Query 004609
Match_columns 742
No_of_seqs 328 out of 4685
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 18:39:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004609.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1905-1909//hhsearch_pdb/004609hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb9_A DNA mismatch repair pro 1.0 1 1 584.9 31.8 481 1-538 302-796 (800)
2 1ewq_A DNA mismatch repair pro 1.0 1 1 529.6 37.8 465 1-538 283-762 (765)
3 3thx_B DNA mismatch repair pro 1.0 1 1 529.4 35.9 488 1-537 355-876 (918)
4 3thx_A DNA mismatch repair pro 1.0 1 1 525.2 36.5 493 1-541 337-854 (934)
5 2o8b_B DNA mismatch repair pro 1.0 1 1 524.2 31.3 492 1-541 431-988 (1022)
6 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 218.6 15.3 168 326-494 4-220 (359)
7 3rlf_A Maltose/maltodextrin im 1.0 1 1 216.7 13.7 168 326-494 3-215 (381)
8 3gfo_A Cobalt import ATP-bindi 1.0 1 1 216.0 15.7 168 326-495 7-226 (275)
9 3tui_C Methionine import ATP-b 1.0 1 1 214.8 17.1 169 324-494 22-245 (366)
10 4g1u_C Hemin import ATP-bindin 1.0 1 1 214.6 15.8 168 326-495 11-230 (266)
No 1
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=1.00 E-value=1 Score=584.92 Aligned_cols=481 Identities=21% Similarity=0.283 Sum_probs=423.7
Q ss_pred CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 92677730499999999999999999999999987299999997377999999861999999999999999999999999
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK 80 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~i~~~l~~~~e~~~~~~~~~~~l~~~~Di~~~l~~~~~g~~l~~~el~~i~~~l~~~~~l~~ 80 (742)
||+|.+++|+++|..|.+.|++||+.|+++.++......+|.+++|+++++.|+..|. +++.||..++.+|..+..++.
T Consensus 302 ~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~-~~~~dl~~l~~~l~~~~~l~~ 380 (800)
T 1wb9_A 302 MGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRT-ARPRDLARMRHAFQQLPELRA 380 (800)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHHHHHHHHTTCSHHHHHHHHHHTC-CCHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999872588999999999999999999999977887527865899999997299-899999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9987320047742240049998814999168999995111168-------881258959888999999997799999999
Q 004609 81 KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLDSLL 153 (742)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~-------~~~v~d~aS~~L~~iR~~~~~~~~~l~~~l 153 (742)
++... ..+.|..+...+..++++.+.|+++||++ ++.|+|++|++|+++|+.+++..+.+.++.
T Consensus 381 ~l~~~---------~~~~L~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~ 451 (800)
T 1wb9_A 381 QLETV---------DSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLE 451 (800)
T ss_dssp HHHSC---------CCHHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHC---------CCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98736---------868999999736028999999999867475445413884678978899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCC---CEEEEECCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999936999866000168---179987054456799958998705883899333113212259999969999999
Q 004609 154 KKVAAQIFQAGGIDKPLITKRRS---RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEE 230 (742)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~~r~~---r~~i~vk~~~~~~~~~g~v~~~S~sg~t~~~ep~~~~~l~n~~~~l~~~e~~ee 230 (742)
.+.. ...++ ..++.+.+ +|||+|+.+++..+|+||+|++|.+|.++|++|. +.++++++.++..++..++
T Consensus 452 ~~~~----~~~~~--~~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e 524 (800)
T 1wb9_A 452 VRER----ERTGL--DTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPE-LKEYEDKVLTSKGKALALE 524 (800)
T ss_dssp HHHH----HHHTC--TTCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHCC--CCEEEEECCCCEEEEEEECCCCCCCCCCEEEEEECCCCCEEECHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 9999----98399--814787647313999984320013885127864026887884789-9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999950999999999999999999999783727934001247998887622788064134212310000112
Q 004609 231 TAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSA 310 (742)
Q Consensus 231 ~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~ 310 (742)
.+|+.+|+..+..+.+.+..+.+.+++||+++|+|.+|.+++||+|.+++++ .+.++++|||+++.. ..
T Consensus 525 ~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~~-~~---- 593 (800)
T 1wb9_A 525 KQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP------GIRITEGRHPVVEQV-LN---- 593 (800)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEECSSS------CEEEEEECCTTHHHH-CS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC------CEEEEECCCCEEECC-CC----
T ss_conf 9999999999988899999999999999999999999986898364777998------789995416378724-79----
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCCC-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCC
Q ss_conf 4689998877789880898000221199200155300-278239999907999810498448765654440623337999
Q 004609 311 ASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (742)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~~~i~~~y~~~~v~vsl~l-~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~ 389 (742)
+.++++|+.+ ++| ++++|+|||||||||+||+++.+.+|++.|+++|+..
