Query 004610
Match_columns 742
No_of_seqs 585 out of 3413
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.3E-50 7.1E-55 484.1 31.7 505 149-703 473-1023(1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.2E-50 7E-55 484.1 27.5 355 146-556 435-800 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.2E-45 2.6E-50 438.7 24.6 302 146-483 156-488 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 6.8E-46 1.5E-50 450.7 21.9 404 159-607 130-589 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.6E-44 3.4E-49 429.1 28.4 417 150-636 89-556 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 2.1E-43 4.6E-48 428.9 24.1 351 146-559 251-640 (857)
7 PF11977 RNase_Zc3h12a: Zc3h12 99.8 1.2E-20 2.7E-25 180.8 0.5 122 606-742 4-135 (155)
8 PRK11788 tetratricopeptide rep 99.6 3.5E-14 7.5E-19 157.3 24.5 285 162-486 47-347 (389)
9 PRK11788 tetratricopeptide rep 99.5 4.6E-13 1E-17 148.3 22.2 270 200-502 44-326 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.4 6.2E-11 1.3E-15 144.2 30.0 283 192-511 602-891 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.4 1.8E-10 4E-15 140.0 30.3 262 192-486 466-732 (899)
12 PF13041 PPR_2: PPR repeat fam 99.4 1.3E-12 2.8E-17 100.2 6.3 49 385-433 1-49 (50)
13 PF13041 PPR_2: PPR repeat fam 99.4 1.7E-12 3.6E-17 99.6 6.8 49 189-237 1-49 (50)
14 KOG4422 Uncharacterized conser 99.3 7.4E-10 1.6E-14 116.6 21.6 288 192-504 117-445 (625)
15 KOG4422 Uncharacterized conser 99.2 5E-09 1.1E-13 110.5 24.3 263 192-486 208-551 (625)
16 KOG4318 Bicoid mRNA stability 99.0 3E-09 6.5E-14 120.8 12.4 256 171-473 11-287 (1088)
17 PRK15174 Vi polysaccharide exp 98.9 1E-06 2.2E-11 104.4 31.4 290 159-486 51-347 (656)
18 PRK15174 Vi polysaccharide exp 98.8 4.8E-06 1E-10 98.7 29.7 281 162-486 88-381 (656)
19 PF12854 PPR_1: PPR repeat 98.7 1.4E-08 2.9E-13 70.9 4.1 32 382-413 2-33 (34)
20 PF12854 PPR_1: PPR repeat 98.7 1.8E-08 3.8E-13 70.3 3.8 32 417-448 2-33 (34)
21 KOG4318 Bicoid mRNA stability 98.6 6.1E-07 1.3E-11 102.5 15.9 242 212-506 11-286 (1088)
22 TIGR00990 3a0801s09 mitochondr 98.6 1.3E-05 2.9E-10 94.6 27.6 254 164-486 308-571 (615)
23 PF13429 TPR_15: Tetratricopep 98.6 2.7E-07 6E-12 97.7 10.6 255 161-484 19-275 (280)
24 TIGR02521 type_IV_pilW type IV 98.5 5.6E-05 1.2E-09 75.9 25.9 201 191-486 31-232 (234)
25 PRK10747 putative protoheme IX 98.4 3.3E-05 7.2E-10 86.1 23.7 276 163-483 97-387 (398)
26 PRK11447 cellulose synthase su 98.4 7E-05 1.5E-09 94.7 27.7 295 159-486 360-700 (1157)
27 TIGR00990 3a0801s09 mitochondr 98.4 9.3E-05 2E-09 87.4 27.0 301 160-486 137-496 (615)
28 PF13429 TPR_15: Tetratricopep 98.4 2.8E-06 6.2E-11 89.9 12.4 229 196-486 13-243 (280)
29 PRK10049 pgaA outer membrane p 98.4 0.00014 2.9E-09 88.1 28.3 288 160-486 59-388 (765)
30 TIGR00540 hemY_coli hemY prote 98.4 8.5E-05 1.8E-09 83.2 24.5 281 162-483 96-396 (409)
31 PRK10049 pgaA outer membrane p 98.2 0.00089 1.9E-08 81.1 30.8 291 159-486 92-422 (765)
32 COG2956 Predicted N-acetylgluc 98.2 0.00042 9E-09 71.9 23.3 134 358-493 147-285 (389)
33 PRK11447 cellulose synthase su 98.2 0.00059 1.3E-08 86.5 29.5 253 160-485 471-739 (1157)
34 KOG4626 O-linked N-acetylgluco 98.1 0.00019 4.2E-09 79.7 19.7 281 159-484 125-415 (966)
35 TIGR00756 PPR pentatricopeptid 98.1 3.1E-06 6.8E-11 58.8 4.1 35 192-226 1-35 (35)
36 PRK09782 bacteriophage N4 rece 98.1 0.00076 1.7E-08 82.8 26.4 230 190-486 476-706 (987)
37 TIGR02521 type_IV_pilW type IV 98.1 0.0014 2.9E-08 65.7 23.9 192 159-450 40-231 (234)
38 PF13812 PPR_3: Pentatricopept 98.1 5E-06 1.1E-10 57.6 4.1 33 192-224 2-34 (34)
39 TIGR00756 PPR pentatricopeptid 98.1 6.9E-06 1.5E-10 57.0 4.7 33 424-456 2-34 (35)
40 PRK14574 hmsH outer membrane p 98.0 0.0016 3.5E-08 78.4 27.3 288 160-486 112-445 (822)
41 PRK14574 hmsH outer membrane p 98.0 0.0018 3.9E-08 78.0 26.5 283 160-485 44-395 (822)
42 PF13812 PPR_3: Pentatricopept 98.0 9.9E-06 2.2E-10 56.1 4.1 32 389-420 3-34 (34)
43 PRK09782 bacteriophage N4 rece 97.9 0.0026 5.6E-08 78.2 26.0 217 164-452 490-707 (987)
44 PRK10747 putative protoheme IX 97.8 0.0018 3.8E-08 72.3 21.7 219 159-449 162-388 (398)
45 PF01535 PPR: PPR repeat; Int 97.8 2.4E-05 5.2E-10 52.8 3.2 31 192-222 1-31 (31)
46 PF12569 NARP1: NMDA receptor- 97.8 0.021 4.5E-07 65.4 28.6 298 158-486 12-334 (517)
47 PRK12370 invasion protein regu 97.8 0.0036 7.9E-08 72.9 23.2 213 165-449 276-500 (553)
48 KOG1126 DNA-binding cell divis 97.8 0.006 1.3E-07 69.0 23.5 277 165-486 334-620 (638)
49 PRK12370 invasion protein regu 97.7 0.0028 6E-08 73.9 22.0 89 358-449 378-468 (553)
50 KOG1840 Kinesin light chain [C 97.7 0.0073 1.6E-07 68.4 23.8 241 159-484 208-477 (508)
51 PF01535 PPR: PPR repeat; Int 97.7 4.4E-05 9.5E-10 51.5 3.6 29 424-452 2-30 (31)
52 COG3071 HemY Uncharacterized e 97.6 0.011 2.5E-07 63.2 22.5 282 163-486 97-390 (400)
53 PF08579 RPM2: Mitochondrial r 97.5 0.0012 2.7E-08 58.5 11.0 78 392-469 30-116 (120)
54 TIGR00540 hemY_coli hemY prote 97.5 0.013 2.7E-07 65.8 22.1 230 160-448 163-396 (409)
55 PF10037 MRP-S27: Mitochondria 97.5 0.0011 2.3E-08 73.4 12.3 118 352-470 67-186 (429)
56 KOG2003 TPR repeat-containing 97.4 0.026 5.7E-07 60.9 20.7 125 358-486 564-689 (840)
57 PF08579 RPM2: Mitochondrial r 97.3 0.002 4.4E-08 57.1 10.1 78 358-435 31-117 (120)
58 COG2956 Predicted N-acetylgluc 97.3 0.033 7.2E-07 58.2 19.8 136 143-317 35-174 (389)
59 KOG1155 Anaphase-promoting com 97.2 0.26 5.7E-06 54.0 26.7 238 201-504 272-519 (559)
60 KOG4626 O-linked N-acetylgluco 97.2 0.022 4.9E-07 63.9 19.0 281 160-486 194-485 (966)
61 PF06239 ECSIT: Evolutionarily 97.1 0.0035 7.6E-08 62.3 10.0 99 385-483 45-165 (228)
62 PF12569 NARP1: NMDA receptor- 97.1 0.097 2.1E-06 60.0 22.9 268 199-503 12-308 (517)
63 PF10037 MRP-S27: Mitochondria 97.0 0.0085 1.8E-07 66.4 13.7 131 374-504 50-186 (429)
64 COG3071 HemY Uncharacterized e 96.9 0.2 4.4E-06 53.9 22.3 143 358-503 193-372 (400)
65 KOG1840 Kinesin light chain [C 96.9 0.17 3.7E-06 57.5 22.8 212 192-484 200-436 (508)
66 KOG2076 RNA polymerase III tra 96.9 0.25 5.5E-06 58.1 24.0 297 161-485 218-554 (895)
67 PF06239 ECSIT: Evolutionarily 96.9 0.0066 1.4E-07 60.4 9.7 98 350-448 46-165 (228)
68 COG3063 PilF Tfp pilus assembl 96.9 0.23 4.9E-06 50.0 20.4 208 194-463 38-246 (250)
69 KOG2003 TPR repeat-containing 96.7 0.039 8.5E-07 59.6 15.0 285 160-483 429-719 (840)
70 PRK11189 lipoprotein NlpI; Pro 96.7 0.18 3.9E-06 53.8 20.5 217 205-486 40-265 (296)
71 COG4783 Putative Zn-dependent 96.7 0.32 6.9E-06 53.8 22.2 143 296-493 318-461 (484)
72 PF04733 Coatomer_E: Coatomer 96.7 0.013 2.8E-07 62.4 11.3 124 358-486 137-265 (290)
73 cd05804 StaR_like StaR_like; a 96.6 0.55 1.2E-05 51.0 24.0 230 199-486 51-293 (355)
74 PF09295 ChAPs: ChAPs (Chs5p-A 96.6 0.06 1.3E-06 59.5 15.9 121 358-485 175-296 (395)
75 PF05843 Suf: Suppressor of fo 96.5 0.061 1.3E-06 57.0 14.6 129 353-486 3-136 (280)
76 KOG1129 TPR repeat-containing 96.4 0.4 8.6E-06 50.4 19.6 245 179-486 211-458 (478)
77 KOG1126 DNA-binding cell divis 96.4 0.098 2.1E-06 59.6 16.3 247 162-452 365-621 (638)
78 TIGR03302 OM_YfiO outer membra 96.3 0.27 5.8E-06 50.2 18.0 160 294-486 43-232 (235)
79 PF04733 Coatomer_E: Coatomer 96.2 0.062 1.3E-06 57.1 13.1 117 360-486 110-230 (290)
80 cd00189 TPR Tetratricopeptide 96.2 0.093 2E-06 43.2 11.7 87 360-448 8-94 (100)
81 KOG2002 TPR-containing nuclear 96.1 1.2 2.5E-05 53.3 23.5 311 159-504 422-763 (1018)
82 PRK10370 formate-dependent nit 96.1 0.32 6.9E-06 48.7 17.0 129 365-498 52-184 (198)
83 KOG1915 Cell cycle control pro 96.1 1.8 3.9E-05 47.8 23.1 282 161-486 152-466 (677)
84 PRK15359 type III secretion sy 96.1 0.16 3.4E-06 48.0 13.9 91 393-485 30-120 (144)
85 cd00189 TPR Tetratricopeptide 96.1 0.1 2.3E-06 42.9 11.4 96 389-486 2-97 (100)
86 TIGR02552 LcrH_SycD type III s 96.1 0.21 4.7E-06 45.9 14.4 91 358-450 23-113 (135)
87 cd05804 StaR_like StaR_like; a 96.0 0.9 1.9E-05 49.4 21.6 92 392-484 119-213 (355)
88 KOG3785 Uncharacterized conser 96.0 0.061 1.3E-06 56.8 11.1 192 294-496 295-498 (557)
89 TIGR02552 LcrH_SycD type III s 96.0 0.32 7E-06 44.7 15.3 99 386-486 16-114 (135)
90 PRK15359 type III secretion sy 95.9 0.29 6.3E-06 46.2 14.7 120 338-462 11-130 (144)
91 PF09295 ChAPs: ChAPs (Chs5p-A 95.9 0.086 1.9E-06 58.2 12.5 116 294-449 179-295 (395)
92 PF09976 TPR_21: Tetratricopep 95.8 0.27 5.9E-06 46.4 14.3 123 354-482 15-143 (145)
93 KOG1128 Uncharacterized conser 95.8 0.32 6.8E-06 56.2 16.7 224 159-467 407-633 (777)
94 KOG2076 RNA polymerase III tra 95.8 2.3 4.9E-05 50.5 23.8 283 162-484 151-510 (895)
95 KOG3081 Vesicle coat complex C 95.7 0.48 1.1E-05 48.6 15.8 122 360-486 145-271 (299)
96 KOG3785 Uncharacterized conser 95.7 0.49 1.1E-05 50.2 16.3 202 198-460 292-497 (557)
97 KOG1070 rRNA processing protei 95.6 0.89 1.9E-05 56.1 20.0 28 192-219 1459-1486(1710)
98 KOG1070 rRNA processing protei 95.6 1.4 3.1E-05 54.4 21.5 141 358-504 1536-1680(1710)
99 TIGR03302 OM_YfiO outer membra 95.5 1.9 4E-05 44.0 20.3 84 366-451 129-232 (235)
100 PF12921 ATP13: Mitochondrial 95.5 0.14 2.9E-06 47.3 10.3 98 386-503 1-99 (126)
101 PRK11189 lipoprotein NlpI; Pro 95.5 0.65 1.4E-05 49.6 17.2 123 358-485 70-193 (296)
102 KOG4340 Uncharacterized conser 95.5 0.64 1.4E-05 48.3 15.9 179 248-449 156-337 (459)
103 KOG1156 N-terminal acetyltrans 95.3 5.6 0.00012 45.8 24.0 300 157-493 192-518 (700)
104 KOG1155 Anaphase-promoting com 95.2 3.5 7.6E-05 45.6 21.3 126 358-486 336-461 (559)
105 COG3063 PilF Tfp pilus assembl 95.2 1.4 3E-05 44.5 16.7 146 358-506 41-188 (250)
106 TIGR02795 tol_pal_ybgF tol-pal 95.1 0.52 1.1E-05 41.9 13.0 94 391-486 6-105 (119)
107 KOG1129 TPR repeat-containing 95.1 0.2 4.3E-06 52.6 11.1 154 294-486 233-387 (478)
108 KOG0547 Translocase of outer m 95.1 4.1 8.9E-05 45.4 21.4 124 360-486 436-566 (606)
109 TIGR02795 tol_pal_ybgF tol-pal 95.0 0.77 1.7E-05 40.7 13.7 95 358-452 8-106 (119)
110 PRK14720 transcript cleavage f 94.9 3.8 8.2E-05 49.9 22.6 218 188-486 28-252 (906)
111 COG5010 TadD Flp pilus assembl 94.8 1.1 2.4E-05 46.0 15.2 123 358-483 106-228 (257)
112 KOG2047 mRNA splicing factor [ 94.7 4 8.8E-05 46.8 20.7 301 162-484 359-685 (835)
113 KOG3081 Vesicle coat complex C 94.7 0.94 2E-05 46.6 14.3 198 189-449 70-269 (299)
114 PF12921 ATP13: Mitochondrial 94.6 0.34 7.4E-06 44.7 10.3 55 417-471 47-102 (126)
115 PRK10370 formate-dependent nit 94.6 1 2.3E-05 45.0 14.7 112 350-466 72-186 (198)
116 KOG3941 Intermediate in Toll s 94.5 0.38 8.3E-06 49.6 11.2 84 402-485 87-187 (406)
117 KOG3616 Selective LIM binding 94.3 0.77 1.7E-05 52.8 13.9 76 361-447 741-816 (1636)
118 PRK04841 transcriptional regul 94.2 4.5 9.8E-05 50.1 22.4 273 161-486 463-760 (903)
119 KOG0985 Vesicle coat protein c 94.2 2.4 5.1E-05 50.9 17.9 216 205-482 1089-1304(1666)
120 PRK10153 DNA-binding transcrip 94.1 5 0.00011 46.3 20.7 146 345-497 331-491 (517)
121 PRK04841 transcriptional regul 94.1 13 0.00027 46.2 25.9 276 162-486 421-720 (903)
122 PF14938 SNAP: Soluble NSF att 94.0 2.6 5.6E-05 44.6 17.0 122 361-483 123-263 (282)
123 PF12895 Apc3: Anaphase-promot 93.9 0.11 2.3E-06 44.0 5.1 79 366-447 3-83 (84)
124 KOG3616 Selective LIM binding 93.8 0.66 1.4E-05 53.3 12.1 112 358-485 797-910 (1636)
125 PRK02603 photosystem I assembl 93.7 2.2 4.7E-05 41.4 14.6 79 358-438 41-122 (172)
126 KOG1914 mRNA cleavage and poly 93.6 1.9 4.2E-05 48.4 15.2 129 353-486 368-501 (656)
127 PRK15179 Vi polysaccharide bio 93.5 2.4 5.2E-05 50.6 17.2 123 358-486 92-217 (694)
128 PLN03088 SGT1, suppressor of 93.5 1.3 2.8E-05 48.7 14.0 101 360-464 10-110 (356)
129 PRK02603 photosystem I assembl 93.5 3.4 7.3E-05 40.1 15.6 111 386-502 34-161 (172)
130 PF12895 Apc3: Anaphase-promot 93.4 0.18 3.9E-06 42.6 5.7 80 400-482 2-83 (84)
131 PRK15179 Vi polysaccharide bio 93.3 3.3 7.1E-05 49.5 17.8 132 294-463 96-228 (694)
132 PF14559 TPR_19: Tetratricopep 93.2 0.31 6.7E-06 39.0 6.5 21 392-412 30-50 (68)
133 COG5107 RNA14 Pre-mRNA 3'-end 92.9 2.4 5.2E-05 46.6 14.3 139 352-497 398-540 (660)
134 KOG1538 Uncharacterized conser 92.8 2.5 5.4E-05 48.3 14.6 88 388-486 748-846 (1081)
135 PF14559 TPR_19: Tetratricopep 92.8 0.33 7.2E-06 38.8 6.2 65 398-465 2-66 (68)
136 COG4783 Putative Zn-dependent 92.7 3.4 7.3E-05 46.0 15.3 121 362-486 316-437 (484)
137 KOG4340 Uncharacterized conser 92.7 5.6 0.00012 41.6 15.9 276 160-509 20-328 (459)
138 PF03704 BTAD: Bacterial trans 92.6 0.54 1.2E-05 44.2 8.3 66 358-424 68-138 (146)
139 KOG3941 Intermediate in Toll s 92.6 0.31 6.7E-06 50.2 6.8 86 365-450 85-187 (406)
140 PF09976 TPR_21: Tetratricopep 92.6 0.81 1.8E-05 43.1 9.5 88 358-447 54-143 (145)
141 PF05843 Suf: Suppressor of fo 92.6 0.64 1.4E-05 49.2 9.6 97 388-486 2-99 (280)
142 PLN03088 SGT1, suppressor of 92.5 2.5 5.4E-05 46.4 14.5 97 395-495 10-106 (356)
143 PF03704 BTAD: Bacterial trans 92.5 0.68 1.5E-05 43.5 8.8 69 390-459 65-138 (146)
144 CHL00033 ycf3 photosystem I as 92.5 2.2 4.9E-05 41.1 12.7 58 358-415 41-100 (168)
145 KOG0495 HAT repeat protein [RN 92.3 27 0.00059 40.6 28.3 188 358-560 624-818 (913)
146 KOG3617 WD40 and TPR repeat-co 92.2 2.3 5E-05 49.9 13.7 236 163-483 741-993 (1416)
147 KOG1128 Uncharacterized conser 91.7 5 0.00011 46.8 15.6 211 198-486 405-616 (777)
148 KOG2002 TPR-containing nuclear 91.3 27 0.00059 42.3 21.4 220 206-486 251-481 (1018)
149 KOG2047 mRNA splicing factor [ 91.1 35 0.00076 39.6 23.0 45 192-238 249-293 (835)
150 CHL00033 ycf3 photosystem I as 91.0 4.1 8.8E-05 39.2 12.7 96 386-482 34-138 (168)
151 KOG1914 mRNA cleavage and poly 91.0 2.2 4.9E-05 47.9 11.6 134 277-451 365-501 (656)
152 KOG0495 HAT repeat protein [RN 91.0 37 0.0008 39.6 25.6 119 364-486 562-680 (913)
153 KOG0985 Vesicle coat protein c 90.7 43 0.00093 40.9 21.9 232 192-483 985-1220(1666)
154 PF04840 Vps16_C: Vps16, C-ter 90.6 2.7 5.9E-05 45.3 11.9 105 358-482 183-287 (319)
155 KOG2376 Signal recognition par 90.5 38 0.00082 38.9 21.1 137 367-506 356-507 (652)
156 PF12688 TPR_5: Tetratrico pep 90.3 8.3 0.00018 35.2 13.1 102 360-469 9-118 (120)
157 KOG1156 N-terminal acetyltrans 90.1 10 0.00022 43.7 16.0 269 192-487 144-469 (700)
158 KOG3777 Uncharacterized conser 90.0 0.13 2.8E-06 56.7 1.2 104 603-722 11-124 (443)
159 PRK10866 outer membrane biogen 89.9 15 0.00032 38.0 16.3 160 294-484 42-239 (243)
160 smart00299 CLH Clathrin heavy 89.9 8.6 0.00019 35.7 13.4 119 358-499 13-132 (140)
161 KOG1915 Cell cycle control pro 89.9 8.3 0.00018 42.9 14.5 118 363-486 152-273 (677)
162 PRK10803 tol-pal system protei 89.8 8.7 0.00019 40.2 14.5 102 388-493 144-251 (263)
163 PLN02789 farnesyltranstransfer 89.8 33 0.00071 37.1 23.9 210 198-470 44-268 (320)
164 PF13170 DUF4003: Protein of u 89.5 11 0.00024 40.2 15.3 153 300-486 78-250 (297)
165 KOG2053 Mitochondrial inherita 89.0 9.2 0.0002 45.6 15.0 134 363-504 20-157 (932)
166 PF13170 DUF4003: Protein of u 88.9 8.6 0.00019 41.0 13.9 70 207-287 78-150 (297)
167 KOG1173 Anaphase-promoting com 88.8 49 0.0011 37.9 23.0 124 360-485 388-517 (611)
168 PF13432 TPR_16: Tetratricopep 88.5 1.7 3.8E-05 34.3 6.6 55 360-415 5-59 (65)
169 PF13432 TPR_16: Tetratricopep 88.5 2 4.4E-05 33.9 6.9 54 431-486 6-60 (65)
170 PF13371 TPR_9: Tetratricopept 87.6 4.1 8.8E-05 32.9 8.4 56 430-486 3-58 (73)
171 KOG2376 Signal recognition par 87.3 48 0.001 38.1 18.7 116 359-486 19-139 (652)
172 COG5010 TadD Flp pilus assembl 86.7 34 0.00075 35.3 15.9 124 360-486 74-197 (257)
173 PF04840 Vps16_C: Vps16, C-ter 86.5 44 0.00096 36.0 17.8 87 387-483 177-263 (319)
174 PF12688 TPR_5: Tetratrico pep 85.8 16 0.00035 33.3 12.0 88 394-483 8-101 (120)
