Query 004606
Match_columns 743
No_of_seqs 144 out of 834
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:06:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2352 Ppc Phosphoenolpyruvat 100.0 3E-143 6E-148 1214.9 59.3 563 13-733 5-585 (910)
2 PTZ00398 phosphoenolpyruvate c 100.0 6E-142 1E-146 1254.6 66.8 584 13-733 46-645 (974)
3 PRK00009 phosphoenolpyruvate c 100.0 2E-139 4E-144 1227.7 65.4 566 13-733 5-588 (911)
4 PF00311 PEPcase: Phosphoenolp 100.0 6E-118 1E-122 1037.5 37.7 454 144-733 1-465 (794)
5 PRK13655 phosphoenolpyruvate c 99.9 1.7E-22 3.7E-27 225.3 10.2 101 624-732 114-222 (494)
6 TIGR02751 PEPCase_arch phospho 99.7 7.1E-17 1.5E-21 180.9 11.0 97 627-732 116-230 (506)
7 PF14010 PEPcase_2: Phosphoeno 96.5 0.0038 8.3E-08 71.3 5.8 93 623-723 111-213 (491)
8 COG1892 Phosphoenolpyruvate ca 88.5 0.89 1.9E-05 51.8 6.3 102 612-723 96-215 (488)
9 PF03328 HpcH_HpaI: HpcH/HpaI 82.9 3.2 6.9E-05 42.6 6.7 136 540-722 11-154 (221)
10 PRK10558 alpha-dehydro-beta-de 78.2 4.7 0.0001 43.1 6.2 135 543-722 33-180 (256)
11 TIGR03239 GarL 2-dehydro-3-deo 76.9 5.5 0.00012 42.4 6.3 121 543-693 26-159 (249)
12 PF12897 Aminotran_MocR: Alani 71.2 4.7 0.0001 45.9 4.2 74 632-705 344-422 (425)
13 TIGR03191 benz_CoA_bzdO benzoy 58.5 62 0.0013 37.3 10.2 134 135-274 124-272 (430)
14 PF04852 DUF640: Protein of un 56.3 20 0.00044 35.0 4.9 40 231-301 92-131 (132)
15 TIGR01064 pyruv_kin pyruvate k 55.5 32 0.00069 40.1 7.3 59 621-694 177-235 (473)
16 TIGR01588 citE citrate lyase, 52.9 31 0.00068 37.3 6.4 56 632-693 86-141 (288)
17 PF02526 GBP_repeat: Glycophor 52.9 12 0.00026 28.7 2.2 18 689-706 7-24 (38)
18 PF12133 Sars6: Open reading f 50.3 4.6 0.0001 33.8 -0.3 45 542-591 15-59 (62)
19 PRK08187 pyruvate kinase; Vali 41.9 72 0.0016 37.6 7.4 71 632-723 325-395 (493)
20 TIGR02311 HpaI 2,4-dihydroxyhe 31.0 1.5E+02 0.0032 31.6 7.2 67 624-693 80-160 (249)
21 TIGR01093 aroD 3-dehydroquinat 28.7 2.9E+02 0.0064 28.7 8.8 45 610-656 130-174 (228)
22 PF09713 A_thal_3526: Plant pr 28.7 39 0.00084 28.5 1.8 30 123-152 3-33 (54)
23 PF08671 SinI: Anti-repressor 28.3 82 0.0018 23.6 3.2 24 121-144 5-28 (30)
24 PRK05826 pyruvate kinase; Prov 26.4 1.7E+02 0.0036 34.3 7.1 58 622-694 180-237 (465)
25 PF09577 Spore_YpjB: Sporulati 26.4 8.3E+02 0.018 26.2 12.8 176 75-259 14-200 (232)
26 cd05491 Bromo_TBP7_like Bromod 24.1 1.1E+02 0.0024 29.6 4.3 37 476-531 65-101 (119)
27 PLN02623 pyruvate kinase 23.3 2.2E+02 0.0048 34.4 7.4 54 624-693 287-340 (581)
28 PLN02428 lipoic acid synthase 22.2 4.8E+02 0.01 29.6 9.4 47 613-659 229-277 (349)
29 cd04369 Bromodomain Bromodomai 21.9 2.7E+02 0.0058 23.7 6.0 24 508-531 56-80 (99)
30 cd00288 Pyruvate_Kinase Pyruva 21.5 2.5E+02 0.0053 33.1 7.2 66 610-694 172-237 (480)
31 PTZ00413 lipoate synthase; Pro 21.0 1.6E+02 0.0034 34.0 5.3 47 613-659 276-325 (398)
No 1
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=2.8e-143 Score=1214.91 Aligned_cols=563 Identities=40% Similarity=0.650 Sum_probs=516.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhChhHHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004606 13 SFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAF 92 (743)
Q Consensus 13 ~~~~L~~dv~lLg~lLg~vl~~~~G~~~~e~vE~iR~la~~~~~~r~~~~~~a~~~l~~~L~~~l~~L~~~~a~~laRAF 92 (743)
..+.|+.||++||.+||++|+++.|+++|++||+||+++++. |.. +..+ +..|.+.+.+|+.+++..|+|||
T Consensus 5 ~~~~lr~~v~~Lg~lLge~i~e~~g~~~~e~ve~ir~~s~~~---r~~-~~~~----~~~L~~~l~~Ls~~~~~~vaRaF 76 (910)
T COG2352 5 KYSALRSDVSMLGRLLGETIREAEGEAILELVETIRKLSKES---RAG-DQAD----RQELEATLANLSNDEAIPVARAF 76 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh---hcc-chhh----HHHHHHHHcCCCHhhhhHHHHHH
Confidence 567899999999999999999999999999999999999765 432 2222 46788999999999999999999
Q ss_pred HHHHhHHHHHHhHHHHHHhhhcc---CCCccHHHHHHHHHhCCCCHHHHHHHHhccceeEeeecCCCCccchhHHHHHHH
Q 004606 93 SHYLNLMGIAETHHRVRKSRNVA---HLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLR 169 (743)
Q Consensus 93 s~yf~L~NiAEe~hr~R~~r~~~---~~~~sl~~~~~~L~~~Gis~~~i~~~L~~~~v~pVlTAHPTEa~RrTvl~~~~r 169 (743)
|+|++|+||||+.|+.|+++... ...+||..+|++|++.|+|++++.++|.++.|+|||||||||++||||++|+++
T Consensus 77 s~f~~L~NiaEd~~~~~r~~~~~~~~~~~~sL~~~~~~Lk~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~RrTv~~~~~~ 156 (910)
T COG2352 77 SQFLLLANIAEDYHRIRRRQIHEAAGDSDGSLAATLKKLKEQGLSPETVARALENLNVELVLTAHPTEVQRRTVIDKQRE 156 (910)
T ss_pred HHHhhhhhHHHHhhhHhhhhhhhccCCCcchHHHHHHHHHhcCCCHHHHHHHHHhCceeEEEecCchHHHHHHHHHHHHH
Confidence 99999999999999999775332 235999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhccCcccCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 004606 170 LSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTG 249 (743)
Q Consensus 170 I~~lL~~~d~~~l~~~e~~~~~~~L~~~I~~LWqTdelR~~KPTv~DE~~~gL~y~e~sl~~avP~l~~~l~~al~~~~g 249 (743)
|..+|.++++.+++.. ++.++++|+++|..+||||+||..||||.|||+||++||++|||++||++++++..++++++|
T Consensus 157 I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~~~~~~~~~ 235 (910)
T COG2352 157 INRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELNEALQETFG 235 (910)
T ss_pred HHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998888776 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----cccHHHHHHHHHHHhh
Q 004606 250 KPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMN----RCSDRMSRLAHDILER 325 (743)
Q Consensus 250 ~~~p~~~~~irfGSWiGGDRDGNP~VTaevT~~~~~~~R~~al~~Y~~~l~~L~~~LS~s----~~s~~l~~~~~~~~~~ 325 (743)
...|+.++|++|||||||||||||||||+||+++++++||+|+++|+++|.+|..+||+| .|++++.+++..
