CCcEEEEeccCCCchhhhHHHHHH-HHHc-----------------------------
Confidence 355678888877773 344799999999999864333321 1110
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC--hhhh
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PVEL 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~--~~~l 430 (743)
....-..||++|.- |-.|-...++.. ..+-.+++.+.-|+..... ....
T Consensus 126 ---------------------------~p~~~~~lVLtPtRELA~QI~e~fe~L-g~~iglr~~~lvGG~~m~~q~~~L~ 177 (476)
T KOG0330|consen 126 ---------------------------EPKLFFALVLTPTRELAQQIAEQFEAL-GSGIGLRVAVLVGGMDMMLQANQLS 177 (476)
T ss_pred ---------------------------CCCCceEEEecCcHHHHHHHHHHHHHh-ccccCeEEEEEecCchHHHHHHHhh
Confidence 00112379999986 556777777664 4445788888888764322 2234
Q ss_pred ccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCcccc
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
.+.+|+|.|-+.+...+.. ...|+ |.+
T Consensus 178 kkPhilVaTPGrL~dhl~~-------------------Tkgf~---------------------------------le~- 204 (476)
T KOG0330|consen 178 KKPHILVATPGRLWDHLEN-------------------TKGFS---------------------------------LEQ- 204 (476)
T ss_pred cCCCEEEeCcHHHHHHHHh-------------------ccCcc---------------------------------HHH-
Confidence 5678999999988754321 00111 122
Q ss_pred CccEEEEcCCcccCChh--hHHHHHHHhcccCcE-EEEecCCCCCCHHHH
Q 004604 511 GWFRVVLDEAQTIKNHR--TQVARACCSLRAKRR-WCLSGTPIQNSIDDL 557 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~--Sk~skal~~L~a~~R-~lLTGTPiqN~l~EL 557 (743)
..++|+|||.++-|.+ -...+.++.+..+++ ++.|+|- ..++..|
T Consensus 205 -lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM-t~kv~kL 252 (476)
T KOG0330|consen 205 -LKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATM-TKKVRKL 252 (476)
T ss_pred -hHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeec-chhhHHH
Confidence 2359999999998753 566777777866655 5556663 4444444
No 105
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.13 E-value=0.026 Score=59.93 Aligned_cols=58 Identities=24% Similarity=0.185 Sum_probs=39.8
Q ss_pred CcEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhcc
Q 004604 385 AGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446 (743)
Q Consensus 385 ~~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e 446 (743)
+++=||+.+..| .+|...|-+++ .++|-+..+..........-..||+-+|-..+..+
T Consensus 119 ~~V~vvT~NdyLA~RD~~~~~~~y~~L----Glsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD 180 (266)
T PF07517_consen 119 KGVHVVTSNDYLAKRDAEEMRPFYEFL----GLSVGIITSDMSSEERREAYAADIVYGTNSEFGFD 180 (266)
T ss_dssp S-EEEEESSHHHHHHHHHHHHHHHHHT----T--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHH
T ss_pred CCcEEEeccHHHhhccHHHHHHHHHHh----hhccccCccccCHHHHHHHHhCcccccccchhhHH
Confidence 457888888766 56999999988 47887777765443444555789998888777643
No 106
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.06 E-value=0.018 Score=65.14 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=74.1
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
+.+-|+|+.++.-+. .++|.+-|-..|.|||.-=+-=|........ .+ .
T Consensus 95 ~~ptpvQk~sip~i~-------~Grdl~acAqTGsGKT~aFLiPii~~~~~~~--------------------~~-~--- 143 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIIS-------GGRDLMACAQTGSGKTAAFLIPIISYLLDEG--------------------PE-D--- 143 (482)
T ss_pred cCCCcceeeccceee-------cCCceEEEccCCCcchHHHHHHHHHHHHhcC--------------------cc-c---
Confidence 346788998886554 4577788899999999754432222111000 00 0
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC--Chhh
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVE 429 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~--~~~~ 429 (743)
+...........||++|.. |+.|-.+|.+++.... .++..+.+|..... ....
T Consensus 144 -----------------------~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~ 199 (482)
T KOG0335|consen 144 -----------------------RGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFI 199 (482)
T ss_pred -----------------------CcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhh
Confidence 0000011234589999985 8899999999987643 56666655553221 2333
Q ss_pred hccCCEEEeehhhhhccC
Q 004604 430 LAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 430 l~~~DVVITTY~~l~~e~ 447 (743)
-..+|++++|-..+..-+
T Consensus 200 ~~gcdIlvaTpGrL~d~~ 217 (482)
T KOG0335|consen 200 KRGCDILVATPGRLKDLI 217 (482)
T ss_pred ccCccEEEecCchhhhhh
Confidence 467999999999887643
No 107
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.00 E-value=0.067 Score=65.52 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.1
Q ss_pred ceEEEccCCCchHHHHHHHHH
Q 004604 298 GGILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 298 GGILADdMGLGKTiqaIAli~ 318 (743)
-.|+.-+.|-|||.+..-.++
T Consensus 19 ~vIi~a~TGSGKTT~vpl~lL 39 (819)
T TIGR01970 19 QVVLEAPPGAGKSTAVPLALL 39 (819)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999987775
No 108
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=95.95 E-value=0.02 Score=68.50 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=67.0
Q ss_pred cccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCC
Q 004604 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (743)
Q Consensus 271 ~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (743)
..+.|=.+|++|+.-|.+-+ .-+.|--.--|||+.|=..|+.-..+
T Consensus 294 ~pFelD~FQk~Ai~~lerg~-------SVFVAAHTSAGKTvVAEYAialaq~h--------------------------- 339 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGD-------SVFVAAHTSAGKTVVAEYAIALAQKH--------------------------- 339 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCC-------eEEEEecCCCCcchHHHHHHHHHHhh---------------------------
Confidence 35567889999997776322 25788889999999986666532211
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhh
Q 004604 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429 (743)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~ 429 (743)
..++.--.|-- |-.|=-++|+..+.+. -+..|....
T Consensus 340 ---------------------------------~TR~iYTSPIKALSNQKfRDFk~tF~Dv-----gLlTGDvqi----- 376 (1248)
T KOG0947|consen 340 ---------------------------------MTRTIYTSPIKALSNQKFRDFKETFGDV-----GLLTGDVQI----- 376 (1248)
T ss_pred ---------------------------------ccceEecchhhhhccchHHHHHHhcccc-----ceeecceee-----
Confidence 12245556644 4456778898888752 256665432
Q ss_pred hccCCEEEeehhhhhccC
Q 004604 430 LAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 430 l~~~DVVITTY~~l~~e~ 447 (743)
-.++.++|+|-+++++-+
T Consensus 377 nPeAsCLIMTTEILRsML 394 (1248)
T KOG0947|consen 377 NPEASCLIMTTEILRSML 394 (1248)
T ss_pred CCCcceEeehHHHHHHHH
Confidence 245679999999999865
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=95.95 E-value=0.029 Score=67.94 Aligned_cols=57 Identities=23% Similarity=0.252 Sum_probs=40.0
Q ss_pred cEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhcc
Q 004604 386 GTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446 (743)
Q Consensus 386 ~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e 446 (743)
.+-||+|.-.| .+|...+-+++ .++|.+..|..........-..||++.|...|.-+
T Consensus 124 ~V~IvTpn~yLA~rd~e~~~~l~~~L----Glsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfD 184 (830)
T PRK12904 124 GVHVVTVNDYLAKRDAEWMGPLYEFL----GLSVGVILSGMSPEERREAYAADITYGTNNEFGFD 184 (830)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhhc----CCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhh
Confidence 36699999765 34777777666 58888888765444444444589999999888544
No 110
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.037 Score=64.60 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=105.7
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHH--HHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISII--ALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaI--Ali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
.+++-|.+.+.-+++. +-.|.---.|-||++.-- |++
T Consensus 17 ~FR~gQ~evI~~~l~g-------~d~lvvmPTGgGKSlCyQiPAll---------------------------------- 55 (590)
T COG0514 17 SFRPGQQEIIDALLSG-------KDTLVVMPTGGGKSLCYQIPALL---------------------------------- 55 (590)
T ss_pred ccCCCHHHHHHHHHcC-------CcEEEEccCCCCcchHhhhHHHh----------------------------------
Confidence 4889999999999854 235777789999997432 222
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh--
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV-- 428 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~-- 428 (743)
..+.||||.|. ||+..=.+.+... .+.+...+..-......
T Consensus 56 -------------------------------~~G~TLVVSPLiSLM~DQV~~l~~~-----Gi~A~~lnS~l~~~e~~~v 99 (590)
T COG0514 56 -------------------------------LEGLTLVVSPLISLMKDQVDQLEAA-----GIRAAYLNSTLSREERQQV 99 (590)
T ss_pred -------------------------------cCCCEEEECchHHHHHHHHHHHHHc-----CceeehhhcccCHHHHHHH
Confidence 12569999997 7777777777764 35555555543222221
Q ss_pred ----hhccCCEEEeehhhhhccCCCCCCCchHHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCC
Q 004604 429 ----ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGC 504 (743)
Q Consensus 429 ----~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~ 504 (743)
..+..+++..+-+.+.+.. |.
T Consensus 100 ~~~l~~g~~klLyisPErl~~~~------------------------f~------------------------------- 124 (590)
T COG0514 100 LNQLKSGQLKLLYISPERLMSPR------------------------FL------------------------------- 124 (590)
T ss_pred HHHHhcCceeEEEECchhhcChH------------------------HH-------------------------------
Confidence 1245788888888876531 00
Q ss_pred CCccccCccEEEEcCCcccCCh-------hhHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCC
Q 004604 505 GPLAKVGWFRVVLDEAQTIKNH-------RTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (743)
Q Consensus 505 ~~L~~i~w~rVIlDEAH~IKN~-------~Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p 566 (743)
..|......+++|||||.|-.+ -.........+...-+++||||=-.--..|+-..|..-.+
T Consensus 125 ~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~ 193 (590)
T COG0514 125 ELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDA 193 (590)
T ss_pred HHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCc
Confidence 0144566778999999999654 2333333344444578999999877778888887765544
No 111
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=95.82 E-value=0.074 Score=64.59 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=39.5
Q ss_pred CcEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhcc
Q 004604 385 AGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446 (743)
Q Consensus 385 ~~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e 446 (743)
+++.||+|+--| ..|...+-+++ .++|-+..+..........=..||++.|-+.|.-+
T Consensus 124 ~~VhIvT~ndyLA~RD~e~m~~l~~~l----Glsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfD 185 (908)
T PRK13107 124 KGVHVITVNDYLARRDAENNRPLFEFL----GLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFD 185 (908)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccch
Confidence 448999998654 56999999987 57887766644332222222579999998777543
No 112
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=95.61 E-value=0.072 Score=60.94 Aligned_cols=120 Identities=22% Similarity=0.245 Sum_probs=78.7
Q ss_pred CCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChh------hhccCCEEEeehhhhhccCCCCCCCchH
Q 004604 384 AAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYSIVTNEVPKQPSVDEE 456 (743)
Q Consensus 384 ~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~------~l~~~DVVITTY~~l~~e~~~~~~~~~~ 456 (743)
.+++|.+||.- |..|=.++|.+.+.+- .+++-+--|..|.++.. .-.++|||+-||+-+-.-+..
T Consensus 261 g~KmlfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt------- 332 (830)
T COG1202 261 GKKMLFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT------- 332 (830)
T ss_pred CCeEEEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-------
Confidence 36699999985 5577788888877543 67888888888766543 346899999999877532210
Q ss_pred HhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCCh-h-hHHHHHH
Q 004604 457 EADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNH-R-TQVARAC 534 (743)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~-~-Sk~skal 534 (743)
+ ..+ -+...||+||.|.+... . ...--.+
T Consensus 333 ----------------------------------g-------------~~l--gdiGtVVIDEiHtL~deERG~RLdGLI 363 (830)
T COG1202 333 ----------------------------------G-------------KDL--GDIGTVVIDEIHTLEDEERGPRLDGLI 363 (830)
T ss_pred ----------------------------------C-------------Ccc--cccceEEeeeeeeccchhcccchhhHH
Confidence 0 001 12457999999999762 2 2222223
Q ss_pred Hhc----ccCcEEEEecCCCCCCHHHHHHHHH
Q 004604 535 CSL----RAKRRWCLSGTPIQNSIDDLYSYFR 562 (743)
Q Consensus 535 ~~L----~a~~R~lLTGTPiqN~l~EL~sLl~ 562 (743)
.+| ..-..+.||+| -.|+.||...|.
T Consensus 364 ~RLr~l~~~AQ~i~LSAT--VgNp~elA~~l~ 393 (830)
T COG1202 364 GRLRYLFPGAQFIYLSAT--VGNPEELAKKLG 393 (830)
T ss_pred HHHHHhCCCCeEEEEEee--cCChHHHHHHhC
Confidence 333 33456889999 466788877665
No 113
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.54 E-value=0.056 Score=55.27 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=22.7
Q ss_pred cCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCHH
Q 004604 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSID 555 (743)
Q Consensus 510 i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l~ 555 (743)
+...+|||||||++... ..-..+.++....+++++|=|.|....
T Consensus 118 ~~~~~iIvDEaQN~t~~--~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTPE--ELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-SEEEEE-SGGG--HH--HHHHHHTTB-TT-EEEEEE--------
T ss_pred ccceEEEEecccCCCHH--HHHHHHcccCCCcEEEEecCceeecCC
Confidence 34478999999999643 444456677888999999999887644
No 114
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.54 E-value=0.058 Score=60.85 Aligned_cols=120 Identities=20% Similarity=0.264 Sum_probs=76.8
Q ss_pred CCCCcEEEEeChhh----HHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC--hhhhccCCEEEeehhhhhccCCCCCCCch
Q 004604 382 RPAAGTLVVCPASV----LRQWARELEDKVPDKAALSVLIYHGGSRTKD--PVELAKYDVVLTTYSIVTNEVPKQPSVDE 455 (743)
Q Consensus 382 ~~~~~tLIV~P~Sl----l~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~--~~~l~~~DVVITTY~~l~~e~~~~~~~~~ 455 (743)
.++-++||+||.-= +.+-..+|.+|+ .+.|...-|+-..+. ....+..||||.|-+.|...+...+
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qlaqFt----~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~---- 321 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLAQFT----DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP---- 321 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHHhhc----cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC----
Confidence 34567999999853 356777788877 577887777764442 2334678999999998876543211
Q ss_pred HHhhhhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCC--hhhHHHHH
Q 004604 456 EEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKN--HRTQVARA 533 (743)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN--~~Sk~ska 533 (743)
.|.--...++|+|||.++-. ...+....