175 KOG2796 Uncharacterized conser 84.7 26 0.00056 36.3 13.6 132 358-494 183-321 (366)
176 PRK10803 tol-pal system protei 84.5 13 0.00028 39.0 12.1 94 353-451 145-246 (263)
177 PRK15363 pathogenicity island 84.3 14 0.00031 35.3 11.2 90 394-486 42-132 (157)
178 PRK15363 pathogenicity island 84.1 18 0.0004 34.5 11.8 90 360-451 43-132 (157)
179 PRK10866 outer membrane biogen 83.8 48 0.001 34.2 16.0 88 358-449 150-239 (243)
180 PF14938 SNAP: Soluble NSF att 83.8 42 0.00092 35.3 16.1 91 358-448 161-263 (282)
181 PF13424 TPR_12: Tetratricopep 83.6 2.5 5.3E-05 34.8 5.3 58 354-412 8-71 (78)
182 PF13424 TPR_12: Tetratricopep 82.8 3.7 8.1E-05 33.7 6.1 61 388-448 6-72 (78)
183 PRK14720 transcript cleavage f 82.1 28 0.00061 42.6 15.2 121 357-486 36-178 (906)
184 KOG4570 Uncharacterized conser 82.1 11 0.00024 39.8 10.1 103 382-486 59-164 (418)
185 PF13414 TPR_11: TPR repeat; P 81.5 6.5 0.00014 31.3 6.9 55 358-413 9-64 (69)
186 PLN03098 LPA1 LOW PSII ACCUMUL 81.5 31 0.00067 38.7 14.0 64 350-416 74-141 (453)
187 PF10300 DUF3808: Protein of u 81.4 24 0.00051 40.4 13.7 118 365-485 246-375 (468)
188 PF13371 TPR_9: Tetratricopept 81.1 5.9 0.00013 31.9 6.6 54 361-415 4-57 (73)
189 PF13414 TPR_11: TPR repeat; P 80.5 8.2 0.00018 30.7 7.2 60 388-448 4-64 (69)
190 KOG3060 Uncharacterized conser 80.5 76 0.0016 32.9 18.0 120 361-486 61-183 (289)
191 KOG1173 Anaphase-promoting com 80.1 1.2E+02 0.0026 34.9 18.8 265 159-467 253-532 (611)
192 PLN03098 LPA1 LOW PSII ACCUMUL 79.9 26 0.00057 39.2 12.8 66 384-451 72-141 (453)
193 PLN02789 farnesyltranstransfer 79.5 84 0.0018 33.9 16.5 131 358-493 43-176 (320)
194 PRK10153 DNA-binding transcrip 78.7 1.2E+02 0.0025 35.3 18.3 74 384-461 417-490 (517)
195 PF07035 Mic1: Colon cancer-as 78.1 69 0.0015 31.0 13.9 102 372-483 14-115 (167)
196 PF09613 HrpB1_HrpK: Bacterial 77.5 44 0.00096 32.1 11.9 51 399-451 22-73 (160)
197 KOG2053 Mitochondrial inherita 76.7 1.8E+02 0.004 35.2 21.8 220 202-486 20-255 (932)
198 COG3629 DnrI DNA-binding trans 76.7 21 0.00045 37.6 10.4 59 426-485 157-215 (280)
199 PF13525 YfiO: Outer membrane 76.4 63 0.0014 32.2 13.7 73 160-237 15-88 (203)
200 KOG4570 Uncharacterized conser 76.1 12 0.00026 39.6 8.2 99 277-416 63-164 (418)
201 KOG3617 WD40 and TPR repeat-co 75.2 1.2E+02 0.0025 36.6 16.3 217 126-412 741-963 (1416)
202 KOG0547 Translocase of outer m 74.8 1.6E+02 0.0034 33.5 24.6 49 162-218 127-176 (606)
203 PF13929 mRNA_stabil: mRNA sta 74.7 52 0.0011 34.7 12.5 140 365-504 141-290 (292)
204 COG3629 DnrI DNA-binding trans 74.6 23 0.0005 37.3 10.1 78 388-466 154-236 (280)
205 COG5107 RNA14 Pre-mRNA 3'-end 73.9 44 0.00095 37.2 12.0 142 281-468 400-546 (660)
206 KOG1174 Anaphase-promoting com 73.8 1.5E+02 0.0033 32.9 21.2 252 201-486 206-467 (564)
207 COG4700 Uncharacterized protei 71.0 1.1E+02 0.0025 30.2 14.6 122 358-483 95-219 (251)
208 PF07079 DUF1347: Protein of u 70.0 1.1E+02 0.0025 34.2 14.2 172 294-505 16-208 (549)
209 smart00299 CLH Clathrin heavy 69.8 42 0.0009 31.0 9.9 87 390-484 10-96 (140)
210 PF13512 TPR_18: Tetratricopep 69.3 47 0.001 31.2 9.8 53 364-416 22-76 (142)
211 TIGR02561 HrpB1_HrpK type III 68.7 98 0.0021 29.4 11.7 75 364-443 22-97 (153)
212 PF00637 Clathrin: Region in C 67.1 2 4.2E-05 40.2 0.2 84 358-448 13-96 (143)
213 PF07035 Mic1: Colon cancer-as 66.6 1.3E+02 0.0028 29.2 14.2 126 344-486 22-149 (167)
214 KOG0553 TPR repeat-containing 65.4 75 0.0016 33.6 11.3 84 398-485 92-177 (304)
215 KOG4162 Predicted calmodulin-b 65.3 2.4E+02 0.0052 33.8 16.3 81 403-485 460-541 (799)
216 PF09613 HrpB1_HrpK: Bacterial 64.9 1.4E+02 0.0029 28.8 12.3 94 358-456 16-111 (160)
217 KOG2796 Uncharacterized conser 64.6 97 0.0021 32.3 11.6 67 364-433 264-330 (366)
218 KOG0553 TPR repeat-containing 63.9 89 0.0019 33.1 11.5 100 361-465 90-190 (304)
219 PF13512 TPR_18: Tetratricopep 63.2 85 0.0018 29.6 10.2 98 387-486 11-128 (142)
220 COG3898 Uncharacterized membra 63.1 2.4E+02 0.0053 31.1 16.9 128 364-497 166-301 (531)
221 KOG3060 Uncharacterized conser 62.8 2E+02 0.0043 30.0 20.3 117 364-484 98-218 (289)
222 PF10602 RPN7: 26S proteasome 62.8 75 0.0016 31.1 10.4 55 358-412 42-98 (177)
223 COG3898 Uncharacterized membra 61.0 2.7E+02 0.0058 30.9 16.5 247 203-485 132-391 (531)
224 TIGR02561 HrpB1_HrpK type III 60.9 1.5E+02 0.0033 28.2 11.4 97 399-502 22-120 (153)
225 PHA02875 ankyrin repeat protei 60.3 1.6E+02 0.0036 32.5 14.2 23 200-226 8-30 (413)
226 PF10602 RPN7: 26S proteasome 60.3 92 0.002 30.4 10.6 97 388-486 37-142 (177)
227 KOG2041 WD40 repeat protein [G 60.2 69 0.0015 37.6 10.6 91 383-486 848-952 (1189)
228 COG1729 Uncharacterized protei 60.0 1.7E+02 0.0037 30.6 12.7 100 389-493 144-249 (262)
229 PF04184 ST7: ST7 protein; In 59.2 1.2E+02 0.0027 34.4 12.2 80 358-437 265-346 (539)
230 PF13176 TPR_7: Tetratricopept 58.6 17 0.00037 25.1 3.8 23 390-412 2-24 (36)
231 PF04053 Coatomer_WDAD: Coatom 58.4 55 0.0012 37.1 9.7 111 358-483 301-428 (443)
232 COG4235 Cytochrome c biogenesi 57.5 2.5E+02 0.0055 29.7 13.6 100 384-486 153-256 (287)
233 PF00637 Clathrin: Region in C 56.3 2.8 6E-05 39.1 -0.9 88 392-486 12-99 (143)
234 PF13176 TPR_7: Tetratricopept 54.8 26 0.00056 24.2 4.2 26 193-218 1-26 (36)
235 PF07079 DUF1347: Protein of u 54.5 1.2E+02 0.0025 34.2 10.8 47 353-399 129-179 (549)
236 KOG1538 Uncharacterized conser 54.1 1.1E+02 0.0024 35.6 10.9 80 363-453 758-848 (1081)
237 PF13762 MNE1: Mitochondrial s 54.1 2E+02 0.0043 27.2 11.5 100 375-474 25-132 (145)
238 PRK15331 chaperone protein Sic 53.4 1.4E+02 0.0031 28.9 10.1 85 364-450 49-133 (165)
239 KOG1920 IkappaB kinase complex 53.3 5.4E+02 0.012 32.6 17.0 100 364-483 920-1025(1265)
240 PF13929 mRNA_stabil: mRNA sta 52.5 1.4E+02 0.003 31.6 10.7 100 368-467 182-288 (292)
241 COG4235 Cytochrome c biogenesi 52.4 2.5E+02 0.0055 29.7 12.7 112 350-466 155-269 (287)
242 COG0735 Fur Fe2+/Zn2+ uptake r 52.4 80 0.0017 29.8 8.4 62 443-505 7-69 (145)
243 COG3118 Thioredoxin domain-con 51.9 3.2E+02 0.007 29.0 13.7 140 360-503 142-283 (304)
244 PF11663 Toxin_YhaV: Toxin wit 51.8 19 0.00042 33.4 3.8 34 160-201 105-138 (140)
245 PF09205 DUF1955: Domain of un 51.7 94 0.002 29.0 8.1 60 358-418 92-151 (161)
246 PF13374 TPR_10: Tetratricopep 51.3 35 0.00077 23.6 4.6 27 388-414 3-29 (42)
247 KOG2280 Vacuolar assembly/sort 50.4 1E+02 0.0022 36.7 10.1 105 370-484 666-771 (829)
248 PF13762 MNE1: Mitochondrial s 50.2 1.4E+02 0.0031 28.1 9.5 79 358-436 45-129 (145)
249 COG1729 Uncharacterized protei 49.0 2.6E+02 0.0055 29.3 11.9 95 353-451 144-244 (262)
250 PF02284 COX5A: Cytochrome c o 48.8 84 0.0018 27.8 7.0 58 371-429 29-86 (108)
251 cd00923 Cyt_c_Oxidase_Va Cytoc 48.1 1.1E+02 0.0023 27.0 7.5 33 416-448 36-68 (103)
252 COG2178 Predicted RNA-binding 47.8 1.5E+02 0.0032 29.5 9.4 107 369-485 20-149 (204)
253 PF11848 DUF3368: Domain of un 47.7 55 0.0012 24.5 5.2 37 199-235 10-46 (48)
254 KOG2297 Predicted translation 47.0 3.9E+02 0.0085 28.6 13.7 59 81-140 31-89 (412)
255 KOG1125 TPR repeat-containing 46.4 2.8E+02 0.0061 32.0 12.6 142 208-409 411-564 (579)
256 PRK15331 chaperone protein Sic 46.4 1.5E+02 0.0033 28.6 9.2 88 396-486 46-134 (165)
257 PF08631 SPO22: Meiosis protei 46.3 3.7E+02 0.008 28.1 16.9 169 296-493 5-193 (278)
258 KOG1920 IkappaB kinase complex 46.2 1.8E+02 0.0039 36.5 11.7 78 359-447 972-1051(1265)
259 KOG1174 Anaphase-promoting com 46.1 4.7E+02 0.01 29.3 20.0 276 163-485 209-499 (564)
260 PF11848 DUF3368: Domain of un 45.4 66 0.0014 24.1 5.3 31 434-464 14-44 (48)
261 COG3118 Thioredoxin domain-con 45.2 4.1E+02 0.0089 28.3 14.1 112 358-472 174-287 (304)
262 PF13374 TPR_10: Tetratricopep 44.8 50 0.0011 22.8 4.5 28 192-219 3-30 (42)
263 cd00923 Cyt_c_Oxidase_Va Cytoc 44.3 1.2E+02 0.0026 26.6 7.2 63 367-430 22-84 (103)
264 PF13525 YfiO: Outer membrane 44.0 3.3E+02 0.0072 26.9 14.5 57 360-416 13-71 (203)
265 PF11207 DUF2989: Protein of u 43.9 1.7E+02 0.0036 29.3 9.3 77 364-442 119-198 (203)
266 PF06844 DUF1244: Protein of u 43.1 4.7 0.0001 32.1 -1.2 41 693-737 15-55 (68)
267 COG3947 Response regulator con 42.6 4.5E+02 0.0097 28.0 12.5 57 192-260 123-190 (361)
268 PF13428 TPR_14: Tetratricopep 42.6 50 0.0011 23.8 4.2 28 389-416 3-30 (44)
269 KOG1127 TPR repeat-containing 42.2 3.4E+02 0.0075 33.6 12.9 124 358-484 498-623 (1238)
270 PF10300 DUF3808: Protein of u 41.9 5.8E+02 0.013 29.1 18.6 118 297-449 246-374 (468)
271 PF02284 COX5A: Cytochrome c o 41.4 2E+02 0.0044 25.5 8.3 46 441-486 29-74 (108)
272 PF11663 Toxin_YhaV: Toxin wit 40.6 23 0.0005 32.9 2.5 33 363-397 106-138 (140)
273 KOG1127 TPR repeat-containing 40.6 8.3E+02 0.018 30.6 16.2 191 197-449 465-657 (1238)
274 PF13428 TPR_14: Tetratricopep 40.4 62 0.0013 23.3 4.5 28 459-486 3-30 (44)
275 PHA03100 ankyrin repeat protei 40.1 3.9E+02 0.0085 30.1 13.3 147 296-458 117-279 (480)
276 KOG2041 WD40 repeat protein [G 39.7 2.7E+02 0.0059 33.0 11.2 49 426-483 856-904 (1189)
277 KOG4555 TPR repeat-containing 38.8 3.1E+02 0.0067 25.7 9.4 91 361-452 52-145 (175)
278 COG4455 ImpE Protein of avirul 38.8 1.9E+02 0.0042 29.4 8.7 16 699-714 239-254 (273)
279 KOG0543 FKBP-type peptidyl-pro 38.2 3.8E+02 0.0083 29.7 11.7 78 423-503 258-336 (397)
280 PF12796 Ank_2: Ankyrin repeat 37.0 69 0.0015 26.6 5.0 56 393-456 29-86 (89)
281 PRK11906 transcriptional regul 36.6 3.4E+02 0.0074 30.7 11.3 112 366-483 318-433 (458)
282 PF11838 ERAP1_C: ERAP1-like C 36.5 5E+02 0.011 27.3 12.8 92 358-452 135-231 (324)
283 PF09205 DUF1955: Domain of un 35.7 3.8E+02 0.0082 25.2 14.6 118 365-486 15-149 (161)
284 KOG0543 FKBP-type peptidyl-pro 34.1 6.2E+02 0.014 28.1 12.5 124 360-486 216-355 (397)
285 PRK15180 Vi polysaccharide bio 34.0 5.4E+02 0.012 29.3 12.0 123 359-485 296-419 (831)
286 COG4455 ImpE Protein of avirul 32.7 2.2E+02 0.0048 29.0 8.1 72 358-430 7-80 (273)
287 KOG1125 TPR repeat-containing 32.4 8.6E+02 0.019 28.3 22.7 113 362-478 440-563 (579)
288 PF10366 Vps39_1: Vacuolar sor 32.3 2.4E+02 0.0052 25.1 7.7 26 460-485 42-67 (108)
289 PF11207 DUF2989: Protein of u 32.2 3.1E+02 0.0067 27.5 9.1 79 397-477 117-198 (203)
290 PF13281 DUF4071: Domain of un 32.0 7.4E+02 0.016 27.4 19.0 32 187-220 139-170 (374)
291 KOG0548 Molecular co-chaperone 31.8 8.5E+02 0.018 28.1 14.7 88 360-448 306-418 (539)
292 PF04184 ST7: ST7 protein; In 31.0 7.3E+02 0.016 28.5 12.6 74 393-466 265-340 (539)
293 PF11846 DUF3366: Domain of un 30.8 1.6E+02 0.0034 29.0 7.1 33 454-486 141-173 (193)
294 PRK10564 maltose regulon perip 30.6 84 0.0018 33.4 5.1 48 184-231 249-297 (303)
295 PF05991 NYN_YacP: YacP-like N 30.6 49 0.0011 32.0 3.2 53 674-733 69-128 (166)
296 KOG0276 Vesicle coat complex C 30.1 4.6E+02 0.01 30.7 10.9 101 362-483 647-747 (794)
297 PF07721 TPR_4: Tetratricopept 30.1 80 0.0017 20.0 3.2 20 392-411 6-25 (26)
298 TIGR03504 FimV_Cterm FimV C-te 29.7 88 0.0019 23.1 3.7 23 393-415 5-27 (44)
299 PF10083 DUF2321: Uncharacteri 29.0 63 0.0014 30.6 3.5 57 548-604 64-136 (158)
300 PF14626 RNase_Zc3h12a_2: Zc3h 28.5 1.3E+02 0.0028 27.3 5.1 87 627-720 9-98 (122)
301 PF10366 Vps39_1: Vacuolar sor 28.3 2.8E+02 0.0061 24.7 7.5 26 390-415 42-67 (108)
302 PHA03100 ankyrin repeat protei 28.1 2.4E+02 0.0052 31.8 9.0 171 294-481 42-238 (480)
303 PF11846 DUF3366: Domain of un 27.8 2.1E+02 0.0046 28.0 7.4 60 392-451 113-173 (193)
304 PRK10564 maltose regulon perip 27.8 1E+02 0.0022 32.8 5.1 45 383-427 252-297 (303)
305 PF13281 DUF4071: Domain of un 27.6 8.7E+02 0.019 26.9 15.2 120 365-486 195-334 (374)
306 KOG4162 Predicted calmodulin-b 27.3 1.2E+03 0.025 28.3 23.7 283 165-484 459-781 (799)
307 PHA02875 ankyrin repeat protei 27.0 2.6E+02 0.0056 30.9 8.8 167 295-479 10-187 (413)
308 PF12926 MOZART2: Mitotic-spin 25.8 4.3E+02 0.0093 22.7 7.9 62 421-484 9-70 (88)
309 PF10475 DUF2450: Protein of u 25.8 8.1E+02 0.017 25.9 12.0 112 358-480 104-220 (291)
310 KOG0548 Molecular co-chaperone 25.8 5.7E+02 0.012 29.4 10.7 103 361-467 11-114 (539)
311 PF00515 TPR_1: Tetratricopept 25.7 1.8E+02 0.0039 19.1 4.6 26 389-414 3-28 (34)
312 PRK13342 recombination factor 25.4 9.7E+02 0.021 26.7 14.7 48 425-472 230-280 (413)
313 KOG2114 Vacuolar assembly/sort 24.7 7.7E+02 0.017 30.1 11.9 110 358-479 340-453 (933)
314 TIGR02508 type_III_yscG type I 24.6 5E+02 0.011 23.1 8.0 46 434-485 51-96 (115)
315 KOG3360 Acylphosphatase [Energ 24.6 53 0.0011 28.5 1.9 28 588-615 55-82 (98)
316 PF04053 Coatomer_WDAD: Coatom 24.5 5.9E+02 0.013 28.9 10.9 81 351-447 347-427 (443)
317 KOG4555 TPR repeat-containing 24.1 6.1E+02 0.013 23.8 10.2 89 396-486 52-144 (175)
318 PF09868 DUF2095: Uncharacteri 23.5 2.8E+02 0.0062 25.0 6.2 33 343-382 59-91 (128)
319 KOG2908 26S proteasome regulat 23.0 6.8E+02 0.015 27.2 10.1 85 358-442 81-177 (380)
320 COG0457 NrfG FOG: TPR repeat [ 22.6 6.1E+02 0.013 23.3 16.6 128 358-486 65-196 (291)
321 TIGR03504 FimV_Cterm FimV C-te 22.3 1.7E+02 0.0037 21.5 4.0 24 429-452 6-29 (44)
322 COG5108 RPO41 Mitochondrial DN 22.1 3.6E+02 0.0078 31.9 8.3 90 357-449 33-130 (1117)
323 PF13174 TPR_6: Tetratricopept 21.6 1.2E+02 0.0026 19.6 3.0 22 465-486 8-29 (33)
324 PF09868 DUF2095: Uncharacteri 21.6 2.9E+02 0.0063 25.0 5.9 25 428-452 67-91 (128)
325 PF12796 Ank_2: Ankyrin repeat 21.4 2E+02 0.0043 23.7 5.1 70 396-476 3-75 (89)
326 PF13431 TPR_17: Tetratricopep 21.4 95 0.0021 21.2 2.4 23 385-407 11-33 (34)
327 PRK07764 DNA polymerase III su 21.3 1.5E+03 0.033 27.9 14.2 54 371-427 184-238 (824)
328 KOG2297 Predicted translation 20.8 1.1E+03 0.023 25.5 12.9 76 358-443 261-342 (412)
329 cd00280 TRFH Telomeric Repeat 20.6 5.1E+02 0.011 25.7 7.9 66 368-436 85-157 (200)
330 PRK09857 putative transposase; 20.6 5.7E+02 0.012 27.2 9.3 65 426-493 210-274 (292)
331 KOG2610 Uncharacterized conser 20.5 1E+03 0.022 26.0 10.7 116 365-483 116-235 (491)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-50 Score=484.07 Aligned_cols=505 Identities=13% Similarity=0.175 Sum_probs=288.6
Q ss_pred hhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004610 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (742)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~t 228 (742)
.+||..+. .+++.++.++|.++|++|.+ .|+.||.+|||+||++|++.|++++|+++|++|.+.|+.||.+|
T Consensus 473 ~tynsLI~--~y~k~G~vd~A~~vf~eM~~------~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 473 KLYTTLIS--TCAKSGKVDAMFEVFHEMVN------AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred HHHHHHHH--HHHhCcCHHHHHHHHHHHHH------cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 33444444 44455555555555555522 23445556666666666666666666666666666666666666
Q ss_pred HHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhccc-CCCC-cccccccccccccccccccccCChHHHHHH
Q 004610 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (742)
Q Consensus 229 yn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~-~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~l 306 (742)
||+||.+|+ +.|++++|.++|. +|... .|+. |.++||+||.+ ||+.|++++|.++
T Consensus 545 YnsLI~a~~----------k~G~~deA~~lf~-------eM~~~~~gi~PD~vTynaLI~a------y~k~G~ldeA~el 601 (1060)
T PLN03218 545 FNALISACG----------QSGAVDRAFDVLA-------EMKAETHPIDPDHITVGALMKA------CANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHH----------HCCCHHHHHHHHH-------HHHHhcCCCCCcHHHHHHHHHH------HHHCCCHHHHHHH
Confidence 666666666 6666666666663 55432 2444 56666666666 6666666666666
Q ss_pred HHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC
Q 004610 307 FNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (742)
Q Consensus 307 f~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (742)
|++|.+.|+.|+..+|+ .+|++|+ ++|..+|++|...|+.||.++|+. ||++|++.|++++|.++|++|.+.
