Query 004608
Match_columns 742
No_of_seqs 332 out of 801
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:08:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 5E-176 1E-180 1483.1 64.6 672 8-730 2-716 (719)
2 PF07059 DUF1336: Protein of u 100.0 8.2E-74 1.8E-78 587.5 18.3 207 512-719 1-227 (227)
3 cd08914 START_STARD15-like Lip 100.0 2E-37 4.3E-42 318.7 20.6 205 111-339 3-215 (236)
4 cd08873 START_STARD14_15-like 100.0 1.1E-36 2.4E-41 313.8 21.3 197 112-330 3-206 (235)
5 cd08913 START_STARD14-like Lip 100.0 1.6E-36 3.5E-41 314.2 20.3 216 104-345 2-226 (240)
6 cd08904 START_STARD6-like Lipi 100.0 3.1E-33 6.7E-38 283.8 21.7 182 172-358 20-203 (204)
7 cd08868 START_STARD1_3_like Ch 100.0 4.8E-32 1E-36 275.5 23.7 184 171-360 21-207 (208)
8 cd08906 START_STARD3-like Chol 100.0 1.8E-31 4E-36 272.1 21.5 189 166-360 17-208 (209)
9 cd08869 START_RhoGAP C-termina 100.0 4.8E-31 1E-35 266.6 21.8 176 173-360 18-196 (197)
10 cd08874 START_STARD9-like C-te 100.0 1.5E-30 3.3E-35 264.4 21.1 186 163-359 11-204 (205)
11 cd08903 START_STARD5-like Lipi 100.0 2.7E-30 5.8E-35 263.3 22.4 184 172-359 20-206 (208)
12 cd08867 START_STARD4_5_6-like 100.0 3.5E-30 7.5E-35 261.4 21.8 183 172-358 20-205 (206)
13 cd08909 START_STARD13-like C-t 100.0 4.2E-30 9.1E-35 260.5 19.8 167 173-359 35-203 (205)
14 cd08871 START_STARD10-like Lip 100.0 1.2E-29 2.6E-34 260.4 21.8 183 169-360 18-202 (222)
15 cd08902 START_STARD4-like Lipi 100.0 1E-29 2.2E-34 254.6 19.2 180 172-358 21-201 (202)
16 smart00234 START in StAR and p 100.0 4.6E-29 1E-33 251.2 22.8 182 170-359 15-201 (206)
17 cd08905 START_STARD1-like Chol 100.0 2.9E-29 6.3E-34 255.9 19.3 184 171-360 22-208 (209)
18 cd08872 START_STARD11-like Cer 100.0 1E-28 2.2E-33 256.2 20.0 188 165-362 18-228 (235)
19 cd08911 START_STARD7-like Lipi 100.0 2.1E-28 4.6E-33 249.2 21.5 180 172-358 19-204 (207)
20 cd08907 START_STARD8-like C-te 100.0 4.7E-28 1E-32 243.1 17.0 175 173-359 26-203 (205)
21 cd08910 START_STARD2-like Lipi 100.0 1.5E-27 3.2E-32 243.1 18.2 178 172-359 23-205 (207)
22 PF01852 START: START domain; 100.0 8.2E-27 1.8E-31 234.3 21.7 184 171-362 16-204 (206)
23 cd08908 START_STARD12-like C-t 100.0 3.5E-27 7.5E-32 239.3 18.8 165 174-359 36-202 (204)
24 cd08870 START_STARD2_7-like Li 99.9 1.3E-26 2.8E-31 236.1 21.5 177 174-359 22-207 (209)
25 cd00177 START Lipid-binding ST 99.9 7.9E-26 1.7E-30 222.6 22.2 157 174-335 15-171 (193)
26 cd08876 START_1 Uncharacterize 99.9 1.1E-25 2.4E-30 225.2 21.3 181 169-358 12-194 (195)
27 cd08877 START_2 Uncharacterize 99.9 9.4E-25 2E-29 223.1 16.7 188 164-359 12-213 (215)
28 KOG2761 START domain-containin 99.9 1.9E-21 4.2E-26 196.1 17.7 187 170-360 25-218 (219)
29 KOG1739 Serine/threonine prote 99.5 5.4E-15 1.2E-19 161.5 6.2 168 163-334 392-578 (611)
30 cd08875 START_ArGLABRA2_like C 99.4 4E-12 8.7E-17 131.1 16.5 128 197-332 59-200 (229)
31 cd08864 SRPBCC_DUF3074 DUF3074 99.3 1.1E-11 2.3E-16 127.1 14.0 131 223-358 64-206 (208)
32 cd01246 PH_oxysterol_bp Oxyste 98.8 4.4E-08 9.5E-13 85.7 9.8 91 12-115 1-91 (91)
33 cd07813 COQ10p_like Coenzyme Q 98.7 1.2E-07 2.7E-12 89.5 12.0 134 201-359 2-136 (138)
34 smart00233 PH Pleckstrin homol 98.7 2.1E-07 4.6E-12 79.9 10.8 100 11-116 2-101 (102)
35 PF00169 PH: PH domain; Inter 98.6 2.2E-07 4.9E-12 81.4 9.2 100 11-116 2-103 (104)
36 cd08866 SRPBCC_11 Ligand-bindi 98.6 3.3E-06 7.1E-11 79.8 17.0 141 201-359 2-143 (144)
37 cd01251 PH_centaurin_alpha Cen 98.5 3.3E-07 7.1E-12 83.9 9.0 100 12-118 1-102 (103)
38 cd01260 PH_CNK Connector enhan 98.5 9.6E-07 2.1E-11 79.1 9.5 94 11-115 1-96 (96)
39 PF11274 DUF3074: Protein of u 98.4 1.2E-05 2.7E-10 81.1 15.8 139 207-351 13-177 (184)
40 cd01238 PH_Tec Tec pleckstrin 98.3 9.9E-07 2.1E-11 81.2 7.0 95 12-114 2-105 (106)
41 cd01252 PH_cytohesin Cytohesin 98.3 7.1E-06 1.5E-10 77.4 10.8 96 12-118 2-115 (125)
42 cd00900 PH-like Pleckstrin hom 98.3 5.2E-06 1.1E-10 71.2 9.0 97 12-115 1-99 (99)
43 PF15413 PH_11: Pleckstrin hom 98.2 2E-06 4.3E-11 80.0 6.4 95 12-115 1-112 (112)
44 cd01250 PH_centaurin Centaurin 98.2 5.5E-06 1.2E-10 72.8 9.0 93 12-115 1-94 (94)
45 cd07819 SRPBCC_2 Ligand-bindin 98.2 3.4E-05 7.4E-10 71.9 14.6 134 200-357 4-139 (140)
46 cd01247 PH_GPBP Goodpasture an 98.2 7.7E-06 1.7E-10 73.4 9.6 89 12-114 1-90 (91)
47 cd01235 PH_SETbf Set binding f 98.2 7.5E-06 1.6E-10 73.5 9.6 93 12-116 1-101 (101)
48 cd01257 PH_IRS Insulin recepto 98.2 8.5E-06 1.8E-10 74.6 9.9 91 10-114 2-100 (101)
49 cd01233 Unc104 Unc-104 pleckst 98.2 9.2E-06 2E-10 73.8 9.3 95 11-116 3-98 (100)
50 cd01265 PH_PARIS-1 PARIS-1 ple 98.1 1.3E-05 2.8E-10 72.3 9.2 91 12-115 1-93 (95)
51 cd01219 PH_FGD FGD (faciogenit 98.1 2.2E-05 4.7E-10 71.6 10.7 98 11-118 3-101 (101)
52 cd05018 CoxG Carbon monoxide d 98.0 7.7E-05 1.7E-09 69.9 13.1 139 200-357 3-142 (144)
53 cd01266 PH_Gab Gab (Grb2-assoc 98.0 3.7E-05 8.1E-10 70.8 9.0 96 13-115 2-107 (108)
54 cd08861 OtcD1_ARO-CYC_like N-t 97.9 0.00013 2.7E-09 68.9 12.6 137 202-359 3-141 (142)
55 cd01244 PH_RasGAP_CG9209 RAS_G 97.9 3.2E-05 7E-10 70.5 7.8 85 21-115 14-98 (98)
56 cd00821 PH Pleckstrin homology 97.9 3.5E-05 7.5E-10 65.5 7.4 94 12-115 1-96 (96)
57 cd01241 PH_Akt Akt pleckstrin 97.9 8.6E-05 1.9E-09 67.8 9.3 93 11-115 2-101 (102)
58 cd01264 PH_melted Melted pleck 97.8 0.00012 2.5E-09 67.2 9.0 94 12-115 2-100 (101)
59 cd01220 PH_CDEP Chondrocyte-de 97.8 0.00015 3.2E-09 66.2 9.5 95 11-117 3-98 (99)
60 cd01254 PH_PLD Phospholipase D 97.7 0.00014 2.9E-09 68.7 8.6 80 30-115 34-121 (121)
61 PF03364 Polyketide_cyc: Polyk 97.6 0.00097 2.1E-08 62.0 12.9 109 206-335 1-112 (130)
62 cd07817 SRPBCC_8 Ligand-bindin 97.6 0.0028 6.1E-08 59.0 15.0 135 200-359 2-138 (139)
63 PF15409 PH_8: Pleckstrin homo 97.6 0.00017 3.6E-09 64.7 6.3 84 14-115 1-88 (89)
64 cd08860 TcmN_ARO-CYC_like N-te 97.5 0.0035 7.5E-08 61.0 15.7 139 202-360 5-144 (146)
65 cd07821 PYR_PYL_RCAR_like Pyra 97.5 0.0032 6.9E-08 58.3 14.8 137 200-358 3-139 (140)
66 cd01256 PH_dynamin Dynamin ple 97.5 0.0005 1.1E-08 62.3 8.5 94 12-115 3-104 (110)
67 cd01236 PH_outspread Outspread 97.5 0.00052 1.1E-08 63.3 9.0 92 12-113 1-101 (104)
68 cd01263 PH_anillin Anillin Ple 97.4 0.00061 1.3E-08 64.6 8.5 105 10-115 1-122 (122)
69 cd01237 Unc112 Unc-112 pleckst 97.4 0.00077 1.7E-08 62.2 8.4 89 22-116 13-103 (106)
70 cd01253 PH_beta_spectrin Beta- 97.4 0.00087 1.9E-08 60.9 8.5 96 12-115 1-104 (104)
71 PRK10724 hypothetical protein; 97.3 0.0063 1.4E-07 60.1 14.6 116 197-334 14-129 (158)
72 cd01245 PH_RasGAP_CG5898 RAS G 97.2 0.00077 1.7E-08 61.6 6.8 87 14-114 3-97 (98)
73 PF10604 Polyketide_cyc2: Poly 97.1 0.054 1.2E-06 50.0 17.9 134 200-358 4-138 (139)
74 KOG0930 Guanine nucleotide exc 96.9 0.0028 6E-08 67.0 7.4 95 11-118 261-377 (395)
75 cd08865 SRPBCC_10 Ligand-bindi 96.8 0.041 8.8E-07 50.7 13.9 134 202-359 3-139 (140)
76 KOG2200 Tumour suppressor prot 96.7 0.00036 7.9E-09 79.7 -0.6 91 258-361 574-665 (674)
77 cd01230 PH_EFA6 EFA6 Pleckstri 96.4 0.025 5.4E-07 53.3 9.9 99 12-117 2-112 (117)
78 cd07812 SRPBCC START/RHO_alpha 96.3 0.18 3.9E-06 44.9 14.6 114 201-333 2-115 (141)
79 cd07824 SRPBCC_6 Ligand-bindin 96.2 0.2 4.3E-06 47.9 15.2 109 200-330 3-113 (146)
80 PF12814 Mcp5_PH: Meiotic cell 95.9 0.062 1.4E-06 50.9 10.2 101 12-117 11-122 (123)
81 cd07823 SRPBCC_5 Ligand-bindin 95.9 0.16 3.5E-06 48.6 13.0 140 201-358 2-144 (146)
82 cd01239 PH_PKD Protein kinase 95.7 0.038 8.2E-07 51.8 7.5 98 12-115 2-117 (117)
83 cd08862 SRPBCC_Smu440-like Lig 95.5 0.63 1.4E-05 43.1 15.1 40 200-240 3-42 (138)
84 cd07818 SRPBCC_1 Ligand-bindin 95.4 0.39 8.4E-06 45.6 13.7 38 200-238 4-41 (150)
85 cd07822 SRPBCC_4 Ligand-bindin 94.9 1.4 3.1E-05 40.5 15.3 108 200-326 2-109 (141)
86 PF06240 COXG: Carbon monoxide 94.4 1.2 2.6E-05 42.7 14.1 116 202-336 1-116 (140)
87 cd01218 PH_phafin2 Phafin2 Pl 94.4 0.25 5.4E-06 45.7 8.8 89 22-118 11-100 (104)
88 PF15410 PH_9: Pleckstrin homo 92.5 0.6 1.3E-05 43.9 8.2 99 12-117 2-119 (119)
89 cd07825 SRPBCC_7 Ligand-bindin 92.4 7.4 0.00016 36.4 15.7 30 200-230 2-31 (144)
90 cd01224 PH_Collybistin Collybi 91.9 2.2 4.8E-05 39.9 11.0 98 12-114 4-105 (109)
91 COG2867 Oligoketide cyclase/li 91.9 1.1 2.3E-05 43.9 9.2 116 198-334 2-117 (146)
92 cd07814 SRPBCC_CalC_Aha1-like 91.2 7.8 0.00017 35.6 14.2 137 200-359 2-138 (139)
93 cd07816 Bet_v1-like Ligand-bin 89.9 12 0.00027 36.1 14.8 119 200-331 3-122 (148)
94 cd07820 SRPBCC_3 Ligand-bindin 89.8 7.7 0.00017 36.5 13.0 108 202-330 3-113 (137)
95 KOG3845 MLN, STAR and related 89.7 0.076 1.6E-06 56.1 -0.9 156 176-333 27-183 (241)
96 cd01221 PH_ephexin Ephexin Ple 89.2 2.2 4.8E-05 40.9 8.6 100 12-113 5-119 (125)
97 cd01261 PH_SOS Son of Sevenles 89.1 3.4 7.3E-05 38.9 9.7 100 11-118 5-111 (112)
98 cd01223 PH_Vav Vav pleckstrin 88.4 2.1 4.6E-05 40.5 7.8 88 29-117 20-112 (116)
99 COG5637 Predicted integral mem 87.6 11 0.00023 38.4 12.5 134 200-361 72-211 (217)
100 KOG0690 Serine/threonine prote 87.5 0.95 2E-05 49.8 5.5 97 10-117 15-117 (516)
101 cd01243 PH_MRCK MRCK (myotonic 86.1 5.6 0.00012 37.9 9.1 105 10-115 2-118 (122)
102 cd01222 PH_clg Clg (common-sit 85.5 5.1 0.00011 36.7 8.5 81 29-117 16-96 (97)
103 cd01259 PH_Apbb1ip Apbb1ip (Am 81.6 4.8 0.0001 37.9 6.6 102 12-116 2-108 (114)
104 COG3427 Carbon monoxide dehydr 81.2 24 0.00052 34.8 11.6 115 200-335 3-119 (146)
105 PF15408 PH_7: Pleckstrin homo 81.1 1.1 2.4E-05 40.1 2.1 92 13-114 1-95 (104)
106 cd01242 PH_ROK Rok (Rho- assoc 80.4 12 0.00025 35.3 8.7 102 11-116 1-110 (112)
107 KOG2059 Ras GTPase-activating 79.3 2.3 5E-05 50.7 4.7 97 12-118 567-666 (800)
108 cd01249 PH_oligophrenin Oligop 78.7 8.8 0.00019 35.7 7.3 95 12-114 1-103 (104)
109 cd08899 SRPBCC_CalC_Aha1-like_ 74.5 51 0.0011 31.9 12.0 32 197-229 10-41 (157)
110 PTZ00267 NIMA-related protein 73.2 7.1 0.00015 44.9 6.6 97 7-116 374-476 (478)
111 cd01258 PH_syntrophin Syntroph 71.4 9.4 0.0002 35.8 5.6 101 13-114 2-107 (108)
112 PLN02866 phospholipase D 63.5 21 0.00046 45.0 8.1 81 30-118 219-309 (1068)
113 cd01234 PH_CADPS CADPS (Ca2+-d 62.9 13 0.00028 34.7 4.6 99 12-117 4-111 (117)
114 cd01225 PH_Cool_Pix Cool (clon 56.7 83 0.0018 29.7 8.9 79 26-115 25-108 (111)
115 TIGR01599 PYST-A Plasmodium yo 54.2 2.3E+02 0.0049 29.7 12.6 119 198-323 59-208 (208)
116 PLN02647 acyl-CoA thioesterase 49.4 35 0.00075 39.5 6.3 74 39-112 336-430 (437)
117 PF11687 DUF3284: Domain of un 48.2 1.5E+02 0.0033 27.9 9.5 106 200-334 1-108 (120)
118 cd01232 PH_TRIO Trio pleckstri 46.2 1.2E+02 0.0027 28.6 8.4 88 26-117 21-113 (114)
119 KOG1090 Predicted dual-specifi 39.9 21 0.00045 44.5 2.7 94 10-116 1634-1731(1732)
120 KOG4424 Predicted Rho/Rac guan 37.8 72 0.0016 37.9 6.5 92 12-118 274-371 (623)
121 PLN02647 acyl-CoA thioesterase 36.8 1.4E+02 0.003 34.7 8.6 69 47-115 156-240 (437)
122 PF14593 PH_3: PH domain; PDB: 35.8 92 0.002 29.0 5.8 86 10-118 13-101 (104)
123 KOG1117 Rho- and Arf-GTPase ac 33.8 45 0.00098 41.2 4.2 82 25-115 1047-1130(1186)
124 KOG1117 Rho- and Arf-GTPase ac 33.7 1.1E+02 0.0024 38.0 7.3 97 12-115 494-600 (1186)
125 cd08893 SRPBCC_CalC_Aha1-like_ 33.6 38 0.00082 31.0 2.9 30 200-230 2-31 (136)
126 KOG3549 Syntrophins (type gamm 33.5 91 0.002 34.9 6.1 108 5-117 276-387 (505)
127 COG1607 Acyl-CoA hydrolase [Li 33.0 1E+02 0.0022 30.9 5.9 88 20-118 47-148 (157)
128 KOG3640 Actin binding protein 32.0 78 0.0017 39.6 5.8 108 7-117 987-1107(1116)
129 COG3832 Uncharacterized conser 29.3 5.2E+02 0.011 25.0 10.2 32 197-229 7-38 (149)
130 cd01227 PH_Dbs Dbs (DBL's big 28.2 3.2E+02 0.0069 26.6 8.3 90 26-118 26-117 (133)
131 cd08898 SRPBCC_CalC_Aha1-like_ 27.4 55 0.0012 30.4 2.9 31 200-231 3-33 (145)
132 KOG3723 PH domain protein Melt 26.6 31 0.00068 40.7 1.3 87 20-118 746-838 (851)
133 cd08895 SRPBCC_CalC_Aha1-like_ 26.1 5.6E+02 0.012 24.1 17.2 29 200-229 2-30 (146)
134 cd01262 PH_PDK1 3-Phosphoinosi 25.4 2.2E+02 0.0048 25.9 6.2 74 23-115 10-87 (89)
135 KOG1451 Oligophrenin-1 and rel 22.2 1.9E+02 0.0041 34.7 6.3 100 8-115 263-366 (812)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=5e-176 Score=1483.05 Aligned_cols=672 Identities=34% Similarity=0.603 Sum_probs=596.4
Q ss_pred ccceeeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEecCCcceeeCceEEEEEEeC
Q 004608 8 SQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (742)
Q Consensus 8 ~~~~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn 87 (742)
+...|||||||+|+||||++|||+|||||+|++|+||||+|+++ ++|||+||||+||||||+||++|||++||||+|||
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn 80 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 80 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-cccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence 45679999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCCcceeeccCCHHHHHHHHHHHHHHHHcCCCCCCC----C--------------cccCCCC-----------CCCcc
Q 004608 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALKGGPHQGV----G--------------DHIGCPN-----------SPWES 138 (742)
Q Consensus 88 ~~~~~~~~~~~~~~~eea~~w~~a~~~a~~~~~~~~~~----~--------------~~~~~~~-----------~~~~~ 138 (742)
+++|++|++|||+|+|||++||+||++|++|....... . ++.++++ .+..+
T Consensus 81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 160 (719)
T PLN00188 81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDL 160 (719)
T ss_pred CCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCccc
Confidence 99999999999999999999999999999974222110 0 1112222 24577
Q ss_pred eeeccCCCCCCCccccCCCccccc--ccccccccCCCCCCEEEEecCCcEEec------ccCCCCCCceEEEEEEecCcH
Q 004608 139 FRLSGSSRASHTKSIDWTLCSGTH--MEQVTADVIAPSPWTIFGCQNEGKDRG------SRGKWDDHPAIMAVGVVDGTS 210 (742)
Q Consensus 139 ~r~~~~~~~~~~~s~~w~~~~~~~--~~~a~~d~~a~~~WkLv~~kneI~~~~------~~~~~s~~~~~Ka~~vV~asp 210 (742)
+|+.++|+||+.+.++|+...... |+++.+|+++.++|+|+.|+||+++.+ +..+ +..++|||+|+|+++|
T Consensus 161 ~r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~-~~~~~mKavGVV~asp 239 (719)
T PLN00188 161 LRRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPR-SCSRAMKAVGVVEATC 239 (719)
T ss_pred ceeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccc-cCCceeEEEEEecCCH
Confidence 888899999999999999876654 788999999999999999999876543 3223 4469999999999999
Q ss_pred HHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCC
Q 004608 211 EAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKK 290 (742)
Q Consensus 211 e~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~ 290 (742)
++||++||+++..|.+||.++.++++||+||+|++|+|.++++.|+|+.+++||||++|+|++.+||+|+|+++|++||.
T Consensus 240 E~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~ 319 (719)
T PLN00188 240 EEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHEN 319 (719)
T ss_pred HHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCC
Confidence 99999999998789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEeceEEEEEeCC---CCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 004608 291 CPRQKGSVRACLKSGGYVITPMN---HGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRAKQGNYSS 367 (742)
Q Consensus 291 ~Pp~~G~VRaei~~gGwvI~Pl~---~~~~~~Vtyi~qvDpkGWip~~~~~~~~~i~~~mL~~va~LRe~~~~~~~~~~~ 367 (742)
|||++|||||++++|||+|.|+. +.++|+|+|++|+|+|||+|+|.++++++++++||++||||||||+++++.+.
T Consensus 320 cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~~~- 398 (719)
T PLN00188 320 CGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDERGA- 398 (719)
T ss_pred CCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCcccCc-
Confidence 99999999999999999999983 23699999999999999999999999999999999999999999999998776
Q ss_pred CccccccccccccccccCCCcccCCCcCCC--CCCCCcccccccccccccccCCCCcCCcccCCCCCCCCCCCCCCCCCC
Q 004608 368 PEFLSGELTRNMRMHQTDGNMVQMPTEDGN--SKKNTSEEVDQVSSEHASLVGLNDAADEFFDVPEPSDYDDSENGWTSD 445 (742)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~de~~d~~~~~~~~~~~~~~~~~ 445 (742)
.+|++++.+++.+.. .++++. ++...+.+.+...+.+++++++++++|||||+|+++++....+
T Consensus 399 -------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dE~~~~~e~~~~~~~~k----- 464 (719)
T PLN00188 399 -------PPRIPVMVNMASASV--SSKKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTK----- 464 (719)
T ss_pred -------cccceeecccccccc--cccccccccccccccccccccchhhhhhccccccchhccCCCccccccccc-----
Confidence 788888888864322 222221 1112233333344556889999999999999999876311000
Q ss_pred CCCCCCCCCCCCcccccccchhhhhhhHHhhhcccccccCCccCCCCc-cccCcccccCCCCCCCCccccCCCCceEEcC
Q 004608 446 FGPEMNSQDTRHPKISTAAGFVRKLHDLAVQKRGYVDLQGTAKEDNFS-CCYGTTLQKDPTCTLPCSWTSTDPSTFLIRG 524 (742)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~Ws~~~~~~F~VRg 524 (742)
+ + +..+. ..+.++..|| ++|+|+|++++.+++.+||++|++++|+|||
T Consensus 465 ------~-~--------~~~~~----------------~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG 513 (719)
T PLN00188 465 ------N-E--------TKDTA----------------MEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRS 513 (719)
T ss_pred ------c-c--------ccccc----------------cccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcC
Confidence 0 0 00000 2345677788 9999999999999999999999999999999
Q ss_pred cCccccCcccccCCCceeEEEEEeeecCCccccccCCCCChhhhhhhhcCCceEEEEEEEecCCCCceEEEEEeecCCCC
Q 004608 525 KNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPGSTTYSLALYYMMTTPVK 604 (742)
Q Consensus 525 ~~Yl~dk~K~~a~~~l~~lv~vD~f~s~~r~~~ia~~~~~~~~~~~~~~~~p~~~ivN~qvP~~p~~s~V~Yf~~~~~~~ 604 (742)
+|||+||+|+||+++||+|+|||||++++|+||||+||+|++|.+.++ .||+|||||||||+|+||+|+||++++ +.
T Consensus 514 ~~Yl~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k--~~F~fiVNlQvPg~~~ys~V~Yf~~~~-l~ 590 (719)
T PLN00188 514 KNFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK--GLFSFVVNLQVPGSTHYSMVFYFVTKE-LV 590 (719)
T ss_pred CCcccCCccccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc--CCcEEEEEEEccCCCceEEEEEEeccC-CC
Confidence 999999999999999999999999999999999999999999987655 489999999999999999999999865 77
Q ss_pred CchhHHHHhcCCchhhccceecccccccCceeEeeecCCccEEeeeeeEEEEEeCCCEEEEEEEecchHHHHHHHHHhhc
Q 004608 605 DAPLLESFINGDDAYRNSRFKLIPYISEGSWIVKQSVGKKACLIGQALEINYFHGKNYLELGVDIGSSTVARGVVSLVLG 684 (742)
Q Consensus 605 ~~~Ll~rf~~gdd~fRn~RfKlIp~v~~g~wivk~avg~kp~l~gk~~~~~y~~g~~ylEiDvDi~ss~vAr~~~~l~~g 684 (742)
+++||+||++|||+|||+||||||+|++||||||++||+|||||||+++|+||+|+||||||||||||+||++|++||+|
T Consensus 591 ~~sLl~rF~~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g 670 (719)
T PLN00188 591 PGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIG 670 (719)
T ss_pred CchHHHHhccCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEEeecCCcCccccceeceEeecccCcccccccCCCC
Q 004608 685 YLNNLVIEMAFLIQANTEEELPEFLLGTCRLNHLDAAKAVLLKPSS 730 (742)
Q Consensus 685 ~~~~lvvd~~f~Ieg~~~~ELPE~lLG~~Rl~~~d~~~a~~~~~~~ 730 (742)
|+++|||||||+|||+++|||||+|||||||++||+++|+.+++..
T Consensus 671 ~~~~lvvD~af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~~~~~~ 716 (719)
T PLN00188 671 VITTLVVDMAFLVQANTYEELPERLIGAVRVSHVELSSAIVPKLDP 716 (719)
T ss_pred hhhheEEEEEEEEecCChhhCchhheeeEEecccchhhccccCCCC
Confidence 9999999999999999999999999999999999999999876654
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=8.2e-74 Score=587.55 Aligned_cols=207 Identities=54% Similarity=0.929 Sum_probs=201.8
Q ss_pred cccCCCCceEEcCcCccccCcccccCCCceeEEEEEeeecCCccccccCCCCChhhhhhhhcCCceEEEEEEEecC----
Q 004608 512 WTSTDPSTFLIRGKNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPG---- 587 (742)
Q Consensus 512 Ws~~~~~~F~VRg~~Yl~dk~K~~a~~~l~~lv~vD~f~s~~r~~~ia~~~~~~~~~~~~~~~~p~~~ivN~qvP~---- 587 (742)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+|+.++++....+ +.||+||||||||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~-~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEK-GVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCcccccccc-CCCcEEEEEEEccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999887766 57999999999999
Q ss_pred ------CCCceEEEEEeecCCCCC------chhHHHHhcCC---chhhccceecccccccCceeEeeec-CCccEEeeee
Q 004608 588 ------STTYSLALYYMMTTPVKD------APLLESFINGD---DAYRNSRFKLIPYISEGSWIVKQSV-GKKACLIGQA 651 (742)
Q Consensus 588 ------~p~~s~V~Yf~~~~~~~~------~~Ll~rf~~gd---d~fRn~RfKlIp~v~~g~wivk~av-g~kp~l~gk~ 651 (742)
+|+||+|+||++++++.+ .+||+||++|| |+|||+||||||+|+|||||||++| |+||||||++
T Consensus 80 ~f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~ 159 (227)
T PF07059_consen 80 MFGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKK 159 (227)
T ss_pred cccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCc
Confidence 999999999999998876 78999999999 9999999999999999999999999 9999999999
Q ss_pred eEEEEEeCCCEEEEEEEecchHHHHHHHHHhhcccceEEEEEEEEeecCCcCccccceeceEeecccC
Q 004608 652 LEINYFHGKNYLELGVDIGSSTVARGVVSLVLGYLNNLVIEMAFLIQANTEEELPEFLLGTCRLNHLD 719 (742)
Q Consensus 652 ~~~~y~~g~~ylEiDvDi~ss~vAr~~~~l~~g~~~~lvvd~~f~Ieg~~~~ELPE~lLG~~Rl~~~d 719 (742)
++|+||+|+||||||||||||++||+++++|+||+++|||||||+|||+++|||||+||||+||+|||
T Consensus 160 ~~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~Rl~~id 227 (227)
T PF07059_consen 160 LQHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCVRLNHID 227 (227)
T ss_pred cceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEEEeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 3
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=2e-37 Score=318.72 Aligned_cols=205 Identities=17% Similarity=0.208 Sum_probs=187.1
Q ss_pred HHHHHHHcCCCCCCCCcccCCCCCCCccee-eccCCCCCCCccccCCCccccc--c--cccccccCCCCCCEEEEecCCc
Q 004608 111 SLQEAALKGGPHQGVGDHIGCPNSPWESFR-LSGSSRASHTKSIDWTLCSGTH--M--EQVTADVIAPSPWTIFGCQNEG 185 (742)
Q Consensus 111 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~s~~w~~~~~~~--~--~~a~~d~~a~~~WkLv~~kneI 185 (742)
.|++|+++ ++||+.| |+.++++.+++|++|+++||+| | ..||+..+++++|++..+++||
T Consensus 3 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgI 67 (236)
T cd08914 3 RYRGAIAR---------------KRIRLGRKYVISHKEEVPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKI 67 (236)
T ss_pred hhhhhHhh---------------hhhhccceeeeeccccCceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCE
Confidence 38999998 7899999 8899999999999999999998 3 3499999999999999999999
Q ss_pred EEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCC-CCCCce
Q 004608 186 KDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPW-GMKRRD 264 (742)
Q Consensus 186 ~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~-pvs~RD 264 (742)
++|.. ++++.+.||+++++++|+++++++|.|++ .|++||.++.++++|+++|++++ +|+..+ .|| |+++||
T Consensus 68 kVytr--~~s~~l~fk~e~~vdvs~~~l~~LL~D~~-~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~---pPw~Pvk~RD 140 (236)
T cd08914 68 KIYTL--EEHDVLSVWVEKHVKRPAHLAYRLLSDFT-KRPLWDPHFLSCEVIDWVSEDDQ-IYHITC---PIVNNDKPKD 140 (236)
T ss_pred EEEEe--cCCCcEEEEEEEEEcCCHHHHHHHHhChh-hhchhHHhhceEEEEEEeCCCcC-EEEEec---CCCCCCCCce
Confidence 99776 46778999999999999999999999999 89999999999999999999988 677775 478 899999
Q ss_pred EEEEEEEEEcc-CCc-EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccc
Q 004608 265 LLLRRYWRRED-DGT-YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSS 339 (742)
Q Consensus 265 FV~lR~wrr~~-dGs-yvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~~~~ 339 (742)
||+++++++.. +|. |+|..+|+.||.+||.+||||+...+.||+|+|++++ +|+|||++|+|| ||+|.|..+.
