Query 004605
Match_columns 743
No_of_seqs 241 out of 1503
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:05:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 3E-188 6E-193 1618.1 64.6 711 12-740 14-730 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 6E-149 1E-153 1245.6 41.3 616 25-739 17-640 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.3E-86 2.9E-91 716.8 17.8 293 34-335 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 1.9E-37 4.1E-42 356.8 12.8 289 28-321 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 1E-20 2.2E-25 209.1 13.4 265 49-338 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 4E-13 8.7E-18 144.2 18.3 192 28-257 1-213 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 3.5E-11 7.5E-16 141.4 24.0 158 26-215 276-448 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.3 3.1E-11 6.8E-16 148.8 18.2 258 26-337 318-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.3 7.4E-11 1.6E-15 145.3 18.0 147 27-215 335-488 (1027)
10 COG3250 LacZ Beta-galactosidas 99.1 1.4E-09 3E-14 130.1 15.3 119 26-183 284-409 (808)
11 PF13364 BetaGal_dom4_5: Beta- 99.0 6.5E-10 1.4E-14 103.0 7.0 68 623-721 34-104 (111)
12 PF00150 Cellulase: Cellulase 98.8 8.9E-08 1.9E-12 100.5 14.3 162 37-216 3-172 (281)
13 PF13364 BetaGal_dom4_5: Beta- 98.7 1.1E-07 2.3E-12 88.3 9.1 84 465-555 24-110 (111)
14 PF02837 Glyco_hydro_2_N: Glyc 98.1 2.2E-05 4.7E-10 77.0 11.7 99 471-575 63-164 (167)
15 PF03198 Glyco_hydro_72: Gluca 97.9 0.00015 3.3E-09 78.1 12.8 152 26-212 9-179 (314)
16 PLN02801 beta-amylase 97.6 0.00018 3.9E-09 81.4 9.3 113 55-177 35-183 (517)
17 TIGR03356 BGL beta-galactosida 97.6 7.2E-05 1.6E-09 84.9 5.7 96 57-160 54-150 (427)
18 PLN00197 beta-amylase; Provisi 97.5 0.00058 1.3E-08 77.9 11.9 112 55-177 125-272 (573)
19 smart00633 Glyco_10 Glycosyl h 97.5 0.00014 3.1E-09 76.7 6.7 115 80-216 3-125 (254)
20 PLN02803 beta-amylase 97.5 0.00028 6.1E-09 80.2 9.0 111 56-177 106-252 (548)
21 PLN02705 beta-amylase 97.5 0.00031 6.8E-09 80.6 8.9 113 55-177 266-414 (681)
22 PLN02161 beta-amylase 97.5 0.00047 1E-08 78.1 9.9 112 55-177 115-262 (531)
23 PLN02905 beta-amylase 97.4 0.00044 9.5E-09 79.7 9.1 112 56-177 285-432 (702)
24 PF13204 DUF4038: Protein of u 97.4 0.002 4.4E-08 69.5 13.3 225 32-282 2-274 (289)
25 PF01373 Glyco_hydro_14: Glyco 97.0 0.00058 1.3E-08 76.0 4.7 110 58-177 17-152 (402)
26 PF14488 DUF4434: Domain of un 97.0 0.0061 1.3E-07 60.7 11.2 136 52-214 15-159 (166)
27 PRK10150 beta-D-glucuronidase; 96.7 0.0089 1.9E-07 70.9 11.6 75 473-553 62-137 (604)
28 PF02837 Glyco_hydro_2_N: Glyc 96.7 0.0022 4.7E-08 62.8 5.0 67 622-721 66-136 (167)
29 PF00232 Glyco_hydro_1: Glycos 96.7 0.0011 2.4E-08 75.9 3.3 97 57-161 58-156 (455)
30 COG2730 BglC Endoglucanase [Ca 96.3 0.016 3.5E-07 65.6 9.7 118 55-182 66-192 (407)
31 PRK15014 6-phospho-beta-glucos 96.3 0.0063 1.4E-07 70.2 6.1 96 57-160 69-167 (477)
32 PRK09852 cryptic 6-phospho-bet 96.1 0.0067 1.5E-07 69.9 5.6 96 57-160 71-169 (474)
33 PF07745 Glyco_hydro_53: Glyco 96.0 0.02 4.3E-07 63.1 8.2 104 60-182 27-136 (332)
34 TIGR01233 lacG 6-phospho-beta- 96.0 0.011 2.4E-07 68.1 6.4 96 57-160 53-149 (467)
35 PRK13511 6-phospho-beta-galact 96.0 0.011 2.3E-07 68.3 6.2 96 57-160 54-150 (469)
36 PRK09525 lacZ beta-D-galactosi 96.0 0.039 8.4E-07 69.3 11.5 92 476-576 120-217 (1027)
37 PRK10340 ebgA cryptic beta-D-g 96.0 0.029 6.2E-07 70.5 10.3 93 476-577 109-206 (1021)
38 PRK09593 arb 6-phospho-beta-gl 95.9 0.014 3E-07 67.4 6.5 97 57-161 73-172 (478)
39 PLN02998 beta-glucosidase 95.8 0.011 2.5E-07 68.4 5.7 96 57-160 82-179 (497)
40 PF00331 Glyco_hydro_10: Glyco 95.7 0.014 3E-07 64.0 5.5 156 44-217 11-179 (320)
41 PRK09589 celA 6-phospho-beta-g 95.7 0.016 3.5E-07 66.8 6.1 97 57-161 67-166 (476)
42 PLN02814 beta-glucosidase 95.6 0.016 3.5E-07 67.3 5.9 96 57-160 77-174 (504)
43 PLN02849 beta-glucosidase 95.3 0.027 5.9E-07 65.4 6.2 97 57-161 79-177 (503)
44 PF14871 GHL6: Hypothetical gl 94.5 0.22 4.8E-06 47.8 9.1 95 61-160 4-120 (132)
45 COG3867 Arabinogalactan endo-1 94.4 0.4 8.6E-06 51.6 11.4 121 57-190 63-191 (403)
46 COG2723 BglB Beta-glucosidase/ 94.2 0.073 1.6E-06 60.7 5.9 96 57-160 59-157 (460)
47 COG3693 XynA Beta-1,4-xylanase 93.8 0.34 7.4E-06 52.8 9.7 127 71-217 58-194 (345)
48 KOG2230 Predicted beta-mannosi 91.5 2.1 4.5E-05 49.8 12.3 148 33-217 328-494 (867)
49 smart00642 Aamy Alpha-amylase 91.4 0.5 1.1E-05 47.0 6.7 65 59-123 21-97 (166)
50 smart00812 Alpha_L_fucos Alpha 91.3 20 0.00043 40.6 20.0 248 51-347 78-341 (384)
51 PRK09936 hypothetical protein; 90.5 0.42 9.1E-06 51.5 5.4 58 53-116 34-92 (296)
52 TIGR01515 branching_enzym alph 89.5 5.1 0.00011 48.0 14.1 165 47-214 142-347 (613)
53 PF02638 DUF187: Glycosyl hydr 89.3 0.69 1.5E-05 50.6 6.2 114 55-179 17-162 (311)
54 PF02055 Glyco_hydro_30: O-Gly 88.9 1.9 4E-05 50.4 9.6 332 40-398 74-490 (496)
55 PF05913 DUF871: Bacterial pro 86.6 0.75 1.6E-05 51.4 4.4 70 45-120 2-71 (357)
56 PRK09441 cytoplasmic alpha-amy 84.9 1.4 3.1E-05 50.9 5.9 61 56-116 18-101 (479)
57 PRK12568 glycogen branching en 84.8 13 0.00027 45.5 13.7 54 62-118 275-341 (730)
58 PRK14706 glycogen branching en 84.4 15 0.00033 44.3 14.2 144 64-214 175-356 (639)
59 TIGR00542 hxl6Piso_put hexulos 83.5 18 0.00038 38.5 13.0 59 56-117 15-74 (279)
60 PF00128 Alpha-amylase: Alpha 81.9 1.6 3.4E-05 46.0 4.2 58 60-117 7-73 (316)
61 PF14307 Glyco_tran_WbsX: Glyc 81.8 11 0.00025 41.7 11.1 136 54-215 55-196 (345)
62 PRK12313 glycogen branching en 80.7 3 6.6E-05 50.1 6.5 51 63-116 177-240 (633)
63 COG3934 Endo-beta-mannanase [C 80.7 1.3 2.9E-05 50.6 3.2 155 34-204 3-168 (587)
64 PLN02447 1,4-alpha-glucan-bran 79.9 2.6 5.6E-05 51.5 5.5 62 57-118 251-322 (758)
65 TIGR02403 trehalose_treC alpha 79.6 2.7 5.9E-05 49.5 5.5 58 59-116 29-95 (543)
66 TIGR02402 trehalose_TreZ malto 76.9 3.9 8.5E-05 48.2 5.8 53 61-116 115-180 (542)
67 PRK05402 glycogen branching en 76.6 4.8 0.0001 49.2 6.6 50 64-116 273-335 (726)
68 COG0296 GlgB 1,4-alpha-glucan 76.4 4.6 9.9E-05 48.3 6.1 53 60-115 168-233 (628)
69 cd00019 AP2Ec AP endonuclease 75.2 21 0.00046 37.8 10.4 54 57-114 10-64 (279)
70 PRK10933 trehalose-6-phosphate 74.8 5.9 0.00013 46.9 6.5 55 59-116 35-101 (551)
71 PLN02960 alpha-amylase 74.3 6 0.00013 48.9 6.5 56 61-116 421-486 (897)
72 PF06832 BiPBP_C: Penicillin-B 73.9 5.7 0.00012 35.1 4.7 50 499-556 34-84 (89)
73 PF13199 Glyco_hydro_66: Glyco 73.5 5.6 0.00012 47.1 5.8 78 57-134 118-210 (559)
74 TIGR02456 treS_nterm trehalose 73.3 4.8 0.0001 47.4 5.2 57 59-115 30-95 (539)
75 PRK13398 3-deoxy-7-phosphohept 72.3 11 0.00025 40.4 7.4 80 27-116 15-98 (266)
76 COG3589 Uncharacterized conser 72.0 7.5 0.00016 42.9 5.9 72 45-123 4-76 (360)
77 TIGR02104 pulA_typeI pullulana 71.7 6.9 0.00015 46.8 6.2 55 61-116 168-249 (605)
78 TIGR02631 xylA_Arthro xylose i 70.7 65 0.0014 36.5 13.3 52 55-113 30-85 (382)
79 cd04908 ACT_Bt0572_1 N-termina 70.6 15 0.00033 30.2 6.3 55 56-114 12-66 (66)
80 PRK10785 maltodextrin glucosid 70.2 8.9 0.00019 45.8 6.6 57 60-116 182-246 (598)
81 KOG2024 Beta-Glucuronidase GUS 70.1 9 0.0002 41.0 5.8 63 461-524 70-135 (297)
82 PRK09505 malS alpha-amylase; R 68.2 11 0.00023 46.0 6.7 59 59-117 232-313 (683)
83 PF08308 PEGA: PEGA domain; I 68.1 6.2 0.00014 33.1 3.5 46 500-557 3-48 (71)
84 COG1649 Uncharacterized protei 68.1 29 0.00062 39.8 9.6 119 55-182 62-210 (418)
85 PF01791 DeoC: DeoC/LacD famil 65.9 2.2 4.8E-05 44.5 0.4 54 60-116 79-132 (236)
86 PF02679 ComA: (2R)-phospho-3- 65.7 9.7 0.00021 40.4 5.1 52 56-117 83-134 (244)
87 cd06593 GH31_xylosidase_YicI Y 65.5 11 0.00024 40.9 5.8 67 55-121 22-91 (308)
88 PF14683 CBM-like: Polysacchar 65.3 5.8 0.00013 39.7 3.2 64 647-726 91-154 (167)
89 PRK14510 putative bifunctional 64.7 9.8 0.00021 49.2 5.8 56 61-116 191-267 (1221)
90 PLN02361 alpha-amylase 64.5 15 0.00032 41.9 6.6 57 60-116 32-96 (401)
91 TIGR02401 trehalose_TreY malto 63.7 14 0.0003 45.8 6.5 62 57-118 16-87 (825)
92 PF13200 DUF4015: Putative gly 63.7 11 0.00024 41.5 5.2 62 55-116 11-81 (316)
93 PF03659 Glyco_hydro_71: Glyco 61.4 17 0.00036 41.3 6.3 54 54-116 14-67 (386)
94 PF01261 AP_endonuc_2: Xylose 61.4 18 0.00039 35.7 6.0 45 63-114 1-45 (213)
95 TIGR03849 arch_ComA phosphosul 61.1 16 0.00035 38.7 5.6 53 56-118 70-122 (237)
96 PRK14705 glycogen branching en 60.5 15 0.00033 47.3 6.4 51 63-116 772-835 (1224)
97 PRK14511 maltooligosyl trehalo 59.8 18 0.00039 45.1 6.5 59 56-118 19-91 (879)
98 PRK03705 glycogen debranching 59.1 15 0.00033 44.4 5.8 55 62-116 184-262 (658)
99 PF01229 Glyco_hydro_39: Glyco 58.0 20 0.00044 41.7 6.4 68 47-117 29-105 (486)
100 PRK08673 3-deoxy-7-phosphohept 54.7 30 0.00064 38.6 6.7 77 33-116 85-164 (335)
101 PF11324 DUF3126: Protein of u 54.4 22 0.00047 30.1 4.2 29 505-533 25-53 (63)
102 PRK01060 endonuclease IV; Prov 54.3 60 0.0013 34.3 8.9 50 59-112 14-63 (281)
103 PF02065 Melibiase: Melibiase; 52.9 63 0.0014 36.8 9.1 114 49-162 50-182 (394)
104 smart00481 POLIIIAc DNA polyme 52.7 39 0.00084 27.9 5.6 46 57-115 15-60 (67)
105 KOG0496 Beta-galactosidase [Ca 52.1 7.2 0.00016 46.4 1.4 28 305-332 325-352 (649)
106 cd06592 GH31_glucosidase_KIAA1 52.0 30 0.00066 37.6 6.2 68 52-122 25-96 (303)
107 PRK13210 putative L-xylulose 5 51.7 21 0.00045 37.7 4.8 54 57-113 16-69 (284)
108 PRK00042 tpiA triosephosphate 51.0 26 0.00056 37.4 5.3 48 63-117 79-127 (250)
109 PLN00196 alpha-amylase; Provis 50.7 35 0.00075 39.3 6.7 57 60-116 47-112 (428)
110 TIGR03234 OH-pyruv-isom hydrox 50.6 28 0.00062 36.3 5.6 43 58-114 15-57 (254)
111 TIGR00419 tim triosephosphate 50.6 31 0.00066 35.8 5.6 44 63-116 74-117 (205)
112 PRK14507 putative bifunctional 50.5 30 0.00065 46.1 6.7 61 55-118 756-829 (1693)
113 TIGR02100 glgX_debranch glycog 50.1 24 0.00052 43.0 5.5 55 62-116 189-265 (688)
114 PF08531 Bac_rhamnosid_N: Alph 50.1 14 0.00029 37.0 2.9 23 642-664 7-29 (172)
115 PF08531 Bac_rhamnosid_N: Alph 49.7 59 0.0013 32.4 7.4 56 499-555 6-68 (172)
116 TIGR00677 fadh2_euk methylenet 49.5 53 0.0012 35.6 7.5 104 43-160 130-250 (281)
117 PF14587 Glyco_hydr_30_2: O-Gl 49.3 1E+02 0.0023 35.0 9.8 135 67-216 57-226 (384)
118 cd06547 GH85_ENGase Endo-beta- 48.6 46 0.00099 37.1 7.0 115 73-214 32-148 (339)
119 COG1306 Uncharacterized conser 47.5 35 0.00076 37.3 5.5 59 55-116 75-144 (400)
120 COG3623 SgaU Putative L-xylulo 47.4 22 0.00049 37.5 4.0 52 55-111 16-69 (287)
121 TIGR02102 pullulan_Gpos pullul 46.9 31 0.00068 44.2 5.9 21 96-116 555-575 (1111)
122 KOG3833 Uncharacterized conser 46.7 19 0.00041 39.5 3.4 53 58-116 444-499 (505)
123 cd00311 TIM Triosephosphate is 46.0 42 0.00091 35.6 5.9 49 63-117 77-125 (242)
124 KOG0259 Tyrosine aminotransfer 46.0 28 0.00061 39.3 4.7 96 13-114 140-237 (447)
125 cd06591 GH31_xylosidase_XylS X 45.8 33 0.00072 37.6 5.4 66 55-121 22-91 (319)
126 PF12876 Cellulase-like: Sugar 45.4 28 0.0006 30.7 3.8 49 166-214 5-62 (88)
127 TIGR01531 glyc_debranch glycog 44.6 34 0.00074 44.6 5.7 83 34-116 104-205 (1464)
128 cd06589 GH31 The enzymes of gl 44.3 35 0.00076 36.3 5.1 65 55-120 22-90 (265)
129 cd06598 GH31_transferase_CtsZ 43.8 40 0.00088 36.9 5.6 67 55-121 22-95 (317)
130 PRK12677 xylose isomerase; Pro 43.5 1.4E+02 0.003 33.9 9.9 55 56-116 30-88 (384)
131 cd06602 GH31_MGAM_SI_GAA This 41.6 40 0.00088 37.4 5.2 73 49-122 13-92 (339)
132 COG0149 TpiA Triosephosphate i 41.1 55 0.0012 35.0 5.9 48 63-117 81-129 (251)
133 cd06599 GH31_glycosidase_Aec37 40.9 53 0.0012 36.0 6.0 65 57-121 29-98 (317)
134 PF10566 Glyco_hydro_97: Glyco 40.7 1.1E+02 0.0024 33.1 8.2 112 55-173 30-160 (273)
135 cd06603 GH31_GANC_GANAB_alpha 40.4 43 0.00093 37.1 5.2 73 49-122 13-90 (339)
136 cd06600 GH31_MGAM-like This fa 39.8 43 0.00094 36.7 5.1 72 49-121 13-89 (317)
137 PRK14565 triosephosphate isome 39.0 53 0.0011 34.9 5.3 48 63-117 78-126 (237)
138 PLN03059 beta-galactosidase; P 38.5 1E+02 0.0022 38.4 8.3 42 623-665 469-518 (840)
139 COG0156 BioF 7-keto-8-aminopel 38.2 18 0.00038 41.1 1.7 100 4-115 101-207 (388)
140 cd06416 GH25_Lys1-like Lys-1 i 38.1 63 0.0014 32.6 5.6 89 45-136 54-157 (196)
141 COG0366 AmyA Glycosidases [Car 38.1 43 0.00092 38.2 4.9 56 61-116 33-97 (505)
142 cd06601 GH31_lyase_GLase GLase 37.9 1.3E+02 0.0027 33.5 8.3 72 49-121 13-89 (332)
143 PRK09989 hypothetical protein; 37.7 62 0.0013 34.0 5.7 43 58-114 16-58 (258)
144 PF07691 PA14: PA14 domain; I 37.3 1.6E+02 0.0035 27.5 8.0 71 477-555 47-123 (145)
145 PRK12858 tagatose 1,6-diphosph 36.8 34 0.00073 38.2 3.6 62 53-116 102-163 (340)
146 COG5520 O-Glycosyl hydrolase [ 36.8 62 0.0013 36.3 5.5 85 105-206 111-205 (433)
147 PLN02784 alpha-amylase 36.1 54 0.0012 40.9 5.4 57 60-116 524-588 (894)
148 PRK14566 triosephosphate isome 35.8 76 0.0016 34.2 5.9 48 63-117 88-136 (260)
149 PLN02429 triosephosphate isome 35.6 61 0.0013 35.8 5.3 48 63-117 140-188 (315)
150 PRK14582 pgaB outer membrane N 35.5 1.8E+02 0.0038 35.6 9.6 109 57-180 334-467 (671)
151 cd06565 GH20_GcnA-like Glycosy 35.3 61 0.0013 35.3 5.3 103 55-161 15-128 (301)
152 TIGR02455 TreS_stutzeri trehal 35.3 91 0.002 37.8 7.0 76 55-134 76-176 (688)
153 PTZ00333 triosephosphate isome 34.9 81 0.0017 33.8 6.0 48 63-117 82-130 (255)
154 PRK09997 hydroxypyruvate isome 34.7 62 0.0013 33.9 5.1 42 59-114 17-58 (258)
155 smart00518 AP2Ec AP endonuclea 34.4 2E+02 0.0044 30.1 9.0 51 59-114 12-63 (273)
156 PRK09856 fructoselysine 3-epim 34.2 44 0.00096 35.2 3.9 58 58-119 91-153 (275)
157 PLN02877 alpha-amylase/limit d 34.1 70 0.0015 40.5 6.1 21 96-116 466-486 (970)
158 PF02228 Gag_p19: Major core p 33.9 16 0.00035 32.0 0.4 37 55-108 20-56 (92)
159 cd06595 GH31_xylosidase_XylS-l 33.8 80 0.0017 34.2 5.9 66 55-120 23-98 (292)
160 TIGR02103 pullul_strch alpha-1 33.7 65 0.0014 40.5 5.7 21 96-116 404-424 (898)
161 PRK05265 pyridoxine 5'-phospha 33.4 63 0.0014 34.3 4.7 48 57-122 113-161 (239)
162 cd06604 GH31_glucosidase_II_Ma 33.2 67 0.0014 35.5 5.3 72 49-121 13-89 (339)
163 cd06545 GH18_3CO4_chitinase Th 32.9 2E+02 0.0044 30.2 8.7 91 66-182 18-110 (253)
164 PF01261 AP_endonuc_2: Xylose 32.8 40 0.00086 33.2 3.1 63 57-119 71-135 (213)
165 cd04882 ACT_Bt0572_2 C-termina 32.1 93 0.002 24.7 4.7 55 56-112 10-64 (65)
166 cd06597 GH31_transferase_CtsY 31.9 81 0.0018 35.0 5.7 73 49-121 13-110 (340)
167 PRK13209 L-xylulose 5-phosphat 31.6 75 0.0016 33.6 5.2 54 57-113 21-74 (283)
168 PF03644 Glyco_hydro_85: Glyco 31.5 52 0.0011 36.2 4.0 114 72-213 27-142 (311)
169 PF04914 DltD_C: DltD C-termin 31.0 40 0.00087 32.4 2.7 51 96-161 36-87 (130)
170 KOG4039 Serine/threonine kinas 30.4 58 0.0013 33.4 3.7 68 51-122 103-172 (238)
171 cd02742 GH20_hexosaminidase Be 30.4 81 0.0017 34.4 5.3 143 55-208 14-185 (303)
172 PRK12331 oxaloacetate decarbox 30.4 1.1E+02 0.0024 35.5 6.5 56 49-116 88-143 (448)
173 PRK15492 triosephosphate isome 30.3 1E+02 0.0022 33.1 5.9 49 63-117 87-135 (260)
174 TIGR00433 bioB biotin syntheta 29.9 74 0.0016 34.0 4.8 51 60-113 123-175 (296)
175 PRK09856 fructoselysine 3-epim 29.8 1.2E+02 0.0025 32.0 6.2 53 57-114 13-65 (275)
176 KOG0470 1,4-alpha-glucan branc 29.7 50 0.0011 40.2 3.6 57 60-116 258-331 (757)
177 PF00121 TIM: Triosephosphate 29.7 54 0.0012 34.9 3.6 48 63-117 77-125 (244)
178 COG1523 PulA Type II secretory 29.5 81 0.0017 38.6 5.4 54 63-116 206-285 (697)
179 COG1891 Uncharacterized protei 29.5 18 0.0004 36.5 0.1 65 43-115 117-186 (235)
180 PF07755 DUF1611: Protein of u 29.1 34 0.00074 37.5 2.1 115 42-217 35-151 (301)
181 PLN02561 triosephosphate isome 29.0 1.1E+02 0.0025 32.7 5.9 48 63-117 81-129 (253)
182 PF01055 Glyco_hydro_31: Glyco 28.9 1E+02 0.0022 35.2 5.9 69 55-124 41-111 (441)
183 cd01299 Met_dep_hydrolase_A Me 28.5 93 0.002 33.8 5.4 61 55-116 118-180 (342)
184 PRK14567 triosephosphate isome 28.4 1.2E+02 0.0026 32.5 5.9 49 63-117 78-126 (253)
185 PRK13210 putative L-xylulose 5 28.3 69 0.0015 33.7 4.2 60 57-117 94-154 (284)
186 PRK09997 hydroxypyruvate isome 27.8 66 0.0014 33.7 3.9 59 58-116 86-144 (258)
187 COG2179 Predicted hydrolase of 27.0 1.2E+02 0.0026 30.7 5.2 44 63-115 20-68 (175)
188 TIGR00676 fadh2 5,10-methylene 26.2 1.4E+02 0.003 32.0 6.1 81 42-135 125-218 (272)
189 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.2 1.5E+02 0.0032 31.9 6.3 50 54-115 88-137 (275)
190 PLN03036 glutamine synthetase; 26.2 1.7E+02 0.0037 33.8 7.1 63 60-128 233-307 (432)
191 PRK04302 triosephosphate isome 25.7 1.2E+02 0.0026 31.4 5.3 60 49-118 62-123 (223)
192 PRK09432 metF 5,10-methylenete 25.0 74 0.0016 34.8 3.7 61 62-135 168-237 (296)
193 COG2884 FtsE Predicted ATPase 24.9 53 0.0012 34.1 2.4 31 635-665 36-71 (223)
194 PF12733 Cadherin-like: Cadher 24.9 1.5E+02 0.0033 25.6 5.1 44 500-552 28-72 (88)
195 TIGR01698 PUNP purine nucleoti 24.8 95 0.0021 32.9 4.4 55 36-90 47-104 (237)
196 TIGR03234 OH-pyruv-isom hydrox 24.5 78 0.0017 33.0 3.7 59 57-116 84-143 (254)
197 TIGR01361 DAHP_synth_Bsub phos 23.8 1.3E+02 0.0028 32.2 5.3 81 27-116 13-96 (260)
198 KOG0683 Glutamine synthetase [ 23.7 1E+02 0.0022 34.7 4.4 44 84-128 203-258 (380)
199 COG5309 Exo-beta-1,3-glucanase 23.6 4.7E+02 0.01 28.6 9.1 120 55-218 61-180 (305)
200 KOG0626 Beta-glucosidase, lact 23.3 1.2E+02 0.0026 35.8 5.1 59 58-116 92-153 (524)
201 cd04883 ACT_AcuB C-terminal AC 23.2 2.7E+02 0.0059 22.6 6.1 56 57-113 13-69 (72)
202 cd06415 GH25_Cpl1-like Cpl-1 l 22.7 3.6E+02 0.0078 27.2 8.0 43 96-138 108-157 (196)
203 PF05763 DUF835: Protein of un 22.5 5.8E+02 0.013 24.7 9.0 104 88-209 1-113 (136)
204 cd06564 GH20_DspB_LnbB-like Gl 22.5 1.6E+02 0.0035 32.3 5.9 139 55-209 15-195 (326)
205 PLN02389 biotin synthase 22.1 1.1E+02 0.0024 34.7 4.5 47 58-112 176-229 (379)
206 PRK09860 putative alcohol dehy 22.0 2.2E+02 0.0047 32.1 6.9 65 40-117 32-96 (383)
207 cd00003 PNPsynthase Pyridoxine 21.8 1.2E+02 0.0027 32.1 4.4 48 57-122 110-158 (234)
208 PRK06852 aldolase; Validated 21.8 2.2E+02 0.0047 31.4 6.5 79 57-159 116-200 (304)
209 PRK08645 bifunctional homocyst 21.7 1.1E+02 0.0024 36.8 4.8 85 38-135 459-551 (612)
210 PRK14040 oxaloacetate decarbox 21.5 1.4E+02 0.003 35.9 5.4 54 49-114 89-142 (593)
211 PF02811 PHP: PHP domain; Int 21.4 1.8E+02 0.0038 27.8 5.3 47 57-116 16-62 (175)
212 cd04886 ACT_ThrD-II-like C-ter 21.4 4.1E+02 0.0089 20.9 7.4 59 55-113 8-72 (73)
213 PLN02231 alanine transaminase 21.3 2.2E+02 0.0047 33.7 7.0 59 53-115 252-310 (534)
214 PF00120 Gln-synt_C: Glutamine 21.2 1.8E+02 0.0039 30.8 5.7 60 56-120 68-139 (259)
215 cd08560 GDPD_EcGlpQ_like_1 Gly 21.2 1.3E+02 0.0028 33.9 4.8 53 58-116 246-298 (356)
216 PF07071 DUF1341: Protein of u 21.1 2.1E+02 0.0046 29.8 5.8 43 59-116 137-182 (218)
217 PRK05660 HemN family oxidoredu 21.0 1E+02 0.0022 34.6 4.0 50 59-112 106-159 (378)
218 TIGR00539 hemN_rel putative ox 20.9 1.1E+02 0.0024 34.1 4.2 48 60-111 100-151 (360)
219 PF14307 Glyco_tran_WbsX: Glyc 20.8 1.2E+02 0.0026 33.7 4.5 43 31-76 150-194 (345)
220 PRK09250 fructose-bisphosphate 20.8 1.1E+02 0.0024 34.3 4.0 48 63-116 152-199 (348)
221 PF13380 CoA_binding_2: CoA bi 20.7 1.4E+02 0.0031 27.7 4.2 70 28-113 31-106 (116)
222 COG1735 Php Predicted metal-de 20.6 3.1E+02 0.0068 30.3 7.3 58 61-135 52-109 (316)
223 cd06594 GH31_glucosidase_YihQ 20.5 3E+02 0.0064 30.3 7.4 68 55-122 21-97 (317)
224 COG2100 Predicted Fe-S oxidore 20.0 6.4E+02 0.014 28.4 9.4 115 60-214 204-335 (414)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=2.5e-188 Score=1618.13 Aligned_cols=711 Identities=55% Similarity=1.048 Sum_probs=658.5
Q ss_pred HHHHHhhhcccccceeEEEeCCcEEECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeee
Q 004605 12 LLIFFSSSITYCFAGNVTYDSRSLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYY 91 (743)
Q Consensus 12 ~~~~~~~~~~~~~~~~v~~d~~~f~~dGkp~~l~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~d 91 (743)
+|...||+|++....+|++|+++|+|||||++|+||||||||+||++|+|+|+||||||+|||+||||||+|||+||+||
T Consensus 14 ~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~d 93 (840)
T PLN03059 14 LLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYY 93 (840)
T ss_pred HHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeee
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHH----HHHHHHHHHHhcccccc
Q 004605 92 FGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK----FMTLIVDMMKREKLFAS 167 (743)
Q Consensus 92 F~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~----~~~~i~~~l~~~~~~~~ 167 (743)
|+|++||++||++|||+||+|||||||||||||++||+|.||+++|+|++||+|++|++ |+++|+++|++++++++
T Consensus 94 F~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~ 173 (840)
T PLN03059 94 FEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEP 173 (840)
T ss_pred ccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeec
Confidence 99999999999999999999999999999999999999999999999999999999998 99999999987799999
Q ss_pred CCCcEEEecccccccccccccCcccHHHHHHHHHHHHhcCCccceEEecccCCCccccccCCCCccCccCCCCCCCCcee
Q 004605 168 QGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMCQQFDTPDPVINTCNSFYCDQFTPHSPSMPKIW 247 (743)
Q Consensus 168 ~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vP~~~~~~~~~~~~~~~~~ng~~~~~~~~~~p~~P~~~ 247 (743)
+||||||+|||||||++.+.++.+|++||+||+++++++|++|||+||++.+++++++++|||.+|+.|.+..+.+|+||
T Consensus 174 ~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~ 253 (840)
T PLN03059 174 QGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMW 253 (840)
T ss_pred CCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEE
Confidence 99999999999999998766777899999999999999999999999999888889999999999998988777899999
Q ss_pred eccCCcccCccCCCCCCCChHHHHHHHHHHHhcCCceeeeeeeccCCCCCCCCCCCcccccCCCCCCcCCCCCCCCchhH
Q 004605 248 TENWPGWFKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWG 327 (743)
Q Consensus 248 ~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~~TSYDY~Api~E~G~~~tpky~ 327 (743)
+|||+|||++||++++.|+++|++.+++++|++|+|++||||||||||||+|+||++++|||||||||+|+|++++|||.