T Consensus 602 f~~M~e~gi~p~~~tyn--sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns-LI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA-LVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHc
Confidence 66666666666666666 6666666 345556666776677777777766 667777777777777777777766
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004610 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (742)
Q Consensus 382 g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (742)
|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 77777777777777777777777777777777666667777777777777777777777777777777667777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHHHHHHhhchHHHHhccc-----cchh-------HHHHHHhhhc
Q 004610 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKK-----KWNE-------SLIKDTMENK 527 (742)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~~~~~~~a~~~-----~w~~-------~~v~ea~~~~ 527 (742)
+||.+|++.|++++|.++|.+|.+. |+.|+ +|+.+.++|... ..+++.. .|+. .-..+++.
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~--Gi~pd~~tynsLIglc~~~-y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~-- 833 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKED--GIKPNLVMCRCITGLCLRR-FEKACALGEPVVSFDSGRPQIENKWTSWALM-- 833 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhccccccccchHHHHHH--
Confidence 7777777777777777777777666 44444 566655554421 1111100 0110 11123444
Q ss_pred CCCccccccCCCCceEEEEeeecCCCccccccccccc-----ccCCH-----HHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 004610 528 GGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAI-----IDLDP-----IETEKFAESVASIAIKRERNSSFQKFQK 597 (742)
Q Consensus 528 g~~~~~m~~~g~~p~~v~~~~v~~~G~C~~c~~~L~~-----i~l~~-----~e~~~l~~~i~~~a~~~~~~~~~~~F~~ 597 (742)
+|++|...|+.|+.++|..++ .+.|...+..+.. +.+.+ ..+..+.+.+ ....+++|..|.+
T Consensus 834 --lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~-----~~~~~~A~~l~~e 905 (1060)
T PLN03218 834 --VYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF-----GEYDPRAFSLLEE 905 (1060)
T ss_pred --HHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh-----ccChHHHHHHHHH
Confidence 778899999999999996655 5555555432211 11111 1122222221 1112468999999
Q ss_pred HHhhcCCcccccccccccccCCCCcCcc----cHHHHHHHHHhhCCCC-CccEEEe--cc--cccc---CCC-CC--Chh
Q 004610 598 WLDYYGPFEAVVDAANVGLYSQRNFKPA----RVNAVVNGIRQKFPSK-KWPLIVL--HN--RRIT---GHK-MD--QPV 662 (742)
Q Consensus 598 ~l~~~~pyD~viDG~NVg~y~~~~~~~~----~i~~vv~~l~~~~~~~-~~~lvvl--~~--~~~~---~~~-~~--~~~ 662 (742)
++..+..+++..+-...- +.-..++.. -+...++.|++++..| +.|-+.+ |. |+.- |+. .. ..-
T Consensus 906 m~~~Gi~p~~~~~~~~~~-~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 984 (1060)
T PLN03218 906 AASLGVVPSVSFKKSPIV-IDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRV 984 (1060)
T ss_pred HHHcCCCCCcccccCceE-EEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHH
Confidence 998876666653332222 221222221 2334444444433334 5664433 22 2221 111 00 001
Q ss_pred hHHHHHHHHhcCeeeeCCCCCCCCccCCcccchhhhhhhhh
Q 004610 663 NRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAI 703 (742)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~~~~l~a~~ 703 (742)
..+..--+++-+.=|-- ..|. +|+.-+.|-.+=||-..+
T Consensus 985 ~~~~~~~l~~l~~~~~~-~~~~-g~~~~~~~~~~~wl~~~~ 1023 (1060)
T PLN03218 985 GQAVAALLRRLGLPYQG-SESH-GKLRINGLSLRRWFQPKL 1023 (1060)
T ss_pred HHHHHHHHHHhCCCCCC-CCCC-CeEEeccHHHHHHhcccC
Confidence 12233334555553321 2222 576667777777877766
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-50 Score=484.10 Aligned_cols=355 Identities=14% Similarity=0.154 Sum_probs=318.3
Q ss_pred chhhhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004610 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (742)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd 225 (742)
....+||..+. .+++.++.++|.++|++|.+. |+.||.++||+||++|++.|++++|+++|++|.+.|+.||
T Consensus 435 pd~~Tyn~LL~--a~~k~g~~e~A~~lf~~M~~~------Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 435 PTLSTFNMLMS--VCASSQDIDGALRVLRLVQEA------GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred CCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 56677888888 788999999999999999554 4667779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHH
Q 004610 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (742)
Q Consensus 226 ~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~ 304 (742)
.+|||+||.+|+ +.|++++|.++|. +|... |+. |.+|||+||.+ ||+.|++++|.
T Consensus 507 vvTynaLI~gy~----------k~G~~eeAl~lf~-------~M~~~-Gv~PD~vTYnsLI~a------~~k~G~~deA~ 562 (1060)
T PLN03218 507 VHTFGALIDGCA----------RAGQVAKAFGAYG-------IMRSK-NVKPDRVVFNALISA------CGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHHHH----------HCcCHHHHHHHHH-------HHHHc-CCCCCHHHHHHHHHH------HHHCCCHHHHH
Confidence 999999999999 9999999999994 77776 877 88999999999 99999999999
Q ss_pred HHHHHHHH--cCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHH
Q 004610 305 STFNEKEN--LGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEK 377 (742)
Q Consensus 305 ~lf~~M~~--~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~ 377 (742)
++|++|.. .|+.||.+||+ .+|++|+ ++|..+|++|.+.|+.|+.++||+ ||.+|++.|++++|.++|++
T Consensus 563 ~lf~eM~~~~~gi~PD~vTyn--aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns-LI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVG--ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI-AVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH-HHHHHHhcCCHHHHHHHHHH
Confidence 99999986 68999999999 9999998 567889999999999999999999 99999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004610 378 MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (742)
Q Consensus 378 M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~ 457 (742)
|...|+.||.+||++||++|++.|++++|+++|++|.+.|+.||..+|++||.+||+.|++++|.++|++|.+.|+.||.
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHH-HHHHhhchHHHHhccccchhHHHHHHhhhcCCCcccc
Q 004610 458 PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534 (742)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~-I~~~~~~~~~~~a~~~~w~~~~v~ea~~~~g~~~~~m 534 (742)
.+||+||.+|++.|++++|.++|++|... ++.|+ ||++ |.++++.+...++. . ++.+|
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~--Gi~Pd~~Ty~sLL~a~~k~G~le~A~-------------~----l~~~M 780 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRL--GLCPNTITYSILLVASERKDDADVGL-------------D----LLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHH-------------H----HHHHH
Confidence 99999999999999999999999999988 66666 8877 76666665543333 2 56667
Q ss_pred ccCCCCceEEEEeeecCCCccc
Q 004610 535 GWLGKGKWIVSHTTVGGDALCK 556 (742)
Q Consensus 535 ~~~g~~p~~v~~~~v~~~G~C~ 556 (742)
...|+.|+.+++.. ++ |.|.
T Consensus 781 ~k~Gi~pd~~tyns-LI-glc~ 800 (1060)
T PLN03218 781 KEDGIKPNLVMCRC-IT-GLCL 800 (1060)
T ss_pred HHcCCCCCHHHHHH-HH-HHHH
Confidence 77888999888844 44 5554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=438.68 Aligned_cols=302 Identities=13% Similarity=0.091 Sum_probs=170.6
Q ss_pred chhhhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004610 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (742)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd 225 (742)
....++|..+. ...+.++.++|.++|++|. .||+++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 156 ~~~~~~n~Li~--~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~ 223 (697)
T PLN03081 156 PDQYMMNRVLL--MHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223 (697)
T ss_pred cchHHHHHHHH--HHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence 34556777776 7788889999999999882 36779999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHccccC-------------------------CcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccc
Q 004610 226 QYHYNVLLYLCSSAAVG-------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (742)
Q Consensus 226 ~~tyn~LL~~~~~~~~~-------------------------~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vt 280 (742)
..||+++|.+|++.... ...|.++|++++|.++|+ +|... |+++
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~-------~m~~~----~~vt 292 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD-------GMPEK----TTVA 292 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH-------hCCCC----ChhH
Confidence 88888888888722100 000224444444444442 33222 4444
Q ss_pred cccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCHHhhH
Q 004610 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDAD 355 (742)
Q Consensus 281 yn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn 355 (742)
||+||.+ |++.|++++|.++|++|.+.|+.||.+||+ .++.+|+ +.|..++..|...|+.||..+||
T Consensus 293 ~n~li~~------y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 293 WNSMLAG------YALHGYSEEALCLYYEMRDSGVSIDQFTFS--IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred HHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 5555555 455555555555555554445555555554 4444444 22333444444445555555554
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004610 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (742)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (742)
+ ||++|++.|++++|.++|++|.+ ||.+|||+||.+|++.|+.++|+++|++|.+.|+.||.+||+++|.+|++.
T Consensus 365 ~-Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 365 A-LVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred H-HHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 4 44555555555555555544432 344445555555555555555555555554444555555555555555555
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 436 GDVDKACSVEEHMLE-HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 436 g~~~~A~~l~~~M~~-~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
|.+++|.++|++|.+ .|+.|+..+|+.||++|++.|++++|.+++++|
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 555555555555443 344455555555555555555555554444444
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.8e-46 Score=450.70 Aligned_cols=404 Identities=13% Similarity=0.072 Sum_probs=310.6
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.+.+.++..+|.++|++|. .||+++||++|.+|++.|++++|+++|++|...|+.||.+||+++|++|++
T Consensus 130 ~~~~~g~~~~A~~~f~~m~----------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMP----------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HHHhCCChHHHHHHHhcCC----------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 4456666666666666661 245566666666666666666666666666666666666666666666553
Q ss_pred cccC-------------------------CcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccccccccccccccccc
Q 004610 239 AAVG-------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLE 293 (742)
Q Consensus 239 ~~~~-------------------------~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~ 293 (742)
.... ...|.++|++++|.++|+ +|... |.++||+||.+
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~-------~m~~~----d~~s~n~li~~------ 262 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD-------RMPRR----DCISWNAMISG------ 262 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHh-------cCCCC----CcchhHHHHHH------
Confidence 2211 001449999999999995 66543 88999999999
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~ 368 (742)
|++.|++++|.++|.+|.+.|+.||.+||+ .++.+++ ..++.++..|...|+.||..+||+ ||++|++.|++
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~-Li~~y~k~g~~ 339 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTIT--SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-LIQMYLSLGSW 339 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHH--HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH-HHHHHHhcCCH
Confidence 999999999999999999999999999999 9999988 456679999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 369 ~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|
T Consensus 340 ~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 340 GEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred HHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999996 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHH-HHHHhhchHHHHhccccchhHHHHHHh---
Q 004610 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTM--- 524 (742)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~w~~~~v~ea~--- 524 (742)
.+.|+.|+..+||+||++|++.|++++|.++|++|.+. ...+|+. |.++++.+...+|. ..+++..
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~------~lf~~m~~~~ 485 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEAL------IFFRQMLLTL 485 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHH------HHHHHHHhCC
Confidence 99999999999999999999999999999999999643 2236777 77777666544333 0111110
Q ss_pred --------------hhcC------CCccccccCCCCceEEEEeeecCCCcccccccccccccC--CHHHHHHHHHHHHHH
Q 004610 525 --------------ENKG------GGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDL--DPIETEKFAESVASI 582 (742)
Q Consensus 525 --------------~~~g------~~~~~m~~~g~~p~~v~~~~v~~~G~C~~c~~~L~~i~l--~~~e~~~l~~~i~~~ 582 (742)
.+.| ..+..+...|..++...+ +.+++++|+++....+.-.+ .+.+...+...|..+
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 0000 122334455667777777 67777888777543322111 123445667777888
Q ss_pred HHhhhcchhHHHHHHHHhhcCCccc
Q 004610 583 AIKRERNSSFQKFQKWLDYYGPFEA 607 (742)
Q Consensus 583 a~~~~~~~~~~~F~~~l~~~~pyD~ 607 (742)
+..+...++++.|+++.+....+|.
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 8888888999999999887544443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=429.12 Aligned_cols=417 Identities=13% Similarity=0.095 Sum_probs=321.3
Q ss_pred hhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004610 150 TVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHY 229 (742)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~ty 229 (742)
++|..+. .+.+.++..+|+++|+.|...+ +..||..+|+++|.+|++.++++.|.+++..|++.|+.||..+|
T Consensus 89 ~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 89 SLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred eHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 4555555 6778999999999999995432 35688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHH
Q 004610 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (742)
Q Consensus 230 n~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~ 309 (742)
|.||++|+ ++|++++|.++|+ +|.+. |+++||+||.+ |++.|++++|.++|++
T Consensus 162 n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----~~~t~n~li~~------~~~~g~~~~A~~lf~~ 214 (697)
T PLN03081 162 NRVLLMHV----------KCGMLIDARRLFD-------EMPER----NLASWGTIIGG------LVDAGNYREAFALFRE 214 (697)
T ss_pred HHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CeeeHHHHHHH------HHHCcCHHHHHHHHHH
Confidence 99999999 9999999999995 66543 89999999999 9999999999999999
Q ss_pred HHHcCCCCCccccc---------------------------------hhHHhhccc-----cccCCCchhhhhcCCCcCH
Q 004610 310 KENLGQFSNGHMKL---------------------------------NSQLLDGRS-----NLERGPDDQSRKKDWSIDN 351 (742)
Q Consensus 310 M~~~G~~Pd~~ty~---------------------------------~~~li~~~~-----~~a~~~~~~m~~~g~~pd~ 351 (742)
|.+.|+.||..||+ ...||++|+ ++|..+|++|.. +|+
T Consensus 215 M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~ 290 (697)
T PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTT 290 (697)
T ss_pred HHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CCh
Confidence 99988888777765 015556665 456667777764 588
Q ss_pred HhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004610 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (742)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (742)
++||+ ||.+|++.|++++|.++|++|.+.|+.||.+||+++|.+|++.|++++|.+++.+|.+.|+.||..+||+||++
T Consensus 291 vt~n~-li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 291 VAWNS-MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 88888 88899999999999999999988899999999999999999999999999999999988999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHH-HHHHhhchHHH
Q 004610 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAA 508 (742)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~-I~~~~~~~~~~ 508 (742)
|+++|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+. |+.|+ ||.. |.++++.|...
T Consensus 370 y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHhcCCcHH
Confidence 999999999999999886 578899999999999999999999999999888 66666 7877 66666555443
Q ss_pred HhccccchhHHHHHHhhhcCCCcccccc-CCCCceEEEEeeecCCCccccccccccc-----ccCCHHHHHHHHHHHHHH
Q 004610 509 RLGKKKWNESLIKDTMENKGGGWHGLGW-LGKGKWIVSHTTVGGDALCKCCGEKLAI-----IDLDPIETEKFAESVASI 582 (742)
Q Consensus 509 ~a~~~~w~~~~v~ea~~~~g~~~~~m~~-~g~~p~~v~~~~v~~~G~C~~c~~~L~~-----i~l~~~e~~~l~~~i~~~ 582 (742)
++. . .|+.|.. .|+.|+..+| +.+++++|+.+....+. ..+.|. ...+...+...
T Consensus 444 ~a~-------------~----~f~~m~~~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p~-~~~~~~Ll~a~ 504 (697)
T PLN03081 444 QGW-------------E----IFQSMSENHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKPT-VNMWAALLTAC 504 (697)
T ss_pred HHH-------------H----HHHHHHHhcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Confidence 332 2 5555653 5888999998 77888888888643221 111111 11233333333
Q ss_pred HHhhhcchhHHHHHHHHhhc----CCcccccccccccccCCCCcCcccHHHHHHHHHh
Q 004610 583 AIKRERNSSFQKFQKWLDYY----GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636 (742)
Q Consensus 583 a~~~~~~~~~~~F~~~l~~~----~pyD~viDG~NVg~y~~~~~~~~~i~~vv~~l~~ 636 (742)
...+........+++.++-. ..|..++++ |.+.| .+.....+.+.+++
T Consensus 505 ~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~-----y~~~G-~~~~A~~v~~~m~~ 556 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL-----YNSSG-RQAEAAKVVETLKR 556 (697)
T ss_pred HHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH-----HHhCC-CHHHHHHHHHHHHH
Confidence 34444444444455544322 124444332 44443 46666777777776
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-43 Score=428.87 Aligned_cols=351 Identities=14% Similarity=0.066 Sum_probs=270.1
Q ss_pred chhhhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004610 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (742)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd 225 (742)
....+||..+. .+.+.++..+|+++|++|.+.| +.||.+||+++|.+|++.|+++.|.+++..|.+.|+.||
T Consensus 251 ~d~~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 251 RDCISWNAMIS--GYFENGECLEGLELFFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred CCcchhHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 34456777777 7889999999999999996554 556669999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHH
Q 004610 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS 305 (742)
Q Consensus 226 ~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~ 305 (742)
..+||+||.+|+ ++|++++|.++|+ +|... |.++||+||.+ |++.|++++|.+
T Consensus 323 ~~~~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~~----d~~s~n~li~~------~~~~g~~~~A~~ 375 (857)
T PLN03077 323 VSVCNSLIQMYL----------SLGSWGEAEKVFS-------RMETK----DAVSWTAMISG------YEKNGLPDKALE 375 (857)
T ss_pred hHHHHHHHHHHH----------hcCCHHHHHHHHh-------hCCCC----CeeeHHHHHHH------HHhCCCHHHHHH
Confidence 999999999999 9999999999995 66543 88999999999 999999999999
Q ss_pred HHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 004610 306 TFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (742)
Q Consensus 306 lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~ 380 (742)
+|++|.+.|+.||.+||+ .++.+++ +.+..++..|...|+.||..+||+ ||++|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~-Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIA--SVLSACACLGDLDVGVKLHELAERKGLISYVVVANA-LIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHhCCCCCceeHH--HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH-HHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999 9999988 556679999999999999999999 99999999999999999999864
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC------
Q 004610 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY------ 454 (742)
Q Consensus 381 ~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~------ 454 (742)
+|.++||+||.+|++.|+.++|+++|++|.. ++.||.+||+++|.+|++.|+++.+.+++..|.+.|+.
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 5777888888888888888888888888864 47777777777776666666666666666666666654
Q ss_pred ------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHH-HHHHhhchHH
Q 004610 455 ------------------------PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEA 507 (742)
Q Consensus 455 ------------------------pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~-I~~~~~~~~~ 507 (742)
||..+||+||.+|++.|+.++|.++|++|.+. |+.|+ ||.. |.++++.|..
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHhhcChH
Confidence 45555566666666666666666666666655 44444 5554 4443333332
Q ss_pred HHhccccchhHHHHHHhhhcCCCccccc-cCCCCceEEEEeeecCCCcccccc
Q 004610 508 ARLGKKKWNESLIKDTMENKGGGWHGLG-WLGKGKWIVSHTTVGGDALCKCCG 559 (742)
Q Consensus 508 ~~a~~~~w~~~~v~ea~~~~g~~~~~m~-~~g~~p~~v~~~~v~~~G~C~~c~ 559 (742)
.++.. .|+.|. ..|+.|+..+| +.+++++|+++.
T Consensus 606 -------------~ea~~----~f~~M~~~~gi~P~~~~y-~~lv~~l~r~G~ 640 (857)
T PLN03077 606 -------------TQGLE----YFHSMEEKYSITPNLKHY-ACVVDLLGRAGK 640 (857)
T ss_pred -------------HHHHH----HHHHHHHHhCCCCchHHH-HHHHHHHHhCCC
Confidence 22222 344444 34555655555 444555555553
No 7
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=99.79 E-value=1.2e-20 Score=180.78 Aligned_cols=122 Identities=28% Similarity=0.421 Sum_probs=93.1
Q ss_pred ccccccccccccC--CCCcCcccHHHHHHHHHhhCCCCCccEEEeccccccCCCCCChhhHHHHHHHHhcCeeeeCCCCC
Q 004610 606 EAVVDAANVGLYS--QRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683 (742)
Q Consensus 606 D~viDG~NVg~y~--~~~~~~~~i~~vv~~l~~~~~~~~~~lvvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (742)
-+||||+|||++. +..|++.+|..+|++|++ .|..+++|++..+........+.+.+.+++|.+.+.++.||+++
T Consensus 4 ~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~ 80 (155)
T PF11977_consen 4 PVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGS 80 (155)
T ss_dssp -EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEE
T ss_pred EEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCC
Confidence 3799999998632 335999999999999999 67778888876664332335677788999999999999999999
Q ss_pred C--------CCccCCcccchhhhhhhhhcCCceEEeCcccccccccccCCchhhhhhhcceeeeeeC
Q 004610 684 N--------DDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVSESLL 742 (742)
Q Consensus 684 ~--------dd~~~~~~~~~~~~l~a~~~~~~~~vs~d~~rdh~~~l~~~~~f~~w~~~h~~~~~~~ 742 (742)
+ ||+ |||++|...+++|||||+||||.+ ....|.+|.++|+|+|+|+
T Consensus 81 ~~g~~~~~ydD~---------~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~tf~ 135 (155)
T PF11977_consen 81 NYGSRSRNYDDR---------YILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFTFV 135 (155)
T ss_dssp ETTEEEEB-HHH---------HHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--EEE
T ss_pred CCCCcccccchH---------HHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEEEE
Confidence 8 999 999999999999999999999999 7789999999999999984
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.63 E-value=3.5e-14 Score=157.32 Aligned_cols=285 Identities=13% Similarity=0.042 Sum_probs=162.2
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd---~~tyn~LL~~~~~ 238 (742)
..++.++|...|+++.+.. +.+..+|..+...+.+.|++++|..+++.+...+-.++ ...+..+...|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 5578889999999996532 12446899999999999999999999999987543322 356788888888
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
+.|+.++|..+|. ++.+. ...+..+++.++.. +++.|++++|.++++.|.+.+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8899999999995 55543 22355678888888 9999999999999999988653322
Q ss_pred cc----ccchhHHhh-----ccccccCCCchhhhhcCCCcCH-HhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHH
Q 004610 319 GH----MKLNSQLLD-----GRSNLERGPDDQSRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (742)
Q Consensus 319 ~~----ty~~~~li~-----~~~~~a~~~~~~m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ 388 (742)
.. .|. .+.. +...+|...+.++... .|+. ..+.. +...|.+.|++++|.++|+++...+......
T Consensus 176 ~~~~~~~~~--~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 176 RVEIAHFYC--ELAQQALARGDLDAARALLKKALAA--DPQCVRASIL-LGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred hHHHHHHHH--HHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 11 111 1111 1112233333333332 1221 12222 4444444444444544444444332111123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (742)
+++.++.+|++.|++++|...++++.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.++..++
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 3444444444444455444444444433 233334444444444444454454444444433 344444444444444
Q ss_pred H---cCCHHHHHHHHHHHHHc
Q 004610 469 E---AGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 469 ~---~g~~~~A~~ll~~M~~~ 486 (742)
. .|+.+++..+|++|.+.
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hccCCccchhHHHHHHHHHHH
Confidence 2 23444444444444443
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.54 E-value=4.6e-13 Score=148.33 Aligned_cols=270 Identities=14% Similarity=0.041 Sum_probs=206.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC---
Q 004610 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--- 276 (742)
Q Consensus 200 ~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~--- 276 (742)
.+...|++++|+..|.+|.+.+ +.+..+|..+...+. ..|++++|..++. .+.......