T Consensus 141 ~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~-~~~VtY~~~~dP-g~lp~~~~n~ 215 (236)
T cd08914 141 LVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSN-SCTVSYFNQISA-SILPYFAGNL 215 (236)
T ss_pred EEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCC-cEEEEEEEEcCC-ccchheEEec
Confidence 99999988765 775 9999999999999999999999999999999999765 899999999999 9999765443
No 4
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=1.1e-36 Score=313.84 Aligned_cols=197 Identities=19% Similarity=0.143 Sum_probs=179.2
Q ss_pred HHHHHHcCCCCCCCCcccCCCCCCCccee-eccCCCCCCCccccCCCccccc--c--cccccccCCCCCCEEEEecCCcE
Q 004608 112 LQEAALKGGPHQGVGDHIGCPNSPWESFR-LSGSSRASHTKSIDWTLCSGTH--M--EQVTADVIAPSPWTIFGCQNEGK 186 (742)
Q Consensus 112 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~s~~w~~~~~~~--~--~~a~~d~~a~~~WkLv~~kneI~ 186 (742)
+++|+++ ++||+.| |+.+.+..+++|++|+++||+| | ..||+.+.++++|++.+++++|+
T Consensus 3 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIk 67 (235)
T cd08873 3 YREAAAR---------------KKIRLDRKYILSLQREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVT 67 (235)
T ss_pred hHhhhhh---------------hhhhcccceeeecCccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEE
Confidence 8899998 7899999 8878777999999999999998 3 34999999999999999999999
Q ss_pred EecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEE
Q 004608 187 DRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLL 266 (742)
Q Consensus 187 ~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV 266 (742)
+|... ++..+.||+++++++++++++++|.|.+ .|++||.++.++++|++++++..|+|+++. +|||+++||||
T Consensus 68 Vytr~--~s~~l~fk~e~~vd~s~~~v~dlL~D~~-~R~~WD~~~~e~evI~~id~d~~iyy~~~p---~PwPvk~RDfV 141 (235)
T cd08873 68 LYTLE--QDGVLSFCVELKVQTCASDAFDLLSDPF-KRPEWDPHGRSCEEVKRVGEDDGIYHTTMP---SLTSEKPNDFV 141 (235)
T ss_pred EEEec--CCCceEEEEEEEecCCHHHHHHHHhCcc-hhhhhhhcccEEEEEEEeCCCcEEEEEEcC---CCCCCCCceEE
Confidence 97764 5778899999999999999999999999 899999999999999999998877777764 58899999999
Q ss_pred EEEEEEEc-cC-CcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 004608 267 LRRYWRRE-DD-GTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 330 (742)
Q Consensus 267 ~lR~wrr~-~d-GsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkG 330 (742)
++++|++. ++ +.|+|.++||.|+.+||++||||++..+|||+|+|++++ +|+|||++|+|||=
T Consensus 142 ~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~-~t~VtY~~~~dPg~ 206 (235)
T cd08873 142 LLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGT-CTEVSYYNETNPKL 206 (235)
T ss_pred EEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCC-cEEEEEEEEcCCCc
Confidence 99999984 33 349999999999999999999999999999999999765 89999999999864
No 5
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=1.6e-36 Score=314.24 Aligned_cols=216 Identities=18% Similarity=0.163 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCcccCCCCCCCccee-eccCCCC-CCCccccCCCccccc--ccc--cccccCCCCCCE
Q 004608 104 EAAKWIHSLQEAALKGGPHQGVGDHIGCPNSPWESFR-LSGSSRA-SHTKSIDWTLCSGTH--MEQ--VTADVIAPSPWT 177 (742)
Q Consensus 104 ea~~w~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~-~~~~s~~w~~~~~~~--~~~--a~~d~~a~~~Wk 177 (742)
+.|| |++|+++ ++||+.| |+.++++ .+++|++|+++||+| |+| |++.+.++++|+
T Consensus 2 ~~~~----~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~ 62 (240)
T cd08913 2 GERR----YREASAR---------------KKIRLDRKYIVSCKQTEVPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWV 62 (240)
T ss_pred chHH----HHHHHhh---------------hhhhccceeeEecccccCceecccCccceeEEeecCHHHHHhhcccCCCE
Confidence 4566 9999998 7899999 8888887 899999999999998 444 999999999999
Q ss_pred EEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCC
Q 004608 178 IFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLP 257 (742)
Q Consensus 178 Lv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P 257 (742)
+.++++||++|. .+++.++.||++++|++++++++++|.|.+ .|++||.++.++++|+++|++. .+|++..+.| +
T Consensus 63 l~~~~~gI~Vyt--~~~s~~~~fK~e~~vd~s~e~v~~lL~D~~-~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~-~ 137 (240)
T cd08913 63 LSSEKNQVRLYT--LEEDKFLSFKVEMVVHVDAAQAFLLLSDLR-RRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSL-S 137 (240)
T ss_pred EEEccCCEEEEE--EeCCCccEEEEEEEEcCCHHHHHHHHhChh-hhhhhHhhccEEEEEEecCCCc-EEEEEecCCC-C
Confidence 999999999977 456778999999999999999999999999 8999999999999999999986 4687776543 4
Q ss_pred CCCCCceEEEEEEEEEc-cCC-cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc
Q 004608 258 WGMKRRDLLLRRYWRRE-DDG-TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL 335 (742)
Q Consensus 258 ~pvs~RDFV~lR~wrr~-~dG-syvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~ 335 (742)
||+++||||++++|++. ++| .|+|+.+|+.||++||++|||||+..+|||+|.|.+++ .|+|+|++|+||| ++|.+
T Consensus 138 ~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~-~t~vtY~~~~dPG-~LP~~ 215 (240)
T cd08913 138 GHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQ-LTKVSYYNQATPG-VLPYI 215 (240)
T ss_pred CCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCC-cEEEEEEEEeCCc-cccHH
Confidence 69999999999999775 344 59999999999999999999999999999999999765 8999999999996 99965
Q ss_pred -cccchhhHHH
Q 004608 336 -QPSSARSITI 345 (742)
Q Consensus 336 -~~~~~~~i~~ 345 (742)
.+.+....|+
T Consensus 216 ~~N~~~~~~p~ 226 (240)
T cd08913 216 STDIAGLSSEF 226 (240)
T ss_pred Hhhhhhhccch
Confidence 4444444443
No 6
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=3.1e-33 Score=283.78 Aligned_cols=182 Identities=14% Similarity=0.182 Sum_probs=163.4
Q ss_pred CCCCCEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEE
Q 004608 172 APSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQL 251 (742)
Q Consensus 172 a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~ 251 (742)
.+++|++.+.+++++++.....+..++.+|++|+|+++|+++++++.+.+ .|.+||+++.++++||+||+||+|+|.++
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e-~r~~Wd~~~~~~~iie~Id~~T~I~~~~~ 98 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPE-HRIKWDKSLQVYKMLQRIDSDTFICHTIT 98 (204)
T ss_pred cccCCeEEecCCceEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccc-hhhhhcccccceeeEEEeCCCcEEEEEec
Confidence 35899999999999988776556778999999999999999999999987 89999999999999999999999999998
Q ss_pred ccCCCCC-CCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEEEEEEeeeCC
Q 004608 252 YSDWLPW-GMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKHMLAIDWK 329 (742)
Q Consensus 252 ~~~~~P~-pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~-~~~~~Vtyi~qvDpk 329 (742)
++ +++ .+++||||.+|+|++.+++.|++++.|++||.|||++|||||+++++||+|+|+++ +++|+++|++|+|||
T Consensus 99 ~~--~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~Dlk 176 (204)
T cd08904 99 QS--FAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELR 176 (204)
T ss_pred cc--ccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCC
Confidence 75 343 49999999999999877788999999999999999999999999999999999954 457999999999999
Q ss_pred CCcccccccchhhHHHHHHHHHHHHHHHH
Q 004608 330 CWRSYLQPSSARSITIRMLGRVAALRELF 358 (742)
Q Consensus 330 GWip~~~~~~~~~i~~~mL~~va~LRe~~ 358 (742)
||+|.++ .++.++..|++.+..|++-+
T Consensus 177 G~lP~~v--v~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 177 GNLSRSV--IEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred CCCCHHH--HHHHhHHHHHHHHHHHHHhc
Confidence 9999764 56788888998888887643
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=4.8e-32 Score=275.45 Aligned_cols=184 Identities=18% Similarity=0.246 Sum_probs=160.4
Q ss_pred CCCCCCEEEEecC-CcEEecccCCCCCCceEEEEEEecCcHHHHHHH-HHhCCCCccccccccceeEEEEecCCceEEEE
Q 004608 171 IAPSPWTIFGCQN-EGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQT-LMSLGASRSVWDFCFYRGCVVEHLDGHTDIIH 248 (742)
Q Consensus 171 ~a~~~WkLv~~kn-eI~~~~~~~~~s~~~~~Ka~~vV~aspe~Vfev-L~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY 248 (742)
....+|++.++++ +++++....++ .++.+|+++++++++++||+. +.|.+ .|++||+++.++++|+++|++++|+|
T Consensus 21 ~~~~~W~l~~~~~~~i~i~~r~~~~-~~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~d~~~~i~y 98 (208)
T cd08868 21 LTDPGWKLEKNTTWGDVVYSRNVPG-VGKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVIDDNTDISY 98 (208)
T ss_pred hcCCCceEEEecCCCCEEEEEEcCC-CceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEecCCcEEEE
Confidence 3345999999997 99998887765 448999999999999999975 55777 89999999999999999999999999
Q ss_pred EEEccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEEEEEEeee
Q 004608 249 KQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKHMLAID 327 (742)
Q Consensus 249 ~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~-~~~~~Vtyi~qvD 327 (742)
+.+++. +||++++||||++|+|++. ++.|+|+.+|++||.+|+++|||||+...|||+|+|+++ .++|.|+|++++|
T Consensus 99 ~~~~~~-~~~~vs~RDfV~~r~~~~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~D 176 (208)
T cd08868 99 QVAAEA-GGGLVSPRDFVSLRHWGIR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTD 176 (208)
T ss_pred EEecCc-CCCcccccceEEEEEEEec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEEC
Confidence 988764 4689999999999999985 578999999999999999999999999999999999964 3589999999999
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004608 328 WKCWRSYLQPSSARSITIRMLGRVAALRELFRA 360 (742)
Q Consensus 328 pkGWip~~~~~~~~~i~~~mL~~va~LRe~~~~ 360 (742)
||||+|.|+ ....+...+++++++||++++.
T Consensus 177 p~G~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 177 LKGWLPQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred CCCCCccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 999999875 3344445566788899999864
No 8
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.98 E-value=1.8e-31 Score=272.11 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=160.6
Q ss_pred cccccCCCCCCEEEEec-CCcEEecccCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEecCCc
Q 004608 166 VTADVIAPSPWTIFGCQ-NEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLDGH 243 (742)
Q Consensus 166 a~~d~~a~~~WkLv~~k-neI~~~~~~~~~s~~~~~Ka~~vV~aspe~Vf-evL~D~d~~R~eWD~~~~e~~vVE~iD~~ 243 (742)
+..-+.+.++|++.+.. ||++++....+++. +.||+++++++|++++| ++|.|++ .|++||+++.++++|++++++
T Consensus 17 ~~~~l~~~~~W~l~~~~~~gi~V~s~~~~~~~-~~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~~~~~~vi~~~~~~ 94 (209)
T cd08906 17 VEQILAQEENWKFEKNNDNGDTVYTLEVPFHG-KTFILKAFMQCPAELVYQEVILQPE-KMVLWNKTVSACQVLQRVDDN 94 (209)
T ss_pred HHHHhhcccCCEEEEecCCCCEEEEeccCCCC-cEEEEEEEEcCCHHHHHHHHHhChh-hccccCccchhhhheeeccCC
Confidence 44455667899998875 99999887666565 99999999999999997 6899999 899999999999999999999
Q ss_pred eEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC-CCCCeeEEEE
Q 004608 244 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM-NHGKKSVVKH 322 (742)
Q Consensus 244 tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl-~~~~~~~Vty 322 (742)
++|+|... ..|++|++++||||++|+|.+..+ .|+++..|+.|+.+|+++|||||+++++||.|.|. .++++|+|||
T Consensus 95 ~~i~Y~v~-~p~~~~pv~~RDfV~~r~~~~~~~-~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~ 172 (209)
T cd08906 95 TLVSYDVA-AGAAGGVVSPRDFVNVRRIERRRD-RYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIW 172 (209)
T ss_pred cEEEEEEc-cccccCCCCCCceEEEEEEEecCC-cEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEE
Confidence 99998444 335566999999999999998644 48999999999999999999999999999999996 4445899999
Q ss_pred EEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004608 323 MLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 360 (742)
Q Consensus 323 i~qvDpkGWip~~~~~~~~~i~~~mL~~va~LRe~~~~ 360 (742)
++|+|||||+|.|+ .++.++-.+++++.+||++++.
T Consensus 173 ~~~~Dp~G~lP~~l--vN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 173 ILNTDLKGRLPRYL--IHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EEecCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999764 2344445566778899999863
No 9
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.97 E-value=4.8e-31 Score=266.59 Aligned_cols=176 Identities=24% Similarity=0.332 Sum_probs=153.0
Q ss_pred CCCCEEEEecCCcEEecccCCCC-CCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEE
Q 004608 173 PSPWTIFGCQNEGKDRGSRGKWD-DHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQL 251 (742)
Q Consensus 173 ~~~WkLv~~kneI~~~~~~~~~s-~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~ 251 (742)
..+|++..++++|+++.+..+++ .++.||++++|++++++|++.|++ .|++||+++.++++|+++|++++|+|+++
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~i~y~~~ 94 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTEVYQYVT 94 (197)
T ss_pred cCCceEEecCCcEEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcEEEEEEe
Confidence 57999999999999988777544 789999999999999999999984 58999999999999999999999999999
Q ss_pred ccCCCCCCCCCceEEEEEEEEEc-cCCcEEEEEEecCCC-CCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCC
Q 004608 252 YSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWK 329 (742)
Q Consensus 252 ~~~~~P~pvs~RDFV~lR~wrr~-~dGsyvI~~~SV~hp-~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpk 329 (742)
+ .|||+++||||++|+|+.. ++|+|+|+++|+.|| .+|+ |||||..+.|||+|+|++++ +|+|||++++|||
T Consensus 95 ~---~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~~-~t~vty~~~~Dp~ 168 (197)
T cd08869 95 N---SMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGSG-KSRVTHICRVDLR 168 (197)
T ss_pred e---CCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCCC-CeEEEEEEEECCC
Confidence 7 4789999999999999875 678899999999995 6666 99999999999999999755 8999999999999
Q ss_pred CCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004608 330 CWRSYLQPSSARSITIRMLGRVAALRELFRA 360 (742)
Q Consensus 330 GWip~~~~~~~~~i~~~mL~~va~LRe~~~~ 360 (742)
||+|.|+.+...++... .|..||+.|.+
T Consensus 169 G~iP~wl~N~~~~~~~~---~~~~l~~~~~~ 196 (197)
T cd08869 169 GRSPEWYNKVYGHLCAR---ELLRIRDSFRQ 196 (197)
T ss_pred CCCCceeecchHhHHHH---HHHHHHhhccC
Confidence 99997654433344333 45689998863
No 10
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=1.5e-30 Score=264.41 Aligned_cols=186 Identities=12% Similarity=0.098 Sum_probs=163.4
Q ss_pred ccccccccCCCCCCEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCC
Q 004608 163 MEQVTADVIAPSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG 242 (742)
Q Consensus 163 ~~~a~~d~~a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~ 242 (742)
|..+|..+.++++|++.+++++|++|.+...+ ..+.||++++|++++++|+++|.|.+ .|++||.++.++++|+++++
T Consensus 11 n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~~-~~~~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~~~~~~~vl~~~~~ 88 (205)
T cd08874 11 NLSNLDQCQATAGWSYQCLEKDVVIYYKVFNG-TYHGFLGAGVIKAPLATVWKAVKDPR-TRFLYDTMIKTARIHKTFTE 88 (205)
T ss_pred hHHHHHhhhccCCcEEEecCCCEEEEEecCCC-CcceEEEEEEEcCCHHHHHHHHhCcc-hhhhhHHhhhheeeeeecCC
Confidence 45589999999999999999999998886665 78999999999999999999999999 89999999999999999999
Q ss_pred ceEEEEEEEccCCCCCCC--CCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCC-CeEEEEEeceEEEEEeC---CCCC
Q 004608 243 HTDIIHKQLYSDWLPWGM--KRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQK-GSVRACLKSGGYVITPM---NHGK 316 (742)
Q Consensus 243 ~tdIvY~~~~~~~~P~pv--s~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~-G~VRaei~~gGwvI~Pl---~~~~ 316 (742)
++.|+|+++. .|||+ ++||||+++.|+.. ++.++|..+||.||.+|+.+ |||||..++|||+|+|+ +++
T Consensus 89 d~~i~y~~~~---~Pwp~~~~~RDfV~l~~~~~~-~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~- 163 (205)
T cd08874 89 DICLVYLVHE---TPLCLLKQPRDFCCLQVEAKE-GELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQ- 163 (205)
T ss_pred CeEEEEEEec---CCCCCCCCCCeEEEEEEEEEC-CCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCC-
Confidence 9999999886 46666 99999999999874 55677999999999999996 99999999999999999 544
Q ss_pred eeEEEEEEeeeCC-CCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004608 317 KSVVKHMLAIDWK-CWRSYL-QPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 317 ~~~Vtyi~qvDpk-GWip~~-~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
+|+|||++|+||| |-+|.| .+.+.... ...+|.|+.|++
T Consensus 164 ~t~vty~~q~DPggg~iP~~l~N~~~~~~----p~~~~~~~~~~~ 204 (205)
T cd08874 164 YTRVIYIAQVALCGPDVPAQLLSSLSKRQ----PLVIARLALFLE 204 (205)
T ss_pred cEEEEEEEEECCCCCCCCHHHHhHHHHhc----cHHHHHHHHHhh
Confidence 8999999999999 799965 43444443 446789998875
No 11
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.97 E-value=2.7e-30 Score=263.31 Aligned_cols=184 Identities=19% Similarity=0.160 Sum_probs=155.8
Q ss_pred CCCCCEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCC-CccccccccceeEEEEecCCceEEEEEE
Q 004608 172 APSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHLDGHTDIIHKQ 250 (742)
Q Consensus 172 a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~-~R~eWD~~~~e~~vVE~iD~~tdIvY~~ 250 (742)
.+++|++.+.+|+++++........+..||+++++++++++++++|+|... .|.+||.++.++++||++|+++.|+|..
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~ 99 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTV 99 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEe
Confidence 467899999999999986644345567799999999999999999998753 5799999999999999999999988873
Q ss_pred EccCCCCC-CCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEEEEeeeC
Q 004608 251 LYSDWLPW-GMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHMLAIDW 328 (742)
Q Consensus 251 ~~~~~~P~-pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~-~~~~~~Vtyi~qvDp 328 (742)
+ .|.++ ++++||||++++|++.++|+|++...|+.||.|||++|||||+.+++||++.|+. ++++|.|+|++++||
T Consensus 100 ~--p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dp 177 (208)
T cd08903 100 T--PSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDL 177 (208)
T ss_pred c--chhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEecc
Confidence 3 12212 3999999999999998889999999999999999999999999999999999994 345899999999999
Q ss_pred CCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004608 329 KCWRSYLQPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 329 kGWip~~~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
|||+|.++ .+..++..++.++.+||+.++
T Consensus 178 kG~iP~~l--vn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 178 SGYLPQTV--VDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CCCcCHHH--HHHHhhHHHHHHHHHHHHHHh
Confidence 99999754 234444556677889999885
No 12
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.97 E-value=3.5e-30 Score=261.44 Aligned_cols=183 Identities=17% Similarity=0.143 Sum_probs=156.3
Q ss_pred CCCCCEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHh--CCCCccccccccceeEEEEecCCceEEEEE
Q 004608 172 APSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS--LGASRSVWDFCFYRGCVVEHLDGHTDIIHK 249 (742)
Q Consensus 172 a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D--~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~ 249 (742)
...+|++.+++++++++.....+...+.||+++.|++++++++++|.| .+ .|.+||+.+.++++|++++++++|+|+
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~-~r~~Wd~~~~~~~~le~id~~~~i~~~ 98 (206)
T cd08867 20 DTDGWKVLKTVKNITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGG-LRLKWDKSLKHYEVLEKISEDLCVGRT 98 (206)
T ss_pred CcCCcEEEEcCCCcEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCcc-ccccccccccceEEEEEeCCCeEEEEE
Confidence 347899999999999987754444457899999999999999999999 56 799999999999999999999999998
Q ss_pred EEccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEEEEeeeC
Q 004608 250 QLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHMLAIDW 328 (742)
Q Consensus 250 ~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~-~~~~~~Vtyi~qvDp 328 (742)
.+.. ...+++++||||++++|++.++|.|+++++|++||.+|+.+|||||++..|||+|+|+. +.++|.++|++++||
T Consensus 99 ~~p~-~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~Dp 177 (206)
T cd08867 99 ITPS-AAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDL 177 (206)
T ss_pred Eccc-cccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEecc
Confidence 5531 11245999999999999998888999999999999999999999999999999999984 345899999999999
Q ss_pred CCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004608 329 KCWRSYLQPSSARSITIRMLGRVAALRELF 358 (742)
Q Consensus 329 kGWip~~~~~~~~~i~~~mL~~va~LRe~~ 358 (742)
|||+|.++ ....+...++..+..||+++
T Consensus 178 kG~iP~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 178 RGMIPQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CCCCcHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 99999764 23445555677778899875
No 13
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.97 E-value=4.2e-30 Score=260.49 Aligned_cols=167 Identities=23% Similarity=0.327 Sum_probs=143.9
Q ss_pred CCCCEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEc
Q 004608 173 PSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLY 252 (742)
Q Consensus 173 ~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~ 252 (742)
.++|++...+. ..++..+.+|+++.|+++|++|++.+.+ .|++||.++.++++|+++|+|++|+|+.++
T Consensus 35 ~~~~e~~ykK~--------~d~~~lk~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~ 103 (205)
T cd08909 35 SDNTELAYKKV--------GDGNPLRLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTEVYQYVLN 103 (205)
T ss_pred cCCeEEEEecC--------CCCCceEEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcEEEEEEee
Confidence 35677666643 2456788999999999999999988864 599999999999999999999999999998
Q ss_pred cCCCCCCCCCceEEEEEEEEEc-cCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCC
Q 004608 253 SDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCW 331 (742)
Q Consensus 253 ~~~~P~pvs~RDFV~lR~wrr~-~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGW 331 (742)
. |+|+++||||++|+|+++ ++|+|+|+++||+|+++|+. |+|||..+.+||+|+|++++ +|+|||++++|||||
T Consensus 104 ~---~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~g-~trvt~i~~vDpkG~ 178 (205)
T cd08909 104 C---MAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGSG-KSRLTHICRVDLKGH 178 (205)
T ss_pred c---CCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCCC-CEEEEEEEEecCCCC
Confidence 3 568999999999999987 58999999999999999995 99999999999999999876 899999999999999
Q ss_pred ccccc-ccchhhHHHHHHHHHHHHHHHHH
Q 004608 332 RSYLQ-PSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 332 ip~~~-~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
+|.|+ +.++.-++. .++.||+.|.
T Consensus 179 ~P~W~~n~~g~~~~~----~~~~~r~sf~ 203 (205)
T cd08909 179 SPEWYNKGFGHLCAA----EAARIRNSFQ 203 (205)
T ss_pred ChHHHHHhHHHHHHH----HHHHHHhhcc
Confidence 99654 445544433 5678999875
No 14
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.97 E-value=1.2e-29 Score=260.36 Aligned_cols=183 Identities=22% Similarity=0.260 Sum_probs=158.7
Q ss_pred ccCCCCCCEEEEecCCcEEecccCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEE
Q 004608 169 DVIAPSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 247 (742)
Q Consensus 169 d~~a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV-~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIv 247 (742)
.+....+|+++.++++|+++....+++....+|+++++ +++++.++++|+|.+ .|++||+++.++++|+++|++++|+
T Consensus 18 ~~~~~~~W~~~~~~~gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~~~~i~ 96 (222)
T cd08871 18 LCDSTDGWKLKYNKNNVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNPNNDIG 96 (222)
T ss_pred HhcCCCCcEEEEcCCCeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCCCCEEE
Confidence 34445689999999999999887777888999999987 799999999999998 8999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeee
Q 004608 248 HKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAID 327 (742)
Q Consensus 248 Y~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvD 327 (742)
|+.++ +|||+++||||++|.|+..+ |.|+|+.+|+.|+.+|+++|||||.+..+||+|+|++++ +|.|||+.|+|
T Consensus 97 y~~~~---~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~-~t~vt~~~~~D 171 (222)
T cd08871 97 YYSAK---CPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPK-GCTLTYVTQND 171 (222)
T ss_pred EEEeE---CCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCC-CEEEEEEEecC
Confidence 99997 68899999999999999854 889999999999999999999999999999999999754 79999999999
Q ss_pred CCCCcccc-cccchhhHHHHHHHHHHHHHHHHHh
Q 004608 328 WKCWRSYL-QPSSARSITIRMLGRVAALRELFRA 360 (742)
Q Consensus 328 pkGWip~~-~~~~~~~i~~~mL~~va~LRe~~~~ 360 (742)
||||+|.| .+.+....+..+| .+||+.+.+
T Consensus 172 p~G~IP~~lvN~~~~~~~~~~l---~~l~k~~~~ 202 (222)
T cd08871 172 PKGSLPKWVVNKATTKLAPKVM---KKLHKAALK 202 (222)
T ss_pred CCCCcCHHHHHHHHHHHhHHHH---HHHHHHHHH
Confidence 99999965 4445555444433 345554443
No 15
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.97 E-value=1e-29 Score=254.59 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=161.1
Q ss_pred CCCCCEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEE
Q 004608 172 APSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQL 251 (742)
Q Consensus 172 a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~ 251 (742)
..++|++.++++++.+|....+...++.||++++|+..+++|++.+.+.. .|.+||++++++++||+||++|.|+|+++
T Consensus 21 ~~~~Wkl~k~~~~~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~-~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt 99 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPGP-YRLDWDSLMTSMDIIEEFEENCCVMRYTT 99 (202)
T ss_pred cccCcEEEEeCCCEEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhccc-chhcccchhhheeHhhhhcCCcEEEEEEc
Confidence 45789999999999998887767889999999999999999999999877 79999999999999999999999997766
Q ss_pred ccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEEEEeeeCCC
Q 004608 252 YSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHMLAIDWKC 330 (742)
Q Consensus 252 ~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~-~~~~~~Vtyi~qvDpkG 330 (742)
... +...++|||||.++++.+..||. +.+..|++|+..|| |||||+++++||++.|+. ++++|.+|+++|+|+||
T Consensus 100 ~~~-~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG 175 (202)
T cd08902 100 AGQ-LLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRG 175 (202)
T ss_pred ccC-CcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCCCceEEEEEEEecCCC
Confidence 543 44578999999999998877775 77799999998888 999999999999999995 44799999999999999
Q ss_pred CcccccccchhhHHHHHHHHHHHHHHHH
Q 004608 331 WRSYLQPSSARSITIRMLGRVAALRELF 358 (742)
Q Consensus 331 Wip~~~~~~~~~i~~~mL~~va~LRe~~ 358 (742)
|+|..+ .++.++..|++....||+.+
T Consensus 176 ~LPqsi--Idq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 176 MLPQSA--VDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred CccHHH--HHHHhhHHHHHHHHHHHHhc
Confidence 999743 67889999999999999875
No 16
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.97 E-value=4.6e-29 Score=251.19 Aligned_cols=182 Identities=25% Similarity=0.314 Sum_probs=155.3
Q ss_pred cCCCCCCEEEEe-cCCcEEecccCCC-CCCceEEEEEEecCcHHH-HHHHHHhCCCCccccccccceeEEEEecCCceEE
Q 004608 170 VIAPSPWTIFGC-QNEGKDRGSRGKW-DDHPAIMAVGVVDGTSEA-IFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDI 246 (742)
Q Consensus 170 ~~a~~~WkLv~~-kneI~~~~~~~~~-s~~~~~Ka~~vV~aspe~-VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdI 246 (742)
..+..+|++..+ ++++..+.....+ +.+..||++++|++++++ +.+++.|++ .|++||+++.++++|++++++++|
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~~~~~~~i 93 (206)
T smart00234 15 AASEPGWVLSSENENGDEVRSILSPGRSPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEVIDNGTVI 93 (206)
T ss_pred hCCCCccEEccccCCcceEEEEccCCCCceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEEECCCCeE
Confidence 345678999997 7777776654433 578999999999999986 667888888 899999999999999999999999
Q ss_pred EEEEEccCCCCC-CCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEe
Q 004608 247 IHKQLYSDWLPW-GMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLA 325 (742)
Q Consensus 247 vY~~~~~~~~P~-pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~q 325 (742)
+|+.++ +|| |+++||||++|+|+..++|.|+|+.+|+.|+.+|+.+|+|||++..|||+|+|++++ .|+|||+.|
T Consensus 94 ~~~~~~---~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~-~t~vt~~~~ 169 (206)
T smart00234 94 YHYVSK---FVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG-PSKVTWVSH 169 (206)
T ss_pred EEEEEe---cccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC-CeEEEEEEE
Confidence 999887 467 999999999999999778899999999999999999999999999999999999876 699999999
Q ss_pred eeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004608 326 IDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 326 vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
+||+||+|.| .+.+.+..+..++ ..||+.+.