T Consensus 322 --------------------------------------------------sf~ldsiEVLvlDEADRMLeegFademnEi 351 (691)
T KOG0338|consen 322 --------------------------------------------------SFNLDSIEVLVLDEADRMLEEGFADEMNEI 351 (691)
T ss_pred --------------------------------------------------CccccceeEEEechHHHHHHHHHHHHHHHH
Confidence 12222345799999999853 23444444
Q ss_pred HHhc-ccCcEEEEecCCCCCCHHHHHHH
Q 004604 534 CCSL-RAKRRWCLSGTPIQNSIDDLYSY 560 (743)
Q Consensus 534 l~~L-~a~~R~lLTGTPiqN~l~EL~sL 560 (743)
+... +.+..++.|+| +...+.||.++
T Consensus 352 i~lcpk~RQTmLFSAT-MteeVkdL~sl 378 (691)
T KOG0338|consen 352 IRLCPKNRQTMLFSAT-MTEEVKDLASL 378 (691)
T ss_pred HHhccccccceeehhh-hHHHHHHHHHh
Confidence 4433 44456888888 44556666654
No 115
>PRK10536 hypothetical protein; Provisional
Probab=95.50 E-value=0.035 Score=58.54 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=32.5
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCCH
Q 004604 513 FRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSI 554 (743)
Q Consensus 513 ~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~l 554 (743)
.+|||||||++.- .+....+.++....+++++|-|-|..+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 5799999999964 455566778888999999999977653
No 116
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.26 E-value=0.072 Score=60.48 Aligned_cols=113 Identities=16% Similarity=0.254 Sum_probs=67.5
Q ss_pred cchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHH-hhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ-RSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 275 L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
+-.-|++++--+++ ++-.++--..|-|||+.-+.=|... ..++. .++
T Consensus 160 pTsVQkq~IP~lL~-------grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~---------------ki~---------- 207 (708)
T KOG0348|consen 160 PTSVQKQAIPVLLE-------GRDALVRAQTGSGKTLAYLLPIVQSLQAMEP---------------KIQ---------- 207 (708)
T ss_pred cchHhhcchhhhhc-------CcceEEEcCCCCcccHHHHHHHHHHHHhcCc---------------ccc----------
Confidence 44578888877774 3457888899999999766544322 11100 000
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCC-CCCChhhh-
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGS-RTKDPVEL- 430 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~-r~~~~~~l- 430 (743)
...++ =.|||||.- |+.|-.+-+.+.+.+..-+--.++-|+. +..+...+
T Consensus 208 -------------------------Rs~G~--~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLR 260 (708)
T KOG0348|consen 208 -------------------------RSDGP--YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLR 260 (708)
T ss_pred -------------------------ccCCc--eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHh
Confidence 00011 269999985 7888888888877643111122233444 44344444
Q ss_pred ccCCEEEeehhhhhcc
Q 004604 431 AKYDVVLTTYSIVTNE 446 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e 446 (743)
....|+|-|-+.+...
T Consensus 261 KGiNILIgTPGRLvDH 276 (708)
T KOG0348|consen 261 KGINILIGTPGRLVDH 276 (708)
T ss_pred cCceEEEcCchHHHHH
Confidence 4568999998887654
No 117
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=95.12 E-value=0.074 Score=60.57 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=40.0
Q ss_pred cEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-ChhhhccCCEEEeehhhhhccC
Q 004604 386 GTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 386 ~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~-~~~~l~~~DVVITTY~~l~~e~ 447 (743)
+.|||.|.- |..|--.-+.+ ++....++.-..-|+...+ ....+....|+|+|-+.+-...
T Consensus 143 GalIISPTRELA~QtFevL~k-vgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHm 205 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNK-VGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHM 205 (758)
T ss_pred eeEEecchHHHHHHHHHHHHH-HhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHh
Confidence 379999986 55665555543 3333356665555555433 4556788999999999987654
No 118
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=94.98 E-value=0.099 Score=60.71 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=60.8
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccc
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (743)
+|-.-|..||.-.+++-- .||---.|.|||++.-+++..+..
T Consensus 410 kLN~SQ~~AV~~VL~rpl-------sLIQGPPGTGKTvtsa~IVyhl~~------------------------------- 451 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-------SLIQGPPGTGKTVTSATIVYHLAR------------------------------- 451 (935)
T ss_pred hhchHHHHHHHHHHcCCc-------eeeecCCCCCceehhHHHHHHHHH-------------------------------
Confidence 477789999999997643 488889999999988877754332
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhh-HHHHHHHHHHhCCCCCCcEEEEEeCCCCC
Q 004604 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASV-LRQWARELEDKVPDKAALSVLIYHGGSRT 424 (743)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sl-l~qW~~Ei~k~~~~~~~l~V~iy~G~~r~ 424 (743)
.-.+++||++|..+ +.|-..-|.+- .|+|+-....+|.
T Consensus 452 ----------------------------~~~~~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 452 ----------------------------QHAGPVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSRE 490 (935)
T ss_pred ----------------------------hcCCceEEEcccchhHHHHHHHHHhc-----CceEeeeehhhhh
Confidence 12467999999875 78988888763 5888877766553
No 119
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=94.89 E-value=0.11 Score=62.07 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=29.3
Q ss_pred EEEEcCCcccCChhhHHHHHHHhcccCcEEEEecC
Q 004604 514 RVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGT 548 (743)
Q Consensus 514 rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGT 548 (743)
.||+||-|++... .+.+.++..|.....+=..||
T Consensus 208 IvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 208 IVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGAT 241 (985)
T ss_pred EEEecChhhcccc-hHHHHHHHhhCceEEEEeccc
Confidence 5999999999875 799999999988877777777
No 120
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=94.85 E-value=0.11 Score=62.67 Aligned_cols=103 Identities=18% Similarity=0.131 Sum_probs=70.9
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
+...++-|+.|.--|. .|-|.=-..|=|||+.+...+....
T Consensus 78 g~~~~dvQlig~l~l~---------~G~iaEm~TGEGKTLvA~l~a~l~a------------------------------ 118 (796)
T PRK12906 78 GLRPFDVQIIGGIVLH---------EGNIAEMKTGEGKTLTATLPVYLNA------------------------------ 118 (796)
T ss_pred CCCCchhHHHHHHHHh---------cCCcccccCCCCCcHHHHHHHHHHH------------------------------
Confidence 4456677888875442 3556667889999998765554321
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDP 427 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~ 427 (743)
...+.+-||+|+..| ..|...+-+++ .++|-+..|.......
T Consensus 119 ------------------------------l~G~~v~vvT~neyLA~Rd~e~~~~~~~~L----Gl~vg~i~~~~~~~~r 164 (796)
T PRK12906 119 ------------------------------LTGKGVHVVTVNEYLSSRDATEMGELYRWL----GLTVGLNLNSMSPDEK 164 (796)
T ss_pred ------------------------------HcCCCeEEEeccHHHHHhhHHHHHHHHHhc----CCeEEEeCCCCCHHHH
Confidence 112458899999877 45888887776 4888888776555555
Q ss_pred hhhccCCEEEeehhhhhccC
Q 004604 428 VELAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 428 ~~l~~~DVVITTY~~l~~e~ 447 (743)
...-.+||+-+|-..|.-++
T Consensus 165 ~~~y~~dI~Y~t~~e~gfDy 184 (796)
T PRK12906 165 RAAYNCDITYSTNSELGFDY 184 (796)
T ss_pred HHHhcCCCeecCCccccccc
Confidence 56667899888877766544
No 121
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=94.84 E-value=0.17 Score=61.66 Aligned_cols=46 Identities=30% Similarity=0.271 Sum_probs=36.1
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHH
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~ 320 (743)
.-..+++|..++.+.......+. =.+|-...|-|||..++++....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~---~~vl~aPTG~GKT~asl~~a~~~ 238 (733)
T COG1203 193 EHEGYELQEKALELILRLEKRSL---LVVLEAPTGYGKTEASLILALAL 238 (733)
T ss_pred CchhhHHHHHHHHHHHhcccccc---cEEEEeCCCCChHHHHHHHHHHH
Confidence 33468999999999887765441 36899999999999998887653
No 122
>KOG4284 consensus DEAD box protein [Transcription]
Probab=94.07 E-value=0.083 Score=61.10 Aligned_cols=116 Identities=21% Similarity=0.291 Sum_probs=82.6
Q ss_pred EEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCC-CCChhhhccCCEEEeehhhhhccCCCCCCCchHHhhhhccc
Q 004604 387 TLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSR-TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGE 464 (743)
Q Consensus 387 tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r-~~~~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~ 464 (743)
.+||+|.- +--|-.+-|.+.++....++.-+|-|+.. ..+...+.+..|||-|-+.+...+..
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--------------- 160 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--------------- 160 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh---------------
Confidence 69999986 55788888888777555788888887664 45777888889999999888764311
Q ss_pred ccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCC---hhhHHHHHHHhc-ccC
Q 004604 465 TYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKN---HRTQVARACCSL-RAK 540 (743)
Q Consensus 465 ~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN---~~Sk~skal~~L-~a~ 540 (743)
+.|..-..+++|||||..+-. ..-.....+..| +.+
T Consensus 161 ----------------------------------------~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r 200 (980)
T KOG4284|consen 161 ----------------------------------------GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR 200 (980)
T ss_pred ----------------------------------------cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh
Confidence 123344567899999999854 334555666666 556
Q ss_pred cEEEEecCCCCCCHHHHH
Q 004604 541 RRWCLSGTPIQNSIDDLY 558 (743)
Q Consensus 541 ~R~lLTGTPiqN~l~EL~ 558 (743)
..++.|+|=-+| |+++.
T Consensus 201 Qv~a~SATYp~n-Ldn~L 217 (980)
T KOG4284|consen 201 QVAAFSATYPRN-LDNLL 217 (980)
T ss_pred eeeEEeccCchh-HHHHH
Confidence 778899996555 44443
No 123
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=93.85 E-value=0.4 Score=52.29 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=39.0
Q ss_pred ccccCccEEEEcCCcccCChh---hHHHHHH----HhcccCcEEEEecCCCCCCHHHHHHHHH
Q 004604 507 LAKVGWFRVVLDEAQTIKNHR---TQVARAC----CSLRAKRRWCLSGTPIQNSIDDLYSYFR 562 (743)
Q Consensus 507 L~~i~w~rVIlDEAH~IKN~~---Sk~skal----~~L~a~~R~lLTGTPiqN~l~EL~sLl~ 562 (743)
+....|.+|-+||.|...-+. -.-++++ +++.....+.||+|-..|-++|.-.+|.
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 344557789999999874321 1223343 3446667899999999999998887774
No 124
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.50 E-value=0.67 Score=57.14 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=26.0
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHH
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli 317 (743)
...|+-|.+-...+.+......+ .++--..|.|||+.-+.-+
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~~~---~~~eA~tGtGKT~ayllp~ 285 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDGPA---SFIEAQTGIGKTYGYLLPL 285 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCCCc---EEEECCCCCcHHHHHHHHH
Confidence 46788898855555543332211 3444588999998766543
No 125
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.46 E-value=0.3 Score=53.87 Aligned_cols=119 Identities=19% Similarity=0.300 Sum_probs=79.5
Q ss_pred CCCcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhh-ccCCEEEeehhhhhccCCCCCCCchHHhhh
Q 004604 383 PAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL-AKYDVVLTTYSIVTNEVPKQPSVDEEEADE 460 (743)
Q Consensus 383 ~~~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l-~~~DVVITTY~~l~~e~~~~~~~~~~~~~~ 460 (743)
..-.+||..|.. |..|-+-|..+.--.+ ...|++|.|.+|......+ ..++++|.|-..|......
T Consensus 293 ~~p~~lvl~ptreLalqie~e~~kysyng-~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~----------- 360 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEVKKYSYNG-LKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD----------- 360 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHHhHhhhcC-cceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-----------
Confidence 344589999976 5567777777654332 5678888888887766655 4689999998877532100
Q ss_pred hcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCC--hhhHHHHHHHhcc
Q 004604 461 KNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKN--HRTQVARACCSLR 538 (743)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN--~~Sk~skal~~L~ 538 (743)
..+.--..-++|||||.++-. ..-+.-+.+..++
T Consensus 361 --------------------------------------------n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR 396 (629)
T KOG0336|consen 361 --------------------------------------------NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR 396 (629)
T ss_pred --------------------------------------------CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC
Confidence 011122346799999999853 5678888888888
Q ss_pred cCcEEEEecCCCCCCHHHH
Q 004604 539 AKRRWCLSGTPIQNSIDDL 557 (743)
Q Consensus 539 a~~R~lLTGTPiqN~l~EL 557 (743)
.++-.+||..-....+.-|
T Consensus 397 PDRqtvmTSATWP~~VrrL 415 (629)
T KOG0336|consen 397 PDRQTVMTSATWPEGVRRL 415 (629)
T ss_pred CcceeeeecccCchHHHHH
Confidence 8887777655444444433
No 126
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=93.38 E-value=0.38 Score=58.52 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=41.8
Q ss_pred CcEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhccC
Q 004604 385 AGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 385 ~~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e~ 447 (743)
+++-||.++--| ..|...+-+|+ .|+|-+..+..........=.+||+.+|-..|.-++
T Consensus 127 kgVhVVTvNdYLA~RDae~m~~vy~~L----GLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDY 189 (939)
T PRK12902 127 KGVHVVTVNDYLARRDAEWMGQVHRFL----GLSVGLIQQDMSPEERKKNYACDITYATNSELGFDY 189 (939)
T ss_pred CCeEEEeCCHHHHHhHHHHHHHHHHHh----CCeEEEECCCCChHHHHHhcCCCeEEecCCcccccc
Confidence 558888888655 56999999998 477877655444444445557899888877775443
No 127
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=93.34 E-value=0.21 Score=63.39 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=24.0
Q ss_pred CccEEEEcCCc-ccCChhhHHHHHHHhc----ccCcEEEEecCC
Q 004604 511 GWFRVVLDEAQ-TIKNHRTQVARACCSL----RAKRRWCLSGTP 549 (743)
Q Consensus 511 ~w~rVIlDEAH-~IKN~~Sk~skal~~L----~a~~R~lLTGTP 549 (743)
.++.||||||| +.-|..-... .++.+ .....+++|+|.
