Your job contains 1 sequence.
>004610
MASSLTVNTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRN
TQAKLSTTETEHETSTVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKN
FAFLKSREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKG
SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA
VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRF
DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS
EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP
RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL
HKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKG
KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLD
YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ
PVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTF
QLLGNDFFPRWKERHQVSESLL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004610
(742 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2045432 - symbol:PRORP1 "proteinaceous RNase P... 980 5.3e-117 2
TAIR|locus:2059824 - symbol:PRORP2 "proteinaceous RNase P... 744 2.8e-84 2
TAIR|locus:2141662 - symbol:PRORP3 "AT4G21900" species:37... 719 5.8e-82 2
TAIR|locus:2175178 - symbol:AT5G60430 species:3702 "Arabi... 173 4.7e-12 1
TAIR|locus:2026192 - symbol:RPF2 "rna processing factor 2... 132 5.2e-05 1
TAIR|locus:2065428 - symbol:AT2G01740 "AT2G01740" species... 126 0.00020 1
TAIR|locus:2197424 - symbol:EMB3103 "EMBRYO DEFECTIVE 310... 105 0.00062 2
UNIPROTKB|O15091 - symbol:KIAA0391 "Mitochondrial ribonuc... 112 0.00067 2
RGD|1305089 - symbol:RGD1305089 "similar to 1110008L16Rik... 111 0.00087 3
>TAIR|locus:2045432 [details] [associations]
symbol:PRORP1 "proteinaceous RNase P 1" species:3702
"Arabidopsis thaliana" [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006855 "drug transmembrane transport"
evidence=IEA] [GO:0015238 "drug transmembrane transporter activity"
evidence=IEA] [GO:0015297 "antiporter activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0055085 "transmembrane
transport" evidence=IEA] [GO:0004526 "ribonuclease P activity"
evidence=IMP;IDA] [GO:0008033 "tRNA processing" evidence=IDA]
[GO:0009507 "chloroplast" evidence=IDA] InterPro:IPR002885
GO:GO:0005739 GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008033 PROSITE:PS51375 EMBL:AC006223 Pfam:PF01535
Pfam:PF13812 eggNOG:NOG68490 GO:GO:0004526 EMBL:AY091059
EMBL:BT015418 IPI:IPI00540508 PIR:E84730 RefSeq:NP_850186.1
UniGene:At.38106 PDB:4G23 PDB:4G24 PDB:4G25 PDB:4G26 PDBsum:4G23
PDBsum:4G24 PDBsum:4G25 PDBsum:4G26 ProteinModelPortal:Q66GI4
PaxDb:Q66GI4 PRIDE:Q66GI4 EnsemblPlants:AT2G32230.1 GeneID:817782
KEGG:ath:AT2G32230 GeneFarm:4941 TAIR:At2g32230
HOGENOM:HOG000006117 InParanoid:Q66GI4 OMA:KLDMCSK PhylomeDB:Q66GI4
ProtClustDB:CLSN2679969 Genevestigator:Q66GI4 Uniprot:Q66GI4
Length = 572
Score = 980 (350.0 bits), Expect = 5.3e-117, Sum P(2) = 5.3e-117
Identities = 192/382 (50%), Positives = 254/382 (66%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENXXXXXXXXXXXXX 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + +
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 XXXIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHT 719
P NRAL+EKWKNA ALYATP GSNDD YWLYAA+ KCLLVTNDEMRDH
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDW---------YWLYAAVSCKCLLVTNDEMRDHL 499
Query: 720 FQLLGNDFFPRWKERHQVSESL 741
FQLLGN FFPRWKE+HQV S+
Sbjct: 500 FQLLGNSFFPRWKEKHQVRISV 521
Score = 193 (73.0 bits), Expect = 5.3e-117, Sum P(2) = 5.3e-117
Identities = 41/86 (47%), Positives = 56/86 (65%)
Query: 178 EKGSKKSKK---DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
E S+K+KK +S + L+ +LDMCSK+GDV+ A+RLYD+A+R G++L QYHYNVLLY
Sbjct: 81 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY 140