T Consensus 594 ---------------------------~~~vlndisl~~~g-~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~- 644 (800)
T 1wb9_A 594 ---------------------------EPFIANPLNLSPQR-RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK- 644 (800)
T ss_dssp ---------------------------SCCCCEEEEECSSS-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-
T ss_pred ---------------------------CCEEEECCCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHC-
T ss_conf ---------------------------83651023126788-5899999999876899999998898875186421320-
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEE
Q ss_conf 9924999999982993000166254219999999999836999399980799999989899999999999833-894899
Q 004609 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAV 468 (742)
Q Consensus 390 ~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~-~~~~vi 468 (742)
..++++++++.+++..+++..+.|+||++++++..++..+++|+|+||||||+|||+.++.++++++++++.+ .++++|
T Consensus 645 ~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl 724 (800)
T 1wb9_A 645 VEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTL 724 (800)
T ss_dssp EEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 45421999876588788887426555688999999998456997899979987898667999999999999862398689
Q ss_pred EEECCHHHHHHCCCCCCEECCEEEEECC--CCCCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9925823651025453110645998348--532101210278899548899997799989999999999973
Q 004609 469 VTTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (742)
Q Consensus 469 itTH~~~l~~~a~~~~~i~~~~~~~~~~--~l~~~Y~l~~g~~~~s~a~~ia~~~gl~~~vi~~A~~~~~~~ 538 (742)
++|||.++..+++....+.|++|.++.. .+.++|++..|.++.|||+.+|+.+|+|+.|+++|++++..+
T Consensus 725 ~~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~l 796 (800)
T 1wb9_A 725 FATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL 796 (800)
T ss_dssp EECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHCEEEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 983788999874432023778999997289178987998789998589999998198999999999999987
No 2
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=1.00 E-value=1 Score=529.62 Aligned_cols=465 Identities=22% Similarity=0.295 Sum_probs=403.7
Q ss_pred CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 926777304999999999999999999999999---87299999997377999999861999999999999999999999
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM---MQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~i~~~l~~~~e~~~~---~~~~~~~l~~~~Di~~~l~~~~~g~~l~~~el~~i~~~l~~~~~ 77 (742)
||+|.+++|+++|..|.+.|+.|++.++++.+. ......+|.+++|+++++.++..|. +++.||..++.++..+..
T Consensus 283 ~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~-~~~~dl~~l~~~l~~~~~ 361 (765)
T 1ewq_A 283 PGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGR-ASPKDLGALRRSLQILPE 361 (765)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 9999999976574789999999999999997398999988998735778899999997289-988999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999987320047742240049998814999168999995111168-------881258959888999999997799999
Q 004609 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLD 150 (742)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~-------~~~v~d~aS~~L~~iR~~~~~~~~~l~ 150 (742)
++.++. +...+..++++.+.|.++|+++ ++.|+|++|++|+++|+.++...+.+.
T Consensus 362 l~~~l~------------------l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~ 423 (765)
T 1ewq_A 362 LRALLG------------------EEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFL 423 (765)
T ss_dssp HHHHHC------------------TTSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------------------HHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999998------------------77516537999999999863464344204775378878999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC---CEEEEECCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999936999866000168---179987054456799958998705883899333113212259999969999
Q 004609 151 SLLKKVAAQIFQAGGIDKPLITKRRS---RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEI 227 (742)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~r~~---r~~i~vk~~~~~~~~~g~v~~~S~sg~t~~~ep~~~~~l~n~~~~l~~~e~ 227 (742)
++..+. ....++. .++.+.+ +|+|+|+..++..+|+.|+|.+|.+|.++|++|. +.++++++..+..++.
T Consensus 424 ~~~~~~----~~~~~~~--~l~i~~~~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~-l~el~~~i~~~~~~~~ 496 (765)
T 1ewq_A 424 ELEERE----RERTGIP--TLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE-MKEKEREVYRLEALIR 496 (765)
T ss_dssp HHHHHH----HHHHCCT--TCEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHCCCC--CEEEEECCCEEEEEEEEHHHHHCCCCCEEEEEECCCCCEEECHH-HHHHHHHHHHHHHHHH
T ss_conf 999999----9972999--55898626415999964676503986359987226875787789-9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 99999999999999950999999999999999999999783727934001247998887622788064134212310000
Q 004609 228 AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRS 307 (742)
Q Consensus 228 ~ee~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~ 307 (742)
.++.+|+.+|+..+..+.+.+..+.+.+++||+++|+|.+|..++||+|.+ +. .+.++++|||+++. .
T Consensus 497 ~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~-~~-------~i~i~~~rHP~le~---~- 564 (765)
T 1ewq_A 497 RREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRF-GD-------RLQIRAGRHPVVER---R- 564 (765)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE-SS-------SEEEEEECCTTGGG---T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC-CC-------CEEEEEEECCEECC---C-
T ss_conf 999999999999999989999999999999999995499998679334135-77-------38999727863706---8-
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCC
Q ss_conf 11246899988777898808980002211992001553002782399999079998104984487656544406233379
Q 004609 308 LSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAK 387 (742)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~l~~~~i~~~y~~~~v~vsl~l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~ 387 (742)
+.++++|+.+. | ++++|+|||||||||+||+++.+.+|++.|.++|+.