T Consensus 254 tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~ 333 (840)
T PLN03059 254 TEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWG 333 (840)
T ss_pred eccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999998658999
Q ss_pred HHHHHHHHHhhhhhccccCCccccCCCCCccceeeecCCCceeeeccccCCCCcceEEEeceeeecCCceeeecCCCcce
Q 004605 328 HLKELHGAIKLCEHALLNGERSNLSLGSSQEADVYADSSGACAAFLANMDDKNDKTVVFRNVSYHLPAWSVSILPDCKKV 407 (743)
Q Consensus 328 ~lr~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~f~~~~~~~p~~sv~il~~~~~~ 407 (743)
+||++|++++.++++|+..+|....+|+.+++.+|...+ .|++|+.|++.+.+.+|+|+|++|.||+|||+|||||+.+
T Consensus 334 ~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~ 412 (840)
T PLN03059 334 HLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTA 412 (840)
T ss_pred HHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccce
Confidence 999999999999888888888788899999999999766 7999999999999999999999999999999999999999
Q ss_pred eeeccccccccceeecccCCCCCCCCCCCCCCCCccccccccc-ccccCCCccccccchhhccCCCCCCcEEEEEEeeec
Q 004605 408 VFNTANVRAQSSTVEMVPENLQPSEASPDNGSKGLKWQVFKEI-AGIWGEADFVKSGFVDHINTTKDTTDYLWYTTSIIV 486 (743)
Q Consensus 408 ~~~t~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~p~~~Eql~~t~d~~Gyl~Y~t~i~~ 486 (743)
+|+|++++.|.+.+++.+ . ...+.|+++.|+ .+..++.+++...++||+++|+|.+||+||||+|..
T Consensus 413 lfnta~v~~q~~~~~~~~----------~--~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~ 480 (840)
T PLN03059 413 VFNTARLGAQSSQMKMNP----------V--GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHI 480 (840)
T ss_pred eeeccccccccceeeccc----------c--cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEee
Confidence 999999988876553322 1 134689999998 454455677788899999999999999999999988
Q ss_pred CCchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeCCCCCCCceEeeccccCCCccEEEEEEeccCccccccCccccc
Q 004605 487 NENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNEIALLSMTVGLQNAGPFYEWVG 566 (743)
Q Consensus 487 ~~~~~~~~~~~~~~L~i~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~ 566 (743)
...+..++++.+++|+|.+++|++||||||+++|+++++.....++++.+++++.|.|+|+||||||||+|||++|+++.
T Consensus 481 ~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~ 560 (840)
T PLN03059 481 DPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWN 560 (840)
T ss_pred cCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccccc
Confidence 76654456678899999999999999999999999998877777888888889999999999999999999999999999
Q ss_pred ccce-EEEecCccCccccCccCceEEecccccccccccCCCCCCCcccccCCCCCCCCCceEEEEEEECCCCCCCeEEec
Q 004605 567 AGIT-SVKITGFNSGTLDLSTYSWTYKIGLQGEHLGIYNPGYRNNINWVSTMEPPKNQPLTWYKAVVKQPPGDEPIGLDM 645 (743)
Q Consensus 567 kGI~-~V~l~g~~~~~~dl~~~~W~~~~gL~ge~~~~~~~~~~~~~~w~~~~~~~~~~~~~wYk~~F~~~~~~d~~~Ld~ 645 (743)
|||+ +|+|+++++++.||+++.|.|+++|+||.++++.+.....++|.+.+..+..+|++|||++|++|++.|||||||
T Consensus 561 kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm 640 (840)
T PLN03059 561 AGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDM 640 (840)
T ss_pred ccccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEec
Confidence 9999 999999888999999999999999999999998876556789987654445667999999999999999999999
Q ss_pred CCCceEEEEEcCccccccccCCCCCCCCCCCCCCCcccCCCCCCCcccCCCCCCceeeeecCcccccCCccEEEEEEecC
Q 004605 646 LKMGKGLAWLNGEEIGRYWPRKSRKSSPHDECVQECDYRGKFNPDKCITGCGEPSQRWYHIPRSWFKPSENILVIFEEKG 725 (743)
Q Consensus 646 ~g~gKG~vwVNG~~iGRYW~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~c~gPqqtlYhvP~~~Lk~g~N~ivvfE~~g 725 (743)
+|||||+|||||+||||||+. . .+.+|| +.|+|||+|+++||+|||+||||||||||++|||+|+|+||||||+|
T Consensus 641 ~gmGKG~aWVNG~nIGRYW~~-~---a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~g 715 (840)
T PLN03059 641 SSMGKGQIWINGQSIGRHWPA-Y---TAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWG 715 (840)
T ss_pred ccCCCeeEEECCccccccccc-c---cccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecC
Confidence 999999999999999999985 2 357899 88999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeccC
Q 004605 726 GDPTKITFSIRKISG 740 (743)
Q Consensus 726 ~~p~~i~l~~~~~~~ 740 (743)
++|+.|+|.++++.+
T Consensus 716 g~p~~I~~~~~~~~~ 730 (840)
T PLN03059 716 GNPAGISLVKRTTDS 730 (840)
T ss_pred CCCCceEEEEeecCc
Confidence 999999999998765
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-149 Score=1245.64 Aligned_cols=616 Identities=54% Similarity=1.010 Sum_probs=566.6
Q ss_pred ceeEEEeCCcEEECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHH
Q 004605 25 AGNVTYDSRSLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKI 104 (743)
Q Consensus 25 ~~~v~~d~~~f~~dGkp~~l~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~l 104 (743)
++.|++|+++|.+||+|++++||++||+|++|++|+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHH----HHHHHHHHHHhccccccCCCcEEEeccccc
Q 004605 105 IQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK----FMTLIVDMMKREKLFASQGGPIILAQVENE 180 (743)
Q Consensus 105 a~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~----~~~~i~~~l~~~~~~~~~gGpII~~QIENE 180 (743)
|++.||+||||+||||||||++||+|.||...|++.+||+|++|++ |+++|+++|+ +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 9999999999999999999999999999999999999999999988 8999999998 799999999999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHHhcCCccceEEecccCCCccccccCCCCcc-CccC-CCCCCCCceeeccCCcccCcc
Q 004605 181 YGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMCQQFDTPDPVINTCNSFYC-DQFT-PHSPSMPKIWTENWPGWFKTF 258 (743)
Q Consensus 181 yg~~~~~~~~~~~~y~~~L~~~~~~~g~~vP~~~~~~~~~~~~~~~~~ng~~~-~~~~-~~~p~~P~~~~E~~~Gwf~~w 258 (743)
||.+...+++.+++|++|-+.++...+.+|||+||.+.++|+.++++|||.+| +.|. +++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887778888999999999999999999999999999999999999999999 9998 899999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCceeeeeeeccCCCCCCCCCCCcccccCCCCCCcCCCCCCCCchhHHHHHHHHHHhh
Q 004605 259 GGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKL 338 (743)
Q Consensus 259 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~~TSYDY~Api~E~G~~~tpky~~lr~l~~~~~~ 338 (743)
|++++.|++++++..+++++++|+|++||||||||||||++|| ++.+|||||||||+ |..++|||.++|.+|..++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred hhhccccCCccccCCCCCccceeeecCCCceeeeccccCCCCcceEEEeceeeecCCceeeecCCCcceeeecccccccc
Q 004605 339 CEHALLNGERSNLSLGSSQEADVYADSSGACAAFLANMDDKNDKTVVFRNVSYHLPAWSVSILPDCKKVVFNTANVRAQS 418 (743)
Q Consensus 339 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~f~~~~~~~p~~sv~il~~~~~~~~~t~~v~~~~ 418 (743)
+++.+..+++....+++.+ +.|.+|+.|++......+.|++..+.+|+|+|+|++||++++|+|+++..+
T Consensus 332 ~ep~lv~gd~~~~kyg~~~---------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLR---------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ- 401 (649)
T ss_pred cCccccccCcccccccchh---------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-
Confidence 9998877765544444433 449999999999999999999999999999999999999999999885542
Q ss_pred ceeecccCCCCCCCCCCCCCCCCcccccccccccccCCCccccccchhhccCCCCCCcEEEEEEeeecCCchhhhcCCCC
Q 004605 419 STVEMVPENLQPSEASPDNGSKGLKWQVFKEIAGIWGEADFVKSGFVDHINTTKDTTDYLWYTTSIIVNENEEFLKNGSR 498 (743)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~p~~~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~~~~ 498 (743)
|....|+ .++|..++ .+||++|++.++.+.++ .
T Consensus 402 -------------------------~~~~~e~------------~~~~~~~~---~~~~ll~~~~~t~d~sd-------~ 434 (649)
T KOG0496|consen 402 -------------------------WISFTEP------------IPSEAVGQ---SFGGLLEQTNLTKDKSD-------T 434 (649)
T ss_pred -------------------------cccccCC------------CccccccC---cceEEEEEEeeccccCC-------C
Confidence 3333343 34566655 57899999999866543 2
Q ss_pred CeEEec-ccceEEEEEECCEEEEEEeCCCCCCCceEeeccccCCCccEEEEEEeccCccccccCcccccccce-EEEecC
Q 004605 499 PVLLIE-SKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNEIALLSMTVGLQNAGPFYEWVGAGIT-SVKITG 576 (743)
Q Consensus 499 ~~L~i~-~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~-~V~l~g 576 (743)
+.|+|. +++|++||||||+++|+++++.....+++..++.|.+|.|+|+|||||+||+||| +++++.|||+ +|+|+|
T Consensus 435 t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g 513 (649)
T KOG0496|consen 435 TSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNG 513 (649)
T ss_pred ceEeecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEee
Confidence 568888 9999999999999999999987777777888888999999999999999999999 8999999999 999988
Q ss_pred ccCccccCccCceEEecccccccccccCCCCCCCcccccCCCCCCCCCceEEEEEEECCCCCCCeEEecCCCceEEEEEc
Q 004605 577 FNSGTLDLSTYSWTYKIGLQGEHLGIYNPGYRNNINWVSTMEPPKNQPLTWYKAVVKQPPGDEPIGLDMLKMGKGLAWLN 656 (743)
Q Consensus 577 ~~~~~~dl~~~~W~~~~gL~ge~~~~~~~~~~~~~~w~~~~~~~~~~~~~wYk~~F~~~~~~d~~~Ld~~g~gKG~vwVN 656 (743)
+ +|+++++|.|+++|.+|.+..+.++..++++|......+..+|.+||+ +|++|++.+||+|||.|||||+||||
T Consensus 514 ~----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVN 588 (649)
T KOG0496|consen 514 L----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVN 588 (649)
T ss_pred e----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEEC
Confidence 7 568888999999999999999999888889998876544447899999 99999999999999999999999999
Q ss_pred CccccccccCCCCCCCCCCCCCCCcccCCCCCCCcccCCCCCCceeeeecCcccccCCccEEEEEEecCCCCcceEEEEE
Q 004605 657 GEEIGRYWPRKSRKSSPHDECVQECDYRGKFNPDKCITGCGEPSQRWYHIPRSWFKPSENILVIFEEKGGDPTKITFSIR 736 (743)
Q Consensus 657 G~~iGRYW~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~c~gPqqtlYhvP~~~Lk~g~N~ivvfE~~g~~p~~i~l~~~ 736 (743)
|+||||||++ .|||+++ |||++|||++.|.||||||++++|..|+++++
T Consensus 589 G~niGRYW~~------------------------------~G~Q~~y-hvPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~ 637 (649)
T KOG0496|consen 589 GQNIGRYWPS------------------------------FGPQRTY-HVPRSWLKPSGNLLVVFEEEGGDPNGISFVTR 637 (649)
T ss_pred CcccccccCC------------------------------CCCceEE-ECcHHHhCcCCceEEEEEeccCCCccceEEEe
Confidence 9999999996 3896665 59999999999999999999999999999999
Q ss_pred ecc
Q 004605 737 KIS 739 (743)
Q Consensus 737 ~~~ 739 (743)
.+.
T Consensus 638 ~~~ 640 (649)
T KOG0496|consen 638 PVL 640 (649)
T ss_pred Eee
Confidence 876
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.3e-86 Score=716.84 Aligned_cols=293 Identities=39% Similarity=0.726 Sum_probs=222.7
Q ss_pred cEEECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004605 34 SLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (743)
Q Consensus 34 ~f~~dGkp~~l~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VI 113 (743)
+|+|||||++|+|||+||+|+|+++|+|+|+||||+|||||++||+||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCeeecccCceeccCCChhHHH----HHHHHHHHHHhccccccCCCcEEEecccccccccccccC
Q 004605 114 LRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK----FMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYG 189 (743)
Q Consensus 114 lrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~----~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~ 189 (743)
|||||||||||++||+|.||.+++++++||+|+.|++ |+++|+++|+ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 9999999999999999999999999999999999998 8889999998 5889999999999999999943
Q ss_pred cccHHHHHHHHHHHHhcCCc-cceEEecccC--------CCccccccCCCCcc-Cc-------cCCCCCCCCceeeccCC
Q 004605 190 EGGKRYALWAAKMAVAQNIG-VPWIMCQQFD--------TPDPVINTCNSFYC-DQ-------FTPHSPSMPKIWTENWP 252 (743)
Q Consensus 190 ~~~~~y~~~L~~~~~~~g~~-vP~~~~~~~~--------~~~~~~~~~ng~~~-~~-------~~~~~p~~P~~~~E~~~ 252 (743)
.++++||+.|++++++.+++ ++.++++... .++..+..++++.| +. ....+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 5566665421 12222223333344 21 12456889999999999
Q ss_pred cccCccCCCCCCCChHHHHHHHHHHHhcCCceeeeeeeccCCCCCCCCCCCcc----cccCCCCCCcCCCCCCCCchhHH
Q 004605 253 GWFKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFI----TTSYDYEAPIDEYGLPRNPKWGH 328 (743)
Q Consensus 253 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~----~TSYDY~Api~E~G~~~tpky~~ 328 (743)
|||++||++++.+++++++.++++++++|. ++||||||||||||+++|++.. +|||||+|||+|+|++ ||||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~-~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGN-SLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCS-EEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhc-ccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 999999999999999999999999999994 5899999999999999986554 4999999999999998 799999
Q ss_pred HHHHHHH
Q 004605 329 LKELHGA 335 (743)
Q Consensus 329 lr~l~~~ 335 (743)
||+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-37 Score=356.81 Aligned_cols=289 Identities=21% Similarity=0.307 Sum_probs=214.9
Q ss_pred EEEeCCcEEECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEE-ceeCCCCCCCCCeeeeccchhHHHHHHHHH
Q 004605 28 VTYDSRSLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIES-YVFWNGHELSPGKYYFGGRFNLVKFIKIIQ 106 (743)
Q Consensus 28 v~~d~~~f~~dGkp~~l~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~ 106 (743)
|.+++..|++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.||+|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCcEEEEecCc-ccccccCCCCCCeeecccCceecc---------CCChhHHHHHHHHHHHHHhccccccCCCcEEEec
Q 004605 107 QARMYMILRIGP-FVAAEYNYGGIPVWLHYIPGTVFR---------NDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQ 176 (743)
Q Consensus 107 ~~GL~VIlrpGP-yi~aEw~~GG~P~WL~~~p~~~~R---------t~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~Q 176 (743)
+.||+||||||| ..|.+|..+++|.||..++.-..| .+++.|+++.++|+++|++ . .+++||+||+||
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~ire-r-~~~~~~~v~~w~ 156 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRE-R-LYGNGPAVITWQ 156 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHH-H-HhccCCceeEEE
Confidence 999999999999 999999999999999876542222 3456788899999999986 2 389999999999
Q ss_pred ccccccccccccCcccHHHHHHHHHHHHhc-CCccceEEec-ccCCCc-cccccCC-----CCcc--CccCCCCCCC---
Q 004605 177 VENEYGYYESFYGEGGKRYALWAAKMAVAQ-NIGVPWIMCQ-QFDTPD-PVINTCN-----SFYC--DQFTPHSPSM--- 243 (743)
Q Consensus 177 IENEyg~~~~~~~~~~~~y~~~L~~~~~~~-g~~vP~~~~~-~~~~~~-~~~~~~n-----g~~~--~~~~~~~p~~--- 243 (743)
++||||++.+.+..|...+..||++.+-.. ..+-+|=+.. ..+..+ ..|.+.+ .... -++..+...+
T Consensus 157 ~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e~~~~ 236 (673)
T COG1874 157 NDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESEQILE 236 (673)
T ss_pred ccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhhhhHH
Confidence 999999855556678889999999887421 2223332111 000000 0111111 0000 1222333333
Q ss_pred -CceeeccCCccc-CccCCCCCCCC-hHHHHHHHHHHHhcCCceeeeeeeccCCCCC------CCCCCC---c-------
Q 004605 244 -PKIWTENWPGWF-KTFGGRDPHRP-SEDIAFSVARFFQKGGSVHNYYMYHGGTNFG------RTAGGP---F------- 304 (743)
Q Consensus 244 -P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~~---~------- 304 (743)
+....|.+-+|| +.|..+.-... .+.-...+++.|..... -||||+|+|++|+ +.+|+. +
T Consensus 237 ~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~me~~P 315 (673)
T COG1874 237 FVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLMEQLP 315 (673)
T ss_pred HHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeeccCCc
Confidence 556667777888 66665433322 22223445566666554 6999999999999 666653 2
Q ss_pred ccccCCCCCCcCCCCCC
Q 004605 305 ITTSYDYEAPIDEYGLP 321 (743)
Q Consensus 305 ~~TSYDY~Api~E~G~~ 321 (743)
..|+|++.+.+.+.|.+
T Consensus 316 ~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 316 SVVNWALYNKLKRPGAL 332 (673)
T ss_pred chhhhhhccCCCCCccc
Confidence 36899999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=1e-20 Score=209.07 Aligned_cols=265 Identities=15% Similarity=0.210 Sum_probs=157.0
Q ss_pred eeCCCCCCCChHHHHHHHHHcCCCEEEE-ceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCC
Q 004605 49 IHYPRSVPGMWPGLVQQAKEGGVNTIES-YVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYG 127 (743)
Q Consensus 49 ~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~G 127 (743)
+++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||++. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 5667889999999999999999999996 57799999999999999 899999999999999999985 56
Q ss_pred CCCeeecc-cCceecc----------------CCChhHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCc
Q 004605 128 GIPVWLHY-IPGTVFR----------------NDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGE 190 (743)
Q Consensus 128 G~P~WL~~-~p~~~~R----------------t~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~ 190 (743)
..|.||.+ +|++... .++|.|+++++++++.|++ .|++++.||+|||+||++...+.+..
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~---~y~~~p~vi~~~i~NE~~~~~~~~~~ 147 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAE---RYGDHPAVIGWQIDNEPGYHRCYSPA 147 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHH---HHTTTTTEEEEEECCSTTCTS--SHH
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHh---hccccceEEEEEeccccCcCcCCChH
Confidence 78999975 6765321 3457888899999888875 26889999999999999863222223
Q ss_pred ccHHHHHHHHHHHHh--------------------------------------------------------------cCC
Q 004605 191 GGKRYALWAAKMAVA--------------------------------------------------------------QNI 208 (743)
Q Consensus 191 ~~~~y~~~L~~~~~~--------------------------------------------------------------~g~ 208 (743)
+.++|.+||++++.. ...
T Consensus 148 ~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p 227 (374)
T PF02449_consen 148 CQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDP 227 (374)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 556677777777652 111
Q ss_pred ccceEEecccC---CCc-----cccccCC-CCccC----cc--------------CCCCCCCCceeeccCCcccCccCCC
Q 004605 209 GVPWIMCQQFD---TPD-----PVINTCN-SFYCD----QF--------------TPHSPSMPKIWTENWPGWFKTFGGR 261 (743)
Q Consensus 209 ~vP~~~~~~~~---~~~-----~~~~~~n-g~~~~----~~--------------~~~~p~~P~~~~E~~~Gwf~~wG~~ 261 (743)
+.|+.++.-.. ..+ ..++... ..|.. .. +....++|.+++|.++| -..|+..
T Consensus 228 ~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~~~~~~ 306 (374)
T PF02449_consen 228 DHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PVNWRPY 306 (374)
T ss_dssp T-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---SSSSS
T ss_pred CceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CCCCccC
Confidence 11111110000 000 0000000 00000 00 01247899999999999 5567665
Q ss_pred CCCCChHHHHHHHHHHHhcCCceeeeeeeccCCCCCCCCCCCcccccCCCCCCcCCCCCCCCchhHHHHHHHHHHhh
Q 004605 262 DPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKL 338 (743)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~~TSYDY~Api~E~G~~~tpky~~lr~l~~~~~~ 338 (743)
.....+..+....-..++.|+..+.|+-+ ....+|.=.. ..+-|+-+|...+++|.+++++...|+.
T Consensus 307 ~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 307 NRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREPTRRYREVAQLGRELKK 373 (374)
T ss_dssp -----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B-HHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCCCcHHHHHHHHHHHHhc
Confidence 55555666666566778999998887755 3333342211 1246777893358999999999887753
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.51 E-value=4e-13 Score=144.21 Aligned_cols=192 Identities=16% Similarity=0.186 Sum_probs=125.3
Q ss_pred EEEeCCcEEECCEEeEEEEEEeeCCC------CCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHH
Q 004605 28 VTYDSRSLIINGRRELIISAAIHYPR------SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKF 101 (743)
Q Consensus 28 v~~d~~~f~~dGkp~~l~sG~~Hy~R------~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~f 101 (743)
|.+.++.|+|||||++|.+...|.+. .+++.|+++|++||+||+|+||+ .++.+.| +|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~----~h~p~~~------------~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT----HHYPPSP------------RF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE----TTS--SH------------HH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc----ccccCcH------------HH
Confidence 67899999999999999999999753 57889999999999999999999 4444444 89
Q ss_pred HHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHH-HHHHHHHHHHhccccccCCCcEEEeccccc
Q 004605 102 IKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK-FMTLIVDMMKREKLFASQGGPIILAQVENE 180 (743)
Q Consensus 102 l~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~-~~~~i~~~l~~~~~~~~~gGpII~~QIENE 180 (743)
+++|.++||+|+..+.=.-++.|..-|.. .....++.+.+ +.+.+.++|++ ..|+++||||-+-||
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~----~~NHPSIi~W~~gNE 131 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRR----DRNHPSIIMWSLGNE 131 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHH----HTT-TTEEEEEEEES
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHc----CcCcCchheeecCcc
Confidence 99999999999987731112333322211 24567888888 56677777764 589999999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHHhcCCccceEEeccc--CCCccc-cccCCCCcc-----CccC----C--CCCCCCce
Q 004605 181 YGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMCQQF--DTPDPV-INTCNSFYC-----DQFT----P--HSPSMPKI 246 (743)
Q Consensus 181 yg~~~~~~~~~~~~y~~~L~~~~~~~g~~vP~~~~~~~--~~~~~~-~~~~ng~~~-----~~~~----~--~~p~~P~~ 246 (743)
-. ...+++.|.+++++.+.+.|+...... ...+.. .+...+.+. +.+. . ..+++|++
T Consensus 132 ~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i 202 (298)
T PF02836_consen 132 SD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPII 202 (298)
T ss_dssp SH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EE
T ss_pred Cc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCCCeE
Confidence 93 356889999999999999987654431 111111 111111111 0111 1 35789999
Q ss_pred eeccCCcccCc
Q 004605 247 WTENWPGWFKT 257 (743)
Q Consensus 247 ~~E~~~Gwf~~ 257 (743)
.+||....+..
T Consensus 203 ~sEyg~~~~~~ 213 (298)
T PF02836_consen 203 ISEYGADAYNS 213 (298)
T ss_dssp EEEESEBBSST
T ss_pred ehhcccccccc
Confidence 99997655543
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.39 E-value=3.5e-11 Score=141.39 Aligned_cols=158 Identities=12% Similarity=0.080 Sum_probs=115.1
Q ss_pred eeEEEeCCcEEECCEEeEEEEEEeeCCC------CCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHH
Q 004605 26 GNVTYDSRSLIINGRRELIISAAIHYPR------SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLV 99 (743)
Q Consensus 26 ~~v~~d~~~f~~dGkp~~l~sG~~Hy~R------~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 99 (743)
.+|++++..|+|||+|+++.+.+.|... .+++.|+++|+.||++|+|+||+ .+..+.|
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~----sh~p~~~------------ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT----SHYPYSE------------ 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe----ccCCCCH------------
Confidence 4578889999999999999999998652 56788999999999999999999 3333344
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCeeec-------c-cCceeccCCChhHHH-HHHHHHHHHHhccccccCCC
Q 004605 100 KFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH-------Y-IPGTVFRNDTEPFKK-FMTLIVDMMKREKLFASQGG 170 (743)
Q Consensus 100 ~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~-------~-~p~~~~Rt~d~~y~~-~~~~i~~~l~~~~~~~~~gG 170 (743)
+|+++|.++||+|+.... . -|+..|.. + .+....-..+|.+.+ +.+.+.++|++ .+|++
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r----~~NHP 407 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIAR----DKNHP 407 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHh----ccCCc
Confidence 899999999999998863 1 11111211 0 111111123466766 55567777763 68999
Q ss_pred cEEEecccccccccccccCcccHHHHHHHHHHHHhcCCccceEEe
Q 004605 171 PIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMC 215 (743)
Q Consensus 171 pII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vP~~~~ 215 (743)
.||||-|-||.... ......|++.|.+.+++.+.+.|+...
T Consensus 408 SIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 408 SVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred eEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 99999999997531 113457888999999999988887644
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.31 E-value=3.1e-11 Score=148.76 Aligned_cols=258 Identities=17% Similarity=0.203 Sum_probs=159.2
Q ss_pred eeEEEeCCcEEECCEEeEEEEEEeeCC-----C-CCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHH
Q 004605 26 GNVTYDSRSLIINGRRELIISAAIHYP-----R-SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLV 99 (743)
Q Consensus 26 ~~v~~d~~~f~~dGkp~~l~sG~~Hy~-----R-~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 99 (743)
.+|+++++.|+|||||+++.+...|.+ | ++++.|+++|+.||++|+|+||+ .+..+.|
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------ 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 346778899999999999999998854 2 47789999999999999999999 4555555
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHH-HHHHHHHHHHhccccccCCCcEEEeccc
Q 004605 100 KFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK-FMTLIVDMMKREKLFASQGGPIILAQVE 178 (743)
Q Consensus 100 ~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~-~~~~i~~~l~~~~~~~~~gGpII~~QIE 178 (743)
+|+++|.|+||+|+-.. |..|..|...+ +...-+++|.|.+ +.+++.+++++ .+||++||||-+.
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~~~~~~~mV~R----drNHPSIi~WslG 447 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVYVDRIVRHIHA----QKNHPSIIIWSLG 447 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHHHHHHHHHHHh----CCCCCEEEEEECc
Confidence 89999999999999886 33332222101 0111246777876 77888888874 5899999999999
Q ss_pred ccccccccccCcccHHHHHHHHHHHHhcCCccceEEecccCCCccccccCCCCcc-----CccCCCCCCCCceeeccCCc
Q 004605 179 NEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMCQQFDTPDPVINTCNSFYC-----DQFTPHSPSMPKIWTENWPG 253 (743)
Q Consensus 179 NEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vP~~~~~~~~~~~~~~~~~ng~~~-----~~~~~~~p~~P~~~~E~~~G 253 (743)
||-+. | . .++.+.+.+++.+.+.|+.. .+... ..+.+...-.|. ..+....+++|++.+|+--+
T Consensus 448 NE~~~-----g---~-~~~~~~~~~k~~DptR~v~~-~~~~~-~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ha 516 (1021)
T PRK10340 448 NESGY-----G---C-NIRAMYHAAKALDDTRLVHY-EEDRD-AEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYAHA 516 (1021)
T ss_pred cCccc-----c---H-HHHHHHHHHHHhCCCceEEe-CCCcC-ccccceeccccCCHHHHHHHHhCCCCCcEEEEchHhc
Confidence 99862 2 2 24678888898888887643 22111 111222211121 12223345799999998421
Q ss_pred ccCccCCCCCCCChHHHHHHHHH--HHhcCCce---e-----------eeeeeccCCCCCCCCCCCcccccCCCCCCcCC
Q 004605 254 WFKTFGGRDPHRPSEDIAFSVAR--FFQKGGSV---H-----------NYYMYHGGTNFGRTAGGPFITTSYDYEAPIDE 317 (743)
Q Consensus 254 wf~~wG~~~~~~~~~~~~~~~~~--~l~~g~s~---~-----------n~YM~hGGTNfG~~~g~~~~~TSYDY~Api~E 317 (743)
.|.. ....++.-..+.+ .+. |+-+ + .-|+.+||. ||-+.. ..++--+.-++-
T Consensus 517 ----mgn~--~g~~~~yw~~~~~~p~l~-GgfiW~~~D~~~~~~~~~G~~~~~ygGd-~g~~p~----~~~f~~~Glv~~ 584 (1021)
T PRK10340 517 ----MGNG--PGGLTEYQNVFYKHDCIQ-GHYVWEWCDHGIQAQDDNGNVWYKYGGD-YGDYPN----NYNFCIDGLIYP 584 (1021)
T ss_pred ----cCCC--CCCHHHHHHHHHhCCcee-EEeeeecCcccccccCCCCCEEEEECCC-CCCCCC----CcCcccceeECC
Confidence 1110 0012222222211 000 1100 0 123455553 553221 112233467888
Q ss_pred CCCCCCchhHHHHHHHHHHh
Q 004605 318 YGLPRNPKWGHLKELHGAIK 337 (743)
Q Consensus 318 ~G~~~tpky~~lr~l~~~~~ 337 (743)
+|.+ .|.|.++|.+.+-++
T Consensus 585 dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 585 DQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred CCCC-ChhHHHHHHhcceEE
Confidence 8986 899999998865443
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.27 E-value=7.4e-11 Score=145.35 Aligned_cols=147 Identities=15% Similarity=0.116 Sum_probs=112.7
Q ss_pred eEEEeCCcEEECCEEeEEEEEEeeCC------CCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHH
Q 004605 27 NVTYDSRSLIINGRRELIISAAIHYP------RSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVK 100 (743)
Q Consensus 27 ~v~~d~~~f~~dGkp~~l~sG~~Hy~------R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~ 100 (743)
+|+++++.|+|||+|+++.+...|.+ +++++.|+++|+.||++|+|+||+ .++.+.| +
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------L 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 46778889999999999999999843 368899999999999999999999 5555566 8
Q ss_pred HHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHH-HHHHHHHHHHhccccccCCCcEEEecccc
Q 004605 101 FIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK-FMTLIVDMMKREKLFASQGGPIILAQVEN 179 (743)
Q Consensus 101 fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~-~~~~i~~~l~~~~~~~~~gGpII~~QIEN 179 (743)
|+++|.|+||+|+-...=..|+-+ |.. .-.+|+.|.+ +.+++.+++.+ .+||++||||-+-|
T Consensus 399 fydlcDe~GilV~dE~~~e~hg~~-----~~~--------~~~~dp~~~~~~~~~~~~mV~R----drNHPSIi~WSlgN 461 (1027)
T PRK09525 399 WYELCDRYGLYVVDEANIETHGMV-----PMN--------RLSDDPRWLPAMSERVTRMVQR----DRNHPSIIIWSLGN 461 (1027)
T ss_pred HHHHHHHcCCEEEEecCccccCCc-----ccc--------CCCCCHHHHHHHHHHHHHHHHh----CCCCCEEEEEeCcc
Confidence 999999999999988631111111 110 0135777877 77888888874 58999999999999
Q ss_pred cccccccccCcccHHHHHHHHHHHHhcCCccceEEe
Q 004605 180 EYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMC 215 (743)
Q Consensus 180 Eyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vP~~~~ 215 (743)
|-+. + ...+.|.+.+++.+.+.|+...