T Consensus 170 ~D~~G~iP~~lvn~~~~~~~~~~~---~~~~~~~~ 201 (206)
T smart00234 170 ADLKGWLPHWLVRSLIKSGLAEFA---KTWVATLQ 201 (206)
T ss_pred EecCCCccceeehhhhhhhHHHHH---HHHHHHHH
Confidence 9999999964 5556666665544 35555554
No 17
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.96 E-value=2.9e-29 Score=255.87 Aligned_cols=184 Identities=17% Similarity=0.157 Sum_probs=154.2
Q ss_pred CCCCCCEEEE-ecCCcEEecccCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEecCCceEEEE
Q 004608 171 IAPSPWTIFG-CQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIH 248 (742)
Q Consensus 171 ~a~~~WkLv~-~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~Vf-evL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY 248 (742)
-.+++|++.+ .+++++++....+++. +.||+++++++++++++ .++.|.+ .+++|++++.++++|+++|++++|+|
T Consensus 22 ~~~~~W~~~~~~~~gi~v~s~~~~~~~-k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~~~~i~y 99 (209)
T cd08905 22 QDQEGWKTEIVAENGDKVLSKVVPDIG-KVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGKDTLITH 99 (209)
T ss_pred ccccCCEEEEecCCCCEEEEEEcCCCC-cEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCCCceEEE
Confidence 3457899995 5889999877666555 99999999999999999 6666778 79999999999999999999999999
Q ss_pred EEEccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEEEEEEeee
Q 004608 249 KQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKHMLAID 327 (742)
Q Consensus 249 ~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~-~~~~~Vtyi~qvD 327 (742)
+...| |..|++++||||++++|++. ++.++++..|+.||.+|+++|||||+...|||+|+|+++ +++|+|+|++++|
T Consensus 100 ~~~~p-~p~~~vs~RD~V~~~~~~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~D 177 (209)
T cd08905 100 EVAAE-TAGNVVGPRDFVSVRCAKRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSID 177 (209)
T ss_pred EEecc-CCCCccCccceEEEEEEEEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeec
Confidence 85432 22234999999999999986 566788889999999999999999999999999999964 3489999999999
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004608 328 WKCWRSYLQPSSARSITIRMLGRVAALRELFRA 360 (742)
Q Consensus 328 pkGWip~~~~~~~~~i~~~mL~~va~LRe~~~~ 360 (742)
||||+|.|+ ....++..+++++.+||+++..
T Consensus 178 pkG~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 178 LKGWLPKSI--INQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred CCCCCCHHH--HHHHhHHhHHHHHHHHHHHHhc
Confidence 999999754 2333444566777899999863
No 18
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.96 E-value=1e-28 Score=256.18 Aligned_cols=188 Identities=20% Similarity=0.195 Sum_probs=154.0
Q ss_pred ccccccCCCCCCEEEEecCCcEEecccCCCCCCc--eEEEEEEec-CcHHHHHHHHHhCCCCccccccccceeEEEEecC
Q 004608 165 QVTADVIAPSPWTIFGCQNEGKDRGSRGKWDDHP--AIMAVGVVD-GTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLD 241 (742)
Q Consensus 165 ~a~~d~~a~~~WkLv~~kneI~~~~~~~~~s~~~--~~Ka~~vV~-aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD 241 (742)
+|..++.+ .+|+++.+++||++|....+++... .+||+++|+ +++++++++|+|.+ .|.+||.++.++++|++++
T Consensus 18 ~~~~~~~~-~~W~l~~~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~vie~l~ 95 (235)
T cd08872 18 YALEDVGA-DGWQLFAEEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHVVETLS 95 (235)
T ss_pred HHHccCCC-CCCEEEEeCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEEEEecC
Confidence 34445544 4899999999999998877766555 699999998 89999999999999 8999999999999999999
Q ss_pred CceEEEEEEEccCCCCCCCCCceEEEEEEEEEccC-------CcEEEEEEecCCCCCCCCCCeEEEEEec----eE----
Q 004608 242 GHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDD-------GTYVILYHSVFHKKCPRQKGSVRACLKS----GG---- 306 (742)
Q Consensus 242 ~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~d-------GsyvI~~~SV~hp~~Pp~~G~VRaei~~----gG---- 306 (742)
++++|+|+.++ +|||+++||||++++|++.++ +.|++++.|+.||.+|+++||||+.... ++
T Consensus 96 ~~~~I~Y~~~k---~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~ 172 (235)
T cd08872 96 QDTLIFHQTHK---RVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSP 172 (235)
T ss_pred CCCEEEEEEcc---CCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeec
Confidence 99999999887 699999999999999998654 5699999999999999999999999733 33
Q ss_pred ----EEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHhcc
Q 004608 307 ----YVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRAKQ 362 (742)
Q Consensus 307 ----wvI~Pl~~~~~~~Vtyi~qvDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~~~~~~ 362 (742)
|.++| +++ +|+|||++++|||||+|.| .+...+... -..|..|-.|+..+-
T Consensus 173 ~~g~~~~t~-~~~-~~~ity~~~~dPgG~iP~wvvn~~~k~~~---P~~l~~~~~~~~~~~ 228 (235)
T cd08872 173 PDGNQEITR-DNI-LCKITYVANVNPGGWAPASVLRAVYKREY---PKFLKRFTSYVQEKT 228 (235)
T ss_pred CCCcccccC-CCC-eEEEEEEEEeCCCCCccHHHHHHHHHhhc---hHHHHHHHHHHHHhc
Confidence 44444 333 8999999999999999965 333333332 234557777877653
No 19
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.96 E-value=2.1e-28 Score=249.17 Aligned_cols=180 Identities=18% Similarity=0.103 Sum_probs=156.6
Q ss_pred CCCCCEEEEecCCcEEecccCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEecCC-ceEEEEE
Q 004608 172 APSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG-HTDIIHK 249 (742)
Q Consensus 172 a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV-~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~-~tdIvY~ 249 (742)
..++|+++.++++|++|....+++....||+++++ ++|+++++++++|.+ .|.+||.++.++++|++.++ +++|+|+
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~~~~i~y~ 97 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPETGSEIIYW 97 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCCCCEEEEE
Confidence 44679999999999999998888888999999977 999999999999999 89999999999999999755 8999999
Q ss_pred EEccCCCCCCCCCceEEEEEEEEEcc-CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC--CCCeeEEEEEEee
Q 004608 250 QLYSDWLPWGMKRRDLLLRRYWRRED-DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN--HGKKSVVKHMLAI 326 (742)
Q Consensus 250 ~~~~~~~P~pvs~RDFV~lR~wrr~~-dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~--~~~~~~Vtyi~qv 326 (742)
.++ +|||+++||||+.|.+..+. +|.|+|+.+|+.||.+|+++||||+....|+|+|+|.+ +.+.|.++|+.+.
T Consensus 98 ~~~---~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 174 (207)
T cd08911 98 EMQ---WPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD 174 (207)
T ss_pred EEE---CCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe
Confidence 997 69999999999999988764 46789999999999999999999999999999999994 2347999999999
Q ss_pred eCCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 004608 327 DWKCWRSYL-QPSSARSITIRMLGRVAALRELF 358 (742)
Q Consensus 327 DpkGWip~~-~~~~~~~i~~~mL~~va~LRe~~ 358 (742)
|||||+|.| .+.+.+..+..+ +.+|++-.
T Consensus 175 dPgG~IP~~lvN~~~~~~~~~~---l~~l~~a~ 204 (207)
T cd08911 175 NPGVNIPSYITSWVAMSGMPDF---LERLRNAA 204 (207)
T ss_pred CCCCccCHHHHHHHHHhhccHH---HHHHHHHH
Confidence 999999965 444555555544 44666554
No 20
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=4.7e-28 Score=243.09 Aligned_cols=175 Identities=21% Similarity=0.279 Sum_probs=149.4
Q ss_pred CCCCEEEEecCCcEEecccC-CCCCCceEEEEEEecCcH-HHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEE
Q 004608 173 PSPWTIFGCQNEGKDRGSRG-KWDDHPAIMAVGVVDGTS-EAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQ 250 (742)
Q Consensus 173 ~~~WkLv~~kneI~~~~~~~-~~s~~~~~Ka~~vV~asp-e~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~ 250 (742)
..||.....+++++++-... .+..++.+|+.+.|+++| +.++++|. .|+.||.++.+.++||+||+++||+||.
T Consensus 26 ~kgW~~~~~~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~----dR~~WD~~m~e~~~Ie~Ld~n~dI~yY~ 101 (205)
T cd08907 26 FKGWHSAPGPDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLR----ERHLWDEDLLHSQVIEALENNTEVYHYV 101 (205)
T ss_pred cCCceeecCCCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhh----chhhhhHHHHhhhhheeecCCCEEEEEE
Confidence 47899999999998876544 457778999999997755 55556666 3999999999999999999999999999
Q ss_pred EccCCCCCCCCCceEEEEEEEEEc-cCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCC
Q 004608 251 LYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWK 329 (742)
Q Consensus 251 ~~~~~~P~pvs~RDFV~lR~wrr~-~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpk 329 (742)
++ .|.|+++||||++|+|+.+ +.|.|+|+++||+|+++||.+| |||..+.+||+|+|.+.+ +|+|||+.++|++
T Consensus 102 ~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~g-~s~ltyi~rvD~r 176 (205)
T cd08907 102 TD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGMG-RSRLTHICRADLR 176 (205)
T ss_pred ec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCCC-CeEEEEEEEeCCC
Confidence 97 5789999999999999865 5678999999999999999999 999999999999999865 8999999999999
Q ss_pred CCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004608 330 CWRSYLQPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 330 GWip~~~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
||+|.|+++.-.++. ...+..||+.|.
T Consensus 177 G~~P~Wynk~~g~~~---a~~l~~ir~sF~ 203 (205)
T cd08907 177 GRSPDWYNKVFGHLC---AMEVARIRDSFP 203 (205)
T ss_pred CCCcHHHHHhHHHHH---HHHHHHHHhhcc
Confidence 999976554333442 335678999885
No 21
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.95 E-value=1.5e-27 Score=243.07 Aligned_cols=178 Identities=15% Similarity=0.130 Sum_probs=152.8
Q ss_pred CCCCCEEEEecCCcEEecccCCCCCCceEEEEEEec-CcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEE
Q 004608 172 APSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVD-GTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQ 250 (742)
Q Consensus 172 a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~-aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~ 250 (742)
+.++|+++.++++|++|....+++..+.|||+++++ +++++++++|+|.+ .|++||.++.+ +++..+++++|+|+.
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~~~i~y~~ 99 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDGETVIYWE 99 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCCCEEEEEE
Confidence 346799999999999999888889999999999997 79999999999999 89999999987 678888889999999
Q ss_pred EccCCCCCCCCCceEEEEEEEEEc-cCC--cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeee
Q 004608 251 LYSDWLPWGMKRRDLLLRRYWRRE-DDG--TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAID 327 (742)
Q Consensus 251 ~~~~~~P~pvs~RDFV~lR~wrr~-~dG--syvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvD 327 (742)
++ +|||+++||||++|.++.. .+| .++|+++|+.||.+|+++|+||+....|+|+|+|.+++ .|+++|+.+.|
T Consensus 100 ~k---~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~-~t~i~~~~~~D 175 (207)
T cd08910 100 VK---YPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK-GSKVFMYYFDN 175 (207)
T ss_pred EE---cCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC-ceEEEEEEEeC
Confidence 97 6999999999999887753 234 36889999999999999999999999999999999754 79999999999
Q ss_pred CCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004608 328 WKCWRSYL-QPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 328 pkGWip~~-~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
||||+|.| .+.+.+..+..+ +.+||+...
T Consensus 176 PgG~IP~wlvN~~~~~~~~~~---l~~l~ka~~ 205 (207)
T cd08910 176 PGGMIPSWLINWAAKNGVPNF---LKDMQKACQ 205 (207)
T ss_pred CCCcchHHHHHHHHHHhhHHH---HHHHHHHHh
Confidence 99999965 444455554443 456776543
No 22
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.95 E-value=8.2e-27 Score=234.34 Aligned_cols=184 Identities=27% Similarity=0.438 Sum_probs=151.5
Q ss_pred CCCCCCEEEEecCCcEEecccC-C-C-CCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEE
Q 004608 171 IAPSPWTIFGCQNEGKDRGSRG-K-W-DDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 247 (742)
Q Consensus 171 ~a~~~WkLv~~kneI~~~~~~~-~-~-s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIv 247 (742)
....+|++..++++..++-+.. . + ..+..+|++++|++++.+++..+++.. . +||+.+.++++|++++++++|+
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~-~--~Wd~~~~~~~~le~~~~~~~i~ 92 (206)
T PF01852_consen 16 EDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDR-E--QWDKMCVEAEVLEQIDEDTDIV 92 (206)
T ss_dssp HTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGG-G--HHSTTEEEEEEEEEEETTEEEE
T ss_pred cCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhH-h--hcccchhhheeeeecCCCCeEE
Confidence 4568999999666543322222 2 2 378999999999999999999999644 2 9999999999999999999999
Q ss_pred EEEEccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCC-CCCeEEEEEeceEEEEEeCCCCCeeEEEEEEee
Q 004608 248 HKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPR-QKGSVRACLKSGGYVITPMNHGKKSVVKHMLAI 326 (742)
Q Consensus 248 Y~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp-~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qv 326 (742)
|+.++..| |+|+++||||++|++++..+|.|+|+.+|++||.+|+ .+|+|||++..+||+|+|++++ .|+|||+.|+
T Consensus 93 ~~~~~~~~-~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~-~~~vt~~~~~ 170 (206)
T PF01852_consen 93 YFVMKSPW-PGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG-RTRVTYVSQV 170 (206)
T ss_dssp EEEEE-CT-TTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC-EEEEEEEEEE
T ss_pred EEEecccC-CCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCC-CceEEEEEEE
Confidence 99998532 3399999999999999978899999999999999999 9999999999999999999876 6999999999
Q ss_pred eCCCCccccc-ccchhhHHHHHHHHHHHHHHHHHhcc
Q 004608 327 DWKCWRSYLQ-PSSARSITIRMLGRVAALRELFRAKQ 362 (742)
Q Consensus 327 DpkGWip~~~-~~~~~~i~~~mL~~va~LRe~~~~~~ 362 (742)
||+||+|.++ +.+.... +...+..||+.+++..
T Consensus 171 D~~G~iP~~~~n~~~~~~---~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 171 DPKGWIPSWLVNMVVKSQ---PPNFLKNLRKALKKQK 204 (206)
T ss_dssp ESSSSSHHHHHHHHHHHH---HHHHHHHHHHHHHHCC
T ss_pred CCCCCChHHHHHHHHHHh---HHHHHHHHHHHHHHhc
Confidence 9999999653 3333333 4556678999988764
No 23
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.95 E-value=3.5e-27 Score=239.35 Aligned_cols=165 Identities=23% Similarity=0.277 Sum_probs=142.5
Q ss_pred CCCEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEcc
Q 004608 174 SPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYS 253 (742)
Q Consensus 174 ~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~ 253 (742)
++|+|...+ ..+++.++.+|+++.+++++++|+.+|.| .|.+||.++.++++|+++|++++|+|++++
T Consensus 36 ~~~el~~~k--------~~~gs~l~~~r~~~~i~a~~~~vl~~lld---~~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~- 103 (204)
T cd08908 36 EQAELSYKK--------VSEGPPLRLWRTTIEVPAAPEEILKRLLK---EQHLWDVDLLDSKVIEILDSQTEIYQYVQN- 103 (204)
T ss_pred CcEEEEEec--------cCCCCCcEEEEEEEEeCCCHHHHHHHHHh---hHHHHHHHhhheEeeEecCCCceEEEEEcc-
Confidence 456665553 34568889999999999999999999975 389999999999999999999999999997
Q ss_pred CCCCCCCCCceEEEEEEEEEc-cCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCc
Q 004608 254 DWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWR 332 (742)
Q Consensus 254 ~~~P~pvs~RDFV~lR~wrr~-~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWi 332 (742)
.|||+++||||++|.|+.. .+|.|+|.++|+.|+.+|+. +|||....|||+|+|++++ +|+|||++++||||++
T Consensus 104 --~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~g-~t~vtyi~~~DPgG~i 178 (204)
T cd08908 104 --SMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGSG-KSKLTYMCRIDLRGHM 178 (204)
T ss_pred --CCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCCC-cEEEEEEEEeCCCCCC
Confidence 5899999999999999864 67889999999999999976 6999999999999999766 8999999999999999
Q ss_pred ccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004608 333 SYL-QPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 333 p~~-~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
|.| .+.++.-++. .+..||+.|.
T Consensus 179 P~W~~N~~g~~~~~----~~~~~r~sf~ 202 (204)
T cd08908 179 PEWYTKSFGHLCAA----EVVKIRDSFS 202 (204)
T ss_pred cHHHHhhHHHHHHH----HHHHHHhhcc
Confidence 965 5555544433 4668999885
No 24
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.95 E-value=1.3e-26 Score=236.12 Aligned_cols=177 Identities=18% Similarity=0.159 Sum_probs=155.3
Q ss_pred CCCEEEEecCC----cEEecccCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEecCC-ceEEE
Q 004608 174 SPWTIFGCQNE----GKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG-HTDII 247 (742)
Q Consensus 174 ~~WkLv~~kne----I~~~~~~~~~s~~~~~Ka~~vV-~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~-~tdIv 247 (742)
.+|+++.++++ +++|....+++.+..||+++++ ++|+++++++|+|.+ .|++||.++.++++|++.++ +++|+
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~~~~~~i~ 100 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDEKSGTEIV 100 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecCCCCcEEE
Confidence 68999999999 9999998888888999999999 679999999999999 89999999999999998554 58999
Q ss_pred EEEEccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC--CCCCeeEEEEEEe
Q 004608 248 HKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM--NHGKKSVVKHMLA 325 (742)
Q Consensus 248 Y~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl--~~~~~~~Vtyi~q 325 (742)
|+.++ +|||+++||||+.|.+....+|.++|+.+|+.||.+|+. |+||+....|+|+|+|+ ++ .+|.++|+.+
T Consensus 101 y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~~~-~~t~~~~~~~ 175 (209)
T cd08870 101 RWVKK---FPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKGDG-QGSACEVTYF 175 (209)
T ss_pred EEEEE---CCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecCCC-CceEEEEEEE
Confidence 99997 799999999999998887668899999999999999999 99999999999999999 44 4899999999
Q ss_pred eeCCCCccccc-ccchhhHHHHHHHHHHHHHHHHH
Q 004608 326 IDWKCWRSYLQ-PSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 326 vDpkGWip~~~-~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
.||+|++|.|+ +.+.+..+. ..+.+||+.+.
T Consensus 176 ~dp~G~IP~wlvN~~~~~~~~---~~l~~l~~a~~ 207 (209)
T cd08870 176 HNPDGGIPRELAKLAVKRGMP---GFLKKLENALR 207 (209)
T ss_pred ECCCCCCCHHHHHHHHHhhhH---HHHHHHHHHHh
Confidence 99999999754 334444433 45567877664
No 25
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.94 E-value=7.9e-26 Score=222.56 Aligned_cols=157 Identities=34% Similarity=0.488 Sum_probs=146.9
Q ss_pred CCCEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEcc
Q 004608 174 SPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYS 253 (742)
Q Consensus 174 ~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~ 253 (742)
.+|+++.+++++++|....+++....+|+++.|++++++|+++|.|.+ .|++||+.+.++++|++++++..|+|+.++
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~- 92 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDID-LRKKWDKNFEEFEVIEEIDEHTDIIYYKTK- 92 (193)
T ss_pred CCeEEEEECCcEEEEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCc-hhhchhhcceEEEEEEEeCCCeEEEEEEee-
Confidence 489999999999998887777778999999999999999999999988 899999999999999999999999999997
Q ss_pred CCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcc
Q 004608 254 DWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRS 333 (742)
Q Consensus 254 ~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip 333 (742)
.|||+++||||+++++....+|.++++.+|++|+.+|+.+++|||.+..+||+|+|++++ .|+|||+.++||+||+|
T Consensus 93 --~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~-~~~vt~~~~~D~~g~iP 169 (193)
T cd00177 93 --PPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPG-KTKVTYVLQVDPKGSIP 169 (193)
T ss_pred --CCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCC-CEEEEEEEeeCCCCCcc
Confidence 578899999999999998777899999999999999999999999999999999999654 89999999999999999
Q ss_pred cc
Q 004608 334 YL 335 (742)
Q Consensus 334 ~~ 335 (742)
.+
T Consensus 170 ~~ 171 (193)
T cd00177 170 KS 171 (193)
T ss_pred HH
Confidence 64
No 26
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.94 E-value=1.1e-25 Score=225.20 Aligned_cols=181 Identities=22% Similarity=0.262 Sum_probs=155.5
Q ss_pred ccCCCCCCEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEE
Q 004608 169 DVIAPSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIH 248 (742)
Q Consensus 169 d~~a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY 248 (742)
.+....+|+++.+++++++|....+++....+|++++|+++|+++++++.|++ .|++||+.+.++++|++++++.+++|
T Consensus 12 ~~~~~~~W~~~~~~~~v~v~~~~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~~~~~~vie~~~~~~~i~~ 90 (195)
T cd08876 12 ALAPDGDWQLVKDKDGIKVYTRDVEGSPLKEFKAVAEVDASIEAFLALLRDTE-SYPQWMPNCKESRVLKRTDDNERSVY 90 (195)
T ss_pred ccCCCCCCEEEecCCCeEEEEEECCCCCeEEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHhhcceEEEeecCCCCcEEEE
Confidence 34445669999999999998887766767899999999999999999999999 79999999999999999999889999
Q ss_pred EEEccCCCCCCCCCceEEEEEEEEEcc-CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeee
Q 004608 249 KQLYSDWLPWGMKRRDLLLRRYWRRED-DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAID 327 (742)
Q Consensus 249 ~~~~~~~~P~pvs~RDFV~lR~wrr~~-dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvD 327 (742)
..++ +|||+++||||+.+.++... +|.++|...|+.|+ +|+.+||||+....++|.|+|++++ +|+|+|++++|
T Consensus 91 ~~~~---~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~~-~t~vt~~~~~d 165 (195)
T cd08876 91 TVID---LPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGNG-KTRVTYQAYAD 165 (195)
T ss_pred EEEe---cccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCCC-eEEEEEEEEeC
Confidence 9987 57889999999998877654 68899999999888 8999999999999999999999865 89999999999
Q ss_pred CCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 004608 328 WKCWRSYL-QPSSARSITIRMLGRVAALRELF 358 (742)
Q Consensus 328 pkGWip~~-~~~~~~~i~~~mL~~va~LRe~~ 358 (742)
|+||+|.+ .+...+..+. ..+++||+..
T Consensus 166 p~g~iP~~lv~~~~~~~~~---~~l~~l~~~~ 194 (195)
T cd08876 166 PGGSIPGWLANAFAKDAPY---NTLENLRKQL 194 (195)
T ss_pred CCCCCCHHHHHHHHHHHHH---HHHHHHHHhh
Confidence 99999975 3333444433 4456777653
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.92 E-value=9.4e-25 Score=223.11 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=162.6
Q ss_pred cccccccCCCCCCEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCc
Q 004608 164 EQVTADVIAPSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH 243 (742)
Q Consensus 164 ~~a~~d~~a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~ 243 (742)
..++.++-+.++|++..++++++++....+++....+|++++|+++++.++++|.|.+ .+++|++.+.++++|++++.+
T Consensus 12 ~~~~~~l~~~~~W~~~~~~~~i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l~~~~~~ 90 (215)
T cd08877 12 QENLKDLDESDGWTLQKESEGIRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKVKQLGRA 90 (215)
T ss_pred HHHHhcccCCCCcEEeccCCCeEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEEeecCCc
Confidence 3456666678899999999999998877777778999999999999999999999999 899999999999999999999
Q ss_pred eEEEEEEEccCCCCCCCCCceEEEEEEE-EEc-cCCcEEEEEEecCCCC---------CCCCC-CeEEEEEeceEEEEEe
Q 004608 244 TDIIHKQLYSDWLPWGMKRRDLLLRRYW-RRE-DDGTYVILYHSVFHKK---------CPRQK-GSVRACLKSGGYVITP 311 (742)
Q Consensus 244 tdIvY~~~~~~~~P~pvs~RDFV~lR~w-rr~-~dGsyvI~~~SV~hp~---------~Pp~~-G~VRaei~~gGwvI~P 311 (742)
+.|+|+.++ +|||+++||+|+.... ... ++|.++|++.|+.|+. +|+.+ |+||+....+||+|+|
T Consensus 91 ~~v~y~~~~---~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p 167 (215)
T cd08877 91 DKVCYLRVD---LPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITP 167 (215)
T ss_pred eEEEEEEEe---CceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEE
Confidence 999999997 7999999999987433 333 7889999999999875 79998 9999999999999999
Q ss_pred CCCCCeeEEEEEEeeeCCCC-cccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004608 312 MNHGKKSVVKHMLAIDWKCW-RSYL-QPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 312 l~~~~~~~Vtyi~qvDpkGW-ip~~-~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
++++ +|.++|+.++||||+ +|.| .+.+.+.++..++. +||+.++
T Consensus 168 ~~~~-~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~---~l~k~~~ 213 (215)
T cd08877 168 ISPT-KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFE---KIQKAAK 213 (215)
T ss_pred cCCC-CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 9865 899999999999998 9964 55566777776654 6665543
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.87 E-value=1.9e-21 Score=196.09 Aligned_cols=187 Identities=17% Similarity=0.132 Sum_probs=155.2
Q ss_pred cCCCCCCEEEEecCCcEEecccCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEecC-CceEEE
Q 004608 170 VIAPSPWTIFGCQNEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLD-GHTDII 247 (742)
Q Consensus 170 ~~a~~~WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV-~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD-~~tdIv 247 (742)
..+..+|+++.+++++.+|-...+.+....+|+.++. ++||+.|+++++|.+ +|++||.++.+.++|+... -+++|+
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~~tg~~vv 103 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDPVTGTEVV 103 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccCCCCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecCCCCceEE
Confidence 4556789999999999987744444557899999998 899999999999999 9999999999999999865 577899
Q ss_pred EEEEccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEE-eC--CCCCeeEEEEEE
Q 004608 248 HKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVIT-PM--NHGKKSVVKHML 324 (742)
Q Consensus 248 Y~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~-Pl--~~~~~~~Vtyi~ 324 (742)
|+..+ +|.|+++||||++|.|...++..|+|+.+||.||.+|+++++||+....+||+|+ +. ++++.|.+.|+.
T Consensus 104 ~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~ 180 (219)
T KOG2761|consen 104 YWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLY 180 (219)
T ss_pred EEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEE
Confidence 99997 7999999999999888876546799999999999999999999999999999999 44 345579999999
Q ss_pred eeeCCCCcccccccc--hhhHHHHHHHHHHHHHHHHHh
Q 004608 325 AIDWKCWRSYLQPSS--ARSITIRMLGRVAALRELFRA 360 (742)
Q Consensus 325 qvDpkGWip~~~~~~--~~~i~~~mL~~va~LRe~~~~ 360 (742)
+.||+|-+|.+..+. ..-+|..+-..-.+++.|...
T Consensus 181 ~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~ 218 (219)
T KOG2761|consen 181 FHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEK 218 (219)
T ss_pred EECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhc
Confidence 999999999654332 234444444444667766553
No 29
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.54 E-value=5.4e-15 Score=161.48 Aligned_cols=168 Identities=19% Similarity=0.240 Sum_probs=136.1
Q ss_pred ccccccccCCCCCCEEEEecCCcEEecccCC--CCCCceEEEEEE-ecCcHHHHHHHHHhCCCCccccccccceeEEEEe
Q 004608 163 MEQVTADVIAPSPWTIFGCQNEGKDRGSRGK--WDDHPAIMAVGV-VDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEH 239 (742)
Q Consensus 163 ~~~a~~d~~a~~~WkLv~~kneI~~~~~~~~--~s~~~~~Ka~~v-V~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~ 239 (742)
+.+++.++...++|+++.+..+++.+....+ +-..-.+||... +.+++.++++++.+.+ .|.+|+.++..+.|||+
T Consensus 392 ~~~~~~~~g~d~nwqlFaeegemkmy~re~eeng~~~Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~~vve~ 470 (611)
T KOG1739|consen 392 MTYSLQDVGGDANWQLFAEEGEMKMYRREVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENFHVVET 470 (611)
T ss_pred hhhhcccccccchhhhhcccCCccccceeeccCCcccCccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhceeeee
Confidence 4567788888888999999998876554443 233346788854 5789999999999999 99999999999999999
Q ss_pred cCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEc----cCC--cEEEEEEecCCCCCCCCCCeEEEEEeceE---EEEE
Q 004608 240 LDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE----DDG--TYVILYHSVFHKKCPRQKGSVRACLKSGG---YVIT 310 (742)
Q Consensus 240 iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~----~dG--syvI~~~SV~hp~~Pp~~G~VRaei~~gG---wvI~ 310 (742)
|.+++-|+|++.+. .||.++||-.++.++|+- ++| .|++|+.|++|.+.|-.+.+||+.+..+. -.+.
