Query 004604
Match_columns 743
No_of_seqs 376 out of 2485
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 18:36:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004604.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1901-1904//hhsearch_pdb/004604hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 440.7 20.1 337 266-741 228-589 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 436.1 19.1 348 266-741 48-433 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 394.7 28.5 327 267-740 31-357 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 282.8 11.1 245 271-642 150-451 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 197.3 20.8 174 272-569 7-185 (494)
6 2fwr_A DNA repair protein RAD2 1.0 1 1 170.5 15.4 195 271-646 90-286 (472)
7 4a2w_A RIG-I, retinoic acid in 1.0 1 1 162.7 18.4 169 272-558 246-426 (936)
8 1rif_A DAR protein, DNA helica 1.0 1 1 158.2 14.3 166 272-566 111-278 (282)
9 2ykg_A Probable ATP-dependent 1.0 1 1 153.9 17.4 177 273-567 12-208 (696)
10 2oca_A DAR protein, ATP-depend 1.0 1 1 151.8 14.1 167 272-567 111-279 (510)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=440.74 Aligned_cols=337 Identities=25% Similarity=0.394 Sum_probs=259.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 89875454454215999999987020356666609981689726999999999972100221022203321012567888
Q 004604 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (743)
Q Consensus 266 ~P~~~~~~~L~~hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d 345 (743)
.|+......|+|||+.|+.||+.... ..+||||||+||||||+|+|+++......
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~---~~~~~ILademGlGKT~~ai~~i~~l~~~---------------------- 282 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWS---KGDNGILADEMGLGKTVQTVAFISWLIFA---------------------- 282 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHT---TTCCEEECCCTTSSTTHHHHHHHHHHHHH----------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHHH----------------------
T ss_conf 99865799758999999999999851---38998998278753299999999999986----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 88887664321125988999998766654322247899985799958245999999999749999981899994899888
Q 004604 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (743)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIVvP~Sll~qW~~Ei~k~~~~~~~L~V~iy~G~~r~~ 425 (743)
....+++|||||.+++.||.+||.+|+| .+++.+|+|....+
T Consensus 283 -----------------------------------~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r 324 (800)
T 3mwy_W 283 -----------------------------------RRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSR 324 (800)
T ss_dssp -----------------------------------HSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHH
T ss_pred -----------------------------------CCCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCHHHH
T ss_conf -----------------------------------0779988999880389999999999779---96499982777778
Q ss_pred CH--------------HHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 82--------------4330387899414556202899999735776421155457750233444321000000024578
Q 004604 426 DP--------------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKG 491 (743)
Q Consensus 426 ~~--------------~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~k~~~~~~kk~~~~ 491 (743)
.. .....++|+||||+++.++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~-------------------------------------------- 360 (800)
T 3mwy_W 325 DTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR-------------------------------------------- 360 (800)
T ss_dssp HHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH--------------------------------------------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHH--------------------------------------------
T ss_conf 898887762263001344566788990699998649--------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 88887777666888855437129998587445772229999998400692999956799899899999999618899886
Q 004604 492 KKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571 (743)
Q Consensus 492 ~k~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~ska~~~L~a~~RwlLTGTPIqNsl~DL~sLl~FL~p~~~~~ 571 (743)
..|..+.|++||+||||++||..++.++++..+.+.+||+|||||++|++.|||++++||.|+.|..
T Consensus 361 -------------~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~ 427 (800)
T 3mwy_W 361 -------------AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTI 427 (800)
T ss_dssp -------------HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC--
T ss_pred -------------HHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf -------------9983377325641344441471019999999752243897227857799999999999858663674
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999881366557865678999985301578872475458987447999628999980999899999999999999999
Q 004604 572 YKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 651 (743)
Q Consensus 572 ~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dv~~g~pii~LP~k~e~vv~v~LS~~Qr~lY~~l~~~~~~~l~ 651 (743)
...|..... ..........|+.+++++++||+|.++.. .||++.+.++.|+|++.|+++|..+.......+.
T Consensus 428 ~~~~~~~~~---~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~ 499 (800)
T 3mwy_W 428 DQEIDFENQ---DEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALT 499 (800)
T ss_dssp -------CC---TTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---
T ss_pred HHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 344232223---14689999999999757775320876643-----1688279999707999999999999999999986
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CC-----HHHHHHCC-CHHHHHHHHHHHHHCCCC
Q ss_conf 99622976420899999999999981891011455777422-----33-----38997039-978999999984213432
Q 004604 652 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVG-----KI-----SGEMAKRL-PRDMLIDLLSRLETSSAI 720 (743)
Q Consensus 652 ~~~~~g~~~~~~~~iL~~L~rLRqiC~HP~Lv~~~~~~~~~-----~~-----~~e~~~~l-~~~~~~~Ll~~l~~~~~~ 720 (743)
... ......++.++++||++|+||+|+......... .. .......- ....+..++..+..