T Consensus 186 ~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpdlKvILmSATi 228 (1294)
T PRK11131 186 QYDTIIIDEAHERSLNIDFILG-YLKELLPRRPDLKVIITSATI 228 (1294)
T ss_pred cCcEEEecCccccccccchHHH-HHHHhhhcCCCceEEEeeCCC
Confidence 46789999999 4555432221 23333 123678999997
No 128
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.06 E-value=0.37 Score=57.74 Aligned_cols=57 Identities=28% Similarity=0.267 Sum_probs=41.9
Q ss_pred CcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh------hhhccCCEEEeehhhhh
Q 004604 385 AGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP------VELAKYDVVLTTYSIVT 444 (743)
Q Consensus 385 ~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~------~~l~~~DVVITTY~~l~ 444 (743)
+.+||++|. ++..|+..-|+..++ .-.|.+||..-...+. ...++..|||-|.+.+-
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF 252 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF 252 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE
Confidence 458999997 688999999999986 2458889986543322 12356789998887664
No 129
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=92.97 E-value=0.39 Score=58.38 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=40.0
Q ss_pred CcEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhccC
Q 004604 385 AGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 385 ~~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e~ 447 (743)
+++-||+++--| ..|...+-++++ ++|-+..+..........=.+||+-+|-..|.-++
T Consensus 118 ~~VhVvT~NdyLA~RD~e~m~pvy~~LG----Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDy 180 (870)
T CHL00122 118 KGVHIVTVNDYLAKRDQEWMGQIYRFLG----LTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDY 180 (870)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHcC----CceeeeCCCCChHHHHHhcCCCCEecCCccccccc
Confidence 558899998655 569999999984 77776655443333444445788887776665443
No 130
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.13 E-value=1.5 Score=54.97 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=26.0
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHH
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli 317 (743)
...||-|.+-...+.+.-... .-.++=-..|.|||+--+.-+
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~---~~~~iEA~TGtGKTlaYLlpa 297 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDS---EHALIEAGTGTGKSLAYLLPA 297 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCchhHHHHHHH
Confidence 467888988666555443322 113334489999999776444
No 131
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=91.98 E-value=1 Score=51.00 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=38.1
Q ss_pred CcEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCC-CCCChhhh-ccCCEEEeehhhhhcc
Q 004604 385 AGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGS-RTKDPVEL-AKYDVVLTTYSIVTNE 446 (743)
Q Consensus 385 ~~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~-r~~~~~~l-~~~DVVITTY~~l~~e 446 (743)
-.+|||||.- |-.|-..|.++.........|.+.-|+. +......+ ....++|.|-+.|.-.
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDH 219 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDH 219 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhH
Confidence 3589999986 5577777666544322145555555544 44333333 3578899998887643
No 132
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.81 E-value=1.8 Score=52.23 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=31.8
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHH
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~ 320 (743)
.++|+-|+.-...++....... .|+|-+-.|.|||+.-|+-.+..
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q---~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQ---NGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhh---hhhccCCCCCCccHHHHHHHHHH
Confidence 4467777766666665555443 38999999999999887665543
No 133
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.68 E-value=0.85 Score=50.50 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=15.6
Q ss_pred EEccCCCchHHHHHHHHHHH
Q 004604 301 LADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 301 LADdMGLGKTiqaIAli~~~ 320 (743)
+-=..|.|||+.++.++..+
T Consensus 6 I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 6 ITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEecCCcCHHHHHHHHHHHh
Confidence 33458999999999998643
No 134
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=91.62 E-value=0.81 Score=54.82 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=31.0
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHH
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~ 319 (743)
..|-+.|+.+|.+.+.... -.|+--..|.|||-++++++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~------~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKD------LFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred CCCCHHHHHHHHHHhcCCC------eEEEEcCCCCCHHHHHHHHHHH
Confidence 4688899999998874311 1466667999999988888754
No 135
>PHA02533 17 large terminase protein; Provisional
Probab=91.54 E-value=2.6 Score=49.40 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=29.4
Q ss_pred cccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHH
Q 004604 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 271 ~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~ 319 (743)
...+|.|+|+.-+..|..+. . .++.=-=..|||..+.++++.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R---~----~ii~~aRq~GKStl~a~~al~ 97 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNR---F----NACNLSRQLGKTTVVAIFLLH 97 (534)
T ss_pred eecCCcHHHHHHHHHHhcCe---E----EEEEEcCcCChHHHHHHHHHH
Confidence 45679999999988874211 1 255555689999988776654
No 136
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=91.31 E-value=0.79 Score=58.46 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=15.8
Q ss_pred eEEEccCCCchHHHHHHHH
Q 004604 299 GILADDQGLGKTISIIALI 317 (743)
Q Consensus 299 GILADdMGLGKTiqaIAli 317 (743)
.||+-+.|-|||-|.=-++
T Consensus 85 vii~g~TGSGKTTqlPq~l 103 (1283)
T TIGR01967 85 VIIAGETGSGKTTQLPKIC 103 (1283)
T ss_pred EEEeCCCCCCcHHHHHHHH
Confidence 5899999999999875554
No 137
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.29 E-value=0.66 Score=53.14 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCccccccc
Q 004604 278 HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 357 (743)
Q Consensus 278 hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k 357 (743)
-|-+|+.-|...-..+. +--.|---.|.|||.++--+|...
T Consensus 16 DQP~AI~~Lv~gi~~g~--~~QtLLGvTGSGKTfT~AnVI~~~------------------------------------- 56 (663)
T COG0556 16 DQPEAIAELVEGIENGL--KHQTLLGVTGSGKTFTMANVIAKV------------------------------------- 56 (663)
T ss_pred CcHHHHHHHHHHHhcCc--eeeEEeeeccCCchhHHHHHHHHh-------------------------------------
Confidence 68888888876544321 123555568999999998888531
Q ss_pred ccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCC
Q 004604 358 ETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDK 410 (743)
Q Consensus 358 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~ 410 (743)
.+||||++|+ .|..|-..||+.|||..
T Consensus 57 --------------------------~rPtLV~AhNKTLAaQLy~Efk~fFP~N 84 (663)
T COG0556 57 --------------------------QRPTLVLAHNKTLAAQLYSEFKEFFPEN 84 (663)
T ss_pred --------------------------CCCeEEEecchhHHHHHHHHHHHhCcCc
Confidence 2579999997 56699999999999975
No 138
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.85 E-value=2.9 Score=47.37 Aligned_cols=57 Identities=21% Similarity=0.403 Sum_probs=37.1
Q ss_pred cEEEEeChh-hHHH---HHHHHHHhCCCCCCcEEEEEeCCCCCC-Chhhh--ccCCEEEeehhhhhc
Q 004604 386 GTLVVCPAS-VLRQ---WARELEDKVPDKAALSVLIYHGGSRTK-DPVEL--AKYDVVLTTYSIVTN 445 (743)
Q Consensus 386 ~tLIV~P~S-ll~q---W~~Ei~k~~~~~~~l~V~iy~G~~r~~-~~~~l--~~~DVVITTY~~l~~ 445 (743)
..|||.|.- |..| -...|..|++ .++...+-|+.... +...+ ....|+|.|-+.+..
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~---~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~d 144 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLP---NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLD 144 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhh---ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHH
Confidence 479999985 4344 4555666665 68888888885332 22222 346799999887753
No 139
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=90.71 E-value=3.9 Score=41.37 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=27.1
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHH
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~ 318 (743)
+|-+-|++++..++.... +-.+|-=.-|.|||...-+++.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-----~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-----RVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-----SEEEEEESTTSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC-----eEEEEEECCCCCHHHHHHHHHH
Confidence 367899999999985432 1246666799999986555543
No 140
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=90.47 E-value=0.24 Score=57.37 Aligned_cols=44 Identities=27% Similarity=0.429 Sum_probs=32.7
Q ss_pred cccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHH
Q 004604 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 271 ~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~ 320 (743)
+...|-+-|+.|+.+...... + -|+--..|.|||.+.+-+|...
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~--l----~~I~GPPGTGKT~TlvEiI~ql 225 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNKD--L----LIIHGPPGTGKTRTLVEIISQL 225 (649)
T ss_pred CCccccHHHHHHHHHHhccCC--c----eEeeCCCCCCceeeHHHHHHHH
Confidence 345688899999999886532 2 2455579999999998888643
No 141
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=90.16 E-value=0.88 Score=53.90 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=65.9
Q ss_pred CCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCC
Q 004604 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (743)
Q Consensus 266 ~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d 345 (743)
.|+....+.|-|+|.+++.-+-..+. -+..--.-.|||+.|=-.|+.-.+.
T Consensus 121 ~pAk~YPF~LDpFQ~~aI~Cidr~eS-------VLVSAHTSAGKTVVAeYAIA~sLr~---------------------- 171 (1041)
T KOG0948|consen 121 PPAKTYPFTLDPFQSTAIKCIDRGES-------VLVSAHTSAGKTVVAEYAIAMSLRE---------------------- 171 (1041)
T ss_pred CcccCCCcccCchHhhhhhhhcCCce-------EEEEeecCCCcchHHHHHHHHHHHh----------------------
Confidence 34444567799999999976654432 3455557899999886555432110
Q ss_pred CCCCCcccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCC
Q 004604 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRT 424 (743)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~ 424 (743)
..+++--.|- +|-.|=.+|+..-|.+ |-...|.-.
T Consensus 172 --------------------------------------kQRVIYTSPIKALSNQKYREl~~EF~D-----VGLMTGDVT- 207 (1041)
T KOG0948|consen 172 --------------------------------------KQRVIYTSPIKALSNQKYRELLEEFKD-----VGLMTGDVT- 207 (1041)
T ss_pred --------------------------------------cCeEEeeChhhhhcchhHHHHHHHhcc-----cceeeccee-
Confidence 1224555564 4556778888877654 444455432
Q ss_pred CChhhhccCCEEEeehhhhhccC
Q 004604 425 KDPVELAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 425 ~~~~~l~~~DVVITTY~~l~~e~ 447 (743)
.-..+-++|+|-++|++-+
T Consensus 208 ----InP~ASCLVMTTEILRsML 226 (1041)
T KOG0948|consen 208 ----INPDASCLVMTTEILRSML 226 (1041)
T ss_pred ----eCCCCceeeeHHHHHHHHH
Confidence 2245678999999999754
No 142
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=89.91 E-value=1.3 Score=47.04 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=44.7
Q ss_pred ccccCccEEEEcCCcccC--ChhhHHHHHHHhcc-cCcEEEEecCCCCCCHHHHHHHHHhhCCCCC
Q 004604 507 LAKVGWFRVVLDEAQTIK--NHRTQVARACCSLR-AKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569 (743)
Q Consensus 507 L~~i~w~rVIlDEAH~IK--N~~Sk~skal~~L~-a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~ 569 (743)
|.-....++|||||..+- ....+.+...+.|. ....+++|+|- +.|+.-+.++..+++.
T Consensus 165 L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpv 226 (400)
T KOG0328|consen 165 LRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPV 226 (400)
T ss_pred ccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCce
Confidence 333445679999999984 45788999889886 66788899995 4677777888777764
No 143
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=89.43 E-value=1.8 Score=52.80 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=37.5
Q ss_pred CcEEEEeChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhccC
Q 004604 385 AGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 385 ~~tLIV~P~Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e~ 447 (743)
+++=||..+--| ..|...+-+|++ |+|-+....-........=.+||+-+|...|.-++
T Consensus 120 kgVhVVTvNdYLA~RDae~mg~vy~fLG----LsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDY 182 (925)
T PRK12903 120 KGVIVSTVNEYLAERDAEEMGKVFNFLG----LSVGINKANMDPNLKREAYACDITYSVHSELGFDY 182 (925)
T ss_pred CceEEEecchhhhhhhHHHHHHHHHHhC----CceeeeCCCCChHHHHHhccCCCeeecCcccchhh
Confidence 446677766555 579999999984 77765544322223334446788888877666443
No 144
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=89.42 E-value=2.4 Score=52.46 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=36.3
Q ss_pred cEEEEeChh-hH---HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhccC
Q 004604 386 GTLVVCPAS-VL---RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 386 ~tLIV~P~S-ll---~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e~ 447 (743)
++=||..+- |. ..|...+-+|+ .|+|-+.............=.+||+..|-..|.-++
T Consensus 181 gVHvVTvNDYLA~RDaewm~p~y~fl----GLtVg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDY 242 (1025)
T PRK12900 181 GVHVVTVNDYLAQRDKEWMNPVFEFH----GLSVGVILNTMRPEERREQYLCDITYGTNNEFGFDY 242 (1025)
T ss_pred CcEEEeechHhhhhhHHHHHHHHHHh----CCeeeeeCCCCCHHHHHHhCCCcceecCCCcccccc
Confidence 345555554 43 67999999998 477766644333333344456788887776666544
No 145
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.32 E-value=2.3 Score=51.33 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=74.4
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcc
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
..|-+-|..++.-+.... ... .-.+|.--.|-|||=.-+-+|.....
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~-~~~--~~~Ll~GvTGSGKTEvYl~~i~~~L~------------------------------ 243 (730)
T COG1198 197 LALNQEQQAAVEAILSSL-GGF--APFLLDGVTGSGKTEVYLEAIAKVLA------------------------------ 243 (730)
T ss_pred cccCHHHHHHHHHHHHhc-ccc--cceeEeCCCCCcHHHHHHHHHHHHHH------------------------------
Confidence 368889999999888663 111 22588889999999766666643211
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh----
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP---- 427 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~---- 427 (743)
..+.+||++|- ++..|-.+.|+..|+ .+|.++|..-.....
T Consensus 244 ------------------------------~GkqvLvLVPEI~Ltpq~~~rf~~rFg----~~v~vlHS~Ls~~er~~~W 289 (730)
T COG1198 244 ------------------------------QGKQVLVLVPEIALTPQLLARFKARFG----AKVAVLHSGLSPGERYRVW 289 (730)
T ss_pred ------------------------------cCCEEEEEeccccchHHHHHHHHHHhC----CChhhhcccCChHHHHHHH
Confidence 12458999997 788999999998885 668888876543322
Q ss_pred --hhhccCCEEEeehhhhhc
Q 004604 428 --VELAKYDVVLTTYSIVTN 445 (743)
Q Consensus 428 --~~l~~~DVVITTY~~l~~ 445 (743)
...++..|||=|.+.+-.