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----------~~g~~~~A~~~~~-------~~l~~~~~~~~~ 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFR----------RRGEVDRAIRIHQ-------NLLSRPDLTREQ 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH----------HcCcHHHHHHHHH-------HHhcCCCCCHHH
Confidence 3567799999999999999763 235568888888888 8899999999995 555442222
Q ss_pred cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCH
Q 004610 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDN 351 (742)
Q Consensus 277 ~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~ 351 (742)
....|..+... +.+.|++++|..+|+++.+.. .++..++. .+...+. .+|...+..+...+-.++.
T Consensus 106 ~~~~~~~La~~------~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~--~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (389)
T PRK11788 106 RLLALQELGQD------YLKAGLLDRAEELFLQLVDEG-DFAEGALQ--QLLEIYQQEKDWQKAIDVAERLEKLGGDSLR 176 (389)
T ss_pred HHHHHHHHHHH------HHHCCCHHHHHHHHHHHHcCC-cchHHHHH--HHHHHHHHhchHHHHHHHHHHHHHhcCCcch
Confidence 12346777777 999999999999999998752 23445555 5555544 4566677777765543322
Q ss_pred ---H-hhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004610 352 ---Q-DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427 (742)
Q Consensus 352 ---~-tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (742)
. .|.. +...+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+-.....+++.
T Consensus 177 ~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 177 VEIAHFYCE-LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred HHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 1 2334 6677889999999999999998754 33466888899999999999999999999987642223567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHH-HHHHh
Q 004610 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWF 502 (742)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~ 502 (742)
+..+|++.|+.++|...++++.+. .|+...+..+...+.+.|++++|..+|.++.+. .+...++.. +..++
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 999999999999999999999876 477777899999999999999999999998776 555445554 44444
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.42 E-value=6.2e-11 Score=144.16 Aligned_cols=283 Identities=12% Similarity=-0.016 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcc
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~ 271 (742)
..|..+...|.+.|++++|+..|..+.+.. +.+...+..+...+. +.|+.++|...|. ++..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 455555555555555555555555555332 223444555555555 5556666666653 2222
Q ss_pred cCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcC
Q 004610 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKD 346 (742)
Q Consensus 272 ~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g 346 (742)
. ...+..+|..+... ++..|++++|..+++.|.+.+. ++...+. .+...+. .+|...+..+...+
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHP-KAALGFE--LEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCc-CChHHHH--HHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 1 11133445555555 6666666666666666665542 2222222 2222221 34444555555443
Q ss_pred CCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004610 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
|+..++.. +...+.+.|+.++|.+.++++.... +.+...++.+...|.+.|+.++|.++|+++.+.. .++..+++
T Consensus 734 --~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 734 --PSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred --CCchHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 44445555 6677777777777777777776653 4566777777777777888888888888777653 35667777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC-ChhHH-HHHHHHhhc
Q 004610 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTA-DVIAKWFNS 504 (742)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~-~p~t~-~~I~~~~~~ 504 (742)
.+...+.+.|+ .+|..++++..+.. .-+..++..+...+...|++++|.++|+++.+. .+ .+.++ +....+++.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHc
Confidence 77777777777 77888777776542 223455667777778888888888888888876 33 34444 336666666
Q ss_pred hHHHHhc
Q 004610 505 KEAARLG 511 (742)
Q Consensus 505 ~~~~~a~ 511 (742)
|...++.
T Consensus 885 g~~~~A~ 891 (899)
T TIGR02917 885 GRKAEAR 891 (899)
T ss_pred CCHHHHH
Confidence 6544433
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.38 E-value=1.8e-10 Score=140.04 Aligned_cols=262 Identities=10% Similarity=-0.047 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcc
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~ 271 (742)
.+|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+. ..|+.++|.+.|. ++..
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~----------~~g~~~~A~~~~~-------~~~~ 527 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDI----------QEGNPDDAIQRFE-------KVLT 527 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHH
Confidence 445555555555555555555555554321 122333444444444 4455555555552 2322
Q ss_pred cCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcC
Q 004610 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKD 346 (742)
Q Consensus 272 ~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g 346 (742)
. +..+...++.+... +.+.|+.++|..+|.++.+.+- .+...+. .+...+. ..|...+..+...
T Consensus 528 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~- 596 (899)
T TIGR02917 528 I-DPKNLRAILALAGL------YLRTGNEEEAVAWLEKAAELNP-QEIEPAL--ALAQYYLGKGQLKKALAILNEAADA- 596 (899)
T ss_pred h-CcCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCc-cchhHHH--HHHHHHHHCCCHHHHHHHHHHHHHc-
Confidence 2 11133334444444 5555555566555555544321 1111111 2222222 2333344444322
Q ss_pred CCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004610 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
...+...|.. +...|.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|..+++++.+. ...+..++.
T Consensus 597 ~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 673 (899)
T TIGR02917 597 APDSPEAWLM-LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQI 673 (899)
T ss_pred CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHH
Confidence 1223344444 5566666666666666666665432 234455566666666666666666666665543 122355566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+...++..|++++|..+++.|.+.+ ..+...+..+...+.+.|++++|.+.|.++...
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 66666666666666666666665554 334555556666666666666666666666554
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=1.3e-12 Score=100.22 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004610 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (742)
Q Consensus 385 pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (742)
||+++||+||++|++.|++++|+++|++|++.|+.||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444444
No 13
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=1.7e-12 Score=99.65 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004610 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (742)
Q Consensus 189 P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (742)
||+++||++|++|++.|++++|+++|++|++.|++||.+||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999999999999999999999999999999998
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=7.4e-10 Score=116.65 Aligned_cols=288 Identities=14% Similarity=0.066 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCc-------------------ccCCCCCH
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV-------------------KPAKSGSG 252 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~-------------------~~~k~G~~ 252 (742)
.+=|.|+.. ...|.++++.-+|+.|...|+..+...--.|+..-|=-+...+ .-=|.|.+
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 455666654 4578999999999999999999888887777776552110000 01134443
Q ss_pred HHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhcc
Q 004610 253 MRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR 331 (742)
Q Consensus 253 ~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~ 331 (742)
.+ -+|. -.+ ..-||.+||.| +|+-...+.|.+++.+-.....+.+.-+|| .+|.+-
T Consensus 196 Ad--L~~E-------------~~PKT~et~s~mI~G------l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN--~lI~~~ 252 (625)
T KOG4422|consen 196 AD--LLFE-------------TLPKTDETVSIMIAG------LCKFSSLERARELYKEHRAAKGKVYREAFN--GLIGAS 252 (625)
T ss_pred HH--HHHh-------------hcCCCchhHHHHHHH------HHHHHhHHHHHHHHHHHHHhhheeeHHhhh--hhhhHH
Confidence 33 3332 111 56689999999 999999999999999999999999999999 888776
Q ss_pred c-cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-
Q 004610 332 S-NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM- 405 (742)
Q Consensus 332 ~-~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~- 405 (742)
+ ...+.+..+|++..+.||..|+|+ ++++..+.|+++. |.+++.+|++-|+.|...+|--+|..+++.+++.+
T Consensus 253 S~~~~K~Lv~EMisqkm~Pnl~TfNa-lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 253 SYSVGKKLVAEMISQKMTPNLFTFNA-LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HhhccHHHHHHHHHhhcCCchHhHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 5 444779999999999999999999 9999999997765 56788999999999999999999999999888753
Q ss_pred HHHHHHHHHH----CCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHHc
Q 004610 406 AFDMVKRMKS----LGINP----RLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE---PELEALLRVSVEA 470 (742)
Q Consensus 406 A~~l~~~M~~----~g~~P----d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd~---~ty~~Li~~~~~~ 470 (742)
|..++.++.. +.++| |..-|-..+..|.+..+.+.|..+..-.... -+.|+. .-|.-++...|..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 5555555443 23444 3455677888898999999999988766543 133442 3466788889999
Q ss_pred CCHHHHHHHHHHHHHccCCCChhHHHHHHHHhhc
Q 004610 471 GKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS 504 (742)
Q Consensus 471 g~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~~ 504 (742)
...+.-+..++.|.-+..++.+-+...|......
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v 445 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDV 445 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhh
Confidence 9999999999999887666666555444433333
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=5e-09 Score=110.54 Aligned_cols=263 Identities=12% Similarity=0.026 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcc
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~ 271 (742)
.||.+||.++|+-...+.|.++|.+-.....+.+..+||.||.+-+ +....++. .||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------------~~~~K~Lv-------~EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--------------YSVGKKLV-------AEMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------------hhccHHHH-------HHHHH
Confidence 7999999999999999999999999998888999999999998866 21224455 36766
Q ss_pred cCCCC-cccccccccccccccccccccCChHHH----HHHHHHHHHcCCCCCccccchhHHhhccccccCC---------
Q 004610 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL----DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG--------- 337 (742)
Q Consensus 272 ~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A----~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~--------- 337 (742)
. .+. |..|+|+++.+ ..+.|+++.| .+++.+|++.|+.|...+|. .+|.-+|.+...
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh--~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH--LIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH--HHHHHhcccCCchhhhHHHHH
Confidence 6 565 88999999999 9999988654 78889999999999999998 666655522111
Q ss_pred -CchhhhhcCCCcCHHh---------------------------------------------hHHHHHHHHHhhcCHHHH
Q 004610 338 -PDDQSRKKDWSIDNQD---------------------------------------------ADEIRLSEDAKKYAFQRG 371 (742)
Q Consensus 338 -~~~~m~~~g~~pd~~t---------------------------------------------yn~~lI~~~~k~g~~~~A 371 (742)
+.+++..+-++|-..+ |+.-+....|....++.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222333332211 222244455555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-C--------HH---
Q 004610 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-D--------VD--- 439 (742)
Q Consensus 372 ~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g-~--------~~--- 439 (742)
+..|+.|.-+-+-|+..+-.-++++..-.|.++-.-+++..|+..|..-+...-.-++.-+|+.. + +.
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 56666666555667777777777777777777777777777776664333333333333334332 0 00
Q ss_pred --------HH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 440 --------KA-CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 440 --------~A-~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
++ ..--.+|...... ....+.+.-.+.+.|..++|.++|.-+..+
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 00 0111223333333 334455555567888888888888877443
No 16
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.98 E-value=3e-09 Score=120.76 Aligned_cols=256 Identities=13% Similarity=0.058 Sum_probs=162.0
Q ss_pred HHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCC
Q 004610 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (742)
Q Consensus 171 ~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G 250 (742)
.++-.|+..|+.|++ +||..+|.-||..|+++.|- +|.-|+-..+..+...|+.++.+.. .++
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~----------~An 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK----------EAN 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc----------ccc
Confidence 455567667777776 99999999999999999999 9999998878888899999999888 334
Q ss_pred CHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHc--CCCCCccccc-hh--
Q 004610 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL--GQFSNGHMKL-NS-- 325 (742)
Q Consensus 251 ~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~--G~~Pd~~ty~-~~-- 325 (742)
+.+.+.+. -.-||+.|+.+ |...|++.--..+=..|... .+.|..+--. ..
T Consensus 74 d~Enpkep------------------~aDtyt~Ll~a------yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl 129 (1088)
T KOG4318|consen 74 DAENPKEP------------------LADTYTNLLKA------YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFL 129 (1088)
T ss_pred cccCCCCC------------------chhHHHHHHHH------HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHH
Confidence 33322211 22368999999 99998875522211112211 0111110000 00
Q ss_pred HHhhccc---cc---------cCCCchhhhhcCC-CcCHHhhHHHHHHHHHhhc--CHHHHHHHHHHHHhCCC-CCCHHH
Q 004610 326 QLLDGRS---NL---------ERGPDDQSRKKDW-SIDNQDADEIRLSEDAKKY--AFQRGFEIYEKMCLDEV-PMNEAS 389 (742)
Q Consensus 326 ~li~~~~---~~---------a~~~~~~m~~~g~-~pd~~tyn~~lI~~~~k~g--~~~~A~~lf~~M~~~g~-~pd~~t 389 (742)
..++++- .. -+++++...+.+. .|-..-++...+ +.+.. ......++. .|.+.+. .|+..+
T Consensus 130 ~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl-~~cksl~e~~~s~~ 206 (1088)
T KOG4318|consen 130 MKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLL-NMCKSLVEAPTSET 206 (1088)
T ss_pred hhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHH-HHHHHhhcCCChHH
Confidence 0111110 00 0111222222221 111111111011 11111 111222333 3333333 499999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (742)
|.+++++...+|+.+.|..++.+|++.|+..+..-|-+||-+ .++...+..+...|.+.|+.|+..||.-.+..+.+
T Consensus 207 l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 207 LHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 999999999999999999999999999999999889999877 88888999999999999999999999888887777
Q ss_pred cCCH
Q 004610 470 AGKG 473 (742)
Q Consensus 470 ~g~~ 473 (742)
+|..
T Consensus 284 N~~t 287 (1088)
T KOG4318|consen 284 NGQT 287 (1088)
T ss_pred chhh
Confidence 6653
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.92 E-value=1e-06 Score=104.38 Aligned_cols=290 Identities=9% Similarity=-0.080 Sum_probs=172.1
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCS 237 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~ 237 (742)
.....|+..+|..+++.....-... | ..+..+..++...|++++|++.|+++... .| +...+..+-..+.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~-----~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNG-----R--DLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCc-----h--hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 3446788888888888774432111 2 23333334555678888888888887753 23 3445555556666
Q ss_pred ccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCC
Q 004610 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (742)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~P 317 (742)
..|+.++|.+.|. +.... .-.+...|..+... +...|++++|...++.+....-.+
T Consensus 122 ----------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 122 ----------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred ----------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCC
Confidence 6777888887774 33221 11133345566666 777788888888777665543222
Q ss_pred Cccccchh-HHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004610 318 NGHMKLNS-QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (742)
Q Consensus 318 d~~ty~~~-~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~ 396 (742)
....+... .+..+--.+|...+..+....-.++...+.. +...+.+.|+.++|.+.|++..... +-+...+..+-..
T Consensus 178 ~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~-l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~ 255 (656)
T PRK15174 178 GDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGL-AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLA 255 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 11111100 0011111334444444433321222222322 4566777788888888888777653 3356667777777
Q ss_pred HHHcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 004610 397 AMSMGDGDM----AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAG 471 (742)
Q Consensus 397 ~~~~g~~~~----A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g 471 (742)
+...|+.++ |...|++..+.. ..+...+..+-..+.+.|+.++|...+++..... |+ ...+..+-..|.+.|
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC
Confidence 778887775 677777766542 2235567777777777888888888887777643 33 445566667777788
Q ss_pred CHHHHHHHHHHHHHc
Q 004610 472 KGDRVYYLLHKLRTS 486 (742)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (742)
++++|...|+++...
T Consensus 333 ~~~eA~~~l~~al~~ 347 (656)
T PRK15174 333 QYTAASDEFVQLARE 347 (656)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888777655
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.75 E-value=4.8e-06 Score=98.70 Aligned_cols=281 Identities=7% Similarity=-0.049 Sum_probs=181.1
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAA 240 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~~~ 240 (742)
..++.++|.+.|+.+.+.. |+ +...|..+-..+.+.|++++|+..|+++... .| +...+..+..++.
T Consensus 88 ~~g~~~~A~~~l~~~l~~~--P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~--- 155 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVN--VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV--- 155 (656)
T ss_pred hcCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH---
Confidence 4667777777777774321 11 1244556666677777777777777777653 23 3455666666666
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ 320 (742)
..|+.++|...+. .+... ...+...+..+ .. +...|++++|..+++.+....-.++..
T Consensus 156 -------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 156 -------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred -------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 6677777777663 22221 11111112111 22 455677777777777765553222222
Q ss_pred ccchhHHhhcc-----ccccCCCchhhhhcCCCcC-HHhhHHHHHHHHHhhcCHHH----HHHHHHHHHhCCCCCCHHHH
Q 004610 321 MKLNSQLLDGR-----SNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASL 390 (742)
Q Consensus 321 ty~~~~li~~~-----~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~g~~pd~~ty 390 (742)
.+. .+...+ ..+|...+...... .|+ ...+.. +-..|...|++++ |...|++..... +-+...+
T Consensus 214 ~~~--~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~-Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~ 287 (656)
T PRK15174 214 SAG--LAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRS-LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIV 287 (656)
T ss_pred HHH--HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHH
Confidence 221 111111 13344444444433 233 344445 7788899999886 899999887753 3466789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 004610 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL-EALLRVSV 468 (742)
Q Consensus 391 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty-~~Li~~~~ 468 (742)
..+...+.+.|++++|...+++.... .|+ ...+..+-..+.+.|+.++|...++.+... .|+...+ ..+-.++.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 99999999999999999999998765 344 455666778899999999999999999875 3554443 33456789
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 004610 469 EAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (742)
..|+.++|...|++..+.
T Consensus 364 ~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999998765
No 19
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.4e-08 Score=70.91 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=13.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (742)
Q Consensus 382 g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M 413 (742)
|+.||.+|||+||++||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
No 20
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=1.8e-08 Score=70.34 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=18.9
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 417 g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55555555555555555555555555555555
No 21
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.62 E-value=6.1e-07 Score=102.50 Aligned_cols=242 Identities=13% Similarity=0.044 Sum_probs=156.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccc
Q 004610 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (742)
Q Consensus 212 ~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~ 290 (742)
.++..|...|+.|+.+||..||.-|| ..|+++.|- +|. -|..+ ..+ +...++.++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 46778889999999999999999999 788888887 774 23333 444 66678999988
Q ss_pred cccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCC-Cchhhh--------------------------
Q 004610 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG-PDDQSR-------------------------- 343 (742)
Q Consensus 291 ~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~-~~~~m~-------------------------- 343 (742)
...+++.+.+. .|-.-||+ .|..+|.....- .|+...
T Consensus 69 ---h~~And~Enpk-----------ep~aDtyt--~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~ 132 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTYT--NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKI 132 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHHH--HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhc
Confidence 77778777765 46666666 555555411000 011100
Q ss_pred --hcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004610 344 --KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (742)
Q Consensus 344 --~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (742)
..+..||..+ .|--..-.|.++.+.+++..|... -..|-.+ .|+-+.... .-..++....+...-.|
T Consensus 133 ~c~p~~lpda~n----~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~ 202 (1088)
T KOG4318|consen 133 HCCPHSLPDAEN----AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAP 202 (1088)
T ss_pred ccCcccchhHHH----HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCC
Confidence 1112222211 222233334444444444443321 1112111 133333222 22334444443322259
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHH-
Q 004610 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV- 497 (742)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~- 497 (742)
+..+|.+++++-..+|+++.|..++.+|.+.|+..+..-|-.||-+ .+...-+..++..|++. |+.|+ |+..
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~ady 277 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADY 277 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHH
Confidence 9999999999999999999999999999999999999999999977 88888999999999999 66665 7766
Q ss_pred HHHHhhchH
Q 004610 498 IAKWFNSKE 506 (742)
Q Consensus 498 I~~~~~~~~ 506 (742)
+...++.+.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 777777544
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.61 E-value=1.3e-05 Score=94.56 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=186.5
Q ss_pred cCcchHHHHHHHHHhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcccc
Q 004610 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (742)
Q Consensus 164 ~~~~~A~~v~~~m~~~g~~~~~~~~P-~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~ 241 (742)
++.++|.+.|+...+.+ ...| +...|+.+-..+...|++++|+..|++..+. .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 56778999999886544 1122 3467788888888999999999999998864 454 557777777777
Q ss_pred CCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccc
Q 004610 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (742)
Q Consensus 242 ~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~t 321 (742)
..|+.++|...|. +..+. .-.+...|..+-.. +...|++++|...|++..+. .|+.
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l--~P~~-- 432 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDL--DPDF-- 432 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHc--CccC--
Confidence 7899999999995 33332 22234446556556 78899999999999887664 2322
Q ss_pred cchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004610 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (742)
Q Consensus 322 y~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g 401 (742)
...|.. +-..+.+.|++++|+..|++..... +-+...|+.+-..+...|
T Consensus 433 -----------------------------~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 433 -----------------------------IFSHIQ-LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred -----------------------------HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 122223 6677889999999999999987642 345788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004610 402 DGDMAFDMVKRMKSLGINPRL--------RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (742)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~--------~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (742)
++++|.+.|++..... |+. ..++..+..+-..|++++|.+++++..... .-+...+..|...+.+.|++
T Consensus 482 ~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 9999999999876542 221 112222333444699999999999987654 23445788999999999999
Q ss_pred HHHHHHHHHHHHc
Q 004610 474 DRVYYLLHKLRTS 486 (742)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (742)
++|..+|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988665
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.57 E-value=2.7e-07 Score=97.65 Aligned_cols=255 Identities=16% Similarity=0.102 Sum_probs=101.5
Q ss_pred HhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVEL-DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 161 ~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI-~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
-+.++..+|+++++.-.... .+|+-..|-.++ ..+-..++.+.|++.|+++...+-. ++..|..++.. .
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~-- 88 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L-- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc-ccccccccccc-c--
Confidence 36788899999996542211 123324444444 4555678999999999999866533 55567777666 5
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~ 319 (742)
..++.++|.+++. +..+. ..+...+..++.. +.+.++++++..++++.....-.|+
T Consensus 89 --------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~- 144 (280)
T PF13429_consen 89 --------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPD- 144 (280)
T ss_dssp ----------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T-
T ss_pred --------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCC-
Confidence 5677888888773 22111 1133345566666 7788899999998888765321111
Q ss_pred cccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 004610 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAM 398 (742)
Q Consensus 320 ~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~Li~~~~ 398 (742)
+...|.. +-..+.+.|+.++|.+++++..+.. | |....+.++..+.
T Consensus 145 ------------------------------~~~~~~~-~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 145 ------------------------------SARFWLA-LAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLI 191 (280)
T ss_dssp -------------------------------HHHHHH-HHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred ------------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 2222223 5567788999999999999887753 5 5778888999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004610 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (742)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (742)
..|+.+++.++++...+.. ..|...+..+-.+|...|+.++|...+++..... .-|......+-+++...|+.++|.+
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 9999999888888877663 4556667788888889999999999999987643 3367777888899999999999998
Q ss_pred HHHHHH
Q 004610 479 LLHKLR 484 (742)
Q Consensus 479 ll~~M~ 484 (742)
+.++.-
T Consensus 270 ~~~~~~ 275 (280)
T PF13429_consen 270 LRRQAL 275 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 877653
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.52 E-value=5.6e-05 Score=75.92 Aligned_cols=201 Identities=16% Similarity=0.094 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhc
Q 004610 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (742)
Q Consensus 191 ~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~ 270 (742)
...+..+...+...|++++|.+.|++..+.. +.+...+..+-..+. ..|+.++|.+.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~----------~~~~~~~A~~~~----------- 88 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQ----------QLGELEKAEDSF----------- 88 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHH-----------
Confidence 4667777888899999999999999887643 223445555555555 445555555555
Q ss_pred ccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcC
Q 004610 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (742)
Q Consensus 271 ~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd 350 (742)
++..+.. |+ +
T Consensus 89 -------------------------------------~~al~~~--~~-------------------------------~ 98 (234)
T TIGR02521 89 -------------------------------------RRALTLN--PN-------------------------------N 98 (234)
T ss_pred -------------------------------------HHHHhhC--CC-------------------------------C
Confidence 3333321 11 1
Q ss_pred HHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004610 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (742)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~-pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (742)
...+.. +...+...|++++|.+.|++....... .+...+..+...+...|+.++|.+.+.+..... ..+...+..+.