T Consensus 236 ~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~ala~~---- 311 (910)
T COG2352 236 ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELLALAGE---- 311 (910)
T ss_pred cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHHHHHhc----
Confidence 777878899999999999999999999999999999999999999999999999999995 566666654430
Q ss_pred hccCCCccchhhhhhhhhhhcccCCCCCCCCCCCCccCCCCCCcccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCCc
Q 004606 326 ETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQN 405 (743)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (743)
. +
T Consensus 312 ------------------------------------------~---------------------------------~--- 313 (910)
T COG2352 312 ------------------------------------------S---------------------------------Q--- 313 (910)
T ss_pred ------------------------------------------C---------------------------------c---
Confidence 0 0
Q ss_pred cCCCCCCCCCCCCCCCCcccccccccCCCCCCchhHHHhhhhhhhhccccccccccCCCCCCCCCCCchHHhHHHHHHHH
Q 004606 406 ACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKL 485 (743)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~EPYR~~L~~i~~RL 485 (743)
....++.+||||++|.+|+.||
T Consensus 314 ----------------------------------------------------------d~~~~r~~EPYR~al~~i~~rL 335 (910)
T COG2352 314 ----------------------------------------------------------DQSIRRADEPYRRALKYIRSRL 335 (910)
T ss_pred ----------------------------------------------------------cccchhccccHHHHHHHHHHHH
Confidence 0112456799999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCCCCHHHhHHHHHHHHHHHhhcCCcccccchHHHHHHHHHHcCccccccccccchhHH
Q 004606 486 MKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRH 565 (743)
Q Consensus 486 ~~T~~~~~~~~~~~~~~~~~~~~Y~s~~ell~dL~~i~~SL~~~g~~~lA~g~L~~Lir~v~~FGfhLa~LDIRQ~S~~H 565 (743)
++|.+++.+.+.+.. ...+.++|.+++||++||..|++||.+||++.+|+|+|.+++++|++|||||++|||||||++|
T Consensus 336 ~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~SL~~~G~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h 414 (910)
T COG2352 336 MATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQSLHACGMEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRH 414 (910)
T ss_pred HHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHHHHHhcCCceeccchHHHHHHHHHhcCceeeccccccccchH
Confidence 999998876655443 2344668999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHH----hccccccceeecCC
Q 004606 566 AEALDAITRYLDMG-TYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAE----LGSDSLGAYVISMA 640 (743)
Q Consensus 566 ~~al~el~~~lg~~-~Y~~ldE~~r~~~L~~eL~~~RpL~~~~~~~s~e~~evL~tfr~iae----~g~~aig~YIISmt 640 (743)
++||+||++++|++ +|.+|+|++|++||.+||.++|||+|+..++|++++++|+||+++++ +|+++|++||||||
T Consensus 415 ~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL~p~~~~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma 494 (910)
T COG2352 415 EEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPLLPPFWQPSEETREELATFRVAAEAKDEFGEDAIGAYIISMA 494 (910)
T ss_pred HHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 99999999999998 99999999999999999999999999999999999999999999996 69999999999999
Q ss_pred CChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHHHHHHhchHHHHHHHHhhCCCeeEEEEecc
Q 004606 641 SNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCR 720 (743)
Q Consensus 641 ~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~~Lls~p~Yr~~l~~~~g~~QEVMLGYS 720 (743)
+++||||||++|+||+||.+. +..+++|||||||||||+||+.||++||++||||+.|.. ++|.||||||||
T Consensus 495 ~s~SDvLev~lLlKE~Gl~~~-------~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~-~~n~QEVMlGYS 566 (910)
T COG2352 495 ESVSDVLEVLLLLKEAGLVDP-------ERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAG-RGNVQEVMLGYS 566 (910)
T ss_pred CCHHHHHHHHHHHHHhCCCCc-------cCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcC-CCCceEEEeccc
Confidence 999999999999999999743 347899999999999999999999999999999999965 789999999999
Q ss_pred ccc------chHHHHHhcc
Q 004606 721 EFL------DSVICRFHGY 733 (743)
Q Consensus 721 Ds~------~~~~~~~~~~ 733 (743)
||- +|+|++|++-
T Consensus 567 DSnKDgG~laa~Wa~y~Aq 585 (910)
T COG2352 567 DSNKDGGYLAANWALYKAQ 585 (910)
T ss_pred ccccccchhhhHHHHHHHH
Confidence 973 8999998863
No 2
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=6.4e-142 Score=1254.60 Aligned_cols=584 Identities=35% Similarity=0.559 Sum_probs=518.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhChhHHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004606 13 SFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAF 92 (743)
Q Consensus 13 ~~~~L~~dv~lLg~lLg~vl~~~~G~~~~e~vE~iR~la~~~~~~r~~~~~~a~~~l~~~L~~~l~~L~~~~a~~laRAF 92 (743)
..++|+.||++||++||+||+++.|+++|++||+||.+++.. +..++..+ .++|.+.+.+|+++++..|+|||
T Consensus 46 ~~~~L~~dv~~Lg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~---~~~~~~~~----~~~l~~~l~~l~~~~~~~v~raF 118 (974)
T PTZ00398 46 FQEPLDLDIKALEFLLFDLVKDHWPEDGFEIIFDILKLSMKF---SENEDSES----FNTLWKKIYNLDSGYLGLVVRLF 118 (974)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---hhccchhh----HHHHHHHHhcCCHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999765 43332222 45788999999999999999999
Q ss_pred HHHHhHHHHHHhHHHHHHhhhcc--------CCCccHHHHHHHHHhCCCCHHHHHHHHhccceeEeeecCCCCccchhHH
Q 004606 93 SHYLNLMGIAETHHRVRKSRNVA--------HLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQ 164 (743)
Q Consensus 93 s~yf~L~NiAEe~hr~R~~r~~~--------~~~~sl~~~~~~L~~~Gis~~~i~~~L~~~~v~pVlTAHPTEa~RrTvl 164 (743)
|+||+|+|||||+|++|++|... +..+||+.++.+|++.|+++++|+++|+++.|+|||||||||++|||||
T Consensus 119 s~~~~L~NiAE~~~~~r~~r~~~~~~~~~~~~~~~sl~~~l~~L~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrTvL 198 (974)
T PTZ00398 119 NHMCVLSNYAEWAHRIRRRRAFERSFTDNDRIFTESLKNTIEMLLQAGFDKEEIYKQLCNQEIDLVLTAHPTQAQRISVL 198 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCccCcHHHHHHHHHHcCCCHHHHHHHHhcCceeeeeccCCccccHHHHH
Confidence 99999999999999999877543 3479999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhccCcccCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004606 165 YKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNAL 244 (743)
Q Consensus 165 ~~~~rI~~lL~~~d~~~l~~~e~~~~~~~L~~~I~~LWqTdelR~~KPTv~DE~~~gL~y~e~sl~~avP~l~~~l~~al 244 (743)
+||++|+++|.++|+.++++.|+++++++|+++|++||||+|||+.||||.|||+|||+||++|||++||.+|++|+++|
T Consensus 199 ~~~~~I~~~L~~ld~~~~t~~e~~~~~~~L~~~I~~LW~TdeiR~~KPtv~DE~~~gl~y~~~sl~~aiP~~~~~l~~al 278 (974)
T PTZ00398 199 KNCQRLGELLLSLDNTDLTPFEIKDLKKNLQRLLAMLWKTDTIRRAKPTPLDEAQNLINTIENTIFDALPNFIRYIDNVL 278 (974)
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHhCcchhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHh
Q 004606 245 KKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILE 324 (743)
Q Consensus 245 ~~~~g~~~p~~~~~irfGSWiGGDRDGNP~VTaevT~~~~~~~R~~al~~Y~~~l~~L~~~LS~s~~s~~l~~~~~~~~~ 324 (743)
.++++.++|..++||+|||||||||||||||||+||++|+.++|++|+++|+++|++|.++||+|.|++++..+......
T Consensus 279 ~~~~~~~~~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~L~~~~~~~~~ 358 (974)
T PTZ00398 279 YEYNLDPLPPTKKLFTFSSWVGGDRDGNPFVTAEVTRQVVYFNRIRACELFIHMIEKLMYDLPLKSCTEKLKEYVDNLPD 358 (974)
T ss_pred HHhcCCCCCCCCCceeccCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhhhh
Confidence 99987666766789999999999999999999999999999999999999999999999999999999998876543211
Q ss_pred hhccCCCccchhhhhhhhhhhcccCCCCCCCCCCCCccCCCCCCcccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCC
Q 004606 325 RETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQ 404 (743)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (743)
. . .+ . .. ..+...++
T Consensus 359 ~-~---------------------------~~----~------~~---------------~~~~~~~~------------ 373 (974)
T PTZ00398 359 E-I---------------------------SF----Y------IT---------------DKDATYLL------------ 373 (974)
T ss_pred h-h---------------------------cc----c------cc---------------cchhhhhh------------
Confidence 0 0 00 0 00 00000000
Q ss_pred ccCCCCCCCCCCCCCCCCcccccccccCCCCCCchhHHHhhhhhhhhccccccccccCCCCCCCCCCCchHHhHHHHHHH
Q 004606 405 NACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEK 484 (743)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~EPYR~~L~~i~~R 484 (743)
+ .+. ..+. ++||||++|..|++|
T Consensus 374 ---------------------~-----------------------------~~~-----~~~~--~~EPYR~~l~~i~~r 396 (974)
T PTZ00398 374 ---------------------R-----------------------------EFM-----GFIP--EKELYRRALLHVRAK 396 (974)
T ss_pred ---------------------h-----------------------------hhc-----ccCC--CCCcHHHHHHHHHHH
Confidence 0 000 0111 579999999999999
Q ss_pred HHHHHHHHHhhhhcCCCC--CCCCCCCCCHHHhHHHHHHHHHHHhhcCCcccccchHHHHHHHHHHcCccccccccccch
Q 004606 485 LMKTRRRLELLLEDLPCD--FDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQES 562 (743)
Q Consensus 485 L~~T~~~~~~~~~~~~~~--~~~~~~Y~s~~ell~dL~~i~~SL~~~g~~~lA~g~L~~Lir~v~~FGfhLa~LDIRQ~S 562 (743)
|.+|+.++.....+.+.. ......|.+++||++||.+|++||++||+..+|+|.|.+|||+|++||||||+|||||||
T Consensus 397 L~~t~~~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~~SL~~~g~~~lA~g~L~dlir~v~~FGfhLa~LDIRQ~S 476 (974)
T PTZ00398 397 LIATRDYYKDLISNHSVDPEFRRELAYHSTDEILEPLIECYNSLEDVGNTILARGRLLDVIRQVKTFGLHLMKLDIRQES 476 (974)
T ss_pred HHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHHHHHHHHCCChhhHhhHHHHHHHHHHHhCccccccccccCc
Confidence 999999886543322110 122346999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHhccccccceeecCCCC
Q 004606 563 GRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASN 642 (743)
Q Consensus 563 ~~H~~al~el~~~lg~~~Y~~ldE~~r~~~L~~eL~~~RpL~~~~~~~s~e~~evL~tfr~iae~g~~aig~YIISmt~~ 642 (743)
++|++||+||++++|+++|.+|||++|++||++||.++||++++...+|+++++||+||++|+++|+++||+||||||++
T Consensus 477 ~~H~~ai~el~~~~g~~~Y~~l~E~er~~~L~~eL~~~rpl~~~~~~~s~~~~evl~~f~~ia~~~~~alg~yIISmt~~ 556 (974)
T PTZ00398 477 SKHEKAMDEICEYLGLGNYSELSEEEKQDFLLDILPSKRPLIPHDLNWPSEVNEVLDTFKVCSELENEALGAYIISMCRN 556 (974)
T ss_pred HHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHHccccccceeeeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHHHHHHhchHHHHHHHHhhCCCeeEEEEecccc
Q 004606 643 ASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREF 722 (743)
Q Consensus 643 aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~~Lls~p~Yr~~l~~~~g~~QEVMLGYSDs 722 (743)
+||||+|++|+|++|+.. . .++|+||||||||+||++|+.||++||++||||+|++.++++.||||||||||
T Consensus 557 ~sdiL~V~~l~k~~g~~~-----~---~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYSDS 628 (974)
T PTZ00398 557 PSDILLVHVFQKEILKSG-----A---SKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYSDS 628 (974)
T ss_pred HHHHHHHHHHHHHhCCcC-----C---CCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecccc
Confidence 999999999999999631 1 25899999999999999999999999999999999974468899999999999
Q ss_pred c------chHHHHHhcc
Q 004606 723 L------DSVICRFHGY 733 (743)
Q Consensus 723 ~------~~~~~~~~~~ 733 (743)
+ +|+|.+|++.