T Consensus 290 ~~~~~G~~~vVIGtRSAlF~ 309 (730)
T COG1198 290 RRARRGEARVVIGTRSALFL 309 (730)
T ss_pred HHHhcCCceEEEEechhhcC
Confidence 123677899988877653
No 146
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.83 E-value=2.8 Score=47.85 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=40.2
Q ss_pred EEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCC-CCChhhh-ccCCEEEeehhhhhc
Q 004604 387 TLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSR-TKDPVEL-AKYDVVLTTYSIVTN 445 (743)
Q Consensus 387 tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r-~~~~~~l-~~~DVVITTY~~l~~ 445 (743)
-||+||. .+..|-..|.+++... ..++++..||+.. ......| ....+||+|-+.+.-
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~-ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid 359 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKA-YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLID 359 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhh-ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHH
Confidence 4777886 5889999999987543 4787777776543 2222222 567899999887763
No 147
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=88.78 E-value=2.2 Score=51.68 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=23.3
Q ss_pred ccEEEEcCCcccCCh--------hhHHHHHHHhc--ccCcEEEEecC
Q 004604 512 WFRVVLDEAQTIKNH--------RTQVARACCSL--RAKRRWCLSGT 548 (743)
Q Consensus 512 w~rVIlDEAH~IKN~--------~Sk~skal~~L--~a~~R~lLTGT 548 (743)
||+|||||+-.+-++ .......+..+ .+++.+++-||
T Consensus 143 yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ 189 (824)
T PF02399_consen 143 YDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDAD 189 (824)
T ss_pred cCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCC
Confidence 899999998554221 11222223333 68888999888
No 148
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=88.72 E-value=3.8 Score=48.64 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=31.6
Q ss_pred cCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCC
Q 004604 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQ 551 (743)
Q Consensus 510 i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiq 551 (743)
..+++||||||-.+-.. ...+.+..+....|++|.|=|-|
T Consensus 258 l~~dvlIiDEaSMvd~~--l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 258 LPLDVLVVDEASMVDLP--LMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred CcccEEEEcccccCCHH--HHHHHHHhcCCCCEEEEECChhh
Confidence 35789999999999643 55666777888899999997654
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=88.66 E-value=2.8 Score=51.96 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=36.0
Q ss_pred cEEEEeChh-hH---HHHHHHHHHhCCCCCCcEEEEEeCCC-CCCChhhhccCCEEEeehhhhhccC
Q 004604 386 GTLVVCPAS-VL---RQWARELEDKVPDKAALSVLIYHGGS-RTKDPVELAKYDVVLTTYSIVTNEV 447 (743)
Q Consensus 386 ~tLIV~P~S-ll---~qW~~Ei~k~~~~~~~l~V~iy~G~~-r~~~~~~l~~~DVVITTY~~l~~e~ 447 (743)
++=||..+- |. ..|...+-+|++ |+|-+..... ........=.+||+-+|-..|.-++
T Consensus 212 gVHvVTVNDYLA~RDaewmgply~fLG----Lsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDY 274 (1112)
T PRK12901 212 GVHVVTVNDYLAKRDSEWMGPLYEFHG----LSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDY 274 (1112)
T ss_pred CcEEEEechhhhhccHHHHHHHHHHhC----CceeecCCCCCCHHHHHHhCCCcceecCCCcccccc
Confidence 345555554 43 679999999984 7777654322 2223334446788888776666544
No 150
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=87.95 E-value=2.3 Score=53.16 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=37.3
Q ss_pred cEEEEeCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehh
Q 004604 386 GTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYS 441 (743)
Q Consensus 386 ~tLIV~P~-Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~ 441 (743)
...-|+|. +|+.-|...|.++..+- .++|.-..|... .....+....|+++|-+
T Consensus 366 KIVYIAPmKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~-l~~~qieeTqVIV~TPE 420 (1674)
T KOG0951|consen 366 KIVYIAPMKALVQEMVGSFSKRLAPL-GITVLELTGDSQ-LGKEQIEETQVIVTTPE 420 (1674)
T ss_pred eEEEEeeHHHHHHHHHHHHHhhcccc-CcEEEEeccccc-chhhhhhcceeEEeccc
Confidence 35667775 78899999999998753 566666666543 23445566678888754
No 151
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=87.59 E-value=5.8 Score=48.36 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=30.4
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCC
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQN 552 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN 552 (743)
..++||||||+.+-.. ...+.+..+....|++|-|=|-|-
T Consensus 416 ~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 416 DCDLLIVDESSMMDTW--LALSLLAALPDHARLLLVGDTDQL 455 (720)
T ss_pred cCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEEECccccc
Confidence 4578999999999543 345556667778899999977654
No 152
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=87.24 E-value=4.2 Score=48.53 Aligned_cols=41 Identities=24% Similarity=0.168 Sum_probs=33.1
Q ss_pred cCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCC
Q 004604 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQN 552 (743)
Q Consensus 510 i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN 552 (743)
..+++||||||-.+-. ...++.+..+....|++|-|=|-|=
T Consensus 264 l~~dvlIvDEaSMvd~--~lm~~ll~al~~~~rlIlvGD~~QL 304 (615)
T PRK10875 264 LHLDVLVVDEASMVDL--PMMARLIDALPPHARVIFLGDRDQL 304 (615)
T ss_pred CCCCeEEEChHhcccH--HHHHHHHHhcccCCEEEEecchhhc
Confidence 4578999999999953 4566777888888999999987654
No 153
>PRK04296 thymidine kinase; Provisional
Probab=86.59 E-value=1.9 Score=43.42 Aligned_cols=36 Identities=25% Similarity=0.122 Sum_probs=23.1
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc-ccCcEEEEecC
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGT 548 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L-~a~~R~lLTGT 548 (743)
.+++|||||||.+.. .+....+..+ .....+++||-
T Consensus 78 ~~dvviIDEaq~l~~--~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 78 KIDCVLIDEAQFLDK--EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCEEEEEccccCCH--HHHHHHHHHHHHcCCeEEEEec
Confidence 468899999999843 2344444443 34456777764
No 154
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.15 E-value=0.54 Score=46.49 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=13.2
Q ss_pred hhccCCEEEeehhhhhc
Q 004604 429 ELAKYDVVLTTYSIVTN 445 (743)
Q Consensus 429 ~l~~~DVVITTY~~l~~ 445 (743)
....+||||++|..+-.
T Consensus 116 ~~~~adivi~~y~yl~~ 132 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFD 132 (174)
T ss_dssp CGGG-SEEEEETHHHHS
T ss_pred hcccCCEEEeCHHHHhh
Confidence 44678999999999875
No 155
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=85.96 E-value=1.4 Score=50.74 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=42.3
Q ss_pred cEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhh--hccCCEEEeehhhhhc
Q 004604 386 GTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE--LAKYDVVLTTYSIVTN 445 (743)
Q Consensus 386 ~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~--l~~~DVVITTY~~l~~ 445 (743)
-.|||+|.- |..|-.+.|...++. ..++|....|+-....... -...||||.|-+.|-.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlwe 326 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWE 326 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHH
Confidence 379999985 778888888876654 3789998888754332221 2367999999888754
No 156
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=85.63 E-value=6.1 Score=48.16 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=69.0
Q ss_pred CcEEEEeChh-hH---HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhccCCCCCCCchHHhhh
Q 004604 385 AGTLVVCPAS-VL---RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADE 460 (743)
Q Consensus 385 ~~tLIV~P~S-ll---~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~ 460 (743)
+++.||...- |. ..|...+-.|.. ++|.+....-........=..||.-+|-+.+.-++-+...+...
T Consensus 122 kgVhvVTvNdYLA~RDae~m~~l~~~LG----lsvG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~---- 193 (822)
T COG0653 122 KGVHVVTVNDYLARRDAEWMGPLYEFLG----LSVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQ---- 193 (822)
T ss_pred CCcEEeeehHHhhhhCHHHHHHHHHHcC----CceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccH----
Confidence 5577887764 33 569999999984 66665544433333334446788777776666554321111000
Q ss_pred hcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccCChhhHHHHHHHhcccC
Q 004604 461 KNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK 540 (743)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~ 540 (743)
...-....++.|+||+..|-=. .++
T Consensus 194 --------------------------------------------ee~vqr~~~faIvDEvDSILID-----------EAR 218 (822)
T COG0653 194 --------------------------------------------EEKVQRGLNFAIVDEVDSILID-----------EAR 218 (822)
T ss_pred --------------------------------------------HHhhhccCCeEEEcchhheeee-----------ccc
Confidence 0011235778999999876211 466
Q ss_pred cEEEEecCCCCCCHHHHHHHHHhh
Q 004604 541 RRWCLSGTPIQNSIDDLYSYFRFL 564 (743)
Q Consensus 541 ~R~lLTGTPiqN~l~EL~sLl~FL 564 (743)
-.+++|| |...+......+.+|+
T Consensus 219 tPLiISG-~~~~~~~~Y~~~~~~v 241 (822)
T COG0653 219 TPLIISG-PAEDSSELYKKVDDLV 241 (822)
T ss_pred cceeeec-ccccCchHHHHHHHHH
Confidence 6799999 9998854444444444
No 157
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=84.08 E-value=1.9 Score=51.55 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.6
Q ss_pred ceEEEccCCCchHHHHHHHHH
Q 004604 298 GGILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 298 GGILADdMGLGKTiqaIAli~ 318 (743)
-.|+|-+.|-|||-|.=-|+.
T Consensus 273 vvIIcGeTGsGKTTQvPQFLY 293 (1172)
T KOG0926|consen 273 VVIICGETGSGKTTQVPQFLY 293 (1172)
T ss_pred eEEEecCCCCCccccchHHHH
Confidence 369999999999999988874
No 158
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=82.18 E-value=3.5 Score=45.54 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=29.4
Q ss_pred cchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHH
Q 004604 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 275 L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~ 319 (743)
.--+|..|+.-++.-.-. + ..|.-.-|.|||+-|+|..+.
T Consensus 229 rn~eQ~~ALdlLld~dI~-l----V~L~G~AGtGKTlLALaAgle 268 (436)
T COG1875 229 RNAEQRVALDLLLDDDID-L----VSLGGKAGTGKTLLALAAGLE 268 (436)
T ss_pred ccHHHHHHHHHhcCCCCC-e----EEeeccCCccHhHHHHHHHHH
Confidence 344999999888754432 1 356667899999999988764
No 159
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=81.74 E-value=3.8 Score=50.47 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=35.0
Q ss_pred EEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCC-CCCChhhh-ccCCEEEeehhhhh
Q 004604 387 TLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGS-RTKDPVEL-AKYDVVLTTYSIVT 444 (743)
Q Consensus 387 tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~-r~~~~~~l-~~~DVVITTY~~l~ 444 (743)
.|||||.- +..|-.+++.++... ..++++..+|.. .......+ ...+|||+|-+...
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmi 500 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMI 500 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhh
Confidence 69999984 667766666666544 356666555544 33333333 23788888866543
No 160
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=79.65 E-value=6.7 Score=46.35 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=34.6
Q ss_pred CCCCccccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHH
Q 004604 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 266 ~P~~~~~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~ 318 (743)
.|+.. .....|||++-+.-|-... +.--.+.=-.-+|||..++.+|.
T Consensus 9 ~pG~w-~~~~~Py~~eimd~~~~~~-----v~~Vv~~k~aQ~GkT~~~~n~~g 55 (557)
T PF05876_consen 9 EPGPW-RTDRTPYLREIMDALSDPS-----VREVVVMKSAQVGKTELLLNWIG 55 (557)
T ss_pred CCCCC-CCCCChhHHHHHHhcCCcC-----ccEEEEEEcchhhHhHHHHhhce
Confidence 45553 6789999999988876543 33356777789999997777764
No 161
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=79.49 E-value=3.7 Score=47.08 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=40.5
Q ss_pred cEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCh--hhhccCCEEEeehhhhhc
Q 004604 386 GTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--VELAKYDVVLTTYSIVTN 445 (743)
Q Consensus 386 ~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~--~~l~~~DVVITTY~~l~~ 445 (743)
..+|++|.- |..|-+.|-.++...- ..+++..-|..+..+. .....++|||.|-..|..
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~gceiviatPgrLid 385 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLID 385 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhhccceeeecCchHHHH
Confidence 368999986 5577888888776543 5666666666544333 334568999999887754
No 162
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=79.37 E-value=14 Score=40.63 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=39.5
Q ss_pred EEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC--ChhhhccCCEEEeehhhhhcc
Q 004604 387 TLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVTNE 446 (743)
Q Consensus 387 tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~--~~~~l~~~DVVITTY~~l~~e 446 (743)
.||+.|.. +-.|-.++|.- .+..-.+++.++.|....- +.....+.+|||+|-+.+...
T Consensus 78 alvlTPTrELA~QiaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~ 139 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADH 139 (442)
T ss_pred EEEecchHHHHHHHHHHHHH-hcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccc
Confidence 69999986 66787777763 4443477888877765322 222335678999998877643
No 163
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=79.27 E-value=3.5 Score=47.86 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=36.8
Q ss_pred EEEEeCh-hhHHHHHHHHHHhCC-CCCCcEEEEEeCCCCCC---ChhhhccCCEEEeehhhhhcc
Q 004604 387 TLVVCPA-SVLRQWARELEDKVP-DKAALSVLIYHGGSRTK---DPVELAKYDVVLTTYSIVTNE 446 (743)
Q Consensus 387 tLIV~P~-Sll~qW~~Ei~k~~~-~~~~l~V~iy~G~~r~~---~~~~l~~~DVVITTY~~l~~e 446 (743)
.+||.|. .|+.|-..|..+..- ++..+++..+....... ....-..||+.|.|-..+...
T Consensus 212 a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~ 276 (593)
T KOG0344|consen 212 ALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGL 276 (593)
T ss_pred EEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHH
Confidence 6999997 578999999988651 23345544444432111 122335678888887666543
No 164
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=79.25 E-value=16 Score=44.97 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=30.0
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHH
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~ 320 (743)
.|-.-|++|+...+.-+.- .++--=.|.|||-+..++|..+
T Consensus 669 ~LN~dQr~A~~k~L~aedy------~LI~GMPGTGKTTtI~~LIkiL 709 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDY------ALILGMPGTGKTTTISLLIKIL 709 (1100)
T ss_pred hcCHHHHHHHHHHHhccch------heeecCCCCCchhhHHHHHHHH
Confidence 5788999999888765542 2333347999999888888554
No 165
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=78.56 E-value=1.5 Score=40.50 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=27.1
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhc--ccCcEEEEecCC
Q 004604 513 FRVVLDEAQTIKNHRTQVARACCSL--RAKRRWCLSGTP 549 (743)
Q Consensus 513 ~rVIlDEAH~IKN~~Sk~skal~~L--~a~~R~lLTGTP 549 (743)
.+|||||+|.+. +......++.+ .....++|.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 579999999984 25555666666 666789999999
No 166
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=78.09 E-value=1.8 Score=52.56 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=25.5
Q ss_pred cccchhhHHHHHHHHHhhhccccccce-EEEc-cCCCchHHHHHHHH
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGG-ILAD-DQGLGKTISIIALI 317 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GG-ILAD-dMGLGKTiqaIAli 317 (743)
...|+-|.+-..-+.+.........++ ++.. ..|.|||+--+.=+
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPa 70 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAG 70 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHH
Confidence 467899988665555433321000122 3343 79999999765433
No 167
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=76.93 E-value=5.9 Score=41.85 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.2
Q ss_pred eEEEccCCCchHHHHHHHHHH
Q 004604 299 GILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 299 GILADdMGLGKTiqaIAli~~ 319 (743)
-||.=..|.|||..|-++...
T Consensus 45 vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 478889999999988777643
No 168
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=76.33 E-value=17 Score=37.86 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=71.9
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
.+-+|+-|.+-+..|.+-. .+.+.++=--||-|||-..+=+++.....