T Consensus 462 E~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 462 ESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred CCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 9762 2 1346677888888888887654
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.4e-09 Score=130.14 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=96.9
Q ss_pred eeEEEeCCcEEECCEEeEEEEEEeeCC-----CC-CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHH
Q 004605 26 GNVTYDSRSLIINGRRELIISAAIHYP-----RS-VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLV 99 (743)
Q Consensus 26 ~~v~~d~~~f~~dGkp~~l~sG~~Hy~-----R~-~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 99 (743)
.+|+++...|.|||||+++-+..-|.+ |. ..+..+++|++||++|+|+||| . |-|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC-----------H
Confidence 468899999999999999999999976 34 4445999999999999999999 3 55543 3
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHH-HHHHHHHHHHhccccccCCCcEEEeccc
Q 004605 100 KFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK-FMTLIVDMMKREKLFASQGGPIILAQVE 178 (743)
Q Consensus 100 ~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~-~~~~i~~~l~~~~~~~~~gGpII~~QIE 178 (743)
+|++||.++||+||-.+ ..||.. +| +++.|++ ...+|.+++.+ .+|++.||||-+.
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver----~knHPSIiiWs~g 404 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVER----DRNHPSIIIWSLG 404 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHh----ccCCCcEEEEecc
Confidence 89999999999999987 334432 22 7788888 56677788864 4899999999999
Q ss_pred ccccc
Q 004605 179 NEYGY 183 (743)
Q Consensus 179 NEyg~ 183 (743)
||-|.
T Consensus 405 NE~~~ 409 (808)
T COG3250 405 NESGH 409 (808)
T ss_pred ccccC
Confidence 99874
No 11
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.00 E-value=6.5e-10 Score=103.00 Aligned_cols=68 Identities=25% Similarity=0.547 Sum_probs=50.3
Q ss_pred CCceEEEEEEECCCCCCCeE-Ee--cCCCceEEEEEcCccccccccCCCCCCCCCCCCCCCcccCCCCCCCcccCCCCCC
Q 004605 623 QPLTWYKAVVKQPPGDEPIG-LD--MLKMGKGLAWLNGEEIGRYWPRKSRKSSPHDECVQECDYRGKFNPDKCITGCGEP 699 (743)
Q Consensus 623 ~~~~wYk~~F~~~~~~d~~~-Ld--~~g~gKG~vwVNG~~iGRYW~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~c~gP 699 (743)
.+..|||++|+....+..+. |+ .+...+++|||||++|||||+. +||
T Consensus 34 ~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~------------------------------~g~ 83 (111)
T PF13364_consen 34 AGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG------------------------------IGP 83 (111)
T ss_dssp SCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT------------------------------TEC
T ss_pred CCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC------------------------------CCc
Confidence 47899999996322111223 33 3567899999999999999964 589
Q ss_pred ceeeeecCcccccCCccEEEEE
Q 004605 700 SQRWYHIPRSWFKPSENILVIF 721 (743)
Q Consensus 700 qqtlYhvP~~~Lk~g~N~ivvf 721 (743)
|++++ ||.++|+.++|.|+|+
T Consensus 84 q~tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 84 QTTFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp CEEEE-E-BTTBTTCEEEEEEE
T ss_pred cEEEE-eCceeecCCCEEEEEE
Confidence 99988 9999999886665554
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.78 E-value=8.9e-08 Score=100.48 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=110.3
Q ss_pred ECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCC-CCCCCCe-eeeccchhHHHHHHHHHHcCcEEEE
Q 004605 37 INGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNG-HELSPGK-YYFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 37 ~dGkp~~l~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~-hEp~~G~-~dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
.+|+++.+.+-+.|.... ..-++.+++||++|+|+||+.+.|.. .++.++. ++=+.-..|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 379999999999993221 27889999999999999999999954 4467764 6656667999999999999999998
Q ss_pred ecCcccccccCCCCCCeeecccCceeccCCChhHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccc--cC---
Q 004605 115 RIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESF--YG--- 189 (743)
Q Consensus 115 rpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~--~~--- 189 (743)
-.= + .|.|...... -...+...++++.+.+.|+. .+++..+|++++|=||-...... ..
T Consensus 81 d~h----~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~---~y~~~~~v~~~el~NEP~~~~~~~~w~~~~ 144 (281)
T PF00150_consen 81 DLH----N------APGWANGGDG---YGNNDTAQAWFKSFWRALAK---RYKDNPPVVGWELWNEPNGGNDDANWNAQN 144 (281)
T ss_dssp EEE----E------STTCSSSTST---TTTHHHHHHHHHHHHHHHHH---HHTTTTTTEEEESSSSGCSTTSTTTTSHHH
T ss_pred Eec----c------Cccccccccc---cccchhhHHHHHhhhhhhcc---ccCCCCcEEEEEecCCccccCCcccccccc
Confidence 762 1 1666332111 11223344466666666664 24567789999999998643110 00
Q ss_pred -cccHHHHHHHHHHHHhcCCccceEEec
Q 004605 190 -EGGKRYALWAAKMAVAQNIGVPWIMCQ 216 (743)
Q Consensus 190 -~~~~~y~~~L~~~~~~~g~~vP~~~~~ 216 (743)
..-.++++.+.+.+|+.+.+.+++...
T Consensus 145 ~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 145 PADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp THHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred chhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 011356666677788888887766543
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.65 E-value=1.1e-07 Score=88.32 Aligned_cols=84 Identities=21% Similarity=0.270 Sum_probs=58.4
Q ss_pred hhhccCCCCCCcEEEEEEeeecCCchhhhcCCCCCe-EEec-ccceEEEEEECCEEEEEEeCCCCCCCceEeeccc-cCC
Q 004605 465 VDHINTTKDTTDYLWYTTSIIVNENEEFLKNGSRPV-LLIE-SKGHALHAFANQELQGSASGNGTHPPFKYKNPIS-LKA 541 (743)
Q Consensus 465 ~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~~~~~~-L~i~-~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~-l~~ 541 (743)
.+..+.+++++|++|||++|+....+ .... |.+. +.+++++|||||+++|+..+.. .+..+|+++.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~------~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQD------TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEE------EEEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcc------eeEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 44555556789999999999764333 1233 4444 6799999999999999988321 22355655543 555
Q ss_pred CccEEEEEEeccCc
Q 004605 542 GKNEIALLSMTVGL 555 (743)
Q Consensus 542 g~~~L~ILven~Gr 555 (743)
++|+|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67899999999997
No 14
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.13 E-value=2.2e-05 Score=76.95 Aligned_cols=99 Identities=27% Similarity=0.355 Sum_probs=69.0
Q ss_pred CCCCCcEEEEEEeeecCCchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeCCCCCCCceEeeccccCCCc-cEEEEE
Q 004605 471 TKDTTDYLWYTTSIIVNENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGK-NEIALL 549 (743)
Q Consensus 471 t~d~~Gyl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~IL 549 (743)
.....|+.|||++|+++... .+....|.+.++.+.+.|||||+++|...+... .+.+.+.-.|+.|. |+|.|.
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~--~~~~dIt~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYT--PFEFDITDYLKPGEENTLAVR 136 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTTS---EEEECGGGSSSEEEEEEEEE
T ss_pred ccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCcC--CeEEeChhhccCCCCEEEEEE
Confidence 34578999999999887532 245677899999999999999999999876542 34444443477887 999999
Q ss_pred EeccCccccccCc-ccccccce-EEEec
Q 004605 550 SMTVGLQNAGPFY-EWVGAGIT-SVKIT 575 (743)
Q Consensus 550 ven~Gr~NyG~~~-~~~~kGI~-~V~l~ 575 (743)
|.+.....+-+.+ .....||. +|.|.
T Consensus 137 v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 137 VDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EeecCCCceeecCcCCccCccccEEEEE
Confidence 9865543220111 12457998 88873
No 15
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.87 E-value=0.00015 Score=78.10 Aligned_cols=152 Identities=17% Similarity=0.139 Sum_probs=82.3
Q ss_pred eeEEEeCCcEE--ECCEEeEEEEEEeeCCCC-----------CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeee
Q 004605 26 GNVTYDSRSLI--INGRRELIISAAIHYPRS-----------VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYF 92 (743)
Q Consensus 26 ~~v~~d~~~f~--~dGkp~~l~sG~~Hy~R~-----------~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF 92 (743)
..|++.++.|+ .+|++|+|.+..+.+-.. .++.|++++..||++|+||||+|- ..|..
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~~----- 79 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPSK----- 79 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS-----
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCCC-----
Confidence 34888999998 799999999887765432 467899999999999999999973 23333
Q ss_pred ccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCCh--hHHH-HHHHHHHHHHhccccccCC
Q 004605 93 GGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTE--PFKK-FMTLIVDMMKREKLFASQG 169 (743)
Q Consensus 93 ~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~--~y~~-~~~~i~~~l~~~~~~~~~g 169 (743)
|=++++++.++.|+|||+-.+. | ...+-..+| .|-. ++++....|.. ..+-
T Consensus 80 ----nHd~CM~~~~~aGIYvi~Dl~~-----------p-------~~sI~r~~P~~sw~~~l~~~~~~vid~----fa~Y 133 (314)
T PF03198_consen 80 ----NHDECMSAFADAGIYVILDLNT-----------P-------NGSINRSDPAPSWNTDLLDRYFAVIDA----FAKY 133 (314)
T ss_dssp ------HHHHHHHHHTT-EEEEES-B-----------T-------TBS--TTS------HHHHHHHHHHHHH----HTT-
T ss_pred ----CHHHHHHHHHhCCCEEEEecCC-----------C-------CccccCCCCcCCCCHHHHHHHHHHHHH----hccC
Confidence 7789999999999999998752 1 122323344 4433 34444444431 1334
Q ss_pred CcEEEeccccccccccccc--CcccHHHHHHHHHHHHhcCC-ccce
Q 004605 170 GPIILAQVENEYGYYESFY--GEGGKRYALWAAKMAVAQNI-GVPW 212 (743)
Q Consensus 170 GpII~~QIENEyg~~~~~~--~~~~~~y~~~L~~~~~~~g~-~vP~ 212 (743)
.+++++=+.||.-.-.... .+.-++..+-+|+-.++.+. .+|+
T Consensus 134 ~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 6899999999985321100 01234455555555566555 4565
No 16
>PLN02801 beta-amylase
Probab=97.63 E-value=0.00018 Score=81.37 Aligned_cols=113 Identities=22% Similarity=0.409 Sum_probs=81.6
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEE--EEecCcccccccCCC----
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG---- 127 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--IlrpGPyi~aEw~~G---- 127 (743)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++ |+.. .-|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566889999999999999999999999997 699999996 667899999999996 4555 33433 111
Q ss_pred -CCCeeecc----cCceeccC-----C---------C----------hhHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 004605 128 -GIPVWLHY----IPGTVFRN-----D---------T----------EPFKKFMTLIVDMMKREKLFASQGGPIILAQV 177 (743)
Q Consensus 128 -G~P~WL~~----~p~~~~Rt-----~---------d----------~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QI 177 (743)
-||.|+.+ +|++.+.. + + ..|.+|++.....++. + -.+|-|..+||
T Consensus 109 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~--l~~~~I~eI~V 183 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD--F--LEAGVIIDIEV 183 (517)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH--h--ccCCeeEEEEE
Confidence 38999974 56653211 0 0 2455566666666653 2 24478888887
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=97.60 E-value=7.2e-05 Score=84.92 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=75.3
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecc
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~ 135 (743)
..|+++|++||++|+|++|+-|.|+..+|. +|++|.+|-...+++|+.|.++||.+|+--= .-.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 468999999999999999999999999999 7899988888999999999999999886652 2348999976
Q ss_pred cCceeccCCChhHHHHHHHHHHHHH
Q 004605 136 IPGTVFRNDTEPFKKFMTLIVDMMK 160 (743)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~i~~~l~ 160 (743)
..+-.=|..-..|.+|.+.+++.++
T Consensus 126 ~gGw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 126 RGGWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHhC
Confidence 5443111112456667777776665
No 18
>PLN00197 beta-amylase; Provisional
Probab=97.55 E-value=0.00058 Score=77.94 Aligned_cols=112 Identities=26% Similarity=0.469 Sum_probs=81.3
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEE--EEecCcccccccCCC----
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG---- 127 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--IlrpGPyi~aEw~~G---- 127 (743)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++ |+.. .-|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566889999999999999999999999998 899999996 567899999999996 4555 33443 112
Q ss_pred -CCCeeecc----cCceeccCC--------------C----------hhHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 004605 128 -GIPVWLHY----IPGTVFRND--------------T----------EPFKKFMTLIVDMMKREKLFASQGGPIILAQV 177 (743)
Q Consensus 128 -G~P~WL~~----~p~~~~Rt~--------------d----------~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QI 177 (743)
-||.|+.+ +|++.+... + ..|.+|++.....++. + . ++.|.-+||
T Consensus 199 IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~--~-l--~~~I~eI~V 272 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKH--L-L--GDTIVEIQV 272 (573)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHH--H-h--cCceeEEEe
Confidence 38999975 566543211 1 2455666666666653 3 2 346888887
No 19
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.54 E-value=0.00014 Score=76.70 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=77.1
Q ss_pred CCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHH-HHHHHHHH
Q 004605 80 WNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK-FMTLIVDM 158 (743)
Q Consensus 80 Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~-~~~~i~~~ 158 (743)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |-. ..|.|+...+ .+..++ +.+.|...
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 332222 433 6899987432 111222 22222233
Q ss_pred HHhccccccCCCcEEEecccccccccc-------cccCcccHHHHHHHHHHHHhcCCccceEEec
Q 004605 159 MKREKLFASQGGPIILAQVENEYGYYE-------SFYGEGGKRYALWAAKMAVAQNIGVPWIMCQ 216 (743)
Q Consensus 159 l~~~~~~~~~gGpII~~QIENEyg~~~-------~~~~~~~~~y~~~L~~~~~~~g~~vP~~~~~ 216 (743)
+.+ | +|.|..|+|=||--... ..+...+.+|+...-+.+|+.+.++.++.++
T Consensus 67 ~~r----y--~g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGR----Y--KGKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHH----h--CCcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 332 2 35689999999943210 0011234579988889999998888888875
No 20
>PLN02803 beta-amylase
Probab=97.52 E-value=0.00028 Score=80.21 Aligned_cols=111 Identities=21% Similarity=0.461 Sum_probs=80.6
Q ss_pred CCChHHHHHHHHHcCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEE--EEecCcccccccCCC-----
Q 004605 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG----- 127 (743)
Q Consensus 56 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--IlrpGPyi~aEw~~G----- 127 (743)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.. .-|+- +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~I 179 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSI 179 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 455677999999999999999999999998 599999996 667899999999996 4555 33443 112
Q ss_pred CCCeeecc----cCceeccCC--------------C----------hhHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 004605 128 GIPVWLHY----IPGTVFRND--------------T----------EPFKKFMTLIVDMMKREKLFASQGGPIILAQV 177 (743)
Q Consensus 128 G~P~WL~~----~p~~~~Rt~--------------d----------~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QI 177 (743)
-||.|+.+ +|+|.+... + ..|.+|++.....++. ++ ++-|.-+||
T Consensus 180 pLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~l---~~~I~eI~V 252 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKD--YL---GGVIAEIQV 252 (548)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHH--Hh---cCceEEEEe
Confidence 38999875 466543211 0 2466677666666663 32 478888888
No 21
>PLN02705 beta-amylase
Probab=97.49 E-value=0.00031 Score=80.62 Aligned_cols=113 Identities=19% Similarity=0.344 Sum_probs=81.5
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEE--EEecCcccccccCCC----
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG---- 127 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--IlrpGPyi~aEw~~G---- 127 (743)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.. .-|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 3456788999999999999999999999998 799999996 667899999999995 5655 33544 212
Q ss_pred -CCCeeecc----cCceeccC------------------------CChhHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 004605 128 -GIPVWLHY----IPGTVFRN------------------------DTEPFKKFMTLIVDMMKREKLFASQGGPIILAQV 177 (743)
Q Consensus 128 -G~P~WL~~----~p~~~~Rt------------------------~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QI 177 (743)
-||.|+.+ +|+|.+.. --..|.+|++.....++. ++ .+|-|.-+||
T Consensus 340 IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~--fl--~~g~I~eI~V 414 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDD--LF--VEGLITAVEI 414 (681)
T ss_pred ccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHH--hc--cCCceeEEEe
Confidence 38999975 46654321 113466666666666653 32 3467888887
No 22
>PLN02161 beta-amylase
Probab=97.47 E-value=0.00047 Score=78.07 Aligned_cols=112 Identities=18% Similarity=0.330 Sum_probs=80.4
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEE--EEecCcccccccCCC----
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG---- 127 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--IlrpGPyi~aEw~~G---- 127 (743)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.. .-|+- +-|
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~ 188 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGG 188 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccC
Confidence 3445678899999999999999999999998 899999995 667899999999996 4554 33433 111
Q ss_pred -CCCeeecc----cCceeccCC--------------C----------hhHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 004605 128 -GIPVWLHY----IPGTVFRND--------------T----------EPFKKFMTLIVDMMKREKLFASQGGPIILAQV 177 (743)
Q Consensus 128 -G~P~WL~~----~p~~~~Rt~--------------d----------~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QI 177 (743)
-||.|+.+ +|+|.+... + ..|.+|++.....++. ++ ++-|.-+||
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~~---~~~I~eI~V 262 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEP--YI---GNVIEEISI 262 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHH--Hh---cCceEEEEe
Confidence 28999975 566643211 1 2466666666666653 32 467888887
No 23
>PLN02905 beta-amylase
Probab=97.43 E-value=0.00044 Score=79.69 Aligned_cols=112 Identities=18% Similarity=0.416 Sum_probs=80.7
Q ss_pred CCChHHHHHHHHHcCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEE--EEecCcccccccCCC-----
Q 004605 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG----- 127 (743)
Q Consensus 56 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--IlrpGPyi~aEw~~G----- 127 (743)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.. .-|+- +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~I 358 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCI 358 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 344677899999999999999999999998 899999996 667899999999996 4555 33443 112
Q ss_pred CCCeeecc----cCceecc------------------------CCChhHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 004605 128 GIPVWLHY----IPGTVFR------------------------NDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQV 177 (743)
Q Consensus 128 G~P~WL~~----~p~~~~R------------------------t~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QI 177 (743)
-||.|+.+ +|+|.+. |--..|.+|++.....++. ++ .+|-|.-+||
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~--fl--~~g~I~eI~V 432 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDE--FF--EDGVISMVEV 432 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHH--Hh--cCCceEEEEe
Confidence 38999975 5665432 1113566666666666653 22 3467888887
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.39 E-value=0.002 Score=69.53 Aligned_cols=225 Identities=19% Similarity=0.232 Sum_probs=107.8
Q ss_pred CCcEE-ECCEEeEEEEEEeeCC---CCCCCChHHHHHHHHHcCCCEEEEcee--CCCC-C-------C----CCCeeeec
Q 004605 32 SRSLI-INGRRELIISAAIHYP---RSVPGMWPGLVQQAKEGGVNTIESYVF--WNGH-E-------L----SPGKYYFG 93 (743)
Q Consensus 32 ~~~f~-~dGkp~~l~sG~~Hy~---R~~~~~W~~~l~k~Ka~G~N~V~~yv~--Wn~h-E-------p----~~G~~dF~ 93 (743)
++.|. -||+||+.++ .-.+. |...+.|+.-|+..|+.|||+|++=++ |.-. . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 35666 7999999998 54443 678899999999999999999999765 4322 1 1 12337777
Q ss_pred cc-----hhHHHHHHHHHHcCcEEEEec---CcccccccCCCCCCeeecccCceeccCCChhHHHHHHHHHHHHHhcccc
Q 004605 94 GR-----FNLVKFIKIIQQARMYMILRI---GPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKKFMTLIVDMMKREKLF 165 (743)
Q Consensus 94 g~-----~dl~~fl~la~~~GL~VIlrp---GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~i~~~l~~~~~~ 165 (743)
.- ..+++.|+.|.++||.+-|-| +||.-+-|-.| | ..| ..+....|.+.|++.++..
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m----~~e~~~~Y~~yv~~Ry~~~--- 145 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM----PPENAERYGRYVVARYGAY--- 145 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS-----HHHHHHHHHHHHHHHTT----
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC----CHHHHHHHHHHHHHHHhcC---
Confidence 53 589999999999999975433 34443444333 1 111 2233444777777777632
Q ss_pred ccCCCcEEEecccccccccccccCcccHHHHHHHHHHHHhcCCccce-EEeccc-CCC-----cccccc--C-CCCcc--
Q 004605 166 ASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPW-IMCQQF-DTP-----DPVINT--C-NSFYC-- 233 (743)
Q Consensus 166 ~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vP~-~~~~~~-~~~-----~~~~~~--~-ng~~~-- 233 (743)
.+|| |=|-||+. ......++.+.+.+.+++.+..-+. ++..+. ..+ .+-++. . .|...
T Consensus 146 ----~Nvi-W~l~gd~~-----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~~~~ 215 (289)
T PF13204_consen 146 ----PNVI-WILGGDYF-----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGHNRYD 215 (289)
T ss_dssp ----SSEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S--TT
T ss_pred ----CCCE-EEecCccC-----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCCCccc
Confidence 2455 77999991 1235677888888888876543332 222221 111 000111 1 12111
Q ss_pred -C-------ccC-CCCCCCCceeec-cCCcccCccCCCCCCCChHHHHHHHHHHHhcCC
Q 004605 234 -D-------QFT-PHSPSMPKIWTE-NWPGWFKTFGGRDPHRPSEDIAFSVARFFQKGG 282 (743)
Q Consensus 234 -~-------~~~-~~~p~~P~~~~E-~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 282 (743)
+ ... ...|.+|.+..| -|.|--..+.+.....+++++...+=+-+-+|+
T Consensus 216 ~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 216 QDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred chHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 0 111 456899999999 344543333333345577888765534444455
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.05 E-value=0.00058 Score=76.01 Aligned_cols=110 Identities=17% Similarity=0.307 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHcCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCccccc----ccCCCCCCee
Q 004605 58 MWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAA----EYNYGGIPVW 132 (743)
Q Consensus 58 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~a----Ew~~GG~P~W 132 (743)
.-+..|+++|++|++.|.+.|.|...|.. |++|||+| ..++.+++++.||++.+-.-=.-|+ ..-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 35678999999999999999999999997 99999995 6688999999999965422113332 1112248999
Q ss_pred ecc---cCceec------------------cCCChhHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 004605 133 LHY---IPGTVF------------------RNDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQV 177 (743)
Q Consensus 133 L~~---~p~~~~------------------Rt~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QI 177 (743)
+.. ..+|.. || =..|.+|++......+. + . +-|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~--~--~--~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSD--Y--L--STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHH--H--H--TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHH--H--H--hhheEEEe
Confidence 974 124421 22 24566666666666653 2 1 67777776
No 26
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=97.01 E-value=0.0061 Score=60.70 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=87.6
Q ss_pred CCCCCCChHHHHHHHHHcCCCEEEEceeCCCCC-----CC---CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccc
Q 004605 52 PRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHE-----LS---PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAE 123 (743)
Q Consensus 52 ~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hE-----p~---~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aE 123 (743)
..+.++.|+.+++.||++|+|+|=+- |.-.+ |. ++.|.-....-|+.+|++|++.||+|++..+-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 56899999999999999999998432 22111 11 22222233458999999999999999988741
Q ss_pred cCCCCCCeeecccCceeccCCChhHH-HHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcccHHHHHHHHHH
Q 004605 124 YNYGGIPVWLHYIPGTVFRNDTEPFK-KFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKM 202 (743)
Q Consensus 124 w~~GG~P~WL~~~p~~~~Rt~d~~y~-~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~ 202 (743)
-|.|-.+ .|.... +.-++|+..+.. .|+++..+=+|=|-.|..... ....++.+.|.+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~---~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l~~~ 147 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQ---RYGHHPSFYGWYIPYEIDDYN----WNAPERFALLGKY 147 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHH---HHcCCCCCceEEEecccCCcc----cchHHHHHHHHHH
Confidence 1223221 222222 244566777763 468888999999999987542 2345666777777
Q ss_pred HHhcCCccceEE
Q 004605 203 AVAQNIGVPWIM 214 (743)
Q Consensus 203 ~~~~g~~vP~~~ 214 (743)
+++.--+.|+..
T Consensus 148 lk~~s~~~Pv~I 159 (166)
T PF14488_consen 148 LKQISPGKPVMI 159 (166)
T ss_pred HHHhCCCCCeEE
Confidence 666533556543
No 27
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.73 E-value=0.0089 Score=70.89 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=56.1
Q ss_pred CCCcEEEEEEeeecCCchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeCCCCCCCceEeeccccCCCc-cEEEEEEe
Q 004605 473 DTTDYLWYTTSIIVNENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGK-NEIALLSM 551 (743)
Q Consensus 473 d~~Gyl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILve 551 (743)
+..|..|||++|.++.. +.+....|.+.++...+.|||||++||...+... .+.+.+.-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~--~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYT--PFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEeeeEcCCcc--ceEEeCchhccCCCceEEEEEEe
Confidence 46789999999988643 1245678999999999999999999999875432 24444333366674 59999997
Q ss_pred cc
Q 004605 552 TV 553 (743)
Q Consensus 552 n~ 553 (743)
|.
T Consensus 136 n~ 137 (604)
T PRK10150 136 NE 137 (604)
T ss_pred cC
Confidence 74
No 28
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.67 E-value=0.0022 Score=62.79 Aligned_cols=67 Identities=21% Similarity=0.368 Sum_probs=50.4
Q ss_pred CCCceEEEEEEECCCCC--CCeEEecCCC-ceEEEEEcCccccccccCCCCCCCCCCCCCCCcccCCCCCCCcccCCCCC
Q 004605 622 NQPLTWYKAVVKQPPGD--EPIGLDMLKM-GKGLAWLNGEEIGRYWPRKSRKSSPHDECVQECDYRGKFNPDKCITGCGE 698 (743)
Q Consensus 622 ~~~~~wYk~~F~~~~~~--d~~~Ld~~g~-gKG~vwVNG~~iGRYW~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~c~g 698 (743)
..+..|||++|++|... ..++|.+.|. ....|||||+.+|+-...+ .
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~------------------------------~ 115 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY------------------------------T 115 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT------------------------------S
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc------------------------------C
Confidence 34679999999999743 4678988876 5899999999999966421 1
Q ss_pred CceeeeecCcccccCCc-cEEEEE
Q 004605 699 PSQRWYHIPRSWFKPSE-NILVIF 721 (743)
Q Consensus 699 PqqtlYhvP~~~Lk~g~-N~ivvf 721 (743)
| -. +-|+. .|++|+ |+|.|.
T Consensus 116 ~-~~-~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 116 P-FE-FDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp --EE-EECGG-GSSSEEEEEEEEE
T ss_pred C-eE-EeChh-hccCCCCEEEEEE
Confidence 2 22 45864 789988 999884
No 29
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.67 E-value=0.0011 Score=75.94 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeec
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~ 134 (743)
..|+++|+.||++|+|+.++-+.|+..+|. +|++|-+|....+++|+.+.++||..|+-- -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 358999999999999999999999999999 699999999999999999999999977665 2456899998
Q ss_pred ccCceeccCCChhHHHHHHHHHHHHHh
Q 004605 135 YIPGTVFRNDTEPFKKFMTLIVDMMKR 161 (743)
Q Consensus 135 ~~p~~~~Rt~d~~y~~~~~~i~~~l~~ 161 (743)
+.-+-.=|..=..|.+|.+.+++.+..
T Consensus 130 ~~ggw~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGWLNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGGGSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccccCHHHHHHHHHHHHHHHHHhCC
Confidence 744431122224566677777777753
No 30
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.016 Score=65.56 Aligned_cols=118 Identities=13% Similarity=0.059 Sum_probs=71.7
Q ss_pred CCCCh-----HHHHHHHHHcCCCEEEEceeCCCCCCC----CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccC
Q 004605 55 VPGMW-----PGLVQQAKEGGVNTIESYVFWNGHELS----PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYN 125 (743)
Q Consensus 55 ~~~~W-----~~~l~k~Ka~G~N~V~~yv~Wn~hEp~----~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~ 125 (743)
...-| ++.+..||.+|||+||+++.|..+++. |...+=+--.-|++.|+.|++.||+|++-.-=|-+ -.