T Consensus 629 ~Kd~G~laa~w~l~~Aq 645 (974)
T PTZ00398 629 GKDGGRLTSAWELYKAQ 645 (974)
T ss_pred cccccHHHHHHHHHHHH
Confidence 6 8999999864
No 3
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.7e-139 Score=1227.74 Aligned_cols=566 Identities=42% Similarity=0.675 Sum_probs=510.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhChhHHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004606 13 SFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAF 92 (743)
Q Consensus 13 ~~~~L~~dv~lLg~lLg~vl~~~~G~~~~e~vE~iR~la~~~~~~r~~~~~~a~~~l~~~L~~~l~~L~~~~a~~laRAF 92 (743)
.+.+|++||++||++||+||++++|+++|++||+||.+++.. +.. ++.. .++|.+.+.+|+++++..|+|||
T Consensus 5 ~~~~Lr~dv~~Lg~lLg~vi~~~~g~~~~~~ve~ir~~~~~~---r~~-~~~~----~~~L~~~l~~L~~~e~~~v~raF 76 (911)
T PRK00009 5 KDAPLREDVRLLGRLLGDTIREQEGDEVFDLVETIRKLSKSS---RRG-DDAA----REELLKLLKNLSNDELLPVARAF 76 (911)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh---ccc-cchh----HHHHHHHHhcCCHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999765 322 2222 34688999999999999999999
Q ss_pred HHHHhHHHHHHhHHHHHHhhhcc----CCCccHHHHHHHHHhCCCCHHHHHHHHhccceeEeeecCCCCccchhHHHHHH
Q 004606 93 SHYLNLMGIAETHHRVRKSRNVA----HLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHL 168 (743)
Q Consensus 93 s~yf~L~NiAEe~hr~R~~r~~~----~~~~sl~~~~~~L~~~Gis~~~i~~~L~~~~v~pVlTAHPTEa~RrTvl~~~~ 168 (743)
|+||+|+||||++|++|++|+.. +..+|+..++.+|+++|+++++|+++|+++.|+|||||||||++|||||++|+
T Consensus 77 s~~~~L~NiAEe~~~~r~~r~~~~~~~~~~~sl~~~~~~l~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrtvL~~~~ 156 (911)
T PRK00009 77 SQFLNLANIAEDYHHIRRRREHASGSQPQPGSLAETLRRLKAAGVSPEELARALEELDIEPVLTAHPTEVQRRTLLDKQR 156 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHcCCCHHHHHHHHhhCcceeeeecCCcccchHHHHHHHH
Confidence 99999999999999999887653 35799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhccCcccCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 004606 169 RLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHT 248 (743)
Q Consensus 169 rI~~lL~~~d~~~l~~~e~~~~~~~L~~~I~~LWqTdelR~~KPTv~DE~~~gL~y~e~sl~~avP~l~~~l~~al~~~~ 248 (743)
+|+.+|.++|+.++++.|+++++++|+++|++||||+++|+.||||.|||+|||+||+++||++||.+|++++++|.+++
T Consensus 157 ~I~~~L~~~d~~~~t~~e~~~~~~~l~~~i~~LW~T~eiR~~KPtv~DE~~~gl~y~~~~l~~aiP~~~~~l~~al~~~~ 236 (911)
T PRK00009 157 EIAALLRQLDDVDLTPRERAKIERRLRRLIAQLWQTDEIRQFRPTVVDEIKNGLAYYENSLWQAVPKLYRELEEALEEHF 236 (911)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhCcchhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----cccHHHHHHHHHHHh
Q 004606 249 GKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMN----RCSDRMSRLAHDILE 324 (743)
Q Consensus 249 g~~~p~~~~~irfGSWiGGDRDGNP~VTaevT~~~~~~~R~~al~~Y~~~l~~L~~~LS~s----~~s~~l~~~~~~~~~ 324 (743)
|..+|..++||+|||||||||||||||||+||++|+.++|++|+++|+++|++|.++||+| .||+++..++...
T Consensus 237 ~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~S~~~~~~s~~l~~l~~~~-- 314 (911)
T PRK00009 237 GLQLPLDAAPLRFGSWIGGDRDGNPNVTAEVTREVLLLQRWVALDLYLKELHALGSELSMSTRLVEVSPELRALAGAS-- 314 (911)
T ss_pred CccCCCCCceeeeccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHHHHhhcc--
Confidence 8777766789999999999999999999999999999999999999999999999999995 5666665432200
Q ss_pred hhccCCCccchhhhhhhhhhhcccCCCCCCCCCCCCccCCCCCCcccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCC
Q 004606 325 RETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQ 404 (743)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (743)
T Consensus 315 -------------------------------------------------------------------------------- 314 (911)
T PRK00009 315 -------------------------------------------------------------------------------- 314 (911)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCCCCcccccccccCCCCCCchhHHHhhhhhhhhccccccccccCCCCCCCCCCCchHHhHHHHHHH
Q 004606 405 NACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEK 484 (743)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~EPYR~~L~~i~~R 484 (743)
+..+.++.+||||++|..|++|
T Consensus 315 ----------------------------------------------------------~~~~~~~~~EPYR~~l~~i~~r 336 (911)
T PRK00009 315 ----------------------------------------------------------PDQSPHRRDEPYRRALKGIRAR 336 (911)
T ss_pred ----------------------------------------------------------cccccccCCCcHHHHHHHHHHH
Confidence 0012346679999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCCCCCCCCHHHhHHHHHHHHHHHhhcCCcccccchHHHHHHHHHHcCccccccccccchhH
Q 004606 485 LMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGR 564 (743)
Q Consensus 485 L~~T~~~~~~~~~~~~~~~~~~~~Y~s~~ell~dL~~i~~SL~~~g~~~lA~g~L~~Lir~v~~FGfhLa~LDIRQ~S~~ 564 (743)
|.+|+..+...+.+.+.. .+.+.|.+++||++||..|++||.++|+..+|+|.|.+|||+|++|||||++|||||||++
T Consensus 337 L~~t~~~~~~~~~~~~~~-~~~~~Y~~~~ell~dL~~i~~SL~~~~~~~~A~~~L~~lir~v~~FGfhla~LDiRQ~S~~ 415 (911)
T PRK00009 337 LAATADWLEARLAGEEAP-PPADPYASAEELLADLDLIYQSLRACGMGILANGRLLDLLRRVEVFGFHLARLDIRQESSR 415 (911)
T ss_pred HHHHHHHHHhhhccCCCC-cccccCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHhhCcccCCcccccChHH
Confidence 999998775443322111 1234799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHH----HhccccccceeecCC
Q 004606 565 HAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAA----ELGSDSLGAYVISMA 640 (743)
Q Consensus 565 H~~al~el~~~lg~~~Y~~ldE~~r~~~L~~eL~~~RpL~~~~~~~s~e~~evL~tfr~ia----e~g~~aig~YIISmt 640 (743)
|++||+||++++|+++|.+|||++|++||++||.++||++++...+|+++.++++.|.+++ .+|+++|+.||||||
T Consensus 416 H~~ai~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~i~~yIiSmt 495 (911)
T PRK00009 416 HEDAVAELTRYLGLGDYASLSEAEKQAFLLRELNSRRPLIPPNWEYSELTSKELAEFLAARRLIAEFGAEAIGAYIISMA 495 (911)
T ss_pred HHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHhCchhhceEeecCC
Confidence 9999999999999889999999999999999999999999999888877777776666555 579999999999999
Q ss_pred CChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHHHHHHhchHHHHHHHHhhCCCeeEEEEecc
Q 004606 641 SNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCR 720 (743)
Q Consensus 641 ~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~~Lls~p~Yr~~l~~~~g~~QEVMLGYS 720 (743)
+++||||+|++|+|++|+..... + .++|+||||||||+||+||+.||++||++|+||+|+.. +++.||||||||
T Consensus 496 ~~~sdvL~v~~l~k~~gl~~~~~-~----~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~-~~~~qeVMlGyS 569 (911)
T PRK00009 496 ETVSDVLEVLLLLKEAGLLDPAA-A----RAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAG-RGNLQEVMLGYS 569 (911)