T Consensus 21 ~iliR~~Q~~ia~~mi~~~----~~~n~v~QlnMGeGKTsVI~Pmla~~LAd---------------------------- 68 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISPP----SGKNSVMQLNMGEGKTSVIVPMLALALAD---------------------------- 68 (229)
T ss_pred CceeeHHHHHHHHHHhCCC----CCCCeEeeecccCCccchHHHHHHHHHcC----------------------------
Confidence 4569999999999998532 23567888999999998777666543210
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-Chhh-
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVE- 429 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~Sll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~-~~~~- 429 (743)
..+=+-||||.+++.|-.+-+...+..-..-+|+.+.=+.... +...
T Consensus 69 -------------------------------g~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~ 117 (229)
T PF12340_consen 69 -------------------------------GSRLVRVIVPKALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETL 117 (229)
T ss_pred -------------------------------CCcEEEEEcCHHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHH
Confidence 0122679999999999988888877532223444433333222 1111
Q ss_pred ----------hccCCEEEeehhhhhc
Q 004604 430 ----------LAKYDVVLTTYSIVTN 445 (743)
Q Consensus 430 ----------l~~~DVVITTY~~l~~ 445 (743)
.....|+|++-+.+.+
T Consensus 118 ~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 118 EKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred HHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 1356788988877665
No 169
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=75.00 E-value=11 Score=47.01 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=40.2
Q ss_pred ccEEEEcCCcccCChh---hHHHHHHHhc----ccCcEEEEecCCCCCCHHHHHHHHHhhCCCCC
Q 004604 512 WFRVVLDEAQTIKNHR---TQVARACCSL----RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569 (743)
Q Consensus 512 w~rVIlDEAH~IKN~~---Sk~skal~~L----~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~ 569 (743)
.-++|+||||.+..+. -.-++.+..| ...-.++||+|=-..--.|+...|+.-++..+
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~ 450 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELF 450 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCccee
Confidence 4579999999986542 1233444433 33357899999888888899888887766543
No 170
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=74.61 E-value=9.3 Score=42.92 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=66.1
Q ss_pred cEEEEeChh-hHHH---HHHHHHHhCCCCCCcEEE-EEeCCCCCCChhhhc-cCCEEEeehhhhhccCCCCCCCchHHhh
Q 004604 386 GTLVVCPAS-VLRQ---WARELEDKVPDKAALSVL-IYHGGSRTKDPVELA-KYDVVLTTYSIVTNEVPKQPSVDEEEAD 459 (743)
Q Consensus 386 ~tLIV~P~S-ll~q---W~~Ei~k~~~~~~~l~V~-iy~G~~r~~~~~~l~-~~DVVITTY~~l~~e~~~~~~~~~~~~~ 459 (743)
+.||+.|.. |..| ...++.+++ .++.. +|+|.+-......+. ..||||.|-..+..-...
T Consensus 92 RalilsptreLa~qtlkvvkdlgrgt----~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve---------- 157 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGRGT----KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE---------- 157 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhcccc----chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh----------
Confidence 479999986 4444 445555544 46555 566655444445554 689999887766431100
Q ss_pred hhcccccCCcchhhhhhhhhhcccccccccCCCCCCCCCCcccCCCCccccCccEEEEcCCcccC--ChhhHHHHHHHhc
Q 004604 460 EKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIK--NHRTQVARACCSL 537 (743)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IK--N~~Sk~skal~~L 537 (743)
. .|.--...+||+|||.+|- ...-+..+.+.+|
T Consensus 158 ------------m---------------------------------~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl 192 (529)
T KOG0337|consen 158 ------------M---------------------------------TLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRL 192 (529)
T ss_pred ------------e---------------------------------eccccceeeeeehhhhHHHhhhhHHHHHHHHHhC
Confidence 0 0112234579999999983 4567888888888
Q ss_pred c-cCcEEEEecC
Q 004604 538 R-AKRRWCLSGT 548 (743)
Q Consensus 538 ~-a~~R~lLTGT 548 (743)
. ....+++|||
T Consensus 193 ~~~~QTllfSat 204 (529)
T KOG0337|consen 193 PESRQTLLFSAT 204 (529)
T ss_pred CCcceEEEEecc
Confidence 3 4478999999
No 171
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=70.68 E-value=80 Score=31.94 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=23.8
Q ss_pred EEEEcCCcccCCh---hhHHHHHHHhc-ccCcEEEEecCCC
Q 004604 514 RVVLDEAQTIKNH---RTQVARACCSL-RAKRRWCLSGTPI 550 (743)
Q Consensus 514 rVIlDEAH~IKN~---~Sk~skal~~L-~a~~R~lLTGTPi 550 (743)
+|||||+|.+... .......+..+ ....++++|+|.-
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 5999999998643 23344444333 3346888888853
No 172
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=69.69 E-value=29 Score=42.36 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=34.6
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecCCCCCCHHHHHHHHHhhCCCCC
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L---~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~ 569 (743)
+|.++||||+|++.+. .....++.| ....+++|+.|=.+.=+.-+.|-+..++...+
T Consensus 119 r~KVIIIDEah~LT~~--A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~L 178 (830)
T PRK07003 119 RFKVYMIDEVHMLTNH--AFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (830)
T ss_pred CceEEEEeChhhCCHH--HHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCc
Confidence 4678999999999542 233344444 34568888888655554555554443443333
No 173
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=69.59 E-value=21 Score=43.06 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=49.8
Q ss_pred cchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCcccc
Q 004604 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLD 354 (743)
Q Consensus 275 L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 354 (743)
..-.|..++.-+.+.-..+. +.-+|---.|-|||+.+..++...
T Consensus 10 ~~~~Q~~ai~~l~~~~~~~~--~~~~l~Gvtgs~kt~~~a~~~~~~---------------------------------- 53 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLTDGE--KHQTLLGVTGSGKTFTMANVIAQV---------------------------------- 53 (655)
T ss_pred CChHHHHHHHHHHHhhhcCC--CcEEEECCCCcHHHHHHHHHHHHh----------------------------------
Confidence 33478888887765543211 123566668999999988877421
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCC
Q 004604 355 KVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPD 409 (743)
Q Consensus 355 ~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~ 409 (743)
.+|+|||||.- +..||.+|++.|+|+
T Consensus 54 -----------------------------~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 54 -----------------------------NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred -----------------------------CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 25699999985 568999999999985
No 174
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=68.11 E-value=23 Score=42.08 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=30.2
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc-------ccC-cEEEEecCCCCCCHHHHHHH
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL-------RAK-RRWCLSGTPIQNSIDDLYSY 560 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L-------~a~-~R~lLTGTPiqN~l~EL~sL 560 (743)
++.+|||||||. +|..+..+..| +.. +.+++|+|-=...+.++|.-
T Consensus 163 kYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 163 KYSVIILDEAHE----RSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred cccEEEEechhh----hhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 477899999995 34444444333 333 56888999766666666654
No 175
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=65.73 E-value=92 Score=27.99 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=26.0
Q ss_pred ccEEEEcCCcccCCh-hhHHHHHHHhcc------cCcEEEEecCCCCC
Q 004604 512 WFRVVLDEAQTIKNH-RTQVARACCSLR------AKRRWCLSGTPIQN 552 (743)
Q Consensus 512 w~rVIlDEAH~IKN~-~Sk~skal~~L~------a~~R~lLTGTPiqN 552 (743)
...||+||++.+... .......+..+. ...++++++++...
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 357999999998322 223334444442 46688888887764
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=65.04 E-value=33 Score=42.43 Aligned_cols=110 Identities=9% Similarity=-0.019 Sum_probs=60.3
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc----ccCcEEEEecCCCCC--CHHHHHHHHHhhCCCCCCcHHHHHHHhccccc
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL----RAKRRWCLSGTPIQN--SIDDLYSYFRFLKYDPYAVYKSFYSTIKIPIS 584 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L----~a~~R~lLTGTPiqN--~l~EL~sLl~FL~p~~~~~~~~F~~~f~~pi~ 584 (743)
.+..||+||||++....+-.+ .++.. +..+..++|..|-.. ...-+-.+++-|......-|..|..
T Consensus 31 ~itgiiv~~Ahr~~~~~~eaF-I~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk~L~i~~v~l~prf~~------- 102 (814)
T TIGR00596 31 LITGILVLRADRIIESSQEAF-ILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMRNLFLRHVYLWPRFHV------- 102 (814)
T ss_pred HccEEEEeecccccccccHHH-HHHHHHHhCCCcceEEecCCCcccccchHHHHHHHHHhCcCeEEEeCCCch-------
Confidence 356799999999965433222 22222 344678899999753 3344444444444332222222211
Q ss_pred CCchhHHHHHHHhhhceEEEEecCcccCCCCccCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004604 585 RNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFAD 655 (743)
Q Consensus 585 ~~~~~~~~~L~~lL~~~mLRRtK~dv~~g~pil~LPpk~e~vv~v~Ls~~Qr~lY~~l~~~~~~~~~~~~~ 655 (743)
+|.. .+.=-+.....+.|+||+.-+++...+.+-....+.+...
T Consensus 103 ------------------------~V~~---~l~~~~~~V~ei~V~l~~~m~~Iq~~l~~~l~~~l~eLkr 146 (814)
T TIGR00596 103 ------------------------EVAS---SLEKHKAEVIELHVSLTDSMSQIQSAILECLNKCIAELKR 146 (814)
T ss_pred ------------------------HHHH---HhccCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 0110013466788999999888888777665555555443
No 177
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=64.87 E-value=13 Score=39.85 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.1
Q ss_pred ceEEEccCCCchHHHHHHHHHHH
Q 004604 298 GGILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 298 GGILADdMGLGKTiqaIAli~~~ 320 (743)
+-+|--+.|.|||..|.++....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 45777899999999987776543
No 178
>PF13173 AAA_14: AAA domain
Probab=63.96 E-value=7.7 Score=36.12 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=25.6
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCC
Q 004604 513 FRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQN 552 (743)
Q Consensus 513 ~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN 552 (743)
.+||+||+|++.+.....-..+. -....++++||.-...
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d-~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVD-NGPNIKIILTGSSSSL 101 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHH-hccCceEEEEccchHH
Confidence 46999999999876433322222 2245799999985433
No 179
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=63.55 E-value=18 Score=39.16 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.4
Q ss_pred ceEEEccCCCchHHHHHHHHHH
Q 004604 298 GGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 298 GGILADdMGLGKTiqaIAli~~ 319 (743)
.-+|.=+.|.|||..+.++...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4578889999999999988753
No 180
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=62.00 E-value=4.7 Score=45.49 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=32.0
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHHhhCCCCC-----CcHHHHHHHh
Q 004604 539 AKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY-----AVYKSFYSTI 579 (743)
Q Consensus 539 a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~-----~~~~~F~~~f 579 (743)
.++..++||||+.|.+.|+|++.++|.++.+ ..+..|...|
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ergl~~fd~wast~ 518 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWASTF 518 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccHHHHhhhhhhhhHHHHH
Confidence 3567899999999999999999999998754 2344455544
No 181
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=61.84 E-value=49 Score=38.11 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=23.4
Q ss_pred ccEEEEcCCcccCChhh---HHHHHHHhc-ccCcEEEEe--cCC
Q 004604 512 WFRVVLDEAQTIKNHRT---QVARACCSL-RAKRRWCLS--GTP 549 (743)
Q Consensus 512 w~rVIlDEAH~IKN~~S---k~skal~~L-~a~~R~lLT--GTP 549 (743)
.++|||||+|.+.+... ..+..+..+ .....+++| +.|
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 46899999999976432 223333333 344568888 445
No 182
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=59.52 E-value=33 Score=38.11 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHH
Q 004604 279 QKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 279 Q~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~ 320 (743)
|..++..+......+.-...-++.-..|+|||..+..++...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 444555555443322222346778899999999998887543
No 183
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=58.96 E-value=45 Score=41.37 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.2
Q ss_pred eEEEccCCCchHHHHHHHHHH
Q 004604 299 GILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 299 GILADdMGLGKTiqaIAli~~ 319 (743)
.||.-+.|-|||-|.=-+++.
T Consensus 68 vii~getGsGKTTqlP~~lle 88 (845)
T COG1643 68 VIIVGETGSGKTTQLPQFLLE 88 (845)
T ss_pred EEEeCCCCCChHHHHHHHHHh
Confidence 699999999999998877753
No 184
>CHL00181 cbbX CbbX; Provisional
Probab=57.40 E-value=27 Score=37.59 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.6
Q ss_pred eEEEccCCCchHHHHHHHHHH
Q 004604 299 GILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 299 GILADdMGLGKTiqaIAli~~ 319 (743)
-+|-=..|.|||..|-++...
T Consensus 62 ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 377789999999999888754
No 185
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=57.25 E-value=3.5 Score=48.71 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=26.9
Q ss_pred hCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhcc
Q 004604 406 KVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446 (743)
Q Consensus 406 ~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~e 446 (743)
.++.+..++++-|+|+.+. ...+++|+-.|..+-.+
T Consensus 302 Lv~lGk~~~~CPYY~SR~a-----vp~aqlV~LPYQ~LL~~ 337 (821)
T KOG1133|consen 302 LVALGKELRGCPYYASRRA-----VPQAQLVTLPYQLLLHE 337 (821)
T ss_pred HHHhhhhcCCCCchhhhhc-----cccccEEeccHHHHHhH
Confidence 3344457888899998654 35689999999999764
No 186
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.96 E-value=4.8 Score=48.93 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=33.7
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHH
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~ 320 (743)
++||.|++-..-+.+--.. ...++|=--.|.|||+.+|+..+..
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~---~~~~llEsPTGtGKTlslL~~aL~~ 53 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDR---GDEAILEMPSGTGKTISLLSLILAY 53 (705)
T ss_pred CCCHHHHHHHHHHHHHhcc---CCceEEeCCCCCCccHHHHHHHHHH
Confidence 4699999988877765443 2347888889999999999887654
No 187
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=56.82 E-value=4.9 Score=49.48 Aligned_cols=65 Identities=29% Similarity=0.323 Sum_probs=43.3
Q ss_pred ccccCc---cEEEEcCCcccCChh---------hHHHHHHHhcccC--------cEEEEecCCCCCCHHHHHHHHHhhCC
Q 004604 507 LAKVGW---FRVVLDEAQTIKNHR---------TQVARACCSLRAK--------RRWCLSGTPIQNSIDDLYSYFRFLKY 566 (743)
Q Consensus 507 L~~i~w---~rVIlDEAH~IKN~~---------Sk~skal~~L~a~--------~R~lLTGTPiqN~l~EL~sLl~FL~p 566 (743)
+....| +.+++||+|.+.+.. ...+..+..+... ....+++||......+++....++.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (866)
T COG0553 205 LLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDP 284 (866)
T ss_pred hhcccccchhhhhcchHhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccc
Confidence 334445 789999999987742 3444444433211 23478999999999888887777777
Q ss_pred CCCCc
Q 004604 567 DPYAV 571 (743)
Q Consensus 567 ~~~~~ 571 (743)
..+..