T Consensus 500 ~~~-----~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~---- 570 (800)
T 3mwy_W 500 AGA-----KGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK---- 570 (800)
T ss_dssp ------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTT----
T ss_pred HCC-----CCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH----
T ss_conf 103-----54544699999999987358654235578998861566555778888766427699999999999752----
Q ss_pred CCCCCEEEEEECCCCHHHCCC
Q ss_conf 335560358504632000135
Q 004604 721 CCVCSVSFYFKRNTSILFLSG 741 (743)
Q Consensus 721 c~~C~~~l~~~~~~~~l~~~~ 741 (743)
..++.|+|++++.+|+++.
T Consensus 571 --~g~kvLIFsq~~~~ld~L~ 589 (800)
T 3mwy_W 571 --DGHRVLIFSQMVRMLDILG 589 (800)
T ss_dssp --TTCCEEEEESCHHHHHHHH
T ss_pred --CCCEEEEEECHHHHHHHHH
T ss_conf --7981899963599999999
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=436.13 Aligned_cols=348 Identities=22% Similarity=0.292 Sum_probs=258.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCC
Q ss_conf 8987545445421599999998702035--66666099816897269999999999721002210222033210125678
Q 004604 266 LPDGLLSVNLLKHQKIALAWMLQKETRS--LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (743)
Q Consensus 266 ~P~~~~~~~L~~hQ~~gl~wml~~e~~~--~~~~GGILADdMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (743)
+++. +...|+|||++|+.||+...... ....|||||||||||||+|+|+++.......
T Consensus 48 ~~p~-l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~------------------- 107 (644)
T 1z3i_X 48 VDPV-LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS------------------- 107 (644)
T ss_dssp CCHH-HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-------------------
T ss_pred ECHH-HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-------------------
T ss_conf 1856-40035199999999999842335445888759610787429999999999999748-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 88888876643211259889999987666543222478999857999582459999999997499999818999948998
Q 004604 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 423 (743)
Q Consensus 344 ~d~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIVvP~Sll~qW~~Ei~k~~~~~~~L~V~iy~G~~r 423 (743)
.......+++|||||.+++.||.+||.+|++. .+.++.++++.+
T Consensus 108 ----------------------------------~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~ 151 (644)
T 1z3i_X 108 ----------------------------------PDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSK 151 (644)
T ss_dssp ----------------------------------TTSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCH
T ss_pred ----------------------------------CCCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CEEEEEEECCCH
T ss_conf ----------------------------------66567778579996589988799999997588--725999808988
Q ss_pred CCCHHH----------HCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 888243----------3038789941455620289999973577642115545775023344432100000002457888
Q 004604 424 TKDPVE----------LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKK 493 (743)
Q Consensus 424 ~~~~~~----------l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~k~~~~~~kk~~~~~k 493 (743)
...... ...++|+||||+++..+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--------------------------------------------- 186 (644)
T 1z3i_X 152 DEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--------------------------------------------- 186 (644)
T ss_dssp HHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH---------------------------------------------
T ss_conf 99999999998733777787579963899876578---------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf 88777766688885543712999858744577222999999840069299995679989989999999961889988679
Q 004604 494 GNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYK 573 (743)
Q Consensus 494 ~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~ska~~~L~a~~RwlLTGTPIqNsl~DL~sLl~FL~p~~~~~~~ 573 (743)
.|....|++||+||||++||..++.++++..+.+.+||+|||||+||++.|||++++||.|++|+++.
T Consensus 187 ------------~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~ 254 (644)
T 1z3i_X 187 ------------VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 254 (644)
T ss_dssp ------------TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHH
T ss_pred ------------HHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf ------------75048865799878622478045999999855567379984673458899999999861887689999
Q ss_pred HHHHHHCCCCCCCC------------HHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHH
Q ss_conf 99988136655786------------567899998530157887247545898744799962899998099989999999
Q 004604 574 SFYSTIKIPISRNS------------LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKK 641 (743)
Q Consensus 574 ~F~~~~~~pi~~~~------------~~~~~~L~~lL~~~mLRRtK~dv~~g~pii~LP~k~e~vv~v~LS~~Qr~lY~~ 641 (743)
.|.+.|..|+.++. .....+|+.++.+|++||+|+++.. .||++.+.++.|+|++.|+++|+.
