Query 004606
Match_columns 743
No_of_seqs 125 out of 834
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 17:57:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004606.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1905-1909//hhsearch_pdb/004606hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jqo_A Phosphoenolpyruvate car 1.0 1 1 1214.2 65.1 572 13-733 30-621 (970)
2 1jqn_A Pepcase, PEPC, phosphoe 1.0 1 1 1185.1 61.0 550 14-733 5-561 (883)
3 3odm_A Pepcase, PEPC, phosphoe 1.0 1 1 206.2 8.7 101 628-733 136-243 (560)
4 1e0t_A Pyruvate kinase, PK; ph 1.0 1 1 23.0 7.4 12 540-551 261-272 (470)
5 1a3w_A Pyruvate kinase; allost 1.0 1 1 22.6 7.0 15 539-553 280-294 (500)
6 3gr4_A Pyruvate kinase isozyme 1.0 1 1 21.9 6.5 12 256-267 135-146 (550)
7 3hqn_D Pyruvate kinase, PK; TI 1.0 1 1 20.0 6.7 12 256-267 87-98 (499)
8 1sgj_A Citrate lyase, beta sub 1.0 1 1 18.9 5.3 13 681-693 236-248 (284)
9 3t05_A Pyruvate kinase, PK; te 1.0 1 1 18.7 7.6 11 540-550 281-291 (606)
10 3qtg_A Pyruvate kinase, PK; TI 1.0 1 1 18.5 6.7 67 609-693 178-245 (461)
No 1
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
Probab=1.00 E-value=1 Score=1214.25 Aligned_cols=572 Identities=39% Similarity=0.650 Sum_probs=518.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 92549999999999999999641091699999999999897434210486004899999999997079999999999999
Q 004606 13 SFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAF 92 (743)
Q Consensus 13 ~~~~L~~dv~lLg~lLg~vl~~~~G~~~~e~ve~iR~l~~~~~~~r~~~~~~~~~~~~~~L~~~l~~L~~~~a~~laRAF 92 (743)
.+.+|++||++||++||+||+++.|+++|++||++|.+++.. ++.++..+ .++|.+.+.+|+++++..++|||
T Consensus 30 ~~~~Lr~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~ls~~~---~r~~~~~~----~~~l~~~l~~L~~~~~~~v~RAF 102 (970)
T 1jqo_A 30 EDDKLIEYDALLVDRFLNILQDLHGPSLREFVQECYEVSADY---EGKGDTTK----LGELGAKLTGLAPADAILVASSI 102 (970)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHHCCTHH----HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---HHCCCCHH----HHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 548899999999999999999856899999999999998886---53367146----99999988459999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC------------CCCCCHHHHHHHH-HHCCCCHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 99996897998699999843103------------8976199999999-9689997889999712640474406997753
Q 004606 93 SHYLNLMGIAETHHRVRKSRNVA------------HLSKSCDDIFSKL-VQGGISPDELYDTVCKQEVEIVLTAHPTQIN 159 (743)
Q Consensus 93 s~yf~L~NiAEe~~r~R~~r~~~------------~~~~Sl~~~~~~L-~~~G~s~~~i~~~L~~~~v~pVlTAHPTE~~ 159 (743)
|+||||+|||||+|++|++|... ...+||..+|.+| ++.|+++++|++.|+++.|+|||||||||++
T Consensus 103 s~~~~L~NiAEe~~~~r~~r~~~~~~~~~~~~~~~~~~~sl~~~~~~L~~~~g~~~~~i~~~L~~~~v~pVlTAHPTE~~ 182 (970)
T 1jqo_A 103 LHMLNLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSA 182 (970)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHTTSCCCHHHHHHHHHTCEEEEEEECCTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 99999999999999999998875302665333468985439999999998729999999999954902566516986252
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02599999999998731299999958899999999999999706683247899959989999999998788678999999
Q 004606 160 RRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRR 239 (743)
Q Consensus 160 RrTvl~k~~rI~~lL~~ld~~~l~~~e~~~~~~~L~~~I~~LWqTdelR~~KPTv~DEv~~gL~y~e~sl~~aiP~l~r~ 239 (743)
||||++||++|+++|.++++.++++.|++.+.++|+++|++||||||+|+.||||.||++|||+||++|||++||++|++
T Consensus 183 RrTvl~k~~~I~~lL~~l~~~~lt~~e~~~~~~~L~~~I~~lW~TdeiR~~kPtv~DE~~~gl~y~~~sl~~avP~~~r~ 262 (970)
T 1jqo_A 183 RRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRR 262 (970)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHSCCSCCSCCCHHHHHHHHHHHHTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89899999999999999765789878999999999999999848724216698849999999999998799999999999
Q ss_pred HHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 999998711-9999998898301455556898998778798999999999999999999999999651233131788877
Q 004606 240 VSNALKKHT-GKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRL 318 (743)
Q Consensus 240 l~~al~~~~-g~~~p~~~~~i~fGSWiGGDRDGNP~VTaeVT~~~~~~~R~~al~~Y~~~l~~L~~~LS~s~~s~~l~~~ 318 (743)
++++|+++| +..+|+..+||+|||||||||||||||||+||++|+.++|++++++|++++++|+++||+|.||+++...