T Consensus 285 ~~~~~ 289 (866)
T COG0553 285 LRLAD 289 (866)
T ss_pred cchhh
Confidence 65555
No 188
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=55.86 E-value=1e+02 Score=34.70 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=23.3
Q ss_pred ccEEEEcCCcccCChhh---HHHHHHHhc-ccCcEEEEecC
Q 004604 512 WFRVVLDEAQTIKNHRT---QVARACCSL-RAKRRWCLSGT 548 (743)
Q Consensus 512 w~rVIlDEAH~IKN~~S---k~skal~~L-~a~~R~lLTGT 548 (743)
.++|||||.|.+.+... ..+..+..+ .....+++|++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 46899999999976432 123333333 34466888876
No 189
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=55.52 E-value=1e+02 Score=35.25 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.0
Q ss_pred eEEEccCCCchHHHHHHHHHH
Q 004604 299 GILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 299 GILADdMGLGKTiqaIAli~~ 319 (743)
-+|.-..|+|||.-+-|+...
T Consensus 151 l~l~G~~G~GKThL~~ai~~~ 171 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNY 171 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467788999999988887643
No 190
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=55.40 E-value=24 Score=39.98 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=35.3
Q ss_pred EEEEeChh-hHHHHHHHHHHhCCCC-CCcEEEEEeCCC-CCC-ChhhhccCCEEEeehhhhhcc
Q 004604 387 TLVVCPAS-VLRQWARELEDKVPDK-AALSVLIYHGGS-RTK-DPVELAKYDVVLTTYSIVTNE 446 (743)
Q Consensus 387 tLIV~P~S-ll~qW~~Ei~k~~~~~-~~l~V~iy~G~~-r~~-~~~~l~~~DVVITTY~~l~~e 446 (743)
.+|+||.- |+.|-...|++.+.-- ..++++-...+. .+. ........||||+|-..+-..
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH
Confidence 68999974 7788888887653210 134444333221 111 123345689999998877653
No 191
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=55.15 E-value=1.5e+02 Score=37.25 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=30.0
Q ss_pred ccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHh
Q 004604 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (743)
Q Consensus 274 ~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~ 321 (743)
+-+.++..-+..+.+... -|+.-|.|-|||.|+--+|+...
T Consensus 173 Pa~~~r~~Il~~i~~~qV-------vvIsGeTGcGKTTQvpQfiLd~~ 213 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQV-------VVISGETGCGKTTQVPQFILDEA 213 (924)
T ss_pred ccHHHHHHHHHHHHhCce-------EEEeCCCCCCchhhhhHHHHHHH
Confidence 345566666666654433 48888999999999999997543
No 192
>PRK08084 DNA replication initiation factor; Provisional
Probab=55.11 E-value=1.4e+02 Score=31.05 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=22.7
Q ss_pred cEEEEcCCcccCChh---hHHHHHHHhc-ccC-cEEEEecC
Q 004604 513 FRVVLDEAQTIKNHR---TQVARACCSL-RAK-RRWCLSGT 548 (743)
Q Consensus 513 ~rVIlDEAH~IKN~~---Sk~skal~~L-~a~-~R~lLTGT 548 (743)
++|||||+|.+.... ...+..+..+ ... .++++||+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~ 139 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGD 139 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 579999999996532 1223333333 233 47999998
No 193
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=53.82 E-value=1.4e+02 Score=31.98 Aligned_cols=50 Identities=10% Similarity=0.073 Sum_probs=28.5
Q ss_pred ccEEEEcCCcccCChh--hHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHH
Q 004604 512 WFRVVLDEAQTIKNHR--TQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYF 561 (743)
Q Consensus 512 w~rVIlDEAH~IKN~~--Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl 561 (743)
..+||+||+|.+.... ......+.......++++|++....-+..+.+-+
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 3479999999983322 1122223333556788888876554444444433
No 194
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=53.65 E-value=54 Score=40.60 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=32.6
Q ss_pred CcEEEEeChhh-HHHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhhc
Q 004604 385 AGTLVVCPASV-LRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445 (743)
Q Consensus 385 ~~tLIV~P~Sl-l~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~~ 445 (743)
+..|.|.|--. +.-=..++..+. .+..+.|-.|.|.-. .......-+|.|+|.+.-..
T Consensus 270 r~~llilp~vsiv~Ek~~~l~~~~-~~~G~~ve~y~g~~~--p~~~~k~~sv~i~tiEkans 328 (1008)
T KOG0950|consen 270 RNVLLILPYVSIVQEKISALSPFS-IDLGFPVEEYAGRFP--PEKRRKRESVAIATIEKANS 328 (1008)
T ss_pred hceeEecceeehhHHHHhhhhhhc-cccCCcchhhcccCC--CCCcccceeeeeeehHhhHh
Confidence 34788888644 433344444443 334677878885432 22233455688888776544
No 195
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=52.85 E-value=62 Score=38.98 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=32.8
Q ss_pred ccccCccEEEEcCCcccCChhhHHHHHHHhc--ccCcEEEEecC--C---------CCCCHHHHHHHHHhhCC
Q 004604 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSL--RAKRRWCLSGT--P---------IQNSIDDLYSYFRFLKY 566 (743)
Q Consensus 507 L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L--~a~~R~lLTGT--P---------iqN~l~EL~sLl~FL~p 566 (743)
+....++++||||||.|+. ......+-.+ .....|.+|-| . +.|..++|.+.+.|+-+
T Consensus 348 iRGqtfDLLIVDEAqFIk~--~al~~ilp~l~~~n~k~I~ISS~Ns~~~sTSFL~nLk~a~~~lLNVVsYvCd 418 (738)
T PHA03368 348 IRGQDFNLLFVDEANFIRP--DAVQTIMGFLNQTNCKIIFVSSTNTGKASTSFLYNLKGAADELLNVVTYICD 418 (738)
T ss_pred ccCCcccEEEEechhhCCH--HHHHHHHHHHhccCccEEEEecCCCCccchHHHHhhcCchhhheeeEEEECh
Confidence 4556899999999999985 2333333222 33345566543 1 33444555554445543
No 196
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=52.16 E-value=2.4e+02 Score=32.31 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=22.7
Q ss_pred ccEEEEcCCcccCChhh---HHHHHHHhc-ccCcEEEEecC
Q 004604 512 WFRVVLDEAQTIKNHRT---QVARACCSL-RAKRRWCLSGT 548 (743)
Q Consensus 512 w~rVIlDEAH~IKN~~S---k~skal~~L-~a~~R~lLTGT 548 (743)
.+++||||.|.+-+... .....+..+ .....+++|++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 56899999999855432 233333333 33456777765
No 197
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=51.60 E-value=71 Score=38.63 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=51.8
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhhcccchhhhccccccccccCCCCCCCCCc
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...|.++|..++.-+...-..+. ...+|---.|-|||+.+.+++..
T Consensus 10 ~~~~~~~Q~~ai~~l~~~~~~~~--~~~ll~Gl~gs~ka~lia~l~~~-------------------------------- 55 (652)
T PRK05298 10 PYKPAGDQPQAIEELVEGIEAGE--KHQTLLGVTGSGKTFTMANVIAR-------------------------------- 55 (652)
T ss_pred CCCCChHHHHHHHHHHHhhhcCC--CcEEEEcCCCcHHHHHHHHHHHH--------------------------------
Confidence 34688899999987765543211 12355566788999987765531
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCcEEEEeChh-hHHHHHHHHHHhCCC
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPD 409 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~tLIV~P~S-ll~qW~~Ei~k~~~~ 409 (743)
..+++|||||.. ...+|.+++..|+++
T Consensus 56 -------------------------------~~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 56 -------------------------------LQRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred -------------------------------hCCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 124699999985 678999999999874
No 198
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.03 E-value=1.6e+02 Score=35.78 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.1
Q ss_pred ceEEEccCCCchHHHHHHHHHH
Q 004604 298 GGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 298 GGILADdMGLGKTiqaIAli~~ 319 (743)
.-||.-.-|.|||..|.+++..
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3489999999999988888754
No 199
>PRK04195 replication factor C large subunit; Provisional
Probab=50.89 E-value=1.2e+02 Score=35.12 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=18.8
Q ss_pred ccceEEEccCCCchHHHHHHHHH
Q 004604 296 CLGGILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 296 ~~GGILADdMGLGKTiqaIAli~ 318 (743)
.+..||.=..|.|||..+-+++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999998887763
No 200
>PF13245 AAA_19: Part of AAA domain
Probab=50.45 E-value=34 Score=29.12 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.2
Q ss_pred EEEccCCCchHHHHHHHHHHHh
Q 004604 300 ILADDQGLGKTISIIALIQMQR 321 (743)
Q Consensus 300 ILADdMGLGKTiqaIAli~~~~ 321 (743)
++-=-.|-|||-+++.++....
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4466789999999888887543
No 201
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=49.97 E-value=24 Score=37.20 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=40.1
Q ss_pred cEEEEeChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-Chhhhc-cCCEEEeehhhhhc
Q 004604 386 GTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELA-KYDVVLTTYSIVTN 445 (743)
Q Consensus 386 ~tLIV~P~S-ll~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~-~~~~l~-~~DVVITTY~~l~~ 445 (743)
.+||+|-.. |..|-.+|.++|..--...+|-++.|+-..+ +...+. -..||+-|-+.+..
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilA 174 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILA 174 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHH
Confidence 379999875 6688888887764321278899999886544 333333 34677777776654
No 202
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=49.77 E-value=99 Score=38.73 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=38.0
Q ss_pred ccEEEEcCCcccCChh-hHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHH
Q 004604 512 WFRVVLDEAQTIKNHR-TQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562 (743)
Q Consensus 512 w~rVIlDEAH~IKN~~-Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~ 562 (743)
..+||+||.|.|.|.. +....-+-.|-..--++|++| ++++..++-.++
T Consensus 633 IRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 633 IRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred ceEEEechhhhccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 4579999999999864 566666666666677999999 677888777666
No 203
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.45 E-value=50 Score=40.26 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=10.6
Q ss_pred cEEEEcCCcccC
Q 004604 513 FRVVLDEAQTIK 524 (743)
Q Consensus 513 ~rVIlDEAH~IK 524 (743)
..||+||||+|-
T Consensus 222 ~ivI~DEAHNL~ 233 (705)
T TIGR00604 222 SIVIFDEAHNLD 233 (705)
T ss_pred CEEEEECccchH
Confidence 579999999994
No 204
>PLN03025 replication factor C subunit; Provisional
Probab=48.68 E-value=30 Score=37.65 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=38.2
Q ss_pred CccEEEEcCCcccCChh-hHHHHHHHhcccCcEEEEecCCCCCCHHHHHHHHHhhCCCCCCc
Q 004604 511 GWFRVVLDEAQTIKNHR-TQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~-Sk~skal~~L~a~~R~lLTGTPiqN~l~EL~sLl~FL~p~~~~~ 571 (743)
.|.+|||||+|.+-... ....+.+.......+++++.++...-+..|-+-...++..++..
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~ 160 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 160 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCH
Confidence 47899999999994321 11111222224457899998887766677777666666555543
No 205
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=48.43 E-value=1.5e+02 Score=36.51 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=31.0
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHH
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~ 319 (743)
...|-+-|+.++.-++... +=.+|---.|.|||-.+-+++..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~------~~~il~G~aGTGKTtll~~i~~~ 391 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSG------DIAVVVGRAGTGKSTMLKAAREA 391 (744)
T ss_pred cCCCCHHHHHHHHHHhcCC------CEEEEEecCCCCHHHHHHHHHHH
Confidence 3568899999998887421 11478888999999887776643
No 206
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.71 E-value=73 Score=34.87 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=37.4
Q ss_pred EEEEeChhh----HHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC-hhhh-ccCCEEEeehhhhh
Q 004604 387 TLVVCPASV----LRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVEL-AKYDVVLTTYSIVT 444 (743)
Q Consensus 387 tLIV~P~Sl----l~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~-~~~l-~~~DVVITTY~~l~ 444 (743)
.+|+||..- .+|-..|+.+|+ .++|.+..|+...++ ...+ ....++|.|-+.+-
T Consensus 156 ~~ilVPtrelALQtSqvc~~lskh~----~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIl 215 (459)
T KOG0326|consen 156 AIILVPTRELALQTSQVCKELSKHL----GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRIL 215 (459)
T ss_pred EEEEeecchhhHHHHHHHHHHhccc----CeEEEEecCCcccccceeeecCceEEEEcCChhHH
Confidence 799999642 378889999987 588888888765543 2222 34567777776654
No 207
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=46.04 E-value=2.9e+02 Score=26.84 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=17.8
Q ss_pred EEEccCCCchHHHHHHHHHHH
Q 004604 300 ILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 300 ILADdMGLGKTiqaIAli~~~ 320 (743)
|+.-.-|.||+-.+.+++...
T Consensus 23 L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 23 LFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 677788999999999998654
No 208
>PHA00673 acetyltransferase domain containing protein
Probab=45.07 E-value=39 Score=33.14 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=37.7
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecCCCCCCHH
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSID 555 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L---~a~~R~lLTGTPiqN~l~ 555 (743)
..+-|.||+.|+=+.-.++..+.+... ...++|-+|+||-.|.++
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 356799999999998888888877665 556899999999999875
No 209
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=44.93 E-value=1.2e+02 Score=36.48 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=22.9
Q ss_pred ccEEEEcCCcccCChhh---HHHHHHHhc-ccCcEEEEecC
Q 004604 512 WFRVVLDEAQTIKNHRT---QVARACCSL-RAKRRWCLSGT 548 (743)
Q Consensus 512 w~rVIlDEAH~IKN~~S---k~skal~~L-~a~~R~lLTGT 548 (743)
.++||||+.|.+.+... ..+..+..+ .....+++|+.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 46799999999977543 233333333 33455777775
No 210
>PRK08116 hypothetical protein; Validated
Probab=44.80 E-value=2.7e+02 Score=29.60 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=19.8
Q ss_pred ccceEEEccCCCchHHHHHHHHHH
Q 004604 296 CLGGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 296 ~~GGILADdMGLGKTiqaIAli~~ 319 (743)
..|-+|.=+.|.|||.-+.|++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~ 137 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANE 137 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356788889999999999888754
No 211
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=43.14 E-value=73 Score=39.59 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHH
Q 004604 277 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 277 phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~ 320 (743)
+|-+..|..++...+.. ..=||.-.-|+|||..+..|...+
T Consensus 21 e~v~~~L~~~i~~~ri~---Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 21 EHVTEPLSTALDSGRIN---HAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHHHHHHHHHHHhCCCC---ceEEEECCCCCCHHHHHHHHHHHh
Confidence 34444566666543321 223788899999999998887543
No 212
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=41.96 E-value=1.9e+02 Score=32.55 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=16.8
Q ss_pred EEEccCCCchHHHHHHHHHH
Q 004604 300 ILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 300 ILADdMGLGKTiqaIAli~~ 319 (743)
+|.=+.|.|||.-++.++..