T Consensus 255 ~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~~ 329 (644)
T 1z3i_X 255 EFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYKL 329 (644)
T ss_dssp HHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHHH
T ss_pred HHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 999863261541677677888999999999999999889998710876764-----279836999983799899999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCHH---------HHHHCCC--HHHH
Q ss_conf 99999999999962297642089999999999998189101145577---74223338---------9970399--7899
Q 004604 642 LESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDF---DSVGKISG---------EMAKRLP--RDML 707 (743)
Q Consensus 642 l~~~~~~~l~~~~~~g~~~~~~~~iL~~L~rLRqiC~HP~Lv~~~~~---~~~~~~~~---------e~~~~l~--~~~~ 707 (743)
+....... ...........++..+++|||+||||.|+..... +....... ....... ...+
T Consensus 330 ~~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l 404 (644)
T 1z3i_X 330 FLKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL 404 (644)
T ss_dssp HHHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHH
T ss_pred HHHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99989999-----9876276214599999999999579998888874154003557764542111000570117489999
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCHHHCCC
Q ss_conf 9999984213432335560358504632000135
Q 004604 708 IDLLSRLETSSAICCVCSVSFYFKRNTSILFLSG 741 (743)
Q Consensus 708 ~~Ll~~l~~~~~~c~~C~~~l~~~~~~~~l~~~~ 741 (743)
..++..+... ...+.++|++++.+++++.
T Consensus 405 ~~ll~~~~~~-----~~~k~lIFs~~~~~~~~l~ 433 (644)
T 1z3i_X 405 DYILAMTRTT-----TSDKVVLVSNYTQTLDLFE 433 (644)
T ss_dssp HHHHHHHHHH-----CCCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHC-----CCCEEEEEECCHHHHHHHH
T ss_conf 9999998646-----9987999980599999999
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=394.66 Aligned_cols=327 Identities=31% Similarity=0.478 Sum_probs=257.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 98754544542159999999870203566666099816897269999999999721002210222033210125678888
Q 004604 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDD 346 (743)
Q Consensus 267 P~~~~~~~L~~hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 346 (743)
|.+ +...|+|||++|+.||..... ..+||||||+||+|||+++|+++......
T Consensus 31 p~~-~~~~L~~~Q~~~v~~l~~~~~---~~~~~ilad~~GlGKT~~ai~~i~~~~~~----------------------- 83 (500)
T 1z63_A 31 PYN-IKANLRPYQIKGFSWMRFMNK---LGFGICLADDMGLGKTLQTIAVFSDAKKE----------------------- 83 (500)
T ss_dssp CCS-CSSCCCHHHHHHHHHHHHHHH---TTCCEEECCCTTSCHHHHHHHHHHHHHHT-----------------------
T ss_pred CHH-HHCCCHHHHHHHHHHHHHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHHC-----------------------
T ss_conf 833-200336999999999999741---79988998089973899999999988755-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
Q ss_conf 88876643211259889999987666543222478999857999582459999999997499999818999948998888
Q 004604 347 DNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD 426 (743)
Q Consensus 347 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIVvP~Sll~qW~~Ei~k~~~~~~~L~V~iy~G~~r~~~ 426 (743)
...+++|||||.+++.||.+||.+|++ .+++.+++|....
T Consensus 84 -----------------------------------~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~-- 123 (500)
T 1z63_A 84 -----------------------------------NELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK-- 123 (500)
T ss_dssp -----------------------------------TCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS--
T ss_pred -----------------------------------CCCCCEEEECCHHHHHHHHHHHHHHCC---CCEEEEEECCCHH--
T ss_conf -----------------------------------899978999038999999999999779---9559997267021--
Q ss_pred HHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24330387899414556202899999735776421155457750233444321000000024578888877776668888
Q 004604 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (743)
Q Consensus 427 ~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~ 506 (743)
.....++|||+||+.+.++. .