T Consensus 99 ~~~~~~-~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 176 (234)
T TIGR02521 99 GDVLNN-YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELA 176 (234)
T ss_pred HHHHHH-HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHH
Confidence 112223 556677888888888888887764222 234566667778888889999988888876552 22456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..+...|+.++|...+++.... ...+...+..+...+...|+.++|..+.+.+...
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888889999999888888776 3445666777778888888888888887777543
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.44 E-value=3.3e-05 Score=86.11 Aligned_cols=276 Identities=8% Similarity=-0.012 Sum_probs=183.8
Q ss_pred hcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHccc
Q 004610 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVL--LYLCSSAA 240 (742)
Q Consensus 163 ~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~L--L~~~~~~~ 240 (742)
.|+...|.+....-.+ ..-.|. ..|-....+..+.|+++.|.+.|.++.+ ..|+...+-.+ -..+.
T Consensus 97 eGd~~~A~k~l~~~~~------~~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD------HAEQPV-VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHh------cccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH---
Confidence 4888889888776522 111233 4454445556899999999999999975 45665544422 33455
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ 320 (742)
..|+.+.|...++ ++.+. .-.+......+... +.+.|++++|.+++..+.+.+..++..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 6799999999995 44443 22244446667777 999999999999999999987654331
Q ss_pred -------ccchhHHhh-cccccc----CCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHH
Q 004610 321 -------MKLNSQLLD-GRSNLE----RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (742)
Q Consensus 321 -------ty~~~~li~-~~~~~a----~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ 388 (742)
+|. .++. +..... ..++..+... ...+...... +...+...|+.++|.+++++..+. .||..
T Consensus 224 ~~~l~~~a~~--~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~-~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 224 RAMLEQQAWI--GLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVA-MAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 111 1111 000100 0111111111 1112223333 778888999999999999888774 45552
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (742)
-.++.+.+..++.+++++..+...+. .|+. ..+..+=..|.+.|++++|.+.|+...+. .|+..+|..|-..+
T Consensus 298 --l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~ 371 (398)
T PRK10747 298 --LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL 371 (398)
T ss_pred --HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 22344555668999999999888765 2444 44556667788889999999999998865 59999989999999
Q ss_pred HHcCCHHHHHHHHHHH
Q 004610 468 VEAGKGDRVYYLLHKL 483 (742)
Q Consensus 468 ~~~g~~~~A~~ll~~M 483 (742)
.+.|+.++|.+++++=
T Consensus 372 ~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 372 DRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999998888754
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.40 E-value=7e-05 Score=94.74 Aligned_cols=295 Identities=11% Similarity=-0.002 Sum_probs=157.5
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
...+.++.++|.+.|++..+.. | .+...+..+-..+...|++++|++.|++..+.. +.+...+..+...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~--P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD--N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3457789999999999986531 1 234677778899999999999999999998642 2234444444433321
Q ss_pred cccC--------------------------------CcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccc
Q 004610 239 AAVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSS 286 (742)
Q Consensus 239 ~~~~--------------------------------~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~ 286 (742)
.... ...+...|+.++|+..|. +.... ...+...+..+-.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~ 503 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQ 503 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHH
Confidence 0000 000114678888888884 33322 1112223444555
Q ss_pred cccccccccccCChHHHHHHHHHHHHcCCCCCccc--cchhHHhhccc--cccCCCchhhhhcCCCcCHHh---------
Q 004610 287 PMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM--KLNSQLLDGRS--NLERGPDDQSRKKDWSIDNQD--------- 353 (742)
Q Consensus 287 ~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~t--y~~~~li~~~~--~~a~~~~~~m~~~g~~pd~~t--------- 353 (742)
. +.+.|++++|...|++..+. .|+... |..+.+..... .+|...+..+......++...
T Consensus 504 ~------~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 504 D------LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred H------HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 5 88899999999999988764 243221 21111111000 112222222211111111100
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (742)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (742)
+-. +...+...|+.++|.++++. .+.+...+..+...+.+.|+.++|.+.|++..+.. ..+...+..+...|.
T Consensus 576 ~l~-~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~ 648 (1157)
T PRK11447 576 VLE-TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDI 648 (1157)
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 001 23445556666666666551 13344445556666666666666666666655441 123455555666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 434 NNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..|+.++|.+.++...+. .| +...+..+-..+...|+.++|.++++++...
T Consensus 649 ~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 666666666666655432 22 2333444555555666666666666665543
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.39 E-value=9.3e-05 Score=87.42 Aligned_cols=301 Identities=10% Similarity=-0.035 Sum_probs=174.3
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSS 238 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~ 238 (742)
.-+.++..+|.+.|+...+ ..|+...|.-+-.+|.+.|++++|++.++...+. .| +...|..+-.+|.
T Consensus 137 ~~~~~~~~~Ai~~y~~al~--------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~- 205 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIE--------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD- 205 (615)
T ss_pred HHHcCCHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH-
Confidence 4467899999999999743 3355578888889999999999999999998864 34 4567777777787
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccc-----------------------hhh-cccCCCCcccc----c---------
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNS-----------------------TEL-GDSRDMDNNGQ----L--------- 281 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s-----------------------~em-~~~~g~~~~vt----y--------- 281 (742)
..|++++|+..|....... .+. .....-.+..+ |
T Consensus 206 ---------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 206 ---------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred ---------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 7888888876553110000 000 00000000000 0
Q ss_pred ----cc-------ccccc----cccccccccCChHHHHHHHHHHHHcC-CCCCc-cccc-hhHH--hhccccccCCCchh
Q 004610 282 ----DY-------GSSPM----IDKLESNSSYRFDDLDSTFNEKENLG-QFSNG-HMKL-NSQL--LDGRSNLERGPDDQ 341 (742)
Q Consensus 282 ----n~-------lI~~~----~~~~~~~~~g~~~~A~~lf~~M~~~G-~~Pd~-~ty~-~~~l--i~~~~~~a~~~~~~ 341 (742)
.. +..+. ....+....+.+++|...|++..+.+ ..|+. ..|. .+.+ ..+--.+|...+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 00000 00000112356778888888777665 22322 2222 0000 01111333334444
Q ss_pred hhhcCCCcCH-HhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004610 342 SRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (742)
Q Consensus 342 m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (742)
... ..|+. ..|.. +-..+...|++++|.+.|++..... +-+..+|..+...+...|++++|...|++..+.. ..
T Consensus 357 al~--l~P~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 357 SIE--LDPRVTQSYIK-RASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHH--cCCCcHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 333 23442 24444 5566667777777777777765542 3345667777777777777777777777765442 12
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+...|..+-..+.+.|+.++|...|++..... .-+...|+.+-..+...|++++|.+.|++-...
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34555556666677777777777777766532 223566677777777777777777777776554
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.37 E-value=2.8e-06 Score=89.89 Aligned_cols=229 Identities=16% Similarity=0.105 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCC
Q 004610 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (742)
Q Consensus 196 ~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~ 275 (742)
.+-..+.+.|++++|++++++-....-.|+...|-.++.-++. ..|+.+.|...+. ++... +-
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~ 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-cc
Confidence 3356678899999999999765544335666666555554441 4577888888884 44432 21
Q ss_pred CcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhH
Q 004610 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (742)
Q Consensus 276 ~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn 355 (742)
.+...|..++. +...+++++|.+++.+.-+.. ++.. .+.
T Consensus 76 ~~~~~~~~l~~-------l~~~~~~~~A~~~~~~~~~~~--~~~~--------------------------------~l~ 114 (280)
T PF13429_consen 76 ANPQDYERLIQ-------LLQDGDPEEALKLAEKAYERD--GDPR--------------------------------YLL 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc-------ccccccccccccccccccccc--cccc--------------------------------hhh
Confidence 12222333332 336778888888776554432 1111 122
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH
Q 004610 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (742)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~ 433 (742)
. ++..+.+.++++++.+++++.... ..+.|...|..+...+.+.|+.++|.+.+++..+. .|+ ....+.++..+.
T Consensus 115 ~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 115 S-ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI 191 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 3 667788999999999999998753 34568888999999999999999999999998765 364 677888999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..|+.+++.++++...... ..|...+..+-.+|...|+.++|..+|++....
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 9999999999998887664 455667889999999999999999999998875
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.37 E-value=0.00014 Score=88.13 Aligned_cols=288 Identities=8% Similarity=-0.010 Sum_probs=174.6
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
....++..+|.++++...+. .+.+...+..+...+.+.|++++|+..+++..+. -+.+.. +..+-.++.
T Consensus 59 ~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~-- 127 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSL-------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK-- 127 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH--
Confidence 44677888888888886432 1122345667777888888888888888888765 223444 666666666
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~ 319 (742)
..|+.++|+..+. +..+. ...+...+..+... +...|..++|...++.... .|+.
T Consensus 128 --------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~~ 182 (765)
T PRK10049 128 --------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPAE 182 (765)
T ss_pred --------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHHH
Confidence 7788888888884 33332 12222223334444 5566777777777764332 2221
Q ss_pred ccc----chhHHhhcc-------------ccccCCCchhhhhc-CCCcCHH-hhHHHH---HHHHHhhcCHHHHHHHHHH
Q 004610 320 HMK----LNSQLLDGR-------------SNLERGPDDQSRKK-DWSIDNQ-DADEIR---LSEDAKKYAFQRGFEIYEK 377 (742)
Q Consensus 320 ~ty----~~~~li~~~-------------~~~a~~~~~~m~~~-g~~pd~~-tyn~~l---I~~~~k~g~~~~A~~lf~~ 377 (742)
... ....++... .+.|...++.+... .-.|+.. .+.... +..+...|++++|.+.|+.
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 000 000111000 01222333344422 1223221 111111 2344566899999999999
Q ss_pred HHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 378 MCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 378 M~~~g~~-pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
+...+-. |+..- -.+...|...|++++|+.+|+++.... |. ...+..+..++...|+.++|.++++.+.+.
T Consensus 263 ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 263 LKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred hhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 9887632 43222 224678889999999999999876542 22 234556666788999999999999998865
Q ss_pred C-----------CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 452 G-----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 452 g-----------v~pd~---~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
. -.|+. ..+..+...+...|+.++|.++++++...
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 12342 24456667788899999999999998776
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.36 E-value=8.5e-05 Score=83.18 Aligned_cols=281 Identities=9% Similarity=-0.023 Sum_probs=181.3
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLCSS 238 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~-~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~--tyn~LL~~~~~ 238 (742)
..|+...|.+.+....+. .|+ ...|-..-.+..+.|+.+.|.+.|.+..+.- |+.. .--+....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l- 164 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL- 164 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH-
Confidence 568999999999776321 232 2333444566788899999999999987543 4432 2223355555
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
..|+.+.|...+. ++.+. ...+...+-.+... +.+.|++++|.+++....+.++.+.
T Consensus 165 ---------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 165 ---------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 6799999999995 55554 33333345566666 8999999999999999999975433
Q ss_pred ccccc------hhHHhhccccccCCCchhhhhcCCCc-----CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH
Q 004610 319 GHMKL------NSQLLDGRSNLERGPDDQSRKKDWSI-----DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE 387 (742)
Q Consensus 319 ~~ty~------~~~li~~~~~~a~~~~~~m~~~g~~p-----d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~ 387 (742)
..... .+.+-.+....+...+..+... .| +...+-. +...+...|+.++|.+++++..+.. ||.
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~--~p~~~~~~~~l~~~-~a~~l~~~g~~~~A~~~l~~~l~~~--pd~ 296 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN--QPRHRRHNIALKIA-LAEHLIDCDDHDSAQEIIFDGLKKL--GDD 296 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--CCHHHhCCHHHHHH-HHHHHHHCCChHHHHHHHHHHHhhC--CCc
Confidence 32211 0001111111111122222221 12 4444444 7788899999999999999888753 443
Q ss_pred HHH-HHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004610 388 ASL-TAVGRMA--MSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (742)
Q Consensus 388 ~ty-n~Li~~~--~~~g~~~~A~~l~~~M~~~g~~Pd~~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (742)
... -.++..+ ...++.+.+.+.++...+. .|+.. ...++=..+.+.|++++|.+.|+........|+...+.
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 321 0123322 3456777888888776544 34444 33455566778899999999999644445578988888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 004610 462 ALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M 483 (742)
.|-..+.+.|+.++|.+++++-
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999888864
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.23 E-value=0.00089 Score=81.08 Aligned_cols=291 Identities=9% Similarity=-0.048 Sum_probs=187.7
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCS 237 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~ 237 (742)
.+.+.++.++|...+++..+. .| .+.. +..+-.++...|+.++|+..|+++.+. .| +...+..+..++.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345789999999999998543 12 2234 778888899999999999999999875 34 4444555666666
Q ss_pred ccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCC----CC----cccccccccccccccccccccCCh---HHHHHH
Q 004610 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD----MD----NNGQLDYGSSPMIDKLESNSSYRF---DDLDST 306 (742)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g----~~----~~vtyn~lI~~~~~~~~~~~~g~~---~~A~~l 306 (742)
..|..++|+..+... ...++ +. ....-..+... ....+++ ++|...
T Consensus 162 ----------~~~~~e~Al~~l~~~-------~~~p~~~~~l~~~~~~~~~r~~~~~~------~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 162 ----------NNRLSAPALGAIDDA-------NLTPAEKRDLEADAAAELVRLSFMPT------RSEKERYAIADRALAQ 218 (765)
T ss_pred ----------HCCChHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHhhcccc------cChhHHHHHHHHHHHH
Confidence 667888888887521 11100 00 00000111111 2333445 778888
Q ss_pred HHHHHHc-CCCCCccc-cc------hhH-HhhccccccCCCchhhhhcCCC-cCH-HhhHHHHHHHHHhhcCHHHHHHHH
Q 004610 307 FNEKENL-GQFSNGHM-KL------NSQ-LLDGRSNLERGPDDQSRKKDWS-IDN-QDADEIRLSEDAKKYAFQRGFEIY 375 (742)
Q Consensus 307 f~~M~~~-G~~Pd~~t-y~------~~~-li~~~~~~a~~~~~~m~~~g~~-pd~-~tyn~~lI~~~~k~g~~~~A~~lf 375 (742)
++.+.+. ...|+... +. .+. +..+-..+|...|..+...+-. |+- ..+ +-..|...|++++|..+|
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~---la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW---VASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH---HHHHHHhcCCcHHHHHHH
Confidence 8888764 33343321 11 001 1122225566677777766422 332 222 346788899999999999
Q ss_pred HHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCC---hhhHHHHHHHHHHcCCH
Q 004610 376 EKMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----------INPR---LRSYGPALSVFCNNGDV 438 (742)
Q Consensus 376 ~~M~~~g~~p---d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g-----------~~Pd---~~ty~~lI~~~~~~g~~ 438 (742)
+++....-.. ....+..|..++...|++++|..+++.+.... -.|+ ...+..+...+...|+.
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 9876543111 13456667778889999999999999887652 1123 22345566778888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
++|.++++++.... .-+...+..+...+...|+.++|.+++++....
T Consensus 376 ~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 376 PQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 99999999987653 335667788888888999999999999988765
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=0.00042 Score=71.93 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=85.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVF 432 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~ 432 (742)
|+.-|-+..++++|+++-+++.+.|-.+.. .-|.-|...+....+++.|..+++.-.+. .|+.+--++++ ..+
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~ 224 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHH
Confidence 667777777777777777777665543332 23445555555566777777777665544 23333333333 345
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
...|+.++|.+.++...+.+..--..+...|..+|...|+.++....+.++.+...|+.+.
T Consensus 225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 5677777777777777777655555666777777777777777777777777765555554
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.20 E-value=0.00059 Score=86.46 Aligned_cols=253 Identities=10% Similarity=0.046 Sum_probs=175.8
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
+...++.++|.+.|++..+.. |+ +...+..+...|.+.|++++|+..|+++.+.. +-+...+-.+...+.
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~--P~-----~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~-- 540 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD--PG-----SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS-- 540 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH--
Confidence 446789999999999985431 11 33567778889999999999999999988632 113333333333344
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccc----------ccccccccccccccccccCChHHHHHHHHH
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG----------QLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~v----------tyn~lI~~~~~~~~~~~~g~~~~A~~lf~~ 309 (742)
..|+.++|...+. .+... ...+.. .+-.+... +...|+.++|..+++.
T Consensus 541 --------~~~~~~~Al~~l~-------~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~------l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 541 --------GSDRDRAALAHLN-------TLPRA-QWNSNIQELAQRLQSDQVLETANR------LRDSGKEAEAEALLRQ 598 (1157)
T ss_pred --------hCCCHHHHHHHHH-------hCCch-hcChhHHHHHHHHhhhHHHHHHHH------HHHCCCHHHHHHHHHh
Confidence 6688899999885 22111 000000 00111223 5677888888887761
Q ss_pred HHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHH
Q 004610 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (742)
Q Consensus 310 M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t 389 (742)
.|+.. ..+.. +-..|.+.|+.++|++.|++..... +-+...
T Consensus 599 ------~p~~~-------------------------------~~~~~-La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a 639 (1157)
T PRK11447 599 ------QPPST-------------------------------RIDLT-LADWAQQRGDYAAARAAYQRVLTRE-PGNADA 639 (1157)
T ss_pred ------CCCCc-------------------------------hHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 22211 11223 6678889999999999999988763 446889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YP---EEPELEAL 463 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~p---d~~ty~~L 463 (742)
+..+...+...|+.++|.+.++...+. .|+ ..++..+-.++...|+.++|.++++.+....- .| +...+..+
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDA 717 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHH
Confidence 999999999999999999999977643 343 44555566778899999999999999986532 22 23456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 004610 464 LRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~ 485 (742)
-..+.+.|+.++|..+|++-..
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7788999999999999988754
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.13 E-value=0.00019 Score=79.69 Aligned_cols=281 Identities=11% Similarity=0.011 Sum_probs=170.1
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.+.+.|+..+|+.+++.+.+.. | -.+..|--+-.++...|+...|...|.+..+ +.|+.+...+-+.-+.+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p-----~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--P-----KFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--c-----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 4558899999999999996632 1 1346888899999999999999999998875 45776655554444442
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
..|++++|..-+. ..++..+. =.+.|+-|=.. +-..|+...|..-|++-... .|+
T Consensus 196 ---------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 196 ---------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred ---------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCc
Confidence 3477888877774 22222211 22345555444 66788888898888876654 232
Q ss_pred cc--ccchhHHhhccccccCCCchhh-----hhcCCCcC-HHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCC-HHH
Q 004610 319 GH--MKLNSQLLDGRSNLERGPDDQS-----RKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EAS 389 (742)
Q Consensus 319 ~~--ty~~~~li~~~~~~a~~~~~~m-----~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~t 389 (742)
-. -+|.|.+.. +.+.|+.. ......|+ .+.|.+ |-..|-..|.+|-|++.+++-.+. .|+ ...
T Consensus 251 f~dAYiNLGnV~k-----e~~~~d~Avs~Y~rAl~lrpn~A~a~gN-la~iYyeqG~ldlAI~~Ykral~~--~P~F~~A 322 (966)
T KOG4626|consen 251 FLDAYINLGNVYK-----EARIFDRAVSCYLRALNLRPNHAVAHGN-LACIYYEQGLLDLAIDTYKRALEL--QPNFPDA 322 (966)
T ss_pred chHHHhhHHHHHH-----HHhcchHHHHHHHHHHhcCCcchhhccc-eEEEEeccccHHHHHHHHHHHHhc--CCCchHH
Confidence 11 111111111 11112111 12233443 233444 555566677777777777776553 343 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSV 468 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~ 468 (742)
||.|..++-..|++.+|.+.++...... .-...+-+-|=..|...|.+++|..+|....+ +.|+ ....|-|-..|-
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYK 399 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHH
Confidence 7777777777777777777777655431 11233444566667777777777777766553 2343 234556666666
Q ss_pred HcCCHHHHHHHHHHHH
Q 004610 469 EAGKGDRVYYLLHKLR 484 (742)
Q Consensus 469 ~~g~~~~A~~ll~~M~ 484 (742)
+.|++++|...+++-.
T Consensus 400 qqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEAL 415 (966)
T ss_pred hcccHHHHHHHHHHHH
Confidence 7777777776666553
No 35
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=3.1e-06 Score=58.79 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~ 226 (742)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.09 E-value=0.00076 Score=82.77 Aligned_cols=230 Identities=8% Similarity=-0.026 Sum_probs=166.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhh
Q 004610 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (742)
Q Consensus 190 ~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em 269 (742)
+...|..+-.++.. |++.+|+..|.+.... .|+......+...+. ..|+.++|...|. ++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 44666666666665 8999999988887754 377554333444445 7799999999995 33
Q ss_pred cccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCc
Q 004610 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (742)
Q Consensus 270 ~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (742)
... . .+...+..+... +.+.|++++|...+++..+.. |+....
T Consensus 536 ~~~-~-p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l--------------------------- 578 (987)
T PRK09782 536 SLH-D-MSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL--------------------------- 578 (987)
T ss_pred hcc-C-CCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------------
Confidence 322 1 111223333334 678899999999999887653 322111
Q ss_pred CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHH
Q 004610 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPA 428 (742)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~l 428 (742)
+.. +.....+.|++++|...|++.... .|+...|..+-..+.+.|+.++|...+++.... .|+ ...++.+
T Consensus 579 ----~~~-La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 579 ----YWW-LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ----HHH-HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 111 223334569999999999998865 478889999999999999999999999997765 354 4556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
-..+...|+.++|..++++..+.. .-+...+..+-.++...|++++|...|++..+.
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 668999999999999999988753 234667888889999999999999999998765
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.07 E-value=0.0014 Score=65.73 Aligned_cols=192 Identities=11% Similarity=0.030 Sum_probs=134.0
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.....++..+|.+.+++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+-..+.
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~- 110 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC- 110 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH-
Confidence 3446789999999999885431 1234678888899999999999999999988653 223444444444444
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
..|+.++|...| .+.......|.
T Consensus 111 ---------~~g~~~~A~~~~------------------------------------------------~~~~~~~~~~~ 133 (234)
T TIGR02521 111 ---------QQGKYEQAMQQF------------------------------------------------EQAIEDPLYPQ 133 (234)
T ss_pred ---------HcccHHHHHHHH------------------------------------------------HHHHhcccccc
Confidence 444455555444 44433211010
Q ss_pred ccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004610 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (742)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~ 398 (742)
....+.. +-..+...|++++|.+.|++..... +.+...+..+...+.
T Consensus 134 -------------------------------~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 134 -------------------------------PARSLEN-AGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYY 180 (234)
T ss_pred -------------------------------chHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 0111223 5566788899999999999887653 334667888889999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (742)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (742)
..|+.++|...+++.... ...+...+..+...+...|+.++|..+.+.+..
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999998776 344566777778888889999999998887764
No 38
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=5e-06 Score=57.64 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p 224 (742)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999998
No 39
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=6.9e-06 Score=57.04 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004610 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (742)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (742)
|||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555556555655556666655555555554
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.04 E-value=0.0016 Score=78.36 Aligned_cols=288 Identities=10% Similarity=-0.042 Sum_probs=176.1
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
....++..+|.++|+.+.+.. |+. | ..+..++..+...++.++|++.+.++... .|+...|-.++..+.