T Consensus 565 ------------------------------~~~vl~disl~-g-~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~ 612 (765)
T 1ewq_A 565 ------------------------------TEFVPNDLEMA-H-ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE 612 (765)
T ss_dssp ------------------------------SCCCCEEEEES-S-CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSS
T ss_pred ------------------------------CCEEEEECCCC-C-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEHH
T ss_conf ------------------------------84575110577-8-689999999987689999998656531168553044
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99992499999998299300016625421999999999983699939998079999998989999999999983389489
Q 004609 388 NHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA 467 (742)
Q Consensus 388 ~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~v 467 (742)
. ..++++++++.+++..+++..+.|+|+.++.+++.++..+++|+|+||||||+||++.++.++++++++++.+.++++
T Consensus 613 ~-~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~v 691 (765)
T 1ewq_A 613 E-AHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYT 691 (765)
T ss_dssp E-EEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred C-CCEEEHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 0-513437776531978999874236778999999999985668978999889988887689999999999999689989
Q ss_pred EEEECCHHHHHHCCCCCCEECCEEEEECC--CCCCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99925823651025453110645998348--532101210278899548899997799989999999999973
Q 004609 468 VVTTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (742)
Q Consensus 468 iitTH~~~l~~~a~~~~~i~~~~~~~~~~--~l~~~Y~l~~g~~~~s~a~~ia~~~gl~~~vi~~A~~~~~~~ 538 (742)
|++||+.++..++ ...+.|++|.++.. .+.++|++..|.++.|||+.+|+.+|+|+.|+++|+.+...+
T Consensus 692 l~~TH~~~l~~~~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~l 762 (765)
T 1ewq_A 692 LFATHYFELTALG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAM 762 (765)
T ss_dssp EEECCCHHHHTCC--CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHH--HHCCEEEEEEEEECCCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9992788999765--4160589999997089078987897789999669999998298999999999999987
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=1.00 E-value=1 Score=529.43 Aligned_cols=488 Identities=22% Similarity=0.273 Sum_probs=387.5
Q ss_pred CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 92677730499999999999999999999999----98729999999737799999986199999999999999999999
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA----MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~i~~~l~~~~e~~~----~~~~~~~~l~~~~Di~~~l~~~~~g~~l~~~el~~i~~~l~~~~ 76 (742)
||+|++++|+.+|..|.+.|+.||+.++++.. +.....-.|.+++|+++++.|+..|.. ++.||..+...|..+.
T Consensus 355 mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~~-~~~dl~~l~~~l~~l~ 433 (918)
T 3thx_B 355 FGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKC-STQEFFLIVKTLYHLK 433 (918)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCC-CHHHHHHHHHHHHHHH
T ss_conf 899999998758278999999999999999847957899999987268657788887603768-8899999999999999
Q ss_pred -HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCC-------CCCCCCC-CCHHHHHHHHHHHHHHH
Q ss_conf -99999987320047742240049998814999168999995111168-------8812589-59888999999997799
Q 004609 77 -NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDR-ASEDLELIRAERKRNME 147 (742)
Q Consensus 77 -~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~-------~~~v~d~-aS~~L~~iR~~~~~~~~ 147 (742)
.++..+..... ....+.|..+...++.+.+....+...|+++ ++.+.+. ..|.|+.+|...+....
T Consensus 434 ~~l~~~l~~~~~-----~~~~~lL~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 508 (918)
T 3thx_B 434 SEFQAIIPAVNS-----HIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVID 508 (918)
T ss_dssp HHHHHHHHHHHH-----TCCCHHHHHHHTHHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999887652-----025789999997555667899999999877664427742000243227779999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCE-EEECCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999369998660001681799870544567999589987058838-9933311321225999996999
Q 004609 148 NLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGAT-YFMEPKGAVEFNNMEVRLSNSE 226 (742)
Q Consensus 148 ~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~~i~vk~~~~~~~~~g~v~~~S~sg~t-~~~ep~~~~~l~n~~~~l~~~e 226 (742)
.++..+.+... .+. ...-.+++.+++||+|+|+.++...+| +..++.|+++++ +|++|. ++++++++..+....
T Consensus 509 ~~~~~l~~~~~-~i~--~~~~~~~~~~g~~y~iev~~~~~~~vp-~~~~~~~~~~~~~rf~tpe-l~~~~~~~~~~~e~~ 583 (918)
T 3thx_B 509 EIRMHLQEIRK-ILK--NPSAQYVTVSGQEFMIEIKNSAVSCIP-TDWVKVGSTKAVSRFHSPF-IVENYRHLNQLREQL 583 (918)
T ss_dssp HHHHHHHHHHH-HHT--CTTCCCEEETTEEEEEEEETTSGGGSC-SSCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHC--CCCCEEEEECCCEEEEEECHHHHHHCC-CEEEEEEECCCEEEEECHH-HHHHHHHHHHHHHHH
T ss_conf 99999999998-747--566436851287899997378770199-8489998347725997789-999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 99999999999999995099999999999999999999978372793400124799888762278806413421231000
Q 004609 227 IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLR 306 (742)
Q Consensus 227 ~~ee~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~ 306 (742)
...+.+++.++...+..+...+..+.+.+++||+++|+|.+|...+||+|.+++++ .+.++++|||+++.. +.