T ss_pred CCHHHHHHHHHHHHHcCCCccCC-C----CCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhc-CCCeEEEEeecc
Confidence 99999999999999999974321 1 26899999999999999999999999999999999976 789999999999
Q ss_pred ccc------chHHHHHhcc
Q 004606 721 EFL------DSVICRFHGY 733 (743)
Q Consensus 721 Ds~------~~~~~~~~~~ 733 (743)
||+ +|+|.+|++-
T Consensus 570 DS~Kd~G~las~w~l~~Aq 588 (911)
T PRK00009 570 DSNKDGGFLASNWALYRAQ 588 (911)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 986 8999998763
No 4
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=100.00 E-value=5.9e-118 Score=1037.48 Aligned_cols=454 Identities=44% Similarity=0.655 Sum_probs=351.3
Q ss_pred ccceeEeeecCCCCccchhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhccCcccCCCCChHHHHHHHHH
Q 004606 144 KQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLN 223 (743)
Q Consensus 144 ~~~v~pVlTAHPTEa~RrTvl~~~~rI~~lL~~~d~~~l~~~e~~~~~~~L~~~I~~LWqTdelR~~KPTv~DE~~~gL~ 223 (743)
++.|+|||||||||++|||||++|++|+.+|.++|+.++++.|+.+++++|+++|+.||||+|+|+.||||.||++|||+
T Consensus 1 ~l~i~pVlTAHPTEa~RrtvL~~~~~I~~lL~~~d~~~lt~~e~~~~~~~L~~~I~~LWqT~eiR~~KPtv~DE~~~~L~ 80 (794)
T PF00311_consen 1 ELEIEPVLTAHPTEAKRRTVLDKHRRIAELLDQLDNPDLTPRERAELEERLRREITALWQTDEIRREKPTVLDEARNGLY 80 (794)
T ss_dssp --EEEEEEE--TT--SSCHHHHHHHHHHHHHHHCT-TT--HHHHHHHHHHHHHHHHHHHCS--C-SS---HHHHHHHHHH
T ss_pred CceEEEEeccCCCcCcHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCccccccCCChHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004606 224 IVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLR 303 (743)
Q Consensus 224 y~e~sl~~avP~l~~~l~~al~~~~g~~~p~~~~~irfGSWiGGDRDGNP~VTaevT~~~~~~~R~~al~~Y~~~l~~L~ 303 (743)
||+++||++||.+|+++++++.++|+.+.+..+++|+|||||||||||||||||+||++|+.++|++|+++|+++|++|.
T Consensus 81 y~~~~l~~aiP~l~~~l~~al~~~~~~~~~~~~~~i~fGSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~y~~~l~~L~ 160 (794)
T PF00311_consen 81 YFENSLFDAIPQLYRRLERALREHYPDPRLPVPPFIRFGSWIGGDRDGNPFVTAEVTREALRLQREAALRLYLRELDELR 160 (794)
T ss_dssp HHCCTCCCCHHHHHHHHHHHHHCCTS-S---T--SEEEEE-TTTB-TT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCeeEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998654555889999999999999999999999999999999999999999999999
Q ss_pred hhhccccccHHHHHHHHHHHhhhccCCCccchhhhhhhhhhhcccCCCCCCCCCCCCccCCCCCCcccCCCCCCCCCcCC
Q 004606 304 FELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLEL 383 (743)
Q Consensus 304 ~~LS~s~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (743)
++||+|. .+....+++.+. .++. . ..++..
T Consensus 161 ~~LS~S~---~~~~~s~~L~~~---l~~~-----------------------~------~~~~~~--------------- 190 (794)
T PF00311_consen 161 RELSLSD---RRVPVSDELRAR---LEDD-----------------------R------EALPEV--------------- 190 (794)
T ss_dssp HH----------S---HHHHHC---CHCC-----------------------C------H---TT---------------
T ss_pred HHHHHhh---cccccHHHHHHH---Hhhc-----------------------c------cccccc---------------
Confidence 9999963 344444444441 0000 0 000000
Q ss_pred CCcCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCcccccccccCCCCCCchhHHHhhhhhhhhccccccccccCC
Q 004606 384 PVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEP 463 (743)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (743)
..
T Consensus 191 ------------------------------------------------------------------------------~~ 192 (794)
T PF00311_consen 191 ------------------------------------------------------------------------------AE 192 (794)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred ------------------------------------------------------------------------------cc
Confidence 01
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCHHHhHHHHHHHHHHHhhcCCcccccchHHHHH
Q 004606 464 SLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLI 543 (743)
Q Consensus 464 ~~~~r~~~EPYR~~L~~i~~RL~~T~~~~~~~~~~~~~~~~~~~~Y~s~~ell~dL~~i~~SL~~~g~~~lA~g~L~~Li 543 (743)
....++++||||+++..|++||.+|+.+........ ...+...|.+++||++||..|++||.++|+..+|++.|.+||
T Consensus 193 ~~~~~~~~EPYR~~l~~i~~RL~at~~~~~~~~~~~--~~~~~~~Y~~~~Ell~dL~~i~~SL~~~g~~~lA~~~L~~li 270 (794)
T PF00311_consen 193 EFSRRNPDEPYRRKLRLIRARLEATLRRLEAGLSGR--ADPAAEAYRSAEELLADLRLIRDSLIANGAERLADGRLRDLI 270 (794)
T ss_dssp SSS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHTS--SS-STTS--SHHHHHHHHHHHHHHHHHTT-HCCCTTHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHhhccccc--CCCcccCCCCHHHHHHHHHHHHHHHHHCCCchHHHhhHHHHH
Confidence 134567889999999999999999999877655443 112345899999999999999999999999999999999999
Q ss_pred HHHHHcCccccccccccchhHHHHHHHHHHHhcCC-CCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHH
Q 004606 544 RRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDM-GTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFR 622 (743)
Q Consensus 544 r~v~~FGfhLa~LDIRQ~S~~H~~al~el~~~lg~-~~Y~~ldE~~r~~~L~~eL~~~RpL~~~~~~~s~e~~evL~tfr 622 (743)
++|++|||||++|||||||++|++||++|++++|+ .+|.+|+|++|++||++||+++||+.++..+++++++++|++|+
T Consensus 271 r~V~~FGfhLa~LDIRQnS~~H~~av~el~~~~g~~~~Y~~l~e~~r~~~L~~eL~~~rpl~~~~~~~~~~~~~~l~~f~ 350 (794)
T PF00311_consen 271 RQVETFGFHLASLDIRQNSTVHEEAVAELLRHAGIPDDYAELSEEERIALLTRELKSPRPLIPPFAPLSEETREVLDTFR 350 (794)
T ss_dssp HHHHHCTTTSSEEEEEEECHHHHHHHHHHHHCCTS---CCCS-HHHHHHHHHHHHH-SS--S-TT----HHHHHHHHHHH
T ss_pred HHHhccCcceecccccccHHHHHHHHHHHHHhcCCCCCcccCCHHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 68999999999999999999999999999999999999999999
Q ss_pred HHHHh----ccccccceeecCCCChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHHHHHHhch
Q 004606 623 VAAEL----GSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSI 698 (743)
Q Consensus 623 ~iae~----g~~aig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~~Lls~ 698 (743)
+++++ |+++|++||||||+++||||+|++|+|++|++..++++ ++|+||||||||+||+|||.||++||++
T Consensus 351 ~~~~~~~~~g~~~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~-----~~l~vvPLFETi~DL~~a~~im~~ll~~ 425 (794)
T PF00311_consen 351 VIAEIQKRYGPDAIGRYIISMTESASDVLEVLLLAKEAGLADGGDGG-----CRLDVVPLFETIDDLENAPDIMEELLSN 425 (794)
T ss_dssp HHHHS-----CCCEEEEEECT--SCHHHHHHHHHHHCTT---SS--------S---EEEEE-SHHHHHCHHHHHHHHCCS
T ss_pred HHHHhhhcchhhhHHHheeeCCCChHHHHHHHHHHHHhCCCcccccc-----cccCCCCCCCCHHHHHhHHHHHHHHHcC
Confidence 99975 99999999999999999999999999999997543221 6899999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeeEEEEeccccc------chHHHHHhcc
Q 004606 699 DWYRKHIIKNHNGHQEVCVLCREFL------DSVICRFHGY 733 (743)
Q Consensus 699 p~Yr~~l~~~~g~~QEVMLGYSDs~------~~~~~~~~~~ 733 (743)
|+||+||+. +|++||||||||||+ +|+|.+|++.