T Consensus 112 y~~~gdyd~Aiely~kaL~~d--P~n---~--~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~-- 180 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD--PTN---P--DLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR-- 180 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC--CCC---H--HHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH--
Confidence 335578888888888885432 111 2 44456677788888888888888887654 456666644444443
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~ 319 (742)
..++..+|++.+. ++.+. .-.+.-.+.-++.+ +.+.|-...|.++..+ .|+.
T Consensus 181 --------~~~~~~~AL~~~e-------kll~~-~P~n~e~~~~~~~~------l~~~~~~~~a~~l~~~------~p~~ 232 (822)
T PRK14574 181 --------ATDRNYDALQASS-------EAVRL-APTSEEVLKNHLEI------LQRNRIVEPALRLAKE------NPNL 232 (822)
T ss_pred --------hcchHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCcHHHHHHHHh------Cccc
Confidence 2344444777773 44443 21122222333333 4455555555544432 2333
Q ss_pred cccc---------hhHHh-hccc------------cccCCCchhhhh-cCCCc-CHHhhHHHH---HHHHHhhcCHHHHH
Q 004610 320 HMKL---------NSQLL-DGRS------------NLERGPDDQSRK-KDWSI-DNQDADEIR---LSEDAKKYAFQRGF 372 (742)
Q Consensus 320 ~ty~---------~~~li-~~~~------------~~a~~~~~~m~~-~g~~p-d~~tyn~~l---I~~~~k~g~~~~A~ 372 (742)
++-. ...++ .+.. +.+..-++.+.. .+-.| ...-|..+. +-++.+.|++.+++
T Consensus 233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3222 00011 1100 011111222221 12223 222233333 35667888999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (742)
Q Consensus 373 ~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (742)
+.|+.|...|.+.-..+--++.++|...+++++|+.++++..... ..++......|.-+|...+++++|..++++
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999999877556688899999999999999999999986542 233455567899999999999999999999
Q ss_pred HHHCC-------------CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 448 MLEHG-------------VYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 448 M~~~g-------------v~pd~~ty-~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+.+.- -.||-..+ ..++..+...|+..+|.++++++...
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 98731 12333333 34566688999999999999999766
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.99 E-value=0.0018 Score=77.97 Aligned_cols=283 Identities=9% Similarity=-0.059 Sum_probs=176.1
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HH
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ--FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVL---LY 234 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~--~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~L---L~ 234 (742)
..+.|+...|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++.. .|+...|..+ -.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 44778889999999998432 2221 233 88888899999999999999987 4433333333 33
Q ss_pred HHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcC
Q 004610 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (742)
Q Consensus 235 ~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G 314 (742)
.+. ..|+.++|+++|. ++.+. .-.+.-.+..++.. +.+.++.++|++.++.....
T Consensus 111 ly~----------~~gdyd~Aiely~-------kaL~~-dP~n~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~- 165 (822)
T PRK14574 111 AYR----------NEKRWDQALALWQ-------SSLKK-DPTNPDLISGMIMT------QADAGRGGVVLKQATELAER- 165 (822)
T ss_pred HHH----------HcCCHHHHHHHHH-------HHHhh-CCCCHHHHHHHHHH------HhhcCCHHHHHHHHHHhccc-
Confidence 555 6799999999995 55554 33333334455555 78889999999999988765
Q ss_pred CCCCccccchhHHhhcc---c--cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHH----------
Q 004610 315 QFSNGHMKLNSQLLDGR---S--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC---------- 379 (742)
Q Consensus 315 ~~Pd~~ty~~~~li~~~---~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~---------- 379 (742)
.|+...|- .+..-+ . ..|...+.++... .|+...+-.-++....+.|-...|.++..+-.
T Consensus 166 -dp~~~~~l--~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 166 -DPTVQNYM--TLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred -CcchHHHH--HHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 45544442 221111 1 2355567777764 46554443336666777776666655443211
Q ss_pred --------------------------------------h-CCCCCCH-HHH-HHH---HHHHHHcCCHHHHHHHHHHHHH
Q 004610 380 --------------------------------------L-DEVPMNE-ASL-TAV---GRMAMSMGDGDMAFDMVKRMKS 415 (742)
Q Consensus 380 --------------------------------------~-~g~~pd~-~ty-n~L---i~~~~~~g~~~~A~~l~~~M~~ 415 (742)
. .+-.|.. .-| .+. +-++.+.|+..++.+.++.|..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 1 0111211 111 111 2255567777777777777777
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 416 ~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
.|...-.++--.+-++|...+..++|..+|+...... ..++......|.-+|...+++++|..+++++.+
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 7654333455567777777777777777777775432 123444456777777777777777777777776
No 42
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=9.9e-06 Score=56.12 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (742)
|||++|++|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.90 E-value=0.0026 Score=78.23 Aligned_cols=217 Identities=11% Similarity=0.019 Sum_probs=154.0
Q ss_pred cCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCC
Q 004610 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV 243 (742)
Q Consensus 164 ~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~ 243 (742)
++.++|...+..-... .|+......+...+...|++++|...|+++... .|+...+..+..++.
T Consensus 490 ~~~~eAi~a~~~Al~~--------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all------ 553 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ------ 553 (987)
T ss_pred CCcHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH------
Confidence 6777888877776332 244344334445556899999999999997543 455555656666677
Q ss_pred cccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccc
Q 004610 244 VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (742)
Q Consensus 244 ~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~ 323 (742)
+.|+.++|...+. ..... +..+...+..+... ....|++++|...+++..+. .|+
T Consensus 554 ----~~Gd~~eA~~~l~-------qAL~l-~P~~~~l~~~La~~------l~~~Gr~~eAl~~~~~AL~l--~P~----- 608 (987)
T PRK09782 554 ----AAGNGAARDRWLQ-------QAEQR-GLGDNALYWWLHAQ------RYIPGQPELALNDLTRSLNI--APS----- 608 (987)
T ss_pred ----HCCCHHHHHHHHH-------HHHhc-CCccHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CCC-----
Confidence 7899999999995 33322 11111111111112 23459999999999887654 233
Q ss_pred hhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004610 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (742)
Q Consensus 324 ~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~ 403 (742)
...|.. +-..+.+.|+.++|.+.|++..... +-+...++.+-..+...|+.
T Consensus 609 ---------------------------~~a~~~-LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 609 ---------------------------ANAYVA-RATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred ---------------------------HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 233445 6778899999999999999988764 34567788888899999999
Q ss_pred HHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 404 DMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 404 ~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
++|+.++++..+. .| +...+..+-.++...|+.++|...+++..+..
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999987765 34 45667778888999999999999999988653
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.85 E-value=0.0018 Score=72.32 Aligned_cols=219 Identities=8% Similarity=-0.034 Sum_probs=153.6
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHH
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNV 231 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~-------~tyn~ 231 (742)
.....++.+.|.+.++++.+.. | -+...+..+...|.+.|++++|++++..+.+.+..++. .+|..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~--P-----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA--P-----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--C-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3446789999999999985432 1 13377888999999999999999999999987765322 12333
Q ss_pred HHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHHHHHHHH
Q 004610 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (742)
Q Consensus 232 LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M 310 (742)
++.... .....+...++.. ++.+. .+ +.-..-.+... +...|+.++|.+++++.
T Consensus 235 l~~~~~----------~~~~~~~l~~~w~-------~lp~~--~~~~~~~~~~~A~~------l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 235 LMDQAM----------ADQGSEGLKRWWK-------NQSRK--TRHQVALQVAMAEH------LIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHH----------HhcCHHHHHHHHH-------hCCHH--HhCCHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 333322 2222333333332 11111 01 22223344445 78899999999999877
Q ss_pred HHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHH
Q 004610 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (742)
Q Consensus 311 ~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty 390 (742)
.+. .||.. .+++.+.+..++.+++.+..+...+.. +-|...+
T Consensus 290 l~~--~~~~~-----------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 290 LKR--QYDER-----------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred Hhc--CCCHH-----------------------------------HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 663 22221 114455566799999999999988763 3455678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (742)
Q Consensus 391 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (742)
.++-+.|.+.|++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+++++-.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999998765 6999999999999999999999999998654
No 45
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=2.4e-05 Score=52.84 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi 222 (742)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 46
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.76 E-value=0.021 Score=65.38 Aligned_cols=298 Identities=11% Similarity=0.041 Sum_probs=186.1
Q ss_pred HHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004610 158 QKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (742)
Q Consensus 158 ~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (742)
..+.+.|+.++|++.+++-... +...+..+-..-..+.+.|+.++|..+|..+.+.+ |+-..|-..+..+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 3556889999999999875221 22223455566688899999999999999999875 66666665555554
Q ss_pred ccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCCh-HHHHHHHHHHHHcCCC
Q 004610 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQF 316 (742)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~-~~A~~lf~~M~~~G~~ 316 (742)
.... .-.....+....+++ ++.....-.+.+-.=.|. +.....| ..+...+..+..+|++
T Consensus 83 g~~~----~~~~~~~~~~~~~y~-------~l~~~yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~KgvP 143 (517)
T PF12569_consen 83 GLQL----QLSDEDVEKLLELYD-------ELAEKYPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLRKGVP 143 (517)
T ss_pred hhhc----ccccccHHHHHHHHH-------HHHHhCccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHhcCCc
Confidence 1110 001224566666664 332221000111111110 2222233 4556777788888865
Q ss_pred CCccccc-----------hhHHhhccccc--cCCCchhh-hhcCCCcCHHhhHHHHH-HHHHhhcCHHHHHHHHHHHHhC
Q 004610 317 SNGHMKL-----------NSQLLDGRSNL--ERGPDDQS-RKKDWSIDNQDADEIRL-SEDAKKYAFQRGFEIYEKMCLD 381 (742)
Q Consensus 317 Pd~~ty~-----------~~~li~~~~~~--a~~~~~~m-~~~g~~pd~~tyn~~lI-~~~~k~g~~~~A~~lf~~M~~~ 381 (742)
+--...- ...++.++... ....+..- ....-.|....|...++ ..|-..|+.++|++.+++-.+.
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4222221 11222222110 00011100 01122455555655444 5577899999999999988876
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004610 382 EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (742)
Q Consensus 382 g~~pd-~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (742)
.|+ +-.|..-.+.+-+.|++++|.+.+++-..... -|.+.=+-....+.++|++++|.+++......+..|-...+
T Consensus 224 --tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 224 --TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 354 67788889999999999999999999877643 57777788999999999999999999999877754433221
Q ss_pred --------HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 461 --------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 461 --------~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
...-.+|.+.|++..|++-|+.+.+.
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33346678999999888877766554
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=97.76 E-value=0.0036 Score=72.95 Aligned_cols=213 Identities=10% Similarity=-0.012 Sum_probs=106.8
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004610 165 NDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (742)
Q Consensus 165 ~~~~A~~v~~~m~~~g~~~~~~~~P~-~~tyn~lI~~~~---------~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~ 234 (742)
...+|.+.|++-.+. .|+ ...|..+-.++. ..+++++|...+++..+.. +-+...+..+-.
T Consensus 276 ~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~ 346 (553)
T PRK12370 276 SLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 356788888887432 232 234444333332 3345889999999888643 224556665555
Q ss_pred HHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcC
Q 004610 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (742)
Q Consensus 235 ~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G 314 (742)
.+. ..|+.++|...|+ +..+. +-.+...|..+-.. +...|++++|...+++..+..
T Consensus 347 ~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 347 INT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC
Confidence 555 5677777777774 22222 11122223333333 555666666666666655432
Q ss_pred CCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 004610 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAV 393 (742)
Q Consensus 315 ~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~L 393 (742)
|+...+ +.. +...+...|++++|.+.+++..... .| +...+..+
T Consensus 403 --P~~~~~-------------------------------~~~-~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~l 447 (553)
T PRK12370 403 --PTRAAA-------------------------------GIT-KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQ 447 (553)
T ss_pred --CCChhh-------------------------------HHH-HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHH
Confidence 221110 001 2222334556666666666654432 23 23334555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNNGDVDKACSVEEHML 449 (742)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-y~~lI~~~~~~g~~~~A~~l~~~M~ 449 (742)
-..+...|+.++|...+.++... .|+..+ .+.+-..|+..| ++|...++.+.
T Consensus 448 a~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 448 VMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 55556666666666666654332 233222 222333344444 35555555544
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.006 Score=69.02 Aligned_cols=277 Identities=16% Similarity=0.090 Sum_probs=182.9
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcccc
Q 004610 165 NDSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLGQYHYNVLLYLCSSAAV 241 (742)
Q Consensus 165 ~~~~A~~v~~~m~~~g~~~~~~~~P~~-~tyn~lI~~~~~~g~~~~A~~lf~~M~~~G--i~pd~~tyn~LL~~~~~~~~ 241 (742)
+..+|...|..+ |.. .+|+ ++..-+=.+|...++.++|.++|+...+.. ..-+...|++.|-=+-+.
T Consensus 334 ~~~~A~~~~~kl------p~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-- 403 (638)
T KOG1126|consen 334 NCREALNLFEKL------PSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-- 403 (638)
T ss_pred HHHHHHHHHHhh------HHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--
Confidence 345677777765 221 2222 444445578889999999999999998532 223778999988765511
Q ss_pred CCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCC-Ccc
Q 004610 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGH 320 (742)
Q Consensus 242 ~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~P-d~~ 320 (742)
-++.++. +++.+. +-..-.||.++=++ |.-.++.+.|.+.|+.-.+. .| .++
T Consensus 404 ------------v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faY 456 (638)
T KOG1126|consen 404 ------------VALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAY 456 (638)
T ss_pred ------------HHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccch
Confidence 1222332 333332 22245679999999 99999999999999866543 34 445
Q ss_pred ccchhHHhhccccccCCCchh-hh--hcCCCcCHHhhHHH--HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004610 321 MKLNSQLLDGRSNLERGPDDQ-SR--KKDWSIDNQDADEI--RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (742)
Q Consensus 321 ty~~~~li~~~~~~a~~~~~~-m~--~~g~~pd~~tyn~~--lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~ 395 (742)
+|+ +-|+...+..-|+. |. .+.+..|...||.. |=-.|.|.++++.|.--|++..+-+ +-|.+....+..
T Consensus 457 ayT----LlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~ 531 (638)
T KOG1126|consen 457 AYT----LLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGR 531 (638)
T ss_pred hhh----hcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhH
Confidence 554 33333111111111 11 23455677777762 3356778999999998888877654 346777788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHH
Q 004610 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGD 474 (742)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~ 474 (742)
.+-+.|+.|+|++++++-....-+--..-|. ....+...++.++|+..++++++. .|+. ..|-.|-..|.+-|+.+
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccch
Confidence 8889999999999999876553322233333 344456678999999999999864 5665 45667778888999999
Q ss_pred HHHHHHHHHHHc
Q 004610 475 RVYYLLHKLRTS 486 (742)
Q Consensus 475 ~A~~ll~~M~~~ 486 (742)
.|+.=|.-+.+.
T Consensus 609 ~Al~~f~~A~~l 620 (638)
T KOG1126|consen 609 LALLHFSWALDL 620 (638)
T ss_pred HHHHhhHHHhcC
Confidence 998888777654
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=97.74 E-value=0.0028 Score=73.93 Aligned_cols=89 Identities=7% Similarity=-0.096 Sum_probs=41.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~ 435 (742)
+-..|...|++++|.+.+++..+.. |+ ...+..++..+...|+.++|...+++..+.. .|+ ...+..+-.++...
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~ 454 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLK 454 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhC
Confidence 3344555566666666666555432 22 1122223333444555666666655544331 132 22233344444555
Q ss_pred CCHHHHHHHHHHHH
Q 004610 436 GDVDKACSVEEHML 449 (742)
Q Consensus 436 g~~~~A~~l~~~M~ 449 (742)
|+.++|.+.++++.
T Consensus 455 G~~~eA~~~~~~~~ 468 (553)
T PRK12370 455 GKHELARKLTKEIS 468 (553)
T ss_pred CCHHHHHHHHHHhh
Confidence 66666666655543
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.72 E-value=0.0073 Score=68.42 Aligned_cols=241 Identities=12% Similarity=0.023 Sum_probs=157.5
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCC-CCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCH----HHH
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKK-DRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQR---EGIKLGQ----YHY 229 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~-~~P~~~ty-n~lI~~~~~~g~~~~A~~lf~~M~~---~Gi~pd~----~ty 229 (742)
.....++.+.|..+++.-.+. .++..| ..|.+.+. +.+=..|...+++++|..+|.++.. ..+-++. .++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 566778999999999986543 111122 23443332 3355678888999999999999872 2222222 344
Q ss_pred HHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHH
Q 004610 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (742)
Q Consensus 230 n~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~ 309 (742)
+.|=.+|+ +.|++++|...++ .|.+++.+
T Consensus 287 ~nLa~ly~----------~~GKf~EA~~~~e-----------------------------------------~Al~I~~~ 315 (508)
T KOG1840|consen 287 NNLAVLYY----------KQGKFAEAEEYCE-----------------------------------------RALEIYEK 315 (508)
T ss_pred HHHHHHHh----------ccCChHHHHHHHH-----------------------------------------HHHHHHHH
Confidence 44444566 7777777777663 44455544
Q ss_pred HHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHh---CCCCCC
Q 004610 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMN 386 (742)
Q Consensus 310 M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~---~g~~pd 386 (742)
..|.. .|.+.+.-+-+...|+..+++++|..++....+ .-..++
T Consensus 316 --~~~~~-------------------------------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 316 --LLGAS-------------------------------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred --hhccC-------------------------------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 11111 112222222277778888899999888875432 112222
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C--CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHH----HC
Q 004610 387 ----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----G--INPR-LRSYGPALSVFCNNGDVDKACSVEEHML----EH 451 (742)
Q Consensus 387 ----~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~----g--~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~----~~ 451 (742)
.-+|+.|-..|-+.|++++|.+++++.... + ..+. -..++-|=..|.+.+..++|.++|.+-. ..
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 267999999999999999999999987543 1 1222 3455556677888899999999997743 33
Q ss_pred CCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 452 GVY-PE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 452 gv~-pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
|.. |+ ..+|.-|...|.+.|++++|.++.+...
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 322 33 4678999999999999999999988775
No 51
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=4.4e-05 Score=51.55 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 424 SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
|||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44444444444444444444444444443
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.65 E-value=0.011 Score=63.20 Aligned_cols=282 Identities=12% Similarity=-0.005 Sum_probs=187.0
Q ss_pred hcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccC
Q 004610 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (742)
Q Consensus 163 ~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~ 242 (742)
.|++..|+++..+-.+ .+..|- ..|-.-..+.-+.||.+.|-....+..+.--.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae------~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAE------HGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhh------cCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 4889999999888633 233344 7788888899999999999999999987644566777777777777
Q ss_pred CcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCcccc
Q 004610 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (742)
Q Consensus 243 ~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty 322 (742)
..|+.+.|..-.+.. .+|.. .+...-.....+ |.+.|++.+...++.+|.+.|+--|.-.-
T Consensus 165 -----~~~d~~aA~~~v~~l----l~~~p----r~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVDQL----LEMTP----RHPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHHHH----HHhCc----CChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 667777776666411 12221 144445666677 99999999999999999999876555332
Q ss_pred c------hhHHhhccc-cccCC---Cchhhhhc-CCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004610 323 L------NSQLLDGRS-NLERG---PDDQSRKK-DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (742)
Q Consensus 323 ~------~~~li~~~~-~~a~~---~~~~m~~~-g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn 391 (742)
- .+.|-++-. ..+.. .+.....+ .-.|..++ + ++.-+.+.|+-++|.++..+-.+.+..|...
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~--~-~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~--- 299 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVV--A-YAERLIRLGDHDEAQEIIEDALKRQWDPRLC--- 299 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHH--H-HHHHHHHcCChHHHHHHHHHHHHhccChhHH---
Confidence 1 011111111 11111 11111111 11233221 2 6677888999999999998888887766621
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004610 392 AVGRMAMSMGDGDMAFDMVKRM-KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M-~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (742)
..-.+.+-++.+.-.+..+.- +..+..| -.+.+|=.-|.+.+.+.+|.+.|+.-.+ ..|+..+|+-+-+++.+.
T Consensus 300 -~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 300 -RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred -HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 122344566666555555543 3445666 4455566667888999999999995554 469999999999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 004610 471 GKGDRVYYLLHKLRTS 486 (742)
Q Consensus 471 g~~~~A~~ll~~M~~~ 486 (742)
|+..+|.++.++-...
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999888776543
No 53
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.52 E-value=0.0012 Score=58.49 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004610 392 AVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELEA 462 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~~~g--------~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (742)
..|.-|...++.....-+|..++..|+ .|.+.+|+.++.+.++.. .+-+.+.+|++|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 334444445555555566666666665 566666666666555532 23345566777777777777777777
Q ss_pred HHHHHHH
Q 004610 463 LLRVSVE 469 (742)
Q Consensus 463 Li~~~~~ 469 (742)
+|..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.50 E-value=0.013 Score=65.75 Aligned_cols=230 Identities=10% Similarity=-0.036 Sum_probs=147.3
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
....++.+.|...++.+.+.. |+ +...+..+...+.+.|++++|.+++..+.+.++.+.......-+.++...
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~--P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA--PR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 345788999999999995542 21 33678899999999999999999999999987643332212222222100
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
-. +.......+....... ...+ ... +.-.+-.+... +...|+.++|.+++++..+.. ||
T Consensus 236 l~---~~~~~~~~~~L~~~~~-------~~p~--~~~~~~~l~~~~a~~------l~~~g~~~~A~~~l~~~l~~~--pd 295 (409)
T TIGR00540 236 LD---EAMADEGIDGLLNWWK-------NQPR--HRRHNIALKIALAEH------LIDCDDHDSAQEIIFDGLKKL--GD 295 (409)
T ss_pred HH---HHHHhcCHHHHHHHHH-------HCCH--HHhCCHHHHHHHHHH------HHHCCChHHHHHHHHHHHhhC--CC
Confidence 00 0001111122222221 1110 000 22234445555 889999999999999887752 33
Q ss_pred ccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH---HHHHHHHH
Q 004610 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGR 395 (742)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~Li~ 395 (742)
..... +-.+..-.....++.+.+.+.++...+. .|+. ....++-.