T Consensus 86 LI~G~pG~GKStLllq~a~~ 105 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAAR 105 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 67789999999988888753
No 213
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=41.83 E-value=79 Score=37.66 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.2
Q ss_pred ccccCccEEEEcCCcccCC
Q 004604 507 LAKVGWFRVVLDEAQTIKN 525 (743)
Q Consensus 507 L~~i~w~rVIlDEAH~IKN 525 (743)
+..-.|++++|||||.||-
T Consensus 295 iRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 295 IRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred ccCCCCCEEEEehhhccCH
Confidence 5566799999999999974
No 214
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=41.64 E-value=31 Score=29.82 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=31.1
Q ss_pred cEEEEeChhh-HH-HHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhh
Q 004604 386 GTLVVCPASV-LR-QWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (743)
Q Consensus 386 ~tLIV~P~Sl-l~-qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~ 442 (743)
++|||||... .+ .-...++++++.. .+.+.+-+.+...-.. ...++|+||||-..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 4899999854 22 3566677776532 3333332222211111 34689999999765
No 215
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=41.31 E-value=45 Score=38.65 Aligned_cols=44 Identities=23% Similarity=0.129 Sum_probs=34.2
Q ss_pred cchhhHHHHHHHHHhhh-----ccccccceEEEccCCCchHHHHHHHHH
Q 004604 275 LLKHQKIALAWMLQKET-----RSLHCLGGILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 275 L~phQ~~gl~wml~~e~-----~~~~~~GGILADdMGLGKTiqaIAli~ 318 (743)
.....++++.|.+.+-. .-..++|.||.--.|.|||+.+-|+..
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 56677888888876654 223457889999999999999988874
No 216
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.67 E-value=2.3e+02 Score=32.07 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=36.4
Q ss_pred CccEEEEcCCcccCChhh---HHHHHHHhcc--cCcEEEEecCCCCCCHHHHHHHHHhhCCC
Q 004604 511 GWFRVVLDEAQTIKNHRT---QVARACCSLR--AKRRWCLSGTPIQNSIDDLYSYFRFLKYD 567 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~S---k~skal~~L~--a~~R~lLTGTPiqN~l~EL~sLl~FL~p~ 567 (743)
..++||||++.+.....- ...+.+..+. ....++|++|==+|.+.+.+.-+..+.+.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~ 315 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK 315 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC
Confidence 367899999998753222 2222222232 24668899998888888887766655543
No 217
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.26 E-value=38 Score=39.95 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.6
Q ss_pred cCCCchHHHHHHHHHHH
Q 004604 304 DQGLGKTISIIALIQMQ 320 (743)
Q Consensus 304 dMGLGKTiqaIAli~~~ 320 (743)
..|-|||+.|.+||+..
T Consensus 5 atgsgkt~~ma~lil~~ 21 (812)
T COG3421 5 ATGSGKTLVMAGLILEC 21 (812)
T ss_pred ccCCChhhHHHHHHHHH
Confidence 36999999999999864
No 218
>PRK08727 hypothetical protein; Validated
Probab=39.94 E-value=2.2e+02 Score=29.46 Aligned_cols=20 Identities=35% Similarity=0.328 Sum_probs=16.0
Q ss_pred eEEEccCCCchHHHHHHHHH
Q 004604 299 GILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 299 GILADdMGLGKTiqaIAli~ 318 (743)
-+|.-..|.|||--+.|+..
T Consensus 44 l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47777899999987777764
No 219
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=38.45 E-value=2.4e+02 Score=35.94 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=28.3
Q ss_pred ccEEEEcCCcccCChhhHHHHHHHhc-ccCcEEEEecCCCCCCH
Q 004604 512 WFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSI 554 (743)
Q Consensus 512 w~rVIlDEAH~IKN~~Sk~skal~~L-~a~~R~lLTGTPiqN~l 554 (743)
-++||||||-.+... ...+.+... ....+++|.|=|-|-..
T Consensus 434 ~~vlIVDEASMv~~~--~m~~LL~~a~~~garvVLVGD~~QLps 475 (988)
T PRK13889 434 RDVLVIDEAGMVGTR--QLERVLSHAADAGAKVVLVGDPQQLQA 475 (988)
T ss_pred CcEEEEECcccCCHH--HHHHHHHhhhhCCCEEEEECCHHHcCC
Confidence 468999999999643 333444333 56789999998776543
No 220
>PRK14974 cell division protein FtsY; Provisional
Probab=38.22 E-value=3.3e+02 Score=30.14 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=15.9
Q ss_pred EEEccCCCchHHHHHHHHHHH
Q 004604 300 ILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 300 ILADdMGLGKTiqaIAli~~~ 320 (743)
++.-..|.|||-++..++...
T Consensus 144 ~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 144 VFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 455589999999887777543
No 221
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=36.71 E-value=2e+02 Score=37.28 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=38.6
Q ss_pred CcEEEEeChhhH-----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhh
Q 004604 385 AGTLVVCPASVL-----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 444 (743)
Q Consensus 385 ~~tLIV~P~Sll-----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~ 444 (743)
.+..-|+|...+ .-|..-|..-. .+.++ --|+....+...+...+|+|.|.+.+.
T Consensus 1187 ~~~vyi~p~~~i~~~~~~~w~~~f~~~~----G~~~~-~l~ge~s~~lkl~~~~~vii~tpe~~d 1246 (1674)
T KOG0951|consen 1187 GRAVYIAPLEEIADEQYRDWEKKFSKLL----GLRIV-KLTGETSLDLKLLQKGQVIISTPEQWD 1246 (1674)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcccc----CceEE-ecCCccccchHHhhhcceEEechhHHH
Confidence 457788898754 45777776542 35444 445566778888999999999987764
No 222
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=36.25 E-value=20 Score=39.42 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=29.1
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecCCCCCC
Q 004604 513 FRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNS 553 (743)
Q Consensus 513 ~rVIlDEAH~IKN~~Sk~skal~~L~a~~R~lLTGTPiqN~ 553 (743)
-+|||||||+ -.-.+.-..+.+|-...+..+||.+.|=.
T Consensus 245 AfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiD 283 (348)
T COG1702 245 AFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQID 283 (348)
T ss_pred eEEEEecccc--cchhhhceeeeeecCCceEEEEcCccccc
Confidence 3699999998 22344445566778889999999998754
No 223
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=35.21 E-value=69 Score=40.22 Aligned_cols=57 Identities=19% Similarity=0.361 Sum_probs=39.2
Q ss_pred CCCCcEEEEeCh-hhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhh
Q 004604 382 RPAAGTLVVCPA-SVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 444 (743)
Q Consensus 382 ~~~~~tLIV~P~-Sll----~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~ 444 (743)
.|.+++.+|+|. .++ .-|..-+.. + .++++-..|.... +.....+.++||||.+..-
T Consensus 971 ~p~~kvvyIap~kalvker~~Dw~~r~~~---~--g~k~ie~tgd~~p-d~~~v~~~~~~ittpek~d 1032 (1230)
T KOG0952|consen 971 YPGSKVVYIAPDKALVKERSDDWSKRDEL---P--GIKVIELTGDVTP-DVKAVREADIVITTPEKWD 1032 (1230)
T ss_pred CCCccEEEEcCCchhhcccccchhhhccc---C--CceeEeccCccCC-ChhheecCceEEccccccc
Confidence 344678999996 454 456654432 1 5778877776543 4778889999999987654
No 224
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=34.92 E-value=2.1e+02 Score=32.96 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=23.1
Q ss_pred ccEEEEcCCcccCChhh---HHHHHHHhc-ccCcEEEEecC
Q 004604 512 WFRVVLDEAQTIKNHRT---QVARACCSL-RAKRRWCLSGT 548 (743)
Q Consensus 512 w~rVIlDEAH~IKN~~S---k~skal~~L-~a~~R~lLTGT 548 (743)
.++||+||.|.+.+... ..+..+..+ .....+++|++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~ 243 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISST 243 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecC
Confidence 46899999999976432 222222223 34567888885
No 225
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=34.06 E-value=3.8e+02 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=14.8
Q ss_pred EEccCCCchHHHHHHHHHH
Q 004604 301 LADDQGLGKTISIIALIQM 319 (743)
Q Consensus 301 LADdMGLGKTiqaIAli~~ 319 (743)
|.=..|.|||..+..++..
T Consensus 4 i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 4 VFGPTGSGKTTLALQLALN 22 (165)
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 4445899999999888754
No 226
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=33.82 E-value=84 Score=35.12 Aligned_cols=42 Identities=29% Similarity=0.304 Sum_probs=29.5
Q ss_pred ccccCccEEEEcCCccc--CChhhHHHHHHHhcccC-cEEEEecC
Q 004604 507 LAKVGWFRVVLDEAQTI--KNHRTQVARACCSLRAK-RRWCLSGT 548 (743)
Q Consensus 507 L~~i~w~rVIlDEAH~I--KN~~Sk~skal~~L~a~-~R~lLTGT 548 (743)
|..-.....|+|||..+ ++...+.+.....+..+ ..+++|+|
T Consensus 165 l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT 209 (397)
T KOG0327|consen 165 LSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSAT 209 (397)
T ss_pred ccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeeccc
Confidence 44445667999999987 45667777777777443 56777888
No 227
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.15 E-value=2.8e+02 Score=31.70 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=35.4
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc-c-----cCcEEEEecCCCCCCHHHHHHHHHhhCC
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL-R-----AKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L-~-----a~~R~lLTGTPiqN~l~EL~sLl~FL~p 566 (743)
.+++||||.+-+....... ...+..+ . ....++|++|+=.+.+.+++..++.+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRL-IEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHH-HHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 3688999998765432222 2222222 2 2457889999888888888877776654
No 228
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.40 E-value=1.9e+02 Score=34.94 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=16.8
Q ss_pred eEEEccCCCchHHHHHHHHH
Q 004604 299 GILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 299 GILADdMGLGKTiqaIAli~ 318 (743)
-|+--|.|-|||-|.--++.
T Consensus 374 vvivgETGSGKTTQl~QyL~ 393 (1042)
T KOG0924|consen 374 VVIVGETGSGKTTQLAQYLY 393 (1042)
T ss_pred EEEEecCCCCchhhhHHHHH
Confidence 57888999999999877664
No 229
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=32.28 E-value=80 Score=27.01 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=28.4
Q ss_pred EEEEeChhh-HHH-HHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhh
Q 004604 387 TLVVCPASV-LRQ-WARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (743)
Q Consensus 387 tLIV~P~Sl-l~q-W~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~ 442 (743)
+|||||... .++ -...++++++.. .+...+-...-.. ....++|+||||-..
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~-~i~~~~~~~~~~~---~~~~~~DlIisT~~l 55 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKEL-GIEAEVEHTDLGS---AKASSADIIVTSKDL 55 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCcEEEEEecccc---cCCCCCCEEEEchhh
Confidence 799999854 233 344666666532 2322222221111 124679999999853
No 230
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=32.10 E-value=66 Score=27.15 Aligned_cols=53 Identities=25% Similarity=0.512 Sum_probs=31.9
Q ss_pred cEEEEeChhhH--HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhh
Q 004604 386 GTLVVCPASVL--RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (743)
Q Consensus 386 ~tLIV~P~Sll--~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~ 442 (743)
.+||||+...- .--+..+++.++. ..++....... -......++|+||||...
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~---~~~v~~~~~~~-~~~~~~~~~DlIitT~~l 56 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPE---IEIIDVISLRE-LEEVDLDDYDLIISTVPL 56 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCC---ceEEEEEeHHH-HhhCcccCCCEEEEcccc
Confidence 37999998643 3467889998874 33322111111 111135689999999864
No 231
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=31.67 E-value=28 Score=41.80 Aligned_cols=48 Identities=13% Similarity=0.058 Sum_probs=35.5
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhh
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS 322 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~ 322 (743)
....|++|.+...-+..-.. ...++|+=-..|.|||+..|+.+.....
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~---~~~~~~iEapTGtGKTl~yL~~al~~~~ 60 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALK---GGEGLLIEAPTGTGKTLAYLLPALAYAR 60 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHc---CCCcEEEECCCCccHHHHHHHHHHHHHH
Confidence 45689999998877764332 2234677788999999999988876553
No 232
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=30.15 E-value=71 Score=33.99 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=22.1
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhcc----cCcEEEEecCC
Q 004604 513 FRVVLDEAQTIKNHRTQVARACCSLR----AKRRWCLSGTP 549 (743)
Q Consensus 513 ~rVIlDEAH~IKN~~Sk~skal~~L~----a~~R~lLTGTP 549 (743)
-.+++||||.+-...=..-+.+..+. ..-+++|-|-|
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp 173 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP 173 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc
Confidence 46999999999654433333333331 22457777766
No 233
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.87 E-value=45 Score=26.39 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=12.6
Q ss_pred HHHHHHHhhhccccccccceeeE
Q 004604 707 LIDLLSRLETSSAICCVCSVSFY 729 (743)
Q Consensus 707 l~~Ll~~l~~~~~~c~~C~~~l~ 729 (743)
+...+..|......||+|+++|.
T Consensus 9 ~~k~i~~l~~~~~~CPlC~r~l~ 31 (54)
T PF04423_consen 9 LKKYIEELKEAKGCCPLCGRPLD 31 (54)
T ss_dssp HHHHHHHHTT-SEE-TTT--EE-
T ss_pred HHHHHHHHhcCCCcCCCCCCCCC
Confidence 44556667655559999999974
No 234
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.82 E-value=2.9e+02 Score=31.92 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHhh--hccccccceEEEccCCCchHHHHHHHHHHHh
Q 004604 277 KHQKIALAWMLQKE--TRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (743)
Q Consensus 277 phQ~~gl~wml~~e--~~~~~~~GGILADdMGLGKTiqaIAli~~~~ 321 (743)
|+|+.-+..+.... ......+-++|.=-=|=|||.-+.+++++..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l 47 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYML 47 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHH
Confidence 68887777665321 1111123355666678899998887776543
No 235
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=29.64 E-value=1.6e+02 Score=35.30 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=11.7
Q ss_pred ccEEEEcCCcccCC
Q 004604 512 WFRVVLDEAQTIKN 525 (743)
Q Consensus 512 w~rVIlDEAH~IKN 525 (743)
-.+||+||||++-+
T Consensus 221 ~~v~v~DEAH~l~d 234 (654)
T COG1199 221 NDVVVFDEAHNLPD 234 (654)
T ss_pred ccEEEEeccccchH
Confidence 45799999999955
No 236
>PRK05642 DNA replication initiation factor; Validated
Probab=28.95 E-value=3.6e+02 Score=27.92 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=23.0
Q ss_pred cEEEEcCCcccCChhh---HHHHHHHhc-ccCcEEEEecC
Q 004604 513 FRVVLDEAQTIKNHRT---QVARACCSL-RAKRRWCLSGT 548 (743)
Q Consensus 513 ~rVIlDEAH~IKN~~S---k~skal~~L-~a~~R~lLTGT 548 (743)
+++|+|+.|.+.+... ..+..+..+ ....++++|+|
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 5799999999865432 233333333 34577888887
No 237
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.91 E-value=2.6e+02 Score=31.99 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.4
Q ss_pred cccceEEEccCCCchHHHHHHHHH
Q 004604 295 HCLGGILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 295 ~~~GGILADdMGLGKTiqaIAli~ 318 (743)
..+|=+|+-..|-|||+.+.|++.