T Consensus 124 -~~~~~~~ivi~t~~~l~~~~----------------------------------------------------------~ 144 (500)
T 1z63_A 124 -IKLEDYDIILTTYAVLLRDT----------------------------------------------------------R 144 (500)
T ss_dssp -CCGGGSSEEEEEHHHHTTCH----------------------------------------------------------H
T ss_pred -CCCCCCCEEEEEHHHHHCCC----------------------------------------------------------H
T ss_conf -00357768996379972630----------------------------------------------------------2
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 55437129998587445772229999998400692999956799899899999999618899886799998813665578
Q 004604 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRN 586 (743)
Q Consensus 507 L~~i~w~rVIlDEAH~IKN~~S~~ska~~~L~a~~RwlLTGTPIqNsl~DL~sLl~FL~p~~~~~~~~F~~~~~~pi~~~ 586 (743)
+....|++||+||||.+||..++.++++..+.+.+||+|||||++|++.|||++++||.|++|+++..|...|..|+..+
T Consensus 145 l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~ 224 (500)
T 1z63_A 145 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG 224 (500)
T ss_dssp HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 11787287998084101787689999999600471899746777799999999999858775799899999852511146
Q ss_pred CHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 65678999985301578872475458987447999628999980999899999999999999999996229764208999
Q 004604 587 SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANI 666 (743)
Q Consensus 587 ~~~~~~~L~~lL~~~mLRRtK~dv~~g~pii~LP~k~e~vv~v~LS~~Qr~lY~~l~~~~~~~l~~~~~~g~~~~~~~~i 666 (743)
......+|+.++.++++||++.+.. ....||++.+.++.++|++.|+.+|+.+.......+. ......+...+
T Consensus 225 ~~~~~~~l~~~l~~~~lrr~k~~~~---~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~----~~~~~~~~~~~ 297 (500)
T 1z63_A 225 DNMAKEELKAIISPFILRRTKYDKA---IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMI 297 (500)
T ss_dssp CHHHHHHHHHHHTTTEECCCTTCHH---HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTT----TCCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHEEEECCCCCC---HHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH----HHHCCCCHHHH
T ss_conf 6889999999976674550255424---1122999758999818999999999999999999998----64232106799
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHCC
Q ss_conf 99999999981891011455777422333899703997899999998421343233556035850463200013
Q 004604 667 LLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSVSFYFKRNTSILFLS 740 (743)
Q Consensus 667 L~~L~rLRqiC~HP~Lv~~~~~~~~~~~~~e~~~~l~~~~~~~Ll~~l~~~~~~c~~C~~~l~~~~~~~~l~~~ 740 (743)
+..+++|||+|+||.++.+..... ..+..+ ..+.+++..+.. ...+.++|+++...++.+
T Consensus 298 ~~~l~~lr~~~~~p~l~~~~~~~~--~~s~K~------~~l~~~l~~~~~------~~~k~lvF~~~~~~~~~l 357 (500)
T 1z63_A 298 LSTLLKLKQIVDHPALLKGGEQSV--RRSGKM------IRTMEIIEEALD------EGDKIAIFTQFVDMGKII 357 (500)
T ss_dssp HHHHHHHHHHTTCTHHHHCSCCCS--TTCHHH------HHHHHHHHHHHT------TTCCEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHCCCCCHH--HCCHHH------HHHHHHHHHHHC------CCCCEEEEEEHHHHHHHH
T ss_conf 999999998817998843852011--115529------999999999872------688689997218899999
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=282.84 Aligned_cols=245 Identities=17% Similarity=0.242 Sum_probs=185.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 45445421599999998702035666660998168972699999999997210022102220332101256788888887
Q 004604 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (743)
Q Consensus 271 ~~~~L~~hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (743)
..+.|+|||+.++.|++... ..|+||||+||+|||+++++++......
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------------------------- 197 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQLLS--------------------------- 197 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHHHT---------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHHH---------------------------
T ss_conf 89997099999999999705-----8988987899975999999999999981---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC----C
Q ss_conf 664321125988999998766654322247899985799958245999999999749999981899994899888----8
Q 004604 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK----D 426 (743)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIVvP~Sll~qW~~Ei~k~~~~~~~L~V~iy~G~~r~~----~ 426 (743)
+..+++|||||.+++.||..||.+++. +++.+|+|..... .
T Consensus 198 -------------------------------g~~~rvLIVvP~sLl~Qw~~E~~~~f~----l~v~v~~~~~~~~~~~~~ 242 (968)
T 3dmq_A 198 -------------------------------GAAERVLIIVPETLQHQWLVEMLRRFN----LRFALFDDERYAEAQHDA 242 (968)
T ss_dssp -------------------------------SSCCCEEEECCTTTHHHHHHHHHHHSC----CCCEECCHHHHHHHHHTT
T ss_pred -------------------------------CCCCEEEEEECHHHHHHHHHHHHHHHC----CCEEEECCCHHHHHHHHC
T ss_conf -------------------------------899829999578889999999999869----987998062055543200
Q ss_pred HHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24330387899414556202899999735776421155457750233444321000000024578888877776668888
Q 004604 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (743)
Q Consensus 427 ~~~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~ 506 (743)
...+..++|||+||+.+.+.... ...
T Consensus 243 ~~~~~~~dIvI~T~~~L~~~~~~------------------------------------------------------~~~ 268 (968)
T 3dmq_A 243 YNPFDTEQLVICSLDFARRSKQR------------------------------------------------------LEH 268 (968)
T ss_dssp CSSSTTCSEEEECHHHHHTSTTT------------------------------------------------------THH
T ss_pred CCCCCCCCEEEECHHHHHHCHHH------------------------------------------------------HHH
T ss_conf 36445689899768998648788------------------------------------------------------887
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHH---HHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 554371299985874457722299---9999840--06929999567998998999999996188998867999988136
Q 004604 507 LAKVGWFRVVLDEAQTIKNHRTQV---ARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKI 581 (743)
Q Consensus 507 L~~i~w~rVIlDEAH~IKN~~S~~---ska~~~L--~a~~RwlLTGTPIqNsl~DL~sLl~FL~p~~~~~~~~F~~~~~~ 581 (743)
+....|++||+||||.++|..+.. ++++..| .+.++|+|||||++|++.|+|++++||.|+.|.++..|...+..