T Consensus 584 ~~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~~-~~ 656 (918)
T 3thx_B 584 VLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEER------KIVIKNGRHPVIDVL-LG 656 (918)
T ss_dssp HHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESSC------EEEEEEECCHHHHHH-TC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC------CEEEEECCCHHHHHH-HC
T ss_conf 99999999999999998899999999999999999999999734897477546888------479972565212223-13
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEE
Q ss_conf 01124689998877789880898000221199200--1553002782399999079998104984487656544406233
Q 004609 307 SLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYL 384 (742)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~v 384 (742)
.. +.+| +++|.+.+| ++++|+|||||||||+||++|++.+|++.|+++
T Consensus 657 ~~-----------------------------~~~V~ndvsl~~~~g-~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~v 706 (918)
T 3thx_B 657 EQ-----------------------------DQYVPNNTDLSEDSE-RVMIITGPNMGGKSSYIKQVALITIMAQIGSYV 706 (918)
T ss_dssp SC-----------------------------SSSCCEEEEECTTSC-CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred CC-----------------------------CCEECCCCCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 68-----------------------------956615662347887-089998999876589999998878886247634
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-C
Q ss_conf 379999924999999982993000166254219999999999836999399980799999989899999999999833-8
Q 004609 385 PAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-R 463 (742)
Q Consensus 385 pa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~-~ 463 (742)
|+.. ..++++++++.++|..+++..++|+||+||++++.++..+++|+||||||||+||||.++.++++++++++.+ .
T Consensus 707 pa~~-~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~ 785 (918)
T 3thx_B 707 PAEE-ATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDV 785 (918)
T ss_dssp SSSE-EEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 5211-122599999986785889998687765899999999986669978999689889998999999999999999824
Q ss_pred CCEEEEEECCHHHHHHCCCCCC-EECCEEEEE----------------CCCCCCCHHHHCCCCCCCHHHHHHHHCCCCHH
Q ss_conf 9489999258236510254531-106459983----------------48532101210278899548899997799989
Q 004609 464 VGLAVVTTHYADLSCLKDKDTR-FENAATEFS----------------LETLRPTYRILWGSTGDSNALNIAKSIGFDRK 526 (742)
Q Consensus 464 ~~~viitTH~~~l~~~a~~~~~-i~~~~~~~~----------------~~~l~~~Y~l~~g~~~~s~a~~ia~~~gl~~~ 526 (742)
++++|++|||+++..+++.... +.|++|.+. .+++.|+|++..|.++.|||+.+|+.+|+|..
T Consensus 786 g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~ 865 (918)
T 3thx_B 786 KSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGE 865 (918)
T ss_dssp CCEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHH
T ss_pred CCEEEEEECCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHH
T ss_conf 98699994768999998625144678999999715643334443457888345863562289987489999998296999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999997
Q 004609 527 IIQRAQKLVER 537 (742)
Q Consensus 527 vi~~A~~~~~~ 537 (742)
|+++|+.....
T Consensus 866 vi~rA~~~~~~ 876 (918)
T 3thx_B 866 ILKKAAHKSKE 876 (918)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 4
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=1.00 E-value=1 Score=525.21 Aligned_cols=493 Identities=18% Similarity=0.251 Sum_probs=401.3
Q ss_pred CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH---HHHCCC-CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 92677730499999999999999999999999---987299-99999737799999986199999999999999999999
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQP-LDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~i~~~l~~~~e~~~---~~~~~~-~~l~~~~Di~~~l~~~~~g~~l~~~el~~i~~~l~~~~ 76 (742)
||+|++++|+.+|..|.+.|..||+.++++.+ +..... ..|++++|+++++.|+..|.. ++.|+..++.++..+.
