BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004605
(743 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 146/328 (44%), Gaps = 25/328 (7%)
Query: 26 GNVTYDSRSLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHEL 85
G + ++NG ++ +A IHYPR W ++ K G NTI YVFWN HE
Sbjct: 6 GTFEVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEP 65
Query: 86 SPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDT 145
G+Y F G+ ++ F ++ Q+ Y+I+R GP+V AE+ GG+P WL R
Sbjct: 66 EEGRYDFAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQD 125
Query: 146 EPFKKFMTLIVDMMKRE--KLFASQGGPIILAQVXXXXXXXXXXXXXXXKRYALWAAKMA 203
+ + + L ++ + ++ L S+GG II QV + +
Sbjct: 126 PYYXERVKLFLNEVGKQLADLQISKGGNIIXVQVENEYGAFGIDKPYISEI----RDXVK 181
Query: 204 VAQNIGVPWIMCQ-----QFDTPDPVINTCN----SFYCDQF---TPHSPSMPKIWTENW 251
A GVP C + + D ++ T N + +QF P P +E W
Sbjct: 182 QAGFTGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFW 241
Query: 252 PGWFKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPF-----IT 306
GWF +G + R +E++ + S + Y HGGT+FG G F
Sbjct: 242 SGWFDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSPTC 300
Query: 307 TSYDYEAPIDEYGLPRNPKWGHLKELHG 334
TSYDY+API+E G PK+ ++ L G
Sbjct: 301 TSYDYDAPINESG-KVTPKYLEVRNLLG 327
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 34/109 (31%)
Query: 617 MEPPKNQPLTWYKAVVKQPPGDEPIGLDMLKMGKGLAWLNGEEIGRYWPRKSRKSSPHDE 676
E +NQP + GD L+ KG W+NG IGRYW
Sbjct: 501 QENAENQPAYYRSTFNLNELGD--TFLNXXNWSKGXVWVNGHAIGRYW------------ 546
Query: 677 CVQECDYRGKFNPDKCITGCGEPSQRWYHIPRSWFKPSENILVIFEEKG 725
+ P + + ++P W K EN ++I + G
Sbjct: 547 ---------EIGPQQTL-----------YVPGCWLKKGENEIIILDXAG 575
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 129/311 (41%), Gaps = 33/311 (10%)
Query: 37 INGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRF 96
++G+ I+S AIHY R P W + K G NT+E+YV WN HE G+++F G
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 97 NLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKKFMTLIV 156
+L KF++I Q +Y I+R PF+ AE+ +GG+P WL R+ + + +
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEAVGRYY 130
Query: 157 DM--MKREKLFASQGGPIILAQVXXXXXXXXXXXXXXXKRYAL----------------W 198
D + GG I++ QV L W
Sbjct: 131 DQLLPRLVPRLLDNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPLFTSDGPW 190
Query: 199 AAKMAVAQNIGVPWIMCQQFDTPDPV-INTCNSFYCDQFTPHSPSMPKIWTENWPGWFKT 257
A + I + F + P + F F H P + E W GWF
Sbjct: 191 RATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEF----FDEHGKKWPLMCMEFWDGWFNR 246
Query: 258 FGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPF-------ITTSYD 310
+ R +++A +V ++G N YM+HGGTNFG G TSYD
Sbjct: 247 WKEPIITRDPKELADAVREVLEQGSI--NLYMFHGGTNFGFMNGCSARGTLDLPQVTSYD 304
Query: 311 YEAPIDEYGLP 321
Y+A +DE G P
Sbjct: 305 YDALLDEEGNP 315
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 628 YKAVVKQPPGDEPIGLDMLKMGKGLAWLNGEEIGRYW 664
Y V++P + LD+ + GKG+A++NG+ +GR+W
Sbjct: 511 YDFTVEEP---KDTYLDLSEFGKGVAFVNGQNLGRFW 544
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 135/311 (43%), Gaps = 22/311 (7%)
Query: 28 VTYDSRSLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSP 87
+ Y S + +G+ IS +IHY R W + + K G+N I++YV WN HE P
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 88 GKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEP 147
G+Y F ++ F+++ + + +ILR GP++ AE+ GG+P WL + R+
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 148 F----KKFMTLIVDMMKREKLFASQGGPIILAQVXXXXXXXXX----XXXXXXKRYALWA 199
+ K++ +++ MK L GGP+I QV KR+
Sbjct: 131 YLAAVDKWLGVLLPKMK--PLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHL 188
Query: 200 AKMAV---AQNIGVPWIMCQQFDTPDPVIN-TCNSFYCDQFTPH---SPSMPKIWTENWP 252
V ++ C ++ S D F P P I +E +
Sbjct: 189 GDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYT 248
Query: 253 GWFKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFG--RTAGGPFIT--TS 308
GW +G +E +A S+ +G SV N YM+ GGTNF A P+ TS
Sbjct: 249 GWLDHWGQPHSTIKTEAVASSLYDILARGASV-NLYMFIGGTNFAYWNGANSPYAAQPTS 307
Query: 309 YDYEAPIDEYG 319
YDY+AP+ E G
Sbjct: 308 YDYDAPLSEAG 318
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 650 KGLAWLNGEEIGRYWPRK 667
KG W+NG +GRYWP +
Sbjct: 555 KGQVWINGFNLGRYWPAR 572
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 151/377 (40%), Gaps = 50/377 (13%)