T Consensus 269 l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~ 348 (968)
T 3dmq_A 269 LCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKN 348 (968)
T ss_dssp HHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHH
T ss_pred HHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 64158778974446762588875429999999986257858999768766987999999982593011898999999985
Q ss_pred CCC----------C---------------------------------CCHHHHHHHHHHH-----HCEEEEEECCCCCCC
Q ss_conf 655----------7---------------------------------8656789999853-----015788724754589
Q 004604 582 PIS----------R---------------------------------NSLHGYKKLQAVL-----RAIMLRRTKGTFIDG 613 (743)
Q Consensus 582 pi~----------~---------------------------------~~~~~~~~L~~lL-----~~~mLRRtK~dv~~g 613 (743)
... . ........+..++ ..+++|+++..+.
T Consensus 349 ~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-- 426 (968)
T 3dmq_A 349 YCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-- 426 (968)
T ss_dssp HHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC--
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--
T ss_conf 788999999874267899889999998842033678875036222333799999999999861733265632265545--
Q ss_pred CCCCCCCCCEEEEEEEECCHHHHHHHHHH
Q ss_conf 87447999628999980999899999999
Q 004604 614 QPIINLPPKTISLTKVDFSKEEWAFYKKL 642 (743)
Q Consensus 614 ~pii~LP~k~e~vv~v~LS~~Qr~lY~~l 642 (743)
.+|++..+.+.+++++.++..|...
T Consensus 427 ----~~p~r~~~~~~l~~~~~~~~~~~~~ 451 (968)
T 3dmq_A 427 ----GFPKRELHTIKLPLPTQYQTAIKVS 451 (968)
T ss_dssp ----CCCCCCCCEEEECCCHHHHHHHHHH
T ss_pred ----CCCHHHEEEEECCCCHHHHHHHHHH
T ss_conf ----5671115752368999999999987
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=197.34 Aligned_cols=174 Identities=15% Similarity=0.188 Sum_probs=130.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54454215999999987020356666609981689726999999999972100221022203321012567888888876
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~~hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
..+|++||.+++.|++.. ++||+++||+|||+++++++.....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~~----------------------------- 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT----------------------------- 49 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHHHHHHH-----------------------------
T ss_conf 878639999999999619--------9899918998789999999999986-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH-HH
Q ss_conf 643211259889999987666543222478999857999582-4599999999974999998189999489988882-43
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE 429 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIVvP~-Sll~qW~~Ei~k~~~~~~~L~V~iy~G~~r~~~~-~~ 429 (743)
.+.+++|||||. +++.||.+|+.+|+... ..++.+++|....... ..
T Consensus 50 ------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 50 ------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp ------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEEEECSCSCHHHHHHH
T ss_pred ------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCCC-HHHEEEEECCCCHHHHHHH
T ss_conf ------------------------------479859999788899999999999874756-1116876077533556653
Q ss_pred HCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 30387899414556202899999735776421155457750233444321000000024578888877776668888554
Q 004604 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (743)
Q Consensus 430 l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (743)
...++|+|+||+.+...... ..+..
T Consensus 99 ~~~~~ivv~T~~~l~~~~~~-------------------------------------------------------~~~~~ 123 (494)
T 1wp9_A 99 WARAKVIVATPQTIENDLLA-------------------------------------------------------GRISL 123 (494)
T ss_dssp HHHCSEEEECHHHHHHHHHT-------------------------------------------------------TSCCT
T ss_pred CCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCCH
T ss_conf 35798999639999999860-------------------------------------------------------87156
Q ss_pred CCCCEEEECCCCCCCCHHHHHH--HHH-HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 3712999858744577222999--999-84006929999567998998999999996188998
Q 004604 510 VGWFRVVLDEAQTIKNHRTQVA--RAC-CSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569 (743)
Q Consensus 510 i~w~rVIlDEAH~IKN~~S~~s--ka~-~~L~a~~RwlLTGTPIqNsl~DL~sLl~FL~p~~~ 569 (743)
..|.+||+||||.+++...... +.+ ......++|+|||||. |+..+++.++.++....+
T Consensus 124 ~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~ 185 (494)
T 1wp9_A 124 EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHI 185 (494)
T ss_dssp TSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEE
T ss_pred HHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEE
T ss_conf 54108999787566888819999999973288776999956998-885789999985070005
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=170.49 Aligned_cols=195 Identities=20% Similarity=0.190 Sum_probs=146.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 45445421599999998702035666660998168972699999999997210022102220332101256788888887
Q 004604 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (743)
Q Consensus 271 ~~~~L~~hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (743)
....|++||.+++.+++.. ..+||+++||+|||++++.++...