T Consensus 471 is~d~~~~~qthkr---vwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~ 547 (611)
T KOG1739|consen 471 ISDDAIIIYQTHKR---VWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVS 547 (611)
T ss_pred ecCCeEEEEecccc---cCCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccC
Confidence 99999888988874 589999999999888874 234 59999999999999999999999875432 2222
Q ss_pred ------eC-CCCCeeEEEEEEeeeCCCCccc
Q 004608 311 ------PM-NHGKKSVVKHMLAIDWKCWRSY 334 (742)
Q Consensus 311 ------Pl-~~~~~~~Vtyi~qvDpkGWip~ 334 (742)
|+ -+.-.|++||+.+++||||.|.
T Consensus 548 ~p~~~q~l~rdd~~ckityvs~vnpggwapa 578 (611)
T KOG1739|consen 548 PPEGNQELSRDDILCKITYVSNVNPGGWAPA 578 (611)
T ss_pred CcccCCcccccceeEEEEEEeeeCCCCcccH
Confidence 22 1235899999999999999994
No 30
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.42 E-value=4e-12 Score=131.08 Aligned_cols=128 Identities=19% Similarity=0.252 Sum_probs=111.9
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc----ccceeEEEEecCCc--------eEEEEEEEccCCCCC-CCCCc
Q 004608 197 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF----CFYRGCVVEHLDGH--------TDIIHKQLYSDWLPW-GMKRR 263 (742)
Q Consensus 197 ~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~----~~~e~~vVE~iD~~--------tdIvY~~~~~~~~P~-pvs~R 263 (742)
.-+=|+.++|...+..+.++|||.. .|-. .+..+++++.++.. ..++|..++. |. .+.+|
T Consensus 59 ~eASR~~glV~m~~~~lVe~lmD~~----kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~---pSpLVp~R 131 (229)
T cd08875 59 TEASRACGLVMMNAIKLVEILMDVN----KWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQV---PSPLVPTR 131 (229)
T ss_pred EEEEeeeEEEecCHHHHHHHHhChh----hhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhccc---CcccccCC
Confidence 4577899999999999999999766 5555 88888999888644 6788988863 33 57999
Q ss_pred eEEEEEEEEEccCCcEEEEEEecCCC-CCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCc
Q 004608 264 DLLLRRYWRREDDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWR 332 (742)
Q Consensus 264 DFV~lR~wrr~~dGsyvI~~~SV~hp-~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWi 332 (742)
||+++||..+.+||+|+|+-.|+++. ..|+.++++|++..++||+|+|+.+| .|+|||+-|+|...|.
T Consensus 132 e~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~nG-~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 132 EFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPNG-YSKVTWVEHVEVDEKP 200 (229)
T ss_pred eEEEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCCC-ceEEEEEEEEeccCCc
Confidence 99999999999999999999999987 67888999999999999999999877 8999999999988873
No 31
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.34 E-value=1.1e-11 Score=127.06 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=98.9
Q ss_pred Cccccccccc--eeEEEEecCCce----EEEEEEEccCCCCCCCCCceEEEEEE-EEEcc-CCcEEEEEEecCCCCCC-C
Q 004608 223 SRSVWDFCFY--RGCVVEHLDGHT----DIIHKQLYSDWLPWGMKRRDLLLRRY-WRRED-DGTYVILYHSVFHKKCP-R 293 (742)
Q Consensus 223 ~R~eWD~~~~--e~~vVE~iD~~t----dIvY~~~~~~~~P~pvs~RDFV~lR~-wrr~~-dGsyvI~~~SV~hp~~P-p 293 (742)
.-++|.+.+. ++++|+..++.. .|+|+.++ +|||+++||||.+.. ....+ ...+++...++.|+.+| +
T Consensus 64 ~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~ 140 (208)
T cd08864 64 YEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESL 140 (208)
T ss_pred hhhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCcc
Confidence 4679999999 899999888666 78888887 799999999999987 33322 14688889999999999 8
Q ss_pred CCCeEEEEEece-EEEEEeCCCCCeeEEEEEE--eeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004608 294 QKGSVRACLKSG-GYVITPMNHGKKSVVKHML--AIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 358 (742)
Q Consensus 294 ~~G~VRaei~~g-GwvI~Pl~~~~~~~Vtyi~--qvDpkGWip~~~~~~~~~i~~~mL~~va~LRe~~ 358 (742)
.+|||||.-..+ .|.+.|.+++..+.|+|++ +.||||+||.|..+ ..+|..+..-+..+-+|+
T Consensus 141 ~~~~Vr~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n--~~~p~aI~~Dv~~fl~W~ 206 (208)
T cd08864 141 YENAVLGRYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTK--LTIPKAIAKDVPLFLDWI 206 (208)
T ss_pred CCCcEEEEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHh--ccCchHHHHhHHHHHHHh
Confidence 999999997666 6777787522356777777 99999999976432 234444444455555554
No 32
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.77 E-value=4.4e-08 Score=85.68 Aligned_cols=91 Identities=25% Similarity=0.468 Sum_probs=66.1
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCCCC
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~ 91 (742)
|||||...+.. + + .-+.|||||.+..|.|||...... ..|.....|..+...++.+. -++|.|..+.+
T Consensus 1 ~~G~L~k~~~~-~-~-~W~~r~~vl~~~~L~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~-------~~~F~i~~~~~- 68 (91)
T cd01246 1 VEGWLLKWTNY-L-K-GWQKRWFVLDNGLLSYYKNKSSMR-GKPRGTILLSGAVISEDDSD-------DKCFTIDTGGD- 68 (91)
T ss_pred CeEEEEEeccc-C-C-CceeeEEEEECCEEEEEecCccCC-CCceEEEEeceEEEEECCCC-------CcEEEEEcCCC-
Confidence 79999998643 2 3 459999999999999999655332 35666666665433333221 36777775433
Q ss_pred CcceeeccCCHHHHHHHHHHHHHH
Q 004608 92 NDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 92 ~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
+.+.|.|.|.+|+.+|++||+.|
T Consensus 69 -~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 -KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred -CEEEEECCCHHHHHHHHHHHHhC
Confidence 78889999999999999999875
No 33
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.72 E-value=1.2e-07 Score=89.47 Aligned_cols=134 Identities=13% Similarity=0.053 Sum_probs=96.2
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcEE
Q 004608 201 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 280 (742)
Q Consensus 201 Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyv 280 (742)
+....|++|+++|++++.|.+ ..++|.+.+.++++++.-+. ...++.... ++...|+|+....+.. +..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~-~~~~~~p~~~~~~vl~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~-- 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVE-RYPEFLPWCTASRVLERDED-ELEAELTVG-----FGGIRESFTSRVTLVP--PES-- 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHH-hhhhhcCCccccEEEEcCCC-EEEEEEEEe-----eccccEEEEEEEEecC--CCE--
Confidence 456778999999999999999 79999999999999997664 345555553 3456888886554432 333
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004608 281 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 281 I~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
|...++.. +.....|.|.++|++++ +|+|+|.++.+++|.+|.+ .+.+....+.++| .+|++-+.
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l---~~f~~~~~ 136 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGEN-ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMV---DAFEKRAK 136 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCCC-CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 35555533 22345789999999865 7999999999999998864 3445556655554 46665544
No 34
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.66 E-value=2.1e-07 Score=79.94 Aligned_cols=100 Identities=26% Similarity=0.340 Sum_probs=76.7
Q ss_pred eeeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCCC
Q 004608 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (742)
Q Consensus 11 ~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~ 90 (742)
.++|||.+...+ +....+.||++|.++.+.+|+..+...+..|.....|+.. +|........ ...-+.|.+.++..
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-~~~~~~f~l~~~~~ 77 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-AKKPHCFEIKTADR 77 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-CCCceEEEEEecCC
Confidence 489999998665 6677899999999999999998877554677777777765 5554433321 22336777776554
Q ss_pred CCcceeeccCCHHHHHHHHHHHHHHH
Q 004608 91 HNDQLKLGASSPEEAAKWIHSLQEAA 116 (742)
Q Consensus 91 ~~~~~~~~~~~~eea~~w~~a~~~a~ 116 (742)
.++.|.|.|.+|+.+|+.+++.++
T Consensus 78 --~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 --RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 788899999999999999999885
No 35
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.60 E-value=2.2e-07 Score=81.39 Aligned_cols=100 Identities=28% Similarity=0.493 Sum_probs=71.9
Q ss_pred eeeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEecCCcce--eeCceEEEEEEeCC
Q 004608 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRES--IHRKVFFIFTLYNT 88 (742)
Q Consensus 11 ~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~--~~~~~~~v~~~yn~ 88 (742)
.++|||+..+ .....+ +.|||||.+..|.+||.........|....-++.. .|....... .....-+.|.|..+
T Consensus 2 ~~~G~L~~~~--~~~~~w-k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 2 IKEGWLLKKS--SSRKKW-KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEE--SSSSSE-EEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEEEC--CCCCCe-EEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeC
Confidence 5899999987 444444 99999999999999996664333566666656554 555433221 22334456666666
Q ss_pred CCCCcceeeccCCHHHHHHHHHHHHHHH
Q 004608 89 SNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (742)
Q Consensus 89 ~~~~~~~~~~~~~~eea~~w~~a~~~a~ 116 (742)
.. ..+.|.|.|.+|..+|+.+|+.|+
T Consensus 78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 55 788899999999999999999985
No 36
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.57 E-value=3.3e-06 Score=79.85 Aligned_cols=141 Identities=10% Similarity=0.059 Sum_probs=84.2
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcEE
Q 004608 201 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 280 (742)
Q Consensus 201 Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyv 280 (742)
+++..|++||++|+++|.|.+ ..++|.+.+.++++++.-++. ..+++.... .....+-+.-+.+..... ++....
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~ 76 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYD-NLAEFIPNLAESRLLERNGNR-VVLEQTGKQ--GILFFKFEARVVLELRER-EEFPRE 76 (144)
T ss_pred eEEEEECCCHHHHHHHHhChh-hHHhhCcCceEEEEEEcCCCE-EEEEEeeeE--EEEeeeeeEEEEEEEEEe-cCCCce
Confidence 678899999999999999999 799999999999999874433 234432210 000000001111111111 110111
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004608 281 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 281 I~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
+.++.+..+ + ....|.|.++|.+++.+|+|+|..+++|++.+|.+ .+.+.... +...+++||+.++
T Consensus 77 i~~~~~~g~--------~--~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~---~~~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVEGD--------F--KRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQD---LPTNLLAIRAEAE 143 (144)
T ss_pred EEEEEcCCc--------h--hceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 222222110 1 23468999999976337999999999999999864 32233333 3345568887654
No 37
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.54 E-value=3.3e-07 Score=83.89 Aligned_cols=100 Identities=19% Similarity=0.316 Sum_probs=65.8
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeeccccCCC--CCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCC
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS--KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~--~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 89 (742)
.||||..-|... ...+ ++|||||.+..|.|||..... .|..++.+.. .++.|.+.-.....+...|.|.|..+
T Consensus 1 KeG~L~K~g~~~-~k~w-kkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~--~~~~v~~~~~~~~~~~~~~~F~i~t~- 75 (103)
T cd01251 1 KEGFMEKTGPKH-TEGF-KKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQE--DGYEVREGLPPGTQGNHWYGVTLVTP- 75 (103)
T ss_pred CceeEEecCCCC-CCCc-eeEEEEEeCCEEEEECCCCCcCcCcEEEeeccc--cceeEeccCCccccccccceEEEEeC-
Confidence 489999876532 2344 999999999999999953322 2233333211 23345321010111223458888765
Q ss_pred CCCcceeeccCCHHHHHHHHHHHHHHHHc
Q 004608 90 NHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 90 ~~~~~~~~~~~~~eea~~w~~a~~~a~~~ 118 (742)
.+++.|.|.|.+|+..||+|++.|+.+
T Consensus 76 --~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 76 --ERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999763
No 38
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.45 E-value=9.6e-07 Score=79.09 Aligned_cols=94 Identities=17% Similarity=0.424 Sum_probs=64.5
Q ss_pred eeeeeEEEeee-cc-cccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEecCCcceeeCceEEEEEEeCC
Q 004608 11 RMEGWLHLIRS-NR-IGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (742)
Q Consensus 11 ~~egWm~~~~~-~~-lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~ 88 (742)
+++|||++-+. .+ ....+ ++|||||.++.|.|||..... .|.....+++ +.|+.. .+. ..-++|.|-++
T Consensus 1 ~~~GwL~kk~~~~g~~~k~W-kkrwfvL~~~~L~yyk~~~~~---~~~~~I~L~~-~~v~~~-~~~---~k~~~F~I~~~ 71 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKW-ARRWFVLKGTTLYWYRSKQDE---KAEGLIFLSG-FTIESA-KEV---KKKYAFKVCHP 71 (96)
T ss_pred CceeEEEEecCCCCccccCc-eeEEEEEECCEEEEECCCCCC---ccceEEEccC-CEEEEc-hhc---CCceEEEECCC
Confidence 37999999643 22 44467 999999999999999955432 3433333444 344421 111 13467888644
Q ss_pred CCCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 89 SNHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 89 ~~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
. .+.+-+.|.|.+|+.+||+|++.|
T Consensus 72 ~--~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 72 V--YKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred C--CcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3 377889999999999999999876
No 39
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.36 E-value=1.2e-05 Score=81.11 Aligned_cols=139 Identities=12% Similarity=0.025 Sum_probs=95.8
Q ss_pred cCcHHHHHHHHHhCCC-CccccccccceeEEEEec----------CCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcc
Q 004608 207 DGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHL----------DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED 275 (742)
Q Consensus 207 ~aspe~VfevL~D~d~-~R~eWD~~~~e~~vVE~i----------D~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~ 275 (742)
.++-+++...|.+--. +-+++.+.+...+.|++. +....|++...+ +|+|+++|||+.|.......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 5666777777665321 457788899999999988 445555555554 78999999999997666543
Q ss_pred ---------CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC------CCCCeeEEEEEEeeeCCCCcccccccch
Q 004608 276 ---------DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM------NHGKKSVVKHMLAIDWKCWRSYLQPSSA 340 (742)
Q Consensus 276 ---------dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl------~~~~~~~Vtyi~qvDpkGWip~~~~~~~ 340 (742)
..+++|+...++|+.+|+.+|+|||.-..=-. |+.+ ++.+.-.=++.+..|+||++|.|...
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~SVE~-ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~q~-- 166 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYESVER-IRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWMQE-- 166 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEEEEEE-EEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHHHh--
Confidence 23599999999999999999999998755433 3433 12223444455566999999976432
Q ss_pred hhHHHHHHHHH
Q 004608 341 RSITIRMLGRV 351 (742)
Q Consensus 341 ~~i~~~mL~~v 351 (742)
..+|..+..-+
T Consensus 167 ~~~p~~Ia~DV 177 (184)
T PF11274_consen 167 MGTPGAIAKDV 177 (184)
T ss_pred ccCcHHHHHHH
Confidence 34444443333
No 40
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.35 E-value=9.9e-07 Score=81.16 Aligned_cols=95 Identities=17% Similarity=0.207 Sum_probs=65.5
Q ss_pred eeeeEEEee--ecccccccccceeeeeecceeeeccccCCC----CCCccceeeeeccceEEecCCccee---eCceEEE
Q 004608 12 MEGWLHLIR--SNRIGLQYSRKRYFLLEDHFLKSFKSVPHS----KNEDPVRSAIIDSCIRVTDNGRESI---HRKVFFI 82 (742)
Q Consensus 12 ~egWm~~~~--~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~----~~~~pi~~~ii~~~~rVed~Gr~~~---~~~~~~v 82 (742)
-||||+.-+ ..++|+.--+.|||||.+..|.|||..+.. .|..||.++ .-||...-+.. +...-|.
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~-----~~ve~~~~~~~~~~~~~~~~~ 76 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKI-----KCVETVKPEKNPPIPERFKYP 76 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcc-----eEEEEecCCcCcccccccCcc
Confidence 489999984 566888677999999999999999976542 234444442 33443222211 1112367
Q ss_pred EEEeCCCCCCcceeeccCCHHHHHHHHHHHHH
Q 004608 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (742)
Q Consensus 83 ~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~ 114 (742)
|.|.-. .+++-|.|.|.+|...||+|+++
T Consensus 77 F~i~t~---~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 77 FQVVHD---EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EEEEeC---CCeEEEEcCCHHHHHHHHHHHHh
Confidence 777653 45777889999999999999986
No 41
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.26 E-value=7.1e-06 Score=77.37 Aligned_cols=96 Identities=22% Similarity=0.484 Sum_probs=65.5
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCCC-
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN- 90 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~- 90 (742)
.||||..-|.. + ..+ ++|||||.++.|.|||.. .+ ..|.....++ +|.|+..-. .+ .=+.|.|+.+.+
T Consensus 2 k~G~L~K~~~~-~-~~W-kkRwfvL~~~~L~yyk~~-~~--~~~~g~I~L~-~~~v~~~~~---~~-~~~~F~i~~~~~~ 70 (125)
T cd01252 2 REGWLLKQGGR-V-KTW-KRRWFILTDNCLYYFEYT-TD--KEPRGIIPLE-NVSIREVED---PS-KPFCFELFSPSDK 70 (125)
T ss_pred cEEEEEEeCCC-C-CCe-EeEEEEEECCEEEEEcCC-CC--CCceEEEECC-CcEEEEccc---CC-CCeeEEEECCccc
Confidence 58999986643 2 445 999999999999999942 22 2454444444 444543211 11 225677777665
Q ss_pred -----------------CCcceeeccCCHHHHHHHHHHHHHHHHc
Q 004608 91 -----------------HNDQLKLGASSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 91 -----------------~~~~~~~~~~~~eea~~w~~a~~~a~~~ 118 (742)
....+.+.|.|.+|+..||.|++.++..
T Consensus 71 ~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 71 QQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred cccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 2245559999999999999999999875
No 42
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.25 E-value=5.2e-06 Score=71.18 Aligned_cols=97 Identities=27% Similarity=0.340 Sum_probs=70.2
Q ss_pred eeeeEEEeeeccc-ccccccceeeeeecceeeeccccCCCCCCccceeeeec-cceEEecCCcceeeCceEEEEEEeCCC
Q 004608 12 MEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIID-SCIRVTDNGRESIHRKVFFIFTLYNTS 89 (742)
Q Consensus 12 ~egWm~~~~~~~l-g~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~ 89 (742)
.+|||...+...+ +....++|||+|.++.|.+|+.++...... .++. .+++|+...... +.-++|.+.+..
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~----~~~~l~~~~v~~~~~~~---~~~~~F~i~~~~ 73 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP----GSIPLSEISVEEDPDGS---DDPNCFAIVTKD 73 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC----CEEEccceEEEECCCCC---CCCceEEEECCC
Confidence 4799999876654 667779999999999999999776543221 2222 233355433322 234688888876
Q ss_pred CCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 90 ~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
.....+.|.|.|.+|+..|++||++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 74 RGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 45678889999999999999999875
No 43
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.24 E-value=2e-06 Score=80.01 Aligned_cols=95 Identities=33% Similarity=0.514 Sum_probs=57.7
Q ss_pred eeeeEEEeeecccccccccceeeeee-cceeeeccccCCCC---------CCccceeeeecc---ceEEec----CCcce
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSK---------NEDPVRSAIIDS---CIRVTD----NGRES 74 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~-~~~~~~yKr~P~~~---------~~~pi~~~ii~~---~~rVed----~Gr~~ 74 (742)
+|||||.-+ |++|..| +.|||||+ +..|.|||- |.+. ...-++++-++. ..++.. +-.+.
T Consensus 1 k~G~l~K~~-~~~~kgW-k~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWG-NKFGKGW-KKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE---TTS-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEec-CCCCcCc-cccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 699999854 4489999 99999999 999999996 2211 112223333321 111111 44566
Q ss_pred eeCceEEEEEEeCCCCCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 75 IHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 75 ~~~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
+|...++| ...++++.|.|.|.+|-..|++||++|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 77777777 346889999999999999999999987
No 44
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.24 E-value=5.5e-06 Score=72.79 Aligned_cols=93 Identities=26% Similarity=0.396 Sum_probs=62.2
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeecc-ceEEecCCcceeeCceEEEEEEeCCCC
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS-CIRVTDNGRESIHRKVFFIFTLYNTSN 90 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~-~~rVed~Gr~~~~~~~~~v~~~yn~~~ 90 (742)
|+|||..-+... ...-++|||||.+..+.||+..+.. ...|. +.|+. .|.|+...... +.-+.|.|..+.
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~-~~~~~--~~i~l~~~~v~~~~~~~---~~~~~f~i~~~~- 71 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDY-DNAHV--KEIDLRRCTVRHNGKQP---DRRFCFEVISPT- 71 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCccc-ccccc--eEEeccceEEecCcccc---CCceEEEEEcCC-
Confidence 689999843222 3334999999999999999976642 12333 33432 24444322111 123678887544
Q ss_pred CCcceeeccCCHHHHHHHHHHHHHH
Q 004608 91 HNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 91 ~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
+.+.|.|.|.+|+.+|+.||+++
T Consensus 72 --~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 --KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred --cEEEEECCCHHHHHHHHHHHhcC
Confidence 77889999999999999999864
No 45
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.23 E-value=3.4e-05 Score=71.91 Aligned_cols=134 Identities=12% Similarity=0.158 Sum_probs=85.2
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCce-EEEEEEEccCCCCCCCCCceEEEEEEEEEccCCc
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT-DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 278 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~t-dIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGs 278 (742)
+.....|++|+++|+++|.|.+ ..++|.+.+.++++++.-++.. ...+.... ..+++. +++.-. ......
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~--~~~~~~- 74 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVE-AYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG----AYGIKD-TYALEY--TWDGAG- 74 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChh-hhhhhCcceEEEEEeccCCCCCEEEEEEEEe----eeeEEE-EEEEEE--EEcCCC-
Confidence 5567789999999999999999 7999999999999886544322 23444332 112222 343222 221222
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccccc-ccchhhHHHHHHHHHHHHHHH
Q 004608 279 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALREL 357 (742)
Q Consensus 279 yvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~-~~~~~~i~~~mL~~va~LRe~ 357 (742)
.|.++.+... +.....+.|.++|.++ .|+|+|..+.+++|++|.+. +...+.++.. .+++||++
T Consensus 75 -~i~~~~~~~~---------~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~ 139 (140)
T cd07819 75 -SVSWTLVEGE---------GNRSQEGSYTLTPKGD--GTRVTFDLTVELTVPLPGFLKRKAEPLVLDE---ALKGLKKR 139 (140)
T ss_pred -cEEEEEeccc---------ceeEEEEEEEEEECCC--CEEEEEEEEEEecCCCCHHHHHHhhhHHHHH---HHHhHhhh
Confidence 2444444321 2333457899999976 59999999999999998653 2233444333 44577765
No 46
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.22 E-value=7.7e-06 Score=73.38 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=59.1
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeec-cceEEecCCcceeeCceEEEEEEeCCCC
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIID-SCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~~ 90 (742)
++|||..-|. +-..+ +.|||||++..|.|||.++... ..| +|.|+ .+|.+....-+ . ..|.|.. .
T Consensus 1 ~~G~L~K~~~--~~k~W-k~RwFvL~~g~L~Yyk~~~~~~-~~~--~G~I~L~~~~i~~~~~~----~--~~F~i~~--~ 66 (91)
T cd01247 1 TNGVLSKWTN--YINGW-QDRYFVLKEGNLSYYKSEAEKS-HGC--RGSIFLKKAIIAAHEFD----E--NRFDISV--N 66 (91)
T ss_pred CceEEEEecc--ccCCC-ceEEEEEECCEEEEEecCccCc-CCC--cEEEECcccEEEcCCCC----C--CEEEEEe--C
Confidence 5899999663 44566 9999999999999999766532 112 34443 12222222111 1 2344432 2
Q ss_pred CCcceeeccCCHHHHHHHHHHHHH
Q 004608 91 HNDQLKLGASSPEEAAKWIHSLQE 114 (742)
Q Consensus 91 ~~~~~~~~~~~~eea~~w~~a~~~ 114 (742)
..+++.|.|.|.+|...|++||++
T Consensus 67 ~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 67 ENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHhh
Confidence 348899999999999999999974
No 47
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.22 E-value=7.5e-06 Score=73.55 Aligned_cols=93 Identities=20% Similarity=0.327 Sum_probs=62.0
Q ss_pred eeeeEEEeeecccccccccceeeeeec--ceeeeccccCCCCCCccceeeeec--cceEEecC----CcceeeCceEEEE
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIID--SCIRVTDN----GRESIHRKVFFIF 83 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~--~~~~~yKr~P~~~~~~pi~~~ii~--~~~rVed~----Gr~~~~~~~~~v~ 83 (742)
+||||..-|. .-..+ ..|||||.+ ..|.|||.... ..|. |.|+ ..+.|+.. |...+.... +.|
T Consensus 1 ~~G~L~K~g~--~~k~W-kkRwFvL~~~~~~L~Yy~~~~~---~~~~--g~I~L~~~~~v~~~~~~~~~~~~~~~~-~~f 71 (101)
T cd01235 1 CEGYLYKRGA--LLKGW-KPRWFVLDPDKHQLRYYDDFED---TAEK--GCIDLAEVKSVNLAQPGMGAPKHTSRK-GFF 71 (101)
T ss_pred CeEEEEEcCC--CCCCc-cceEEEEECCCCEEEEecCCCC---Cccc--eEEEcceeEEEeecCCCCCCCCCCCCc-eEE
Confidence 5899999764 44566 999999995 48999994432 2443 4444 44445431 222222222 345
Q ss_pred EEeCCCCCCcceeeccCCHHHHHHHHHHHHHHH
Q 004608 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (742)
Q Consensus 84 ~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~ 116 (742)
.+. .+.+.+-|.|.|.+|+..|++||+.+|
T Consensus 72 ~i~---t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 72 DLK---TSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEE---eCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 553 245778899999999999999999875
No 48
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.21 E-value=8.5e-06 Score=74.64 Aligned_cols=91 Identities=21% Similarity=0.454 Sum_probs=67.8
Q ss_pred ceeeeeEEEeeecccccccccceeeeeecc------eeeeccccCCCC--CCccceeeeeccceEEecCCcceeeCceEE
Q 004608 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDH------FLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFF 81 (742)
Q Consensus 10 ~~~egWm~~~~~~~lg~~~~~~ry~vl~~~------~~~~yKr~P~~~--~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~ 81 (742)
++++|||... ..-++|||||++. .|.|||...... +..|.+..-++.+.-|...-..+ ++ |
T Consensus 2 v~k~GyL~K~-------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k--~~--~ 70 (101)
T cd01257 2 VRKSGYLRKQ-------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAK--HR--H 70 (101)
T ss_pred ccEEEEEeEe-------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccc--cC--e
Confidence 5689999984 4558899999998 799999766432 25677777777777776422211 22 6
Q ss_pred EEEEeCCCCCCcceeeccCCHHHHHHHHHHHHH
Q 004608 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (742)
Q Consensus 82 v~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~ 114 (742)
+|.|+.+ ...+-|+|.|.+|...|+++|.+
T Consensus 71 ~f~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 7777763 46888999999999999999865
No 49
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.17 E-value=9.2e-06 Score=73.85 Aligned_cols=95 Identities=14% Similarity=0.266 Sum_probs=66.9
Q ss_pred eeeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEec-CCcceeeCceEEEEEEeCCC
Q 004608 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD-NGRESIHRKVFFIFTLYNTS 89 (742)
Q Consensus 11 ~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed-~Gr~~~~~~~~~v~~~yn~~ 89 (742)
..+|||..-|.+. ..+ ++|||||++..|.|||.+.. ..|+...-++ +|.|+. .+..+..++ -++|.|..
T Consensus 3 ~k~G~L~Kkg~~~--k~W-kkRwfvL~~~~L~yyk~~~~---~~~~~~I~L~-~~~v~~~~~~~~~~~~-~~~F~I~t-- 72 (100)
T cd01233 3 SKKGYLNFPEETN--SGW-TRRFVVVRRPYLHIYRSDKD---PVERGVINLS-TARVEHSEDQAAMVKG-PNTFAVCT-- 72 (100)
T ss_pred ceeEEEEeeCCCC--CCc-EEEEEEEECCEEEEEccCCC---ccEeeEEEec-ccEEEEccchhhhcCC-CcEEEEEC--
Confidence 3789999976643 455 99999999999999997543 2555554455 565542 222222222 24677754
Q ss_pred CCCcceeeccCCHHHHHHHHHHHHHHH
Q 004608 90 NHNDQLKLGASSPEEAAKWIHSLQEAA 116 (742)
Q Consensus 90 ~~~~~~~~~~~~~eea~~w~~a~~~a~ 116 (742)
.++++.|.|.|.+|...||.|++..+
T Consensus 73 -~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 73 -KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred -CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 46889999999999999999998764
No 50
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.13 E-value=1.3e-05 Score=72.29 Aligned_cols=91 Identities=25% Similarity=0.410 Sum_probs=61.0
Q ss_pred eeeeEEEeeecccccccccceeeeeec--ceeeeccccCCCCCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCC
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~--~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 89 (742)
++|||...|.......+ ++|||||++ ..|.|||..... .|+-..-+...+-+.+...+ . +.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d~---~p~G~I~L~~~~~~~~~~~~---~---~~F~i~t-- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQDA---KPLGRVDLSGAAFTYDPREE---K---GRFEIHS-- 68 (95)
T ss_pred CcccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCcc---cccceEECCccEEEcCCCCC---C---CEEEEEc--
Confidence 46999999876556777 999999984 479999844322 34333333332222222111 1 2466643
Q ss_pred CCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 90 ~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
..+.+.|.|.|.+|..+||+|++.+
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 3578899999999999999999987
No 51
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.13 E-value=2.2e-05 Score=71.65 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=69.6
Q ss_pred eeeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeec-cceEEecCCcceeeCceEEEEEEeCCC
Q 004608 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIID-SCIRVTDNGRESIHRKVFFIFTLYNTS 89 (742)
Q Consensus 11 ~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~ 89 (742)
.+|||+-.+++.. .-++.|||+|=+..|=|+|.+|...+..-...+.|+ .++.|++.- ....-+.|.|.-+
T Consensus 3 ikeG~L~K~~~~~---~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~----~~~~~~~F~I~~~- 74 (101)
T cd01219 3 LKEGSVLKISSTT---EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD----NLERPHSFLVSGK- 74 (101)
T ss_pred ccceEEEEEecCC---CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC----CCCcCceEEEecC-
Confidence 4799998876543 346789999988899999966544334444456666 357777542 1223344555333
Q ss_pred CCCcceeeccCCHHHHHHHHHHHHHHHHc
Q 004608 90 NHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 90 ~~~~~~~~~~~~~eea~~w~~a~~~a~~~ 118 (742)
.+.+.+.|.|.+|-..||.||+.||++
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhhC
Confidence 378999999999999999999999874
No 52
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.04 E-value=7.7e-05 Score=69.86 Aligned_cols=139 Identities=8% Similarity=-0.124 Sum_probs=83.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcE
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 279 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsy 279 (742)
++.+..+++||++|+++|.|.+ ...+|.+.+.+++++ +++...++...+ + ++.+.|.-...+.....++..|
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p~~~~~~~~---~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPE-VLARCIPGCESLEKI---GPNEYEATVKLK---V-GPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHH-HHHhhccchhhcccc---CCCeEEEEEEEE---E-ccEEEEEEEEEEEEecCCCcEE
Confidence 6778889999999999999999 799999998886655 344444555443 1 3444444333333332223344
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHH-HHHHHHHHHH
Q 004608 280 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRM-LGRVAALREL 357 (742)
Q Consensus 280 vI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~~~~~~~i~~~m-L~~va~LRe~ 357 (742)
.+....... .+.....+.|.++|.+ + .|+|+|..+++++|.+..+...+......++ -..+++||+.