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~--~~ 143 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG--GN 143 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC--CC
Confidence 45668 899999999999999999994433554 32321121237889999999999999987321100 00
Q ss_pred CCCCCeeecccCceeccCCChhHHHHHHHHHHHHHhccccccCCCcEEEeccccccc
Q 004605 126 YGGIPVWLHYIPGTVFRNDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQVENEYG 182 (743)
Q Consensus 126 ~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg 182 (743)
++--..|.... . .......+.+.++.+.|+. .+++.-.||++|+=||=-
T Consensus 144 ~~~~~s~~~~~--~---~~~~~~~~~~~~~w~~ia~---~f~~~~~VIg~~~~NEP~ 192 (407)
T COG2730 144 NGHEHSGYTSD--Y---KEENENVEATIDIWKFIAN---RFKNYDTVIGFELINEPN 192 (407)
T ss_pred CCcCccccccc--c---cccchhHHHHHHHHHHHHH---hccCCCceeeeeeecCCc
Confidence 11111222210 0 0022333444555555553 256678999999999975
No 31
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.26 E-value=0.0063 Score=70.20 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=73.9
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeec
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~ 134 (743)
..|+++++.||++|+|+.|+-|.|+...|. +|+++-.|....+++|+.|.++||..|+-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 358999999999999999999999999997 567888888999999999999999987665 1234899997
Q ss_pred cc-CceeccCCChhHHHHHHHHHHHHH
Q 004605 135 YI-PGTVFRNDTEPFKKFMTLIVDMMK 160 (743)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~i~~~l~ 160 (743)
.. -+-.=|..-..|.+|.+.+++.+.
T Consensus 141 ~~yGGW~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSWTNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHhc
Confidence 53 443112222346667777776665
No 32
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.14 E-value=0.0067 Score=69.90 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeec
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~ 134 (743)
..|+++++.||++|+|+.|+-+.|...+|. +++++=+|....+++|+.|.++||.+|+-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 556777788899999999999999987665 2335899997
Q ss_pred cc-CceeccCCChhHHHHHHHHHHHHH
Q 004605 135 YI-PGTVFRNDTEPFKKFMTLIVDMMK 160 (743)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~i~~~l~ 160 (743)
.. -+-.=|..=..|.+|.+.+++.+.
T Consensus 143 ~~~GGW~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSWRNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 53 333112222456667777776665
No 33
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.02 E-value=0.02 Score=63.07 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCEEEEceeCCCCCCCC-CeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCc
Q 004605 60 PGLVQQAKEGGVNTIESYVFWNGHELSP-GKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPG 138 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~ 138 (743)
+|.|+.+|+.|+|.||.=| |+ .|.. |..|.+ +..++.+-|+++||.|+|-.- | ..-|..-|- ...|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-Y-SD~WaDPg~----Q~~P~ 94 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-Y-SDFWADPGK----QNKPA 94 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--S-SSS--BTTB-----B--T
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-c-cCCCCCCCC----CCCCc
Confidence 6899999999999999977 54 4444 444444 445555556889999999873 2 122322220 00111
Q ss_pred eeccCCChh-----HHHHHHHHHHHHHhccccccCCCcEEEeccccccc
Q 004605 139 TVFRNDTEP-----FKKFMTLIVDMMKREKLFASQGGPIILAQVENEYG 182 (743)
Q Consensus 139 ~~~Rt~d~~-----y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg 182 (743)
.. +..+.. -.+|.+.++..|+. +|=.+=||||.||..
T Consensus 95 aW-~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 95 AW-ANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEIN 136 (332)
T ss_dssp TC-TSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGG
T ss_pred cC-CCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccc
Confidence 10 111211 12288888888875 444678999999984
No 34
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.99 E-value=0.011 Score=68.12 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecc
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~ 135 (743)
..|+++++.||++|+|+.|+-+.|+..+|. +|+++=+|....+++|+.|.++||..++--= =| -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHH
Confidence 458999999999999999999999999996 5777778889999999999999999776651 13 38999986
Q ss_pred cCceeccCCChhHHHHHHHHHHHHH
Q 004605 136 IPGTVFRNDTEPFKKFMTLIVDMMK 160 (743)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~i~~~l~ 160 (743)
.-+-.=|..=..|.+|.+.+++.+.
T Consensus 125 ~GGW~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDFLNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 5443222223456667776666654
No 35
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.97 E-value=0.011 Score=68.27 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecc
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~ 135 (743)
..|+++++.||++|+|+.|+-|.|+..+|. .|.+|-.|....+++|+.|.++||.-++-- -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 358999999999999999999999999996 477888899999999999999999876654 12248999986
Q ss_pred cCceeccCCChhHHHHHHHHHHHHH
Q 004605 136 IPGTVFRNDTEPFKKFMTLIVDMMK 160 (743)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~i~~~l~ 160 (743)
.-+-.=|..-..|.+|.+.+++.+.
T Consensus 126 ~GGW~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDWLNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 5432111112345556666655553
No 36
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.96 E-value=0.039 Score=69.33 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=63.0
Q ss_pred cEEEEEEeeecCCchhhhcCCC-CCeEEecccceEEEEEECCEEEEEEeCCCCCCCceEeeccccCCCccEEEEEEeccC
Q 004605 476 DYLWYTTSIIVNENEEFLKNGS-RPVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNEIALLSMTVG 554 (743)
Q Consensus 476 Gyl~Y~t~i~~~~~~~~~~~~~-~~~L~i~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~G 554 (743)
+-.|||++|.++..- .+. +..|..+++...+.|||||+++|...+.. ..+.|.+.-.|+.|+|+|.|.|..--
T Consensus 120 ~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~s 193 (1027)
T PRK09525 120 PTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRWS 193 (1027)
T ss_pred CeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEecC
Confidence 568999999886431 122 57889999999999999999999876543 23444433336778999999985322
Q ss_pred ccccccCccc----ccccce-EEEecC
Q 004605 555 LQNAGPFYEW----VGAGIT-SVKITG 576 (743)
Q Consensus 555 r~NyG~~~~~----~~kGI~-~V~l~g 576 (743)
. |.++++ ...||. +|.|.-
T Consensus 194 d---gs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 194 D---GSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred C---CCccccCCceeeccccceEEEEE
Confidence 1 222321 236998 998844
No 37
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.95 E-value=0.029 Score=70.51 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=65.2
Q ss_pred cEEEEEEeeecCCchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeCCCCCCCceEeeccccCCCccEEEEEEeccCc
Q 004605 476 DYLWYTTSIIVNENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNEIALLSMTVGL 555 (743)
Q Consensus 476 Gyl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr 555 (743)
+-.|||++|.++.. +.+.+..|.+.++...+.|||||++||...+... .+.|.+.-.|+.|+|+|.|.|.+-..
T Consensus 109 ~~g~Yrr~F~lp~~----~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~--pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDG----WQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRL--TAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCcc----cccCcEEEEECccceEEEEEECCEEeccccCCCc--cEEEEcchhhCCCccEEEEEEEecCC
Confidence 56799999988643 1245678999999999999999999998765432 34444332367788999999975432
Q ss_pred cccccCccc----ccccce-EEEecCc
Q 004605 556 QNAGPFYEW----VGAGIT-SVKITGF 577 (743)
Q Consensus 556 ~NyG~~~~~----~~kGI~-~V~l~g~ 577 (743)
|.++++ ..-||. +|.|...
T Consensus 183 ---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 ---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred ---CCccccCCccccccccceEEEEEe
Confidence 222221 246998 9988543
No 38
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.86 E-value=0.014 Score=67.41 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeec
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~ 134 (743)
..|+++++.||+||+|+.|+-|.|+..+|. +|+++=.|....+++|+.|.++||..++--= =| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHH
Confidence 458999999999999999999999999997 6677878889999999999999998765541 13 3899997
Q ss_pred cc-CceeccCCChhHHHHHHHHHHHHHh
Q 004605 135 YI-PGTVFRNDTEPFKKFMTLIVDMMKR 161 (743)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~i~~~l~~ 161 (743)
.. -+-.=|..=..|.+|.+.+++.+..
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgd 172 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKG 172 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 53 4432222224577787777777653
No 39
>PLN02998 beta-glucosidase
Probab=95.85 E-value=0.011 Score=68.39 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=75.0
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecc
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~ 135 (743)
..|+++++.||+||+|+-|+-|-|+..+|. .|.+|=+|....+++|+.+.++||..++--= =|+ +|.||..
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~d---lP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HFD---LPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHH
Confidence 358999999999999999999999999996 5778888999999999999999998765541 243 7999976
Q ss_pred c-CceeccCCChhHHHHHHHHHHHHH
Q 004605 136 I-PGTVFRNDTEPFKKFMTLIVDMMK 160 (743)
Q Consensus 136 ~-p~~~~Rt~d~~y~~~~~~i~~~l~ 160 (743)
. -+-.=|..=..|.+|.+.+++.+.
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fg 179 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFG 179 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhc
Confidence 3 443222223457778777777665
No 40
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=95.73 E-value=0.014 Score=64.03 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=99.2
Q ss_pred EEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEc--eeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccc
Q 004605 44 IISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESY--VFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVA 121 (743)
Q Consensus 44 l~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~y--v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~ 121 (743)
.++.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|+|+ ..+++++.|+++||.|---+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688888877764432 4444555679999875 4599999999999999 89999999999999975222 1
Q ss_pred cccCCCCCCeeecccCceeccCCC-hhHHHHH-HHHHHHHHhccccccCCCcEEEeccccccccccc---------ccCc
Q 004605 122 AEYNYGGIPVWLHYIPGTVFRNDT-EPFKKFM-TLIVDMMKREKLFASQGGPIILAQVENEYGYYES---------FYGE 190 (743)
Q Consensus 122 aEw~~GG~P~WL~~~p~~~~Rt~d-~~y~~~~-~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~---------~~~~ 190 (743)
=|.. ..|.|+...+.. ...+ +..++.+ +.|..++.+ |++-|.|..|=|=||-=.... .+..
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~----y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~ 152 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTR----YKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDA 152 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHH----TTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhH----hccccceEEEEEeeecccCCCccccccCChhhhc
Confidence 1333 689999864110 0001 1234333 333344432 343389999999999632110 0112
Q ss_pred ccHHHHHHHHHHHHhcCCccceEEecc
Q 004605 191 GGKRYALWAAKMAVAQNIGVPWIMCQQ 217 (743)
Q Consensus 191 ~~~~y~~~L~~~~~~~g~~vP~~~~~~ 217 (743)
.+.+|+...-+.|++...++.++.++-
T Consensus 153 lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 153 LGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred ccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 346799999999999888998998874
No 41
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.67 E-value=0.016 Score=66.84 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeec
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~ 134 (743)
..|+++++.||+||+|+.|+-|.|+..+|. +|+++=.|....+++|+.|.++||.-++-.= =| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 348999999999999999999999999997 5667878888999999999999998766541 23 3899997
Q ss_pred cc-CceeccCCChhHHHHHHHHHHHHHh
Q 004605 135 YI-PGTVFRNDTEPFKKFMTLIVDMMKR 161 (743)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~i~~~l~~ 161 (743)
.. -+-.=|..-..|.+|.+.+++.+..
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgd 166 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKD 166 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcC
Confidence 53 4432222234577788887777753
No 42
>PLN02814 beta-glucosidase
Probab=95.64 E-value=0.016 Score=67.32 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecc
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~ 135 (743)
..|+++++.||++|+|+-|+-|.|+-.+|. +|.++-+|....+++|+.|.++||..++--= =|+ +|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~d---lP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HYD---LPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHH
Confidence 358999999999999999999999999996 6788888999999999999999998765541 244 7999986
Q ss_pred c-CceeccCCChhHHHHHHHHHHHHH
Q 004605 136 I-PGTVFRNDTEPFKKFMTLIVDMMK 160 (743)
Q Consensus 136 ~-p~~~~Rt~d~~y~~~~~~i~~~l~ 160 (743)
. -+-.=|..=..|.+|.+.+++.+.
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhC
Confidence 3 443122222456667777776664
No 43
>PLN02849 beta-glucosidase
Probab=95.29 E-value=0.027 Score=65.41 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCC-CeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecc
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSP-GKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~ 135 (743)
..|+++++.||+||+|+-|+-|.|.-.+|.. |.+|=.|....+++|+.|.++||.-++--= =|+ +|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~d---lP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HYD---HPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CCC---CcHHHHH
Confidence 3589999999999999999999999999963 678888889999999999999998765541 243 8999976
Q ss_pred c-CceeccCCChhHHHHHHHHHHHHHh
Q 004605 136 I-PGTVFRNDTEPFKKFMTLIVDMMKR 161 (743)
Q Consensus 136 ~-p~~~~Rt~d~~y~~~~~~i~~~l~~ 161 (743)
. -+-.=|..=..|.+|.+.+++.+..
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgD 177 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGN 177 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 3 4431222224577788777777653
No 44
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.51 E-value=0.22 Score=47.84 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCCEEEEcee----CC-----CCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCe
Q 004605 61 GLVQQAKEGGVNTIESYVF----WN-----GHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPV 131 (743)
Q Consensus 61 ~~l~k~Ka~G~N~V~~yv~----Wn-----~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~ 131 (743)
+-++.+|++|+|+|.++.- |. .|.+.|+- +..-|.+++++|++.||.|++|...- -.|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998532 32 34444543 12256899999999999999998755 44555566899
Q ss_pred eecccCcee-------------ccCCChhHHHHHHHHHHHHH
Q 004605 132 WLHYIPGTV-------------FRNDTEPFKKFMTLIVDMMK 160 (743)
Q Consensus 132 WL~~~p~~~-------------~Rt~d~~y~~~~~~i~~~l~ 160 (743)
|+...++-+ .-+.+.+|++++...++.+.
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~ 120 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREIL 120 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHH
Confidence 998644321 11234567775555444443
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.39 E-value=0.4 Score=51.62 Aligned_cols=121 Identities=26% Similarity=0.279 Sum_probs=71.5
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHH---HcCcEEEEecCcccccccCCCCCCeee
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQ---QARMYMILRIGPFVAAEYNYGGIPVWL 133 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~---~~GL~VIlrpGPyi~aEw~~GG~P~WL 133 (743)
..=.|.|+-+|+.|+|-||.-| |+..--..|.=-=.|+.|+.+.+++|+ ..||+|++-.= | ..=|.- |+-
T Consensus 63 g~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y-SDfwaD---Pak- 135 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y-SDFWAD---PAK- 135 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c-hhhccC---hhh-
Confidence 3457899999999999999844 776544444433456789999998874 58999999872 1 011110 000
Q ss_pred cccCceeccCCChh----HHHHHHHHHHHHHhccccccCCCcEEEeccccccc-ccccccCc
Q 004605 134 HYIPGTVFRNDTEP----FKKFMTLIVDMMKREKLFASQGGPIILAQVENEYG-YYESFYGE 190 (743)
Q Consensus 134 ~~~p~~~~Rt~d~~----y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg-~~~~~~~~ 190 (743)
.+.|....--+-+. -.+|.+..+..|++++ =-+=||||.||-. .+-+..|+
T Consensus 136 Q~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eG------i~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 136 QKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEG------ILPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred cCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcC------CCccceEeccccCCceeccCCC
Confidence 00111100001111 1117777787777543 3566999999983 34344453
No 46
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.18 E-value=0.073 Score=60.67 Aligned_cols=96 Identities=14% Similarity=0.243 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCe--eeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeec
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGK--YYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~--~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~ 134 (743)
..++++++.||+||+|+.|+-|.|+..-|..+. .+=.|-...+++++.|.++|+.-++--= =|+ +|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHh
Confidence 357899999999999999999999999996654 7777888999999999999999776541 244 799998
Q ss_pred cc-CceeccCCChhHHHHHHHHHHHHH
Q 004605 135 YI-PGTVFRNDTEPFKKFMTLIVDMMK 160 (743)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~i~~~l~ 160 (743)
+. -+-.=|..=..|.+|.+.++....
T Consensus 131 ~~ygGW~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWENRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCccCHHHHHHHHHHHHHHHHHhc
Confidence 75 343233333567777777777665
No 47
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=93.80 E-value=0.34 Score=52.77 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=84.4
Q ss_pred CCEEE--EceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhH
Q 004605 71 VNTIE--SYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPF 148 (743)
Q Consensus 71 ~N~V~--~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y 148 (743)
||.|. .-.=|+..||++|.|+|+ --++..+.|+++||.+- -=+-| |-+ -.|.|+..+. -+.+..
T Consensus 58 ~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~~~~ 123 (345)
T COG3693 58 CNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSKEAL 123 (345)
T ss_pred hcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cChHHH
Confidence 55443 344599999999999999 57789999999999653 22222 433 6789987532 123344
Q ss_pred HH-HHHHHHHHHHhccccccCCCcEEEecccccccc----cc---cccCcccHHHHHHHHHHHHhcCCccceEEecc
Q 004605 149 KK-FMTLIVDMMKREKLFASQGGPIILAQVENEYGY----YE---SFYGEGGKRYALWAAKMAVAQNIGVPWIMCQQ 217 (743)
Q Consensus 149 ~~-~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~----~~---~~~~~~~~~y~~~L~~~~~~~g~~vP~~~~~~ 217 (743)
.+ .-+.|...+.+ |+ |-|+.|-|=||-=. +. +..+..+.+|+++.-+.||+.+.+--++.|+-
T Consensus 124 ~~~~e~hI~tV~~r----Yk--g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY 194 (345)
T COG3693 124 AKMVEEHIKTVVGR----YK--GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDY 194 (345)
T ss_pred HHHHHHHHHHHHHh----cc--CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecc
Confidence 44 22333444432 23 45999999999632 21 11223578999999999999888888887764
No 48
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=91.50 E-value=2.1 Score=49.77 Aligned_cols=148 Identities=18% Similarity=0.237 Sum_probs=92.7
Q ss_pred CcEEECCEEeEEEEEEeeC-----CCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHH
Q 004605 33 RSLIINGRRELIISAAIHY-----PRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQ 107 (743)
Q Consensus 33 ~~f~~dGkp~~l~sG~~Hy-----~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~ 107 (743)
-.|.||+.|.++.++.--+ .|..-+.-+-.|+-++++|+|++++ |. -|.| .-+.|.++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GGvY------Esd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GGVY------ESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Cccc------cchhHHHHhhh
Confidence 5689999999998886543 3456666777899999999999998 43 2444 34599999999
Q ss_pred cCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHH-HHHHHHHHHHhccccccCCCcEEEecccccccc--c
Q 004605 108 ARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK-FMTLIVDMMKREKLFASQGGPIILAQVENEYGY--Y 184 (743)
Q Consensus 108 ~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~-~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~--~ 184 (743)
.||.|---- =+.||-.. .+..|+. -.+++.-.+++ .+.++.||.+.=.||=-. .
T Consensus 394 lGilVWQD~-MFACAlYP------------------t~~eFl~sv~eEV~yn~~R----ls~HpSviIfsgNNENEaAl~ 450 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALYP------------------TNDEFLSSVREEVRYNAMR----LSHHPSVIIFSGNNENEAALV 450 (867)
T ss_pred ccceehhhh-HHHhhccc------------------CcHHHHHHHHHHHHHHHHh----hccCCeEEEEeCCCccHHHHH
Confidence 999874211 13354432 3455665 22333333332 478899999987666311 1
Q ss_pred ccccCc-------ccHH----HHHHHHHHHHhcCCccceEEecc
Q 004605 185 ESFYGE-------GGKR----YALWAAKMAVAQNIGVPWIMCQQ 217 (743)
Q Consensus 185 ~~~~~~-------~~~~----y~~~L~~~~~~~g~~vP~~~~~~ 217 (743)
+..|+. .-+. |.+-+++++..-.-.+|+++...
T Consensus 451 ~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 451 QNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred hhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 111221 1223 44446666666566789888654
No 49
>smart00642 Aamy Alpha-amylase domain.
Probab=91.39 E-value=0.5 Score=47.01 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=43.7
Q ss_pred hHHHHHHHHHcCCCEEEEceeCCCCC-------CCCCee-----eeccchhHHHHHHHHHHcCcEEEEecCcccccc
Q 004605 59 WPGLVQQAKEGGVNTIESYVFWNGHE-------LSPGKY-----YFGGRFNLVKFIKIIQQARMYMILRIGPFVAAE 123 (743)
Q Consensus 59 W~~~l~k~Ka~G~N~V~~yv~Wn~hE-------p~~G~~-----dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aE 123 (743)
+.+.|..+|++|+|+|.+-=++.... -.+..| .|....++.++++.|+++||.||+-.=|-=++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 44566679999999998753322221 122222 455668999999999999999998875433333
No 50
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=91.27 E-value=20 Score=40.59 Aligned_cols=248 Identities=10% Similarity=0.091 Sum_probs=121.7
Q ss_pred CCCCCCCChHHHHHHHHHcCCCEEEEc-------eeCCCCCCCCCeeeeccchh-HHHHHHHHHHcCcEEEEecCccccc
Q 004605 51 YPRSVPGMWPGLVQQAKEGGVNTIESY-------VFWNGHELSPGKYYFGGRFN-LVKFIKIIQQARMYMILRIGPFVAA 122 (743)
Q Consensus 51 y~R~~~~~W~~~l~k~Ka~G~N~V~~y-------v~Wn~hEp~~G~~dF~g~~d-l~~fl~la~~~GL~VIlrpGPyi~a 122 (743)
+.+..++.|. +.+|++|+.-|-.- -.|.-.-..-..-+-.-.+| |.+|.+.|+++||++-+ |...
T Consensus 78 p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~S~ 150 (384)
T smart00812 78 AEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YHSL 150 (384)
T ss_pred chhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----EcCH
Confidence 3345555555 57889999865421 12433222111111111344 45677999999997766 4443
Q ss_pred -ccCCCCCCeeecccCceeccCCChhHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcccHHHHHHHHH
Q 004605 123 -EYNYGGIPVWLHYIPGTVFRNDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAK 201 (743)
Q Consensus 123 -Ew~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~ 201 (743)
+|.. |.|....+.-..+.+.+.|.+|++...++|++ | .++=||-|+|- +-..+.. ...--++.|.+
T Consensus 151 ~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~E--L-it~Ygpd~lWf-D~~~~~~------~~~~~~~~l~~ 217 (384)
T smart00812 151 FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRE--L-VTRYKPDLLWF-DGGWEAP------DDYWRSKEFLA 217 (384)
T ss_pred HHhCC---CccccccccccccccchhHHHHHHHHHHHHHH--H-HhcCCCceEEE-eCCCCCc------cchhcHHHHHH
Confidence 6753 44432111111233456777776555555553 2 23435556652 2222110 11112455666
Q ss_pred HHHhcCCcc-ceEEecccCCCccccccCCCCc--c-CccCCC-CCCCCce-eeccCCcccCccCC-CCCCCChHHHHHHH
Q 004605 202 MAVAQNIGV-PWIMCQQFDTPDPVINTCNSFY--C-DQFTPH-SPSMPKI-WTENWPGWFKTFGG-RDPHRPSEDIAFSV 274 (743)
Q Consensus 202 ~~~~~g~~v-P~~~~~~~~~~~~~~~~~ng~~--~-~~~~~~-~p~~P~~-~~E~~~Gwf~~wG~-~~~~~~~~~~~~~~ 274 (743)
++++...+. -+++++.... .... .|.+ + +...+. ....|-- |+=.-.+|+-+-++ ....++++++...+
T Consensus 218 ~~~~~qP~~~~vvvn~R~~~---~~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~l 293 (384)
T smart00812 218 WLYNLSPVKDTVVVNDRWGG---TGCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRDL 293 (384)
T ss_pred HHHHhCCCCceEEEEccccc---cCCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHHH
Confidence 777654443 1133333210 0000 0111 1 111110 0111211 11111245555443 23467899999888
Q ss_pred HHHHhcCCceeeeeeeccCCCCCCCCCCCcccccCCCCCCcCCCCCCCCchhHHHHHHHHHHhhhhhccccCC
Q 004605 275 ARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKLCEHALLNGE 347 (743)
Q Consensus 275 ~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~~TSYDY~Api~E~G~~~tpky~~lr~l~~~~~~~~~~l~~~~ 347 (743)
.+..++|++++ +=- +-+.+|.+....-..|++++..++..++....+.
T Consensus 294 ~~~Vsk~GnlL---LNV----------------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr 341 (384)
T smart00812 294 VDIVSKGGNLL---LNV----------------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTR 341 (384)
T ss_pred hhhcCCCceEE---Ecc----------------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCC
Confidence 88888888742 211 2235687766677899999999998777654443
No 51
>PRK09936 hypothetical protein; Provisional
Probab=90.46 E-value=0.42 Score=51.49 Aligned_cols=58 Identities=28% Similarity=0.422 Sum_probs=47.3
Q ss_pred CCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccc-hhHHHHHHHHHHcCcEEEEec
Q 004605 53 RSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR-FNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 53 R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~-~dl~~fl~la~~~GL~VIlrp 116 (743)
+++++.|+++++.+|+.||+|+= |-|.-.-.. ||.+. -+|.+.++.|++.||.|++.-
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEE--EEeeeccCC----CcccchHHHHHHHHHHHHcCCEEEEcc
Confidence 68999999999999999999874 456544111 88764 599999999999999998764
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=89.52 E-value=5.1 Score=48.03 Aligned_cols=165 Identities=17% Similarity=0.121 Sum_probs=85.5
Q ss_pred EEeeCCCCCC-CChHH---HH-HHHHHcCCCEEEE-ceeCCCCC----CCCC-----eeeeccchhHHHHHHHHHHcCcE
Q 004605 47 AAIHYPRSVP-GMWPG---LV-QQAKEGGVNTIES-YVFWNGHE----LSPG-----KYYFGGRFNLVKFIKIIQQARMY 111 (743)
Q Consensus 47 G~~Hy~R~~~-~~W~~---~l-~k~Ka~G~N~V~~-yv~Wn~hE----p~~G-----~~dF~g~~dl~~fl~la~~~GL~ 111 (743)
=|+|..-..+ -.++. +| .-+|++|+|+|.. .|+..-.. -.+- .-.|.+..||.+|++.|++.||.
T Consensus 142 Ye~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 142 YELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred EEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 3566543322 23443 43 6679999999997 66543111 0000 01345567999999999999999
Q ss_pred EEEecCccccc-----ccCCCCCCeeecccCc---------eeccCCChhHHHHHHHHHHHHHh----ccccccCCCcEE
Q 004605 112 MILRIGPFVAA-----EYNYGGIPVWLHYIPG---------TVFRNDTEPFKKFMTLIVDMMKR----EKLFASQGGPII 173 (743)
Q Consensus 112 VIlrpGPyi~a-----Ew~~GG~P~WL~~~p~---------~~~Rt~d~~y~~~~~~i~~~l~~----~~~~~~~gGpII 173 (743)
|||-.=+==++ -+...|.|.|....+. ..+-..+|.-++|+...+....+ .++...-=..++
T Consensus 222 VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~ 301 (613)
T TIGR01515 222 VILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASML 301 (613)
T ss_pred EEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhh
Confidence 99875331111 1122233444322110 11233456655655554444332 123222112233
Q ss_pred Eecc--------cccccccccccCcccHHHHHHHHHHHHhcCCccceEE
Q 004605 174 LAQV--------ENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIM 214 (743)
Q Consensus 174 ~~QI--------ENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vP~~~ 214 (743)
.++- .||++.- ....+..|++.+.+.+++...++-++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~---~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 302 YLDYSRDEGEWSPNEDGGR---ENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred hhccccccccccccccCCc---CChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 2221 2444321 012356899999999988766665554
No 53
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=89.33 E-value=0.69 Score=50.65 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=66.6
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeC-------CCCCCC-------CCe-eeeccchhHHHHHHHHHHcCcEEEEecCcc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFW-------NGHELS-------PGK-YYFGGRFNLVKFIKIIQQARMYMILRIGPF 119 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~W-------n~hEp~-------~G~-~dF~g~~dl~~fl~la~~~GL~VIlrpGPy 119 (743)
.++.-++.|++++++|+|+|=.-|-+ +-.+|. +|. -.|+ -|..+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 56677889999999999999755432 112221 111 0133 79999999999999999776 11
Q ss_pred cccccC----CCCCCeeec-ccCceeccC----C-----C---hhHHHHHHHHHHHHHhccccccCCCcEEEecccc
Q 004605 120 VAAEYN----YGGIPVWLH-YIPGTVFRN----D-----T---EPFKKFMTLIVDMMKREKLFASQGGPIILAQVEN 179 (743)
Q Consensus 120 i~aEw~----~GG~P~WL~-~~p~~~~Rt----~-----d---~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIEN 179 (743)
-...-. .-..|.|+. +.++..... . | |.-++|+..++..|.+ .+ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 111001 113578876 345432222 1 1 3334477777766653 22 366788873
No 54
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=88.94 E-value=1.9 Score=50.37 Aligned_cols=332 Identities=16% Similarity=0.228 Sum_probs=144.9
Q ss_pred EEeEEEEEEeeC------CCCCCCChHHHHHHH---HHcCCCEEEEcee--------CCCCCCCCCeee---ecc-c---
Q 004605 40 RRELIISAAIHY------PRSVPGMWPGLVQQA---KEGGVNTIESYVF--------WNGHELSPGKYY---FGG-R--- 95 (743)
Q Consensus 40 kp~~l~sG~~Hy------~R~~~~~W~~~l~k~---Ka~G~N~V~~yv~--------Wn~hEp~~G~~d---F~g-~--- 95 (743)
|++.=++|++=- .+.+++.=+..|+.+ +.+|++.+|+.+- +.+-+ .|+.|+ |+= .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 445557777632 234444333344443 5589999998874 23222 233222 221 1
Q ss_pred hhHHHHHHHHHHc--CcEEEEecCcccccccCCCCCCeeecccCce----eccC-CChhHHH-HHHHHHHHHHhcccccc
Q 004605 96 FNLVKFIKIIQQA--RMYMILRIGPFVAAEYNYGGIPVWLHYIPGT----VFRN-DTEPFKK-FMTLIVDMMKREKLFAS 167 (743)
Q Consensus 96 ~dl~~fl~la~~~--GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~----~~Rt-~d~~y~~-~~~~i~~~l~~~~~~~~ 167 (743)
..+..+|+.|++. +|+++.-| |. .|.|+.....+ .++. .++.|.+ |.+.+++.|.. +.+
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~a---Y~~ 219 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQA---YKK 219 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHH---HHC
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHH---HHH
Confidence 2234677877663 58888887 65 89999764322 2442 2334543 65555655543 124
Q ss_pred CCCcEEEeccccccccc-------cc-ccC-cccHHHHH-HHHHHHHhcCC--ccceEEeccc--CCCc---ccccc---
Q 004605 168 QGGPIILAQVENEYGYY-------ES-FYG-EGGKRYAL-WAAKMAVAQNI--GVPWIMCQQF--DTPD---PVINT--- 227 (743)
Q Consensus 168 ~gGpII~~QIENEyg~~-------~~-~~~-~~~~~y~~-~L~~~~~~~g~--~vP~~~~~~~--~~~~---~~~~~--- 227 (743)
+|=+|-++-+.||-... .+ .+. +..++|++ .|.-.+++.++ ++-+++.+.. ..++ .++..