T Consensus 337 ~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~-~~~dl~~l~~~l~~~~ 415 (934)
T 3thx_A 337 QGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAA-NLQDCYRLYQGINQLP 415 (934)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTCC-CHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC-CHHHHHHHHHHHHHHH
T ss_conf 999999999748688999999999999998509589999999986478789999999962899-9999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCC--CHHHHHHHHCCCCHHHHHHHHHHHHCCC----C-CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999998732004774224--0049998814999168999995111168----8-8125895988899999999779999
Q 004609 77 NVWKKLTEAAELDGDSLQR--YSPLLELLKNCNFLTELEEKIGFCIDCK----L-LIILDRASEDLELIRAERKRNMENL 149 (742)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~~~~l~~~I~~~id~~----~-~~v~d~aS~~L~~iR~~~~~~~~~l 149 (742)
.++..+............. +.++.+. +..+..+.+.|+.+||.+ | +.|++++|++|+++|..+....+.+
T Consensus 416 ~l~~~l~~~~~~~~~~l~~~~~~~l~~~---~~~l~~~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l 492 (934)
T 3thx_A 416 NVIQALEKHEGKHQKLLLAVFVTPLTDL---RSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKM 492 (934)
T ss_dssp HHHHHHHHTCCSSSTTGGGGTHHHHHHH---HHHHHHHHHHHHTTBCTTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHHCCCCEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999998553311067898888899988---7659999999999857231424995138998999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCC---CCCCCCCC-CCEEEEECCCCCCC--CC-CCEEEEECCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 999999999999936999---86600016-81799870544567--99-9589987058838993331132122599999
Q 004609 150 DSLLKKVAAQIFQAGGID---KPLITKRR-SRMCVGIKASHKYL--LP-DGIALNVSSSGATYFMEPKGAVEFNNMEVRL 222 (742)
Q Consensus 150 ~~~l~~~~~~~~~~~~~~---~~~i~~r~-~r~~i~vk~~~~~~--~~-~g~v~~~S~sg~t~~~ep~~~~~l~n~~~~l 222 (742)
..++.+... ..++. ...+.... .+|++.|....... .| .++.++.+.++ .+|+.| ++.++++++..+
T Consensus 493 ~~~~~~~~~----~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~-~rf~t~-el~~l~~~~~~~ 566 (934)
T 3thx_A 493 QSTLISAAR----DLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNG-VKFTNS-KLTSLNEEYTKN 566 (934)
T ss_dssp HHHHHHHHH----HSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--C-EEEECT-THHHHHHHHTTT
T ss_pred HHHHHHHHH----HHCCCCCCEEEEEEECCCEEEEEEEECHHHCCCCCCCCEEEECCCCE-EEEECH-HHHHHHHHHHHH
T ss_conf 999999999----84898565279998164028999984265445788781899713573-999898-999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCEEECCCCCCCCCCEEEECCCCCCCC
Q ss_conf 699999999999999999995099999999999999999999978372--793400124799888762278806413421
Q 004609 223 SNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQW--MDGVCPILSSQSHVSFDSSINIEGIKHPLL 300 (742)
Q Consensus 223 ~~~e~~ee~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~--~~~~~P~~~~~~~~~~~~~i~l~~~rHPll 300 (742)
..++..++.+|+.+|+..+..+.+.+..+.+.+++||+++|+|.+|.. ++||+|.+++.+ +..+.++++|||++
T Consensus 567 ~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~----~~~i~i~~~rHP~l 642 (934)
T 3thx_A 567 KTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKG----QGRIILKASRHACV 642 (934)
T ss_dssp THHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTT----SCEEEEEEECCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC----CCCEEEECCCCCHH
T ss_conf 99999999999999999999999999999999999999999999998566898487000278----75407636756124
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 23100001124689998877789880898000221199200--1553002782399999079998104984487656544
Q 004609 301 LGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMS 378 (742)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la 378 (742)
+.. . ++.++ +++|.+..| ++++|+|||||||||+||++|++.+|+
T Consensus 643 e~~--~------------------------------~~~~v~ndisl~~~~g-~i~~ItGpNGsGKSTlLr~ial~~~~a 689 (934)
T 3thx_A 643 EVQ--D------------------------------EIAFIPNDVYFEKDKQ-MFHIITGPNMGGKSTYIRQTGVIVLMA 689 (934)
T ss_dssp TTC----------------------------------CCCCCEEEEEETTTB-CEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHC--C------------------------------CCEEECCCCEEECCCC-EEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 433--7------------------------------8606534533303797-189998889987779999999989987
Q ss_pred HHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 40623337999992499999998299300016625421999999999983699939998079999998989999999999
Q 004609 379 KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (742)
Q Consensus 379 ~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~ 458 (742)
|+|+++|+.+ ..++++++++.++|..+++.+++|+||+++++++.++..+++|+||||||||+||||.++.++++++++
T Consensus 690 q~G~~vpa~~-~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~ 768 (934)
T 3thx_A 690 QIGCFVPCES-AEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISE 768 (934)
T ss_dssp HHTCCBSEEE-EEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHH
T ss_pred HCCCCCCCCC-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 6288434423-300499999986381653877576667999999999984639919999699889999999999999999
Q ss_pred HHHC-CCCEEEEEECCHHHHHHCCCCCCEECCEEEE--ECCCCCCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9833-8948999925823651025453110645998--348532101210278899548899997799989999999999
Q 004609 459 YLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV 535 (742)
Q Consensus 459 ~l~~-~~~~viitTH~~~l~~~a~~~~~i~~~~~~~--~~~~l~~~Y~l~~g~~~~s~a~~ia~~~gl~~~vi~~A~~~~ 535 (742)
++.+ .++++|++|||+++..++++...+.|+++.+ +.+.+.++|++..|.++.||++.+|+.+|+|..|+++|+...