T Consensus 263 l~~al~~~~~~~~l~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L~~eLS~s~~s~eL~~~ 342 (970)
T 1jqo_A 263 VDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVR 342 (970)
T ss_dssp HHHHHHTTTCCSCCCTTCCSEEEEECTTTBCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 99999870578778888983000587733689999879999999999999999999999999999971789999999999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998521167875201355533321013698899989888766789987656899999887678876778888999999
Q 004606 319 AHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTG 398 (743)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (743)
....... +++ ..
T Consensus 343 ~~~~~~~-----------------------------~~~----------~~----------------------------- 354 (970)
T 1jqo_A 343 AEELHSS-----------------------------SGS----------KV----------------------------- 354 (970)
T ss_dssp HHHHHHH-----------------------------HCC----------CC-----------------------------
T ss_pred HHHHHHH-----------------------------CCC----------CH-----------------------------
T ss_conf 9978864-----------------------------532----------00-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99987766788999998899988764223556687778712578866654310144200012589999998999557869
Q 004606 399 PESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVL 478 (743)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~r~~~EPYR~~l 478 (743)
..-|. +....++++||||+++
T Consensus 355 -----------------------~~~~~------------------------------------~~~~~~~~~EPYR~~L 375 (970)
T 1jqo_A 355 -----------------------TKYYI------------------------------------EFWKQIPPNEPYRVIL 375 (970)
T ss_dssp -----------------------CTTCS------------------------------------SSCSCCCTTSHHHHHH
T ss_pred -----------------------HCCCC------------------------------------CCCCCCCCCCCHHHHH
T ss_conf -----------------------00011------------------------------------1124678999599999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999865406999999988789978847799999999962299534211499999999870764444344
Q 004606 479 GNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDL 558 (743)
Q Consensus 479 ~~i~~RL~~T~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~~SL~~~g~~~lA~g~L~dLir~V~~FGfhLa~LDI 558 (743)
..|++||.+|+.++...+.+......+...|.+++||++||.+|++||++||+..+|+|.|.||||+|++|||||++|||
T Consensus 376 ~~i~~rL~~T~~~~~~~l~~~~~~~~~~~~Y~~~~ell~dL~~i~~SL~~~g~~~iA~g~L~~lir~V~~FGfhLa~LDi 455 (970)
T 1jqo_A 376 GHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDI 455 (970)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCSTTSCCSHHHHHHHHHHHHHHHHHTSCCTTTTTHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEECCCCCH
T ss_conf 99999999999999875236877777556789999999999999999997797345550499999999973910566232
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEC
Q ss_conf 31001799999999984499999999998899999998629999999999999659999999999998451222632414
Q 004606 559 RQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVIS 638 (743)
Q Consensus 559 RQ~S~~H~~al~ei~~~~g~~~Y~~l~E~~k~~~L~~eL~~~Rpl~~~~~~~s~e~~evL~tf~~iae~g~~aig~YIIS 638 (743)
||||++|++|++||++++|+++|.+|||++|++||++||.++||++++..++|++++++|+||++++++|+++|++||||
T Consensus 456 RQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpL~~~~~~~s~~~~evL~~f~~i~~~g~~a~~~yIIS 535 (970)
T 1jqo_A 456 RQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIIS 535 (970)
T ss_dssp ECCHHHHHHHHHHHHHHHTSCCSTTSCHHHHHHHHHHHHHCCSCCCCTTCCCCHHHHHHHHHHHHHHHSCSTTEEEEEET
T ss_pred HHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHCEEEEC
T ss_conf 00545899999999997589885559999999999998667888999888899899999999999998183530757757
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 89994559999999998071124889999999986001466795788317999999841099999997208982399970
Q 004606 639 MASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVL 718 (743)
Q Consensus 639 mt~~aSDVL~V~lL~keagl~~~~~~g~~~~~~~l~VVPLFETi~DL~~A~~il~~Lls~p~Yr~~l~~~~~~~QEVMLG 718 (743)
||+++||||+|++|+||+|+. ++++||||||||+||+||+.||++||++||||+|+ +++||||||