T Consensus 220 ~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A 299 (496)
T PF02055_consen 220 EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEA 299 (496)
T ss_dssp TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHH
T ss_pred CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhh
Confidence 55589999999996531 10 111 12356665 47778888876 7766665532 2221 11210
Q ss_pred ---CC--CCcc---Ccc-------CCCCCCCCceeeccCCcccCccCCCCCC---CChHHHHHHHHHHHhcCCceeeeee
Q 004605 228 ---CN--SFYC---DQF-------TPHSPSMPKIWTENWPGWFKTFGGRDPH---RPSEDIAFSVARFFQKGGSVHNYYM 289 (743)
Q Consensus 228 ---~n--g~~~---~~~-------~~~~p~~P~~~~E~~~Gwf~~wG~~~~~---~~~~~~~~~~~~~l~~g~s~~n~YM 289 (743)
+. +++| +.. ....|++.++.||-..|.- .|+..... ..++..+..+..-|.++++ ++-+
T Consensus 300 ~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw~~ 376 (496)
T PF02055_consen 300 AKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GWID 376 (496)
T ss_dssp HTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EEEE
T ss_pred HhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--eeee
Confidence 01 2222 111 1346889999999865531 12211111 1123344444444566644 2222
Q ss_pred ------eccCCCCCCC-CCCCcccccCCCCCCcCCCCCCCCchhHHHHHHHHHHhhhhhccccCCccccCCCCCccceee
Q 004605 290 ------YHGGTNFGRT-AGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKLCEHALLNGERSNLSLGSSQEADVY 362 (743)
Q Consensus 290 ------~hGGTNfG~~-~g~~~~~TSYDY~Api~E~G~~~tpky~~lr~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y 362 (743)
-.||-|++.- ..++..+.. +. +|. ..+|.|+.|..+.+|++.-...+... ........+...|
T Consensus 377 WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~PGa~RI~st---~~~~~~~l~~vAF 446 (496)
T PF02055_consen 377 WNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVRPGAVRIGST---SSSSDSGLEAVAF 446 (496)
T ss_dssp EESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-TT-EEEEEE---ESSSTTTEEEEEE
T ss_pred eeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccCCCCEEEEee---ccCCCCceeEEEE
Confidence 2588887542 122221111 10 111 24789999999888876432222110 0001112334445
Q ss_pred ecCCCceeeeccccCCCCc-ceEEEec-------eeeecCCcee
Q 004605 363 ADSSGACAAFLANMDDKND-KTVVFRN-------VSYHLPAWSV 398 (743)
Q Consensus 363 ~~~~~~~~~fl~n~~~~~~-~~v~f~~-------~~~~~p~~sv 398 (743)
....|..+..+.|..+... .+|++.+ ..+.||+.|+
T Consensus 447 ~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~ 490 (496)
T PF02055_consen 447 LNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSI 490 (496)
T ss_dssp EETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTE
T ss_pred ECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCce
Confidence 5555555555555543332 2455542 2456665543
No 55
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=86.62 E-value=0.75 Score=51.38 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=48.6
Q ss_pred EEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCccc
Q 004605 45 ISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFV 120 (743)
Q Consensus 45 ~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi 120 (743)
++=++++...+.+.....|++|++.|+..|=| ++|.|+...=+. ...+..++++|+++||.||+-+.|=+
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHH
Confidence 45567777778888999999999999999999 999999633221 24788999999999999999997744
No 56
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=84.93 E-value=1.4 Score=50.90 Aligned_cols=61 Identities=10% Similarity=0.225 Sum_probs=42.6
Q ss_pred CCChH---HHHHHHHHcCCCEEEEc-eeCCC-----CCCCCCe-e-------------eeccchhHHHHHHHHHHcCcEE
Q 004605 56 PGMWP---GLVQQAKEGGVNTIESY-VFWNG-----HELSPGK-Y-------------YFGGRFNLVKFIKIIQQARMYM 112 (743)
Q Consensus 56 ~~~W~---~~l~k~Ka~G~N~V~~y-v~Wn~-----hEp~~G~-~-------------dF~g~~dl~~fl~la~~~GL~V 112 (743)
.+.|. +.|.-+|++|+++|-+- ++-+. |--.+-- | .|....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35575 56777899999999863 54332 2222211 1 2335679999999999999999
Q ss_pred EEec
Q 004605 113 ILRI 116 (743)
Q Consensus 113 Ilrp 116 (743)
|+-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9876
No 57
>PRK12568 glycogen branching enzyme; Provisional
Probab=84.78 E-value=13 Score=45.54 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCEEEE-cee-------CCCC-----CCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCc
Q 004605 62 LVQQAKEGGVNTIES-YVF-------WNGH-----ELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (743)
Q Consensus 62 ~l~k~Ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGP 118 (743)
.|.-+|++|+|+|+. .|+ |.+. .|.+ .|....++.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 357789999999986 342 4321 2222 4556679999999999999999987544
No 58
>PRK14706 glycogen branching enzyme; Provisional
Probab=84.37 E-value=15 Score=44.25 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=74.6
Q ss_pred HHHHHcCCCEEEE-cee-------CCCC-----CCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccc-----cccC
Q 004605 64 QQAKEGGVNTIES-YVF-------WNGH-----ELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVA-----AEYN 125 (743)
Q Consensus 64 ~k~Ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~-----aEw~ 125 (743)
.-+|++|+|+|+. .|. |.+. .|.+ .|....||.+|++.|+++||.|||-.=|==+ +.+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~ 251 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAH 251 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhc
Confidence 5689999999995 231 3321 1111 2345679999999999999999986422111 1112
Q ss_pred CCCCCeeecccC--c-------eeccCCChhHHHHHHHHHHH-HHh---ccccccCCCcEE-------Eecccccccccc
Q 004605 126 YGGIPVWLHYIP--G-------TVFRNDTEPFKKFMTLIVDM-MKR---EKLFASQGGPII-------LAQVENEYGYYE 185 (743)
Q Consensus 126 ~GG~P~WL~~~p--~-------~~~Rt~d~~y~~~~~~i~~~-l~~---~~~~~~~gGpII-------~~QIENEyg~~~ 185 (743)
.-|.|.+-..++ + ..+...++.-++|+-..+.. |.+ .+++..---.++ -| +.|+||...
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~-~~~~~gg~~ 330 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEW-VPNIHGGRE 330 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccc-cccccCCcc
Confidence 223343322111 1 11233345444433322222 111 122211111111 12 668887532
Q ss_pred cccCcccHHHHHHHHHHHHhcCCccceEE
Q 004605 186 SFYGEGGKRYALWAAKMAVAQNIGVPWIM 214 (743)
Q Consensus 186 ~~~~~~~~~y~~~L~~~~~~~g~~vP~~~ 214 (743)
...+..|+++|.+.+++...++-++.
T Consensus 331 ---n~~a~~fl~~ln~~v~~~~p~~~~iA 356 (639)
T PRK14706 331 ---NLEAIAFLKRLNEVTHHMAPGCMMIA 356 (639)
T ss_pred ---cHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 23467899999999998765554443
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=83.54 E-value=18 Score=38.49 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-EecC
Q 004605 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIG 117 (743)
Q Consensus 56 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VI-lrpG 117 (743)
..-|++.|+.++++|++.|+.-+ +..| ..+...+++ ..++..+.+++++.||.|. +.++
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~ 74 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLS 74 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecC
Confidence 46799999999999999999942 2221 223344554 3578899999999999975 4443
No 60
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.87 E-value=1.6 Score=45.96 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEceeCCCC----CCCCCee-e----eccchhHHHHHHHHHHcCcEEEEecC
Q 004605 60 PGLVQQAKEGGVNTIESYVFWNGH----ELSPGKY-Y----FGGRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~yv~Wn~h----Ep~~G~~-d----F~g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
.+.|.-+|++|+|+|..-=++... --.+--| + |....+|.++++.|++.||+|||-.=
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 356888999999999975322211 1111111 1 23457999999999999999997663
No 61
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=81.80 E-value=11 Score=41.71 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=87.0
Q ss_pred CCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHH---HcCcEEEEecCcccccccCCCCCC
Q 004605 54 SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQ---QARMYMILRIGPFVAAEYNYGGIP 130 (743)
Q Consensus 54 ~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~---~~GL~VIlrpGPyi~aEw~~GG~P 130 (743)
..|+..+..++.+|+.|++.--.|-.|. .|.+-|++-++..- +.+|...|. +.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 4677889999999999999999988884 45556766665542 344544443 12223311
Q ss_pred eeecccCceecc---CCChhHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcccHHHHHHHHHHHHhcC
Q 004605 131 VWLHYIPGTVFR---NDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQN 207 (743)
Q Consensus 131 ~WL~~~p~~~~R---t~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~g 207 (743)
.|-.....+.+- .....+.++++.|++.++...++--+|-||+++=--.++ .+-+++++.+++.++++|
T Consensus 117 ~w~g~~~~~l~~q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~~G 188 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKEAG 188 (345)
T ss_pred ccCCCCccccccccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHHcC
Confidence 122222222221 122457888899999998744544578899987322222 145789999999999999
Q ss_pred CccceEEe
Q 004605 208 IGVPWIMC 215 (743)
Q Consensus 208 ~~vP~~~~ 215 (743)
+.-+.+..
T Consensus 189 ~~giyii~ 196 (345)
T PF14307_consen 189 LPGIYIIA 196 (345)
T ss_pred CCceEEEE
Confidence 98665543
No 62
>PRK12313 glycogen branching enzyme; Provisional
Probab=80.70 E-value=3 Score=50.07 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=37.7
Q ss_pred HHHHHHcCCCEEEE-cee-------CCC-----CCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 63 VQQAKEGGVNTIES-YVF-------WNG-----HELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 63 l~k~Ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
|.-+|++|+|+|.. .|+ |.+ ..+.+ .|.+..||.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58889999999995 342 321 11111 35567899999999999999999874
No 63
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=80.68 E-value=1.3 Score=50.57 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=99.2
Q ss_pred cEEECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCC-CC---CCCeeee-ccchhHHHHHHHHHHc
Q 004605 34 SLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGH-EL---SPGKYYF-GGRFNLVKFIKIIQQA 108 (743)
Q Consensus 34 ~f~~dGkp~~l~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~h-Ep---~~G~~dF-~g~~dl~~fl~la~~~ 108 (743)
.|.++++++..++..--+.++..++-+++|+-|+.+|+++++.. -+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 47888888877777666777777777889999999999999994 344 55 3332222 2345788999999999
Q ss_pred CcEEEEecCcccccccCCCCCC---eeec-ccCceeccC--CChhHHHHHHHHHHHHHhccccccCCCcEEEeccccccc
Q 004605 109 RMYMILRIGPFVAAEYNYGGIP---VWLH-YIPGTVFRN--DTEPFKKFMTLIVDMMKREKLFASQGGPIILAQVENEYG 182 (743)
Q Consensus 109 GL~VIlrpGPyi~aEw~~GG~P---~WL~-~~p~~~~Rt--~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg 182 (743)
+|+|+++- |.+-=.+||.= .|-. +.|+-.++. .-.+|.+|...+++ + |+.++.|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk---~----yk~~ptI~gw~l~Ne-- 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVK---P----YKLDPTIAGWALRNE-- 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhh---h----hccChHHHHHHhcCC--
Confidence 99998764 33222345532 2331 123321221 11234445555443 2 467889999999999
Q ss_pred ccccccCcccHHHHHHHHHHHH
Q 004605 183 YYESFYGEGGKRYALWAAKMAV 204 (743)
Q Consensus 183 ~~~~~~~~~~~~y~~~L~~~~~ 204 (743)
.... -...+..+++|+++|+-
T Consensus 148 ~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred cccc-ccCChhHHHHHHHHHHH
Confidence 2210 13356789999999964
No 64
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=79.92 E-value=2.6 Score=51.47 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHcCCCEEEEc-ee-------CCCCCCCCC--eeeeccchhHHHHHHHHHHcCcEEEEecCc
Q 004605 57 GMWPGLVQQAKEGGVNTIESY-VF-------WNGHELSPG--KYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~y-v~-------Wn~hEp~~G--~~dF~g~~dl~~fl~la~~~GL~VIlrpGP 118 (743)
+.|++.|..+|++|+|+|+.= |+ |.++-..-= .-.|....+|.+|++.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 347888999999999999962 21 433211000 113555679999999999999999987543
No 65
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=79.59 E-value=2.7 Score=49.55 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=40.3
Q ss_pred hHHHHHHHHHcCCCEEEEc-eeCCC---CCCCCCee-----eeccchhHHHHHHHHHHcCcEEEEec
Q 004605 59 WPGLVQQAKEGGVNTIESY-VFWNG---HELSPGKY-----YFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 59 W~~~l~k~Ka~G~N~V~~y-v~Wn~---hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
+.++|.-+|++|+|+|-+- ++-+- |--.+.-| .|....||.++++.|+++||+|||-.
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5678889999999999863 43221 11111111 24456799999999999999999865
No 66
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=76.88 E-value=3.9 Score=48.24 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCEEEE-cee-------CCCC-----CCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 61 GLVQQAKEGGVNTIES-YVF-------WNGH-----ELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 61 ~~l~k~Ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
++|.-+|++|+|+|.. .|+ |.+. .+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999986 342 3221 2222 34566899999999999999999874
No 67
>PRK05402 glycogen branching enzyme; Provisional
Probab=76.56 E-value=4.8 Score=49.22 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHHHHcCCCEEEE-cee-------CCC-----CCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 64 QQAKEGGVNTIES-YVF-------WNG-----HELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 64 ~k~Ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.-+|++|+|+|.. .|+ |.+ ..+.+ .|.+..||.+|++.|+++||.|||-.
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~---~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS---RFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 6679999999996 343 221 11111 34566899999999999999999874
No 68
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=76.44 E-value=4.6 Score=48.29 Aligned_cols=53 Identities=25% Similarity=0.311 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCEEEE-ce-------eCCCC-----CCCCCeeeeccchhHHHHHHHHHHcCcEEEEe
Q 004605 60 PGLVQQAKEGGVNTIES-YV-------FWNGH-----ELSPGKYYFGGRFNLVKFIKIIQQARMYMILR 115 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~-yv-------~Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~VIlr 115 (743)
.+.|.-+|+||+++|+. .| -|.+- -|+. .|..-.||.+||+.|+++||-|||-
T Consensus 168 ~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 168 IELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 46788899999999996 22 14432 1111 2334579999999999999999985
No 69
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=75.17 E-value=21 Score=37.83 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHc-CcEEEE
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQA-RMYMIL 114 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~-GL~VIl 114 (743)
.-|++.|+.+|++|++.|++-+........ ......+++++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 679999999999999999985532211111 111346899999999999 666554
No 70
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=74.79 E-value=5.9 Score=46.85 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=39.9
Q ss_pred hHHHHHHHHHcCCCEEEE-ceeCCCCCCC-CCee----------eeccchhHHHHHHHHHHcCcEEEEec
Q 004605 59 WPGLVQQAKEGGVNTIES-YVFWNGHELS-PGKY----------YFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 59 W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~-~G~~----------dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
+.++|..+|++|+++|-+ .++-+ |. ..-| +|....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 457888999999999986 34421 11 1112 23456799999999999999999765
No 71
>PLN02960 alpha-amylase
Probab=74.28 E-value=6 Score=48.90 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCEEEE-cee-------CCCCCCCC--CeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 61 GLVQQAKEGGVNTIES-YVF-------WNGHELSP--GKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 61 ~~l~k~Ka~G~N~V~~-yv~-------Wn~hEp~~--G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
+.|.-+|++|+|+|+. .|+ |.+.-..- =.-.|....+|.+|++.|+++||.|||-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4688999999999996 343 43221100 00134456799999999999999999875
No 72
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=73.88 E-value=5.7 Score=35.05 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=34.5
Q ss_pred CeEEecccceEEEEEECCEEEEEEeCCCCCCCceEeecccc-CCCccEEEEEEeccCcc
Q 004605 499 PVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISL-KAGKNEIALLSMTVGLQ 556 (743)
Q Consensus 499 ~~L~i~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILven~Gr~ 556 (743)
..|++.+-...++-||||+++|+....+ .+.+ .+ ..|.++|.+ ++..|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 4566555566999999999998866432 1222 34 678899987 7777764
No 73
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=73.47 E-value=5.6 Score=47.08 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHcCCCEEEEc-eeCCCCCCCCCee--------eeccc----hhHHHHHHHHHHcCcEEEEecCcccccc
Q 004605 57 GMWPGLVQQAKEGGVNTIESY-VFWNGHELSPGKY--------YFGGR----FNLVKFIKIIQQARMYMILRIGPFVAAE 123 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~y-v~Wn~hEp~~G~~--------dF~g~----~dl~~fl~la~~~GL~VIlrpGPyi~aE 123 (743)
+.=++.|..|+.+.||.|+.| ..|.||.|-|+.= |+.++ .-+...|+.|++.|+.++.=--=|.+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456778999999999999999 7899999987644 12222 3678999999999999985443232222
Q ss_pred c--CCCCCCeeec
Q 004605 124 Y--NYGGIPVWLH 134 (743)
Q Consensus 124 w--~~GG~P~WL~ 134 (743)
. ..|=.|.|-.
T Consensus 198 ~~~~~gv~~eW~l 210 (559)
T PF13199_consen 198 NYEEDGVSPEWGL 210 (559)
T ss_dssp T--S--SS-GGBE
T ss_pred CcccccCCchhhh
Confidence 2 3566788875
No 74
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=73.25 E-value=4.8 Score=47.44 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCCEEEEc-eeCC---CCCCCCCee-----eeccchhHHHHHHHHHHcCcEEEEe
Q 004605 59 WPGLVQQAKEGGVNTIESY-VFWN---GHELSPGKY-----YFGGRFNLVKFIKIIQQARMYMILR 115 (743)
Q Consensus 59 W~~~l~k~Ka~G~N~V~~y-v~Wn---~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~VIlr 115 (743)
+.+.|.-+|++|+|+|-.- |+=+ -|--..-.| .|.+..|+.++++.|++.||+|||-
T Consensus 30 i~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 30 LTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 6678899999999999863 4311 110000011 2445679999999999999999985
No 75
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.25 E-value=11 Score=40.42 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=61.3
Q ss_pred eEEEeCCcEEECCEEeEEEEEE--eeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeec--cchhHHHHH
Q 004605 27 NVTYDSRSLIINGRRELIISAA--IHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG--GRFNLVKFI 102 (743)
Q Consensus 27 ~v~~d~~~f~~dGkp~~l~sG~--~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~--g~~dl~~fl 102 (743)
.|.+ +.+.+.+.+++++.|= +| +++.-.+..+++|++|+..++.|.+=+...| +.|. |...+..+-
T Consensus 15 ~~~~--~~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l~ 84 (266)
T PRK13398 15 IVKV--GDVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKILK 84 (266)
T ss_pred EEEE--CCEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHHH
Confidence 3444 3367776788888883 33 5677788889999999999999988744443 3565 578899999
Q ss_pred HHHHHcCcEEEEec
Q 004605 103 KIIQQARMYMILRI 116 (743)
Q Consensus 103 ~la~~~GL~VIlrp 116 (743)
+.|++.||.++-.|
T Consensus 85 ~~~~~~Gl~~~te~ 98 (266)
T PRK13398 85 EVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999998877
No 76
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=72.03 E-value=7.5 Score=42.89 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=58.8
Q ss_pred EEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCe-eeeccchhHHHHHHHHHHcCcEEEEecCcccccc
Q 004605 45 ISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGK-YYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAE 123 (743)
Q Consensus 45 ~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aE 123 (743)
++=++.+.|.+.+.=..-|++|...|+.-|=| ++|.|.+.. --|. -+.++++.|+++||+||+-.-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 55678888999888899999999999999988 999998842 1122 577889999999999999998866544
No 77
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=71.72 E-value=6.9 Score=46.79 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCEEEE-cee---------------CCCCC-----CCCCeee----ec--cchhHHHHHHHHHHcCcEEE
Q 004605 61 GLVQQAKEGGVNTIES-YVF---------------WNGHE-----LSPGKYY----FG--GRFNLVKFIKIIQQARMYMI 113 (743)
Q Consensus 61 ~~l~k~Ka~G~N~V~~-yv~---------------Wn~hE-----p~~G~~d----F~--g~~dl~~fl~la~~~GL~VI 113 (743)
+.|.-+|++|+|+|.. .|+ |.+.- |. +.|- |- ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 343 33321 11 0110 10 13689999999999999999
Q ss_pred Eec
Q 004605 114 LRI 116 (743)
Q Consensus 114 lrp 116 (743)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 875
No 78
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=70.65 E-value=65 Score=36.49 Aligned_cols=52 Identities=10% Similarity=-0.006 Sum_probs=36.7
Q ss_pred CCCChHHHHHHHHHcCCCEEEEc----eeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESY----VFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~y----v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VI 113 (743)
++....+++++++++|+..|+.. ++|..-..+ -..++.++-+++++.||.|.
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~ 85 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVP 85 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEE
Confidence 44567899999999999999964 122111110 02357889999999999976
No 79
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=70.56 E-value=15 Score=30.24 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=43.5
Q ss_pred CCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 004605 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 56 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 5567888999999999999999732 333 58887765 5678999999999988754
No 80
>PRK10785 maltodextrin glucosidase; Provisional
Probab=70.24 E-value=8.9 Score=45.84 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEE-ceeCC--CCCCCCCee-----eeccchhHHHHHHHHHHcCcEEEEec
Q 004605 60 PGLVQQAKEGGVNTIES-YVFWN--GHELSPGKY-----YFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~-yv~Wn--~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.+.|.-+|++|+|+|-. .||=+ .|--...-| .|.+..||.+|++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35688889999999996 45522 221111111 34456799999999999999999754
No 81
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=70.09 E-value=9 Score=40.96 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=46.1
Q ss_pred cccchhhccCC---CCCCcEEEEEEeeecCCchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeC
Q 004605 461 KSGFVDHINTT---KDTTDYLWYTTSIIVNENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASG 524 (743)
Q Consensus 461 ~p~~~Eql~~t---~d~~Gyl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~d~~~vfvng~~~G~~~~ 524 (743)
.|..+-++++. +|..|.+||+.++.++.+.. ...++...|++.+++-.|.|||||.-+=...+
T Consensus 70 vpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~g 135 (297)
T KOG2024|consen 70 VPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEHEG 135 (297)
T ss_pred cccchhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeeccccc
Confidence 34456666654 47889999999998875431 22346788999999999999999987655544
No 82
>PRK09505 malS alpha-amylase; Reviewed
Probab=68.17 E-value=11 Score=45.95 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=41.7
Q ss_pred hHHHHHHHHHcCCCEEEE-ceeCCCCCC-----------------CCC-----eeeeccchhHHHHHHHHHHcCcEEEEe
Q 004605 59 WPGLVQQAKEGGVNTIES-YVFWNGHEL-----------------SPG-----KYYFGGRFNLVKFIKIIQQARMYMILR 115 (743)
Q Consensus 59 W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp-----------------~~G-----~~dF~g~~dl~~fl~la~~~GL~VIlr 115 (743)
+.+.|.-+|++|+|+|-+ .++=+.|.. -+- .-.|....||+.+++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 457788899999999985 354333321 111 113445679999999999999999987
Q ss_pred cC
Q 004605 116 IG 117 (743)
Q Consensus 116 pG 117 (743)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 63
No 83
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=68.07 E-value=6.2 Score=33.09 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=28.8
Q ss_pred eEEecccceEEEEEECCEEEEEEeCCCCCCCceEeeccccCCCccEEEEEEeccCccc
Q 004605 500 VLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNEIALLSMTVGLQN 557 (743)
Q Consensus 500 ~L~i~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~N 557 (743)
.|.|.+.-..|.|||||+++|... ..+. .+..|.++| -++.-|...
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v--~v~~~Gy~~ 48 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTV--TVEKPGYEP 48 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEE--EEEECCCee
Confidence 466776667889999999999533 1222 255675555 445555544
No 84
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.06 E-value=29 Score=39.77 Aligned_cols=119 Identities=19% Similarity=0.226 Sum_probs=71.6
Q ss_pred CCCChHHHHHHHHHcCCCEEEEce-------------eCCCCCCCCCeeee-ccchhHHHHHHHHHHcCcEEEEecCccc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYV-------------FWNGHELSPGKYYF-GGRFNLVKFIKIIQQARMYMILRIGPFV 120 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv-------------~Wn~hEp~~G~~dF-~g~~dl~~fl~la~~~GL~VIlrpGPyi 120 (743)
.+..-.+.|.+++++|+|||-.-| +|..-. ||++-= .|..=|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 566778999999999999997433 344433 443311 2344788889999999999999988887
Q ss_pred ccccCCC---CCCeeecc-cCcee-ccCC--------C---hhHHHHHHHHHHHHHhccccccCCCcEEEeccccccc
Q 004605 121 AAEYNYG---GIPVWLHY-IPGTV-FRND--------T---EPFKKFMTLIVDMMKREKLFASQGGPIILAQVENEYG 182 (743)
Q Consensus 121 ~aEw~~G---G~P~WL~~-~p~~~-~Rt~--------d---~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg 182 (743)
.|--..- --|.|+.. .|+.. .|.. | |.=.+|+..++..+.+ .+ .|-++|++-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~-~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR-NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh-CC------CCCceecceeec
Confidence 6531111 12555543 23322 2222 1 2334466665555443 22 466778765544
No 85
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=65.89 E-value=2.2 Score=44.53 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 60 PGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
-...+.+.++|.+.|.+.++|..-.+..-.+.. +++.++.+.|++.||.||+.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~---~~i~~v~~~~~~~gl~vIlE~ 132 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVI---EEIAAVVEECHKYGLKVILEP 132 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHH---HHHHHHHHHHHTSEEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHH---HHHHHHHHHHhcCCcEEEEEE
Confidence 567889999999999999999765554433333 389999999999999999993
No 86
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=65.72 E-value=9.7 Score=40.44 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=39.9
Q ss_pred CCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 004605 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 56 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 777899999999999999998 45555544 34677999999999999999998
No 87
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=65.51 E-value=11 Score=40.86 Aligned_cols=67 Identities=9% Similarity=-0.014 Sum_probs=48.7
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCCC-CCeeeeccc--hhHHHHHHHHHHcCcEEEEecCcccc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVA 121 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi~ 121 (743)
..+..++.++++|+.|+.+=.+++=..++... -+.|.|+-. -|..++++.++++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 56678899999999997765444443333322 135655532 38999999999999999999888875
No 88
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=65.30 E-value=5.8 Score=39.66 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=28.6
Q ss_pred CCceEEEEEcCccccccccCCCCCCCCCCCCCCCcccCCCCCCCcccCCCCCCceeeeecCcccccCCccEEEEEEecCC
Q 004605 647 KMGKGLAWLNGEEIGRYWPRKSRKSSPHDECVQECDYRGKFNPDKCITGCGEPSQRWYHIPRSWFKPSENILVIFEEKGG 726 (743)
Q Consensus 647 g~gKG~vwVNG~~iGRYW~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~c~gPqqtlYhvP~~~Lk~g~N~ivvfE~~g~ 726 (743)
.-++=+|.||| ..+..+....+ .+.|.+|+.- -++-.+.--+-||+..|++|.|+|.|--..|.
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~--------~d~~~~r~g~-------~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~gs 154 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFG--------NDNAIYRSGI-------HRGNYRLYEFDIPASLLKAGENTITLTVPSGS 154 (167)
T ss_dssp TT-EEEEEETT-EE-------------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S-
T ss_pred CCCCEEEEEcC-ccCCccccccC--------CCCceeeCce-------ecccEEEEEEEEcHHHEEeccEEEEEEEccCC
Confidence 34677899999 67776631111 1234444331 11123344456999999999999987544444
No 89
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=64.68 E-value=9.8 Score=49.24 Aligned_cols=56 Identities=27% Similarity=0.316 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCEEEE-ceeCCCCCCC---CCe-----e----------eec--cchhHHHHHHHHHHcCcEEEEec
Q 004605 61 GLVQQAKEGGVNTIES-YVFWNGHELS---PGK-----Y----------YFG--GRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 61 ~~l~k~Ka~G~N~V~~-yv~Wn~hEp~---~G~-----~----------dF~--g~~dl~~fl~la~~~GL~VIlrp 116 (743)
..|.-+|++|+|+|.. .|+=+..|.. .|. | .|. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999996 3542222111 110 1 223 56799999999999999999874
No 90
>PLN02361 alpha-amylase
Probab=64.46 E-value=15 Score=41.93 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCEEEEceeCC---CCCCCCCe-e----eeccchhHHHHHHHHHHcCcEEEEec
Q 004605 60 PGLVQQAKEGGVNTIESYVFWN---GHELSPGK-Y----YFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~yv~Wn---~hEp~~G~-~----dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.+.|.-+|++|+++|-+.=+.. .|--.+.. | .|....+|.++++.|++.||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 3567778999999998753321 22222221 2 23446799999999999999999765
No 91
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=63.70 E-value=14 Score=45.77 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHcCCCEEEEc-eeCC----CCCCCC---C--eeeeccchhHHHHHHHHHHcCcEEEEecCc
Q 004605 57 GMWPGLVQQAKEGGVNTIESY-VFWN----GHELSP---G--KYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~y-v~Wn----~hEp~~---G--~~dF~g~~dl~~fl~la~~~GL~VIlrpGP 118 (743)
+.+.+.|.-++++|+++|-+- ++=+ .|--.. . .-+|.+..++.+|++.|+++||.||+-.=|
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 458899999999999999753 3211 111100 0 113457789999999999999999987644
No 92
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=63.69 E-value=11 Score=41.54 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=44.6
Q ss_pred CCCChHHHHHHHHHcCCCEEEEc-------eeCCCCCCCCCeeeec-c-chhHHHHHHHHHHcCcEEEEec
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESY-------VFWNGHELSPGKYYFG-G-RFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~y-------v~Wn~hEp~~G~~dF~-g-~~dl~~fl~la~~~GL~VIlrp 116 (743)
.++.-++.|+.+|+.|+|+|-+= |.+....|..-+..-. . ..|+.++++.++++|+++|.|.