T Consensus 426 p~yr~~l~~-~~~~QeVMlGYSDS~KDgG~laa~w~ly~Aq 465 (794)
T PF00311_consen 426 PAYRAHLKA-RGNRQEVMLGYSDSNKDGGYLAANWALYKAQ 465 (794)
T ss_dssp HHHHHHCTT----EEEEEEECCCHHHHC-HHHHHHHHHHHH
T ss_pred HHHHHHHhc-CcceEEEEeccccccccccHHHHHHHHHHHH
Confidence 999999976 899999999999986 8999999863
No 5
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=99.87 E-value=1.7e-22 Score=225.27 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=84.5
Q ss_pred HHHhccccccceeecCCCChhhHHHHHHHHHHhC--ccccCCCCCCCCCCCcccccccCChHHHhhHHHHHHHHhchHHH
Q 004606 624 AAELGSDSLGAYVISMASNASDVLAVELLQKDAR--LAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWY 701 (743)
Q Consensus 624 iae~g~~aig~YIISmt~~aSDVL~V~lL~keaG--L~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~~Lls~p~Y 701 (743)
...+|+++|+.||||||+++||||+|++|+|++| |......+ +...+.|+|||||||++||.||+.||++||++|++
T Consensus 114 ~~~~~~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~-~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~ 192 (494)
T PRK13655 114 ALSFYTQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIG-EFEPKEIEVIPLFEDADALLNADEILEEYLKAKKP 192 (494)
T ss_pred HHhcCchhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccC-CCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhh
Confidence 3346899999999999999999999999999999 86432111 11136899999999999999999999999999633
Q ss_pred HHHHHhhCCCeeEEEEeccccc------chHHHHHhc
Q 004606 702 RKHIIKNHNGHQEVCVLCREFL------DSVICRFHG 732 (743)
Q Consensus 702 r~~l~~~~g~~QEVMLGYSDs~------~~~~~~~~~ 732 (743)
+++.||||||||||. +|+|.+|++
T Consensus 193 -------~~~~qeVmlGySDSakd~G~las~w~l~~A 222 (494)
T PRK13655 193 -------HGKYLRVFLARSDPAMNYGHIASVLSVKYA 222 (494)
T ss_pred -------cCCeeEEEEecccCccchhHHHHHHHHHHH
Confidence 347899999999986 899998875
No 6
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=99.69 E-value=7.1e-17 Score=180.90 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=76.8
Q ss_pred hccc--cccceeecCCCChhhHHHHHHHHHHhCccc----------cCCCCCCCCCCCcccccccCChHHHhhHHHHHHH
Q 004606 627 LGSD--SLGAYVISMASNASDVLAVELLQKDARLAV----------SGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRK 694 (743)
Q Consensus 627 ~g~~--aig~YIISmt~~aSDVL~V~lL~keaGL~~----------~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~~ 694 (743)
+|.. .|-=.|||||+++||||+|++|+|++|+.. ..+.+.+...++|+|||||||++||.||+.||++
T Consensus 116 ~~~~~~pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~ 195 (506)
T TIGR02751 116 YDERIAPIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKE 195 (506)
T ss_pred cCCCCCceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHH
Confidence 3777 777889999999999999999999998610 0011101123689999999999999999999999
Q ss_pred HhchHHHHHHHHhhCCCeeEEEEeccccc------chHHHHHhc
Q 004606 695 LLSIDWYRKHIIKNHNGHQEVCVLCREFL------DSVICRFHG 732 (743)
Q Consensus 695 Lls~p~Yr~~l~~~~g~~QEVMLGYSDs~------~~~~~~~~~ 732 (743)
||+ ++. .+.||||||||||. +++|.++++
T Consensus 196 ~l~------~~~---~~~qrVmLGySDSAkd~G~laA~~al~~A 230 (506)
T TIGR02751 196 YAE------AHE---PEYMRVFLARSDPALNYGMIAAVLSNKYA 230 (506)
T ss_pred HHH------hcC---cCceEEEEecccccchhhHHHHHHHHHHH
Confidence 998 442 34599999999986 888988765
No 7
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=96.46 E-value=0.0038 Score=71.34 Aligned_cols=93 Identities=19% Similarity=0.211 Sum_probs=61.1
Q ss_pred HHHHh-ccccccceeecCCCChhhHHHHHHHHHHhCc---------cccCCCCCCCCCCCcccccccCChHHHhhHHHHH
Q 004606 623 VAAEL-GSDSLGAYVISMASNASDVLAVELLQKDARL---------AVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVI 692 (743)
Q Consensus 623 ~iae~-g~~aig~YIISmt~~aSDVL~V~lL~keaGL---------~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im 692 (743)
.+..+ +...|-=-|.=||+++.++..|+-..+.+-- ... +.+.+.....++|+||||+.+-+-|+++|+
T Consensus 111 ~a~~~~~~~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~-E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il 189 (491)
T PF14010_consen 111 SARLFEDVQPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVK-EWIGEFDPEEIEVIPLFEDVDSLLNADEIL 189 (491)
T ss_dssp HHHHH-SS-S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHH-H-SS---TTSSEEEEEE-SHHHHHTHHHHH
T ss_pred HHHHhccCcchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HhccccCcCcceEeeccccHHHHhcHHHHH
Confidence 33345 7788888899999999999999876643321 111 111122236899999999999999999999
Q ss_pred HHHhchHHHHHHHHhhCCCeeEEEEeccccc
Q 004606 693 RKLLSIDWYRKHIIKNHNGHQEVCVLCREFL 723 (743)
Q Consensus 693 ~~Lls~p~Yr~~l~~~~g~~QEVMLGYSDs~ 723 (743)
+.++ ++... .-..|-|+||=||+.
T Consensus 190 ~~y~------~~~g~-~~~y~RVFLarSDpA 213 (491)
T PF14010_consen 190 EEYL------KDKGR-DPEYQRVFLARSDPA 213 (491)
T ss_dssp HHHH------HHTT----SEEEEEEESHHHH
T ss_pred HHHH------HHhcC-CchheeeeeccCchh
Confidence 9888 33311 235899999999974
No 8
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=88.54 E-value=0.89 Score=51.85 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHH-------hc--cccccceeecCCCChhhHHHHHHHH---------HHhCccccCCCCCCCCCCCc
Q 004606 612 SDVKEVLDTFRVAAE-------LG--SDSLGAYVISMASNASDVLAVELLQ---------KDARLAVSGELGRPCPGGTL 673 (743)
Q Consensus 612 ~e~~evL~tfr~iae-------~g--~~aig~YIISmt~~aSDVL~V~lL~---------keaGL~~~~~~g~~~~~~~l 673 (743)
.+.+-.+.|+.+|+. +. ...|--.|.=||+++.-++.|.-.- ++-|..+..+.|.-. +.-|
T Consensus 96 ~erkll~e~l~~i~~s~d~a~~f~~d~~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~-P~~I 174 (488)
T COG1892 96 AERKLLLETLESIARSYDYARVFYGDVAPIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFI-PKLI 174 (488)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhccccccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhcccc-HHHH
Confidence 344445566666663 32 4466677999999999999998544 333433222233321 1368
Q ss_pred ccccccCChHHHhhHHHHHHHHhchHHHHHHHHhhCCCeeEEEEeccccc
Q 004606 674 RVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFL 723 (743)
Q Consensus 674 ~VVPLFETI~DL~~a~~im~~Lls~p~Yr~~l~~~~g~~QEVMLGYSDs~ 723 (743)
.|+||||+++.|-+|..|... |..-. .-..|-|.||=||+-
T Consensus 175 eviPl~e~~~~ll~a~~i~~~------y~~g~---~~e~~RVFLarSDpA 215 (488)
T COG1892 175 EVIPLFEDRESLLKAALIVGE------YAEGR---DPEYLRVFLARSDPA 215 (488)
T ss_pred hhhHhHhhHHHHHHHHHHHHH------HHhcC---CchhheeeeecCchh
Confidence 999999999999999988774 32222 235788999999963
No 9
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=82.89 E-value=3.2 Score=42.60 Aligned_cols=136 Identities=15% Similarity=0.241 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCccccccccccchh------HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcC--CCCCCCCCCCCC
Q 004606 540 GDLIRRVVTFGMVLMKLDLRQESG------RHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKG--KRPLVPPTIEVP 611 (743)
Q Consensus 540 ~~Lir~v~~FGfhLa~LDIRQ~S~------~H~~al~el~~~lg~~~Y~~ldE~~r~~~L~~eL~~--~RpL~~~~~~~s 611 (743)
-.++..+...||...-+|+ +|+. .-..-+.+++.. + +..+. ..+++..+..-+
T Consensus 11 ~~~~~~a~~~g~D~vilDl-Ed~~~~~~K~~ar~~~~~~~~~-----------------~-~~~~~~~~~~~VRvn~~~~ 71 (221)
T PF03328_consen 11 PKMLEKAAASGADFVILDL-EDGVPPDEKDEAREDLAEALRS-----------------I-RAARAAGSEIIVRVNSLDS 71 (221)
T ss_dssp HHHHHHHHTTCSSEEEEES-STTSSGGGHHHHHHHHHHHHHH-----------------H-HHHTTSSSEEEEE-SSTTC
T ss_pred HHHHHHHHhcCCCEEEEeC-cccCCcccchhhHHHHHHHHHh-----------------h-cccccccccceecCCCCCc
Confidence 3466777788999999998 5555 111111111110 0 01111 233333333223
Q ss_pred hhHHHHHHHHHHHHHhccccccceeecCCCChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHH
Q 004606 612 SDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLV 691 (743)
Q Consensus 612 ~e~~evL~tfr~iae~g~~aig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~i 691 (743)
....+-|. +...|.+ ..+|-|.+++.|+..+.-+.+..-... +. ....+.|+|+.||.+-++|+++|
T Consensus 72 ~~~~~Dl~----~l~~g~~---gI~lP~ves~~~~~~~~~~~~~~~~~~----~~--~~~~~~i~~~IET~~gv~~~~eI 138 (221)
T PF03328_consen 72 PHIERDLE----ALDAGAD---GIVLPKVESAEDARQAVAALRYPPAGR----RG--ANGSTKIIPMIETPEGVENLEEI 138 (221)
T ss_dssp HHHHHHHH----HHHTTSS---EEEETT--SHHHHHHHHHHHSHTTTCT----TT--HHCHSEEEEEE-SHHHHHTHHHH
T ss_pred chhhhhhh----hcccCCC---eeeccccCcHHHHHHHHHHHhhccccc----cc--ccCceEEEEeeccHHHHhCHHhh
Confidence 44444333 4455655 469999999999999999988543211 10 12478999999999999999988
Q ss_pred HHHHhchHHHHHHHHhhCCCeeEEEEecccc
Q 004606 692 IRKLLSIDWYRKHIIKNHNGHQEVCVLCREF 722 (743)
Q Consensus 692 m~~Lls~p~Yr~~l~~~~g~~QEVMLGYSDs 722 (743)
+ +. .+.--||+|..|.