T Consensus 536 mt~s~sDvL~V~~L~ke~Gl~-----------~~l~VVPLFETi~DL~~a~~im~~ll~~p~yr~~l----~~~QeVMLG 600 (970)
T 1jqo_A 536 MATAPSDVLAVELLQRECGVR-----------QPLPVVPLFERLADLQSAPASVERLFSVDWYMDRI----KGKQQVMVG 600 (970)
T ss_dssp TCCSTHHHHHHHHHHHHTCCS-----------SCCCEEEEECSHHHHHTHHHHHHHHHTCHHHHHHH----TSEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCC-----------CCCCEECCCCCHHHHHHHHHHHHHHHHCHHHHHHH----CCEEEEEEE
T ss_conf 999999999999999982998-----------88873389798999984899999998286889860----782799972
Q ss_pred CCCCC------CHHHHHHHCC
Q ss_conf 15661------0489987206
Q 004606 719 CREFL------DSVICRFHGY 733 (743)
Q Consensus 719 YSDs~------~~~~~~~~~~ 733 (743)
||||. +++|.+|++.
T Consensus 601 YSDS~KD~G~laA~w~ly~Aq 621 (970)
T 1jqo_A 601 YSDSGKDAGRLSAAWQLYRAQ 621 (970)
T ss_dssp STTHHHHSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH
T ss_conf 156632103998999999999
No 2
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Probab=1.00 E-value=1 Score=1185.11 Aligned_cols=550 Identities=40% Similarity=0.683 Sum_probs=511.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 25499999999999999996410916999999999998974342104860048999999999970799999999999999
Q 004606 14 FQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFS 93 (743)
Q Consensus 14 ~~~L~~dv~lLg~lLg~vl~~~~G~~~~e~ve~iR~l~~~~~~~r~~~~~~~~~~~~~~L~~~l~~L~~~~a~~laRAFs 93 (743)
+.+|++||++||++||+||+++.|+++|++||++|.+++.. |. ++..+ .++|.+.+.+|+.+++..++||||
T Consensus 5 ~~~l~~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~l~~~~---r~-~~~~~----~~~l~~~l~~l~~~~~~~v~rAFs 76 (883)
T 1jqn_A 5 YSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSS---RA-GNDAN----RQELLTTLQNLSNDELLPVARAFS 76 (883)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH---HT-TCHHH----HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---HC-CCCHH----HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 68999999999999999999856799999999999998875---22-67144----999999985599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99968979986999998431038976199999999968-99978899997126404744069977530259999999999
Q 004606 94 HYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQG-GISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSH 172 (743)
Q Consensus 94 ~yf~L~NiAEe~~r~R~~r~~~~~~~Sl~~~~~~L~~~-G~s~~~i~~~L~~~~v~pVlTAHPTE~~RrTvl~k~~rI~~ 172 (743)
+||||+|||||+|++|++|......+|+..+|.+|++. |++++++++.|+++.|+|||||||||++||||++||++|++
T Consensus 77 ~~~~L~NiAE~~~~~r~~~~~~~~~~sl~~~~~~l~~~~g~~~~~i~~~L~~~~i~pVlTAHPTE~~Rrtvl~~~~~I~~ 156 (883)
T 1jqn_A 77 QFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNA 156 (883)
T ss_dssp HHHHHHHHHHHHHHHCTTTTCTTCTHHHHHHHHHHHTCTTCCHHHHHHHHHTCCEEEEECCCTTCCBSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999861279976099999999973498999999998458355644369740428999999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87312999999588999999999999997066832478999599899999999987886789999999999987119999
Q 004606 173 LLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPL 252 (743)
Q Consensus 173 lL~~ld~~~l~~~e~~~~~~~L~~~I~~LWqTdelR~~KPTv~DEv~~gL~y~e~sl~~aiP~l~r~l~~al~~~~g~~~ 252 (743)
+|.++++.++++.|++.++++|+++|++||||+|+|+.||||.|||+||++||++|||++||++|++++++++++++..+
T Consensus 157 lL~~~~~~~l~~~e~~~~~~~L~~~I~~lW~T~eiR~~kPtv~DE~~~gl~y~~~sl~~avP~~~~~l~~~l~~~~~~~~ 236 (883)
T 1jqn_A 157 CLKQLDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYKL 236 (883)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHHHHHHHCCCBCSSCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99985366798788999999999999998486110156988399999999999998999999999999999998648777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99889830145555689899877879899999999999999999999999965123313178887799998521167875
Q 004606 253 PLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDR 332 (743)
Q Consensus 253 p~~~~~i~fGSWiGGDRDGNP~VTaeVT~~~~~~~R~~al~~Y~~~l~~L~~~LS~s~~s~~l~~~~~~~~~~~~~~~~~ 332 (743)
|...+||+|||||||||||||||||+||++|+.++|++++++|++++++|.++||++.||+++.....