T Consensus 296 ~~~~~------------------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~ 343 (409)
T TIGR00540 296 DRAIS------------------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQ 343 (409)
T ss_pred cccch------------------------------hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHH
Confidence 32210 0010112233456778888888776654 3433 45568888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
.+.+.|++++|.+.|+........|+...+..+-..+.+.|+.++|.++|++-
T Consensus 344 l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 344 LLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999996445455799999999999999999999999999874
No 55
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.45 E-value=0.0011 Score=73.44 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=94.7
Q ss_pred HhhHHHHHHHHHhhcCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004610 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (742)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (742)
+.... +++.+....+++.+..++.+.+.. ....-..|..++|+.|.+.|..++|+.+++.=...|+-||..|||.||
T Consensus 67 ~dld~-fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 67 LDLDI-FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHH-HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 33334 677777777888888888888765 222233455699999999999999999998888889999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004610 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (742)
+.+.+.|++..|.++..+|...+...+..|+.--+.+|.+.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888888888887777776665
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.026 Score=60.91 Aligned_cols=125 Identities=11% Similarity=0.097 Sum_probs=99.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+-+.|--..+...|++++-+... -++-|....+-|-+.|-+.|+-..|++.+-+--.. +..|+.|..-|-..|....-
T Consensus 564 ianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 44566667778888888755433 24457788999999999999999999987664333 66678888878888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHc
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~~~A~~ll~~M~~~ 486 (742)
+++|...|+... =+.|+..-|..||..| .+.|++.+|+++++.+..+
T Consensus 642 ~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 642 SEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999999998754 3689999999999776 5689999999999999876
No 57
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.33 E-value=0.002 Score=57.13 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=67.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHCCCCCChhhHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGD--------GDMAFDMVKRMKSLGINPRLRSYGPA 428 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~-~pd~~tyn~Li~~~~~~g~--------~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (742)
.|..+...+++.....+|+.+++.|+ .|++.+||.++++.++..- +-+.+.++..|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 56666677999999999999999999 8999999999999987442 33678899999999999999999999
Q ss_pred HHHHHHc
Q 004610 429 LSVFCNN 435 (742)
Q Consensus 429 I~~~~~~ 435 (742)
|..+.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 9988653
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.033 Score=58.23 Aligned_cols=136 Identities=16% Similarity=0.125 Sum_probs=90.4
Q ss_pred cccchhhhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHc-
Q 004610 143 IGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLR-VELDMCSKRGDVMGAIRLYDKAQRE- 220 (742)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn-~lI~~~~~~g~~~~A~~lf~~M~~~- 220 (742)
+....++.+|..+. ...++|.++|-+|.+ ..|.++--+ +|=+.|-+.|.++.|+.+...+.++
T Consensus 35 lsr~Yv~GlNfLLs-------~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp 99 (389)
T COG2956 35 LSRDYVKGLNFLLS-------NQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP 99 (389)
T ss_pred ccHHHHhHHHHHhh-------cCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC
Confidence 44445566666666 577899999999955 233334444 4556678889999999999988754
Q ss_pred CCCCCHHHHH--HHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccC
Q 004610 221 GIKLGQYHYN--VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSY 298 (742)
Q Consensus 221 Gi~pd~~tyn--~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g 298 (742)
++.-+..... -|=.=|- .+|-+++|.++|. .+++...+. .-.---|+.- |-+..
T Consensus 100 dlT~~qr~lAl~qL~~Dym----------~aGl~DRAE~~f~-------~L~de~efa-~~AlqqLl~I------YQ~tr 155 (389)
T COG2956 100 DLTFEQRLLALQQLGRDYM----------AAGLLDRAEDIFN-------QLVDEGEFA-EGALQQLLNI------YQATR 155 (389)
T ss_pred CCchHHHHHHHHHHHHHHH----------HhhhhhHHHHHHH-------HHhcchhhh-HHHHHHHHHH------HHHhh
Confidence 4444333222 2222344 7899999999995 445432222 1123345555 88899
Q ss_pred ChHHHHHHHHHHHHcCCCC
Q 004610 299 RFDDLDSTFNEKENLGQFS 317 (742)
Q Consensus 299 ~~~~A~~lf~~M~~~G~~P 317 (742)
++++|.++-+++...|-.+
T Consensus 156 eW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred HHHHHHHHHHHHHHcCCcc
Confidence 9999999999999986444
No 59
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.26 Score=54.00 Aligned_cols=238 Identities=13% Similarity=0.067 Sum_probs=170.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC--
Q 004610 201 CSKRGDVMGAIRLYDKAQREGI-K-LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-- 276 (742)
Q Consensus 201 ~~~~g~~~~A~~lf~~M~~~Gi-~-pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-- 276 (742)
.-...|+++|+.+|++..+..- + -|..+|+.+|..--. ++.-.--|..++. +.
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~---------~skLs~LA~~v~~--------------idKy 328 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND---------KSKLSYLAQNVSN--------------IDKY 328 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---------hHHHHHHHHHHHH--------------hccC
Confidence 3455799999999999997631 1 378899999977662 1222234555552 21
Q ss_pred cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHH
Q 004610 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (742)
Q Consensus 277 ~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (742)
..-|+.++-+. |.-.++.+.|...|+.-.+.. |....-.+
T Consensus 329 R~ETCCiIaNY------YSlr~eHEKAv~YFkRALkLN----------------------------------p~~~~aWT 368 (559)
T KOG1155|consen 329 RPETCCIIANY------YSLRSEHEKAVMYFKRALKLN----------------------------------PKYLSAWT 368 (559)
T ss_pred CccceeeehhH------HHHHHhHHHHHHHHHHHHhcC----------------------------------cchhHHHH
Confidence 33355555555 788888999999998776642 11111123
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004610 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (742)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (742)
.|=..|....+...|.+-++...+-. +.|--.|=.|=.+|.-.+.+.-|+-.|++-.+- ..-|.+.|.+|=.+|.+.+
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLN 446 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhc
Confidence 24477777788888888888877643 568888999999999999999999999876543 2346899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---cCCCChhHHHH---HHHHhhc
Q 004610 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS---VRKVSPSTADV---IAKWFNS 504 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~---~~~~~p~t~~~---I~~~~~~ 504 (742)
++++|...|.+....|-. +...|..|-+.|-+-++.++|...|.+-.+. ....+|.|..+ +..+|..
T Consensus 447 ~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 999999999999887733 6688999999999999999999988776653 11245555433 5555543
No 60
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.022 Score=63.89 Aligned_cols=281 Identities=11% Similarity=-0.001 Sum_probs=166.6
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSS 238 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~ 238 (742)
+...|+..+|..-+-+-.+.. |. =.+.|+-|=..+-..|+.-.|+.-|++...- .|+ ...|-.|=..|.
T Consensus 194 lka~Grl~ea~~cYlkAi~~q--p~-----fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k- 263 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ--PC-----FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK- 263 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC--Cc-----eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH-
Confidence 346788888888877754321 11 1256777777788888888888888887642 232 223444444444
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
..+.+++|...+. +.+..+ -...+.|..|--. |-..|.+|.|..-+++-.+. .|+
T Consensus 264 ---------e~~~~d~Avs~Y~------rAl~lr--pn~A~a~gNla~i------YyeqG~ldlAI~~Ykral~~--~P~ 318 (966)
T KOG4626|consen 264 ---------EARIFDRAVSCYL------RALNLR--PNHAVAHGNLACI------YYEQGLLDLAIDTYKRALEL--QPN 318 (966)
T ss_pred ---------HHhcchHHHHHHH------HHHhcC--CcchhhccceEEE------EeccccHHHHHHHHHHHHhc--CCC
Confidence 3444444444442 100000 0011222222222 44444444444444443332 222
Q ss_pred c-cccchhHHhhcccc-----ccCCCchhhhhcCCCc-CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCC-HHHH
Q 004610 319 G-HMKLNSQLLDGRSN-----LERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASL 390 (742)
Q Consensus 319 ~-~ty~~~~li~~~~~-----~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~ty 390 (742)
- ..|+ -|-+++.+ +|...+..... +.| -..+.|+ |-+.|...|.+++|..+|..-.+- -|. ...+
T Consensus 319 F~~Ay~--NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N-Lgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~ 391 (966)
T KOG4626|consen 319 FPDAYN--NLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN-LGNIYREQGKIEEATRLYLKALEV--FPEFAAAH 391 (966)
T ss_pred chHHHh--HHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH-HHHHHHHhccchHHHHHHHHHHhh--Chhhhhhh
Confidence 1 2233 22222221 11111111111 011 1123445 778899999999999999887653 343 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 004610 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSV 468 (742)
Q Consensus 391 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~ 468 (742)
|.|...|-..|++++|...+++.. .++|+. ..|+-+=..|-..|+++.|.+.+.+.+.- .|. ....+-|-..|-
T Consensus 392 nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYK 467 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhh
Confidence 999999999999999999998854 467764 56777777788889999999999887753 454 345677888899
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 004610 469 EAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (742)
.+|++.+|..-+++-..-
T Consensus 468 DsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKL 485 (966)
T ss_pred ccCCcHHHHHHHHHHHcc
Confidence 999999999988876543
No 61
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.08 E-value=0.0035 Score=62.25 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc----------------CCHHHHHH
Q 004610 385 MNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN----------------GDVDKACS 443 (742)
Q Consensus 385 pd~~tyn~Li~~~~~-----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~----------------g~~~~A~~ 443 (742)
.|..+|..+|+.|.+ .|.++=....++.|.+.|+.-|+.+|+.||+.+=+. .+.+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 456666666666664 355666666667777777777777777777766542 13467899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 004610 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKL 483 (742)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~-~A~~ll~~M 483 (742)
++++|+..|+.||..|+..|++.+.+.+..- +..+++--|
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 9999999999999999999999998887643 333443333
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.05 E-value=0.097 Score=59.98 Aligned_cols=268 Identities=13% Similarity=0.066 Sum_probs=174.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCc
Q 004610 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYN-VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN 277 (742)
Q Consensus 199 ~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn-~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~ 277 (742)
..+...|++++|++.+..-. ...+|..++- ..-..+. +.|+.++|..++. ++.+. +..|
T Consensus 12 ~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~----------kLg~~~eA~~~y~-------~Li~r-NPdn 71 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLL----------KLGRKEEAEKIYR-------ELIDR-NPDN 71 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHH-CCCc
Confidence 34678899999999997643 3345655554 4455566 8899999999994 66654 3334
Q ss_pred cccccccccccccccccc-----ccCChHHHHHHHHHHHHcCCCCCccccchhHHh-h-----ccccccCCCchhhhhcC
Q 004610 278 NGQLDYGSSPMIDKLESN-----SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLL-D-----GRSNLERGPDDQSRKKD 346 (742)
Q Consensus 278 ~vtyn~lI~~~~~~~~~~-----~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li-~-----~~~~~a~~~~~~m~~~g 346 (742)
.--|..+..+ .. .....+....+++++...- |-....- .+. + .+...+...+..+..+|
T Consensus 72 ~~Yy~~L~~~------~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~--rl~L~~~~g~~F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 72 YDYYRGLEEA------LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPR--RLPLDFLEGDEFKERLDEYLRPQLRKG 141 (517)
T ss_pred HHHHHHHHHH------HhhhcccccccHHHHHHHHHHHHHhC--ccccchh--HhhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 4446666666 31 2235677788888886653 3222221 111 1 11123334555566777
Q ss_pred CCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHH
Q 004610 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E----------VPMNEA--SLTAVGRMAMSMGDGDMAFDMV 410 (742)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g----------~~pd~~--tyn~Li~~~~~~g~~~~A~~l~ 410 (742)
+++ ++++ |-..|......+-..+++...... | -.|... ++.-|..-|-..|+.++|++++
T Consensus 142 vPs---lF~~-lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~I 217 (517)
T PF12569_consen 142 VPS---LFSN-LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYI 217 (517)
T ss_pred Cch---HHHH-HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 543 3445 666676666666666666665432 1 124443 4455667777899999999999
Q ss_pred HHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 004610 411 KRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (742)
Q Consensus 411 ~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~ 489 (742)
++-.+. .|+ +..|..--..|-+.|++++|.+.+++..... .-|...-+-....+.++|++++|.+++........+
T Consensus 218 d~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 218 DKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 987765 465 4566666677888999999999999988765 347777788888899999999999999999777333
Q ss_pred CChhHHHHHHHHhh
Q 004610 490 VSPSTADVIAKWFN 503 (742)
Q Consensus 490 ~~p~t~~~I~~~~~ 503 (742)
+..+...+=..||.
T Consensus 295 ~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 295 PLSNLNDMQCMWFE 308 (517)
T ss_pred cccCHHHHHHHHHH
Confidence 33334444344443
No 63
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.04 E-value=0.0085 Score=66.42 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=106.7
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 374 lf~~M~~---~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
++..|.. .+.+.+.+....+++.+....+++++.+++...... ...-...|..++|..|.+.|..++|.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4555543 355678889999999999999999999999988765 33334456679999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHH-HHHHhhc
Q 004610 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (742)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~ 504 (742)
...|+-||..|||.||+.+.+.|++..|.++..+|......-.|.|+.. +..+++-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987744455667655 4444433
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.94 E-value=0.2 Score=53.91 Aligned_cols=143 Identities=15% Similarity=0.036 Sum_probs=96.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~-------~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (742)
....|.+.|++.....++.+|.+.|+--|+ .+|+.+++-....+..+.-...+++...+ .+-+...-.+++.
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~ 271 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAE 271 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHH
Confidence 678888999999999999999888866554 46777777666666666555555554433 3344555566677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH------------------------------HHHHHHHHHHHHcCCHHHHHHHH
Q 004610 431 VFCNNGDVDKACSVEEHMLEHGVYPEE------------------------------PELEALLRVSVEAGKGDRVYYLL 480 (742)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~------------------------------~ty~~Li~~~~~~g~~~~A~~ll 480 (742)
-+.++|+.++|.++.++-.+++..|+. -.+.+|=..|.+.+.+.+|.+.|
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777777777665554433332 34566667778888888888888
Q ss_pred HHHHHccCCCChhHHHHHHHHhh
Q 004610 481 HKLRTSVRKVSPSTADVIAKWFN 503 (742)
Q Consensus 481 ~~M~~~~~~~~p~t~~~I~~~~~ 503 (742)
+.-.+. .++.++|+.+...+.
T Consensus 352 eaAl~~--~~s~~~~~~la~~~~ 372 (400)
T COG3071 352 EAALKL--RPSASDYAELADALD 372 (400)
T ss_pred HHHHhc--CCChhhHHHHHHHHH
Confidence 866555 666667766544443
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.90 E-value=0.17 Score=57.52 Aligned_cols=212 Identities=14% Similarity=0.074 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchh
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~---Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~e 268 (742)
.+..-+-..|...|+++.|..+|.+..+. +.-.+.-...+++..|+ .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a--------------------~~--------- 250 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILA--------------------LV--------- 250 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHH--------------------HH---------
Confidence 45566788888999999999988877643 11112222223333222 11
Q ss_pred hcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCC
Q 004610 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (742)
Q Consensus 269 m~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~ 348 (742)
|...+++++|..+|+++.. .....+... .
T Consensus 251 -------------------------y~~~~k~~eAv~ly~~AL~-------------i~e~~~G~~-------------h 279 (508)
T KOG1840|consen 251 -------------------------YRSLGKYDEAVNLYEEALT-------------IREEVFGED-------------H 279 (508)
T ss_pred -------------------------HHHhccHHHHHHHHHHHHH-------------HHHHhcCCC-------------C
Confidence 6667777888888877754 222222110 1
Q ss_pred c-CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C
Q 004610 349 I-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEVP-MNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSL---G 417 (742)
Q Consensus 349 p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~g~~-pd~-~tyn~Li~~~~~~g~~~~A~~l~~~M~~~---g 417 (742)
| -..++++ |-..|++.|++++|...++...+ .|.. |.+ .-++.+...|+..+++++|..++..-.+. -
T Consensus 280 ~~va~~l~n-La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNN-LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHH-HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 1234555 66789999999888877764321 1222 333 34677888899999999999998764322 1
Q ss_pred CCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 418 INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH------GVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 418 ~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~------gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
..++ .-+|+-|=..|-..|+.++|.++|++.+.. +..+. -..++-|-..|.+.+...+|.++|.+-.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 2233 367888888999999999999999987653 22232 4567788888899999999999987643
No 66
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.87 E-value=0.25 Score=58.14 Aligned_cols=297 Identities=12% Similarity=0.028 Sum_probs=179.1
Q ss_pred HhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 004610 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (742)
Q Consensus 161 ~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (742)
.+.+++..|.-.|.+-++... ++.-.+--=+..|-+.|+...|..-|.+|....-..|-.-+-.+|...++.
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p-------~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~- 289 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANP-------SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY- 289 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCC-------cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH-
Confidence 345556666666666543221 121222223456778889999998888887643222333344444443321
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC--
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-- 318 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd-- 318 (742)
+...+..+.|.+.+. ...-...+....-.+|+++.- +.+...++.|......+..+...+|
T Consensus 290 -----~~~~~~~e~a~~~le------~~~s~~~~~~~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 290 -----FITHNERERAAKALE------GALSKEKDEASLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred -----HHHhhHHHHHHHHHH------HHHhhccccccccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCCChh
Confidence 114455577887774 111111111133347777777 8888999999999888887433333
Q ss_pred --------------------ccccchh--HHhhccc-cc----cCCCchhhhhcCCCc--CHHhhHHHHHHHHHhhcCHH
Q 004610 319 --------------------GHMKLNS--QLLDGRS-NL----ERGPDDQSRKKDWSI--DNQDADEIRLSEDAKKYAFQ 369 (742)
Q Consensus 319 --------------------~~ty~~~--~li~~~~-~~----a~~~~~~m~~~g~~p--d~~tyn~~lI~~~~k~g~~~ 369 (742)
..+|... .+.-++. .. .+-+.+-.....+.| ++--|-. +..+|...|++.
T Consensus 353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-~a~al~~~~~~~ 431 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD-LADALTNIGKYK 431 (895)
T ss_pred hhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH-HHHHHHhcccHH
Confidence 3333211 1111111 11 111333333333222 3334555 678999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 370 ~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
+|+++|..+...-.--+...|--+-++|-..|..++|.+.++..... .|+. -.=-+|=.-+-+.|+.|+|.+.++.|
T Consensus 432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 432 EALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 99999999988766677889999999999999999999999987654 2332 11122334466789999999999886
Q ss_pred H--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 449 L--------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 449 ~--------~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
. ..+..|+....-...+.|...|+.++-......|..
T Consensus 510 ~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 510 INPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred cCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4 234556666666667777888888775555555543
No 67
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.86 E-value=0.0066 Score=60.36 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=74.5
Q ss_pred CHHhhHHHHHHHHHh-----hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHH
Q 004610 350 DNQDADEIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------------GDGDMAFD 408 (742)
Q Consensus 350 d~~tyn~~lI~~~~k-----~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~----------------g~~~~A~~ 408 (742)
|..+|.. +|+.|.+ .|.++=...-+..|.+-|+.-|..+|+.||+.+=+. .+.+-|++
T Consensus 46 ~K~~F~~-~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLE-AVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHH-HHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3334444 5555553 477787888889999999999999999999976542 23457999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHH
Q 004610 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDV-DKACSVEEHM 448 (742)
Q Consensus 409 l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~-~~A~~l~~~M 448 (742)
++++|+..|+.||..|+..||+.|++.+.. .+.++++--|
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 999999999999999999999999887753 3344444333
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.85 E-value=0.23 Score=49.96 Aligned_cols=208 Identities=13% Similarity=0.022 Sum_probs=141.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccC
Q 004610 194 LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (742)
Q Consensus 194 yn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~ 273 (742)
.--|--+|-..|+...|..-+++..+.. +-+..+|.++-..|- +.|..+.|.+.|. .-+.-.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl~p 100 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSLAP 100 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhcCC
Confidence 3344467899999999999999998753 224567888888888 8899999999985 2222221
Q ss_pred CCCcccc-cccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHH
Q 004610 274 DMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (742)
Q Consensus 274 g~~~~vt-yn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~ 352 (742)
+-.|+.. |.+. +|..|++++|...|++-... |+-.+- ..
T Consensus 101 ~~GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~---P~Y~~~----------------------------s~ 140 (250)
T COG3063 101 NNGDVLNNYGAF---------LCAQGRPEEAMQQFERALAD---PAYGEP----------------------------SD 140 (250)
T ss_pred CccchhhhhhHH---------HHhCCChHHHHHHHHHHHhC---CCCCCc----------------------------ch
Confidence 1112222 4333 88899999999999877664 221111 12
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (742)
||.+ +--+..+.|+.+.|.+.|.+-.+.. +-...+.-.+.+...+.|+.-.|..+++.....|. ++..+.-..|.--
T Consensus 141 t~eN-~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iria 217 (250)
T COG3063 141 TLEN-LGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIA 217 (250)
T ss_pred hhhh-hHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHH
Confidence 4445 4444457889999999998876643 12234667788888888888888888888776655 7877777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004610 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (742)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (742)
-+.|+.+.|-+.=..+... -|....|...
T Consensus 218 k~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 218 KRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 7788888777766555543 4555555443
No 69
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.039 Score=59.64 Aligned_cols=285 Identities=11% Similarity=0.084 Sum_probs=173.2
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
+.+.++.+.|.+++.-+..+..+... -..+=-+++..+--..++.+|.+.-+... +..-||.---.--..
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~s----aaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTAS----AAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGN 498 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhH----HHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCc
Confidence 45667888888888877544332222 11111122333333446777777766654 333444333222211
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
.. + -.|++++|.+.+. |...+ +.. ....||+-+.+ -..|++++|++.|-++...-.---
T Consensus 499 ~~----f-~ngd~dka~~~yk-------eal~n-dasc~ealfniglt~-------e~~~~ldeald~f~klh~il~nn~ 558 (840)
T KOG2003|consen 499 IA----F-ANGDLDKAAEFYK-------EALNN-DASCTEALFNIGLTA-------EALGNLDEALDCFLKLHAILLNNA 558 (840)
T ss_pred ee----e-ecCcHHHHHHHHH-------HHHcC-chHHHHHHHHhcccH-------HHhcCHHHHHHHHHHHHHHHHhhH
Confidence 00 0 4588888888885 33332 111 11226665554 456888999888876643211111
Q ss_pred ccccchhHHhhccc---cccCCCchhhhhcCCCcC-HHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004610 319 GHMKLNSQLLDGRS---NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (742)
Q Consensus 319 ~~ty~~~~li~~~~---~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li 394 (742)
.+.| .+-+-|. +.+..+---|....+.|+ ....+. |-+.|-+.|+-..|++.+-+-- +-++-|..|..-|-
T Consensus 559 evl~---qianiye~led~aqaie~~~q~~slip~dp~ilsk-l~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ 633 (840)
T KOG2003|consen 559 EVLV---QIANIYELLEDPAQAIELLMQANSLIPNDPAILSK-LADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLA 633 (840)
T ss_pred HHHH---HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH-HHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHH
Confidence 1222 2222222 222222222344455664 444445 8889999999999988765532 23566888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004610 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN-NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (742)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~-~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (742)
.-|....-++.|...|+.- .=+.|+..-|-.+|..|.+ .|+..+|+++|.....+ +.-|..+..-|++.+...|..
T Consensus 634 ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9999999999999999863 3478999999999887665 79999999999998755 567888888899888777743
Q ss_pred HHHHHHHHHH
Q 004610 474 DRVYYLLHKL 483 (742)
Q Consensus 474 ~~A~~ll~~M 483 (742)
++.++-+++
T Consensus 711 -d~key~~kl 719 (840)
T KOG2003|consen 711 -DAKEYADKL 719 (840)
T ss_pred -hHHHHHHHH
Confidence 344444444
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.72 E-value=0.18 Score=53.85 Aligned_cols=217 Identities=11% Similarity=-0.040 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccccc
Q 004610 205 GDVMGAIRLYDKAQRE-GIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (742)
Q Consensus 205 g~~~~A~~lf~~M~~~-Gi~pd~--~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vty 281 (742)
+..+.++.-+.++... .+.|+. ..|..+=..+. ..|+.++|...|. +.... ...+...|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~ 101 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADAY 101 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHHH
Confidence 4557777888887743 233332 33444444555 7788999998885 33322 22244457
Q ss_pred ccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHH
Q 004610 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (742)
Q Consensus 282 n~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~ 361 (742)
+.+-.. +...|++++|...|+...+. .|+- ..+|.. +-..