T Consensus 139 ~----a~-----------~~v~~l~~G~~Dl 154 (221)
T PF03328_consen 139 A----AV-----------PGVDGLFFGPADL 154 (221)
T ss_dssp H----TS-----------TTEEEEEE-HHHH
T ss_pred c----cc-----------CCeeEEEeCcHHH
Confidence 7 22 3566688888884
No 10
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=78.17 E-value=4.7 Score=43.06 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=81.5
Q ss_pred HHHHHHcCccccccccccchhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHH
Q 004606 543 IRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFR 622 (743)
Q Consensus 543 ir~v~~FGfhLa~LDIRQ~S~~H~~al~el~~~lg~~~Y~~ldE~~r~~~L~~eL~~~RpL~~~~~~~s~e~~evL~tfr 622 (743)
...+..-||.++-+|. ||+..-.+.+..+++.+. ..+--|++.....-....+.+|
T Consensus 33 ~e~~a~~G~D~v~iD~-EHg~~~~~~~~~~i~a~~-------------------~~g~~~lVRvp~~~~~~i~r~L---- 88 (256)
T PRK10558 33 TEVLGLAGFDWLVLDG-EHAPNDVSTFIPQLMALK-------------------GSASAPVVRVPTNEPVIIKRLL---- 88 (256)
T ss_pred HHHHHhcCCCEEEEcc-ccCCCCHHHHHHHHHHHh-------------------hcCCCcEEECCCCCHHHHHHHh----
Confidence 3345566999999998 888777777777665321 1223344332222122233333
Q ss_pred HHHHhccccccceeecCCCChhhHHHHHHHHHHhCccccCCCC--CC-----------CCCCCcccccccCChHHHhhHH
Q 004606 623 VAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELG--RP-----------CPGGTLRVVPLFETVTDLRGAG 689 (743)
Q Consensus 623 ~iae~g~~aig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~g--~~-----------~~~~~l~VVPLFETI~DL~~a~ 689 (743)
+.|.+.+ |+.|.+++.|+=++.-.+|..-+-..+-++ +. .....+.|+|+.||.+-++|+.
T Consensus 89 ---D~Ga~gi---ivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~ 162 (256)
T PRK10558 89 ---DIGFYNF---LIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVD 162 (256)
T ss_pred ---CCCCCee---eecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHH
Confidence 3355554 889999999988888888864221100000 00 0013567999999999999999
Q ss_pred HHHHHHhchHHHHHHHHhhCCCeeEEEEecccc
Q 004606 690 LVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREF 722 (743)
Q Consensus 690 ~im~~Lls~p~Yr~~l~~~~g~~QEVMLGYSDs 722 (743)
+|+.. .+.--||+|-.|-
T Consensus 163 eI~av---------------~gvd~l~iG~~DL 180 (256)
T PRK10558 163 AIAAT---------------EGVDGIFVGPSDL 180 (256)
T ss_pred HHhCC---------------CCCcEEEECHHHH
Confidence 98741 2344588887773
No 11
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=76.86 E-value=5.5 Score=42.37 Aligned_cols=121 Identities=13% Similarity=0.141 Sum_probs=73.4
Q ss_pred HHHHHHcCccccccccccchhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHH
Q 004606 543 IRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFR 622 (743)
Q Consensus 543 ir~v~~FGfhLa~LDIRQ~S~~H~~al~el~~~lg~~~Y~~ldE~~r~~~L~~eL~~~RpL~~~~~~~s~e~~evL~tfr 622 (743)
...+..-||.++-+|. ||+..-.+.+..+++.+ +..+--|++.....-....+.+|
T Consensus 26 ~e~~a~~G~D~v~iD~-EHg~~~~~~~~~~~~a~-------------------~~~g~~~~VRvp~~~~~~i~r~L---- 81 (249)
T TIGR03239 26 TEVLGLAGFDWLLLDG-EHAPNDVLTFIPQLMAL-------------------KGSASAPVVRPPWNEPVIIKRLL---- 81 (249)
T ss_pred HHHHHhcCCCEEEEec-ccCCCCHHHHHHHHHHH-------------------hhcCCCcEEECCCCCHHHHHHHh----
Confidence 3334566999999998 88877777777766532 12233344333222122233333
Q ss_pred HHHHhccccccceeecCCCChhhHHHHHHHHHHhCccccCCCC--------C-----CCCCCCcccccccCChHHHhhHH
Q 004606 623 VAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELG--------R-----PCPGGTLRVVPLFETVTDLRGAG 689 (743)
Q Consensus 623 ~iae~g~~aig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~g--------~-----~~~~~~l~VVPLFETI~DL~~a~ 689 (743)
+.|.+.| |+.|.+++.|+=++.-.+|..-+-..+-++ . ......+.|+|+.||.+-++|+.
T Consensus 82 ---D~Ga~gI---ivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~ 155 (249)
T TIGR03239 82 ---DIGFYNF---LIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVD 155 (249)
T ss_pred ---cCCCCEE---EecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHH
Confidence 3355544 899999999998888888764221100000 0 00013567999999999999999
Q ss_pred HHHH
Q 004606 690 LVIR 693 (743)
Q Consensus 690 ~im~ 693 (743)
+|+.
T Consensus 156 eI~a 159 (249)
T TIGR03239 156 EIAA 159 (249)
T ss_pred HHhC
Confidence 9985
No 12
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=71.16 E-value=4.7 Score=45.85 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=48.2
Q ss_pred ccceeecCCCChhhHHHHHHHHHHhCccccCC-----CCCCCCCCCcccccccCChHHHhhHHHHHHHHhchHHHHHHH
Q 004606 632 LGAYVISMASNASDVLAVELLQKDARLAVSGE-----LGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHI 705 (743)
Q Consensus 632 ig~YIISmt~~aSDVL~V~lL~keaGL~~~~~-----~g~~~~~~~l~VVPLFETI~DL~~a~~im~~Lls~p~Yr~~l 705 (743)
-|-|.||...-.---=.|..|+||||+...+. .|.......|||.|=|-++++|+.|-+++-.....-...+.+
T Consensus 344 ~GGYFIsld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~la~~ekll 422 (425)
T PF12897_consen 344 KGGYFISLDVLDGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKLAAVEKLL 422 (425)
T ss_dssp SBSS-EEEEESTT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEecCCChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899998766666667889999999854321 122212468999999999999999999988776666655554
No 13
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=58.53 E-value=62 Score=37.26 Aligned_cols=134 Identities=18% Similarity=0.147 Sum_probs=74.5
Q ss_pred HHHHHHHHhcccee--EeeecCC-------CCccchhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhccC
Q 004606 135 PDELYDTVCKQEVE--IVLTAHP-------TQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTD 205 (743)
Q Consensus 135 ~~~i~~~L~~~~v~--pVlTAHP-------TEa~RrTvl~~~~rI~~lL~~~d~~~l~~~e~~~~~~~L~~~I~~LWqTd 205 (743)
....++.+.+..-. .+| -+| ++..+.=+..-++++..-|++.-...++.+...+.++.-.+....+.+--
T Consensus 124 ~~k~~e~la~~~~vP~~~i-d~P~~~~~~~~~~~~~Y~~~ql~~l~~~LEe~tG~kit~e~L~eaI~n~nr~~~~~~e~~ 202 (430)
T TIGR03191 124 HAKWYQHVAKEEKIPDFYL-DVGVGAYKDLTDARLDYVANQLHDGIEFVEKASGRKCDDELFIKAIKNEMRSTARWADIC 202 (430)
T ss_pred hHHHHHHHHHhcCCCeEEE-ECCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666554422 233 666 34445556666677777788777777777766555553333333333668
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHhc--CCC-CCCCCCCcccccccccCCCCCCC
Q 004606 206 ELRRHKPTPVDEARAGLNIVEQSLWKA---VPHYLRRVSNALKKHT--GKP-LPLTCAPIRFGSWMGGDRDGNPN 274 (743)
Q Consensus 206 elR~~KPTv~DE~~~gL~y~e~sl~~a---vP~l~~~l~~al~~~~--g~~-~p~~~~~irfGSWiGGDRDGNP~ 274 (743)
++|..+|.|++-......|.-..+... .-.+++.|-+.|++.. |.. .|. ..+ |+ |++|-- |-|+
T Consensus 203 ~l~~~~P~Pisg~dl~~~~~~~~~~~~~~~~~~~~~~L~~el~~r~~~G~~~~~~-e~~-Ri--l~~g~p-~~~~ 272 (430)
T TIGR03191 203 ALNKAKPAPLDEKTMYSLYVLAILHKSSQWCADFMDELYEEVKDRVARGIAAVPN-ERC-RL--MSDTQP-PWPF 272 (430)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHcCCCcCCC-CCc-eE--EEeCCC-CCch
Confidence 899999999985543333333333333 2445555555555432 322 121 233 75 888866 5444
No 14
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=56.30 E-value=20 Score=35.03 Aligned_cols=40 Identities=33% Similarity=0.632 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004606 231 KAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDS 301 (743)
Q Consensus 231 ~avP~l~~~l~~al~~~~g~~~p~~~~~irfGSWiGGDRDGNP~VTaevT~~~~~~~R~~al~~Y~~~l~~ 301 (743)
-.|=.|.-+|..++.++ ||+.++|||.. .+++.|+++|++
T Consensus 92 GSlDalIGrLraafee~------------------Gg~pe~NPf~~-------------~~vr~yLr~vr~ 131 (132)
T PF04852_consen 92 GSLDALIGRLRAAFEEH------------------GGHPEANPFAA-------------RAVRLYLREVRD 131 (132)
T ss_pred ccHHHHHHHHHHHHHHh------------------CCCCCCCchhh-------------HHHHHHHHHHhc
Confidence 34445666777766665 45566999943 456778888763
No 15
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=55.51 E-value=32 Score=40.07 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=46.2
Q ss_pred HHHHHHhccccccceeecCCCChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHHHHH
Q 004606 621 FRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRK 694 (743)
Q Consensus 621 fr~iae~g~~aig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~~ 694 (743)
+..+.+.|. ....+|+.+++.||-.|.-+..+++. ..+.|+|+.||.+.++|+.+|+..