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------ 132 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------ 132 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHC------------------------------
T ss_conf 8998688999999999965-------987999699998899999999980------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCCE-EEEEECCCCCCCHH
Q ss_conf 6643211259889999987666543222478999857999582-459999999997499999818-99994899888824
Q 004604 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALS-VLIYHGGSRTKDPV 428 (743)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIVvP~-Sll~qW~~Ei~k~~~~~~~L~-V~iy~G~~r~~~~~ 428 (743)
.+++|||||. +|+.||.++|.++ .++ +.+++|....
T Consensus 133 ---------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g~~~~---- 170 (472)
T 2fwr_A 133 ---------------------------------STPTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIKE---- 170 (472)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHGGGG-----CGGGEEEBSSSCBC----
T ss_pred ---------------------------------CCCEEEEECCHHHHHHHHHHHHHC-----CCCCEEEECCCCCC----
T ss_conf ---------------------------------999999987999999999999967-----99636998787677----
Q ss_pred HHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33038789941455620289999973577642115545775023344432100000002457888887777666888855
Q 004604 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLA 508 (743)
Q Consensus 429 ~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~ 508 (743)
..+|+|+||+.+..... ..
T Consensus 171 ---~~~Ivv~T~~~l~~~~~----------------------------------------------------------~~ 189 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAE----------------------------------------------------------KL 189 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHH----------------------------------------------------------HH
T ss_pred ---CCCEEEEECHHHHHHHH----------------------------------------------------------HH
T ss_conf ---67789997689997799----------------------------------------------------------73
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf 43712999858744577222999999840069299995679989989999999961889988679999881366557865
Q 004604 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL 588 (743)
Q Consensus 509 ~i~w~rVIlDEAH~IKN~~S~~ska~~~L~a~~RwlLTGTPIqNsl~DL~sLl~FL~p~~~~~~~~F~~~~~~pi~~~~~ 588 (743)
.-.|..||+||||.+.+.... ..+..+.+.++++|||||..+.-.+
T Consensus 190 ~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~-------------------------------- 235 (472)
T 2fwr_A 190 GNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH-------------------------------- 235 (472)
T ss_dssp TTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG--------------------------------
T ss_pred CCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH--------------------------------
T ss_conf 687778999897578976899--9997357781899932766889778--------------------------------
Q ss_pred HHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 6789999853015788724754589874479996289999809998999999999999
Q 004604 589 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS 646 (743)
Q Consensus 589 ~~~~~L~~lL~~~mLRRtK~dv~~g~pii~LP~k~e~vv~v~LS~~Qr~lY~~l~~~~ 646 (743)
..+..++.+.+.++...++..+ .+++.....+.+++++.++..|+.+....
T Consensus 236 ---~~l~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (472)
T 2fwr_A 236 ---EILKEVVGGKVFELFPDSLAGK----HLAKYTIKRIFVPLAEDERVEYEKREKVY 286 (472)
T ss_dssp ---GSHHHHTCCEEEECCHHHHTSC----CCCSEEECCEEECCCHHHHHHTTTTTHHH
T ss_pred ---HHHHHHHCCEEEECCHHHHHCC----CCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf ---9999972985765478987067----67881899998589989999999999999
No 7
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=162.73 Aligned_cols=169 Identities=13% Similarity=0.095 Sum_probs=118.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54454215999999987020356666609981689726999999999972100221022203321012567888888876
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~~hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...|++||..++.+++. ++.+|++++||+|||++++..+......
T Consensus 246 ~~~~r~~Q~~ai~~il~-------g~~~ll~a~TGsGKTl~~~~~i~~~l~~---------------------------- 290 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQN---------------------------- 290 (936)
T ss_dssp --CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHTTTTT----------------------------
T ss_pred CCCCCHHHHHHHHHHHC-------CCCEEEEECCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 89877999999999980-------9989999699845999999999999973----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC--HH
Q ss_conf 643211259889999987666543222478999857999582-459999999997499999818999948998888--24
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PV 428 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIVvP~-Sll~qW~~Ei~k~~~~~~~L~V~iy~G~~r~~~--~~ 428 (743)
......+++|||||. .|+.||.+++.++++.. .+++.+++|+..... ..