T Consensus 75 ~~~~~~~~~---------~~~~~~~~~~~l~~~~-~-gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 75 TITGEGKGG---------AGFVKGTARVTLEPDG-G-GTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred EEEEEEcCC---------CceEEEEEEEEEEecC-C-cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444332211 1222345689999984 3 6999999999999976333222222232222 2344556554
No 53
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.96 E-value=3.7e-05 Score=70.79 Aligned_cols=96 Identities=23% Similarity=0.258 Sum_probs=63.4
Q ss_pred eeeEEEeeec-ccccccccceeeeeecce-------eeeccccCCCCCCccceeeeeccceEEecCCcce--eeCceEEE
Q 004608 13 EGWLHLIRSN-RIGLQYSRKRYFLLEDHF-------LKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRES--IHRKVFFI 82 (742)
Q Consensus 13 egWm~~~~~~-~lg~~~~~~ry~vl~~~~-------~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~--~~~~~~~v 82 (742)
||||..-|.. +++..-=++|||||.+.. |.|||..+.. .|....-++....| +.|... .+...=|.
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~---k~~g~I~L~~~~~v-~~~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKF---KLEFVIDLESCSQV-DPGLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCC---ccceEEECCccEEE-cccccccccCcccceE
Confidence 8999998553 335544499999999876 5999954432 45444444443333 333211 11122366
Q ss_pred EEEeCCCCCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 83 ~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
|.+. ...+.+-|+|.|.+|...||.+|++.
T Consensus 78 f~i~---t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIE---TIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEE---eCCccEEEEECCHHHHHHHHHHHHhh
Confidence 7776 24678899999999999999999864
No 54
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.95 E-value=0.00013 Score=68.87 Aligned_cols=137 Identities=14% Similarity=0.076 Sum_probs=80.3
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEE--EEEEccCCcE
Q 004608 202 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRR--YWRREDDGTY 279 (742)
Q Consensus 202 a~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR--~wrr~~dGsy 279 (742)
...+|++|+++||++|.|++ ..++|.+. ..+++++. ++....++.. .+..++..+.. .+.....+..
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~-~~p~~~p~-~~~~~~~~-~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~ 71 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAE-RWPEFLPT-VHVERLEL-DGGVERLRMW--------ATAFDGSVHTWTSRRVLDPEGRR 71 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHH-hhhccCCC-ceEEEEEE-cCCEEEEEEE--------EEcCCCcEEEEEEEEEEcCCCCE
Confidence 35689999999999999999 78899998 77787766 3443344421 12223333321 1112222322
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004608 280 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 280 vI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
|....+.-+ + +.....|.|.++|.+++ +|+|+|.+..++++.+|-........+-..+-..+++||++++
T Consensus 72 -i~~~~~~~~------~--~~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 141 (142)
T cd08861 72 -IVFRQEEPP------P--PVASMSGEWRFEPLGGG-GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141 (142)
T ss_pred -EEEEEeeCC------C--ChhhheeEEEEEECCCC-cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhh
Confidence 333333211 1 11233569999999855 7999999999999987721111112222223334667777654
No 55
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.93 E-value=3.2e-05 Score=70.47 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=58.3
Q ss_pred ecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCCCCCcceeeccC
Q 004608 21 SNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGAS 100 (742)
Q Consensus 21 ~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~ 100 (742)
..+.+..| .+|||+|.++.|.|||. |. ..|.-+.-+..-.-||..+.....+ -|+|.|..+ .+++-|-|.
T Consensus 14 ~~~~~~n~-KkRwF~Lt~~~L~Y~k~-~~---~~~~g~I~L~~i~~ve~v~~~~~~~--~~~fqivt~---~r~~yi~a~ 83 (98)
T cd01244 14 AWKKVLHF-KKRYFQLTTTHLSWAKD-VQ---CKKSALIKLAAIKGTEPLSDKSFVN--VDIITIVCE---DDTMQLQFE 83 (98)
T ss_pred CCccCcCC-ceeEEEECCCEEEEECC-CC---CceeeeEEccceEEEEEcCCcccCC--CceEEEEeC---CCeEEEECC
Confidence 34667555 99999999999999993 32 2343333333334444444333222 278888765 368889999
Q ss_pred CHHHHHHHHHHHHHH
Q 004608 101 SPEEAAKWIHSLQEA 115 (742)
Q Consensus 101 ~~eea~~w~~a~~~a 115 (742)
|.+|...||+||+.+
T Consensus 84 s~~E~~~Wi~al~k~ 98 (98)
T cd01244 84 APVEATDWLNALEKQ 98 (98)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999864
No 56
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.92 E-value=3.5e-05 Score=65.50 Aligned_cols=94 Identities=24% Similarity=0.335 Sum_probs=67.2
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEec--CCcceeeCceEEEEEEeCCC
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD--NGRESIHRKVFFIFTLYNTS 89 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed--~Gr~~~~~~~~~v~~~yn~~ 89 (742)
++|||++..... .+.-+.||++|.+..+.+|+..+......|.....+.. +.|.. .+. +.-+.|.|....
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~-----~~~~~f~i~~~~ 72 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS-----GRKNCFEIRTPD 72 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC-----CCCcEEEEecCC
Confidence 589999976544 45559999999999999999666543345555555554 44433 222 234677777665
Q ss_pred CCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 90 ~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
+ ..+.|.|.|.+|+.+|+.+|+.|
T Consensus 73 ~--~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 73 G--RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred C--cEEEEEeCCHHHHHHHHHHHhcC
Confidence 5 78889999999999999999864
No 57
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.85 E-value=8.6e-05 Score=67.85 Aligned_cols=93 Identities=28% Similarity=0.470 Sum_probs=60.3
Q ss_pred eeeeeEEEeeecccccccccceeeeee-cceeeeccccCCCC--CCccceeeeeccceEEe-cCCcceeeCceEEEEEEe
Q 004608 11 RMEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVT-DNGRESIHRKVFFIFTLY 86 (742)
Q Consensus 11 ~~egWm~~~~~~~lg~~~~~~ry~vl~-~~~~~~yKr~P~~~--~~~pi~~~ii~~~~rVe-d~Gr~~~~~~~~~v~~~y 86 (742)
..||||..-|. ...-=++|||||. +..+.+||.+|.+. +..|+....|..+.-+. +.++ -+.|.|-
T Consensus 2 ~k~G~L~K~g~---~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~-------~~~F~i~ 71 (102)
T cd01241 2 VKEGWLHKRGE---YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPR-------PNTFIIR 71 (102)
T ss_pred cEEEEEEeecC---CCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCC-------cceEEEE
Confidence 47999999664 2333489999999 78888999888653 35676666665532221 2221 1344443
Q ss_pred --CCC-CCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 87 --NTS-NHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 87 --n~~-~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
+.. ..++ .+.|.|.||...||+||+.+
T Consensus 72 ~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 72 CLQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred eccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 211 1122 45689999999999999876
No 58
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.79 E-value=0.00012 Score=67.24 Aligned_cols=94 Identities=24% Similarity=0.398 Sum_probs=63.0
Q ss_pred eeeeEEEeee-cccccccccceeeeeecceeeeccccCCCCCCccceeeeec--cc--eEEecCCcceeeCceEEEEEEe
Q 004608 12 MEGWLHLIRS-NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIID--SC--IRVTDNGRESIHRKVFFIFTLY 86 (742)
Q Consensus 12 ~egWm~~~~~-~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~--~~--~rVed~Gr~~~~~~~~~v~~~y 86 (742)
.||||-.=|. =|.=-++ +.|||||.|+.|.|||+.+.+ .|. .++|+ .+ ++..+.++.. ..--+.|.|.
T Consensus 2 ~~G~l~k~~g~~r~~K~W-krRwF~L~~~~L~y~K~~~~~---~~~-~g~IdL~~~~sVk~~~~~~~~--~~~~~~Fei~ 74 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRW-KTRYFTLSGAQLLFQKGKSKD---DPD-DCSIDLSKIRSVKAVAKKRRD--RSLPKAFEIF 74 (101)
T ss_pred cceEEeecCccceeeecc-eeEEEEEeCCEEEEEeccCcc---CCC-CceEEcccceEEeeccccccc--cccCcEEEEE
Confidence 4788855322 2333455 789999999999999977654 233 45555 22 2222233222 1224688885
Q ss_pred CCCCCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 87 n~~~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
.+ ++++-|.|.|.+|+..||+++..|
T Consensus 75 tp---~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 75 TA---DKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred cC---CceEEEEeCCHHHHHHHHHHHHhh
Confidence 54 588999999999999999999987
No 59
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.78 E-value=0.00015 Score=66.25 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=69.0
Q ss_pred eeeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeec-cceEEecCCcceeeCceEEEEEEeCCC
Q 004608 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIID-SCIRVTDNGRESIHRKVFFIFTLYNTS 89 (742)
Q Consensus 11 ~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~ 89 (742)
..|||+..+++ .-+..|||+|=...|=|+++.+... ..--..++|. .++.|++.--. .+.-+-|.||.+
T Consensus 3 ikEG~L~K~~~-----k~~~~R~~FLFnD~LlY~~~~~~~~-~~y~~~~~i~L~~~~V~~~~~~---~~~~~~F~I~~~- 72 (99)
T cd01220 3 IRQGCLLKLSK-----KGLQQRMFFLFSDLLLYTSKSPTDQ-NSFRILGHLPLRGMLTEESEHE---WGVPHCFTIFGG- 72 (99)
T ss_pred eeEEEEEEEeC-----CCCceEEEEEccceEEEEEeecCCC-ceEEEEEEEEcCceEEeeccCC---cCCceeEEEEcC-
Confidence 36999988654 3467899999888887888776433 1223466666 57778763211 134467888844
Q ss_pred CCCcceeeccCCHHHHHHHHHHHHHHHH
Q 004608 90 NHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (742)
Q Consensus 90 ~~~~~~~~~~~~~eea~~w~~a~~~a~~ 117 (742)
.+.+.+.|.|.+|...||+++++||+
T Consensus 73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 --QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 57799999999999999999999986
No 60
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.72 E-value=0.00014 Score=68.71 Aligned_cols=80 Identities=25% Similarity=0.472 Sum_probs=60.8
Q ss_pred cceeeeeecceeeeccccCCCCCCccceeeeeccceEEecCCcce--------eeCceEEEEEEeCCCCCCcceeeccCC
Q 004608 30 RKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRES--------IHRKVFFIFTLYNTSNHNDQLKLGASS 101 (742)
Q Consensus 30 ~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~--------~~~~~~~v~~~yn~~~~~~~~~~~~~~ 101 (742)
++|||||++.+|.|||. |.+ ..|.--.++|.+..|+..+.+. .+...-+.|+|-| .++++.|.|.|
T Consensus 34 ~kRWFvlr~s~L~Y~~~-~~~--~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R~~~l~a~s 107 (121)
T cd01254 34 QKRWFIVKESFLAYMDD-PSS--AQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNRSLKLKCKS 107 (121)
T ss_pred cceeEEEeCCEEEEEcC-CCC--CceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCcEEEEEeCC
Confidence 89999999999999993 333 2555555668888888665531 1123348888854 57899999999
Q ss_pred HHHHHHHHHHHHHH
Q 004608 102 PEEAAKWIHSLQEA 115 (742)
Q Consensus 102 ~eea~~w~~a~~~a 115 (742)
..++..|+++++.|
T Consensus 108 ~~~~~~Wi~~i~~a 121 (121)
T cd01254 108 SRKLKQWMASIEDA 121 (121)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999876
No 61
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=97.63 E-value=0.00097 Score=61.95 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=76.8
Q ss_pred ecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcEEEEEEe
Q 004608 206 VDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHS 285 (742)
Q Consensus 206 V~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI~~~S 285 (742)
|+||+++|++++.|.+ ..++|.+.+.++++++.-+++..+ ..... .....+.|+....... ... +....
T Consensus 1 V~ap~~~V~~~i~D~e-~~~~~~p~~~~v~vl~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~--~~~--~~~~~ 69 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYE-NYPRFFPPVKEVRVLERDGDGMRA-RWEVK-----FGGIKRSWTSRVTEDP--PER--IRFEQ 69 (130)
T ss_dssp ESS-HHHHHHHHTTGG-GHHHHCTTEEEEEEEEEECCEEEE-EEEEC-----TTTTCEEEEEEEEEEC--TTT--EEEES
T ss_pred CCCCHHHHHHHHHHHH-HHHHhCCCCceEEEEEeCCCeEEE-EEEEe-----cCCEEEEEEEEEEEEE--eee--eeeee
Confidence 6899999999999999 799999999999999987664333 33332 2344566655444433 222 33332
Q ss_pred cCCCCCCCCCCeEEEEEeceEEEEEeCCC---CCeeEEEEEEeeeCCCCcccc
Q 004608 286 VFHKKCPRQKGSVRACLKSGGYVITPMNH---GKKSVVKHMLAIDWKCWRSYL 335 (742)
Q Consensus 286 V~hp~~Pp~~G~VRaei~~gGwvI~Pl~~---~~~~~Vtyi~qvDpkGWip~~ 335 (742)
+ .|- .....+.|.++|.++ +..|.|+|.+.++|++++|..
T Consensus 70 ~--------~g~--~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~ 112 (130)
T PF03364_consen 70 I--------SGP--FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGF 112 (130)
T ss_dssp S--------ETT--EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHH
T ss_pred c--------CCC--chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHH
Confidence 2 121 234578999999986 668999999999999999863
No 62
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.56 E-value=0.0028 Score=59.00 Aligned_cols=135 Identities=9% Similarity=-0.032 Sum_probs=82.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcE
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 279 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsy 279 (742)
+.....|++|+++||+++.|.+ ..++|.+.+.+++++.. ... .+..+ .|+ ...+++..... .. ..+..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~~~~~~~~~~~--~~~---~~~~~---~~~-g~~~~~~~~v~-~~-~~~~~ 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMSHVESVEQLDD--TRS---HWKAK---GPA-GLSVEWDAEIT-EQ-VPNER 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChh-hhHHHhhhhcEEEEcCC--Cce---EEEEe---cCC-CCcEEEEEEEe-cc-CCCCE
Confidence 4567789999999999999999 79999999998877642 111 22222 233 45566654322 22 23333
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc-ccccchhhHHHH-HHHHHHHHHHH
Q 004608 280 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY-LQPSSARSITIR-MLGRVAALREL 357 (742)
Q Consensus 280 vI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~-~~~~~~~~i~~~-mL~~va~LRe~ 357 (742)
|.......+. ...+.|.++|.+++ +|+|+|.++.++.+.++. +...+...+..+ +-..++.||++
T Consensus 70 -i~~~~~~~~~-----------~~~~~~~f~~~~~~-~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 136 (139)
T cd07817 70 -IAWRSVEGAD-----------PNAGSVRFRPAPGR-GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQL 136 (139)
T ss_pred -EEEEECCCCC-----------CcceEEEEEECCCC-CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444432211 12467779998754 799999999999987764 211112222222 34455666665
Q ss_pred HH
Q 004608 358 FR 359 (742)
Q Consensus 358 ~~ 359 (742)
++
T Consensus 137 aE 138 (139)
T cd07817 137 VE 138 (139)
T ss_pred hh
Confidence 43
No 63
>PF15409 PH_8: Pleckstrin homology domain
Probab=97.55 E-value=0.00017 Score=64.67 Aligned_cols=84 Identities=29% Similarity=0.412 Sum_probs=58.3
Q ss_pred eeEEEeeecccccccccceeeee--ecceeeeccccCCC--CCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCC
Q 004608 14 GWLHLIRSNRIGLQYSRKRYFLL--EDHFLKSFKSVPHS--KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (742)
Q Consensus 14 gWm~~~~~~~lg~~~~~~ry~vl--~~~~~~~yKr~P~~--~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 89 (742)
|||-.=.+++ . +=-++||||| +.-.|.||+...+. .|..||..++|..+. ..++.++..
T Consensus 1 G~llKkrr~~-l-qG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~----~~~~I~ids----------- 63 (89)
T PF15409_consen 1 GWLLKKRRKP-L-QGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK----KSRRIDIDS----------- 63 (89)
T ss_pred Ccceeecccc-C-CCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC----CCCEEEEEc-----------
Confidence 5666633333 3 4449999999 99999999955542 467888888886542 233333321
Q ss_pred CCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 90 ~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
+ .....+.|.|.+|..+|+.||+.|
T Consensus 64 g-~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 64 G-DEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred C-CeEEEEEcCCHHHHHHHHHHHHhc
Confidence 1 335568899999999999999987
No 64
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.54 E-value=0.0035 Score=60.95 Aligned_cols=139 Identities=11% Similarity=0.057 Sum_probs=82.8
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEE-EEEEccCCcEE
Q 004608 202 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRR-YWRREDDGTYV 280 (742)
Q Consensus 202 a~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR-~wrr~~dGsyv 280 (742)
-..+|++||++||+++.|+. ..++|.+.+.++++++. +++....-.... .. .. .++.-- +.+..+...+.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~-~~P~~~~~~~~~~~l~~-~~~~~~~r~~i~---~~--~~--g~~~~w~s~~~~~~~~~~ 75 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIA-TWPDLFSEYAEAEVLEE-DGDTVRFRLTMH---PD--AN--GTVWSWVSERTLDPVNRT 75 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhh-hhhhhccceEEEEEEEe-cCCeEEEEEEEE---ec--cC--CEEEEEEEEEEecCCCcE
Confidence 35678999999999999999 79999999999999985 444333333222 11 11 121111 11122333444
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004608 281 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 360 (742)
Q Consensus 281 I~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~~~~~~~i~~~mL~~va~LRe~~~~ 360 (742)
|.++.+ +. +|-. ...+.|.++|++++ |+|+|......++-.|.........+-..+-..+++||+..+.
T Consensus 76 i~~~~~--~~-~p~~------~m~~~W~f~~~~~g--T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 76 VRARRV--ET-GPFA------YMNIRWEYTEVPEG--TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred EEEEEe--cC-CCcc------eeeeeEEEEECCCC--EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 555422 22 2211 34678999999764 9999999998764233211112222222244456788887765
No 65
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=97.52 E-value=0.0032 Score=58.26 Aligned_cols=137 Identities=16% Similarity=0.092 Sum_probs=80.3
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcE
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 279 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsy 279 (742)
++.+..|++|+++|+++|.|.+ ....|.+.+.+.++++.-++--.+....+. .. +.+. .+.... ++...
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~-----~g---~~~~-~~i~~~-~~~~~ 71 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFG-GLHKWHPAVASCELEGGGPGVGAVRTVTLK-----DG---GTVR-ERLLAL-DDAER 71 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcC-chhhhccCcceEEeecCCCCCCeEEEEEeC-----CC---CEEE-EEehhc-CccCC
Confidence 6778899999999999999999 788999998888876543201112222221 11 1221 111111 22212
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004608 280 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 358 (742)
Q Consensus 280 vI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~~~~~~~i~~~mL~~va~LRe~~ 358 (742)
.+.++.+.- ..| .....+.|.++|.+++ +|+|+|..+.+++|.++... ....+-..+-..+++|++++
T Consensus 72 ~i~~~~~~~-~~~-------~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 72 RYSYRIVEG-PLP-------VKNYVATIRVTPEGDG-GTRVTWTAEFDPPEGLTDEL--ARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEEEEecCC-CCC-------cccceEEEEEEECCCC-ccEEEEEEEEecCCCcchHH--HHHHHHHHHHHHHHHHHHhh
Confidence 343443321 011 1223578999999764 69999999999998755321 12222222344566787765
No 66
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.50 E-value=0.0005 Score=62.34 Aligned_cols=94 Identities=23% Similarity=0.395 Sum_probs=66.5
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeee---ccceEEecCCcceeeCceEEEEEEeCC
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAII---DSCIRVTDNGRESIHRKVFFIFTLYNT 88 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii---~~~~rVed~Gr~~~~~~~~~v~~~yn~ 88 (742)
--|||-.-..+ +.+--..-|+|||...+|.+||..-..- +++|| |..+|.-+.|- -++- +.|.+||+
T Consensus 3 rkgwl~~~n~~-~m~ggsK~~WFVLt~~~L~wykd~eeKE-----~kyilpLdnLk~Rdve~gf---~sk~-~~FeLfnp 72 (110)
T cd01256 3 RKGWLSISNVG-IMKGGSKDYWFVLTSESLSWYKDDEEKE-----KKYMLPLDGLKLRDIEGGF---MSRN-HKFALFYP 72 (110)
T ss_pred eeeeEEeeccc-eecCCCcceEEEEecceeeeeccccccc-----ccceeeccccEEEeecccc---cCCC-cEEEEEcC
Confidence 45998764433 3334568899999999999999433211 34555 34555555552 2222 88999987
Q ss_pred CCC-----CcceeeccCCHHHHHHHHHHHHHH
Q 004608 89 SNH-----NDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 89 ~~~-----~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
... .+|++++|.|.||...|+-+|-.|
T Consensus 73 d~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 73 DGRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 653 579999999999999999999887
No 67
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.50 E-value=0.00052 Score=63.29 Aligned_cols=92 Identities=21% Similarity=0.346 Sum_probs=61.9
Q ss_pred eeeeEEEeeecc------cccccccceeeeee-cceeeeccccCCCCCCccceeeeec--cceEEecCCcceeeCceEEE
Q 004608 12 MEGWLHLIRSNR------IGLQYSRKRYFLLE-DHFLKSFKSVPHSKNEDPVRSAIID--SCIRVTDNGRESIHRKVFFI 82 (742)
Q Consensus 12 ~egWm~~~~~~~------lg~~~~~~ry~vl~-~~~~~~yKr~P~~~~~~pi~~~ii~--~~~rVed~Gr~~~~~~~~~v 82 (742)
+.|||+.-+..+ +.+.-=++|||||. +..+.|||.++-+ ..|. |+|+ .+..|.+ |.... ++ =+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~--~~p~--G~IdL~~~~~V~~-~~~~~-~~-~~~ 73 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT--TLPQ--GTIDMNQCTDVVD-AEART-GQ-KFS 73 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC--cccc--eEEEccceEEEee-ccccc-CC-ccE
Confidence 479999884442 44555589999997 6789888866422 2453 5654 5666663 22111 11 246
Q ss_pred EEEeCCCCCCcceeeccCCHHHHHHHHHHHH
Q 004608 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (742)
Q Consensus 83 ~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~ 113 (742)
|+|-.+ .+++-|.|.|.+|...|+++|.
T Consensus 74 f~I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 74 ICILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EEEECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 666444 5888899999999999999985
No 68
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.42 E-value=0.00061 Score=64.59 Aligned_cols=105 Identities=19% Similarity=0.310 Sum_probs=66.7
Q ss_pred ceeeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceE--EecCCcceeeCceEEEEEEeC
Q 004608 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR--VTDNGRESIHRKVFFIFTLYN 87 (742)
Q Consensus 10 ~~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~r--Ved~Gr~~~~~~~~~v~~~yn 87 (742)
+.|.|+|.-..... |...-+.|||||+|..|.|||.........|+-+.-++.++. |++--|..-.+.-=|.+++..
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~ 79 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWR 79 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEec
Confidence 35889998764433 666779999999999998888433333356776666664333 332333333333335555543
Q ss_pred CC--------------CCCccee-eccCCHHHHHHHHHHHHHH
Q 004608 88 TS--------------NHNDQLK-LGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 88 ~~--------------~~~~~~~-~~~~~~eea~~w~~a~~~a 115 (742)
.. ....+.- |+|-|.||-..|++|+.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 80 PKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 33 1222223 8899999999999999864
No 69
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.38 E-value=0.00077 Score=62.23 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=61.3
Q ss_pred cccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEe-cCCcceeeCceEEEEEEeCCCCCC-cceeecc
Q 004608 22 NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVT-DNGRESIHRKVFFIFTLYNTSNHN-DQLKLGA 99 (742)
Q Consensus 22 ~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVe-d~Gr~~~~~~~~~v~~~yn~~~~~-~~~~~~~ 99 (742)
.||...--..|||+|+|..|.|||.++... ..|+-..- ..+|.|. |... .+.-|.+.+..+.++. +.+-|.|
T Consensus 13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~-~~p~i~ln-l~gcev~~dv~~----~~~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSN-GAPIGQLN-LKGCEVTPDVNV----AQQKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred chhhhhhheeEEEEEeCCEEEEEccchhcC-CCCeEEEe-cCceEEcccccc----cccceEEEEecCCccCCeEEEEEC
Confidence 344444457899999999999999877654 33422211 2455554 3210 0113999998886544 5688999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 004608 100 SSPEEAAKWIHSLQEAA 116 (742)
Q Consensus 100 ~~~eea~~w~~a~~~a~ 116 (742)
.|.++-++||.|.+.|.
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999983
No 70
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.35 E-value=0.00087 Score=60.87 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=59.5
Q ss_pred eeeeEEEe------eecccccccccceeeeeecceeeeccccCCCCCCccceeeeecc-ceEEec-CCcceeeCceEEEE
Q 004608 12 MEGWLHLI------RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS-CIRVTD-NGRESIHRKVFFIF 83 (742)
Q Consensus 12 ~egWm~~~------~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~-~~rVed-~Gr~~~~~~~~~v~ 83 (742)
|||+|.+= |...-.+.+ +.|||||.|..|.+||...... +.+.....|+- ++.|+- ..-. +-=++|
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~W-k~r~~vL~~~~L~~ykd~~~~~-~~~~~~~~i~l~~~~i~~~~~~~----k~~~~F 74 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSW-DNVYGVLCGQSLSFYKDEKMAA-ENVHGEPPVDLTGAQCEVASDYT----KKKHVF 74 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCc-ceEEEEEeCCEEEEEecCcccc-cCCCCCCcEeccCCEEEecCCcc----cCceEE
Confidence 67888743 334444555 9999999999999999432221 11101112331 444432 1111 112688
Q ss_pred EEeCCCCCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 84 ~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
+|-++ ..+.+-|.|.|.++...|+.||+.|
T Consensus 75 ~l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 75 RLRLP--DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred EEEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 88765 3467788999999999999999753
No 71
>PRK10724 hypothetical protein; Provisional
Probab=97.31 E-value=0.0063 Score=60.14 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=81.2
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccC
Q 004608 197 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDD 276 (742)
Q Consensus 197 ~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~d 276 (742)
.+.++....|++|++++|+++.|.+ ..++|-+.+.+++++++-++.. +...... .. ++ ..-|+....+. .+
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve-~yp~flp~~~~s~vl~~~~~~~-~a~l~v~---~~-g~-~~~f~srv~~~--~~ 84 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQ-SYPQFLPGCTGSRVLESTPGQM-TAAVDVS---KA-GI-SKTFTTRNQLT--SN 84 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHH-HHHHhCcccCeEEEEEecCCEE-EEEEEEe---eC-Cc-cEEEEEEEEec--CC
Confidence 4578888999999999999999999 7999999999999999866542 2222221 11 12 33455444443 23
Q ss_pred CcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 004608 277 GTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 334 (742)
Q Consensus 277 GsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~ 334 (742)
+ -|....++.| .+ ...|.|.++|++++ .|+|++.++..++-.++.
T Consensus 85 ~--~I~~~~~~Gp--------F~--~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~ 129 (158)
T PRK10724 85 Q--SILMQLVDGP--------FK--KLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIE 129 (158)
T ss_pred C--EEEEEecCCC--------hh--hccceEEEEECCCC-CEEEEEEEEEEEchHHHH
Confidence 3 3444555322 12 35789999999754 699999999998877764
No 72
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.25 E-value=0.00077 Score=61.56 Aligned_cols=87 Identities=26% Similarity=0.335 Sum_probs=59.2
Q ss_pred eeEEEeeecccccccccceeeeeec----ceeeeccccCCCCCCccceeeeec-cceEEecCCcceeeCceE---EEEEE
Q 004608 14 GWLHLIRSNRIGLQYSRKRYFLLED----HFLKSFKSVPHSKNEDPVRSAIID-SCIRVTDNGRESIHRKVF---FIFTL 85 (742)
Q Consensus 14 gWm~~~~~~~lg~~~~~~ry~vl~~----~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~---~v~~~ 85 (742)
||+..-|.+ .--.+ +.|||+|.+ ..+.|||..+.. .|+ ++|+ .++.|. .+|.+.+ |.|.+
T Consensus 3 G~l~K~g~~-~~K~w-K~rwF~l~~~~s~~~l~yf~~~~~~---~p~--gli~l~~~~V~-----~v~ds~~~r~~cFel 70 (98)
T cd01245 3 GNLLKRTKS-VTKLW-KTLYFALILDGSRSHESLLSSPKKT---KPI--GLIDLSDAYLY-----PVHDSLFGRPNCFQI 70 (98)
T ss_pred CccccCCCC-ccccc-ceeEEEEecCCCCceEEEEcCCCCC---Ccc--ceeeccccEEE-----EccccccCCCeEEEE
Confidence 666554431 12234 679999998 999999966643 453 3554 555555 3455555 99999
Q ss_pred eCCCCCCcceeeccCCHHHHHHHHHHHHH
Q 004608 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (742)
Q Consensus 86 yn~~~~~~~~~~~~~~~eea~~w~~a~~~ 114 (742)
++...| ....+.|.+ +|+.+||++++.