Query: 28 VTYDSRSLIINGRRELIISAAIH-YPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELS 86
VT+D SL ++G R +I S +H + VP ++ + + K G NT+ YV W E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 87 PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTE 146
PG++ G F+L F + +A +Y++ R GP++ AE + GG P WL + G + R D
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGKL-RTDAP 144
Query: 147 PF----KKFMTLIVDMMKREKLFASQGGPIILAQVXXXXXXXXXXXXXXXKRYALWAAKM 202
+ ++ I ++ + ++ + GGP+IL Q K Y +
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 203 AVAQNIGVPWIMCQQFDTPD------------------PVINTCN--SFYCDQFTPH--- 239
A I VP I F P+ C S + D P
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 240 ------SPSMPKIWTENWPGWFKTFGGRDPHRPSEDIAFSVARFFQK-----GGSVHNYY 288
SPS P E G F FGG + S + R F K G ++ N Y
Sbjct: 263 QDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIY 322
Query: 289 MYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKLCEHALLNGER 348
M GGTN+G G P TSYDY A I E K+ LK L G +
Sbjct: 323 MTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELK-LQGQFLKVSPGYITATP 380
Query: 349 SNLSLGSSQEADVYADS 365
N + G VY+DS
Sbjct: 381 ENATQG------VYSDS 391
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 142/357 (39%), Gaps = 44/357 (12%)
Query: 28 VTYDSRSLIINGRRELIISAAIH-YPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELS 86
VT+D S+ +NG R +I S +H Y V ++ + ++ K G N + YV W E +
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 87 PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTE 146
PG Y G F+L F ++A +Y++ R GP++ AE + GG P WL + G + R E
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDG-ILRTSDE 124
Query: 147 PFKK----FMTLIVDMMKREKLFASQGGPIILAQVXXXXXXXXXXXXXXXK-RYALWAAK 201
+ K + + I + + ++ + GGPIIL Q Y +
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 202 MAVAQNIGVPWIMCQQ--------------------------FDTPDPVI---NTCNSFY 232
A I VP+I FD +P +++
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 233 CDQFTPHSPSMPKIWTENWPGWFKTFGGRDPHRPSEDIAFSVARFFQK-----GGSVHNY 287
SPS P E G F +GG + + + R F K G + N
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNL 302
Query: 288 YMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKLCEHALL 344
YM GGTN+G G P TSYDY + I E K+ LK L K+ L+
Sbjct: 303 YMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLV 358
>pdb|2J6L|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|C Chain C, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|D Chain D, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|E Chain E, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|F Chain F, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|G Chain G, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|H Chain H, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
Length = 500
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 587 YSWTYKIGLQGEHLGIYNPGYRNNINWVSTMEPPKNQPLT 626
Y+W ++GL+ E+ G+YN + ++T P N+P+
Sbjct: 12 YAWLKELGLREENEGVYNGSWGGRGEVITTYCPANNEPIA 51
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 249 ENWPGW--FKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFIT 306
E+ PG F G P ++D AF F ++ SV +Y+ YHGG G+ G F
Sbjct: 421 EDLPGVEGFNILGIPLPKDQTDDAAFET--FCRE--SVASYWHYHGGCLVGKVLDGDFRV 476
Query: 307 TSYDYEAPIDEYGLPRNP 324
T + +D P P
Sbjct: 477 TGINALRVVDGSTFPYTP 494
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 249 ENWPGW--FKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFIT 306
E+ PG F G P ++D AF F ++ SV +Y+ YHGG G+ G F
Sbjct: 421 EDLPGVEGFNILGIPLPKDQTDDAAFET--FCRE--SVASYWHYHGGCLVGKVLDGDFRV 476
Query: 307 TSYDYEAPIDEYGLPRNP 324
T + +D P P
Sbjct: 477 TGINALRVVDGSTFPYTP 494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,998,575
Number of Sequences: 62578
Number of extensions: 1149982
Number of successful extensions: 2246
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2219
Number of HSP's gapped (non-prelim): 21
length of query: 743
length of database: 14,973,337
effective HSP length: 106
effective length of query: 637
effective length of database: 8,340,069
effective search space: 5312623953
effective search space used: 5312623953
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)