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFE 260
+CS A G R D F+
Sbjct: 141 VCSLAEAATESSPNPGLS-RGFDIFK 165
Score = 37 (18.1 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLD 381
LS AKK A Q+ E K LD
Sbjct: 83 LSRKAKKKAIQQSPEALLKQKLD 105
>TAIR|locus:2059824 [details] [associations]
symbol:PRORP2 "proteinaceous RNase P 2" species:3702
"Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
[GO:0016020 "membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0001682 "tRNA 5'-leader removal" evidence=IDA]
[GO:0004526 "ribonuclease P activity" evidence=IDA] [GO:0006397
"mRNA processing" evidence=IMP] [GO:0043144 "snoRNA processing"
evidence=IMP] GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006397 EMBL:AC005825 PROSITE:PS51375 GO:GO:0043144
InterPro:IPR021869 Pfam:PF11977 eggNOG:NOG68490 GO:GO:0004526
GO:GO:0001682 HOGENOM:HOG000006117 EMBL:AK175948 IPI:IPI00545620
IPI:IPI00657270 PIR:E84542 RefSeq:NP_179256.3 UniGene:At.29161
ProteinModelPortal:Q680B9 PaxDb:Q680B9 PRIDE:Q680B9
EnsemblPlants:AT2G16650.1 GeneID:816166 KEGG:ath:AT2G16650
TAIR:At2g16650 InParanoid:Q680B9 OMA:EIQESEM PhylomeDB:Q680B9
ProtClustDB:CLSN2681692 Genevestigator:Q680B9 Uniprot:Q680B9
Length = 528
Score = 744 (267.0 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 159/386 (41%), Positives = 228/386 (59%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G ++ PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T +I +WF ++A +G ++++ + N
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVT 711
R+ ++ P +R L+E+W + LYATP GSNDD YWLYAA K KCLLVT
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDW---------YWLYAAAKLKCLLVT 438
Query: 712 NDEMRDHTFQLLGNDFFPRWKERHQV 737
NDEMRDH F+LLG+ FF +WKERHQV
Sbjct: 439 NDEMRDHIFELLGSTFFQKWKERHQV 464
Score = 119 (46.9 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 167 SGQYKVRGITDEKGS---KKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-I 222
S Q++ R DE S KK K R+ + L L+ CSK D+ A+ LYD A +
Sbjct: 4 SDQHRSRR-HDESSSRPNKKKKVSRNPETNLLFNLNSCSKSKDLSAALALYDAAITSSEV 62
Query: 223 KLGQYHYNVLLYLCSSAAVGV 243
+L Q H+ LLYLCS++ +
Sbjct: 63 RLSQQHFQTLLYLCSASITDI 83
Score = 49 (22.3 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 9/51 (17%), Positives = 29/51 (56%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414
+K ++G+E+ E M + + EA ++A+ +++ + G + + + +++
Sbjct: 158 EKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
>TAIR|locus:2141662 [details] [associations]
symbol:PRORP3 "AT4G21900" species:3702 "Arabidopsis
thaliana" [GO:0005215 "transporter activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0016020 "membrane"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0001682
"tRNA 5'-leader removal" evidence=IDA] [GO:0004526 "ribonuclease P
activity" evidence=IDA] [GO:0006397 "mRNA processing" evidence=IMP]
[GO:0043144 "snoRNA processing" evidence=IMP] GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006397 EMBL:AL161556
PROSITE:PS51375 EMBL:AL021890 GO:GO:0043144 InterPro:IPR021869
Pfam:PF11977 eggNOG:NOG68490 GO:GO:0004526 GO:GO:0001682
HOGENOM:HOG000006117 EMBL:AK226669 EMBL:AK230440 IPI:IPI00543150
IPI:IPI00892032 PIR:T05472 RefSeq:NP_193921.2 UniGene:At.74070
ProteinModelPortal:F4JKB6 PRIDE:F4JKB6 EnsemblPlants:AT4G21900.1
GeneID:828279 KEGG:ath:AT4G21900 TAIR:At4g21900 OMA:SCEPMAD
Uniprot:F4JKB6
Length = 576
Score = 719 (258.2 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 159/386 (41%), Positives = 224/386 (58%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G ++ PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T+ I +WF +A+ + L++ +
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NS-----SFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R+ NS F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVT 711