T Consensus 769 ~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~ 848 (934)
T 3thx_A 769 YIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKA 848 (934)
T ss_dssp HHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEECCCHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99856799999992737999873204000766999984488277888886688898649999998398999999999999
Q ss_pred HHHCHH
Q ss_conf 973102
Q 004609 536 ERLRPE 541 (742)
Q Consensus 536 ~~~~~~ 541 (742)
..++..
T Consensus 849 ~~le~~ 854 (934)
T 3thx_A 849 LELEEF 854 (934)
T ss_dssp HHTTTT
T ss_pred HHHHHC
T ss_conf 999712
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=1.00 E-value=1 Score=524.21 Aligned_cols=492 Identities=20% Similarity=0.260 Sum_probs=384.3
Q ss_pred CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCHHHHHHHHHC-CCC-----------------
Q ss_conf 926777304999999999999999999999999---87299999997377999999861-999-----------------
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM---MQSQPLDLSTIEDIAGILNSAVS-GQL----------------- 59 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~i~~~l~~~~e~~~~---~~~~~~~l~~~~Di~~~l~~~~~-g~~----------------- 59 (742)
||+|++++|+.+|..|.+.|..||+.++++.+- .....-.|.+++|+++++.|+.. |..
T Consensus 431 mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~ 510 (1022)
T 2o8b_B 431 FGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEET 510 (1022)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 64899999985746799999999999999983958999999997048668999999974277543334520233333331
Q ss_pred -CCHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH--------CCCCHHHHHHHHHHHHCC----C
Q ss_conf -999999999999---999999999998732004774224004999881--------499916899999511116----8
Q 004609 60 -LSPSEICAVRRT---LRAVNNVWKKLTEAAELDGDSLQRYSPLLELLK--------NCNFLTELEEKIGFCIDC----K 123 (742)
Q Consensus 60 -l~~~el~~i~~~---l~~~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~--------~l~~~~~l~~~I~~~id~----~ 123 (742)
.++.++.++... +..+..+...+..... . ..-+.|..+.. .++.+.++...|..+||. +
T Consensus 511 ~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~---~--~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~ 585 (1022)
T 2o8b_B 511 TYSKKKIIDFLSALEGFKVMCKIIGIMEEVAD---G--FKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARK 585 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---T--CCCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHC
T ss_conf 11544499999999999999999999986430---2--576999999974302444450779999999998728043411
Q ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEEECCCCCCC-CCCCEEEEEC
Q ss_conf 8812--5895988899999999779999999999999999936999-8660001681799870544567-9995899870
Q 004609 124 LLII--LDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGID-KPLITKRRSRMCVGIKASHKYL-LPDGIALNVS 199 (742)
Q Consensus 124 ~~~v--~d~aS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~i~~r~~r~~i~vk~~~~~~-~~~g~v~~~S 199 (742)
+|.+ ++++|++|+++|..++...+++.+++.+. ....++. ..+++.+++||+|+|+.++... +|+.|++.+|
T Consensus 586 ~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~----~~~~~~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t 661 (1022)
T 2o8b_B 586 TGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQ----RNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKST 661 (1022)
T ss_dssp SCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSS----GGGSSCSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEE
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCEEEEEE
T ss_conf 89674479999889999999999999999999999----99849986357874276699997445521558973488651
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCC
Q ss_conf 5883899333113212259999969999---999999999999999509999999999999999999997837--27934
Q 004609 200 SSGATYFMEPKGAVEFNNMEVRLSNSEI---AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ--WMDGV 274 (742)
Q Consensus 200 ~sg~t~~~ep~~~~~l~n~~~~l~~~e~---~ee~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~--~~~~~ 274 (742)
.+|.+.|++|. +++...++...+. ..+..+..++...+..+...+..+.+.++.||+++|+|.+|. ..+||
T Consensus 662 ~~~~~rf~t~e----l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~ 737 (1022)
T 2o8b_B 662 KKGCKRYWTKT----IEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMC 737 (1022)
T ss_dssp TTEEEECCTTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEE
T ss_pred CCCCCEEECHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 36850796157----88999999999999999999999999999999999999999999999999957999864367851
Q ss_pred CEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC-CCCEE--CCCCCCCC--
Q ss_conf 00124799888762278806413421231000011246899988777898808980002211-99200--15530027--
Q 004609 275 CPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGI-SDFPV--PIDIKVEC-- 349 (742)
Q Consensus 275 ~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~y-~~~~v--~vsl~l~~-- 349 (742)
+|.+++.. +....+.++++|||+|... | ++.++ +++|.+..