T Consensus 291 ---------------------------~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~G~~~~~~~~~~ 342 (936)
T 4a2w_A 291 ---------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 342 (936)
T ss_dssp ---------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECCC-----CCHH
T ss_pred ---------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHH
T ss_conf ---------------------------655689859999698999999999999971216-9559999799631257897
Q ss_pred HHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 3303878994145562028999997357764211554577502334443210000000245788888777766688885-
Q 004604 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 507 (743)
Q Consensus 429 ~l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L- 507 (743)
....++|+|+|++.+...+.. ..+
T Consensus 343 ~~~~~~IvI~Tp~~L~~~l~~-------------------------------------------------------~~~~ 367 (936)
T 4a2w_A 343 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 367 (936)
T ss_dssp HHHHCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HCCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCC
T ss_conf 416999999449999999871-------------------------------------------------------7645
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHCC--------CCCEEEEECCCCCCCHHHHH
Q ss_conf 5437129998587445772229999998400--------69299995679989989999
Q 004604 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLR--------AKRRWCLSGTPIQNSIDDLY 558 (743)
Q Consensus 508 ~~i~w~rVIlDEAH~IKN~~S~~ska~~~L~--------a~~RwlLTGTPIqNsl~DL~ 558 (743)
....|..||+||||.+.+...........+. ..++++|||||.+++..+++
T Consensus 368 ~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~ 426 (936)
T 4a2w_A 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIE 426 (936)
T ss_dssp CGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHH
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHH
T ss_conf 33678799998731359986699999999998631378867399863885545402089
No 8
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=1.00 E-value=1 Score=158.25 Aligned_cols=166 Identities=16% Similarity=0.116 Sum_probs=120.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54454215999999987020356666609981689726999999999972100221022203321012567888888876
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~~hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...|++||.+++.+++.. ..+||+++||.|||+++++++......
T Consensus 111 ~~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------------------- 155 (282)
T 1rif_A 111 RIEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLEN---------------------------- 155 (282)
T ss_dssp ECCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHH----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEECCCCCCCHHHHHHHHHHHHHC----------------------------
T ss_conf 167569999999999846-------985998079997389999999999976----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf 643211259889999987666543222478999857999582-4599999999974999998189999489988882433
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIVvP~-Sll~qW~~Ei~k~~~~~~~L~V~iy~G~~r~~~~~~l 430 (743)
..+++|||||. +++.||.+++.++.... ...+..+.++..... ...
T Consensus 156 -------------------------------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~ 202 (282)
T 1rif_A 156 -------------------------------YEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDD-KYK 202 (282)
T ss_dssp -------------------------------CSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTTCSSTT-CCC
T ss_pred -------------------------------CCCEEEEEECCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCHH-HHC
T ss_conf -------------------------------89759999797999999999999853545-632799868985022-203
Q ss_pred CCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03878994145562028999997357764211554577502334443210000000245788888777766688885543
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...+|+|+||+.+..... ....
T Consensus 203 ~~~~I~v~T~~~l~~~~~----------------------------------------------------------~~~~ 224 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQPK----------------------------------------------------------EWFS 224 (282)
T ss_dssp TTCSEEEECHHHHTTSCG----------------------------------------------------------GGGG
T ss_pred CCCCEEEECHHHHHHHHH----------------------------------------------------------HHHH
T ss_conf 588299976699875478----------------------------------------------------------7886
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 712999858744577222999999840-06929999567998998999999996188
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~S~~ska~~~L-~a~~RwlLTGTPIqNsl~DL~sLl~FL~p 566 (743)
.|..||+||||.+.+. .....+..+ .+.++++|||||. |...+++.++.+++|
T Consensus 225 ~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 225 QFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp GEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred HCCEEEEECCCCCCCC--CHHHHHHHHHCCCEEEEEECCCC-CCCHHHHHHHHHCCC
T ss_conf 3899999897037853--29999997411776999927999-850579999986178
No 9
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=1.00 E-value=1 Score=153.94 Aligned_cols=177 Identities=12% Similarity=0.082 Sum_probs=124.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44542159999999870203566666099816897269999999999721002210222033210125678888888766
Q 004604 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (743)
Q Consensus 273 ~~L~~hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (743)
..|++||.+++.|++. ++.+|+++++|+|||++++..+.......
T Consensus 12 ~~lr~~Q~~~i~~~l~-------g~~~iv~~~TGsGKTl~~~~~i~~~l~~~---------------------------- 56 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK-------GKNTIICAPTGCGKTFVSLLICEHHLKKF---------------------------- 56 (696)
T ss_dssp -CCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHHS----------------------------
T ss_pred CCCCHHHHHHHHHHHC-------CCCEEEECCCCCHHHHHHHHHHHHHHHHC----------------------------
T ss_conf 8866999999999971-------89889994999609999999999999847----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC-H-HH
Q ss_conf 43211259889999987666543222478999857999582-459999999997499999818999948998888-2-43
Q 004604 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-P-VE 429 (743)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIVvP~-Sll~qW~~Ei~k~~~~~~~L~V~iy~G~~r~~~-~-~~ 429 (743)
.....+++|||||. +|+.||.+++.++++.. .+++..++|+..... . ..