T Consensus 177 l~~~~~~~~---d~I~lskV~sa~dv~~l~~~l~~~~~------------~~~~Iia~IEt~~av~nl~eI~~~ 235 (473)
T TIGR01064 177 LKFGVEQGV---DMVAASFVRTAEDVLEVREVLGEKGA------------KDVKIIAKIENQEGVDNIDEIAEA 235 (473)
T ss_pred HHHHHHCCC---CEEEECCCCCHHHHHHHHHHHHhcCC------------CCceEEEEECCHHHHHhHHHHHhh
Confidence 344455554 45899999999999999877765431 147799999999999999999965
No 16
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=52.93 E-value=31 Score=37.33 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=41.8
Q ss_pred ccceeecCCCChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHHHH
Q 004606 632 LGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIR 693 (743)
Q Consensus 632 ig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~ 693 (743)
+..+++.|++++.|+-.+.-+.++..-. .|.. ...+.|+|+.||..-+.|+.+|+.
T Consensus 86 ~~givlPKv~s~~~v~~~~~~l~~~~~~----~~~~--~~~~~i~~~IET~~gv~~~~eIa~ 141 (288)
T TIGR01588 86 VDVVRLPKTDTAEDIHELEKLIERIEKE----IGRE--VGSTKLMAAIESALGVVNAVEIAR 141 (288)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHHHHh----cCCC--CCCeeEEEEeCCHHHHHhHHHHHh
Confidence 3459999999999999998666642211 1111 136889999999999999988873
No 17
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=52.89 E-value=12 Score=28.65 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=16.5
Q ss_pred HHHHHHHhchHHHHHHHH
Q 004606 689 GLVIRKLLSIDWYRKHII 706 (743)
Q Consensus 689 ~~im~~Lls~p~Yr~~l~ 706 (743)
++||+.+-.+|.||+|+.
T Consensus 7 gqimk~yaadpeyrkh~~ 24 (38)
T PF02526_consen 7 GQIMKAYAADPEYRKHLN 24 (38)
T ss_pred hHHHHHHhcCHHHHHHHH
Confidence 579999999999999993
No 18
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=50.25 E-value=4.6 Score=33.82 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=35.1
Q ss_pred HHHHHHHcCccccccccccchhHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 004606 542 LIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLE 591 (743)
Q Consensus 542 Lir~v~~FGfhLa~LDIRQ~S~~H~~al~el~~~lg~~~Y~~ldE~~r~~ 591 (743)
||--.++||+.+-.+||---| .+..+++.+.-.+|++|||++-++
T Consensus 15 li~im~sf~~a~~~~~i~i~s-----~~~~l~~~l~k~~ys~ld~ee~me 59 (62)
T PF12133_consen 15 LIIIMRSFRIAIWNIQIIISS-----IVRQLFNPLDKKNYSELDDEEPME 59 (62)
T ss_pred HHHHHHHHHHHHHhHHhHHHH-----HHHHHhcccccccccccCcccccc
Confidence 566689999999999986544 366677777777899999987554
No 19
>PRK08187 pyruvate kinase; Validated
Probab=41.92 E-value=72 Score=37.55 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=51.7
Q ss_pred ccceeecCCCChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHHHHHHhchHHHHHHHHhhCCC
Q 004606 632 LGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNG 711 (743)
Q Consensus 632 ig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~~Lls~p~Yr~~l~~~~g~ 711 (743)
+....+|+.+++.||..+.-+..+.|-. +. ..+.|+|..||...++|.++|+..--+ ..
T Consensus 325 vD~I~lSfV~saeDV~~l~~~L~~~~~~-----~~----~~~~IIaKIET~~gv~Nl~eI~~~ad~------------~~ 383 (493)
T PRK08187 325 ADLVGYSFVQSPGDVEALQAALAARRPD-----DW----RKLGLVLKIETPRAVANLPELIVQAAG------------RQ 383 (493)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHhCCC-----CC----CCCeEEEEECCHHHHHHHHHHHHHhCc------------CC
Confidence 4558899999999999999887654310 01 267899999999999999999863211 12
Q ss_pred eeEEEEeccccc
Q 004606 712 HQEVCVLCREFL 723 (743)
Q Consensus 712 ~QEVMLGYSDs~ 723 (743)
.--||+|=-|-+
T Consensus 384 v~GImiARGDLg 395 (493)
T PRK08187 384 PFGVMIARGDLA 395 (493)
T ss_pred CcEEEEEchHhh
Confidence 335888877754
No 20
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=31.02 E-value=1.5e+02 Score=31.57 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=44.1
Q ss_pred HHHhccccccceeecCCCChhhHHHHHHHHHHhCccccCCC-C--CCC-----------CCCCcccccccCChHHHhhHH
Q 004606 624 AAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGEL-G--RPC-----------PGGTLRVVPLFETVTDLRGAG 689 (743)
Q Consensus 624 iae~g~~aig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~-g--~~~-----------~~~~l~VVPLFETI~DL~~a~ 689 (743)
+-+.|. ..-||-|.+++.|+-++.-.+|+.-.-..+-+ + +.. ....+-|+|+.||.+-++|+.
T Consensus 80 ~Ld~Ga---~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~ 156 (249)
T TIGR02311 80 LLDIGA---QTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLE 156 (249)
T ss_pred HhCCCC---CEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHH
Confidence 334454 45699999999999999988885422100000 0 000 001466999999999999999
Q ss_pred HHHH
Q 004606 690 LVIR 693 (743)
Q Consensus 690 ~im~ 693 (743)
+|+.
T Consensus 157 eI~a 160 (249)
T TIGR02311 157 EIAA 160 (249)
T ss_pred HHHC
Confidence 9985
No 21
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=28.70 E-value=2.9e+02 Score=28.68 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHHHHHHhccccccceeecCCCChhhHHHHHHHHHHh
Q 004606 610 VPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDA 656 (743)
Q Consensus 610 ~s~e~~evL~tfr~iae~g~~aig~YIISmt~~aSDVL~V~lL~kea 656 (743)
-++...+.+..+..+..+|.+.+. |+.|+++.+|++.++.+.+++
T Consensus 130 ~tp~~~~l~~~~~~~~~~gaDivK--ia~~a~~~~D~~~ll~~~~~~ 174 (228)
T TIGR01093 130 KTPSWEEIVERLEKALSYGADIVK--IAVMANSKEDVLTLLEITNKV 174 (228)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEE--EEeccCCHHHHHHHHHHHHHH
Confidence 345566778888888889988655 889999999999999988765
No 22
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=28.66 E-value=39 Score=28.45 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHh-ccceeEeee
Q 004606 123 DIFSKLVQGGISPDELYDTVC-KQEVEIVLT 152 (743)
Q Consensus 123 ~~~~~L~~~Gis~~~i~~~L~-~~~v~pVlT 152 (743)
..+.++.+..+|.+++.+.|. +..|.|+||
T Consensus 3 ~lIErCl~~yMsk~E~v~~L~~~a~I~P~~T 33 (54)
T PF09713_consen 3 NLIERCLQLYMSKEECVRALQKQANIEPVFT 33 (54)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHcCCChHHH
Confidence 467788888999999999996 457999998
No 23
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=28.32 E-value=82 Score=23.57 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhc
Q 004606 121 CDDIFSKLVQGGISPDELYDTVCK 144 (743)
Q Consensus 121 l~~~~~~L~~~Gis~~~i~~~L~~ 144 (743)
+-..+...++.|+|.++|.+.|..