R+ ++ P +R L+E+W N + LYATP GSNDD YWLYAA K KCLLVT
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDW---------YWLYAAAKLKCLLVT 497
Query: 712 NDEMRDHTFQLLGNDFFPRWKERHQV 737
NDEMRDH F+LL N FF +WKERHQV
Sbjct: 498 NDEMRDHIFELLSNSFFQKWKERHQV 523
Score = 122 (48.0 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 181 SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKA-QREGIKLGQYHYNVLLYLCSS 238
+KK K +R+ + L + L CSKR D+ A+ LYD A I+L Q H+ LLYLCS+
Sbjct: 79 NKKKKGNRNPEKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSA 137
>TAIR|locus:2175178 [details] [associations]
symbol:AT5G60430 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0006855 "drug
transmembrane transport" evidence=IEA] [GO:0015238 "drug
transmembrane transporter activity" evidence=IEA] [GO:0015297
"antiporter activity" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0055085 "transmembrane transport" evidence=IEA]
EMBL:CP002688 EMBL:AB011483 eggNOG:NOG68490 IPI:IPI00517211
RefSeq:NP_001032110.1 RefSeq:NP_200851.1 UniGene:At.49199
ProteinModelPortal:Q9FKK3 PaxDb:Q9FKK3 EnsemblPlants:AT5G60430.1
EnsemblPlants:AT5G60430.2 GeneID:836164 KEGG:ath:AT5G60430
TAIR:At5g60430 InParanoid:Q9FKK3 PhylomeDB:Q9FKK3
ProtClustDB:CLSN2686686 ArrayExpress:Q9FKK3 Genevestigator:Q9FKK3
Uniprot:Q9FKK3
Length = 156
Score = 173 (66.0 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NSS-----FQKF 595
IV V C C E+LA +D + +ET+KF +S+ ++A++R+ NS F +F
Sbjct: 25 IVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVFSEF 84
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNF 622
Q WL+ +G +EA+VD AN+GLY Q+NF
Sbjct: 85 QDWLEKHGDYEAIVDGANIGLY-QQNF 110
>TAIR|locus:2026192 [details] [associations]
symbol:RPF2 "rna processing factor 2" species:3702
"Arabidopsis thaliana" [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0000966 "RNA 5'-end processing" evidence=IMP]
[GO:0003723 "RNA binding" evidence=IDA] InterPro:IPR011990
InterPro:IPR002885 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005739 GO:GO:0003723 Gene3D:1.25.40.10 PROSITE:PS51375
EMBL:AC007190 TIGRFAMs:TIGR00756 EMBL:AC005698 GO:GO:0000966
eggNOG:NOG320495 HOGENOM:HOG000015176 ProtClustDB:CLSN2682329
Pfam:PF12854 Pfam:PF13041 IPI:IPI00518837 RefSeq:NP_176454.1
UniGene:At.65045 ProteinModelPortal:Q9SXD1 SMR:Q9SXD1 STRING:Q9SXD1
PaxDb:Q9SXD1 PRIDE:Q9SXD1 EnsemblPlants:AT1G62670.1 GeneID:842564
KEGG:ath:AT1G62670 GeneFarm:4355 TAIR:At1g62670 InParanoid:Q9SXD1
OMA:ADEMMER PhylomeDB:Q9SXD1 ArrayExpress:Q9SXD1
Genevestigator:Q9SXD1 Uniprot:Q9SXD1
Length = 630
Score = 132 (51.5 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 80/349 (22%), Positives = 154/349 (44%)
Query: 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCS----SAAVGVVKPAKSGSGMR 254
+C KRGD A L +K ++ ++ G YN ++ LC A+ + K ++ G+R
Sbjct: 231 LC-KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET-KGIR 288
Query: 255 TLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314
+ S++ S R D + L S MI++ + + F L F ++ L
Sbjct: 289 P-NVVTYSSLISCLCNYGRWSDASRLL----SDMIERKINPDVFTFSALIDAFVKEGKLV 343
Query: 315 QFSNGHMKLNSQLLDGR----SNLERG---PD--DQSRKK-DWSIDNQDADEI----RLS 360
+ + ++ + +D S+L G D D++++ ++ + ++ L
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403
Query: 361 EDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+ KY + G E++ +M + N + + + GD DMA ++ K M S G+
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P + +Y L C NG ++KA V E++ + P ++ +AGK + + L
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAA--RLGKKKWNESLIKDTMEN 526
L S++ V P DV+A +N+ + R G K+ ++L K+ E+
Sbjct: 524 FCNL--SLKGVKP---DVVA--YNTMISGFCRKGSKEEADALFKEMKED 565
>TAIR|locus:2065428 [details] [associations]