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAs 208 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIAT 208 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHh
Confidence 356778999999999999998874
No 238
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=28.55 E-value=1.1e+02 Score=35.86 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=33.2
Q ss_pred cchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHHhhh
Q 004604 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSL 323 (743)
Q Consensus 275 L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~~~~ 323 (743)
.+|-| +.+|.+..+.-....-|+|--.-|.|||+.-++++...+.+
T Consensus 17 iYPEQ---~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~ 62 (755)
T KOG1131|consen 17 IYPEQ---YEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLH 62 (755)
T ss_pred cCHHH---HHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHh
Confidence 56667 56777654432233458998999999999999999876543
No 239
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=28.47 E-value=98 Score=25.45 Aligned_cols=53 Identities=25% Similarity=0.428 Sum_probs=30.2
Q ss_pred EEEEeChhhHH--HHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhh
Q 004604 387 TLVVCPASVLR--QWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (743)
Q Consensus 387 tLIV~P~Sll~--qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~ 442 (743)
+|+||+...-. --...+++.++.. .+...+-...-. ......++|+||||...
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~-~~~~~~~~~~~~--~~~~~~~~dliitt~~~ 56 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKEL-GIEVKVEAQGLS--EVIDLADADLIISTVPL 56 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHC-CCeEEEEEcccc--hhhhcCCccEEEECCcc
Confidence 68999987432 2456666666532 232222221111 10456789999999863
No 240
>PRK07952 DNA replication protein DnaC; Validated
Probab=27.39 E-value=2.4e+02 Score=29.70 Aligned_cols=44 Identities=20% Similarity=0.034 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhhhccc-cccceEEEccCCCchHHHHHHHHHHH
Q 004604 277 KHQKIALAWMLQKETRSL-HCLGGILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 277 phQ~~gl~wml~~e~~~~-~~~GGILADdMGLGKTiqaIAli~~~ 320 (743)
+.|..++..+.+--.... ...|-+|.-..|.|||-.+.|++...
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 356667666554221111 12456889999999999999988643
No 241
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=27.39 E-value=60 Score=27.88 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=30.6
Q ss_pred EEEEeChhh-----H-HHHHHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhh
Q 004604 387 TLVVCPASV-----L-RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443 (743)
Q Consensus 387 tLIV~P~Sl-----l-~qW~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l 443 (743)
.||||+..+ + ..-++.+++. .+.+.+.++. .........++|+||++-+.-
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~-----gi~~~~~~~~-~~~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKEL-----GIEVEVSAGS-ILEVEEIADDADLILLTPQIA 58 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHT-----TECEEEEEEE-TTTHHHHHTT-SEEEEEESSG
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhc-----cCceEEEEec-ccccccccCCCcEEEEcCccc
Confidence 799999743 2 3344444443 4667777766 333334456699999997653
No 242
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=25.49 E-value=36 Score=43.28 Aligned_cols=23 Identities=26% Similarity=0.118 Sum_probs=20.5
Q ss_pred eEEEccCCCchHHHHHHHHHHHh
Q 004604 299 GILADDQGLGKTISIIALIQMQR 321 (743)
Q Consensus 299 GILADdMGLGKTiqaIAli~~~~ 321 (743)
+++||+||+|||+..+++....+
T Consensus 377 ~~~ade~~~qk~~~~l~~~l~~~ 399 (1394)
T KOG0298|consen 377 VQCADEMGWQKTSEKLILELSDL 399 (1394)
T ss_pred eeehhhhhccchHHHHHHHHhcc
Confidence 59999999999999999987653
No 243
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=25.36 E-value=51 Score=34.41 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.3
Q ss_pred eEEEccCCCchHHHHHHHH
Q 004604 299 GILADDQGLGKTISIIALI 317 (743)
Q Consensus 299 GILADdMGLGKTiqaIAli 317 (743)
.+|.=+.|.|||..+-.++
T Consensus 46 ~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4677889999998777665
No 244
>PRK11054 helD DNA helicase IV; Provisional
Probab=25.32 E-value=1.4e+02 Score=36.27 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=29.9
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhcc---cCcEEEEecCCCCC
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSLR---AKRRWCLSGTPIQN 552 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L~---a~~R~lLTGTPiqN 552 (743)
.|+.|+|||+|-+- ....+.+..|. ....+.+.|=|-|.
T Consensus 430 ~~~~IlVDE~QD~s---~~q~~ll~~l~~~~~~~~l~~VGD~~Qs 471 (684)
T PRK11054 430 PWKHILVDEFQDIS---PQRAALLAALRKQNSQTTLFAVGDDWQA 471 (684)
T ss_pred cccEEEEEccccCC---HHHHHHHHHHhccCCCCeEEEEECCCcc
Confidence 59999999999994 45566666663 34678888999886
No 245
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=24.92 E-value=6.4e+02 Score=34.33 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=30.9
Q ss_pred ccccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHH
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 272 ~~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~ 319 (743)
...|-+-|++|+..++.... +-.+|----|.|||-++-+++..
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~d-----r~~~I~G~AGTGKTT~l~~v~~~ 1007 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTD-----RFTVVQGYAGVGKTTQFRAVMSA 1007 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCC-----cEEEEEeCCCCCHHHHHHHHHHH
Confidence 45689999999998874311 22466667899999887666644
No 246
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.69 E-value=59 Score=37.51 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=34.5
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc-------ccC-cEEEEecCCCCCCHHHHHHHHHhh
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL-------RAK-RRWCLSGTPIQNSIDDLYSYFRFL 564 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L-------~a~-~R~lLTGTPiqN~l~EL~sLl~FL 564 (743)
.|.+|||||||. +|..+..+..| +.+ ..+++|+|-...++..+|.=.-+|
T Consensus 159 ~y~viiLDeahE----RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 159 RYGVIILDEAHE----RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLL 216 (699)
T ss_pred cccEEEechhhh----hhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCee
Confidence 589999999995 45555555444 223 567889998877777777544444
No 247
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=24.57 E-value=6.3e+02 Score=25.84 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=23.7
Q ss_pred CccEEEEcCCcccCChhh---HHHHHHHhc-ccCcEEEEec
Q 004604 511 GWFRVVLDEAQTIKNHRT---QVARACCSL-RAKRRWCLSG 547 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~S---k~skal~~L-~a~~R~lLTG 547 (743)
..+++|||..|.+++... ..+..+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 367899999999987642 222222222 4556777777
No 248
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=24.38 E-value=5.4e+02 Score=30.24 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=26.7
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc-ccCcEEEEecCCCCC
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQN 552 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L-~a~~R~lLTGTPiqN 552 (743)
-+|+|.+||+|-+ -...++.|..+ +.+.|+.--+-=+||
T Consensus 295 ~yD~ilIDE~QDF---P~~F~~Lcf~~tkd~KrlvyAyDelQn 334 (660)
T COG3972 295 AYDYILIDESQDF---PQSFIDLCFMVTKDKKRLVYAYDELQN 334 (660)
T ss_pred cccEEEecccccC---CHHHHHHHHHHhcCcceEEEehHhhhc
Confidence 3688999999988 34556666666 445677666555555
No 249
>PRK06893 DNA replication initiation factor; Validated
Probab=24.30 E-value=5.1e+02 Score=26.63 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=15.4
Q ss_pred EEEccCCCchHHHHHHHHH
Q 004604 300 ILADDQGLGKTISIIALIQ 318 (743)
Q Consensus 300 ILADdMGLGKTiqaIAli~ 318 (743)
+|.-..|.|||--+.|+..
T Consensus 43 ~l~G~~G~GKThL~~ai~~ 61 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSN 61 (229)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6778899999987777664
No 250
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=24.00 E-value=6.8e+02 Score=32.41 Aligned_cols=40 Identities=33% Similarity=0.317 Sum_probs=28.6
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhc-ccCcEEEEecCCCCCCH
Q 004604 513 FRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSI 554 (743)
Q Consensus 513 ~rVIlDEAH~IKN~~Sk~skal~~L-~a~~R~lLTGTPiqN~l 554 (743)
++||||||..+-.. ...+.+... .+..+++|-|=|-|-..
T Consensus 470 ~vlVIDEAsMv~~~--~m~~Ll~~~~~~garvVLVGD~~QL~~ 510 (1102)
T PRK13826 470 TVFVLDEAGMVASR--QMALFVEAVTRAGAKLVLVGDPEQLQP 510 (1102)
T ss_pred cEEEEECcccCCHH--HHHHHHHHHHhcCCEEEEECCHHHcCC
Confidence 47999999999543 334444444 46789999998876644
No 251
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=23.69 E-value=3.1e+02 Score=30.66 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=26.0
Q ss_pred ccEEEEcCCcccCChhhHHHHHHHhccc---CcEEEEecCCCC
Q 004604 512 WFRVVLDEAQTIKNHRTQVARACCSLRA---KRRWCLSGTPIQ 551 (743)
Q Consensus 512 w~rVIlDEAH~IKN~~Sk~skal~~L~a---~~R~lLTGTPiq 551 (743)
.+.+++|||..+.. ....++..+|+. ..++.+|.||-.
T Consensus 102 ~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 102 IAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred eeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 47899999999943 344444445542 235999999965
No 252
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=23.42 E-value=3.9e+02 Score=33.55 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHH
Q 004604 279 QKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 279 Q~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~ 319 (743)
|..-+.+|++...++ ...+-||-=+.|.|||..+=+++..
T Consensus 192 r~~ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 192 RDDEIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CHHHHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHH
Confidence 334466666422111 1235689999999999988777643
No 253
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=23.30 E-value=48 Score=36.04 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=26.5
Q ss_pred ccccCccEEEEcCCccc-CChhhHH---HHHHHhcccC--cEEEEecCC
Q 004604 507 LAKVGWFRVVLDEAQTI-KNHRTQV---ARACCSLRAK--RRWCLSGTP 549 (743)
Q Consensus 507 L~~i~w~rVIlDEAH~I-KN~~Sk~---skal~~L~a~--~R~lLTGTP 549 (743)
|..++-.++|+||.|++ .....++ ..+++.|... --+++.||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 66778889999999996 3332333 3334444333 335677875
No 254
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=22.90 E-value=1.3e+03 Score=27.33 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=38.0
Q ss_pred CccccCccEEEEcCCcccCChhhHHHHHHHhcccC--cEE-EE--ecCCCCCCHHHHHHHHHhhC
Q 004604 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK--RRW-CL--SGTPIQNSIDDLYSYFRFLK 565 (743)
Q Consensus 506 ~L~~i~w~rVIlDEAH~IKN~~Sk~skal~~L~a~--~R~-lL--TGTPiqN~l~EL~sLl~FL~ 565 (743)
.....+...+|+||-|..+++.-..+.+...+.++ ..+ .. +|-|...-+.+.+.++.=+.
T Consensus 179 ~~Dg~~~~~~I~DEih~f~~~~~~~~~~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl 243 (546)
T COG4626 179 TVDGLNSVGAIIDELHLFGKQEDMYSEAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVL 243 (546)
T ss_pred cccCCCcceEEEehhhhhcCHHHHHHHHHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHh
Confidence 35667788999999999998764555555555332 333 22 35566666666666665443
No 255
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=22.64 E-value=1e+02 Score=35.09 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=36.7
Q ss_pred ccEEEEcCCcccCCh------hhHHHHHHHhc-ccCcEEEEecCCCCCCHHHHHHHHHhhCC
Q 004604 512 WFRVVLDEAQTIKNH------RTQVARACCSL-RAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (743)
Q Consensus 512 w~rVIlDEAH~IKN~------~Sk~skal~~L-~a~~R~lLTGTPiqN~l~EL~sLl~FL~p 566 (743)
..++|+||||.+.-+ +-.+--+++.. .---.++||+|--..--+|+|..|++-+|
T Consensus 142 L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~P 203 (641)
T KOG0352|consen 142 LRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNP 203 (641)
T ss_pred eeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCc
Confidence 457999999988432 22222222222 22245789999887888999999987765
No 256
>CHL00095 clpC Clp protease ATP binding subunit
Probab=21.99 E-value=2.4e+02 Score=35.08 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=18.6
Q ss_pred ceEEEccCCCchHHHHHHHHHH
Q 004604 298 GGILADDQGLGKTISIIALIQM 319 (743)
Q Consensus 298 GGILADdMGLGKTiqaIAli~~ 319 (743)
+-||-=+.|.|||..+-++...
T Consensus 202 n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999888754
No 257
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=21.68 E-value=1.6e+02 Score=32.43 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=34.3
Q ss_pred cccchhhHHHHHHHHHhhhccccccceEEEccCCCchHHHHHHHHHHH
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (743)
Q Consensus 273 ~~L~phQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIAli~~~ 320 (743)
..+||+|......+........-...=++.-.-|+||+..+.+|+...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 458999999887776553322112334677899999999999998654
No 258
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.57 E-value=5.6e+02 Score=29.40 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=28.5
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc---ccC-cEEEEecCCCCCCHHHHHHHHHhhC
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL---RAK-RRWCLSGTPIQNSIDDLYSYFRFLK 565 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~Sk~skal~~L---~a~-~R~lLTGTPiqN~l~EL~sLl~FL~ 565 (743)
++|+||+|-+=+.-+...........+ ... ..++|++|=-++.+.+....++-+.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~ 378 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIH 378 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCC
Confidence 468899998766433332233322222 222 2355666655555566555555443
No 259
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.21 E-value=1.4e+02 Score=25.79 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=30.7
Q ss_pred cEEEEeChhhH-HHH-HHHHHHhCCCCCCcEEEEEeCCCCCCChhhhccCCEEEeehhhhh
Q 004604 386 GTLVVCPASVL-RQW-ARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 444 (743)
Q Consensus 386 ~tLIV~P~Sll-~qW-~~Ei~k~~~~~~~l~V~iy~G~~r~~~~~~l~~~DVVITTY~~l~ 444 (743)
++||||+...- .+- ...+++.++.. .+.+.+.+..-.... .++|+||||-+...
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~-~~~~~v~~~~~~~~~----~~~Dliitt~~l~~ 57 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKA-GLEIPVTNSAIDELP----SDADLVVTHASLTD 57 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEcchhhCC----CCCCEEEEChHHHH
Confidence 47999997532 222 44455544422 344444444332222 67999999987653
Done!