T Consensus 71 ~~~~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 71 VERALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ecCCCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 999875 344466666 999999999975
No 73
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.10 E-value=0.054 Score=50.04 Aligned_cols=134 Identities=10% Similarity=0.101 Sum_probs=75.2
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcE
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 279 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsy 279 (742)
+..+..|+++|++||++|.|.. ....|.+.+..++++. .+...+.. .+.. .+. .-+..+.....+++..
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~-~~~~w~~~~~~~~~~~--~~~~~~~~-~~~~---~g~----~~~~~~i~~~~~~~~~ 72 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPE-NWPRWWPGVKSVELLS--GGGPGTER-TVRV---AGR----GTVREEITEYDPEPRR 72 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTT-GGGGTSTTEEEEEEEE--ECSTEEEE-EEEE---CSC----SEEEEEEEEEETTTTE
T ss_pred EEEEEEECCCHHHHHHHHhChh-hhhhhhhceEEEEEcc--ccccceeE-EEEe---ccc----cceeEEEEEecCCCcE
Confidence 5567789999999999999999 7889999999888776 22222212 2221 111 2233333333332432
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccccccc-chhhHHHHHHHHHHHHHHHH
Q 004608 280 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPS-SARSITIRMLGRVAALRELF 358 (742)
Q Consensus 280 vI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~~~-~~~~i~~~mL~~va~LRe~~ 358 (742)
+- .+.+ ..++.. ..+.|.+.|.+++ |.|++....++ |+...+... +...+-..+-..+++|++.+
T Consensus 73 ~~-~~~~-------~~~~~~---~~~~~~~~~~~~g--t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 73 IT-WRFV-------PSGFTN---GTGRWRFEPVGDG--TRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAA 138 (139)
T ss_dssp EE-EEEE-------SSSSCE---EEEEEEEEEETTT--EEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE-EEEE-------ecceeE---EEEEEEEEEcCCC--EEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 2222 122222 2567999999865 99999999997 433222111 12222222334566666654
No 74
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.0028 Score=66.97 Aligned_cols=95 Identities=33% Similarity=0.605 Sum_probs=69.0
Q ss_pred eeeeeEEEeeecccccccccceeeeeecceeeecc--ccCCCCCCccceeeeeccceE-EecCCcceeeCceEEEEEEeC
Q 004608 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFK--SVPHSKNEDPVRSAIIDSCIR-VTDNGRESIHRKVFFIFTLYN 87 (742)
Q Consensus 11 ~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yK--r~P~~~~~~pi~~~ii~~~~r-Ved~Gr~~~~~~~~~v~~~yn 87 (742)
+-|||+..+|.||. .++ ..|+|||..++|.||. .+-.-.|..|+- |.++| |||. +.-+-|.+||
T Consensus 261 dREGWLlKlgg~rv-ktW-KrRWFiLtdNCLYYFe~tTDKEPrGIIpLe----Nlsir~VedP-------~kP~cfEly~ 327 (395)
T KOG0930|consen 261 DREGWLLKLGGNRV-KTW-KRRWFILTDNCLYYFEYTTDKEPRGIIPLE----NLSIREVEDP-------KKPNCFELYI 327 (395)
T ss_pred cccceeeeecCCcc-cch-hheeEEeecceeeeeeeccCCCCCcceecc----ccceeeccCC-------CCCCeEEEec
Confidence 47999999998854 344 7899999999999997 222223344433 34444 4433 3457889999
Q ss_pred CCCCCcce-------------------eeccCCHHHHHHHHHHHHHHHHc
Q 004608 88 TSNHNDQL-------------------KLGASSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 88 ~~~~~~~~-------------------~~~~~~~eea~~w~~a~~~a~~~ 118 (742)
++++..++ +|.|.|.||.+.||++++.++.+
T Consensus 328 ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 328 PSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred CCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 88865544 36788999999999999999886
No 75
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.76 E-value=0.041 Score=50.70 Aligned_cols=134 Identities=15% Similarity=0.185 Sum_probs=72.8
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecC--CceEEEEEEEccCCCCCCCCCceEE-EEEEEEEccCCc
Q 004608 202 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLD--GHTDIIHKQLYSDWLPWGMKRRDLL-LRRYWRREDDGT 278 (742)
Q Consensus 202 a~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD--~~tdIvY~~~~~~~~P~pvs~RDFV-~lR~wrr~~dGs 278 (742)
....|++|+++|+++|.|.. ...+|.+.+..++.+..-. ..+ .+..... ++ +. .+- ..+.... +.+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~-~~~~w~~~~~~~~~~~~~~~~~g~-~~~~~~~---~~-g~---~~~~~~~v~~~-~p~~ 72 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFE-NAPEWDPGVVEVEKITDGPVGVGT-RYHQVRK---FL-GR---RIELTYEITEY-EPGR 72 (140)
T ss_pred eEEEEcCCHHHHHHHHHCcc-chhhhccCceEEEEcCCCCCcCcc-EEEEEEE---ec-Cc---eEEEEEEEEEe-cCCc
Confidence 45679999999999999999 7999999988777664211 111 2222221 11 11 111 1111111 2333
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004608 279 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 358 (742)
Q Consensus 279 yvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~~~~~~~i~~~mL~~va~LRe~~ 358 (742)
+ +...... +.++ ..+-|.+.|.++ .|+|+|....+++++.......+...+-..+-..+++|++.+
T Consensus 73 ~-~~~~~~~--------~~~~---~~~~~~~~~~~~--~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 73 R-VVFRGSS--------GPFP---YEDTYTFEPVGG--GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred E-EEEEecC--------CCcc---eEEEEEEEEcCC--ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 2 2223221 1122 246799999875 499999999999776442211122222222334455666655
Q ss_pred H
Q 004608 359 R 359 (742)
Q Consensus 359 ~ 359 (742)
+
T Consensus 139 e 139 (140)
T cd08865 139 E 139 (140)
T ss_pred h
Confidence 4
No 76
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=96.68 E-value=0.00036 Score=79.67 Aligned_cols=91 Identities=26% Similarity=0.292 Sum_probs=73.7
Q ss_pred CCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccc
Q 004608 258 WGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQP 337 (742)
Q Consensus 258 ~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~~ 337 (742)
.|...|||+++| |.++++..|++|...+...| |||.+..+.|+|+|++.+ +++|+|+..+|++|..|.|++
T Consensus 574 ~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~g-~sr~~~i~r~dlkg~~~~wy~ 644 (674)
T KOG2200|consen 574 RPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGGG-QSRVTHICRVDLKGRSPEWYN 644 (674)
T ss_pred CCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCCc-chhhhhhhhhhcccCCchhhh
Confidence 356789999998 78999999999987777788 999999999999999887 789999999999999996544
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHhc
Q 004608 338 -SSARSITIRMLGRVAALRELFRAK 361 (742)
Q Consensus 338 -~~~~~i~~~mL~~va~LRe~~~~~ 361 (742)
.|...+.. .++.+|+.|...
T Consensus 645 k~fg~~c~~----~~~~~r~sf~~~ 665 (674)
T KOG2200|consen 645 KSFGHLCCL----EVARIRDSFHTL 665 (674)
T ss_pred ccccchhhh----hhcccchhhccc
Confidence 45543332 455677766543
No 77
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.40 E-value=0.025 Score=53.34 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=64.9
Q ss_pred eeeeEEEe------e-ecccccccccceeeeeecceeeecccc--CCCC-C-Cccceeeeeccce-EEecCCcceeeCce
Q 004608 12 MEGWLHLI------R-SNRIGLQYSRKRYFLLEDHFLKSFKSV--PHSK-N-EDPVRSAIIDSCI-RVTDNGRESIHRKV 79 (742)
Q Consensus 12 ~egWm~~~------~-~~~lg~~~~~~ry~vl~~~~~~~yKr~--P~~~-~-~~pi~~~ii~~~~-rVed~Gr~~~~~~~ 79 (742)
.||+|+|= | ..+.|...=++||.||+|..|..||.. +... . ..+-...-|.+.+ .|. ....+-
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia-----~dy~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRA-----SDYSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEee-----ccccCC
Confidence 36777764 1 234444444999999999999999933 2211 1 1111233344433 444 334556
Q ss_pred EEEEEEeCCCCCCcceeeccCCHHHHHHHHHHHHHHHH
Q 004608 80 FFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (742)
Q Consensus 80 ~~v~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~~ 117 (742)
-+||+|-...+. .+-|-|.+.||+.+|+.++..|++
T Consensus 77 ~~VF~L~~~~g~--~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 77 PHVFRLRTADWR--EFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CcEEEEEcCCCC--EEEEECCCHHHHHHHHHHHHHHHH
Confidence 678888887654 455669999999999999999987
No 78
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.29 E-value=0.18 Score=44.94 Aligned_cols=114 Identities=14% Similarity=-0.026 Sum_probs=66.4
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcEE
Q 004608 201 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 280 (742)
Q Consensus 201 Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyv 280 (742)
+....|++|+++||++|.|.+ ...+|.+.+..++++....... ....... .. +....++.. +.......-.+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~~~~~-~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPE-RWPEWSPGLERVEVLGGGEGGV-GARFVGG---RK-GGRRLTLTS-EVTEVDPPRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChh-hhhhhCcccceEEEcCCCCccc-eeEEEEE---ec-CCccccceE-EEEEecCCCceE
Confidence 457789999999999999999 7999999999988776422211 1111111 00 011111111 111111111112
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcc
Q 004608 281 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRS 333 (742)
Q Consensus 281 I~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip 333 (742)
....+..+. ....+.|.+.|.+++ .|+|++....+++++.+
T Consensus 75 ~~~~~~~~~-----------~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~ 115 (141)
T cd07812 75 FRVTGGGGG-----------VDGTGEWRLEPEGDG-GTRVTYTVEYDPPGPLL 115 (141)
T ss_pred EEEecCCCC-----------cceeEEEEEEECCCC-cEEEEEEEEEecCCcch
Confidence 212221111 234568999999763 69999999999999874
No 79
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.18 E-value=0.2 Score=47.89 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=64.6
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEe-cCCce-EEEEEEEccCCCCCCCCCceEEEEEEEEEccCC
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEH-LDGHT-DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDG 277 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~-iD~~t-dIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dG 277 (742)
|-....|++|+++||+++.|.+ ..++|.+.+.++++++. -+... ..+.+.... ..+..+.+.-.....+.+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~v~~~~p~ 75 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAE-SWPDWWPGVERVVELEPGDEAGIGARRRYTWRG------LLPYRLRFELRVTRIEPL 75 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChh-hcchhhhceEEEEEccCCCCCCcceEEEEEEEe------cCCcEEEEEEEEEeecCC
Confidence 4456789999999999999999 79999999999888863 22111 122222211 112223222111111222
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 004608 278 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 330 (742)
Q Consensus 278 syvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkG 330 (742)
..+ ..... .+ .++ .+.|.|+|.++ .|+|+|-..++.+|
T Consensus 76 ~~~-~~~~~-g~--------~~~---~~~~~~~~~~~--gt~vt~~~~~~~~~ 113 (146)
T cd07824 76 SLL-EVRAS-GD--------LEG---VGRWTLAPDGS--GTVVRYDWEVRTTK 113 (146)
T ss_pred cEE-EEEEE-Ee--------eeE---EEEEEEEEcCC--CEEEEEEEEEEcCH
Confidence 222 22221 11 122 36799999765 49999999999887
No 80
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=95.94 E-value=0.062 Score=50.90 Aligned_cols=101 Identities=23% Similarity=0.295 Sum_probs=68.0
Q ss_pred eeeeEEEeeecc--cccccccceeeeeecceeeec--cccCCCCC--CccceeeeeccceEEecC-----CcceeeCceE
Q 004608 12 MEGWLHLIRSNR--IGLQYSRKRYFLLEDHFLKSF--KSVPHSKN--EDPVRSAIIDSCIRVTDN-----GRESIHRKVF 80 (742)
Q Consensus 12 ~egWm~~~~~~~--lg~~~~~~ry~vl~~~~~~~y--Kr~P~~~~--~~pi~~~ii~~~~rVed~-----Gr~~~~~~~~ 80 (742)
.-.|||.+.++. .+..-+|.|||-|.......| ..+|.... ..=++++.|+.=..|.+. |+..- .--
T Consensus 11 ~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~--~~~ 88 (123)
T PF12814_consen 11 IGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKP--DHN 88 (123)
T ss_pred cccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCcccccc--ccc
Confidence 446999985544 446789999999999554444 46675321 334567777777777763 33110 022
Q ss_pred EEEEEeCCCCCCcceeeccCCHHHHHHHHHHHHHHHH
Q 004608 81 FIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (742)
Q Consensus 81 ~v~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~~ 117 (742)
|.|.|.. ..+.|.|.|.|.+++.-|+.+++-.++
T Consensus 89 ~si~i~t---~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 89 KSIIIVT---PDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred eEEEEEc---CCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 4555543 357999999999999999999987654
No 81
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.88 E-value=0.16 Score=48.57 Aligned_cols=140 Identities=11% Similarity=0.005 Sum_probs=73.5
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcc-CC-c
Q 004608 201 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DG-T 278 (742)
Q Consensus 201 Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~-dG-s 278 (742)
..+..|++||+.|+++|.|++ ....|.+.++. ++.+++++-..-...+ ..+++ ..|-..-.+...+ .+ .
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~-~~~~~~pg~~~---~~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~ 72 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIE-RVAPCLPGASL---TEVEGDDEYKGTVKVK----LGPIS-ASFKGTARLLEDDEAARR 72 (146)
T ss_pred CceEEecCCHHHHHHHhcCHH-HHHhcCCCcee---ccccCCCeEEEEEEEE----EccEE-EEEEEEEEEEeccCCCcE
Confidence 346679999999999999999 67888776555 4444545433333332 11222 1221111111111 12 2
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHH-HHHHHHHH
Q 004608 279 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLG-RVAALREL 357 (742)
Q Consensus 279 yvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~~~~~~~i~~~mL~-~va~LRe~ 357 (742)
+.+...... ....|.+++.+ -|.+.|.+ + .|+|+|..+++.+|.++.+..........++++ .+++|++.
T Consensus 73 ~~~~~~g~~----~~~~g~~~~~~---~~~l~~~~-~-gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~ 143 (146)
T cd07823 73 AVLEATGKD----ARGQGTAEATV---TLRLSPAG-G-GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEAR 143 (146)
T ss_pred EEEEEEEec----CCCcceEEEEE---EEEEEecC-C-cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 222222110 01112333333 58888843 3 699999999999999986543333333333322 23445544
Q ss_pred H
Q 004608 358 F 358 (742)
Q Consensus 358 ~ 358 (742)
+
T Consensus 144 ~ 144 (146)
T cd07823 144 L 144 (146)
T ss_pred h
Confidence 3
No 82
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.72 E-value=0.038 Score=51.78 Aligned_cols=98 Identities=16% Similarity=0.335 Sum_probs=55.8
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEecC-Cc-----------ceeeC-c
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDN-GR-----------ESIHR-K 78 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~-Gr-----------~~~~~-~ 78 (742)
.||||+|+-..---| ..+|++|..|.+.||+.. .+.++.|-.....=+.|+.. |- |..-. -
T Consensus 2 kEGWmVHyT~~d~~r---KRhYWrLDsK~Itlf~~e---~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~ 75 (117)
T cd01239 2 KEGWMVHYTSSDNRR---KKHYWRLDSKAITLYQEE---SGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTN 75 (117)
T ss_pred ccceEEEEecCccce---eeeEEEecCCeEEEEEcC---CCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCE
Confidence 599999983322111 367999999999999953 34467777666665566542 21 11111 1
Q ss_pred eEEEEE--EeC-CCCCCccee--eccCCHHHHHHHHHHHHHH
Q 004608 79 VFFIFT--LYN-TSNHNDQLK--LGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 79 ~~~v~~--~yn-~~~~~~~~~--~~~~~~eea~~w~~a~~~a 115 (742)
++||=. .|+ +.+...+.+ ......+-|..|-.|+++|
T Consensus 76 vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 76 VYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 222200 011 122222223 3445678889999999886
No 83
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=95.49 E-value=0.63 Score=43.05 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=34.4
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEec
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHL 240 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~i 240 (742)
+.....|+||+++|++++.|++ ..++|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVE-NWPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhh-hcccccCcceEEEEecCC
Confidence 4567789999999999999999 799999998888877543
No 84
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.44 E-value=0.39 Score=45.60 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=32.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEE
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVE 238 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE 238 (742)
+....+|++|+++||+++.|+. ..++|++.+.....++
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~~~~~~~~~ 41 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLK-NWPEWSPWEKLDPDMK 41 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcc-cCcccCchhhcCcceE
Confidence 5667889999999999999999 7999999877655443
No 85
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.85 E-value=1.4 Score=40.48 Aligned_cols=108 Identities=11% Similarity=0.143 Sum_probs=59.3
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcE
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 279 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsy 279 (742)
+....+|++|+++||+++.|.. ....|.+.+...+... +...+.+.+. .. .+. .+.+.........+.+.+
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~-~~~G~~~~~~-~~---~~~---~~~~~~~~~v~~~~p~~~ 72 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPFVRSATGLS-LALGARLRFV-VK---LPG---GPPRSFKPRVTEVEPPRR 72 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccc-cccccChhheeEeccc-cCCCCEEEEE-Ee---CCC---CCcEEEEEEEEEEcCCCE
Confidence 4567789999999999999998 7999998766554431 2334333332 22 111 122332222222223333
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEee
Q 004608 280 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAI 326 (742)
Q Consensus 280 vI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qv 326 (742)
+..+...-+ . +... ....|.++|.+++ .|++++....
T Consensus 73 -~~~~~~~~~---~--~~~~---~~~~~~~~~~~~~-~T~~~~~~~~ 109 (141)
T cd07822 73 -LAWRGGLPF---P--GLLD---GEHSFELEPLGDG-GTRFVHRETF 109 (141)
T ss_pred -eEEEecCCC---C--cEee---EEEEEEEEEcCCC-cEEEEEeeEE
Confidence 333332111 1 1112 2358999998544 6999887533
No 86
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=94.41 E-value=1.2 Score=42.66 Aligned_cols=116 Identities=11% Similarity=-0.015 Sum_probs=70.8
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcEEE
Q 004608 202 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVI 281 (742)
Q Consensus 202 a~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsyvI 281 (742)
+...|++++++|+++|+|++ .|-.++..++.++.++ +.--.-...+ -.+++.+=-..++....++...+.+
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~----~l~~ciPG~~~~e~~~-~~~~~~~~v~----vG~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPE----NLARCIPGVESIEKVG-DEYKGKVKVK----VGPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HH----HHHHHSTTEEEEEEEC-TEEEEEEEEE----SCCCEEEEEEEEEEEEEETTTEEEE
T ss_pred CcEEecCCHHHHHHHhcCHH----HHHhhCCCcEEeeecC-cEEEEEEEEE----eccEEEEEEEEEEEEEcCCCcceEe
Confidence 35678999999999999766 8999999999999998 5433333333 1345554333344444444444545
Q ss_pred EEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccccc
Q 004608 282 LYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ 336 (742)
Q Consensus 282 ~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~ 336 (742)
....-.. .+-+.+.. --.+...+++. |+|+|-..++..|.+..+.
T Consensus 72 ~~~g~g~------~~~~~~~~---~~~~~~~~~~~-T~v~~~~~~~~~G~la~~g 116 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASA---NITLSLEDDGG-TRVTWSADVEVGGPLASLG 116 (140)
T ss_dssp EEEEEEC------TCCEEEEE---EEEEEECCCTC-EEEEEEEEEEEECHHHHC-
T ss_pred eeeccCC------ccceEEEE---EEEEEcCCCCC-cEEEEEEEEEEccCHHHhh
Confidence 4444422 12233322 22234444454 9999999999999987654
No 87
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.36 E-value=0.25 Score=45.71 Aligned_cols=89 Identities=11% Similarity=0.161 Sum_probs=59.8
Q ss_pred cccccccccceeeeeecceeeeccccCCCCCCccceeeeec-cceEEecCCcceeeCceEEEEEEeCCCCCCcceeeccC
Q 004608 22 NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIID-SCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGAS 100 (742)
Q Consensus 22 ~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~ 100 (742)
.++|+.=+..|||+|=+..|=|=+..+.. ..--..++++ .++.|++..=. ..+-..|.|.++ .+.+.+.|.
T Consensus 11 ~K~~rk~~~~R~ffLFnD~LvY~~~~~~~--~~~~~~~~i~L~~~~v~~~~d~---~~~~n~f~I~~~---~kSf~v~A~ 82 (104)
T cd01218 11 TKMCRKKPKQRQFFLFNDILVYGNIVISK--KKYNKQHILPLEGVQVESIEDD---GIERNGWIIKTP---TKSFAVYAA 82 (104)
T ss_pred EEeecCCCceEEEEEecCEEEEEEeecCC--ceeeEeeEEEccceEEEecCCc---ccccceEEEecC---CeEEEEEcC
Confidence 46777888889999988887443332322 1233345665 46666653211 112345667664 568889999
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 004608 101 SPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 101 ~~eea~~w~~a~~~a~~~ 118 (742)
|++|-..|++++++||++
T Consensus 83 s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 83 TETEKREWMLHINKCVTD 100 (104)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999985
No 88
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=92.51 E-value=0.6 Score=43.88 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=54.3
Q ss_pred eeeeEEEe------eecc--cccccccceeeeeecceeeeccc--cCCC--CC-------CccceeeeeccceEEecCCc
Q 004608 12 MEGWLHLI------RSNR--IGLQYSRKRYFLLEDHFLKSFKS--VPHS--KN-------EDPVRSAIIDSCIRVTDNGR 72 (742)
Q Consensus 12 ~egWm~~~------~~~~--lg~~~~~~ry~vl~~~~~~~yKr--~P~~--~~-------~~pi~~~ii~~~~rVed~Gr 72 (742)
.|||+++- |... -.|++ ..=|.||.|..|.+||- .|.. .. ..|+....+.+.+--.+.+-
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~W-k~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSW-KQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---E-EEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCc-cEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 48999985 3222 45666 56699999999999994 2221 11 12344444544333334443
Q ss_pred ceeeCceEEEEEEeCCCCCCcceeeccCCHHHHHHHHHHHHHHHH
Q 004608 73 ESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (742)
Q Consensus 73 ~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~~ 117 (742)
.+ .. +||++- .....++=|.|.|.+|...||.++.-+++
T Consensus 81 ~K--r~--~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~AA 119 (119)
T PF15410_consen 81 TK--RK--NVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAAA 119 (119)
T ss_dssp TT--CS--SEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH--
T ss_pred cc--CC--eEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhcC
Confidence 33 23 345553 23356677999999999999999988764
No 89
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=92.44 E-value=7.4 Score=36.43 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=26.1
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 230 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~ 230 (742)
+..+..|+|||+.||+++.|.. ..++|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCC
Confidence 3456789999999999999999 79999964
No 90
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.93 E-value=2.2 Score=39.94 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=70.1
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeeec-cceEEec--CCcceeeC-ceEEEEEEeC
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIID-SCIRVTD--NGRESIHR-KVFFIFTLYN 87 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed--~Gr~~~~~-~~~~v~~~yn 87 (742)
|+|=|.+++.++ -..+-|+|+|=.+.|=+=|++-. .+..-.-++.|+ ..+.|+| .|++...| ..=..|.|||
T Consensus 4 ~~Gel~~~s~~~---g~~q~R~~FLFD~~LI~CKkd~~-r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~ 79 (109)
T cd01224 4 LQGEATRQKQNK---GWNSSRVLFLFDHQMVLCKKDLI-RRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYS 79 (109)
T ss_pred EeeeEEEEeccc---CCcccEEEEEecceEEEEecccc-cCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEE
Confidence 556566554321 12457999999999988886543 345667777787 5788887 57665323 3455899999
Q ss_pred CCCCCcceeeccCCHHHHHHHHHHHHH
Q 004608 88 TSNHNDQLKLGASSPEEAAKWIHSLQE 114 (742)
Q Consensus 88 ~~~~~~~~~~~~~~~eea~~w~~a~~~ 114 (742)
... ..-+.+-|.|+|+-.+||+||..
T Consensus 80 ~~~-~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 80 EST-DEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred cCC-CeEEEEEECCHHHHHHHHHHHHH
Confidence 854 45578999999999999999975
No 91
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=91.89 E-value=1.1 Score=43.95 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=74.2
Q ss_pred ceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCC
Q 004608 198 PAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDG 277 (742)
Q Consensus 198 ~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dG 277 (742)
+.+.....|..+|+++|+++.|++ .+++.-+.|..++++++ +++.-+--.... .. .++ --|..... .. ++
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~-~YP~FlP~C~~s~v~~~-~~~~l~A~l~V~---~k-~i~-e~F~Trv~-~~--~~ 71 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVE-SYPEFLPWCSASRVLER-NERELIAELDVG---FK-GIR-ETFTTRVT-LK--PT 71 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHH-hCchhccccccceEecc-CcceeEEEEEEE---hh-hee-eeeeeeee-ec--Cc
Confidence 346677889999999999999999 79999999999999986 443311111110 00 000 01222211 11 22
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 004608 278 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 334 (742)
Q Consensus 278 syvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~ 334 (742)
.-.|....++-|- | .+.|+|-+.|+++. .|+|...+.-+.+.-+-.
T Consensus 72 ~~~I~~~l~~GPF--------k--~L~~~W~F~pl~~~-~ckV~f~ldfeF~s~ll~ 117 (146)
T COG2867 72 ARSIDMKLIDGPF--------K--YLKGGWQFTPLSED-ACKVEFFLDFEFKSRLLG 117 (146)
T ss_pred hhhhhhhhhcCCh--------h--hhcCceEEEECCCC-ceEEEEEEEeeehhHHHH
Confidence 2245554443331 1 45789999999654 899999999999887653
No 92
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=91.21 E-value=7.8 Score=35.65 Aligned_cols=137 Identities=9% Similarity=-0.031 Sum_probs=67.7
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCcE
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 279 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGsy 279 (742)
+....+|++|+++||++|.|.+ .-+.|.+.....++- ...+.+ ..+.... .......... +..... .+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~~~~~~~~-~~~Gg~-~~~~~~~----~~g~~~~~~~--~i~~~~-~~~- 70 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPE-LLAQWFGPTTTAEMD-LRVGGR-WFFFMTG----PDGEEGWVSG--EVLEVE-PPR- 70 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHH-HHHhhhCcCCceEEc-ccCCce-EEEEEEC----CCCCEEeccE--EEEEEc-CCC-
Confidence 4567789999999999999998 689998752222222 122222 2222221 1111111111 122222 222
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004608 280 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 359 (742)
Q Consensus 280 vI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~~~~~~~~i~~~mL~~va~LRe~~~ 359 (742)
.+..+....+. |+ ... ....|.++|.++ .|+|++....-+.+- +. ..+...+...+-..++.||++++
T Consensus 71 ~i~~~~~~~~~-~~---~~~---~~~~~~~~~~~~--~T~v~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 71 RLVFTWAFSDE-TP---GPE---TTVTVTLEETGG--GTRLTLTHSGFPEED-AE--QEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred eEEEEecccCC-CC---CCc---eEEEEEEEECCC--CEEEEEEEEccChHh-HH--HHHHhCHhhHHHHHHHHHHHHhh
Confidence 23333222111 11 122 244788999984 599999887655431 00 11222222223345567887764
No 93
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=89.87 E-value=12 Score=36.11 Aligned_cols=119 Identities=11% Similarity=-0.016 Sum_probs=73.6
Q ss_pred EEEEEEecCcHHHHHHHHHhCCC-CccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCCc
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 278 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~-~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGs 278 (742)
+..+..|++|++++++++.+... ....|-+.+.++++++-=++--.|-...+.+ .. +.-.+.-..-..++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~----~~---~~~~~kE~l~~~D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP----GG---KVKYVKERIDAVDEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC----CC---cceEEEEEEEEEcccc
Confidence 56778899999999999999873 3577999999999886322223455555532 22 1122222222224445
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCC
Q 004608 279 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCW 331 (742)
Q Consensus 279 yvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGW 331 (742)
..+.++-++-+... . .-....+.+.+.|.+++ .|.|.|....++.+-
T Consensus 76 ~~~~y~vveg~~~~--~---~~~~y~~t~~v~~~~~~-~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDVLK--D---GYKSYKVEIKFVPKGDG-GCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEeccccc--C---ceEEEEEEEEEEECCCC-CEEEEEEEEEEECCC
Confidence 55655555332111 0 12344667789998554 899999999997654
No 94
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.83 E-value=7.7 Score=36.53 Aligned_cols=108 Identities=9% Similarity=0.025 Sum_probs=64.6
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCce---EEEEEEEccCCCCCCCCCceEEEEEEEEEccCCc
Q 004608 202 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT---DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 278 (742)
Q Consensus 202 a~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~t---dIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dGs 278 (742)
.+..|++|+++||+++.|.+ ....|.+.+.+++++..-++.. ..+....+. + +.. +.........+.+.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~-~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~--~--~~~---~~w~~~it~~~p~~ 74 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPD-NLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH--F--GIP---QRWTTEITEVEPPR 74 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcc-hHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe--c--CCc---eEEEEEEEEEcCCC
Confidence 45679999999999999999 7999999999999886332221 234444432 1 221 21111111112344
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 004608 279 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 330 (742)
Q Consensus 279 yvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkG 330 (742)
+ +...++. |-++ .....+.++|.++ .|.||+.+..++.|
T Consensus 75 ~-f~~~~~~--------G~~~--~w~h~~~f~~~~~--gT~vt~~v~~~~p~ 113 (137)
T cd07820 75 R-FVDEQVS--------GPFR--SWRHTHRFEAIGG--GTLMTDRVEYRLPL 113 (137)
T ss_pred e-EEEEecc--------CCch--hCEEEEEEEECCC--ceEEEEEEEEeCCc
Confidence 3 3333441 1111 1223567889875 59999999999843
No 95
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=89.67 E-value=0.076 Score=56.14 Aligned_cols=156 Identities=10% Similarity=-0.071 Sum_probs=101.1
Q ss_pred CEEEEecCCcEEecccCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCC
Q 004608 176 WTIFGCQNEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDW 255 (742)
Q Consensus 176 WkLv~~kneI~~~~~~~~~s~~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~ 255 (742)
|.+.+....+..+....+...+...++..+..-........+.-+. .+..|+..-.-...++.+..++++....+.. +
T Consensus 27 ~s~~k~~~~v~~~~~a~~~~~~~i~~v~~~~~lf~~~~~~~i~~~~-~i~~~~~g~~v~~~~~~~~~~~~~~~s~~~~-~ 104 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEKPKGNISRVRRFFCLFVTEDLVFISLLW-LIELLQNGPEVYNMLEKIQKNTDIWTSEFDS-F 104 (241)
T ss_pred HHHHhhcceeEEeccCCcCcCCcccccceeeccccccchheeecch-hhHHHhccchHHHHHHHHHhheeeeeEecHh-h
Confidence 5565555666666555554555555666655544333333333222 2334444334455667777888877776653 3
Q ss_pred CCCCCCCceEEEEEEEEEccCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCC-eeEEEEEEeeeCCCCcc
Q 004608 256 LPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGK-KSVVKHMLAIDWKCWRS 333 (742)
Q Consensus 256 ~P~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~-~~~Vtyi~qvDpkGWip 333 (742)
....+++|+|+...+..+...+......++++++.+++...++|+..+.+|++..|++... .+.-.-..+.|.+|-.+
T Consensus 105 ~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~~~~~~~~~~~d~rg~~~ 183 (241)
T KOG3845|consen 105 NVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIEPFILAWLREWFLDLRGLPQ 183 (241)
T ss_pred hhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCcchhHHHHHHHHhhcccCCC
Confidence 4456899999999999988777667778889999999999999999999999999996431 11122233455555444
No 96
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.19 E-value=2.2 Score=40.90 Aligned_cols=100 Identities=23% Similarity=0.277 Sum_probs=61.9
Q ss_pred eeeeEEEeeeccc----c-cccccceeeeeecceeeeccccCCCCCCccceeeeeccceEEecCCccee---------eC
Q 004608 12 MEGWLHLIRSNRI----G-LQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESI---------HR 77 (742)
Q Consensus 12 ~egWm~~~~~~~l----g-~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~---------~~ 77 (742)
-.|++..+.-++. + +.-.+.|||+|=...|=|=|++.... --|+--.--..+.|++..-..+ ..