symbol:AT2G01740 "AT2G01740" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR011990 InterPro:IPR002885 EMBL:CP002685
GenomeReviews:CT485783_GR Gene3D:1.25.40.10 PROSITE:PS51375
EMBL:AC006069 Pfam:PF01535 TIGRFAMs:TIGR00756 Pfam:PF12854
Pfam:PF13041 IPI:IPI00529210 PIR:E84428 RefSeq:NP_178283.1
UniGene:At.47033 UniGene:At.66449 ProteinModelPortal:Q9ZUA2
SMR:Q9ZUA2 EnsemblPlants:AT2G01740.1 GeneID:814704
KEGG:ath:AT2G01740 GeneFarm:5003 TAIR:At2g01740 eggNOG:NOG248754
HOGENOM:HOG000241911 InParanoid:Q9ZUA2 OMA:LDITAYG PhylomeDB:Q9ZUA2
ProtClustDB:CLSN2683545 Genevestigator:Q9ZUA2 Uniprot:Q9ZUA2
Length = 559
Score = 126 (49.4 bits), Expect = 0.00020, P = 0.00020
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 245 KKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDIT 304
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HKL
Sbjct: 305 AYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKL 364
>TAIR|locus:2197424 [details] [associations]
symbol:EMB3103 "EMBRYO DEFECTIVE 3103" species:3702
"Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR002885 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009507 PROSITE:PS51375 EMBL:U95973 Pfam:PF01535
TIGRFAMs:TIGR00756 EMBL:AK226637 IPI:IPI00545549 PIR:H86242
RefSeq:NP_172560.2 UniGene:At.49873 ProteinModelPortal:Q0WVV0
SMR:Q0WVV0 PRIDE:Q0WVV0 EnsemblPlants:AT1G10910.1 GeneID:837634
KEGG:ath:AT1G10910 GeneFarm:4823 TAIR:At1g10910 eggNOG:NOG273187
HOGENOM:HOG000082904 InParanoid:Q0WVV0 OMA:MLRYSKR PhylomeDB:Q0WVV0
ProtClustDB:CLSN2691508 Genevestigator:Q0WVV0 Uniprot:Q0WVV0
Length = 664
Score = 105 (42.0 bits), Expect = 0.00063, Sum P(2) = 0.00062
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K + + E+ ++ + + M+ V + S G + A + +++MK G +P +
Sbjct: 215 KNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYH 274
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y L+ + GD KA + M G+ P + + LL+V ++ G DR LL +L
Sbjct: 275 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 334
Query: 485 TS 486
++
Sbjct: 335 SA 336
Score = 65 (27.9 bits), Expect = 0.00063, Sum P(2) = 0.00062
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVK 245
K G + I+L+D+ +R+G+K YN LL C G K
Sbjct: 178 KNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPK 220
>UNIPROTKB|O15091 [details] [associations]
symbol:KIAA0391 "Mitochondrial ribonuclease P protein 3"
species:9606 "Homo sapiens" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
GO:GO:0005739 EMBL:CH471078 GO:GO:0008033 EMBL:AB002389
EMBL:BX161394 EMBL:BX161487 EMBL:AK301931 EMBL:AK303508
EMBL:AK304066 EMBL:AL121594 EMBL:BC032221 EMBL:BC044580
IPI:IPI00004584 IPI:IPI00647491 IPI:IPI00915794 IPI:IPI00915950
RefSeq:NP_001243607.1 RefSeq:NP_001243608.1 RefSeq:NP_001243609.1
RefSeq:NP_001243610.1 RefSeq:NP_055487.2 UniGene:Hs.458487
UniGene:Hs.739309 ProteinModelPortal:O15091 IntAct:O15091
STRING:O15091 PhosphoSite:O15091 PaxDb:O15091 PRIDE:O15091
Ensembl:ENST00000557565 GeneID:9692 KEGG:hsa:9692 UCSC:uc001wsy.1
UCSC:uc001wsz.1 UCSC:uc001wtc.1 CTD:9692 GeneCards:GC14P035591
GeneCards:GC14P035592 H-InvDB:HIX0018405 H-InvDB:HIX0079614
HGNC:HGNC:19958 HPA:HPA020459 MIM:609947 neXtProt:NX_O15091
PharmGKB:PA134879499 eggNOG:NOG68490 HOVERGEN:HBG099441 OMA:LRDHKAC
OrthoDB:EOG4DBTFD PhylomeDB:O15091 ChiTaRS:KIAA0391 GenomeRNAi:9692
NextBio:36401 ArrayExpress:O15091 Bgee:O15091 CleanEx:HS_KIAA0391
Genevestigator:O15091 GermOnline:ENSG00000100890 InterPro:IPR026318
PANTHER:PTHR13547 Uniprot:O15091
Length = 583
Score = 112 (44.5 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 47/203 (23%), Positives = 82/203 (40%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
TTV C CG+ + I L P E E + I ++ ++F+ ++