T Consensus 738 ~P~~~~~~--~~~~~l~i~~~rHP~l~~~--------------------------------~~~~~~v~ndi~l~~~~~~ 783 (1022)
T 2o8b_B 738 RPVILLPE--DTPPFLELKGSRHPCITKT--------------------------------FFGDDFIPNDILIGCEEEE 783 (1022)
T ss_dssp CCEECCTT--TSCCCEEEEEECCCC--------------------------------------CCCCCCEEEEESCCCSC
T ss_pred CCCCCCCC--CCCCEEEEEECCCCEEEEE--------------------------------ECCCCEEEEEEEECCCCCC
T ss_conf 77545677--9986399992625579999--------------------------------5589557544553355444
Q ss_pred -----CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -----823999990799981049844876565444062333799999249999999829930001662542199999999
Q 004609 350 -----ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424 (742)
Q Consensus 350 -----g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~ 424 (742)
| ++++|||||||||||+||++|++.+|+++|+|||+.. ..++++++|+.++|..+++..+.|+||++|++++.
T Consensus 784 ~~~~~g-~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~-~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~ 861 (1022)
T 2o8b_B 784 QENGKA-YCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEV-CRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS 861 (1022)
T ss_dssp C---CC-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSE-EEECCCSBEEEECC---------CHHHHHHHHHHH
T ss_pred CCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEECCCC-CCCCHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHH
T ss_conf 557788-4899988999986899999988999866268852676-77979999999769778886154332899999999
Q ss_pred HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHCCCCCCEECCEEEE---------E
Q ss_conf 998369993999807999999898999999999998338-948999925823651025453110645998---------3
Q 004609 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEF---------S 494 (742)
Q Consensus 425 i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~-~~~viitTH~~~l~~~a~~~~~i~~~~~~~---------~ 494 (742)
|+.++++|+||||||||+|||+.+|.++++++++++.+. ++++|++|||+++.........+.+++|.+ +
T Consensus 862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~ 941 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPS 941 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC---------
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCEEECCEEEEEEECCCCCCC
T ss_conf 99748899689997998889867899999999999986479989999698999998578543152769999705723378
Q ss_pred CCCCCCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 48532101210278899548899997799989999999999973102
Q 004609 495 LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPE 541 (742)
Q Consensus 495 ~~~l~~~Y~l~~g~~~~s~a~~ia~~~gl~~~vi~~A~~~~~~~~~~ 541 (742)
.+.+.++|++..|.++.|||+.+|+.+|+|..|+++|+.+...++..
T Consensus 942 ~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~~ 988 (1022)
T 2o8b_B 942 QETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKM 988 (1022)
T ss_dssp ----CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTSS
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 77358885324799998799999998097999999999999999978
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=218.60 Aligned_cols=168 Identities=21% Similarity=0.242 Sum_probs=141.1
Q ss_pred CEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHHH---------------------HHHC
Q ss_conf 0898000221199200--155300278239999907999810498448-765654---------------------4406
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (742)
Q Consensus 326 ~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~l---------------------a~~G 381 (742)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPG-EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEEEEEEECCEEEEEEEEEEECCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCHHHCCE
T ss_conf 899996999989988897538999599-8999999998059999999966998997389999999754556655410888
Q ss_pred EEECCCCCC--CCHH---------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEEEE
Q ss_conf 233379999--9249---------------------99999982993000166254219999-99999983699939998
Q 004609 382 LYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 382 ~~vpa~~~~--~i~~---------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~LiLL 437 (742)
.++||.... .+.+ +++++..+|..+..++.+++|||||+ |++++++++.+|.++||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL 162 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99907875789999999999999876998689999999999886990375589245799999999999999739999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEE
Q ss_conf 07999999898999999999998338948999925823-6510254531106459983
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~ 494 (742)
|||++++|+..+..+...+.+...+.+.++|++|||.+ ...+++++..+.+|.+...
T Consensus 163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 6974367999999999999999985799899994999999987999999989989998
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=216.69 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=138.3
Q ss_pred CEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHHH-----------------HHHCEEEC
Q ss_conf 0898000221199200--155300278239999907999810498448-765654-----------------44062333
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (742)
Q Consensus 326 ~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~l-----------------a~~G~~vp 385 (742)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEEEEEEECCEEEEEEEEEEECCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
T ss_conf 899984899989999996568998799-8999996899559999999976998897199999999987997788889990
Q ss_pred CCCCC--CCHH---------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEEEECCCC
Q ss_conf 79999--9249---------------------99999982993000166254219999-999999836999399980799
Q 004609 386 AKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 386 a~~~~--~i~~---------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~LiLLDEp~ 441 (742)
|.... .+.+ ++.++..+|..+..++.+++|||||+ |++++++++.+|.++|||||+
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 68757899999999999997759998999999999998859941653992579999999999999998199999998987
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEE
Q ss_conf 9999898999999999998338948999925823-6510254531106459983
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 442 ~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~ 494 (742)
+++|+..+..+...+.+...+.+.++|++||+.+ ...+++++..+.+|.+...