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 34567889999999999998742 3454433333222211 1 3699999999999999999998
No 93
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=61.44 E-value=17 Score=41.25 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=43.4
Q ss_pred CCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 54 SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 54 ~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
...+.|+++++.+|++||+.... |+.-+. .+.. .-|...++.|++.|+++++-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaL----Nig~~d--~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFAL----NIGSSD--SWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE----ecccCC--cccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37788999999999999999998 555222 2222 378889999999999999998
No 94
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=61.37 E-value=18 Score=35.72 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=33.1
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
|+.++++|+..|+............ ...++++.++++++||.+..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEE
Confidence 6789999999999865432222111 34789999999999999763
No 95
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=61.05 E-value=16 Score=38.65 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=44.0
Q ss_pred CCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCc
Q 004605 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (743)
Q Consensus 56 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGP 118 (743)
....++-++..|+.||++|++ ..|..+++ ..+..++|+.+++.||+|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 367778888999999999998 46666665 347789999999999999988874
No 96
>PRK14705 glycogen branching enzyme; Provisional
Probab=60.52 E-value=15 Score=47.27 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=37.9
Q ss_pred HHHHHHcCCCEEEE-cee-------CCCC-----CCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 63 VQQAKEGGVNTIES-YVF-------WNGH-----ELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 63 l~k~Ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
|.-+|++|+|+|+. .|+ |.+. .|.+ .|.+..||..|++.|+++||.|||-.
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~---ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTS---RFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 68899999999996 342 4321 1111 35566899999999999999999764
No 97
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=59.84 E-value=18 Score=45.07 Aligned_cols=59 Identities=24% Similarity=0.270 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHcCCCEEEEc-eeCCCCCCCCC------ee-------eeccchhHHHHHHHHHHcCcEEEEecCc
Q 004605 56 PGMWPGLVQQAKEGGVNTIESY-VFWNGHELSPG------KY-------YFGGRFNLVKFIKIIQQARMYMILRIGP 118 (743)
Q Consensus 56 ~~~W~~~l~k~Ka~G~N~V~~y-v~Wn~hEp~~G------~~-------dF~g~~dl~~fl~la~~~GL~VIlrpGP 118 (743)
-+.+.+.|.-++++|+|+|-.- ++ +..+| .. .|.+..++.+|++.|+++||.|||-.=|
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3458899999999999999763 32 11122 11 2346789999999999999999987755
No 98
>PRK03705 glycogen debranching enzyme; Provisional
Probab=59.10 E-value=15 Score=44.45 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCEEEE-ceeCCCCCCCC---C-----ee----------eecc-----chhHHHHHHHHHHcCcEEEEec
Q 004605 62 LVQQAKEGGVNTIES-YVFWNGHELSP---G-----KY----------YFGG-----RFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 62 ~l~k~Ka~G~N~V~~-yv~Wn~hEp~~---G-----~~----------dF~g-----~~dl~~fl~la~~~GL~VIlrp 116 (743)
.|.-+|++|+|+|.. .|+=...++.. | -| .|.. ..++.++++.|++.||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999996 34311111110 0 01 1222 2589999999999999999875
No 99
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=58.02 E-value=20 Score=41.67 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=42.6
Q ss_pred EEeeCCCCCCCChHHHHHHHH-HcCCCEEEEc-ee---CCCC-C-CCCC--eeeeccchhHHHHHHHHHHcCcEEEEecC
Q 004605 47 AAIHYPRSVPGMWPGLVQQAK-EGGVNTIESY-VF---WNGH-E-LSPG--KYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 47 G~~Hy~R~~~~~W~~~l~k~K-a~G~N~V~~y-v~---Wn~h-E-p~~G--~~dF~g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
|.-|....-.+.|+..|+.++ +.|+..|++- +| .... + ..+| .|||+ .||.++|...++||+-.+..|
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE-
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEEE
Confidence 444444556778999999997 6899999873 21 1111 1 1223 39999 999999999999999887776
No 100
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=54.67 E-value=30 Score=38.55 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=57.9
Q ss_pred CcEEECCEEeEEEEEEeeCCCC-CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeecc--chhHHHHHHHHHHcC
Q 004605 33 RSLIINGRRELIISAAIHYPRS-VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGG--RFNLVKFIKIIQQAR 109 (743)
Q Consensus 33 ~~f~~dGkp~~l~sG~~Hy~R~-~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g--~~dl~~fl~la~~~G 109 (743)
+.+.+.|.++.++.| +--+ +++.-.+.-+.+|++|.+.++.|+|=+.. --|.|.| ..-|.-+.+.|++.|
T Consensus 85 ~~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRT----sp~sf~G~g~~gL~~L~~~~~~~G 157 (335)
T PRK08673 85 GDVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFKPRT----SPYSFQGLGEEGLKLLAEAREETG 157 (335)
T ss_pred CCEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEecCCC----CCcccccccHHHHHHHHHHHHHcC
Confidence 346777788888888 2223 56667777888899999999999985333 3367765 567777778899999
Q ss_pred cEEEEec
Q 004605 110 MYMILRI 116 (743)
Q Consensus 110 L~VIlrp 116 (743)
|.++-.+
T Consensus 158 l~v~tev 164 (335)
T PRK08673 158 LPIVTEV 164 (335)
T ss_pred CcEEEee
Confidence 9998877
No 101
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=54.39 E-value=22 Score=30.06 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=22.7
Q ss_pred ccceEEEEEECCEEEEEEeCCCCCCCceE
Q 004605 505 SKGHALHAFANQELQGSASGNGTHPPFKY 533 (743)
Q Consensus 505 ~~~d~~~vfvng~~~G~~~~~~~~~~~~~ 533 (743)
...|.|.||++++++|++++........+
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy 53 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSY 53 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEE
Confidence 46899999999999999998655543333
No 102
>PRK01060 endonuclease IV; Provisional
Probab=54.31 E-value=60 Score=34.30 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=35.3
Q ss_pred hHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEE
Q 004605 59 WPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYM 112 (743)
Q Consensus 59 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V 112 (743)
+++.|+.++++|++.|+..+. +-+.-..+.++ ..++.++-+++++.||.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~---~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLE---ELNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCC---HHHHHHHHHHHHHcCCCC
Confidence 899999999999999999542 11111121221 236888899999999973
No 103
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=52.90 E-value=63 Score=36.81 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=69.6
Q ss_pred eeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCC----Ceeeeccc---hhHHHHHHHHHHcCcEEEEecCcccc
Q 004605 49 IHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSP----GKYYFGGR---FNLVKFIKIIQQARMYMILRIGPFVA 121 (743)
Q Consensus 49 ~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~----G~~dF~g~---~dl~~fl~la~~~GL~VIlrpGPyi~ 121 (743)
-+|+.+..+.-.+.+++++++|++.+.+=--|.-..... |.+.-+-. .-|..+.+.++++||+.=|+..|-+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 456777888888899999999999776655576442221 33322111 24899999999999999999888765
Q ss_pred cc--cCCCCCCeeecccCce---e------ccCCChhHHHHHHH-HHHHHHhc
Q 004605 122 AE--YNYGGIPVWLHYIPGT---V------FRNDTEPFKKFMTL-IVDMMKRE 162 (743)
Q Consensus 122 aE--w~~GG~P~WL~~~p~~---~------~Rt~d~~y~~~~~~-i~~~l~~~ 162 (743)
+. --+-..|.|+...++- . +-..+|...+|+.. +.+++++.
T Consensus 130 ~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~ 182 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREW 182 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 42 1133579999765431 1 22346777776555 44556543
No 104
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.68 E-value=39 Score=27.87 Aligned_cols=46 Identities=28% Similarity=0.252 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEe
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILR 115 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlr 115 (743)
...++.++.+|+.|+++|.+ .-|.. +. ...++.+++++.||.||..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~i----TDh~~------~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAI----TDHGN------LF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEE----eeCCc------cc---CHHHHHHHHHHcCCeEEEE
Confidence 34788999999999999998 55542 22 4568889999999988743
No 105
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=52.10 E-value=7.2 Score=46.41 Aligned_cols=28 Identities=39% Similarity=0.572 Sum_probs=25.8
Q ss_pred ccccCCCCCCcCCCCCCCCchhHHHHHH
Q 004605 305 ITTSYDYEAPIDEYGLPRNPKWGHLKEL 332 (743)
Q Consensus 305 ~~TSYDY~Api~E~G~~~tpky~~lr~l 332 (743)
..|||||+||+.|+|+++++||.++|+.
T Consensus 325 ~hts~d~~ep~lv~gd~~~~kyg~~~~~ 352 (649)
T KOG0496|consen 325 LHTSYDYCEPALVAGDITTAKYGNLREA 352 (649)
T ss_pred chhhhhhcCccccccCcccccccchhhH
Confidence 6899999999999999889999999954
No 106
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.97 E-value=30 Score=37.63 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=51.1
Q ss_pred CCCCCCChHHHHHHHHHcCCC--EEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCccccc
Q 004605 52 PRSVPGMWPGLVQQAKEGGVN--TIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAA 122 (743)
Q Consensus 52 ~R~~~~~W~~~l~k~Ka~G~N--~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi~a 122 (743)
...+.+.-++.++++++.|+. +|-+=..|- ..-|.|.|+-. -|..++++..++.|+++++..=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 446777889999999999965 554434452 34566666532 389999999999999999999888854
No 107
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.66 E-value=21 Score=37.72 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VI 113 (743)
-.|++.++.++++|++.|+..+. ..|+ .....+|+ ..++..+.++++++||.|.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIP 69 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCce
Confidence 46999999999999999999532 1121 01122333 3478899999999999875
No 108
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=50.98 E-value=26 Score=37.37 Aligned_cols=48 Identities=27% Similarity=0.286 Sum_probs=35.8
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
.+++|++|++.|-+ +|-|.+. .|. .+..+.+=++.|.++||.+|++.|
T Consensus 79 ~~mLkd~G~~~vii----GHSERR~---~f~Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII----GHSERRQ---YFGETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe----CcccccC---ccCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999999999 8877765 233 233444444559999999999998
No 109
>PLN00196 alpha-amylase; Provisional
Probab=50.71 E-value=35 Score=39.25 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEEc-eeCC--CCCCCCCe-ee-----eccchhHHHHHHHHHHcCcEEEEec
Q 004605 60 PGLVQQAKEGGVNTIESY-VFWN--GHELSPGK-YY-----FGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~y-v~Wn--~hEp~~G~-~d-----F~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.+.|.-+|++|+++|-+- ++-+ .|--.+.. |+ |....+|.++++.|++.||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888899999999875 3322 12222221 22 3345799999999999999999875
No 110
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=50.59 E-value=28 Score=36.26 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 004605 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 58 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
-+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984322 13678899999999999864
No 111
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=50.55 E-value=31 Score=35.77 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=37.9
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
..++|++|++.|-+ +|-|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 45899999999999 888887 5444 68899999999999999998
No 112
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=50.50 E-value=30 Score=46.07 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=45.0
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCe---e----------eeccchhHHHHHHHHHHcCcEEEEecCc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGK---Y----------YFGGRFNLVKFIKIIQQARMYMILRIGP 118 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~---~----------dF~g~~dl~~fl~la~~~GL~VIlrpGP 118 (743)
+-+.|.+.|.-+|++|+|+|-+-=++ +..+|. | .|.+..|+.+|++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44569999999999999999763112 222221 1 3456789999999999999999987644
No 113
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=50.10 E-value=24 Score=43.04 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=36.5
Q ss_pred HHHHHHHcCCCEEEE-ceeCCCCC-------------CCCCee-----ee---ccchhHHHHHHHHHHcCcEEEEec
Q 004605 62 LVQQAKEGGVNTIES-YVFWNGHE-------------LSPGKY-----YF---GGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 62 ~l~k~Ka~G~N~V~~-yv~Wn~hE-------------p~~G~~-----dF---~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.|.-+|++|+|+|.. .|+=...+ -.+..| .| ....+|.++++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999996 35411111 111111 12 124689999999999999999876
No 114
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=50.10 E-value=14 Score=36.97 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.2
Q ss_pred EEecCCCceEEEEEcCccccccc
Q 004605 642 GLDMLKMGKGLAWLNGEEIGRYW 664 (743)
Q Consensus 642 ~Ld~~g~gKG~vwVNG~~iGRYW 664 (743)
.|..++.|+=.+||||+.+|+--
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-
T ss_pred EEEEEeCeeEEEEECCEEeeCCc
Confidence 46667778889999999999843
No 115
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=49.70 E-value=59 Score=32.39 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=30.5
Q ss_pred CeEEecccceEEEEEECCEEEEEEe---C-CCCCCCc---eEeeccccCCCccEEEEEEeccCc
Q 004605 499 PVLLIESKGHALHAFANQELQGSAS---G-NGTHPPF---KYKNPISLKAGKNEIALLSMTVGL 555 (743)
Q Consensus 499 ~~L~i~~~~d~~~vfvng~~~G~~~---~-~~~~~~~---~~~~~~~l~~g~~~L~ILven~Gr 555 (743)
..|.|.. ..+-.+||||+.||... + ..-.... ++.+.--|+.|+|+|.|++-+...
T Consensus 6 A~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 4566654 34779999999999754 1 1101111 233222378899999999976544
No 116
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=49.52 E-value=53 Score=35.56 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=62.6
Q ss_pred EEEEEEeeCCCCCCC-ChHH---HHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCc
Q 004605 43 LIISAAIHYPRSVPG-MWPG---LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (743)
Q Consensus 43 ~l~sG~~Hy~R~~~~-~W~~---~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGP 118 (743)
+-+++..|+..-+.. ..+. +|++--++|.+.+-|-. .||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~----------~Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQL----------FYDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccc----------eecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 468888888764332 2332 34433369999999933 34544 7889999999987664444444
Q ss_pred ccc---------cccCCCCCCeeecccCceeccCCChhHHH----HHHHHHHHHH
Q 004605 119 FVA---------AEYNYGGIPVWLHYIPGTVFRNDTEPFKK----FMTLIVDMMK 160 (743)
Q Consensus 119 yi~---------aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~----~~~~i~~~l~ 160 (743)
..+ +||..--+|.|+.+.=. ....+++...+ +..++++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 322 57887778999985200 01222233232 6666666665
No 117
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=49.30 E-value=1e+02 Score=34.95 Aligned_cols=135 Identities=14% Similarity=0.188 Sum_probs=63.4
Q ss_pred HHcCCCEEEEcee---------------CCCC---CCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCC
Q 004605 67 KEGGVNTIESYVF---------------WNGH---ELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGG 128 (743)
Q Consensus 67 Ka~G~N~V~~yv~---------------Wn~h---Ep~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG 128 (743)
|.+|||.+|.-|- |-.. .+..|.|||+.+..=+.||+.|++.|+..++-.- =-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cC
Confidence 4578887775442 2211 2457999999777777899999999999877551 23
Q ss_pred CCeeecccCc--------eeccCCC-hhHHHHHHHHHHHHHhccccccCCCcEEEecccccccccc-------cccC-cc
Q 004605 129 IPVWLHYIPG--------TVFRNDT-EPFKKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYE-------SFYG-EG 191 (743)
Q Consensus 129 ~P~WL~~~p~--------~~~Rt~d-~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~-------~~~~-~~ 191 (743)
.|.|+++.-. ..||... ..|-.|+..+++.++. .|=+|=-+--=||--... +.+. +.
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~------~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e 201 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKK------WGINFDYISPFNEPQWNWAGGSQEGCHFTNEE 201 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHC------TT--EEEEE--S-TTS-GG--SS-B----HHH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHh------cCCccceeCCcCCCCCCCCCCCcCCCCCCHHH
Confidence 6777775321 1133222 2344456565555532 222444444457753211 0011 23
Q ss_pred cHHHHHHHHHHHHhcCCccceEEec
Q 004605 192 GKRYALWAAKMAVAQNIGVPWIMCQ 216 (743)
Q Consensus 192 ~~~y~~~L~~~~~~~g~~vP~~~~~ 216 (743)
..+.++.|....++.|+..-+..++
T Consensus 202 ~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 202 QADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEecc
Confidence 4678888988898889987655544
No 118
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=48.57 E-value=46 Score=37.12 Aligned_cols=115 Identities=15% Similarity=0.234 Sum_probs=66.0
Q ss_pred EEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHHHH
Q 004605 73 TIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKKFM 152 (743)
Q Consensus 73 ~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~ 152 (743)
.|.+.|.|+++--+. -=...++.|+++|++|+--. .=||+ +-+.|+.. + +..+...-..+.
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~~~~~~~~~~a 92 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LKKDEDGSFPVA 92 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hccCcccchHHH
Confidence 367778888754221 00167999999999997422 33665 33456543 1 332122333488
Q ss_pred HHHHHHHHhccccccCCCcEEEecccccccccccccCcccHHHHHHHHHHHHhc--CCccceEE
Q 004605 153 TLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQ--NIGVPWIM 214 (743)
Q Consensus 153 ~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~--g~~vP~~~ 214 (743)
++|+++++.+++ .| +.+=+|+..+... ....-.+|++.|++.+++. +..|-|+.
T Consensus 93 ~kLv~lak~yGf----DG--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 93 DKLVEVAKYYGF----DG--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred HHHHHHHHHhCC----Cc--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 899988875443 34 6777788873110 0112345777777777764 33444553
No 119
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=47.49 E-value=35 Score=37.31 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=40.7
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee---CCCCCCCCC--------eeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVF---WNGHELSPG--------KYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~---Wn~hEp~~G--------~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.+..-..+++.+|..|+|++-+=+- =++.=|... +=.| .|+..||+-|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 4566788999999999999865221 011111111 1123 399999999999999999997
No 120
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=47.44 E-value=22 Score=37.52 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCC--CeeeeccchhHHHHHHHHHHcCcE
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSP--GKYYFGGRFNLVKFIKIIQQARMY 111 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~--G~~dF~g~~dl~~fl~la~~~GL~ 111 (743)
..--|+++|.-+|++||+-|+. +.-|..+ -+.||+. .....+.+++++.|+.
T Consensus 16 ~~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv~ 69 (287)
T COG3623 16 NGFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGVR 69 (287)
T ss_pred CCCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCCC
Confidence 3456999999999999999999 8888766 3677773 3445678888999983
No 121
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=46.89 E-value=31 Score=44.21 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHcCcEEEEec
Q 004605 96 FNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 96 ~dl~~fl~la~~~GL~VIlrp 116 (743)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999875
No 122
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=46.65 E-value=19 Score=39.50 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcE--EE-Eec
Q 004605 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMY--MI-LRI 116 (743)
Q Consensus 58 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~--VI-lrp 116 (743)
.|++.+.+++..|+ +|+..-+--..|..|+.|. |+.+.+++|+..||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6788888899999999986 999999999999986 44 776
No 123
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=46.04 E-value=42 Score=35.61 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
.+++|++|++.|-+ +|-|.+.- |. +.+.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR~~-f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII----GHSERRQY-FG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe----CcccccCc-CC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 45899999999999 88887642 11 2456888889999999999999998
No 124
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=45.98 E-value=28 Score=39.27 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=70.1
Q ss_pred HHHHhhhcccccceeEEEeCCcEEECCEEeEEEEEEeeCCC-CCCCChHHHHHHHHHc-CCCEEEEceeCCCCCCCCCee
Q 004605 13 LIFFSSSITYCFAGNVTYDSRSLIINGRRELIISAAIHYPR-SVPGMWPGLVQQAKEG-GVNTIESYVFWNGHELSPGKY 90 (743)
Q Consensus 13 ~~~~~~~~~~~~~~~v~~d~~~f~~dGkp~~l~sG~~Hy~R-~~~~~W~~~l~k~Ka~-G~N~V~~yv~Wn~hEp~~G~~ 90 (743)
=+.+++.+++. ..|-.-+-+|-+.-.+-....=|+.|+- .|.+.|+-+|.-+.++ -=||+.+-|- |=+.|--++|
T Consensus 140 e~~i~~LA~p~--aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVy 216 (447)
T KOG0259|consen 140 ELAISSLANPG--ANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVY 216 (447)
T ss_pred HHHHHHhcCCC--CceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccc
Confidence 35566666554 3455555555555444444445665554 5889999999999984 7899988554 7888888999
Q ss_pred eeccchhHHHHHHHHHHcCcEEEE
Q 004605 91 YFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 91 dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
.-. .|.+++++|+++|+.||.
T Consensus 217 s~~---HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 217 SED---HLKKIAETAKKLGIMVIA 237 (447)
T ss_pred cHH---HHHHHHHHHHHhCCeEEe
Confidence 877 999999999999999984
No 125
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=45.79 E-value=33 Score=37.60 Aligned_cols=66 Identities=9% Similarity=0.150 Sum_probs=48.9
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCC--eeeeccch--hHHHHHHHHHHcCcEEEEecCcccc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPG--KYYFGGRF--NLVKFIKIIQQARMYMILRIGPFVA 121 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G--~~dF~g~~--dl~~fl~la~~~GL~VIlrpGPyi~ 121 (743)
..+.-++.++++++.||-+=.+.+=|.+.. ..+ .|.|+-.+ |..++++.+++.|++|++..=|+|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 455567889999999887655554454433 234 77776443 8999999999999999998877773
No 126
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=45.41 E-value=28 Score=30.72 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=26.9
Q ss_pred ccCCCcEEEeccccc-cccccccc----C-cccHHHHHHHHHH---HHhcCCccceEE
Q 004605 166 ASQGGPIILAQVENE-YGYYESFY----G-EGGKRYALWAAKM---AVAQNIGVPWIM 214 (743)
Q Consensus 166 ~~~gGpII~~QIENE-yg~~~~~~----~-~~~~~y~~~L~~~---~~~~g~~vP~~~ 214 (743)
+++.+.|.+|+|-|| -++....+ + .....|.+||+++ +|+.+.+.|+..
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 466789999999999 44221111 1 1234566666655 566778888654
No 127
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=44.65 E-value=34 Score=44.58 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=51.6
Q ss_pred cEEECCEEeEEEEE---EeeCCCC--CCCChHHHHHHHHHcCCCEEEE-cee-CC---CCCCCCCeee----e----ccc
Q 004605 34 SLIINGRRELIISA---AIHYPRS--VPGMWPGLVQQAKEGGVNTIES-YVF-WN---GHELSPGKYY----F----GGR 95 (743)
Q Consensus 34 ~f~~dGkp~~l~sG---~~Hy~R~--~~~~W~~~l~k~Ka~G~N~V~~-yv~-Wn---~hEp~~G~~d----F----~g~ 95 (743)
.+.|||++.+.+.+ .-..+++ +-+.|+++|..+|++|.|+|-. .++ =. ..=...+++. | .+.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 45666633332222 2234454 3367999999999999999985 333 11 1111122222 3 256
Q ss_pred hhHHHHHHHHHHc-CcEEEEec
Q 004605 96 FNLVKFIKIIQQA-RMYMILRI 116 (743)
Q Consensus 96 ~dl~~fl~la~~~-GL~VIlrp 116 (743)
.|+.++++.|++. ||++|+-.
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe
Confidence 7899999999885 99999764
No 128
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=44.31 E-value=35 Score=36.28 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=49.5
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCee--eecc--chhHHHHHHHHHHcCcEEEEecCccc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKY--YFGG--RFNLVKFIKIIQQARMYMILRIGPFV 120 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~--dF~g--~~dl~~fl~la~~~GL~VIlrpGPyi 120 (743)
..+..++.++.+++.|+-.=.+.+=+.+.+. -+.| +|+- --|..++++..+++|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5566788999999999986666655554443 3556 4442 24899999999999999999998887
No 129
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.84 E-value=40 Score=36.92 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=49.1
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCC-----CCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCcccc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHEL-----SPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVA 121 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-----~~G~~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi~ 121 (743)
..+..++.++++|+.||-+=.+.+=+.++.. .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566788999999999876665554333332 2346666533 38999999999999999999888774
No 130
>PRK12677 xylose isomerase; Provisional
Probab=43.55 E-value=1.4e+02 Score=33.90 Aligned_cols=55 Identities=11% Similarity=-0.007 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeec---cchhHHHHHHHHHHcCcEEE-Eec
Q 004605 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG---GRFNLVKFIKIIQQARMYMI-LRI 116 (743)
Q Consensus 56 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~---g~~dl~~fl~la~~~GL~VI-lrp 116 (743)
+-.+++.+++++++|+..|+.. .+..--|+.+ -.+.+.++.+++++.||.|. +-+
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~ 88 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTT 88 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEec
Confidence 3358999999999999999883 1111112111 12358899999999999976 544
No 131
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=41.56 E-value=40 Score=37.36 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=54.0
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccc--hhH--HHHHHHHHHcCcEEEEecCcccc
Q 004605 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNL--VKFIKIIQQARMYMILRIGPFVA 121 (743)
Q Consensus 49 ~Hy~R~---~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl--~~fl~la~~~GL~VIlrpGPyi~ 121 (743)
+|..|. +.+..++.++++++.||.+=.+.+=+.++.. -+.|.|+.. -|. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455553 4566788999999999886665554444432 466776653 377 99999999999999999989887
Q ss_pred c
Q 004605 122 A 122 (743)
Q Consensus 122 a 122 (743)
-
T Consensus 92 ~ 92 (339)
T cd06602 92 A 92 (339)
T ss_pred c
Confidence 4
No 132
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=41.13 E-value=55 Score=35.01 Aligned_cols=48 Identities=25% Similarity=0.294 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
..++|++|++.|-+ +|.|.+. .|. -+..+.+=++.|.++||.+||+.|
T Consensus 81 ~~mL~d~G~~~vii----GHSERR~---~~~E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI----GHSERRL---YFGETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE----Ccccccc---ccccchHHHHHHHHHHHHCCCeEEEEcC
Confidence 45899999999998 8887665 443 234566778899999999999998
No 133
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.93 E-value=53 Score=35.98 Aligned_cols=65 Identities=6% Similarity=0.042 Sum_probs=46.6
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCC---CCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCcccc
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHEL---SPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVA 121 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp---~~G~~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi~ 121 (743)
+.-++.++++++.||-+=.+.+-+.+..- ....|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 45678899999999976666554333221 1234555432 38999999999999999999988874
No 134
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=40.71 E-value=1.1e+02 Score=33.12 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=67.1
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeec---cchhHHHHHHHHHHcCcEEEEecCcccccccCCCCC--
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG---GRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGI-- 129 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~---g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~-- 129 (743)
.-+..++-+.-+.++|+.-|-+=.-|...+ ....+||+ ...||.++++-|++.|+.|+|.. -|..||-
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~------~~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY------HSETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE------ECCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE------eCCcchhhH
Confidence 445567788899999999998877787622 23466776 35699999999999999888876 2333221
Q ss_pred ------Ceeecc-----cCceec---cCCChhHHHHHHHHHHHHHhccccccCCCcEE
Q 004605 130 ------PVWLHY-----IPGTVF---RNDTEPFKKFMTLIVDMMKREKLFASQGGPII 173 (743)
Q Consensus 130 ------P~WL~~-----~p~~~~---Rt~d~~y~~~~~~i~~~l~~~~~~~~~gGpII 173 (743)
-.+|.. +.++++ -.++..-.+|+.+|++.-++++|+..=||++.
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 111111 233442 23444555699999999988777665555543
No 135
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=40.39 E-value=43 Score=37.06 Aligned_cols=73 Identities=7% Similarity=-0.039 Sum_probs=52.5
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCccccc
Q 004605 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAA 122 (743)
Q Consensus 49 ~Hy~R~---~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi~a 122 (743)
+|..|. +.+.-++.++++++.||.+=.+.+=+.+. ...+.|.|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~ 90 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKR 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 344443 45556788999999998866655443322 34566777643 289999999999999999999999874
No 136
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=39.76 E-value=43 Score=36.71 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCcccc
Q 004605 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVA 121 (743)
Q Consensus 49 ~Hy~R~---~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi~ 121 (743)
+|..|. ..+..++.++++++.++-.=.+.+=+.+.. .-+.|+|+.. -|..+|++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344554 456678899999999987655554432222 2456766543 38999999999999999999888885
No 137
>PRK14565 triosephosphate isomerase; Provisional
Probab=38.96 E-value=53 Score=34.86 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=36.0
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
.+++|++|++.+-+ +|-|.+. .|. .+..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~~vii----GHSERR~---~f~Etd~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL----GHSERRS---TFHETDSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE----CcccccC---cCCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999999998 8888775 343 122333334889999999999998
No 138
>PLN03059 beta-galactosidase; Provisional
Probab=38.46 E-value=1e+02 Score=38.40 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=31.2
Q ss_pred CCceEEEEEEECCCCC-------CCeEEecCCCc-eEEEEEcCcccccccc
Q 004605 623 QPLTWYKAVVKQPPGD-------EPIGLDMLKMG-KGLAWLNGEEIGRYWP 665 (743)
Q Consensus 623 ~~~~wYk~~F~~~~~~-------d~~~Ld~~g~g-KG~vwVNG~~iGRYW~ 665 (743)
.+..||+++|+++... ++ .|.+.+.+ +.+|||||.-+|.-.-
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~-~L~v~~~~d~~~vFVNg~~~Gt~~~ 518 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYP-VLTIFSAGHALHVFINGQLAGTVYG 518 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCc-eEEEcccCcEEEEEECCEEEEEEEe
Confidence 4689999999987543 23 36665554 5799999999998654
No 139
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=38.23 E-value=18 Score=41.13 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCcchhHHHHHHHhhhcccccc-eeEEEeC--CcEEECCEEeEEEEEEeeCCCC-CCCChHHHHHHHHHcC--CCEEEEc
Q 004605 4 RTPIAPFALLIFFSSSITYCFA-GNVTYDS--RSLIINGRRELIISAAIHYPRS-VPGMWPGLVQQAKEGG--VNTIESY 77 (743)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~d~--~~f~~dGkp~~l~sG~~Hy~R~-~~~~W~~~l~k~Ka~G--~N~V~~y 77 (743)
++.+..=+++.|.+.+..-+.. ..|-.|. +.=++||-+ +-.++.+.|+- ..+.-++.|++-+..| -..|-|
T Consensus 101 ~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt- 177 (388)
T COG0156 101 AALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT- 177 (388)
T ss_pred cEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE-
Confidence 3444444555555544444432 3333342 223677777 66677787775 4577777887766554 566777
Q ss_pred eeCCCCCCCCCeeeeccc-hhHHHHHHHHHHcCcEEEEe
Q 004605 78 VFWNGHELSPGKYYFGGR-FNLVKFIKIIQQARMYMILR 115 (743)
Q Consensus 78 v~Wn~hEp~~G~~dF~g~-~dl~~fl~la~~~GL~VIlr 115 (743)
+|+|..+|+ .+|.++.++|+++|.++++-
T Consensus 178 ---------egVfSMdGdiApL~~l~~L~~ky~a~L~VD 207 (388)
T COG0156 178 ---------EGVFSMDGDIAPLPELVELAEKYGALLYVD 207 (388)
T ss_pred ---------eccccCCCCcCCHHHHHHHHHHhCcEEEEE
Confidence 999999997 89999999999999887754
No 140
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=38.09 E-value=63 Score=32.62 Aligned_cols=89 Identities=13% Similarity=0.242 Sum_probs=55.2
Q ss_pred EEEEeeCCCCC-----CCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeee--cc-chhHHHHHHHHHHcCcEEEEec
Q 004605 45 ISAAIHYPRSV-----PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYF--GG-RFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 45 ~sG~~Hy~R~~-----~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF--~g-~~dl~~fl~la~~~GL~VIlrp 116 (743)
.-|.+||++.. .++.+.-++.++..++.. ...|--.|..++.+.- +- ...+.+|++..+++|.++++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 34899998753 455777788888765432 1113333433333221 11 1467899999999999999999
Q ss_pred Ccccc----ccc---CCCCCCeeeccc
Q 004605 117 GPFVA----AEY---NYGGIPVWLHYI 136 (743)
Q Consensus 117 GPyi~----aEw---~~GG~P~WL~~~ 136 (743)
.++-. +.. +...+|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 88521 111 145789999864
No 141
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=38.07 E-value=43 Score=38.25 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCEEEE-cee---CCCCCCCCCee-----eeccchhHHHHHHHHHHcCcEEEEec
Q 004605 61 GLVQQAKEGGVNTIES-YVF---WNGHELSPGKY-----YFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 61 ~~l~k~Ka~G~N~V~~-yv~---Wn~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
+.|.-+|.+|+++|-+ .++ -..|.-..-.| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999964 222 12222111000 56778899999999999999999654
No 142
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=37.85 E-value=1.3e+02 Score=33.53 Aligned_cols=72 Identities=10% Similarity=0.037 Sum_probs=54.9
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCcccc
Q 004605 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVA 121 (743)
Q Consensus 49 ~Hy~R~---~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi~ 121 (743)
+|..|. +.+..++.++++++.+|-.=.+++=|.++. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455553 566788899999999987666665555554 3466777643 38899999999999999999989987
No 143
>PRK09989 hypothetical protein; Provisional
Probab=37.69 E-value=62 Score=33.96 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 004605 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 58 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
-.+++|++++++|++.|++..+|. .+.+++.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999843332 2466788889999999874
No 144
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=37.33 E-value=1.6e+02 Score=27.46 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=42.7
Q ss_pred EEEEEEeeecCCchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeCCCC-----CCCceEeeccccCCC-ccEEEEEE
Q 004605 477 YLWYTTSIIVNENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASGNGT-----HPPFKYKNPISLKAG-KNEIALLS 550 (743)
Q Consensus 477 yl~Y~t~i~~~~~~~~~~~~~~~~L~i~~~~d~~~vfvng~~~G~~~~~~~-----~~~~~~~~~~~l~~g-~~~L~ILv 550 (743)
.+.|++.|..+.+. .-++.+. ..|.+.+||||+.+-...+... .........+.|.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G-------~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETG-------TYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSE-------EEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCc-------eEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 45678888765433 1334444 6788999999999987765432 001122233456555 68888877
Q ss_pred eccCc
Q 004605 551 MTVGL 555 (743)
Q Consensus 551 en~Gr 555 (743)
.+.+.