T Consensus 5 K~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~--f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~ 82 (125)
T cd01221 5 KRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGST--FVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGR 82 (125)
T ss_pred EEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCe--EEEEeeccccceEEeecccccccccccccccCC
Confidence 4688888743322 2 22245689999999887777654221 1111111125666775332222 34
Q ss_pred ceEEEEEEe-CCCCCCcceeeccCCHHHHHHHHHHHH
Q 004608 78 KVFFIFTLY-NTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (742)
Q Consensus 78 ~~~~v~~~y-n~~~~~~~~~~~~~~~eea~~w~~a~~ 113 (742)
.-+|..++. |..++...+.+.|.|.+|-.+||+|++
T Consensus 83 ~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 83 PNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 555655544 556778888899999999999999985
No 97
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.07 E-value=3.4 Score=38.87 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=61.8
Q ss_pred eeeeeEEEeeecccccccccceeeeeecceeeeccccCCC---CC---Cccceeeeec-cceEEecCCcceeeCceEEEE
Q 004608 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS---KN---EDPVRSAIID-SCIRVTDNGRESIHRKVFFIF 83 (742)
Q Consensus 11 ~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~---~~---~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~ 83 (742)
.+||=|-.+++.+ .-++.|||+|=+..|=+=|++... .| ..---++.++ ..+.|.|..=. ...-..|
T Consensus 5 I~EG~L~ki~~~~---~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~---~~~knaF 78 (112)
T cd01261 5 IMEGTLTRVGPSK---KAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDS---SEYKNAF 78 (112)
T ss_pred cccCcEEEEeccc---CCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCC---cccCceE
Confidence 3788887776544 334689999999988776744321 01 0122233333 34555542210 1123356
Q ss_pred EEeCCCCCCcceeeccCCHHHHHHHHHHHHHHHHc
Q 004608 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 84 ~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~~~ 118 (742)
.|.++. ...+.+-|.|+||-.+||++|..|+.+
T Consensus 79 ~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 79 EIILKD--GNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred EEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 666553 346889999999999999999999875
No 98
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.43 E-value=2.1 Score=40.45 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=59.5
Q ss_pred ccceeeeeecceeeeccccCCC--CCCccceeeeeccceEEecCCccee---eCceEEEEEEeCCCCCCcceeeccCCHH
Q 004608 29 SRKRYFLLEDHFLKSFKSVPHS--KNEDPVRSAIIDSCIRVTDNGRESI---HRKVFFIFTLYNTSNHNDQLKLGASSPE 103 (742)
Q Consensus 29 ~~~ry~vl~~~~~~~yKr~P~~--~~~~pi~~~ii~~~~rVed~Gr~~~---~~~~~~v~~~yn~~~~~~~~~~~~~~~e 103 (742)
++-||.+|=++.|=.=|+.-.. .++--.|.++.=..++|+++..... ..+--|.|-+-.+.+ ...+++-|.|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~-~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQG-KTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCC-CccEEEEeCCHH
Confidence 6789999999999888844222 1133345555556777777532221 123445555555543 456899999999
Q ss_pred HHHHHHHHHHHHHH
Q 004608 104 EAAKWIHSLQEAAL 117 (742)
Q Consensus 104 ea~~w~~a~~~a~~ 117 (742)
+-.+||++|+-|+.
T Consensus 99 ~K~kWm~al~~a~s 112 (116)
T cd01223 99 LRKKWLKALEMAMS 112 (116)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999975
No 99
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=87.59 E-value=11 Score=38.36 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=88.1
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEc----c
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE----D 275 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~----~ 275 (742)
.....+|+.|+++|+.+..|++ ..+.|.+++.+.+|+ |++- -+...+ .| .-....|... .
T Consensus 72 v~~~V~I~kPae~vy~~W~dLe-~lP~~Mkhl~SVkVl---ddkr--SrW~~~---ap-------~g~~v~Wea~it~d~ 135 (217)
T COG5637 72 VEVQVTIDKPAEQVYAYWRDLE-NLPLWMKHLDSVKVL---DDKR--SRWKAN---AP-------LGLEVEWEAEITKDI 135 (217)
T ss_pred EEEEEEeCChHHHHHHHHHhhh-hhhHHHHhhceeecc---CCCc--cceeEc---CC-------CCceEEEeehhhccC
Confidence 3445678999999999999999 799999999987776 4443 233332 22 1222344432 2
Q ss_pred CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc-c-cccchhhHHHHHHHHHHH
Q 004608 276 DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY-L-QPSSARSITIRMLGRVAA 353 (742)
Q Consensus 276 dGsyvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~-~-~~~~~~~i~~~mL~~va~ 353 (742)
.| -.|...|++-..+ +..|.|| +.+..+. +|.|...+.-.|-||.-. . ...|+..--.++-.-+..
T Consensus 136 ~~-e~I~W~Sl~Ga~v-~NsG~Vr---------F~~~pg~-~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~R 203 (217)
T COG5637 136 PG-ERIQWESLPGARV-ENSGAVR---------FYDAPGD-STEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLER 203 (217)
T ss_pred CC-cEEeeecCCCCcC-CCCccEE---------eeeCCCC-ceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHH
Confidence 23 4678888865444 4568888 6666543 688888888888777653 2 223444444555667788
Q ss_pred HHHHHHhc
Q 004608 354 LRELFRAK 361 (742)
Q Consensus 354 LRe~~~~~ 361 (742)
+|+++..-
T Consensus 204 Fk~~~e~~ 211 (217)
T COG5637 204 FKEYQENG 211 (217)
T ss_pred HHHHHHcc
Confidence 88888763
No 100
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.48 E-value=0.95 Score=49.83 Aligned_cols=97 Identities=28% Similarity=0.441 Sum_probs=62.4
Q ss_pred ceeeeeEEEeeecccccccccceeeeeec-ceeeeccccCCCCC--Cccceeeee-ccceEEecCCcceeeCceEEEEEE
Q 004608 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLED-HFLKSFKSVPHSKN--EDPVRSAII-DSCIRVTDNGRESIHRKVFFIFTL 85 (742)
Q Consensus 10 ~~~egWm~~~~~~~lg~~~~~~ry~vl~~-~~~~~yKr~P~~~~--~~pi~~~ii-~~~~rVed~Gr~~~~~~~~~v~~~ 85 (742)
++.|||+-.-|- -=+.+ |.|||+|.. -.+==||.+|.+.. ..|+-+-.| ++-+|-.|+-|- .+|.|=++
T Consensus 15 vvkEgWlhKrGE--~IknW-RpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrP----ntFiiRcL 87 (516)
T KOG0690|consen 15 VVKEGWLHKRGE--HIKNW-RPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRP----NTFIIRCL 87 (516)
T ss_pred hHHhhhHhhcch--hhhcc-cceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhccCCCC----ceEEEEee
Confidence 448999976332 12334 899999963 23446899998753 466666655 455666654432 24444333
Q ss_pred eCCCCCCccee--eccCCHHHHHHHHHHHHHHHH
Q 004608 86 YNTSNHNDQLK--LGASSPEEAAKWIHSLQEAAL 117 (742)
Q Consensus 86 yn~~~~~~~~~--~~~~~~eea~~w~~a~~~a~~ 117 (742)
-= .-.++ +.+.|++|...|++|++.++.
T Consensus 88 QW----TTVIERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 88 QW----TTVIERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred ee----eeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence 21 12233 779999999999999998865
No 101
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.07 E-value=5.6 Score=37.91 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=66.2
Q ss_pred ceeeeeEEEeeecccccccccceeeeeecceeeeccccCC---CCCCccceeeee-ccceEEecCCc----ceeeCceEE
Q 004608 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPH---SKNEDPVRSAII-DSCIRVTDNGR----ESIHRKVFF 81 (742)
Q Consensus 10 ~~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~---~~~~~pi~~~ii-~~~~rVed~Gr----~~~~~~~~~ 81 (742)
+.|||||-.=..++..+.+ ..+|.|+.+.-+-.|-..+. .+...|....-+ |...-|-.-+. ..-....-|
T Consensus 2 t~~EGwvkvP~~~~~krGW-~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKGW-QRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCcccCc-eEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 4699999765555666767 67899999999999983332 122344333333 33333322111 111234557
Q ss_pred EEEEeC----CCCCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 82 IFTLYN----TSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 82 v~~~yn----~~~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
||+|-- .-.....+-|=|.|-.|-.||..++++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 888754 3333455668889999999999999986
No 102
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=85.53 E-value=5.1 Score=36.71 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=54.5
Q ss_pred ccceeeeeecceeeeccccCCCCCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCCCCCcceeeccCCHHHHHHH
Q 004608 29 SRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKW 108 (742)
Q Consensus 29 ~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~w 108 (742)
.+-||++|=.+.+=+=|+... .-=.|+-|.=.+++|.++=. ..-.-|.|........++.+-|.|.|+-+.|
T Consensus 16 ~~eR~vFLFe~~ll~~K~~~~---~y~~K~~i~~~~l~i~e~~~-----~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W 87 (97)
T cd01222 16 GKPRLLFLFQTMLLIAKPRGD---KYQFKAYIPCKNLMLVEHLP-----GEPLCFRVIPFDDPKGALQLTARNREEKRIW 87 (97)
T ss_pred CCceEEEEecccEEEEEecCC---eeEEEEEEEecceEEecCCC-----CCCcEEEEEecCCCceEEEEEecCHHHHHHH
Confidence 456999998888877674332 22334444346777776321 1235555554444446899999999999999
Q ss_pred HHHHHHHHH
Q 004608 109 IHSLQEAAL 117 (742)
Q Consensus 109 ~~a~~~a~~ 117 (742)
+++|++|+.
T Consensus 88 ~~~i~~~i~ 96 (97)
T cd01222 88 TQQLKRAML 96 (97)
T ss_pred HHHHHHHhh
Confidence 999999975
No 103
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.60 E-value=4.8 Score=37.91 Aligned_cols=102 Identities=20% Similarity=0.241 Sum_probs=69.9
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeee-ccceEEecCCcceeeCceEEEEEE-eCCC
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAII-DSCIRVTDNGRESIHRKVFFIFTL-YNTS 89 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii-~~~~rVed~Gr~~~~~~~~~v~~~-yn~~ 89 (742)
+|||||. ..-|+.==.+|||||+..=|.|+-.+-+...-.+..=+.. +.+|=..-.|++.+..-.=|-|.+ .++.
T Consensus 2 ~~g~Lyl---K~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYL---KADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEE---ccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 6899997 2335554588999999999987765543322122222222 355555557888888888898888 4443
Q ss_pred CC--Cccee-eccCCHHHHHHHHHHHHHHH
Q 004608 90 NH--NDQLK-LGASSPEEAAKWIHSLQEAA 116 (742)
Q Consensus 90 ~~--~~~~~-~~~~~~eea~~w~~a~~~a~ 116 (742)
.. ++-++ |-|.+.+--..|+.||+-|.
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 22 57777 77888888899999999874
No 104
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=81.25 E-value=24 Score=34.81 Aligned_cols=115 Identities=14% Similarity=0.024 Sum_probs=65.4
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEE-c-cCC
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRR-E-DDG 277 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr-~-~dG 277 (742)
|.++-.|.+||++|+++|.|++ +--.++.-++-+++.++. --....++ . .+++ ..|-.-..... + +..
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe----~~a~ciPG~qs~e~~g~e-~~~~v~l~---i-g~l~-~~~~g~~~~~~v~~~~~ 72 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPE----QVAACIPGVQSVETNGDE-YTAKVKLK---I-GPLK-GTFSGRVRFVNVDEPPR 72 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHH----HHHhhcCCcceeeecCCe-EEEEEEEe---e-ccee-EEEEEEEEEccccCCCc
Confidence 4556679999999999999887 444566777778877763 33444443 1 3455 23322211111 1 223
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc
Q 004608 278 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL 335 (742)
Q Consensus 278 syvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~~ 335 (742)
+|.|-...- |--..........+.|.+.+ |+|+|..+.|.+|-+-++
T Consensus 73 ~~~i~g~G~---------~~~g~~~~~~~v~l~~~g~g--t~v~w~~~~~~gg~laql 119 (146)
T COG3427 73 SITINGSGG---------GAAGFADGTVDVQLEPSGEG--TRVNWFADANVGGKLAQL 119 (146)
T ss_pred EEEEEeecc---------cccceeeeeeEEEEEEcCCC--cEEEEEEEccccHHHHHH
Confidence 344433220 00000111124456666654 999999999999987654
No 105
>PF15408 PH_7: Pleckstrin homology domain
Probab=81.09 E-value=1.1 Score=40.11 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=57.3
Q ss_pred eeeEEEeeecccccccccceeeeeecceeeeccccC-CCCCCccceeeeeccceEEecCCcceeeC--ceEEEEEEeCCC
Q 004608 13 EGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVP-HSKNEDPVRSAIIDSCIRVTDNGRESIHR--KVFFIFTLYNTS 89 (742)
Q Consensus 13 egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P-~~~~~~pi~~~ii~~~~rVed~Gr~~~~~--~~~~v~~~yn~~ 89 (742)
||.+|+...+.| ++||.||.||.+-||-.+. ..-..--+++-++. +-+| +|-+-..| =+-|-|-.|...
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s-~Pm~--~~~~A~~N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVS-HPMV--NFSQAVPNLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhh-cccc--cccccCCCCCeeEEEEEEecCC
Confidence 799999877666 7899999999999998332 22112223333332 1122 23333333 233455556655
Q ss_pred CCCcceeeccCCHHHHHHHHHHHHH
Q 004608 90 NHNDQLKLGASSPEEAAKWIHSLQE 114 (742)
Q Consensus 90 ~~~~~~~~~~~~~eea~~w~~a~~~ 114 (742)
. .++++=|.|++--.+|+.++-.
T Consensus 73 ~--~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 73 R--RHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred c--chhhhhhhHHHHHHHHHHHhcC
Confidence 4 5666668999999999988753
No 106
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=80.41 E-value=12 Score=35.29 Aligned_cols=102 Identities=25% Similarity=0.433 Sum_probs=60.1
Q ss_pred eeeeeEEEeeeccc--ccccccceeeeeecceeeeccccCCCCCCccceeeeec--cceE---EecCC-cceeeCceEEE
Q 004608 11 RMEGWLHLIRSNRI--GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIID--SCIR---VTDNG-RESIHRKVFFI 82 (742)
Q Consensus 11 ~~egWm~~~~~~~l--g~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~--~~~r---Ved~G-r~~~~~~~~~v 82 (742)
.|||||-.=..+.. .+.+ ..+|.|+.+.-+-.|-......+..|. .++| .-+- |.+-- ...-....-+|
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW-~r~yvVv~~~Kl~lYd~e~~~~~~~p~--~vldl~~~fhv~~V~asDVi~a~~kDiP~I 77 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGW-KKQYVVVSSRKILFYNDEQDKENSTPS--MILDIDKLFHVRPVTQGDVYRADAKEIPKI 77 (112)
T ss_pred CcceeEEccCCCCccccCCc-eEEEEEEeCCEEEEEecCccccCCCcE--EEEEccceeeeecccHHHeeecCcccCCeE
Confidence 48999976433333 2345 667999999999999833322112232 2233 1000 11100 00112334588
Q ss_pred EEEeCCCCCCcceeeccCCHHHHHHHHHHHHHHH
Q 004608 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (742)
Q Consensus 83 ~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~ 116 (742)
|.|--. +++..+-|=|.|-+|-.||..++..-|
T Consensus 78 F~I~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 78 FQILYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EEEEeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 888664 446777788889999999999997654
No 107
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=79.27 E-value=2.3 Score=50.65 Aligned_cols=97 Identities=27% Similarity=0.351 Sum_probs=69.0
Q ss_pred eeeeEEEe--eecccccccccceeeeeecceeeeccccCCCCCCccceeeeeccceE-EecCCcceeeCceEEEEEEeCC
Q 004608 12 MEGWLHLI--RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR-VTDNGRESIHRKVFFIFTLYNT 88 (742)
Q Consensus 12 ~egWm~~~--~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~r-Ved~Gr~~~~~~~~~v~~~yn~ 88 (742)
-||-|++. |+-++|..++-+|||-|-+..|.|=| .|+. .|+-+..+ .|+| ||..--+++.++.+|- -||+.
T Consensus 567 k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~K-sp~~---q~~~~Ipl-~nI~avEklee~sF~~knv~q-VV~~d 640 (800)
T KOG2059|consen 567 KEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAK-SPGK---QPIYTIPL-SNIRAVEKLEEKSFKMKNVFQ-VVHTD 640 (800)
T ss_pred cccceEeccccccchhhhhhhheEEEeccceeEEec-CCcc---CcccceeH-HHHHHHHHhhhhccCCCceEE-EEecC
Confidence 89999999 88999988889999999999998877 3332 23222222 2333 4434445566665542 13443
Q ss_pred CCCCcceeeccCCHHHHHHHHHHHHHHHHc
Q 004608 89 SNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 89 ~~~~~~~~~~~~~~eea~~w~~a~~~a~~~ 118 (742)
+++-+-|.+.-||..|+.+++.+...
T Consensus 641 ----rtly~Q~~n~vEandWldaL~kvs~~ 666 (800)
T KOG2059|consen 641 ----RTLYVQAKNCVEANDWLDALRKVSCC 666 (800)
T ss_pred ----cceeEecCCchHHHHHHHHHHHHhcc
Confidence 47789999999999999999998653
No 108
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=78.67 E-value=8.8 Score=35.73 Aligned_cols=95 Identities=16% Similarity=0.262 Sum_probs=57.9
Q ss_pred eeeeEEEeeecccccccccceeeeee--cceeeeccccCCC----CC--CccceeeeeccceEEecCCcceeeCceEEEE
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLE--DHFLKSFKSVPHS----KN--EDPVRSAIIDSCIRVTDNGRESIHRKVFFIF 83 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~--~~~~~~yKr~P~~----~~--~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~ 83 (742)
++||||.-..+.+|-++- +.|+... ++...|---.+.+ .+ ..+.+=++-.+..|-.|.--+ =|-|
T Consensus 1 k~GYLy~~~k~~~~~~Wv-k~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~dR------RFCF 73 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWT-KYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESIDK------RFCF 73 (104)
T ss_pred CCceEEEEcCCCCCCeEE-EEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCccc------eeeE
Confidence 689999987788888885 4344433 3455554433322 11 122233333344554443211 2677
Q ss_pred EEeCCCCCCcceeeccCCHHHHHHHHHHHHH
Q 004608 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (742)
Q Consensus 84 ~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~ 114 (742)
.|-.+.-+ ..+.+-|.|.++-..||+|+.+
T Consensus 74 ei~~~~~~-~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 74 DVEVEEKP-GVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred eeeecCCC-CeEEEEecCHHHHHHHHHhhcC
Confidence 77666554 6688999999999999999864
No 109
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=74.53 E-value=51 Score=31.94 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=29.1
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004608 197 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF 229 (742)
Q Consensus 197 ~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~ 229 (742)
...+....+|++|+++|+++|.|.+ ...+|..
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~ 41 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPE-RLARWFA 41 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHH-HHHhhcC
Confidence 3678999999999999999999998 7999988
No 110
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=73.20 E-value=7.1 Score=44.86 Aligned_cols=97 Identities=21% Similarity=0.316 Sum_probs=60.5
Q ss_pred cccceeeeeEEEeeecccccccccceeeeeecceeeecc-ccCCCCCCccceeee--eccceEE-e--cCCcceeeCceE
Q 004608 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFK-SVPHSKNEDPVRSAI--IDSCIRV-T--DNGRESIHRKVF 80 (742)
Q Consensus 7 ~~~~~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yK-r~P~~~~~~pi~~~i--i~~~~rV-e--d~Gr~~~~~~~~ 80 (742)
++...++||++.++... . -..|||.|.+..+.+.. .+|...+..|=...+ |...+=| + ... .=
T Consensus 374 ~sDv~~~G~l~k~~~~~---~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~-------~~ 442 (478)
T PTZ00267 374 TSDVTHGGYLYKYSSDM---R-WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQK-------HP 442 (478)
T ss_pred cCCcccceEEeccCCCc---c-hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCC-------CC
Confidence 34566999999987643 3 48899999988877754 566543333322222 3223322 1 121 13
Q ss_pred EEEEEeCCCCCCcceeeccCCHHHHHHHHHHHHHHH
Q 004608 81 FIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (742)
Q Consensus 81 ~v~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~ 116 (742)
++|.+..+.++ ++=+.|.|.+|...||++++.|+
T Consensus 443 ~~~~i~~~~~~--~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 443 NQLVLWFNNGQ--KIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred ceEEEEecCCc--EEEEecCChHHHHHHHHHHHHHh
Confidence 34555444433 55577799999999999999984
No 111
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=71.45 E-value=9.4 Score=35.76 Aligned_cols=101 Identities=18% Similarity=0.259 Sum_probs=62.8
Q ss_pred eeeEEEe-eecccccccccceeeeeecceeeeccccCCCCC--Cccceeeee-ccceEEecCCccee-eCceEEEEEEeC
Q 004608 13 EGWLHLI-RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN--EDPVRSAII-DSCIRVTDNGRESI-HRKVFFIFTLYN 87 (742)
Q Consensus 13 egWm~~~-~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~--~~pi~~~ii-~~~~rVed~Gr~~~-~~~~~~v~~~yn 87 (742)
=|||--- .-+..+.+--+.||++|.|+.+-.|+.-|.+.. .+|.++--+ +.-+||--.|...- +.+.=+.|.+--
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 3787543 223444455589999999999999999998653 366555433 45556543222111 222335555543
Q ss_pred CCCCCcceeeccCCHHHHHHHHHHHHH
Q 004608 88 TSNHNDQLKLGASSPEEAAKWIHSLQE 114 (742)
Q Consensus 88 ~~~~~~~~~~~~~~~eea~~w~~a~~~ 114 (742)
-.. =..-.|...+..|-+.|.+||.+
T Consensus 82 g~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 GTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 333 12223789999999999999875
No 112
>PLN02866 phospholipase D
Probab=63.49 E-value=21 Score=44.99 Aligned_cols=81 Identities=21% Similarity=0.422 Sum_probs=55.7
Q ss_pred cceeeeeecceeeeccccCCCCCCccceeeeecc----------ceEEecCCcceeeCceEEEEEEeCCCCCCcceeecc
Q 004608 30 RKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS----------CIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGA 99 (742)
Q Consensus 30 ~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~~----------~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~ 99 (742)
.+|||||+..+|.|.+ +|.+. .|..=.++|. .+.+.....++ +..=|.|+|-| -++++.|.|
T Consensus 219 ~k~w~v~k~~~l~~~~-~p~~~--~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~~ 290 (1068)
T PLN02866 219 QKVWAVLKPGFLALLE-DPFDA--KPLDIIVFDVLPASNGNGEGQISLAKEIKER--NPLRFGFKVTC---GNRSIRLRT 290 (1068)
T ss_pred heeEEEEeccEEEEEe-cCCCC--ceeEEEEEecccccccCCCcceeeccccccc--CCCcceEEEec---CceEEEEEE
Confidence 4699999999997765 56553 4555556662 33333322222 23344666644 367799999
Q ss_pred CCHHHHHHHHHHHHHHHHc
Q 004608 100 SSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 100 ~~~eea~~w~~a~~~a~~~ 118 (742)
.|..++..|+.++++|..+
T Consensus 291 ~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 291 KSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999765
No 113
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=62.94 E-value=13 Score=34.73 Aligned_cols=99 Identities=19% Similarity=0.302 Sum_probs=57.6
Q ss_pred eeeeEEEeeecccccccccceeeeeecce-----eeeccccCCCCCC-ccceeeeeccceEEec---CCcceeeCceEEE
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHF-----LKSFKSVPHSKNE-DPVRSAIIDSCIRVTD---NGRESIHRKVFFI 82 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~-----~~~yKr~P~~~~~-~pi~~~ii~~~~rVed---~Gr~~~~~~~~~v 82 (742)
++|||+..|.+..= .+ .+|||||.+-+ +..|+.+-+++.| .-+-.-.||=+=-... -|.+-. |+.+|
T Consensus 4 ~sGyL~k~Gg~~~K-kW-KKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~-gg~~f- 79 (117)
T cd01234 4 HCGYLYAIGKNVWK-KW-KKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQ-GGRHF- 79 (117)
T ss_pred eeEEEEeccchhhh-hh-heeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccc-cchhh-
Confidence 79999998765442 34 79999999754 2345433333211 1112222221100000 112222 33332
Q ss_pred EEEeCCCCCCcceeeccCCHHHHHHHHHHHHHHHH
Q 004608 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (742)
Q Consensus 83 ~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~~ 117 (742)
+|-.-+.+.+.+|+....|---|+.|+=.|--
T Consensus 80 ---f~avkegd~~~fa~~de~~r~lwvqa~yratg 111 (117)
T cd01234 80 ---FNAVKEGDELKFATDDENERHLWVQAMYRATG 111 (117)
T ss_pred ---hheeccCcEEEEeccchHHHHHHHHHHHHHcC
Confidence 45566788999999999999999999998843
No 114
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=56.71 E-value=83 Score=29.73 Aligned_cols=79 Identities=16% Similarity=0.307 Sum_probs=55.8
Q ss_pred cccccceeeeeecceeeeccccCCC-----CCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCCCCCcceeeccC
Q 004608 26 LQYSRKRYFLLEDHFLKSFKSVPHS-----KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGAS 100 (742)
Q Consensus 26 ~~~~~~ry~vl~~~~~~~yKr~P~~-----~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~ 100 (742)
-+=-+.|||||=...|-|....|.. .|..|++.+.|+.=...| .+ -+.|.|--+. -+++.+-|.
T Consensus 25 ~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e------~~---~~aFeI~G~l--i~~i~v~C~ 93 (111)
T cd01225 25 GEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTE------AL---KNAFEISGPL--IERIVVVCN 93 (111)
T ss_pred ccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhcc------Cc---cceEEEeccC--cCcEEEEeC
Confidence 3345899999999999999998854 457888777776322122 12 3344444333 367778899
Q ss_pred CHHHHHHHHHHHHHH
Q 004608 101 SPEEAAKWIHSLQEA 115 (742)
Q Consensus 101 ~~eea~~w~~a~~~a 115 (742)
+.+|..+|++-++.-
T Consensus 94 ~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 94 NPQDAQEWVELLNAN 108 (111)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988763
No 115
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=54.24 E-value=2.3e+02 Score=29.71 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=78.3
Q ss_pred ceEEEEEEecC--cHHHHHHHHHhCCCCccccccccceeEEEEecCCceEEEEEEEccCCCCCCCCCceEEEE-EEEEEc
Q 004608 198 PAIMAVGVVDG--TSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWRRE 274 (742)
Q Consensus 198 ~~~Ka~~vV~a--spe~VfevL~D~d~~R~eWD~~~~e~~vVE~iD~~tdIvY~~~~~~~~P~pvs~RDFV~l-R~wrr~ 274 (742)
.+-|....|.- .-.+|...|+|.+ .-...|..+..++++...+++.-++.++.+. +..+.+-+.+. ..--..