T Consensus 162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 679999999999999999986798899998899999986999999989989998
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=1.00 E-value=1 Score=215.96 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=137.6
Q ss_pred CEEEEEEEEECCC-C-EE-CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH---------------------HHHH
Q ss_conf 0898000221199-2-00-155300278239999907999810498448-76565---------------------4440
Q 004609 326 EMTVGSLSKGISD-F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA 380 (742)
Q Consensus 326 ~l~~~~i~~~y~~-~-~v-~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~---------------------la~~ 380 (742)
.++++|+++.|++ . .+ ++||++.+| ++++|+||||||||||+|++ |++.+ +.+.
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~G-e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRG-EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETT-SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCCCEEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCHHHHHCC
T ss_conf 7999878999799886787407999189-899999999987999999997699899749999999887653208998275
Q ss_pred CEEECCCCC---CCCHH---------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEE
Q ss_conf 623337999---99249---------------------99999982993000166254219999-999999836999399
Q 004609 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 381 G~~vpa~~~---~~i~~---------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~Li 435 (742)
..|+|+... ....+ ++.++..+|..+..++.+++|||||+ |++++++++.+|.++
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lL 165 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 165 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 79997175310254819999998998769998999999999999759904553890109999999999999997499999
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 98079999998989999999999983-38948999925823-65102545311064599834
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 436 LLDEp~~glDp~~g~aL~~all~~l~-~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
||||||+|+||.....+.. ++..+. +.+.++|++||+.+ +..+++++..+.+|.+.++.
T Consensus 166 lLDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g 226 (275)
T 3gfo_A 166 ILDEPTAGLDPMGVSEIMK-LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226 (275)
T ss_dssp EEECTTTTCCHHHHHHHHH-HHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 9989611489999999999-999998637999999946999999969999999899999977
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=214.82 Aligned_cols=169 Identities=15% Similarity=0.157 Sum_probs=138.8
Q ss_pred CCCEEEEEEEEECCC----CE-E-CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH--------------------
Q ss_conf 880898000221199----20-0-155300278239999907999810498448-76565--------------------
Q 004609 324 NSEMTVGSLSKGISD----FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------- 376 (742)
Q Consensus 324 ~~~l~~~~i~~~y~~----~~-v-~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-------------------- 376 (742)
...++++|+++.|+. .. + ++||++.+| ++++|+||||||||||||++ |+..+
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~G-ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCEEEEEEEEEEECCCCCCEEEEEEEEEEECCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHH
T ss_conf 865999848999389887737887469998489-8999995899559999999966999996299999999875898799
Q ss_pred --HHHHCEEECCCCCC--CCHH---------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCC
Q ss_conf --44406233379999--9249---------------------99999982993000166254219999-9999998369
Q 004609 377 --MSKAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 377 --la~~G~~vpa~~~~--~i~~---------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~ 430 (742)
..+...++|+.... .+.+ ++.++..+|..+..++.+++|||||+ |++++++++.
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 98738689992787568888999999999986599878999999999997699347619945589999999999999966
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEE
Q ss_conf 9939998079999998989999999999983-38948999925823-6510254531106459983
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 431 ~~~LiLLDEp~~glDp~~g~aL~~all~~l~-~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~ 494 (742)
+|.++||||||+++||.....+.. ++..+. +.+.|+|++||+.+ +..++++...+.+|.+..+
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~-lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~ 245 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 999999979875689999999999-99999973799999995689999996999999989989997
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=1.00 E-value=1 Score=214.64 Aligned_cols=168 Identities=14% Similarity=0.166 Sum_probs=137.6
Q ss_pred CEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-------------------HHHHCEE
Q ss_conf 0898000221199200--155300278239999907999810498448-76565-------------------4440623
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (742)
Q Consensus 326 ~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-------------------la~~G~~ 383 (742)
.++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||++ |++.+ +++...+
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASG-EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEEEEEEEECCEEEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHEEEE
T ss_conf 699986999959956787658998699-8999999999859999999966998887389999999775998998530899
Q ss_pred ECCCCCC--CCHH-------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCC------CCCEE
Q ss_conf 3379999--9249-------------------99999982993000166254219999-9999998369------99399
Q 004609 384 LPAKNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------RESLV 435 (742)
Q Consensus 384 vpa~~~~--~i~~-------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~------~~~Li 435 (742)
+|+.... .+++ ++.++..+|..+..++.+++|||||+ |++++++++. +|.++
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lL 169 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWL 169 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEE
T ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 92377567897999999855420685779999999998759855755992407899999999999996644568899999
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 980799999989899999999999833-8948999925823-65102545311064599834
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 436 LLDEp~~glDp~~g~aL~~all~~l~~-~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
||||||+|+||.....+.. ++..+.+ .+.++|++||+.+ +..++++...+.+|.+..+.
T Consensus 170 llDEPts~LD~~~~~~i~~-~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 170 FLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp EECCCCSSCCHHHHHHHHH-HHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 9839644699999999999-999999738989999976989999868999999899899986
Done!