T Consensus 237 ~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~L~~~LS~~~~s~~l~~~~~------------ 304 (883)
T 1jqn_A 237 PVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPELLALVG------------ 304 (883)
T ss_dssp CTTCCCEEEEECTTTBCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHC------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH------------
T ss_conf 77788421279676478999999999999999999999999999999999987367888899999886------------
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20135553332101369889998988876678998765689999988767887677888899999999987766788999
Q 004606 333 HESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSK 412 (743)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (743)
T Consensus 305 -------------------------------------------------------------------------------- 304 (883)
T 1jqn_A 305 -------------------------------------------------------------------------------- 304 (883)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99889998876422355668777871257886665431014420001258999999899955786999999999999999
Q 004606 413 PAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRL 492 (743)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~r~~~EPYR~~l~~i~~RL~~T~~~~ 492 (743)
..+++||||+++..|++||.+|+.++
T Consensus 305 ------------------------------------------------------~~~~~EPyR~~l~~i~~rL~~t~~~~ 330 (883)
T 1jqn_A 305 ------------------------------------------------------EEGAAEPYRYLMKNLRSRLMATQAWL 330 (883)
T ss_dssp ------------------------------------------------------TTSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------------------------------------41579969999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 86540699999998878997884779999999996229953421149999999987076444434431001799999999
Q 004606 493 ELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAI 572 (743)
Q Consensus 493 ~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~~SL~~~g~~~lA~g~L~dLir~V~~FGfhLa~LDIRQ~S~~H~~al~ei 572 (743)
...+.+.+. ..+...|.+++||++||.+|++||++||+..+|+|.|.++||+|++|||||++|||||||++|++|++||
T Consensus 331 ~~~~~~~~~-~~~~~~y~~~~ell~dL~~i~~SL~~~g~~~ia~~~L~~lir~v~~FGfhLa~LDiRQ~S~~H~~al~el 409 (883)
T 1jqn_A 331 EARLKGEEL-PKPEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGEL 409 (883)
T ss_dssp HHHHTTCCC-CCCSSCCCCHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHTTTTSSEEEEEEEHHHHHHHHHHH
T ss_pred HHHHCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 864226778-8844578999999999999999998779844577689999999986382067732222616999999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 98449999999999889999999862999999999999965999999999999845122263241489994559999999
Q 004606 573 TRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELL 652 (743)
Q Consensus 573 ~~~~g~~~Y~~l~E~~k~~~L~~eL~~~Rpl~~~~~~~s~e~~evL~tf~~iae~g~~aig~YIISmt~~aSDVL~V~lL 652 (743)
++++|+++|.+|||++|++||++||.++||++++..++|++++++|+||++++++.+++||+||||||+++||||+|++|
T Consensus 410 ~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~~~L~~f~~i~~~~~~a~~~yIISmt~s~sDvL~V~~L 489 (883)
T 1jqn_A 410 TRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLL 489 (883)
T ss_dssp HHHHTSCCGGGSCHHHHHHHHHHHHHCSSCCSCSSCCCCHHHHHHHHHHHHHHHSCTTSEEEEEEETCCSHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHH
T ss_conf 99748998555999999999999866899999988899979999999999999866623081875799999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEEECCCCC------CHH