T Consensus 59 dI~K~~~~I~~pnkYneIIN~LWdpn-~~~~fn~~~ikgki~RvYnpNLvmiqqry~~----~~~~~~~YfyaLa~Kv~i 133 (208)
T TIGR01599 59 IIGKIHLTIQDPNKYDAIIKTLWDFN-DNKKFGRKFIKGKVVRVYSPNLIMIQQRYKD----ASGSPNKYFYALATKVKV 133 (208)
T ss_pred EEEEEEEEecCchhHHHHHHHHhccc-cccCCCchheeeeEEEEeCCCeEEEEeecCC----CCCCcceEEeEeeeeeec
Confidence 35566666744 3589999999999 6788999999999999999999889888864 22333333333 332222
Q ss_pred cCCcEEEEEEecCCCCCCC-C-CC--------------------------eEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004608 275 DDGTYVILYHSVFHKKCPR-Q-KG--------------------------SVRACLKSGGYVITPMNHGKKSVVKHM 323 (742)
Q Consensus 275 ~dGsyvI~~~SV~hp~~Pp-~-~G--------------------------~VRaei~~gGwvI~Pl~~~~~~~Vtyi 323 (742)
.+.+-+|++.|..-.+.-+ . +. .-...+..+||+|+.-++ ...|||+
T Consensus 134 Sed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d--~v~iTyi 208 (208)
T TIGR01599 134 SEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD--NIDITYV 208 (208)
T ss_pred CCCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC--cEEEEEC
Confidence 4556777888865332211 1 11 233456678888888654 4677774
No 116
>PLN02647 acyl-CoA thioesterase
Probab=49.36 E-value=35 Score=39.47 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=50.8
Q ss_pred ceeeecc-ccCCCCCCccceeeeec---------------cceEEec--CCcceeeCceEEEEEEeCC--CCCCccee-e
Q 004608 39 HFLKSFK-SVPHSKNEDPVRSAIID---------------SCIRVTD--NGRESIHRKVFFIFTLYNT--SNHNDQLK-L 97 (742)
Q Consensus 39 ~~~~~yK-r~P~~~~~~pi~~~ii~---------------~~~rVed--~Gr~~~~~~~~~v~~~yn~--~~~~~~~~-~ 97 (742)
..++-.. ..|...|+....++-|. +.+.|++ .|-+.+.+..+|+|.+.+. .+++.+++ +
T Consensus 336 ~svd~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~~~~g~p~~Vp~V 415 (437)
T PLN02647 336 LEVDHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPEAAMKNGFKIRNV 415 (437)
T ss_pred EEecceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEeccccCCCCccCCee
Confidence 3444444 56999887776555432 2333444 3445678899999999886 55677776 9
Q ss_pred ccCCHHHHHHHHHHH
Q 004608 98 GASSPEEAAKWIHSL 112 (742)
Q Consensus 98 ~~~~~eea~~w~~a~ 112 (742)
-+.|-+|++++.+.+
T Consensus 416 ~P~T~eE~~~~~e~~ 430 (437)
T PLN02647 416 VPATEEEARRILERM 430 (437)
T ss_pred ecCCHHHHHHHHHhc
Confidence 999999999955544
No 117
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=48.25 E-value=1.5e+02 Score=27.93 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=63.7
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEE--EecCCceEEEEEEEccCCCCCCCCCceEEEEEEEEEccCC
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVV--EHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDG 277 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~~e~~vV--E~iD~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~dG 277 (742)
||....+++|++.+|+.|.+.- .-|-.-...+.+ .+|.+ .-|... .+.+--+.+.-.....+.
T Consensus 1 MkI~~~l~v~a~~ff~~l~~s~----~~DI~~~tgk~~~~~~L~G---~~Y~K~--------~~~~~~~~v~It~~~~~~ 65 (120)
T PF11687_consen 1 MKISKTLNVSAEEFFDYLIDSL----LYDIKQATGKKLPVKQLKG---FSYQKK--------FKNKREAKVKITEYEPNK 65 (120)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----HHHHHHHcCCCCChhhcCC---cEEEEE--------cCCCCEEEEEEEEEcCCC
Confidence 5677889999999999998532 333222222222 33422 223322 122224444433333455
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 004608 278 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 334 (742)
Q Consensus 278 syvI~~~SV~hp~~Pp~~G~VRaei~~gGwvI~Pl~~~~~~~Vtyi~qvDpkGWip~ 334 (742)
.|.+...|-. | ...-.|.|+|++++ .|.|+|-=.....++...
T Consensus 66 ~Y~~~~~s~~--------~-----~~~i~Y~i~~~~~~-~~~v~y~E~~~~~~~~~~ 108 (120)
T PF11687_consen 66 RYAATFSSSR--------G-----TFTISYEIEPLDDG-SIEVTYEEEYESKGFFQK 108 (120)
T ss_pred EEEEEEEecC--------C-----CEEEEEEEEECCCC-cEEEEEEEEEccCCHHHH
Confidence 6777776651 1 12458999999877 799999999999997754
No 118
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=46.24 E-value=1.2e+02 Score=28.57 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=56.4
Q ss_pred cccccceeeeeecceeeecc-ccCCCCCCcc--ceeeeeccceEEecCCcceeeCceEEEEEEeCCCC--CCcceeeccC
Q 004608 26 LQYSRKRYFLLEDHFLKSFK-SVPHSKNEDP--VRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN--HNDQLKLGAS 100 (742)
Q Consensus 26 ~~~~~~ry~vl~~~~~~~yK-r~P~~~~~~p--i~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~--~~~~~~~~~~ 100 (742)
+.-++.|.++|=.+.|=+=| +.++.....| +.+ ..+.+.+.|.+-+.++.=.-|.+..+.. ..+.+.+-|.
T Consensus 21 ~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK----~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~ 96 (114)
T cd01232 21 IQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYK----SKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKAN 96 (114)
T ss_pred cCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEe----cceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECC
Confidence 45678888888888775555 3332211122 222 3344444455455544555566665554 3578889999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004608 101 SPEEAAKWIHSLQEAAL 117 (742)
Q Consensus 101 ~~eea~~w~~a~~~a~~ 117 (742)
|.|+-..|+..++++.+
T Consensus 97 s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 97 SQETKQEWVKKIREILQ 113 (114)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998865
No 119
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=39.92 E-value=21 Score=44.54 Aligned_cols=94 Identities=22% Similarity=0.386 Sum_probs=63.8
Q ss_pred ceeeeeEEEeeecccccccccceeeeeec--ceeeeccccCCCCCCccceeeeec--cceEEecCCcceeeCceEEEEEE
Q 004608 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIID--SCIRVTDNGRESIHRKVFFIFTL 85 (742)
Q Consensus 10 ~~~egWm~~~~~~~lg~~~~~~ry~vl~~--~~~~~yKr~P~~~~~~pi~~~ii~--~~~rVed~Gr~~~~~~~~~v~~~ 85 (742)
..+||.+|.=|+--- -+ ..|||||.. ..|.||..-- +..| +|+|| .---|...|-+.+-.+.||=+..
T Consensus 1634 r~~eG~LyKrGA~lK--~W-k~RwFVLd~~khqlrYYd~~e---dt~p--kG~IdLaevesv~~~~~k~vdekgffdlkt 1705 (1732)
T KOG1090|consen 1634 RIPEGYLYKRGAKLK--LW-KPRWFVLDPDKHQLRYYDDFE---DTKP--KGCIDLAEVESVALIGPKTVDEKGFFDLKT 1705 (1732)
T ss_pred cCcccchhhcchhhc--cc-ccceeEecCCccceeeecccc---cccc--cchhhhhhhhhhcccCccccCccceeeeeh
Confidence 349999999666332 23 679999975 5788887221 2333 56666 11123337778888888886643
Q ss_pred eCCCCCCcceeeccCCHHHHHHHHHHHHHHH
Q 004608 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (742)
Q Consensus 86 yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~ 116 (742)
..+...+-+.++-+|-+|++.++..+
T Consensus 1706 -----t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1706 -----TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred -----hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 33444588999999999999999864
No 120
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=37.82 E-value=72 Score=37.90 Aligned_cols=92 Identities=28% Similarity=0.409 Sum_probs=61.0
Q ss_pred eeeeEEEeeecccccccccceeeeeecceeeecc---ccCCCCCCccceeeeec-cceEE-ec-CCcceeeCceEEEEEE
Q 004608 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFK---SVPHSKNEDPVRSAIID-SCIRV-TD-NGRESIHRKVFFIFTL 85 (742)
Q Consensus 12 ~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yK---r~P~~~~~~pi~~~ii~-~~~rV-ed-~Gr~~~~~~~~~v~~~ 85 (742)
-||=++.+.++ ..-+..||++|=+..+-|=| +.|-+. ===+++++ .|+-| ++ ++- -++.|++ +
T Consensus 274 KEG~l~Kis~k---~~~~qeRylfLFNd~~lyc~~r~~~~~~k---~~~r~~~s~~~~~v~~~~~~~---~~~tF~~-~- 342 (623)
T KOG4424|consen 274 KEGQLQKISAK---NGTTQERYLFLFNDILLYCKPRKRLPGSK---YEVRARCSISHMQVQEDDNEE---LPHTFIL-T- 342 (623)
T ss_pred hccceeeeecc---CCCcceeEEEEehhHHHhhhhhhhcccce---eccceeeccCcchhccccccc---CCceEEE-e-
Confidence 79999999877 56678999999887765555 334332 11233333 12222 22 221 1234443 3
Q ss_pred eCCCCCCcceeeccCCHHHHHHHHHHHHHHHHc
Q 004608 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 86 yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~~~ 118 (742)
++.+-+++.+.|.+|...|+.+++.||+.
T Consensus 343 ----G~~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 343 ----GKKRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred ----cccceEEeecCchhhHHHHHHHHHHHHHH
Confidence 37888999999999999999999999984
No 121
>PLN02647 acyl-CoA thioesterase
Probab=36.84 E-value=1.4e+02 Score=34.72 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=49.9
Q ss_pred cCCCCCCccceeeeec--------cceEEec------CCcceeeCceEEEEEEeCC-CCCCccee-eccCCHHHHHHHHH
Q 004608 47 VPHSKNEDPVRSAIID--------SCIRVTD------NGRESIHRKVFFIFTLYNT-SNHNDQLK-LGASSPEEAAKWIH 110 (742)
Q Consensus 47 ~P~~~~~~pi~~~ii~--------~~~rVed------~Gr~~~~~~~~~v~~~yn~-~~~~~~~~-~~~~~~eea~~w~~ 110 (742)
.|...|+...-.|-|. ..++|.. .|.+.+...++|+|-..|. .+++..++ +-+.|.+|.++|.+
T Consensus 156 ~Pi~~g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~~~gkp~pVp~l~pete~Ek~~~e~ 235 (437)
T PLN02647 156 KPIRVDVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDSKTGKSAPVNRLSPETEEEKLLFEE 235 (437)
T ss_pred CCCcCCcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcCCCCCeeeCCCCCCCCHHHHHHHHH
Confidence 5777665555455543 4555553 2567789999999999998 66777776 88999999999776
Q ss_pred HHHHH
Q 004608 111 SLQEA 115 (742)
Q Consensus 111 a~~~a 115 (742)
+.+..
T Consensus 236 a~~R~ 240 (437)
T PLN02647 236 AEARN 240 (437)
T ss_pred HHHHH
Confidence 66544
No 122
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=35.77 E-value=92 Score=28.97 Aligned_cols=86 Identities=24% Similarity=0.379 Sum_probs=49.9
Q ss_pred ceeeeeEEEeeecccccccccceeeeeecc-eeeeccccCCCCCCccceeeeec--cceEEecCCcceeeCceEEEEEEe
Q 004608 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDH-FLKSFKSVPHSKNEDPVRSAIID--SCIRVTDNGRESIHRKVFFIFTLY 86 (742)
Q Consensus 10 ~~~egWm~~~~~~~lg~~~~~~ry~vl~~~-~~~~yKr~P~~~~~~pi~~~ii~--~~~rVed~Gr~~~~~~~~~v~~~y 86 (742)
..++|-+..- + |. +.++|-|+|.+. .|-|+. |.. -+.+|-|. ..++|+-. +.+.|+|-+
T Consensus 13 Il~~g~v~K~--k--gl-~~kkR~liLTd~PrL~Yvd--p~~----~~~KGeI~~~~~l~v~~k-----~~~~F~I~t-- 74 (104)
T PF14593_consen 13 ILKQGYVKKR--K--GL-FAKKRQLILTDGPRLFYVD--PKK----MVLKGEIPWSKELSVEVK-----SFKTFFIHT-- 74 (104)
T ss_dssp EEEEEEEEEE--E--TT-EEEEEEEEEETTTEEEEEE--TTT----TEEEEEE--STT-EEEEC-----SSSEEEEEE--
T ss_pred EEEEEEEEEe--e--ce-EEEEEEEEEccCCEEEEEE--CCC----CeECcEEecCCceEEEEc-----cCCEEEEEC--
Confidence 3478888773 2 22 379999999887 554543 443 23456663 67888843 334444322
Q ss_pred CCCCCCcceeeccCCHHHHHHHHHHHHHHHHc
Q 004608 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 87 n~~~~~~~~~~~~~~~eea~~w~~a~~~a~~~ 118 (742)
+ .++.-+.. ....|..|.++++++..+
T Consensus 75 -p---~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 -P---KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp -T---TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred -C---CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 1 33333333 445699999999999764
No 123
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=33.77 E-value=45 Score=41.20 Aligned_cols=82 Identities=24% Similarity=0.342 Sum_probs=64.1
Q ss_pred ccccccceeeeeecceeeeccccCCCC--CCccceeeeeccceEEecCCcceeeCceEEEEEEeCCCCCCcceeeccCCH
Q 004608 25 GLQYSRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSP 102 (742)
Q Consensus 25 g~~~~~~ry~vl~~~~~~~yKr~P~~~--~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~ 102 (742)
--.+.+-|||+|.|.++-.||..-+.. .+-|+.++++=.|++ ++..--..+-||+| .+.++.-+.|.+.
T Consensus 1047 ~g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gvk------kklKpPt~wg~T~i---~ekhh~~l~cd~s 1117 (1186)
T KOG1117|consen 1047 SGNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGVK------KKLKPPTSWGFTAI---SEKHHWYLCCDSS 1117 (1186)
T ss_pred cCCccceEEEEecCcEEEEeehhhccccccccccccceEEeccc------cccCCCCccceeee---eecceEEEecCCc
Confidence 334668899999999999999555432 378999999876664 33445578899999 3345788999999
Q ss_pred HHHHHHHHHHHHH
Q 004608 103 EEAAKWIHSLQEA 115 (742)
Q Consensus 103 eea~~w~~a~~~a 115 (742)
.+-..|+-.+--|
T Consensus 1118 ~~~~ewfts~fka 1130 (1186)
T KOG1117|consen 1118 SEQTEWFTSIFKA 1130 (1186)
T ss_pred cccchhhhhhhhh
Confidence 9999999988766
No 124
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=33.71 E-value=1.1e+02 Score=38.00 Aligned_cols=97 Identities=18% Similarity=0.401 Sum_probs=64.3
Q ss_pred eeeeEEEee-------ecccccccccceeeeeecceeeeccccCCCCCCccceeeeec--cceEEecCCccee-eCceEE
Q 004608 12 MEGWLHLIR-------SNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIID--SCIRVTDNGRESI-HRKVFF 81 (742)
Q Consensus 12 ~egWm~~~~-------~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii~--~~~rVed~Gr~~~-~~~~~~ 81 (742)
.-|.+|--- .-|=++.-+..+|-||.|-.+.||...-++ .| .+.|+ .=+.+.-.--..+ +-+.+|
T Consensus 494 ~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~---tP--~~lI~~~Eivclav~~pd~~pn~~~~f 568 (1186)
T KOG1117|consen 494 LCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKST---TP--NGLININEIVCLAVHPPDTYPNTGFIF 568 (1186)
T ss_pred ccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCC---CC--CceeeccceEEEeecCCCCCCCcCcee
Confidence 458888652 123456667788999999999999955544 22 12232 1122221222333 336899
Q ss_pred EEEEeCCCCCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 82 v~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
+|.+|=..+ .-+.++..+++++++|.+++..+
T Consensus 569 ~fE~~l~~e--r~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 569 IFEIYLPGE--RVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred EEEEeeccc--ceEEeecccHHHHHHHHHHHHHh
Confidence 999997765 67779999999999999987644
No 125
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=33.55 E-value=38 Score=31.04 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=26.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 230 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~ 230 (742)
+....+|++||+.|+++|.|.+ ...+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPE-FTRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCch-hhhheecc
Confidence 4567789999999999999998 78999765
No 126
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=33.48 E-value=91 Score=34.93 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=68.7
Q ss_pred cccccceeeeeEEEeeecccccccccceeeeeecceeeeccccCCCCCCccceeeee----ccceEEecCCcceeeCceE
Q 004608 5 QITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAII----DSCIRVTDNGRESIHRKVF 80 (742)
Q Consensus 5 ~~~~~~~~egWm~~~~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~~~~~pi~~~ii----~~~~rVed~Gr~~~~~~~~ 80 (742)
.-..+.+|-||+.-=--|.|--+-.+.||+-|+|..+..|-.-|-..-+- .|..+. ..-++|-. ---.-.+--
T Consensus 276 ~v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw-~rAe~ty~vye~mfki~K--dsd~~D~R~ 352 (505)
T KOG3549|consen 276 AVGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADW-SRAEVTYKVYETMFKIVK--DSDTVDSRQ 352 (505)
T ss_pred CccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhh-hhhhhhHHHHHHHHHHhc--ccccccccc
Confidence 34556779999976545557777779999999999999998888653110 011000 01111110 000112233
Q ss_pred EEEEEeCCCCCCcceeeccCCHHHHHHHHHHHHHHHH
Q 004608 81 FIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (742)
Q Consensus 81 ~v~~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a~~ 117 (742)
|-|.+-...++++-+- .....|.++|-++|+.|+-
T Consensus 353 ~CF~~qs~~ge~~yfs--VEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 353 HCFLLQSSGGEPRYFS--VELRSELARWENSFQAATF 387 (505)
T ss_pred ceEEEEcCCCCceEEE--EehhhHHHHHHHHHhhHHh
Confidence 6778877777766655 6778899999999999964
No 127
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=33.01 E-value=1e+02 Score=30.88 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=59.9
Q ss_pred eecccccccccceeeeeecceeeecc-ccCCCCCCccceeeeec--------cceEEe--c--CCcceeeCceEEEEEEe
Q 004608 20 RSNRIGLQYSRKRYFLLEDHFLKSFK-SVPHSKNEDPVRSAIID--------SCIRVT--D--NGRESIHRKVFFIFTLY 86 (742)
Q Consensus 20 ~~~~lg~~~~~~ry~vl~~~~~~~yK-r~P~~~~~~pi~~~ii~--------~~~rVe--d--~Gr~~~~~~~~~v~~~y 86 (742)
.+.++++.++-. -+++--- .+|...|+....-|-|. .+++|- + .|...+-.+++|+|-..
T Consensus 47 ~A~~~a~~~vVT-------asvd~v~F~~Pv~vGd~v~~~a~v~~~GrTSm~V~Vev~~~~~~~~~~~~~t~~~ft~VAv 119 (157)
T COG1607 47 AASRHAGGRVVT-------ASVDSVDFKKPVRVGDIVCLYARVVYTGRTSMEVGVEVWAEDIRSGERRLATSAYFTFVAV 119 (157)
T ss_pred HHHHHhCCeEEE-------EEeceEEEccccccCcEEEEEEEEeecCcccEEEEEEEEEecccCCcceEeeeEEEEEEEE
Confidence 456666666555 3343322 56888887666655553 233333 2 44455566899999999
Q ss_pred CCCCCCccee-eccCCHHHHHHHHHHHHHHHHc
Q 004608 87 NTSNHNDQLK-LGASSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 87 n~~~~~~~~~-~~~~~~eea~~w~~a~~~a~~~ 118 (742)
|..+++..++ ..+.+.+|.++ +..|.++
T Consensus 120 d~~gkP~~vp~~~~~~~~e~~~----~~~A~~r 148 (157)
T COG1607 120 DEDGKPTPVPREEPETEEEKRR----YAAAGAR 148 (157)
T ss_pred CCCCCcccCCccCCccHHHHhh----hhhhHHH
Confidence 9999999999 88999988888 6666553
No 128
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.04 E-value=78 Score=39.62 Aligned_cols=108 Identities=17% Similarity=0.376 Sum_probs=69.1
Q ss_pred cccceeeeeEEEe-eecccccccccceeeeeecceeeeccccCCC-CCCccceeeeeccceE--EecCCcceeeCceEEE
Q 004608 7 TSQGRMEGWLHLI-RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCIR--VTDNGRESIHRKVFFI 82 (742)
Q Consensus 7 ~~~~~~egWm~~~-~~~~lg~~~~~~ry~vl~~~~~~~yKr~P~~-~~~~pi~~~ii~~~~r--Ved~Gr~~~~~~~~~v 82 (742)
...+.|-|.|+.+ -.+.+|- | |.|+-+|+|..+.|+| .|.+ ....||-..=...||+ ||.--|.+--...=|-
T Consensus 987 ~idVEYrGFLtmfed~sgfGa-W-hRyWc~L~gg~I~fWk-~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFh 1063 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDGSGFGA-W-HRYWCALHGGEIKFWK-YPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFH 1063 (1116)
T ss_pred ccceeeeeeeeeeeccCCCch-h-hhhhHHhcCCeeeeec-CcchhcccCcceeeehhhhhccccccchhhhccCCceeE
Confidence 3456799999988 4566776 4 8899999999999998 6765 3457765544445554 4443222222222222
Q ss_pred EEEeCCCC-------CCc--ceeeccCCHHHHHHHHHHHHHHHH
Q 004608 83 FTLYNTSN-------HND--QLKLGASSPEEAAKWIHSLQEAAL 117 (742)
Q Consensus 83 ~~~yn~~~-------~~~--~~~~~~~~~eea~~w~~a~~~a~~ 117 (742)
+.++-++. -.+ +.-|+|-|+||-.-|+.++-.+..
T Consensus 1064 ie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1064 IEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred EEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 22222221 122 444999999999999999998865
No 129
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=29.28 E-value=5.2e+02 Score=24.96 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=29.2
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004608 197 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF 229 (742)
Q Consensus 197 ~~~~Ka~~vV~aspe~VfevL~D~d~~R~eWD~ 229 (742)
...++.+.+|++|++.||+.+.|.+ .+.+|-.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence 4678999999999999999999998 7999987
No 130
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.22 E-value=3.2e+02 Score=26.63 Aligned_cols=90 Identities=14% Similarity=0.210 Sum_probs=61.8
Q ss_pred cccccceeeeeecceeeecccc--CCCCCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCCCCCcceeeccCCHH
Q 004608 26 LQYSRKRYFLLEDHFLKSFKSV--PHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPE 103 (742)
Q Consensus 26 ~~~~~~ry~vl~~~~~~~yKr~--P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~e 103 (742)
+.-++-|+++|=.+.|=.=|+. +......|.- +-=.++.+.+.|..-+.++.-.-|.|+.+.. ...+.+-|.|.|
T Consensus 26 r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y--~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e 102 (133)
T cd01227 26 RFKPMQRHIFLHEKAVLFCKKREENGEGEKAPSY--SFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPE 102 (133)
T ss_pred ccCCceeEEEEecceEEEEEEeccCCCCCcceeE--EEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHH
Confidence 4557789999999988666633 2221123321 2234455666666666666666666777654 578889999999
Q ss_pred HHHHHHHHHHHHHHc
Q 004608 104 EAAKWIHSLQEAALK 118 (742)
Q Consensus 104 ea~~w~~a~~~a~~~ 118 (742)
.-..|++.+.+...+
T Consensus 103 ~K~~Wv~~I~~iL~~ 117 (133)
T cd01227 103 IKAAWVNEIRKVLTS 117 (133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 131
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=27.41 E-value=55 Score=30.38 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=26.8
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCcccccccc
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCF 231 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~~~ 231 (742)
++....|+||+++|++++.|.+ ...+|....
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~ 33 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPE-HFGQWFGVK 33 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChh-hhhhccccc
Confidence 5667889999999999999998 688998753
No 132
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=26.62 E-value=31 Score=40.67 Aligned_cols=87 Identities=26% Similarity=0.363 Sum_probs=60.8
Q ss_pred eecccccccccceeeeeecceeeecc-ccCCCCCCccceeeeecc-c---eE-EecCCcceeeCceEEEEEEeCCCCCCc
Q 004608 20 RSNRIGLQYSRKRYFLLEDHFLKSFK-SVPHSKNEDPVRSAIIDS-C---IR-VTDNGRESIHRKVFFIFTLYNTSNHND 93 (742)
Q Consensus 20 ~~~~lg~~~~~~ry~vl~~~~~~~yK-r~P~~~~~~pi~~~ii~~-~---~r-Ved~Gr~~~~~~~~~v~~~yn~~~~~~ 93 (742)
|+=|+=+.| +.|||.|.|-.|.|-| .-|.+-++-| ||. - +| |...-+++-..++|=||+.= +
T Consensus 746 GrWRf~kRW-~TrYFTLSgA~L~~~kg~s~~dS~~~~-----IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD------~ 813 (851)
T KOG3723|consen 746 GRWRFIKRW-KTRYFTLSGAQLLFQKGKSKDDSDDCP-----IDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD------K 813 (851)
T ss_pred cchhhhhhh-ccceEEecchhhhcccCCCCCCCCCCC-----ccHHHhhhHHHHHhhhhhcccchhhheeecC------c
Confidence 666666777 8899999999998877 4444432322 331 1 12 22223445678899999873 3
Q ss_pred ceeeccCCHHHHHHHHHHHHHHHHc
Q 004608 94 QLKLGASSPEEAAKWIHSLQEAALK 118 (742)
Q Consensus 94 ~~~~~~~~~eea~~w~~a~~~a~~~ 118 (742)
++-+.|.+..-|+.|.+.+.=|+++
T Consensus 814 T~ILKaKDeKNAEEWlqCL~IavAH 838 (851)
T KOG3723|consen 814 TYILKAKDEKNAEEWLQCLNIAVAH 838 (851)
T ss_pred eEEeecccccCHHHHHHHHHHHHHH
Confidence 4678899999999999999988875
No 133
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=26.08 E-value=5.6e+02 Score=24.12 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=24.3
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004608 200 IMAVGVVDGTSEAIFQTLMSLGASRSVWDF 229 (742)
Q Consensus 200 ~Ka~~vV~aspe~VfevL~D~d~~R~eWD~ 229 (742)
+...-.++||++.||+++.|.+ ...+|-.
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~-~~~~W~~ 30 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPD-ALAKWLP 30 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHH-HHhhcCC
Confidence 3456679999999999999998 6889864
No 134
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.39 E-value=2.2e+02 Score=25.91 Aligned_cols=74 Identities=26% Similarity=0.433 Sum_probs=38.8
Q ss_pred ccccccccceeeeeecc-eeeeccccCCC---CCCccceeeeeccceEEecCCcceeeCceEEEEEEeCCCCCCcceeec
Q 004608 23 RIGLQYSRKRYFLLEDH-FLKSFKSVPHS---KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLG 98 (742)
Q Consensus 23 ~lg~~~~~~ry~vl~~~-~~~~yKr~P~~---~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~ 98 (742)
|-|. |.++|=|+|-.. .|-|+ +|.. .|+.|+-+ ++++||. ..++.|+| .+-+..-.++
T Consensus 10 r~gl-f~kkR~LiLTd~PrL~yv--dp~~~~~KgeIp~s~----~~l~v~~-----~~~~~F~I----~Tp~rty~le-- 71 (89)
T cd01262 10 RKGL-FAKKRQLILTNGPRLIYV--DPVKKVVKGEIPWSD----VELRVEV-----KNSSHFFV----HTPNKVYSFE-- 71 (89)
T ss_pred hhcc-ccceeeEEEecCceEEEE--cCCcCeEEeEecccc----cceEEEE-----ecCccEEE----ECCCceEEEE--
Confidence 3444 668888888653 22222 4543 34555443 3677773 34455555 1111111111
Q ss_pred cCCHHHHHHHHHHHHHH
Q 004608 99 ASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 99 ~~~~eea~~w~~a~~~a 115 (742)
.....|.+|+++++++
T Consensus 72 -D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 72 -DPKGRASQWKKAIEDL 87 (89)
T ss_pred -CCCCCHHHHHHHHHHH
Confidence 1124688899999987
No 135
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=22.25 E-value=1.9e+02 Score=34.70 Aligned_cols=100 Identities=20% Similarity=0.397 Sum_probs=65.3
Q ss_pred ccceeeeeEEEeeecccccccccceeeee--ecceeeecc--ccCCCCCCccceeeeeccceEEecCCcceeeCceEEEE
Q 004608 8 SQGRMEGWLHLIRSNRIGLQYSRKRYFLL--EDHFLKSFK--SVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIF 83 (742)
Q Consensus 8 ~~~~~egWm~~~~~~~lg~~~~~~ry~vl--~~~~~~~yK--r~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~ 83 (742)
+...|||++|.-..++||-+| .+-|-+- +.|.+.|-- .+|... .-+.-+.+.-.|.|=- -+++-.+ |-|
T Consensus 263 ~p~t~eGYlY~QEK~~~g~sW-vKyYC~Y~retk~~TMvp~~qk~g~k-~g~~~~~~lKsC~RRk---tdSIdKR--FCF 335 (812)
T KOG1451|consen 263 TPSTKEGYLYMQEKSKIGKSW-VKYYCVYSRETKIFTMVPANQKTGTK-MGQTATFKLKSCSRRK---TDSIDKR--FCF 335 (812)
T ss_pred CCcccceeeeehhhhhccchh-hhheeEeecccceEEEeecccCCCCc-CCCcceEEehhhccCc---ccccccc--eee
Confidence 345599999999999999988 5656554 456666644 333332 2344455555555521 2222222 334
Q ss_pred EEeCCCCCCcceeeccCCHHHHHHHHHHHHHH
Q 004608 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (742)
Q Consensus 84 ~~yn~~~~~~~~~~~~~~~eea~~w~~a~~~a 115 (742)
.|- ..+.+..++|-|-+.++.+-||+|..+|
T Consensus 336 Dve-~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 336 DVE-VEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eee-ecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 332 2456789999999999999999999888
Done!