T Consensus 119 ~~~~~ 123 (145)
T PF07691_consen 119 FNRGG 123 (145)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 66554
No 145
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=36.83 E-value=34 Score=38.20 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=44.2
Q ss_pred CCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 53 RSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 53 R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
|.+...-.-..+.++++|.++|.+.++|.-.++.+ -+-.-..+|.++.+.|++.||-+++.+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 54444433346789999999999999998553310 001123489999999999999999875
No 146
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=36.81 E-value=62 Score=36.32 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=49.7
Q ss_pred HHHcCcEEEEecCcccccccCCCCCCeeecccCce------ecc-CCChhHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 004605 105 IQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGT------VFR-NDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQV 177 (743)
Q Consensus 105 a~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~------~~R-t~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QI 177 (743)
+-..|+.|+.-| |+ .|+|+...-.+ +|| ...++|.+|+...+..++ .+|=|+-+..|
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~m~------~nGvnlyalSV 174 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLEMK------NNGVNLYALSV 174 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHHHHHH------hCCCceeEEee
Confidence 556899999888 65 89999753221 232 223444445555444444 46668888888
Q ss_pred cccccccccccCc---ccHHHHHHHHHHHHhc
Q 004605 178 ENEYGYYESFYGE---GGKRYALWAAKMAVAQ 206 (743)
Q Consensus 178 ENEyg~~~~~~~~---~~~~y~~~L~~~~~~~ 206 (743)
.||-.... .|+. ...+.++.++|-++..
T Consensus 175 QNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si 205 (433)
T COG5520 175 QNEPDYAP-TYDWCWWTPQEELRFMRQYLASI 205 (433)
T ss_pred ccCCcccC-CCCcccccHHHHHHHHHHhhhhh
Confidence 89964211 1121 2455666666666554
No 147
>PLN02784 alpha-amylase
Probab=36.09 E-value=54 Score=40.87 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCEEEEceeCCCCCC---CCCe-ee----eccchhHHHHHHHHHHcCcEEEEec
Q 004605 60 PGLVQQAKEGGVNTIESYVFWNGHEL---SPGK-YY----FGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp---~~G~-~d----F~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.++|..++++|+++|-+.=+.....+ .+.. |+ |....+|..+++.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35677889999999987533211111 1111 11 2335799999999999999999865
No 148
>PRK14566 triosephosphate isomerase; Provisional
Probab=35.78 E-value=76 Score=34.16 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=38.6
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
.+++|++|++.|-+ +|-|.+. .|. -+..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii----GHSERR~---~f~Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII----GHSERRR---MYGETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE----CcccccC---CCCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999999998 8888765 343 345666788899999999999998
No 149
>PLN02429 triosephosphate isomerase
Probab=35.58 E-value=61 Score=35.82 Aligned_cols=48 Identities=21% Similarity=0.094 Sum_probs=34.4
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
.+++|++|++.|-+ +|-|.+. .|. .+..+.+=+..|.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~Vii----GHSERR~---~f~Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL----GHSERRH---VIGEKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe----CccccCC---CCCcCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999999888 8888765 243 122333334449999999999998
No 150
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=35.49 E-value=1.8e+02 Score=35.61 Aligned_cols=109 Identities=9% Similarity=0.026 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHcCCCEEE---------------EceeCCCCCCCCCeee-eccchhHHHHHHHHHHcCcEEEEecCccc
Q 004605 57 GMWPGLVQQAKEGGVNTIE---------------SYVFWNGHELSPGKYY-FGGRFNLVKFIKIIQQARMYMILRIGPFV 120 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~---------------~yv~Wn~hEp~~G~~d-F~g~~dl~~fl~la~~~GL~VIlrpGPyi 120 (743)
+.-...|+.+|++|+|||= .|++| -|= ||+-| |+ -| ...++.+.|+.|..+-.||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~f~---~~--aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADLFN---RV--AWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCCcC---HH--HHHHHHhhCCEEEEecccee
Confidence 4466789999999999985 46677 333 33333 12 11 34568999999999999985
Q ss_pred cc---------ccCCCCCCeeecccCceeccCCChhHHHHHHHHHHHHHhccccccCCCcEEEeccccc
Q 004605 121 AA---------EYNYGGIPVWLHYIPGTVFRNDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQVENE 180 (743)
Q Consensus 121 ~a---------Ew~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENE 180 (743)
.. +++..+-|.-.......++=--+|.=+++++.|.+-|+++ .+|=++|...+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred eccCCCcchhhhccccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 42 2222222222211000011112345556888888888752 24555555444
No 151
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=35.35 E-value=61 Score=35.32 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=62.4
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee----CCCC-CCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCC
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVF----WNGH-ELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYG 127 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~----Wn~h-Ep~--~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~G 127 (743)
+.++-++.++.|...|+|.+..|+- +.-+ |-. +|.|. ..|+.++++.|++.|+.||-.+--.-+.|+- .
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~-l 90 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQTLGHLEFI-L 90 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCCHHHHHHH-H
Confidence 3467889999999999999998752 3221 111 23332 3599999999999999999665433344431 1
Q ss_pred CCCeeec--cc--CceeccCCChhHHHHHHHHHHHHHh
Q 004605 128 GIPVWLH--YI--PGTVFRNDTEPFKKFMTLIVDMMKR 161 (743)
Q Consensus 128 G~P~WL~--~~--p~~~~Rt~d~~y~~~~~~i~~~l~~ 161 (743)
..|.... .. +.-.+...+|.-.++++.|++.+.+
T Consensus 91 ~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~ 128 (301)
T cd06565 91 KHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLE 128 (301)
T ss_pred hCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHH
Confidence 1121111 11 1112334455555688888888774
No 152
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=35.31 E-value=91 Score=37.76 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=53.1
Q ss_pred CCCChHHHHHHHHHcCCCEEEEc-e--e---CC--CCCCCCCeeeec---------cchhHHHHHHHHHHcCcEEEEecC
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESY-V--F---WN--GHELSPGKYYFG---------GRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~y-v--~---Wn--~hEp~~G~~dF~---------g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
.+.+|+ .++.+|+++|-+- + . |. +..-..|-||=+ ...|++++++.|+++||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 445555 6889999999852 2 2 32 223334556532 346999999999999999996543
Q ss_pred --------cccccccCCCCCCeeec
Q 004605 118 --------PFVAAEYNYGGIPVWLH 134 (743)
Q Consensus 118 --------Pyi~aEw~~GG~P~WL~ 134 (743)
||.-||...+-+|.|.+
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 37778888888888873
No 153
>PTZ00333 triosephosphate isomerase; Provisional
Probab=34.86 E-value=81 Score=33.80 Aligned_cols=48 Identities=23% Similarity=0.226 Sum_probs=39.8
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeee-ccchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYF-GGRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF-~g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
.+++|++|++.|-+ +|-|.+. .| +.+..+.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii----GHSERR~---~f~Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL----GHSERRQ---YFGETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE----CcccccC---cCCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 35899999999999 8777765 33 3456888889999999999999998
No 154
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=34.72 E-value=62 Score=33.93 Aligned_cols=42 Identities=10% Similarity=0.223 Sum_probs=34.7
Q ss_pred hHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 004605 59 WPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 59 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
++++|++++++|++.|+.. . +. ..+++++.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 8899999999999999983 1 11 13789999999999999854
No 155
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=34.36 E-value=2e+02 Score=30.14 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=36.8
Q ss_pred hHHHHHHHHHcCCCEEEEceeCCCCCCCCCee-eeccchhHHHHHHHHHHcCcEEEE
Q 004605 59 WPGLVQQAKEGGVNTIESYVFWNGHELSPGKY-YFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 59 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~-dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
-++.|+.+.++|++.|+. ...+|..-.- +++ ..+++++.+++++.||.+.+
T Consensus 12 ~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 12 LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSV 63 (273)
T ss_pred HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 457899999999999999 5555533110 222 23688899999999998654
No 156
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.21 E-value=44 Score=35.16 Aligned_cols=58 Identities=19% Similarity=0.032 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHcCCCEEEEceeCCCCCCCC----CeeeeccchhHHHHHHHHHHcCcEEEEec-Ccc
Q 004605 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSP----GKYYFGGRFNLVKFIKIIQQARMYMILRI-GPF 119 (743)
Q Consensus 58 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~----G~~dF~g~~dl~~fl~la~~~GL~VIlrp-GPy 119 (743)
.+++.++.++++|..+|.+ |..+.... -.++.. ...|.++.++|+++|+.+.+.+ +|+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 4566788999999999966 22222111 111111 1368889999999999999998 443
No 157
>PLN02877 alpha-amylase/limit dextrinase
Probab=34.12 E-value=70 Score=40.50 Aligned_cols=21 Identities=10% Similarity=0.417 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEEec
Q 004605 96 FNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 96 ~dl~~fl~la~~~GL~VIlrp 116 (743)
+++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999875
No 158
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=33.87 E-value=16 Score=32.00 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQA 108 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~ 108 (743)
....|-.-+|.+-. .||.|..|||. +|.+||++|.|.
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 34457777776654 48999999999 999999999873
No 159
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.81 E-value=80 Score=34.19 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=47.7
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCC--------CCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCccc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHEL--------SPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFV 120 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp--------~~G~~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi 120 (743)
+.+.-++.++++|+.||-+=.+++=..+|.- .-+.|.|+-. -|..++++..++.|++|++.+=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5566788999999999886666553333321 2356777643 4999999999999999998886654
No 160
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=33.65 E-value=65 Score=40.55 Aligned_cols=21 Identities=0% Similarity=0.327 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHcCcEEEEec
Q 004605 96 FNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 96 ~dl~~fl~la~~~GL~VIlrp 116 (743)
+++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999865
No 161
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=33.42 E-value=63 Score=34.31 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-EecCccccc
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPFVAA 122 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VI-lrpGPyi~a 122 (743)
+.-.+.++++|++|+ -|+.+| +|.+ +-+++|++.|...| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 345677899999999 667655 6666 67999999999987 999999865
No 162
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=33.21 E-value=67 Score=35.51 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=50.8
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCcccc
Q 004605 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVA 121 (743)
Q Consensus 49 ~Hy~R~---~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi~ 121 (743)
+|..|. +.+..++.++++++.||-.=.+.+=+.+.. .-+.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455553 455668899999999987655444333332 3345666533 37899999999999999998888875
No 163
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.85 E-value=2e+02 Score=30.15 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=54.0
Q ss_pred HHHcCCCEEEEceeCCCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCC
Q 004605 66 AKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRND 144 (743)
Q Consensus 66 ~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~ 144 (743)
+-...|..|-.-. -.. ...|...+. ...++..+++.|++.|++|++..|= |..+. +. . -..
T Consensus 18 ~~~~~lThv~~~f-~~i--~~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~----~---~~~ 79 (253)
T cd06545 18 IDFSKLTHINLAF-ANP--DANGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FT----A---ALN 79 (253)
T ss_pred CChhhCCeEEEEE-EEE--CCCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---ch----h---hhc
Confidence 3344455554421 111 235666664 3457889999999999999999861 22111 11 0 123
Q ss_pred ChhHHH-HHHHHHHHHHhccccccCCCcEEEeccccccc
Q 004605 145 TEPFKK-FMTLIVDMMKREKLFASQGGPIILAQVENEYG 182 (743)
Q Consensus 145 d~~y~~-~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg 182 (743)
++.-++ +.+.|++.++++++ =++.|+=|+.
T Consensus 80 ~~~~r~~fi~~lv~~~~~~~~--------DGIdiDwE~~ 110 (253)
T cd06545 80 DPAKRKALVDKIINYVVSYNL--------DGIDVDLEGP 110 (253)
T ss_pred CHHHHHHHHHHHHHHHHHhCC--------CceeEEeecc
Confidence 555555 88899999886443 2445666765
No 164
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=32.84 E-value=40 Score=33.24 Aligned_cols=63 Identities=14% Similarity=-0.011 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHcCCCEEEEceeC-CCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecCcc
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFW-NGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIGPF 119 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~W-n~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VIlrpGPy 119 (743)
+..++.++.++++|+..|.+...+ ..+....-.=+++ -...|.++.+.|++.|+.+.+.+-|+
T Consensus 71 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 71 EYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 456778999999999998886553 1222111111111 12477888899999999999999653
No 165
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.09 E-value=93 Score=24.73 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEE
Q 004605 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYM 112 (743)
Q Consensus 56 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V 112 (743)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44567788889999999998875 3333234455555432 4889999999999765
No 166
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.93 E-value=81 Score=35.02 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=49.9
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEce----------eCCCCCCC---------CCeeeecc-c--hhHHHHHH
Q 004605 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYV----------FWNGHELS---------PGKYYFGG-R--FNLVKFIK 103 (743)
Q Consensus 49 ~Hy~R~---~~~~W~~~l~k~Ka~G~N~V~~yv----------~Wn~hEp~---------~G~~dF~g-~--~dl~~fl~ 103 (743)
+|..|. ..+.-++.++++++.||-+=.+++ .|+...-. =+.++|.. . -|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 555664 455677889999999997665544 34432211 13333431 1 28999999
Q ss_pred HHHHcCcEEEEecCcccc
Q 004605 104 IIQQARMYMILRIGPFVA 121 (743)
Q Consensus 104 la~~~GL~VIlrpGPyi~ 121 (743)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 167
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.63 E-value=75 Score=33.64 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VI 113 (743)
.-|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|.
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVN 74 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCcee
Confidence 36999999999999999999432 1111 01112233 2468899999999999875
No 168
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=31.46 E-value=52 Score=36.24 Aligned_cols=114 Identities=17% Similarity=0.289 Sum_probs=60.8
Q ss_pred CEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHH
Q 004605 72 NTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK 150 (743)
Q Consensus 72 N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~ 150 (743)
+.|.++|.|++|=-. |. ...++.|+++|..|+= -.|. ||+.| ..|+.. + +.-+......
T Consensus 27 ~yiD~fvywsh~~i~iP~----------~~widaAHrnGV~vLG---Tiif-e~~~~--~~~~~~---l-l~~~~~g~~~ 86 (311)
T PF03644_consen 27 QYIDIFVYWSHGLITIPP----------AGWIDAAHRNGVKVLG---TIIF-EWGGG--AEWCEE---L-LEKDEDGSFP 86 (311)
T ss_dssp GG-SEEEET-TBSSE-------------HHHHHHHHHTT--EEE---EEEE-EEE----HHHHHH---H-T---TTS--H
T ss_pred cceeeEeecccccccCCC----------chhHHHHHhcCceEEE---EEEe-cCCch--HHHHHH---H-HcCCcccccH
Confidence 357788889865432 21 2589999999999952 2333 77643 355542 1 2212222233
Q ss_pred HHHHHHHHHHhccccccCCCcEEEecccccccccccccCcccHHHHHHHHHHHHh-cCCccceE
Q 004605 151 FMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVA-QNIGVPWI 213 (743)
Q Consensus 151 ~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~-~g~~vP~~ 213 (743)
+.++|+++.+-.+ =.| +++=+|+..+... ....-+.+++.|++.+++ -+..|-|+
T Consensus 87 ~A~kLi~ia~~yG----FDG--w~iN~E~~~~~~~--~~~~l~~F~~~l~~~~~~~~~~~v~WY 142 (311)
T PF03644_consen 87 YADKLIEIAKYYG----FDG--WLINIETPLSGPE--DAENLIDFLKYLRKEAHENPGSEVIWY 142 (311)
T ss_dssp HHHHHHHHHHHHT------E--EEEEEEESSTTGG--GHHHHHHHHHHHHHHHHHT-T-EEEEE
T ss_pred HHHHHHHHHHHcC----CCc--eEEEecccCCchh--HHHHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 7888888887433 234 7788888876310 012346788888888887 23344555
No 169
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.97 E-value=40 Score=32.44 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHcCcEEEEecCcccccccC-CCCCCeeecccCceeccCCChhHHHHHHHHHHHHHh
Q 004605 96 FNLVKFIKIIQQARMYMILRIGPFVAAEYN-YGGIPVWLHYIPGTVFRNDTEPFKKFMTLIVDMMKR 161 (743)
Q Consensus 96 ~dl~~fl~la~~~GL~VIlrpGPyi~aEw~-~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~i~~~l~~ 161 (743)
.||.-||++|++.|+.|++=.-| +++.|- +-| + +-..+.+++++|-.++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG----------~----~~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTG----------L----SKEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT----------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhC----------C----CHHHHHHHHHHHHHHHHH
Confidence 39999999999999998766655 456553 112 1 122334478888887764
No 170
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=30.43 E-value=58 Score=33.37 Aligned_cols=68 Identities=24% Similarity=0.277 Sum_probs=39.5
Q ss_pred CCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeee-eccchhHHH-HHHHHHHcCcEEEEecCccccc
Q 004605 51 YPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYY-FGGRFNLVK-FIKIIQQARMYMILRIGPFVAA 122 (743)
Q Consensus 51 y~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~d-F~g~~dl~~-fl~la~~~GL~VIlrpGPyi~a 122 (743)
+.|+..+|--..-+.+|+.||.++-.--.=..|....=-|- -.| .+++ .++| +..-++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG--EvE~~v~eL--~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG--EVERDVIEL--DFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc--hhhhhhhhc--cccEEEEecCcceecc
Confidence 45788889889999999999998765333333333221111 112 1111 1111 2335689999997763
No 171
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=30.42 E-value=81 Score=34.35 Aligned_cols=143 Identities=11% Similarity=0.062 Sum_probs=79.0
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee----CCCCCC----------------CCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVF----WNGHEL----------------SPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~----Wn~hEp----------------~~G~~dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
+.+..++.|+.|...++|++..++- |.+.-+ ..|.|.- .|+.++++.|++.|+.||-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEE
Confidence 6678899999999999999999876 754321 1223333 4999999999999999986
Q ss_pred ecCcccccccCCCCCCeeecccC-c-------eeccCCChhHHHHHHHHHHHHHhccccccCCCcEEEeccc-ccccccc
Q 004605 115 RIGPFVAAEYNYGGIPVWLHYIP-G-------TVFRNDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQVE-NEYGYYE 185 (743)
Q Consensus 115 rpGPyi~aEw~~GG~P~WL~~~p-~-------~~~Rt~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIE-NEyg~~~ 185 (743)
.+=---+++.-.-..|.-..... + -.+-..+|.=.++++.|++.+.+ ++ .++.| +|. .|+-...
T Consensus 91 EiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~--lf---~~~~i--HiGgDE~~~~~ 163 (303)
T cd02742 91 EIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAE--LF---PDRYL--HIGGDEAHFKQ 163 (303)
T ss_pred eccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHH--hC---CCCeE--EecceecCCCC
Confidence 55322233321222222111100 0 01222334334478888887773 33 12333 220 1221000
Q ss_pred cccCcccHHHHHHHHHHHHhcCC
Q 004605 186 SFYGEGGKRYALWAAKMAVAQNI 208 (743)
Q Consensus 186 ~~~~~~~~~y~~~L~~~~~~~g~ 208 (743)
.....-..|++.+.+.+++.|.
T Consensus 164 -~~~~l~~~f~~~~~~~v~~~g~ 185 (303)
T cd02742 164 -DRKHLMSQFIQRVLDIVKKKGK 185 (303)
T ss_pred -CHHHHHHHHHHHHHHHHHHcCC
Confidence 0000124577778888888774
No 172
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=30.35 E-value=1.1e+02 Score=35.53 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=46.1
Q ss_pred eeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 49 IHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 49 ~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.-|-+.|.+.-++.++++.+.|++.|++..+-|.. +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 45666788888899999999999999998876653 268889999999999886654
No 173
>PRK15492 triosephosphate isomerase; Provisional
Probab=30.33 E-value=1e+02 Score=33.10 Aligned_cols=49 Identities=14% Similarity=0.031 Sum_probs=38.6
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
..++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI----GHSERRH-KFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE----Ccccccc-ccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999999999 8888765 222 2345666678889999999999998
No 174
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=29.93 E-value=74 Score=34.00 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCEEEEceeCC--CCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004605 60 PGLVQQAKEGGVNTIESYVFWN--GHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~yv~Wn--~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VI 113 (743)
++.+++||++|++.|...+--+ .++..-+..+|+ +..+.++.|+++|+.|.
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~ 175 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVC 175 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEE
Confidence 6789999999999988854410 111111122333 55677888999999864
No 175
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.76 E-value=1.2e+02 Score=31.99 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
..|++.|+.++++|++.|+...-. .|+-.+ +++ ..+++++-++++++||.|..
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE
Confidence 359999999999999999983211 011111 121 24788899999999999863
No 176
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=29.68 E-value=50 Score=40.17 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCEEEE--------ce-eCCCCCCC----CCeeeec----cchhHHHHHHHHHHcCcEEEEec
Q 004605 60 PGLVQQAKEGGVNTIES--------YV-FWNGHELS----PGKYYFG----GRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~--------yv-~Wn~hEp~----~G~~dF~----g~~dl~~fl~la~~~GL~VIlrp 116 (743)
+++|..+|.+|+|+|+. |+ .|.++--. -+.|--. -.+++.++++.|+++||.|||-.
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 34588899999999995 22 34443210 0011000 02489999999999999999887
No 177
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=29.68 E-value=54 Score=34.86 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=38.4
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeee-ccchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYF-GGRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF-~g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
..++|++|++.|-+ +|-|.+. .| +.+..+.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR~---~f~Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII----GHSERRQ---YFGETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE----SCHHHHH---HST-BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe----ccccccC---ccccccHHHHHHHHHHHHCCCEEEEEec
Confidence 56899999999998 7777653 22 3556888999999999999999997
No 178
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=29.52 E-value=81 Score=38.60 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=40.3
Q ss_pred HHHHHHcCCCEEEE-ceeCCCCCCCC--------------------Ceeeecc-----chhHHHHHHHHHHcCcEEEEec
Q 004605 63 VQQAKEGGVNTIES-YVFWNGHELSP--------------------GKYYFGG-----RFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 63 l~k~Ka~G~N~V~~-yv~Wn~hEp~~--------------------G~~dF~g-----~~dl~~fl~la~~~GL~VIlrp 116 (743)
|.-+|.+|+++|+. .|+.-..++.. |.|-=+. .+.+..+++.++++||-|||-.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 89999999999996 57755555433 2222222 3588899999999999999876
No 179
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.46 E-value=18 Score=36.52 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=42.9
Q ss_pred EEEEEEeeCCCC---CCCChHHHHHHHHHcCCCEEE--EceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEe
Q 004605 43 LIISAAIHYPRS---VPGMWPGLVQQAKEGGVNTIE--SYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILR 115 (743)
Q Consensus 43 ~l~sG~~Hy~R~---~~~~W~~~l~k~Ka~G~N~V~--~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlr 115 (743)
..-+|--.|.|+ .|-.-++ -+.++|++.+- |-| .--.--|||-...+|.+|.++|+++||.+-|-
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P~---vaa~ag~DvaMvDTai-----KDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLPE---VAAEAGADVAMVDTAI-----KDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccHH---HHHhcCCCEEEEeccc-----ccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 344555556674 3444443 45678888654 322 11233689988889999999999999987654
No 180
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=29.11 E-value=34 Score=37.50 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=65.5
Q ss_pred eEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-EecCccc
Q 004605 42 ELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPFV 120 (743)
Q Consensus 42 ~~l~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VI-lrpGPyi 120 (743)
.++++-+..--+.| +.|++.+..+=++|+|.|+- +|+.-. |..+|.++|+++|..++ +|..|.-
T Consensus 35 ~liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~p~~~ 99 (301)
T PF07755_consen 35 TLIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRKPPKD 99 (301)
T ss_dssp EEEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS--SS
T ss_pred EEEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccCCCcc
Confidence 45555555444555 78999999999999999985 676444 67799999999999887 6653321
Q ss_pred ccccCCCCCCeeecccCceeccCCChhHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcccHHHH-HHH
Q 004605 121 AAEYNYGGIPVWLHYIPGTVFRNDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYA-LWA 199 (743)
Q Consensus 121 ~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~-~~L 199 (743)
. +.|-- . -.+-.+++|++= |.- .+.+|.+. ..|
T Consensus 100 ~--------~~~~g----------------------------~-~~~~~~~rv~~v-----GTD----cavGK~tTal~L 133 (301)
T PF07755_consen 100 L--------PVASG----------------------------R-IREVKAKRVLTV-----GTD----CAVGKMTTALEL 133 (301)
T ss_dssp -------------S----------------------------G-GGG-SSEEEEEE-----ESS----SSSSHHHHHHHH
T ss_pred c--------ccccC----------------------------c-cccCCCCEEEEE-----ccC----ccccHHHHHHHH
Confidence 0 00000 0 012245677662 532 23667765 567
Q ss_pred HHHHHhcCCccceEEecc
Q 004605 200 AKMAVAQNIGVPWIMCQQ 217 (743)
Q Consensus 200 ~~~~~~~g~~vP~~~~~~ 217 (743)
.+.+++.|++.-++-..|
T Consensus 134 ~~~l~~~G~~a~fvaTGQ 151 (301)
T PF07755_consen 134 RRALRERGINAGFVATGQ 151 (301)
T ss_dssp HHHHHHTT--EEEEE-SH
T ss_pred HHHHHHcCCCceEEecCC
Confidence 788899999987765444
No 181
>PLN02561 triosephosphate isomerase
Probab=29.04 E-value=1.1e+02 Score=32.68 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=38.8
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
.+++|++|++.|-+ +|-|.+. .|. -+..+.+=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~vii----GHSERR~---~f~Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL----GHSERRA---LLGESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE----CcccccC---ccCCChHHHHHHHHHHHHCcCEEEEEcC
Confidence 45899999999998 8888775 333 345667778889999999999998
No 182
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=28.93 E-value=1e+02 Score=35.19 Aligned_cols=69 Identities=10% Similarity=0.201 Sum_probs=46.0
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCccccccc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAAEY 124 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi~aEw 124 (743)
..+...+.++.+|+.|+-.=...+-..+.. ..+.|.|+.. -|..++++.+++.|++|++..-|+|.-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 355567899999999988766655433333 4445555432 28999999999999999999988886544
No 183
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=28.46 E-value=93 Score=33.77 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=42.8
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCC--CCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHEL--SPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++...++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 3667889999999999999999875422111 11211122 2378899999999999887765
No 184
>PRK14567 triosephosphate isomerase; Provisional
Probab=28.36 E-value=1.2e+02 Score=32.55 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
..++|++|++.|-+ +|-|.+. .|. +.+..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI----GHSERRS-LFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE----CcccccC-ccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 35899999999998 8888765 221 2345667778889999999999998
No 185
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.26 E-value=69 Score=33.74 Aligned_cols=60 Identities=13% Similarity=-0.013 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecC
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
+.+++.++.++++|++.|.+.-.-...++.. .=.++ -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 3467889999999999998631100001111 00011 114678888999999999999983
No 186
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.80 E-value=66 Score=33.74 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 58 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
..++.++.++++|+.+|.+...+.-....+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 36778889999999999774332211111111100112466777888999999999998
No 187
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.96 E-value=1.2e+02 Score=30.73 Aligned_cols=44 Identities=16% Similarity=0.403 Sum_probs=38.8
Q ss_pred HHHHHHcCCCEEE-----EceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEe
Q 004605 63 VQQAKEGGVNTIE-----SYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILR 115 (743)
Q Consensus 63 l~k~Ka~G~N~V~-----~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlr 115 (743)
.+.+++.|+.+|= |-|+|.--+.+| .+.++++.++++|+.|++-
T Consensus 20 ~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred HHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 5678999999886 678999999999 8999999999999998764
No 188
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=26.21 E-value=1.4e+02 Score=32.01 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=52.4
Q ss_pred eEEEEEEeeCCCCCCCC-h---HHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEE--EEe
Q 004605 42 ELIISAAIHYPRSVPGM-W---PGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYM--ILR 115 (743)
Q Consensus 42 ~~l~sG~~Hy~R~~~~~-W---~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V--Ilr 115 (743)
.+-+++..|+.+-|... - .++|++-.++|.+.+-| .=.||.+ .+.+|++.|++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iT----------Q~~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAIT----------QLFFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEee----------ccccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 36788889887654432 2 24455666799999988 3345555 7889999999997654 444
Q ss_pred cCccc-------ccccCCCCCCeeecc
Q 004605 116 IGPFV-------AAEYNYGGIPVWLHY 135 (743)
Q Consensus 116 pGPyi-------~aEw~~GG~P~WL~~ 135 (743)
.-|-. ..+|..-.+|.|+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~ 218 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVK 218 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHH
Confidence 44422 223555667777764
No 189
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.21 E-value=1.5e+02 Score=31.92 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEe
Q 004605 54 SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILR 115 (743)
Q Consensus 54 ~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlr 115 (743)
.|.+.=++++++..+.|+..|+++++.+. ...+...++.|+++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEE
Confidence 45556788999999999999999887664 137889999999999988753
No 190
>PLN03036 glutamine synthetase; Provisional
Probab=26.21 E-value=1.7e+02 Score=33.83 Aligned_cols=63 Identities=22% Similarity=0.423 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeec-c---------chhHHHHH--HHHHHcCcEEEEecCcccccccCCC
Q 004605 60 PGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG-G---------RFNLVKFI--KIIQQARMYMILRIGPFVAAEYNYG 127 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g---------~~dl~~fl--~la~~~GL~VIlrpGPyi~aEw~~G 127 (743)
++..+.+.++|++.-.+ +||-.||||.|. + +..+-+++ ++|+++|+.+-+-|=|+. ++|+.-
T Consensus 233 ~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~GS 306 (432)
T PLN03036 233 DAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWNGA 306 (432)
T ss_pred HHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcCCC
Confidence 34455778999997765 899999999886 2 12232333 678999999999888853 567766
Q ss_pred C
Q 004605 128 G 128 (743)
Q Consensus 128 G 128 (743)
|
T Consensus 307 G 307 (432)
T PLN03036 307 G 307 (432)
T ss_pred C
Confidence 6
No 191
>PRK04302 triosephosphate isomerase; Provisional
Probab=25.73 E-value=1.2e+02 Score=31.44 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=42.8
Q ss_pred eeCCCCCCCCh--HHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCc
Q 004605 49 IHYPRSVPGMW--PGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (743)
Q Consensus 49 ~Hy~R~~~~~W--~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGP 118 (743)
.|+....+... +.-++++|++|++.|-+ .+-|.. -.|. .+.++++.|+++||.+|+..|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 57766443322 23488999999999987 444433 2333 6889999999999999998864
No 192
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=24.96 E-value=74 Score=34.75 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcC--cEEEEecCccc-------ccccCCCCCCee
Q 004605 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQAR--MYMILRIGPFV-------AAEYNYGGIPVW 132 (743)
Q Consensus 62 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~G--L~VIlrpGPyi-------~aEw~~GG~P~W 132 (743)
+|++-.++|.+.+-| +=.||.+ .+.+|++.|++.| +.|+...-|-. .++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iT----------Q~~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAIT----------QFFFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeec----------ccccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 455555689998888 3345555 8889999999999 55666665622 157777788999
Q ss_pred ecc
Q 004605 133 LHY 135 (743)
Q Consensus 133 L~~ 135 (743)
+.+
T Consensus 235 l~~ 237 (296)
T PRK09432 235 MAK 237 (296)
T ss_pred HHH
Confidence 875
No 193
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=24.89 E-value=53 Score=34.06 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=20.7
Q ss_pred CCCC-CCeEEec----CCCceEEEEEcCcccccccc
Q 004605 635 PPGD-EPIGLDM----LKMGKGLAWLNGEEIGRYWP 665 (743)
Q Consensus 635 ~~~~-d~~~Ld~----~g~gKG~vwVNG~~iGRYW~ 665 (743)
|+|+ .+|+|.| ..-.+|.|||||++|.|.=.