T Consensus 5 W~~Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 5 WVELIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456788889999999999999864
No 24
>PRK05826 pyruvate kinase; Provisional
Probab=26.43 E-value=1.7e+02 Score=34.34 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=45.2
Q ss_pred HHHHHhccccccceeecCCCChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHHHHH
Q 004606 622 RVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRK 694 (743)
Q Consensus 622 r~iae~g~~aig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~~ 694 (743)
.-+.+.|.+ -.++||.+++.|+-++--+..++|- ..+.|++-.||.+.++|..+|+..
T Consensus 180 ~~ald~g~d---~I~~sfV~saedv~~l~~~l~~~~~------------~~~~iiakIEt~eav~nldeI~~~ 237 (465)
T PRK05826 180 KFAAEQGVD---YIAVSFVRSAEDVEEARRLLREAGC------------PHAKIIAKIERAEAVDNIDEIIEA 237 (465)
T ss_pred HHHHHCCCC---EEEECCCCCHHHHHHHHHHHHHcCC------------cCceEEEEEcCHHHHHhHHHHHHH
Confidence 334455554 5679999999999999777665431 147799999999999999999986
No 25
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=26.40 E-value=8.3e+02 Score=26.24 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=106.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHhhhccCCCccHHHHHHHHHhCCCCHHHHHHHHhccceeEeeecC
Q 004606 75 SEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAH 154 (743)
Q Consensus 75 ~~l~~L~~~~a~~laRAFs~yf~L~NiAEe~hr~R~~r~~~~~~~sl~~~~~~L~~~Gis~~~i~~~L~~~~v~pVlTAH 154 (743)
..+..=..++|..+...|+--|--.+.......+-..|. ...++.++.+.|.+..+++++-.....++.+..===.|
T Consensus 14 qlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~ira---lT~t~~~a~~al~~~~~~~~e~~~~at~~RLavDAl~~ 90 (232)
T PF09577_consen 14 QLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRA---LTETIEEAKKALTSVSMSEEEKIRAATQFRLAVDALTH 90 (232)
T ss_pred HHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 444555678899999999999988888655443333332 25688999999999999999988887765443222346
Q ss_pred CCCc----cchhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhccCcccCCCCChHHHHHHHHHHHHHHH-
Q 004606 155 PTQI----NRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSL- 229 (743)
Q Consensus 155 PTEa----~RrTvl~~~~rI~~lL~~~d~~~l~~~e~~~~~~~L~~~I~~LWqTdelR~~KPTv~DE~~~gL~y~e~sl- 229 (743)
|-+. .-++|+.-..++-.-..+.+. ..-....+.+......+-= .-.=..+|.-++-+..-+.|+++--
T Consensus 91 ~~qPLW~~~e~~i~~~~~~mk~a~~~~~~-----~~f~~~~n~f~~~y~~I~P-sl~I~~~~~~v~~v~s~i~yl~~~~~ 164 (232)
T PF09577_consen 91 KHQPLWLQYEKPIMEDFQRMKQAAQKGDK-----EAFRASLNEFLSHYELIRP-SLTIDRPPEQVQRVDSHISYLERLRF 164 (232)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHhcc-hhhccCCHHHHHHHHHHHHHHHHhhh
Confidence 6665 345566666666555554332 1112222233333332211 1112356777888889999998643
Q ss_pred ----HhHHHHHHHHHHHHHHHhcCCC--CCCCCCCc
Q 004606 230 ----WKAVPHYLRRVSNALKKHTGKP--LPLTCAPI 259 (743)
Q Consensus 230 ----~~avP~l~~~l~~al~~~~g~~--~p~~~~~i 259 (743)
++.+-.-+..++..|+..++.. .+..|+++
T Consensus 165 ~~~~~~~~~~~l~~le~~l~~lF~~~k~d~~dpsl~ 200 (232)
T PF09577_consen 165 QQLDQKEVQEALEQLEEDLQKLFDGVKEDEADPSLI 200 (232)
T ss_pred cccChHHHHHHHHHHHHHHHHHhCcccccccccchH
Confidence 3444455667777777777542 23345554
No 26
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=24.13 E-value=1.1e+02 Score=29.63 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCHHHhHHHHHHHHHHHhhcCC
Q 004606 476 IVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGS 531 (743)
Q Consensus 476 ~~L~~i~~RL~~T~~~~~~~~~~~~~~~~~~~~Y~s~~ell~dL~~i~~SL~~~g~ 531 (743)
--|+-|.+||.+ +.|.++++|++|+.+|..--...|+
T Consensus 65 MDL~tIe~RL~n-------------------g~Y~tp~~F~~DiklI~~Nc~~ynd 101 (119)
T cd05491 65 MDLDTIEERLWN-------------------GYYATPKDFLKDIKRIVRDAKTIGD 101 (119)
T ss_pred cCHHHHHHHHhc-------------------CCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 457888888842 3699999999999999977766665
No 27
>PLN02623 pyruvate kinase
Probab=23.32 E-value=2.2e+02 Score=34.36 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=44.0
Q ss_pred HHHhccccccceeecCCCChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHHHH
Q 004606 624 AAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIR 693 (743)
Q Consensus 624 iae~g~~aig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~ 693 (743)
..+.|-+ -+-+|+.++++||.++--+.+++| ..+.|++-.||.+.++|..+|++
T Consensus 287 ~~~~~vD---~ialSFVr~a~DV~~~r~~l~~~~-------------~~~~iiakIEt~eaVeNldeIl~ 340 (581)
T PLN02623 287 GVENKVD---FYAVSFVKDAQVVHELKDYLKSCN-------------ADIHVIVKIESADSIPNLHSIIT 340 (581)
T ss_pred HHHcCCC---EEEECCCCCHHHHHHHHHHHHHcC-------------CcceEEEEECCHHHHHhHHHHHH
Confidence 3345544 467899999999999998887544 24679999999999999999998
No 28
>PLN02428 lipoic acid synthase
Probab=22.20 E-value=4.8e+02 Score=29.59 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHh--ccccccceeecCCCChhhHHHHHHHHHHhCcc
Q 004606 613 DVKEVLDTFRVAAEL--GSDSLGAYVISMASNASDVLAVELLQKDARLA 659 (743)
Q Consensus 613 e~~evL~tfr~iae~--g~~aig~YIISmt~~aSDVL~V~lL~keaGL~ 659 (743)
...+.|++++.+++. |-.....+|+.+.++..|+.+++.++++.|+.
T Consensus 229 sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd 277 (349)
T PLN02428 229 GYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVD 277 (349)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCC
Confidence 356778888888887 66666788999999999999999999999963
No 29
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=21.93 E-value=2.7e+02 Score=23.74 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=18.7
Q ss_pred CCCCHHHhHHHHHHHHH-HHhhcCC
Q 004606 508 YYETLDQLLEPLLLCYE-SLQSCGS 531 (743)
Q Consensus 508 ~Y~s~~ell~dL~~i~~-SL~~~g~ 531 (743)
.|.+.+||.+|+.+|.. ++.-++.
T Consensus 56 ~Y~s~~~f~~D~~li~~Na~~~n~~ 80 (99)
T cd04369 56 EYKSLEEFEADVRLIFSNAKTYNGP 80 (99)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 59999999999999854 5555543
No 30
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=21.50 E-value=2.5e+02 Score=33.14 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=49.1
Q ss_pred CChhHHHHHHHHHHHHHhccccccceeecCCCChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHH
Q 004606 610 VPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAG 689 (743)
Q Consensus 610 ~s~e~~evL~tfr~iae~g~~aig~YIISmt~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~ 689 (743)
+++.-.+-++ ...+.| +--+-+|+.+++.||-++--+.+.+| ..+.|++-.||.+.++|..
T Consensus 172 ltekD~~di~---f~~~~~---vD~ia~SFV~~~~di~~~r~~l~~~~-------------~~~~iiakIEt~~av~nld 232 (480)
T cd00288 172 LSEKDKADLR---FGVEQG---VDMIFASFVRKASDVLEIREVLGEKG-------------KDIKIIAKIENQEGVNNFD 232 (480)
T ss_pred CCHHHHHHHH---HHHHcC---CCEEEECCCCCHHHHHHHHHHHHhcC-------------CCceEEEEECCHHHHHhHH
Confidence 4555554444 333444 44567899999999999998887533 1466999999999999999
Q ss_pred HHHHH
Q 004606 690 LVIRK 694 (743)
Q Consensus 690 ~im~~ 694 (743)
+|+..
T Consensus 233 eI~~~ 237 (480)
T cd00288 233 EILEA 237 (480)
T ss_pred HHHHh
Confidence 99986
No 31
>PTZ00413 lipoate synthase; Provisional
Probab=21.04 E-value=1.6e+02 Score=34.01 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHh---ccccccceeecCCCChhhHHHHHHHHHHhCcc
Q 004606 613 DVKEVLDTFRVAAEL---GSDSLGAYVISMASNASDVLAVELLQKDARLA 659 (743)
Q Consensus 613 e~~evL~tfr~iae~---g~~aig~YIISmt~~aSDVL~V~lL~keaGL~ 659 (743)
.-.+-|++++.++++ |-..+...||.|-++-.|+++++.-+++.|+.
T Consensus 276 tYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVD 325 (398)
T PTZ00413 276 SYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVS 325 (398)
T ss_pred CHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCc
Confidence 456778888888876 66688899999999999999999999999974
Done!