Q ss_conf 99807112488999999998600146679578831799999984109999999720898239997015661------048
Q 004606 653 QKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFL------DSV 726 (743)
Q Consensus 653 ~keagl~~~~~~g~~~~~~~l~VVPLFETi~DL~~A~~il~~Lls~p~Yr~~l~~~~~~~QEVMLGYSDs~------~~~ 726 (743)
+||+|+. .+++||||||||+||+|||.||++||++||||+|+ +++||||||||||. +++
T Consensus 490 ~ke~Gl~-----------~~l~VvPLFETi~DL~~a~~im~~ll~~p~yr~~l----~~~qeVMlGYSDS~KD~G~laA~ 554 (883)
T 1jqn_A 490 LKEAGIG-----------FAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAAS 554 (883)
T ss_dssp HHTTTCC-----------SCCCEEEEECSHHHHHHHHHHHHHHHHSHHHHHHT----TTEEEEEECHHHHHHHHCHHHHH
T ss_pred HHHHCCC-----------CCCCEECCCCCHHHHHHHHHHHHHHHHCHHHHHHH----CCEEEEEEEECCCCCCCCHHHHH
T ss_conf 9982899-----------88672289798999983899999998496888751----78589997204662220399899
Q ss_pred HHHHHCC
Q ss_conf 9987206
Q 004606 727 ICRFHGY 733 (743)
Q Consensus 727 ~~~~~~~ 733 (743)
|.+|++.
T Consensus 555 w~ly~Aq 561 (883)
T 1jqn_A 555 WAQYQAQ 561 (883)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 3
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=1.00 E-value=1 Score=206.21 Aligned_cols=101 Identities=11% Similarity=0.169 Sum_probs=85.2
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 5122263241489994559999999998-071124889999999986001466795788317999999841099999997
Q 004606 628 GSDSLGAYVISMASNASDVLAVELLQKD-ARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHII 706 (743)
Q Consensus 628 g~~aig~YIISmt~~aSDVL~V~lL~ke-agl~~~~~~g~~~~~~~l~VVPLFETi~DL~~A~~il~~Lls~p~Yr~~l~ 706 (743)
|.++|+.||||||+++||||+|++|+|+ +|+.... .|.....++|+||||||||+||+||+.||+++|++ |++ +.
T Consensus 136 g~~aI~~yIISMT~sasDlL~V~~L~k~~aGL~~~e-~g~~~~~~~i~VVPLFETieDL~~a~~Il~~ll~~--~r~-l~ 211 (560)
T 3odm_A 136 GTPAISEVVVPMIETGKEISEFQDRVNSVVDMGNKN-YKTKLDLNSVRIIPLVEDVPALANIDRILDEHYEI--EKS-KG 211 (560)
T ss_dssp SSCSCCEEEESSCCSHHHHHHHHHHHHHHHHHHHHH-CSSCCCTTSSEEEEEECCHHHHHTTHHHHHHHHHH--HHH-TT
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHH--HHH-HC
T ss_conf 976527488569999999999999999982622223-68877778777279828799998269999999999--998-60
Q ss_pred HHCCCEEEEEEECCCCC------CHHHHHHHCC
Q ss_conf 20898239997015661------0489987206
Q 004606 707 KNHNGHQEVCVLCREFL------DSVICRFHGY 733 (743)
Q Consensus 707 ~~~~~~QEVMLGYSDs~------~~~~~~~~~~ 733 (743)
. +++.||||||||||- +|+|.++++.
T Consensus 212 ~-~~~~QeVMLGYSDSaKDgG~laS~waly~Aq 243 (560)
T 3odm_A 212 H-ILKDLRIMIARSDTAMSYGLISGVLSVLMAV 243 (560)
T ss_dssp C-CCSEEEEEEESHHHHHHHCHHHHHHHHHHHH
T ss_pred C-CCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 3-6886999985016764002999999999999
No 4
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=1.00 E-value=1 Score=23.00 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=5.1
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999987076
Q 004606 540 GDLIRRVVTFGM 551 (743)
Q Consensus 540 ~dLir~V~~FGf 551 (743)
..+++..+..|-
T Consensus 261 k~ii~~araaGk 272 (470)
T 1e0t_A 261 KMMIEKCIRARK 272 (470)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998099
No 5
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=1.00 E-value=1 Score=22.58 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=8.5
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999998707644
Q 004606 539 LGDLIRRVVTFGMVL 553 (743)
Q Consensus 539 L~dLir~V~~FGfhL 553 (743)
...+++..+..|-..