T Consensus 36 pSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 36 PSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc
Confidence 4444 2455543 22367999999999999754
No 194
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=24.86 E-value=1.5e+02 Score=25.63 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=28.2
Q ss_pred eEEecccceEEEEEECCEEEEEEeCCCCCCCceEeeccccCCCccE-EEEEEec
Q 004605 500 VLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNE-IALLSMT 552 (743)
Q Consensus 500 ~L~i~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~-L~ILven 552 (743)
.|........+.|.|||..+.... ....++|..|.|. |.|.|.+
T Consensus 28 ~v~a~~~~~~a~v~vng~~~~~~~---------~~~~i~L~~G~n~~i~i~Vta 72 (88)
T PF12733_consen 28 TVTATPEDSGATVTVNGVPVNSGG---------YSATIPLNEGENTVITITVTA 72 (88)
T ss_pred EEEEEECCCCEEEEEcCEEccCCC---------cceeeEccCCCceEEEEEEEc
Confidence 344444567899999998765421 1122456778888 8888843
No 195
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=24.80 E-value=95 Score=32.93 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=38.1
Q ss_pred EECCEEeEEEEEEeeCCCC-CCCChHHHHHHHHHcCCCEEEE-ceeCCCCC-CCCCee
Q 004605 36 IINGRRELIISAAIHYPRS-VPGMWPGLVQQAKEGGVNTIES-YVFWNGHE-LSPGKY 90 (743)
Q Consensus 36 ~~dGkp~~l~sG~~Hy~R~-~~~~W~~~l~k~Ka~G~N~V~~-yv~Wn~hE-p~~G~~ 90 (743)
.+.|+++..+.|.+|+... ...+-+--++.||++|+..|=. --.=++++ -+||.+
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~tna~Gsl~~~~~pGdl 104 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLILTNAAGGLRQDWGPGTP 104 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEEEcccccCCCCCCCCCE
Confidence 5789999999999997765 3444578899999999987643 22223333 256654
No 196
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=24.50 E-value=78 Score=32.96 Aligned_cols=59 Identities=7% Similarity=-0.110 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCC-CCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHE-LSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hE-p~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
+.+++.++.++++|+.+|.+...+..-+ +.+-.++ .-...+.++.++|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARA-TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHH-HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 5677888999999999998632221000 0010000 012357788899999999999987
No 197
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.80 E-value=1.3e+02 Score=32.23 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=55.4
Q ss_pred eEEEeCCcEEECCEEeEEEEEEeeCCCC-CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeec--cchhHHHHHH
Q 004605 27 NVTYDSRSLIINGRRELIISAAIHYPRS-VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG--GRFNLVKFIK 103 (743)
Q Consensus 27 ~v~~d~~~f~~dGkp~~l~sG~~Hy~R~-~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~--g~~dl~~fl~ 103 (743)
.|.+ ..+.+.+..++++.| +-.+ ..+.-.+..+.+|+.|....+.|++=+...| +.|. |..-|..+-+
T Consensus 13 ~i~~--~~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~ 83 (260)
T TIGR01361 13 VVDV--GGVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRR 83 (260)
T ss_pred EEEE--CCEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHH
Confidence 3555 335566544666777 2222 4555667788889999998888877654444 3455 4567888889
Q ss_pred HHHHcCcEEEEec
Q 004605 104 IIQQARMYMILRI 116 (743)
Q Consensus 104 la~~~GL~VIlrp 116 (743)
.|++.||.++..|
T Consensus 84 ~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 84 AADEHGLPVVTEV 96 (260)
T ss_pred HHHHhCCCEEEee
Confidence 9999999998877
No 198
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=23.72 E-value=1e+02 Score=34.70 Aligned_cols=44 Identities=20% Similarity=0.556 Sum_probs=36.6
Q ss_pred CCCCCeeeec-c---------chhHHHHH--HHHHHcCcEEEEecCcccccccCCCC
Q 004605 84 ELSPGKYYFG-G---------RFNLVKFI--KIIQQARMYMILRIGPFVAAEYNYGG 128 (743)
Q Consensus 84 Ep~~G~~dF~-g---------~~dl~~fl--~la~~~GL~VIlrpGPyi~aEw~~GG 128 (743)
|-.||||.|+ | +.+..+++ +.|.+.|+.+-+-|=| +.+.|+..|
T Consensus 203 EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG 258 (380)
T KOG0683|consen 203 EVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAG 258 (380)
T ss_pred cccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCcc
Confidence 5789999995 2 46777777 7899999999999977 899999866
No 199
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=23.60 E-value=4.7e+02 Score=28.58 Aligned_cols=120 Identities=10% Similarity=-0.011 Sum_probs=78.7
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeec
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~ 134 (743)
.-+.-+.+|+.+|.-+. .|++|- +.-+-|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45678899999998887 999973 122367788999999999999876 333
Q ss_pred ccCceeccCCChhHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcccHHHHHHHHHHHHhcCCccceEE
Q 004605 135 YIPGTVFRNDTEPFKKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIM 214 (743)
Q Consensus 135 ~~p~~~~Rt~d~~y~~~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~vP~~~ 214 (743)
. |-.+-. -+.++..+.+ +..-..|-.+-|.||-=.-.+.-...--+|+...|.++++.|.++|+.+
T Consensus 111 d---------d~~~~~-~~til~ay~~----~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T 176 (305)
T COG5309 111 D---------DIHDAV-EKTILSAYLP----YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTT 176 (305)
T ss_pred c---------chhhhH-HHHHHHHHhc----cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceee
Confidence 2 111110 1122222221 2333578899999995321110012345799999999999999999888
Q ss_pred eccc
Q 004605 215 CQQF 218 (743)
Q Consensus 215 ~~~~ 218 (743)
.++.
T Consensus 177 ~dsw 180 (305)
T COG5309 177 VDSW 180 (305)
T ss_pred cccc
Confidence 7664
No 200
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=23.34 E-value=1.2e+02 Score=35.78 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHcCCCEEEEceeCCCCCCCC---CeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSP---GKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 58 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~---G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.++++++.||++|+++-|.-|-|+..=|.- +..+-.|......+|+...++|+..++-.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL 153 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL 153 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 588999999999999999999999877743 45777788888899999999999876554
No 201
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.20 E-value=2.7e+02 Score=22.61 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHcCCCEEEEcee-CCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVF-WNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~-Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VI 113 (743)
..-.+.++.+.+.|+|..+++.. ....+...-.+.+++ .+.+++++..++.|..|+
T Consensus 13 G~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 13 GQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 45667888899999999999753 111111122445544 456699999999997654
No 202
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=22.68 E-value=3.6e+02 Score=27.24 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHcCcEEEEecCcccccccCC-----C--CCCeeecccCc
Q 004605 96 FNLVKFIKIIQQARMYMILRIGPFVAAEYNY-----G--GIPVWLHYIPG 138 (743)
Q Consensus 96 ~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~-----G--G~P~WL~~~p~ 138 (743)
+.+..|++.+++.|.++++=.+++-....-. . ..|.|+.+.+.
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 4577899999989998888777754322111 1 23589987653
No 203
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=22.55 E-value=5.8e+02 Score=24.67 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=61.6
Q ss_pred Ceeeeccchh-HHHHHHHHHHc-CcEEEEecCcccccccCCCCCCeeecccCceeccCCChhHHH-HHHHHHHHHHhccc
Q 004605 88 GKYYFGGRFN-LVKFIKIIQQA-RMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKK-FMTLIVDMMKREKL 164 (743)
Q Consensus 88 G~~dF~g~~d-l~~fl~la~~~-GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~-~~~~i~~~l~~~~~ 164 (743)
|.|=++.... +..|++...+. ...+|.|--|=..-++ +-...||.+.++- ++=+|.-+. -.+.+.+.++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~--~~I~Pt~L~~l~~~i~~fl~---- 72 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE--NAISPTNLHKLLDTIVRFLK---- 72 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC--CccCchhhHHHHHHHHHHHH----
Confidence 4555654333 66777777444 5778899555444444 4566799986531 344554444 2333444443
Q ss_pred cccCCCcEEEec------ccccccccccccCcccHHHHHHHHHHHHhcCCc
Q 004605 165 FASQGGPIILAQ------VENEYGYYESFYGEGGKRYALWAAKMAVAQNIG 209 (743)
Q Consensus 165 ~~~~gGpII~~Q------IENEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~ 209 (743)
.+++.||.+. +||.+- .--+|+..|++.+...+-.
T Consensus 73 --~~~~~vViiD~lEYL~l~NgF~--------~v~KFL~~LkD~~~~~~~~ 113 (136)
T PF05763_consen 73 --ENGNGVVIIDGLEYLILENGFE--------SVLKFLASLKDYALLNNGT 113 (136)
T ss_pred --hCCCcEEEEecHHHHHHHcCHH--------HHHHHHHHhHHHeeccCCE
Confidence 3455688877 555553 2457999999998665443
No 204
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.53 E-value=1.6e+02 Score=32.29 Aligned_cols=139 Identities=13% Similarity=0.101 Sum_probs=77.9
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee--CCCC---CCC------------------------CCeeeeccchhHHHHHHHH
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVF--WNGH---ELS------------------------PGKYYFGGRFNLVKFIKII 105 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~--Wn~h---Ep~------------------------~G~~dF~g~~dl~~fl~la 105 (743)
+.+..++.|+.|...++|++..++- |.+- .|. .|.|. ..|+.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 6888999999999999999997653 3321 111 12222 35999999999
Q ss_pred HHcCcEEEEecCcccccccCCCCCCeeecccCceecc------------CCChhHHHHHHHHHHHHHhccccccCCCcEE
Q 004605 106 QQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFR------------NDTEPFKKFMTLIVDMMKREKLFASQGGPII 173 (743)
Q Consensus 106 ~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~~p~~~~R------------t~d~~y~~~~~~i~~~l~~~~~~~~~gGpII 173 (743)
++.|+.||-.+----+++ +|+...|+...+ -.+|.=.++++.|+..+++ ++ ...++.|
T Consensus 92 ~~rgI~vIPEID~PGH~~-------a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~--~f-~~~~~~~ 161 (326)
T cd06564 92 KDRGVNIIPEIDSPGHSL-------AFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLD--GF-NPKSDTV 161 (326)
T ss_pred HHcCCeEeccCCCcHHHH-------HHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHH--hc-CCCCCEE
Confidence 999999986542111221 233323322221 1234444488888887773 32 2112332
Q ss_pred Eeccc-ccccccccccCcccHHHHHHHHHHHHhcCCc
Q 004605 174 LAQVE-NEYGYYESFYGEGGKRYALWAAKMAVAQNIG 209 (743)
Q Consensus 174 ~~QIE-NEyg~~~~~~~~~~~~y~~~L~~~~~~~g~~ 209 (743)
+|. .|+-... .....-..|++.+.+.+++.|..
T Consensus 162 --HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk~ 195 (326)
T cd06564 162 --HIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGKT 195 (326)
T ss_pred --EeccccccccC-ccHHHHHHHHHHHHHHHHHcCCe
Confidence 221 1221100 00011246788888888888765
No 205
>PLN02389 biotin synthase
Probab=22.06 E-value=1.1e+02 Score=34.66 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHcCCCEEEEceeCCCCCCCCCee-------eeccchhHHHHHHHHHHcCcEE
Q 004605 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKY-------YFGGRFNLVKFIKIIQQARMYM 112 (743)
Q Consensus 58 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~-------dF~g~~dl~~fl~la~~~GL~V 112 (743)
.=++.++++|++|++.+.. ++.- .+..| +|+ +..+.++.|++.||.|
T Consensus 176 l~~E~l~~LkeAGld~~~~----~LeT-s~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNH----NLDT-SREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred CCHHHHHHHHHcCCCEEEe----eecC-ChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
Confidence 4478899999999998876 3321 22122 333 5668889999999976
No 206
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=22.01 E-value=2.2e+02 Score=32.12 Aligned_cols=65 Identities=17% Similarity=0.316 Sum_probs=48.3
Q ss_pred EEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 004605 40 RRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 40 kp~~l~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
++++++.|..- .....+++..+.+++.|+.++.. +-.+|.| +++ ++++.++++++.+..+|+-.|
T Consensus 32 ~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f----~~v~~np---~~~---~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 32 TRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIY----DGTQPNP---TTE---NVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred CEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEe----CCCCCCc---CHH---HHHHHHHHHHHcCCCEEEEeC
Confidence 78888877411 12467888888899999874333 5666666 233 788999999999999999997
No 207
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=21.83 E-value=1.2e+02 Score=32.07 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-EecCccccc
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPFVAA 122 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VI-lrpGPyi~a 122 (743)
+.-.+.++++|++|+- |+. +.+|.+ +-++.|++.|-..| |-+|||..|
T Consensus 110 ~~l~~~i~~l~~~gI~-VSL-----FiDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 110 EKLKPIIERLKDAGIR-VSL-----FIDPDP------------EQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred HHHHHHHHHHHHCCCE-EEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 4456788999999994 666 345655 67999999999987 999999754
No 208
>PRK06852 aldolase; Validated
Probab=21.82 E-value=2.2e+02 Score=31.45 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHcC------CCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCC
Q 004605 57 GMWPGLVQQAKEGG------VNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIP 130 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G------~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P 130 (743)
..|-+ ++.+-++| ..+|.+.++|. +.+..+-..+|.+..+.|++.||-+|+..=| .|
T Consensus 116 ~l~~s-VeeAvrlG~~~~~~AdAV~v~v~~G------s~~E~~ml~~l~~v~~ea~~~GlPll~~~yp-------rG--- 178 (304)
T PRK06852 116 RQLLD-VEQVVEFKENSGLNILGVGYTIYLG------SEYESEMLSEAAQIIYEAHKHGLIAVLWIYP-------RG--- 178 (304)
T ss_pred cceec-HHHHHhcCCccCCCceEEEEEEecC------CHHHHHHHHHHHHHHHHHHHhCCcEEEEeec-------cC---
Confidence 34433 34455555 77999999997 2222334458999999999999999875411 11
Q ss_pred eeecccCceeccCCChhHHHHHHHHHHHH
Q 004605 131 VWLHYIPGTVFRNDTEPFKKFMTLIVDMM 159 (743)
Q Consensus 131 ~WL~~~p~~~~Rt~d~~y~~~~~~i~~~l 159 (743)
+.+ -...++.+..+..+|...|
T Consensus 179 ------~~i-~~~~~~~~ia~aaRiaaEL 200 (304)
T PRK06852 179 ------KAV-KDEKDPHLIAGAAGVAACL 200 (304)
T ss_pred ------ccc-CCCccHHHHHHHHHHHHHH
Confidence 112 2334667777777777666
No 209
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=21.72 E-value=1.1e+02 Score=36.75 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=59.2
Q ss_pred CCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 004605 38 NGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (743)
Q Consensus 38 dGkp~~l~sG~~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpG 117 (743)
++++-+.+++..|+.+.+.+.=-++|.+-.++|.+-+-|-.++ |.+ .+.+|++.|++.++.+|...-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~f----------d~~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVY----------DEE---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccC----------CHH---HHHHHHHHHhcCCCCEEEEee
Confidence 3445678899998776654444455666667999999995544 333 788899888888888888887
Q ss_pred ccc--------ccccCCCCCCeeecc
Q 004605 118 PFV--------AAEYNYGGIPVWLHY 135 (743)
Q Consensus 118 Pyi--------~aEw~~GG~P~WL~~ 135 (743)
|-. ..+|..-=+|.|+.+
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~ 551 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRE 551 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHH
Confidence 733 223555557888875
No 210
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.54 E-value=1.4e+02 Score=35.93 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=44.6
Q ss_pred eeCCCCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 004605 49 IHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (743)
Q Consensus 49 ~Hy~R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIl 114 (743)
+=|.|.|.+.-+..++++++.|+..|++....|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 45667777888889999999999999998766653 3788999999999998643
No 211
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=21.43 E-value=1.8e+02 Score=27.85 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 57 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
..-++.++++++.|+.+|.+ .-|.... ....+.+.+++.|+.|+...
T Consensus 16 ~~~~e~v~~A~~~Gl~~i~i----TDH~~~~---------~~~~~~~~~~~~~i~vi~G~ 62 (175)
T PF02811_consen 16 DSPEEYVEQAKEKGLDAIAI----TDHNNFA---------GYPDFYKEAKKKGIKVIPGV 62 (175)
T ss_dssp SSHHHHHHHHHHTTESEEEE----EEETTTT---------THHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEE----cCCcccc---------cchHHHHHHHhcCCceEEeE
Confidence 35688899999999999998 5553333 46788999999999988754
No 212
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.43 E-value=4.1e+02 Score=20.93 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCe----eeec--cchhHHHHHHHHHHcCcEEE
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGK----YYFG--GRFNLVKFIKIIQQARMYMI 113 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~----~dF~--g~~dl~~fl~la~~~GL~VI 113 (743)
.|....+.++.+.+.|+|.+++...=....-.+|. +.++ +..+++.+++..++.|..|.
T Consensus 8 ~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 8 RPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 35668899999999999999874321111001333 3333 34678899999999997663
No 213
>PLN02231 alanine transaminase
Probab=21.32 E-value=2.2e+02 Score=33.72 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=42.0
Q ss_pred CCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEe
Q 004605 53 RSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILR 115 (743)
Q Consensus 53 R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlr 115 (743)
.+..+..++.++..+..|+++--+++. |-|.|.=-+++=+ .+.+++++|+++|++||.-
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 344455555565556666666445555 7788887777655 8999999999999998854
No 214
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=21.24 E-value=1.8e+02 Score=30.80 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeec-----cc-----hhHHHHH--HHHHHcCcEEEEecCccc
Q 004605 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG-----GR-----FNLVKFI--KIIQQARMYMILRIGPFV 120 (743)
Q Consensus 56 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~-----g~-----~dl~~fl--~la~~~GL~VIlrpGPyi 120 (743)
.+..++.++.+.++|+++-.. +||-.||||.+. +. ..+.+.+ ++|+++||.+-+-|=|+.
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 345678889999999976665 899999999774 11 1222222 668999999999998864
No 215
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.23 E-value=1.3e+02 Score=33.87 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 58 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
.|..-|+.+++.|++.|..+...-.-....+. .-...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~------~~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK------IVPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc------cCCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987764322222211111 123588999999999999776
No 216
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=21.13 E-value=2.1e+02 Score=29.81 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=28.4
Q ss_pred hHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchh---HHHHHHHHHHcCcEEEEec
Q 004605 59 WPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFN---LVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 59 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~d---l~~fl~la~~~GL~VIlrp 116 (743)
-+..+.++|+||.+.|-.| ...|.+- |..+-+.|.++|+++ .|
T Consensus 137 vetAiaml~dmG~~SiKff-------------Pm~Gl~~leE~~avAkA~a~~g~~l--EP 182 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFF-------------PMGGLKHLEELKAVAKACARNGFTL--EP 182 (218)
T ss_dssp HHHHHHHHHHTT--EEEE----------------TTTTTHHHHHHHHHHHHHCT-EE--EE
T ss_pred HHHHHHHHHHcCCCeeeEe-------------ecCCcccHHHHHHHHHHHHHcCcee--CC
Confidence 5678999999999999873 2334444 445557789999998 77
No 217
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.02 E-value=1e+02 Score=34.63 Aligned_cols=50 Identities=18% Similarity=0.011 Sum_probs=35.1
Q ss_pred hHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeecc----chhHHHHHHHHHHcCcEE
Q 004605 59 WPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGG----RFNLVKFIKIIQQARMYM 112 (743)
Q Consensus 59 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g----~~dl~~fl~la~~~GL~V 112 (743)
=++.|+.||++|+|.|++. ...-.+-..+.-| ..+..+.++.|++.|+..
T Consensus 106 ~~e~l~~Lk~~Gv~risiG----vqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIG----VQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRS 159 (378)
T ss_pred CHHHHHHHHHcCCCEEEec----cCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 3588999999999999994 4433333333322 237778899999999853
No 218
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.85 E-value=1.1e+02 Score=34.06 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccc----hhHHHHHHHHHHcCcE
Q 004605 60 PGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR----FNLVKFIKIIQQARMY 111 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~----~dl~~fl~la~~~GL~ 111 (743)
++.|+.||++|+|.|++.| ..-.+...+.-|+ .++.+.++.+++.|+.
T Consensus 100 ~e~l~~l~~~Gv~risiGv----qS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV----QSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred HHHHHHHHHcCCCEEEEec----ccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 5778999999999999943 3333333333322 3788889999999985
No 219
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=20.78 E-value=1.2e+02 Score=33.67 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=27.8
Q ss_pred eCCcEEECCEEeEEEEEEeeCCCCC-CCChHHHH-HHHHHcCCCEEEE
Q 004605 31 DSRSLIINGRRELIISAAIHYPRSV-PGMWPGLV-QQAKEGGVNTIES 76 (743)
Q Consensus 31 d~~~f~~dGkp~~l~sG~~Hy~R~~-~~~W~~~l-~k~Ka~G~N~V~~ 76 (743)
|.+.+.|||||++++ +.+..++ ...+-+.+ +.+|++|+.-|-+
T Consensus 150 D~rYikVdGKPv~~I---y~p~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLI---YRPGDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEE---ECcccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 578899999999887 3333332 22333334 4668899996554
No 220
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=20.77 E-value=1.1e+02 Score=34.30 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 004605 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (743)
Q Consensus 63 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrp 116 (743)
++.+-++|..+|.+.|+|.- .+...-..+|.+..+.|++.||-||++.
T Consensus 152 VedAlrLGAdAV~~tvy~Gs------~~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGS------EESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred HHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 66788899999999999972 1222334589999999999999999865
No 221
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.74 E-value=1.4e+02 Score=27.73 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=41.2
Q ss_pred EEEeCCcEEECCEEeEEEEEEe-eCC-----CCCCCChHHHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHH
Q 004605 28 VTYDSRSLIINGRRELIISAAI-HYP-----RSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKF 101 (743)
Q Consensus 28 v~~d~~~f~~dGkp~~l~sG~~-Hy~-----R~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~f 101 (743)
+-++.+.=.++|.+..---.+. ... -.+++...+.++.+++.|+..|=.. +| ..-.++
T Consensus 31 ~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~ 94 (116)
T PF13380_consen 31 YPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEEL 94 (116)
T ss_dssp EEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHH
T ss_pred EEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHH
Confidence 4444455667776632211111 000 1478889999999999998877651 22 255688
Q ss_pred HHHHHHcCcEEE
Q 004605 102 IKIIQQARMYMI 113 (743)
Q Consensus 102 l~la~~~GL~VI 113 (743)
+++|+++||.++
T Consensus 95 ~~~a~~~gi~vi 106 (116)
T PF13380_consen 95 IEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHTT-EEE
T ss_pred HHHHHHcCCEEE
Confidence 999999999965
No 222
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=20.63 E-value=3.1e+02 Score=30.30 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCeeecc
Q 004605 61 GLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (743)
Q Consensus 61 ~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VIlrpGPyi~aEw~~GG~P~WL~~ 135 (743)
..+...++.|.+||-.- .+ =.=.||..++.+.+++.||.+|..+|.|.-+.|+ .|+..
T Consensus 52 ~e~~~~~a~Gg~TIVD~--------T~----~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~ 109 (316)
T COG1735 52 AELKRLMARGGQTIVDA--------TN----IGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFAL 109 (316)
T ss_pred HHHHHHHHcCCCeEeeC--------Cc----cccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhh
Confidence 35666677899988651 11 0113799999999999999999999999987775 66653
No 223
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=20.45 E-value=3e+02 Score=30.26 Aligned_cols=68 Identities=19% Similarity=0.355 Sum_probs=49.0
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee-CCC-CCCCCCe-----eeeccc--hhHHHHHHHHHHcCcEEEEecCccccc
Q 004605 55 VPGMWPGLVQQAKEGGVNTIESYVF-WNG-HELSPGK-----YYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAA 122 (743)
Q Consensus 55 ~~~~W~~~l~k~Ka~G~N~V~~yv~-Wn~-hEp~~G~-----~dF~g~--~dl~~fl~la~~~GL~VIlrpGPyi~a 122 (743)
+.+.-++.++++++.||-+=.+++= |.. ++..-|. |+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 6667789999999999887666653 532 2222232 344332 389999999999999999998888753
No 224
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.02 E-value=6.4e+02 Score=28.39 Aligned_cols=115 Identities=22% Similarity=0.412 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCCEEEEceeCCCCCCCCCee-eecc--chhHHHHHHHH---HHcCcEEEEecCcccccccCCCCCCeee
Q 004605 60 PGLVQQAKEGGVNTIESYVFWNGHELSPGKY-YFGG--RFNLVKFIKII---QQARMYMILRIGPFVAAEYNYGGIPVWL 133 (743)
Q Consensus 60 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~~-dF~g--~~dl~~fl~la---~~~GL~VIlrpGPyi~aEw~~GG~P~WL 133 (743)
++.++.+.++|++-|.. +.|.-.|-.= -..| ..|+++.+++| .+.|+.|++-| .||
T Consensus 204 ~~lv~eLeeAGLdRiNl----Sv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaP--------------v~l 265 (414)
T COG2100 204 KKLVDELEEAGLDRINL----SVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAP--------------VWL 265 (414)
T ss_pred HHHHHHHHHhCCceEEe----ecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEee--------------eec
Confidence 45566777788887777 5554433110 0112 23566666654 66899998865 566
Q ss_pred cccCceeccCCChhHHH---HHHHHHHHHHhccccccCCCcEEEecccccccccccccCc--------ccHHHHHHHHHH
Q 004605 134 HYIPGTVFRNDTEPFKK---FMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGE--------GGKRYALWAAKM 202 (743)
Q Consensus 134 ~~~p~~~~Rt~d~~y~~---~~~~i~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~~~--------~~~~y~~~L~~~ 202 (743)
. ++ ||..+.+ |.++|. ++.+=|.+++|--=+|- ||. .-++|-+||+++
T Consensus 266 P---G~----ND~E~~~iIe~A~~iG---------aGkk~p~lgiQkyipyk-----~GRkp~~~k~~~fkeFYrwLrel 324 (414)
T COG2100 266 P---GV----NDDEMPKIIEWAREIG---------AGKKWPPLGIQKYIPYK-----FGRKPVIAKVWPFKEFYRWLREL 324 (414)
T ss_pred C---Cc----ChHHHHHHHHHHHHhC---------CCCCCCCcceEEeeeec-----ccCCccccccCcHHHHHHHHHHH
Confidence 4 33 5544433 444332 34555777888544442 221 246899999999
Q ss_pred HHhcCCccceEE
Q 004605 203 AVAQNIGVPWIM 214 (743)
Q Consensus 203 ~~~~g~~vP~~~ 214 (743)
-++.|+. |++.
T Consensus 325 Eketg~k-pLil 335 (414)
T COG2100 325 EKETGVK-PLIL 335 (414)
T ss_pred HHHhCCC-cccc
Confidence 9998765 4554
Done!