Sbjct: 340 TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIK 399
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
PF+ V+D NV + F R + ++ + + + L+VL + + + Q
Sbjct: 400 SRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVLGRKHML-RRSSQ 454
Query: 661 PVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKF--KCLLVTNDEMRDH 718
+ E K A +A DD + D+ + LYA + C +T D MRDH
Sbjct: 455 WSRDEMEEVQKQASCFFA------DDISEDDP----FLLYATLHSGNHCRFITRDLMRDH 504
Query: 719 TFQLLG---NDFFPRWKERHQVS 738
L F +W++ HQ++
Sbjct: 505 KACLPDAKTQRLFFKWQQGHQLA 527
Score = 56 (24.8 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD--- 474
I P ++Y + + DV+ A ++ + +L H + P L+A + K D
Sbjct: 240 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI-KDDNYS 298
Query: 475 -RVYYLLHKLRTSVRKVSPSTADVIAKWFNS 504
++ +L LR + S A I WF S
Sbjct: 299 NKLLDILSYLRNNQLYPGESFAHSIKTWFES 329
>RGD|1305089 [details] [associations]
symbol:RGD1305089 "similar to 1110008L16Rik protein"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
RGD:1305089 GO:GO:0005739 GO:GO:0008033 EMBL:CH473947
eggNOG:NOG68490 HOVERGEN:HBG099441 OMA:LRDHKAC OrthoDB:EOG4DBTFD
InterPro:IPR026318 PANTHER:PTHR13547 GeneTree:ENSGT00390000002201
HOGENOM:HOG000294131 EMBL:BC168878 IPI:IPI00367164
RefSeq:NP_001100200.1 UniGene:Rn.35652 PRIDE:B5DF07
Ensembl:ENSRNOT00000009304 GeneID:299050 KEGG:rno:299050
UCSC:RGD:1305089 CTD:299050 NextBio:644711 Genevestigator:B5DF07
Uniprot:B5DF07
Length = 587
Score = 111 (44.1 bits), Expect = 0.00088, Sum P(3) = 0.00087
Identities = 48/203 (23%), Positives = 81/203 (39%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
TT+ C CG + I L P E E E++ I K+ ++F++++
Sbjct: 340 TTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERFVK 399
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
PF+ V+D NV + F R + + GI + + L+VL + + Q
Sbjct: 400 SCPPFDIVIDGLNVA----KMFPKGRESQNLLGIVSQLAQQNLQLLVLGRKHML-RPSSQ 454
Query: 661 PVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKF--KCLLVTNDEMRDH 718
+ + K A +A S DD + LYA + C +T D +RDH
Sbjct: 455 WRKDEMEQVRKQAHCFFADNI-SEDD---------PFLLYATLNSGSHCKFITKDLLRDH 504
Query: 719 TFQL---LGNDFFPRWKERHQVS 738
L F +W++ HQ++
Sbjct: 505 KACLPDARAQRLFFKWQQGHQLA 527
Score = 53 (23.7 bits), Expect = 0.00088, Sum P(3) = 0.00087
Identities = 27/135 (20%), Positives = 55/135 (40%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
++YE M + T + R + A +++ +K + + P ++YG +
Sbjct: 196 DVYEIMKAKYKSLESGGYTLLIRGLIHSDRWREALLLLEDIKKVMV-PSKKNYGDCIQGA 254
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRVYYLLHKLRTSVRK 489
+ DV+ A S+ + ++ H + P L+A + +++ +L LR +
Sbjct: 255 LLHQDVNVAWSLYQELVGHNLIPLLETLKAFFDHGKDMNDDQYSNQLLDILLYLRNNQLY 314
Query: 490 VSPSTADVIAKWFNS 504
S A I WF S
Sbjct: 315 PGESFAHSIKTWFES 329
Score = 44 (20.5 bits), Expect = 0.00088, Sum P(3) = 0.00087
Identities = 32/141 (22%), Positives = 49/141 (34%)
Query: 109 KRLTKDNNSRKNFAFLKSREMSSGNSSLRXXXXXXXXXXXXTVNREV------DNQKMEQ 162
K T N+ N K+R + GN S + + NQ
Sbjct: 50 KPTTPPNSKILNLLVTKARTLKKGNDSNKQASSGPHYFAAGEAKKRSHLSGNPQNQGHTL 109
Query: 163 RTNDSGQYKVRGITDEKGSKKSK----KDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQ 218
+ Q + + E+ K + K E F + CS DV ++ + A+
Sbjct: 110 PVKSTVQLPTKPLNSEEWDKLKEDFKGKASFEDFVISQMTRSCSSV-DVAKSLLAWVAAK 168
Query: 219 REGIKLGQYHYNVL---LYLC 236
GI +G YN+L LYLC
Sbjct: 169 NNGI-VG---YNLLVKYLYLC 185
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 742 689 0.00080 121 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 621 (66 KB)
Total size of DFA: 368 KB (2182 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 61.07u 0.10s 61.17t Elapsed: 00:00:03
Total cpu time: 61.07u 0.10s 61.17t Elapsed: 00:00:03
Start: Tue May 21 03:49:10 2013 End: Tue May 21 03:49:13 2013