T Consensus 280 qk~ii~aaraaGkpv 294 (500)
T 1a3w_A 280 QKKLIAKSNLAGKPV 294 (500)
T ss_dssp HHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHCCCCE
T ss_conf 999999998548987
No 6
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=1.00 E-value=1 Score=21.90 Aligned_cols=12 Identities=33% Similarity=0.351 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCC
Q ss_conf 898301455556
Q 004606 256 CAPIRFGSWMGG 267 (743)
Q Consensus 256 ~~~i~fGSWiGG 267 (743)
-|-||.|.--+|
T Consensus 135 GPkIR~G~~~~~ 146 (550)
T 3gr4_A 135 GPEIRTGLIKGS 146 (550)
T ss_dssp CSCCBBCCBTTB
T ss_pred CCEEEEEECCCC
T ss_conf 987888744788
No 7
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=1.00 E-value=1 Score=20.00 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCC
Q ss_conf 898301455556
Q 004606 256 CAPIRFGSWMGG 267 (743)
Q Consensus 256 ~~~i~fGSWiGG 267 (743)
-|-||.|.--+|
T Consensus 87 GPkIR~g~~~~~ 98 (499)
T 3hqn_D 87 GPEIRTGQFVGG 98 (499)
T ss_dssp CCCCBBCCBGGG
T ss_pred CCEEEEECCCCC
T ss_conf 987766416899
No 8
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=1.00 E-value=1 Score=18.87 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9578831799999
Q 004606 681 TVTDLRGAGLVIR 693 (743)
Q Consensus 681 Ti~DL~~A~~il~ 693 (743)
|.++++.|..|++
T Consensus 236 ~~~ei~~A~~il~ 248 (284)
T 1sgj_A 236 TEADRARARALLD 248 (284)
T ss_dssp -------------
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999999
No 9
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=1.00 E-value=1 Score=18.67 Aligned_cols=11 Identities=45% Similarity=0.736 Sum_probs=4.7
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998707
Q 004606 540 GDLIRRVVTFG 550 (743)
Q Consensus 540 ~dLir~V~~FG 550 (743)
..+|+..+..|
T Consensus 281 k~ii~~~~~~g 291 (606)
T 3t05_A 281 KDLIRQCNKLG 291 (606)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
T ss_conf 99999999809
No 10
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=1.00 E-value=1 Score=18.50 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHH-HHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 999659999999-9999984512226324148999455999999999807112488999999998600146679578831
Q 004606 609 EVPSDVKEVLDT-FRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRG 687 (743)
Q Consensus 609 ~~s~e~~evL~t-f~~iae~g~~aig~YIISmt~~aSDVL~V~lL~keagl~~~~~~g~~~~~~~l~VVPLFETi~DL~~ 687 (743)
.+++.-.+-|.. |.+ ...+.-..+|+.++++||.++--+.+++| ..+.|+.-.||.+.++|
T Consensus 178 ~lTekD~~dl~~~~~~-----~~~vD~Ia~SfVr~a~Dv~~~r~~l~~~g-------------~~~~iiaKIE~~eav~n 239 (461)
T 3qtg_A 178 TPAEEDVEALKAISPI-----RDNIDYVAISLAKSCKDVDSVRSLLTELG-------------FQSQVAVKIETKGAVNN 239 (461)
T ss_dssp SSCHHHHHHHHHHGGG-----GGGCCEEEECSCCSHHHHHHHHHHHHHTT-------------CCCEEEEEECSHHHHHT
T ss_pred CCCHHHHHHHHHHHHH-----HCCCCEEEECCCCCHHHHHHHHHHHHHCC-------------CCCEEEEEECCHHHHHH
T ss_conf 7897789998887776-----54998898548899899999999999639-------------98618999779899973
Q ss_pred HHHHHH
Q ss_conf 799999
Q 004606 688 AGLVIR 693 (743)
Q Consensus 688 A~~il~ 693 (743)
...|++
T Consensus 240 ldeIl~ 245 (461)
T 3qtg_A 240 LEELVQ 245 (461)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999997
Done!