T Consensus 57 ---------------------------~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~ 108 (696)
T 2ykg_A 57 ---------------------------PQGQKGKVVFFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQI 108 (696)
T ss_dssp ---------------------------CTTCCCCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCSSSCHHHH
T ss_pred ---------------------------CCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCHHHH
T ss_conf ---------------------------56778749999788889999999999982538-82499995886654358985
Q ss_pred HCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 303878994145562028999997357764211554577502334443210000000245788888777766688885-5
Q 004604 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL-A 508 (743)
Q Consensus 430 l~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L-~ 508 (743)
....+|+|+|++.+...+.. ..+ .
T Consensus 109 ~~~~~Iiv~Tp~~L~~~l~~-------------------------------------------------------~~~~~ 133 (696)
T 2ykg_A 109 VENNDIIILTPQILVNNLKK-------------------------------------------------------GTIPS 133 (696)
T ss_dssp HHTCSEEEECHHHHHHHHHT-------------------------------------------------------TSSCC
T ss_pred CCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCCC
T ss_conf 25999999788999999860-------------------------------------------------------76664
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHC---------CCCCEEEEECCCCCC-------CHHHHHHHHHHHCCC
Q ss_conf 43712999858744577222999999840---------069299995679989-------989999999961889
Q 004604 509 KVGWFRVVLDEAQTIKNHRTQVARACCSL---------RAKRRWCLSGTPIQN-------SIDDLYSYFRFLKYD 567 (743)
Q Consensus 509 ~i~w~rVIlDEAH~IKN~~S~~ska~~~L---------~a~~RwlLTGTPIqN-------sl~DL~sLl~FL~p~ 567 (743)
...|.+||+||||.+++...........+ ...++++|||||..+ .+.+++.++..+...
T Consensus 134 l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~ 208 (696)
T 2ykg_A 134 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDAS 208 (696)
T ss_dssp GGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 031318999288754676538999999999763135777786999727656676534899999999999746984
No 10
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=1.00 E-value=1 Score=151.83 Aligned_cols=167 Identities=16% Similarity=0.118 Sum_probs=120.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54454215999999987020356666609981689726999999999972100221022203321012567888888876
Q 004604 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (743)
Q Consensus 272 ~~~L~~hQ~~gl~wml~~e~~~~~~~GGILADdMGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (743)
...|++||..++.+++.. ..+||+++||.|||++++.++......
T Consensus 111 ~~~l~~~Q~~ai~~~~~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------------------- 155 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLEN---------------------------- 155 (510)
T ss_dssp EECCCHHHHHHHHHHHHH-------SEEEEECCSTTTHHHHHHHHHHHHHHH----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCCEEEECCCCCHHHHHHHHHHHHHHC----------------------------
T ss_conf 788779999999999962-------992899189998899999999999867----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf 643211259889999987666543222478999857999582-4599999999974999998189999489988882433
Q 004604 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (743)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIVvP~-Sll~qW~~Ei~k~~~~~~~L~V~iy~G~~r~~~~~~l 430 (743)
..+++|||||. +|+.||.+++.++.... ..++..++|....... ..
T Consensus 156 -------------------------------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~ 202 (510)
T 2oca_A 156 -------------------------------YEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDDK-YK 202 (510)
T ss_dssp -------------------------------CSSEEEEEESSHHHHHHHHHHHHHTTSSC-GGGEEECGGGCCTTGG-GC
T ss_pred -------------------------------CCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCC-CC
T ss_conf -------------------------------89809999796999999999999860678-6525999668765343-46
Q ss_pred CCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03878994145562028999997357764211554577502334443210000000245788888777766688885543
Q 004604 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (743)
Q Consensus 431 ~~~DVVITTY~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (743)
...+|+|+||+.+..... ..--
T Consensus 203 ~~~~I~i~T~~~l~~~~~----------------------------------------------------------~~~~ 224 (510)
T 2oca_A 203 NDAPVVVGTWQTVVKQPK----------------------------------------------------------EWFS 224 (510)
T ss_dssp TTCSEEEEEHHHHTTSCG----------------------------------------------------------GGGG
T ss_pred CCCCEEEEEHHHHHHCHH----------------------------------------------------------HHHH
T ss_conf 688399982999741335----------------------------------------------------------5542
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 712999858744577222999999840-069299995679989989999999961889
Q 004604 511 GWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSIDDLYSYFRFLKYD 567 (743)
Q Consensus 511 ~w~rVIlDEAH~IKN~~S~~ska~~~L-~a~~RwlLTGTPIqNsl~DL~sLl~FL~p~ 567 (743)
.|..||+||+|.+.+. ...+.+..+ .+.++++||||| .+...+++++..++++.
T Consensus 225 ~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~ 279 (510)
T 2oca_A 225 QFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEI 279 (510)
T ss_dssp GEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSE
T ss_pred CCCEEEEECCCCCCCC--CHHHHHHHCCCCCEEEEEEECC-CCCCCCHHHHHHHHCCE
T ss_conf 2788999898677863--3999998610375799997079-87763187767763885
Done!