T Consensus 102 ~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~-------------------------------~~a~~~-lg~~ 141 (296)
T PRK11189 102 NYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTY-------------------------------NYAYLN-RGIA 141 (296)
T ss_pred HHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHHH
Confidence 766666 88999999999999887764 2332 223334 5566
Q ss_pred HHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 004610 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (742)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A 441 (742)
+...|++++|.+.|+...... |+..........+...++.++|...|.+.... ..|+...+ .+. ....|+..++
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCHH
Confidence 778899999999999887653 54332222233344677899999999775433 33443222 222 2335665554
Q ss_pred HHHHHHHHHC---CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 442 CSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 442 ~~l~~~M~~~---gv--~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+.++.+.+. .+ .| ....|..|-..+.+.|+.++|...|++-.+.
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 355555432 11 11 2357888888999999999999999998776
No 71
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.72 E-value=0.32 Score=53.81 Aligned_cols=143 Identities=12% Similarity=0.025 Sum_probs=115.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHH
Q 004610 296 SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY 375 (742)
Q Consensus 296 ~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf 375 (742)
..|..++|+..++++... .||.+.|.....+-+.+.++.++|.+.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~----------------------------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA----------------------------------QPDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred HhcccchHHHHHHHHHHh----------------------------------CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456778888888876554 3555555676889999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004610 376 EKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (742)
Q Consensus 376 ~~M~~~g~~pd-~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (742)
+.+... .|+ ....-.+-.++.+.|++.+|..+++.-... .+-|...|..|=.+|...|+..+|..-..++
T Consensus 364 ~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------ 434 (484)
T COG4783 364 KKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------ 434 (484)
T ss_pred HHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------
Confidence 999875 466 566667888999999999999999997655 5678899999999999999999988877654
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
|...|+++.|...+..-++....-.|+
T Consensus 435 ------------~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 435 ------------YALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred ------------HHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 577899999999998887774444444
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.69 E-value=0.013 Score=62.36 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=86.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (742)
.|..|.+.++++.|.+.++.|.+.. .| .+.+-|..++.. ...+.+|+-+|+++... ..++..+.|.+..++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 6778888899999999999988753 34 445556665553 23588899999997654 6678888888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~ll~~M~~~ 486 (742)
..|++++|.+++++..... .-|..|..-+|-.....|+. +.+.+++.+++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8899999999888876543 22455666667776777777 6777888888765
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.61 E-value=0.55 Score=51.03 Aligned_cols=230 Identities=10% Similarity=-0.042 Sum_probs=129.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcc
Q 004610 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (742)
Q Consensus 199 ~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~ 278 (742)
..+...|++++|.+++++..+.. +-|...++. ...+.... ...|....+.+.+. . .. ...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~--~~-~~~~~ 112 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L--WA-PENPD 112 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c--cC-cCCCC
Confidence 34567789999999999887642 233444442 11111000 03455555666553 1 00 11122
Q ss_pred ccc--ccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHH
Q 004610 279 GQL--DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (742)
Q Consensus 279 vty--n~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (742)
..| ..+-.. +...|++++|...+++..+.. |+..... .
T Consensus 113 ~~~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~--------------------------------~ 152 (355)
T cd05804 113 YWYLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV--------------------------------H 152 (355)
T ss_pred cHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH--------------------------------H
Confidence 222 222233 678899999999999888753 4442221 1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhH-H--HHH
Q 004610 357 IRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PAL 429 (742)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g~-~pd~--~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty-~--~lI 429 (742)
.+-..|...|++++|.+.+++.....- .|+. ..|..+...+...|+.++|..++++...... .+..... + .++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 255677788999999999988766421 2333 3466788888899999999999988753321 2222211 2 233
Q ss_pred HHHHHcCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 430 SVFCNNGDVDKACSV--EEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l--~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.-+-..|..+.+.+. ......... ............++...|+.++|..++..+...
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 334444544333332 221111111 111122235666677888999999999888775
No 74
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.59 E-value=0.06 Score=59.46 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=96.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
|+..+...++++.|.++|+++.+.. |+.. ..|++.+...++-.+|.+++++..+. ..-+......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 5566667789999999999999875 6643 45888888889999999999988754 22244444444556788999
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
.+.|.++.+++... .|+. .+|..|..+|.+.|+++.|+..++.+.-
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999865 5665 5999999999999999999999988843
No 75
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.46 E-value=0.061 Score=56.96 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (742)
+|-. ++...-+.+.++.|..+|.+.++.+ +...+....++|.-+ ..++.+.|.++|+...+. +.-+...|..-|+.
T Consensus 3 v~i~-~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQ-YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 5556 7788888899999999999998653 345555555555433 356777799999998876 55677788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 432 FCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~----~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+.+.|+.+.|+.+|++.... .|.. ..|...|+.=.+.|+.+.+.++..++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999866 3443 48999999999999999999999999886
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.45 E-value=0.4 Score=50.43 Aligned_cols=245 Identities=11% Similarity=0.004 Sum_probs=159.7
Q ss_pred cCCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHH
Q 004610 179 KGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLD 257 (742)
Q Consensus 179 ~g~~~~~~~~P~~~ty-n~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~ 257 (742)
.+.....+..-| .=| +-+=.+|-+-|.+.+|...|..-... .|-+.||-.|-++|. +....+.|+.
T Consensus 211 a~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~----------ridQP~~AL~ 277 (478)
T KOG1129|consen 211 AKPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ----------RIDQPERALL 277 (478)
T ss_pred ccccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH----------HhccHHHHHH
Confidence 333334444445 333 44567889999999999999887765 456678888889999 7778889999
Q ss_pred HhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCC
Q 004610 258 TFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG 337 (742)
Q Consensus 258 ~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~ 337 (742)
+|. +-.+ .++-.|||-.-+.-. +-..++.++|.+++++..+..- -++-..
T Consensus 278 ~~~-------~gld--~fP~~VT~l~g~ARi-----~eam~~~~~a~~lYk~vlk~~~-~nvEai--------------- 327 (478)
T KOG1129|consen 278 VIG-------EGLD--SFPFDVTYLLGQARI-----HEAMEQQEDALQLYKLVLKLHP-INVEAI--------------- 327 (478)
T ss_pred HHh-------hhhh--cCCchhhhhhhhHHH-----HHHHHhHHHHHHHHHHHHhcCC-ccceee---------------
Confidence 985 2111 122445553222110 3334566777777766554310 011111
Q ss_pred CchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (742)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g 417 (742)
.. +-.+|.-.++.+-|++.+..+..-|+. +...|+.+--+|.-.+++|.++--|.+-...-
T Consensus 328 -----------------Ac-ia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 328 -----------------AC-IAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred -----------------ee-eeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 01 345666778899999999999998865 44567777777778889999988888766553
Q ss_pred CCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 418 INPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 418 ~~Pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
-.|+. -.|-.+=......|++..|.+.|+-...+. .-+...||-|--.-.+.|++++|..+++.-...
T Consensus 389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 33442 223334444556789999999988777554 234566777666668999999999998876543
No 77
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.098 Score=59.55 Aligned_cols=247 Identities=11% Similarity=-0.009 Sum_probs=152.4
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV-MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~-~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (742)
+..+..+|.++|+...+. ..-..-++..|.+.+--+-+.=.+ ..|.++.+.+ +-.+.||-++=+.|+
T Consensus 365 El~~Y~~a~~~F~~~r~~----~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-----~~sPesWca~GNcfS--- 432 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRI----EPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-----PNSPESWCALGNCFS--- 432 (638)
T ss_pred HHHHHHHHHHHHHHHHhh----ccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-----CCCcHHHHHhcchhh---
Confidence 345678999999998442 222234557888877554332111 2233333333 235678888888888
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ 320 (742)
-.++.+.|++.|. .-... +....++|+.+=+- +.....+|.|..-|+. .+..|..
T Consensus 433 -------LQkdh~~Aik~f~-------RAiQl-dp~faYayTLlGhE------~~~~ee~d~a~~~fr~----Al~~~~r 487 (638)
T KOG1126|consen 433 -------LQKDHDTAIKCFK-------RAIQL-DPRFAYAYTLLGHE------SIATEEFDKAMKSFRK----ALGVDPR 487 (638)
T ss_pred -------hhhHHHHHHHHHH-------Hhhcc-CCccchhhhhcCCh------hhhhHHHHhHHHHHHh----hhcCCch
Confidence 7778888888885 21111 11133344433333 7778888888888864 4556788
Q ss_pred ccchhHHhhccc---------cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004610 321 MKLNSQLLDGRS---------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (742)
Q Consensus 321 ty~~~~li~~~~---------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn 391 (742)
.|+ ..-|+. +.|+.-|... ..+.|...+.=..+-..+-+.|+.|+|+++|++...-. +-|..+--
T Consensus 488 hYn---AwYGlG~vy~Kqek~e~Ae~~fqkA--~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 488 HYN---AWYGLGTVYLKQEKLEFAEFHFQKA--VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred hhH---HHHhhhhheeccchhhHHHHHHHhh--hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 885 223332 1222222222 23445432222224566778899999999999987654 22444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
-.+..+...++.++|+..++++++. +.-+...|-.+-..|-+.|+.+.|..-|--|.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4566777889999999999999875 43345667777778888999999998887776543
No 78
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.30 E-value=0.27 Score=50.21 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=109.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
+-+.|++++|...|++..... |+.... ...+.. +-..|.+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~----------------------------~~a~~~-la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSPYA----------------------------EQAQLD-LAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchhH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 668899999999999876642 322110 012223 5577888999999999
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCChh-hHH----------------
Q 004610 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLR-SYG---------------- 426 (742)
Q Consensus 374 lf~~M~~~g~~pd~~--tyn~Li~~~~~~--------g~~~~A~~l~~~M~~~g~~Pd~~-ty~---------------- 426 (742)
.++++.+..-..... ++..+-..+... |+.++|.+.|+.+... .|+.. .+.
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998653211122 333333344433 6788999999998765 24321 111
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 427 -PALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 427 -~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+-..+.+.|+.++|...+++..+.. -......+..+..++.+.|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23345778899999999999988652 1223568889999999999999999999998765
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.23 E-value=0.062 Score=57.14 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=88.7
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----c
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~ 435 (742)
..+...|++++|+++++.- -+.......+..|.+.++++.|.+.++.|.+. ..|..... +..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~q-La~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQ-LAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH-HHHHHHHHHhCc
Confidence 4567789999999888642 35667778899999999999999999999865 34544333 4444443 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+.+.+|+.+|+++.+. ..++..+.|.+..+....|++++|.+++.+-...
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3699999999998765 5688999999999999999999999999886544
No 80
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.19 E-value=0.093 Score=43.24 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=37.4
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (742)
..+...|++++|..+|++..... +.+...+..+...+...|++++|.+.|+...... ..+..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 34444555555555555444331 1122344444444444455555555554443321 112233333444444444444
Q ss_pred HHHHHHHHH
Q 004610 440 KACSVEEHM 448 (742)
Q Consensus 440 ~A~~l~~~M 448 (742)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444443
No 81
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.15 E-value=1.2 Score=53.25 Aligned_cols=311 Identities=13% Similarity=0.060 Sum_probs=190.1
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH-------H
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY-------H 228 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~---Gi~pd~~-------t 228 (742)
.+-..++...++.+|.....-=. ...+. +.....|.+-......|++..|...|+..... -..+|.. -
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~-~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILE-SKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHH-HcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 45555666666666654321000 11112 33378899999999999999999999998744 2344442 3
Q ss_pred HHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccc-cccccCChHHHHHHH
Q 004610 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKL-ESNSSYRFDDLDSTF 307 (742)
Q Consensus 229 yn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~-~~~~~g~~~~A~~lf 307 (742)
||. ..|.. .-++.+.|.++|. +.... |-.-|++..... -.-..+...+|...+
T Consensus 500 YNl--arl~E---------~l~~~~~A~e~Yk-------~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 500 YNL--ARLLE---------ELHDTEVAEEMYK-------SILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHH--HHHHH---------hhhhhhHHHHHHH-------HHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 332 22221 3457788888885 22221 222233300000 011235667777777
Q ss_pred HHHHHc-CCCCCccccchhHHhhcc--ccccCCCchhhhhcC-CCcCHHhhHHH-----HHHHHH--------hhcCHHH
Q 004610 308 NEKENL-GQFSNGHMKLNSQLLDGR--SNLERGPDDQSRKKD-WSIDNQDADEI-----RLSEDA--------KKYAFQR 370 (742)
Q Consensus 308 ~~M~~~-G~~Pd~~ty~~~~li~~~--~~~a~~~~~~m~~~g-~~pd~~tyn~~-----lI~~~~--------k~g~~~~ 370 (742)
.+.... .--|++.++- |-+--+. ...|..-|.....+- ..+|. |..+ .|..+- ..+..++
T Consensus 554 k~~l~~d~~np~arsl~-G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~--YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLL-GNLHLKKSEWKPAKKKFETILKKTSTKTDA--YSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHhcccCCcHHHHHH-HHHHHhhhhhcccccHHHHHHhhhccCCch--hHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 765543 4667777763 1111111 133444333333321 11343 3321 222211 3346788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (742)
Q Consensus 371 A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (742)
|+++|.+..... +-|...=|.+--.++..|++.+|.++|....+... -+.-+|--+-++|...|++..|.++|+.-.+
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887654 55778888888899999999999999999988754 2344566788999999999999999998665
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHHHHHHhhc
Q 004610 451 H-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNS 504 (742)
Q Consensus 451 ~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~~ 504 (742)
. +-.-+......|-+++-+.|.+.+|.+.+-.-... .|+.. -+++....++.
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHH
Confidence 5 44557778889999999999999999988776655 44444 34554444443
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.13 E-value=0.32 Score=48.67 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=96.1
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-HHcCC--HHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF-CNNGD--VDKA 441 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~-~~~g~--~~~A 441 (742)
.++.+++...++...... +.|...|..|-..|...|+.++|...|++..+.. .-+...+..+-.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445566776676655543 5688899999999999999999999999877653 22455666555553 56677 5999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-hhHHHHH
Q 004610 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADVI 498 (742)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~-p~t~~~I 498 (742)
.+++++..+.. .-+...+..|-..+.+.|++++|...|+++.+. .+. .+-+.+|
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i 184 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHH
Confidence 99999998775 225677788888889999999999999999876 333 2245555
No 83
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=1.8 Score=47.81 Aligned_cols=282 Identities=10% Similarity=0.054 Sum_probs=177.8
Q ss_pred HhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 004610 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (742)
Q Consensus 161 ~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (742)
+..|++..|.++|+... ...|+.-.|++.|+.=.+-..++.|..+|++..- +.|++.+|---..-=-
T Consensus 152 E~LgNi~gaRqiferW~--------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~--- 218 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWM--------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEE--- 218 (677)
T ss_pred HHhcccHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHH---
Confidence 45688999999999863 4678889999999999999999999999999875 4599988877666655
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC--cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~--~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
++|.+..|..+|. ..++..|-. +...+++.-.- =..+..++.|.-+|.--... .|.
T Consensus 219 -------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~pk 276 (677)
T KOG1915|consen 219 -------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IPK 276 (677)
T ss_pred -------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cCc
Confidence 8888888888884 222210111 11112221111 11223334444444322221 222
Q ss_pred ccccchhHHhhccc-----------------cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC
Q 004610 319 GHMKLNSQLLDGRS-----------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (742)
Q Consensus 319 ~~ty~~~~li~~~~-----------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (742)
..+- .|..+|. ...+.-+..++.. -..|--+|-- .+..--..|+.+...++|+.....
T Consensus 277 ~rae---eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfd-ylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 277 GRAE---ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFD-YLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred ccHH---HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHH-HHHHHHhcCCHHHHHHHHHHHHcc
Confidence 2221 2222222 1111223333332 1123334444 455555668899999999987764
Q ss_pred CCCCCH--HHHHHH----HHH----HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----HcCCHHHHHHHHHH
Q 004610 382 EVPMNE--ASLTAV----GRM----AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACSVEEH 447 (742)
Q Consensus 382 g~~pd~--~tyn~L----i~~----~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~----~~g~~~~A~~l~~~ 447 (742)
++|-. .-|--. |+- =....+++.+.++++...+. +.-..+||.-+--.|+ ++.++..|.+++..
T Consensus 352 -vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 352 -VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 45521 111111 111 12467888899999888773 5556788888776666 46788899988887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 448 M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+ |..|-..+|-.-|..=.+-+++|+...|+.+..+-
T Consensus 430 AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 430 AI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred Hh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 65 67788888888888888899999999999888765
No 84
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.09 E-value=0.16 Score=48.01 Aligned_cols=91 Identities=10% Similarity=-0.098 Sum_probs=43.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004610 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (742)
Q Consensus 393 Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (742)
+-..+...|++++|...|....... ..+...|..+-..+.+.|++++|...|+...... ..+...+..+-.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555544331 1233444444444555555555555555555432 2234444444455555555
Q ss_pred HHHHHHHHHHHHH
Q 004610 473 GDRVYYLLHKLRT 485 (742)
Q Consensus 473 ~~~A~~ll~~M~~ 485 (742)
.++|...|+.-..
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 85
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.06 E-value=0.1 Score=42.93 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (742)
+|..+...+...|++++|..++++..+.. ..+...+..+-..+...|+.++|.+.++...... ..+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999987652 2334667778888888999999999999988764 334467888888999
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 004610 469 EAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (742)
..|+.++|...+.+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887654
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.05 E-value=0.21 Score=45.94 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=48.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+...+.+.|+.++|.+.|+.....+ +.+...|..+-..+.+.|++++|..+++...+.+ ..+...|..+-..|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3344555566666666666555433 2344555555555656666666666666544432 2233344444445555566
Q ss_pred HHHHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLE 450 (742)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (742)
.++|...|+...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.04 E-value=0.9 Score=49.38 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHH
Q 004610 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEE--PELEALLRVSV 468 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~--~ty~~Li~~~~ 468 (742)
.+...+...|++++|...+++..+.. ..+...+..+-..|...|++++|...+++.....- .|+. ..|..+-..+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445555666666666666655432 12233444455555566666666666665544321 1222 23334555556
Q ss_pred HcCCHHHHHHHHHHHH
Q 004610 469 EAGKGDRVYYLLHKLR 484 (742)
Q Consensus 469 ~~g~~~~A~~ll~~M~ 484 (742)
..|+.++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 6666666666666653
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.061 Score=56.77 Aligned_cols=192 Identities=9% Similarity=-0.008 Sum_probs=127.0
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhh-ccc---------cccCCCchhhhhcCCCcCHHhhHHHHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLD-GRS---------NLERGPDDQSRKKDWSIDNQDADEIRLSEDA 363 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~-~~~---------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~ 363 (742)
+.+.+++.+|..+..++.- ..|-..... -+.. ++. +.|...|.-.-..+.+-|.+.-.-.+-+.+.
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilK--gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILK--GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHH--HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 7788888888888886521 122222221 1111 111 2333344444444555454444444667777
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHHcCCHHHHH
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKAC 442 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~~~g~~~~A~ 442 (742)
-..++++++-.++..+..-.--|.+-|| +..+.+..|...+|+++|-.+....+ -|..+|-+++ .+|.+++..+.||
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHH
Confidence 7888999998888888765556666666 78899999999999999977654433 4667776654 5788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHH
Q 004610 443 SVEEHMLEHGVYPEEPELEA-LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (742)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~-Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~ 496 (742)
.++-.|.. ..+..+.-- +-+-|-+++.+--|-+.|+++... .|+|+-|.
T Consensus 449 ~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 449 DMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 88766642 223333333 335577889998888999988877 78887554
No 89
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.98 E-value=0.32 Score=44.74 Aligned_cols=99 Identities=8% Similarity=-0.039 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 386 d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
+......+...+...|+.++|...|+.....+ ..+...|..+-..+.+.|+.++|..+++...+.+ ..+...+..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34556677788889999999999999987753 3366777778888889999999999999887764 445677777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 004610 466 VSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.|...|+.++|...|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999988776
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.90 E-value=0.29 Score=46.20 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=92.2
Q ss_pred CchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (742)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g 417 (742)
+.+...++.+..|...+.. +-..+...|++++|.+.|+...... +.+...|..+-..+.+.|++++|...|+......
T Consensus 11 ~~~~~~~~al~~~p~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 11 IPEDILKQLLSVDPETVYA-SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred CHHHHHHHHHHcCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444444444333333444 5567789999999999999988764 4578889999999999999999999999988652
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004610 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (742)
Q Consensus 418 ~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (742)
..+...+..+-.++.+.|+.++|...|+...+. .|+...|..
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~ 130 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSE 130 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 346677777888899999999999999998764 466555543
No 91
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.88 E-value=0.086 Score=58.24 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=93.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
+...++++.|..+|+++.+.. |++... |...+...++-.+|.+
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev~~~-----------------------------------LA~v~l~~~~E~~AI~ 221 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEVAVL-----------------------------------LARVYLLMNEEVEAIR 221 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcHHHH-----------------------------------HHHHHHhcCcHHHHHH
Confidence 556788999999999998874 443222 5666667778889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHML 449 (742)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (742)
++++..... +-|......-.+-|.+.++.+.|+++.+++.+. .|+. .+|..|..+|.+.|+++.|...++.|.
T Consensus 222 ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 222 LLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999887642 446777777778888999999999999998765 4654 599999999999999999999998876
No 92
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.85 E-value=0.27 Score=46.36 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=87.1
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh--hHHH
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGP 427 (742)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--ty~~ 427 (742)
|.. ++..+ ..++...+.+.++.+.... |+. ...-.+-..+...|++++|...|+......-.|... ..-.
T Consensus 15 y~~-~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQ-ALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHH-HHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 444 55555 4888899999999998864 332 222234467788999999999999998876333322 2223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (742)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (742)
|-..+...|+.++|...++....... ....+..+=+.|.+.|+.++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55667778999999999977443332 334566677888999999999998865
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.82 E-value=0.32 Score=56.17 Aligned_cols=224 Identities=9% Similarity=0.000 Sum_probs=153.7
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.+...|-..+|..+|+++ ..|--+|.+|+..|+...|..+..+-.+ -+||+.-|..|.+..-
T Consensus 407 ll~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~- 468 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH- 468 (777)
T ss_pred HHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc-
Confidence 455778888999999999 8899999999999999999998887776 5789999999988877
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcC-CCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFS 317 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G-~~P 317 (742)
.---.++|.++++.. +.+. -..++-+ ....++++++.+.|+.-.+.. +.+
T Consensus 469 ---------d~s~yEkawElsn~~------sarA-----~r~~~~~---------~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 469 ---------DPSLYEKAWELSNYI------SARA-----QRSLALL---------ILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred ---------ChHHHHHHHHHhhhh------hHHH-----HHhhccc---------cccchhHHHHHHHHHHHhhcCccch
Confidence 444578888888621 1110 0001111 334688889988887543321 111
Q ss_pred CccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 004610 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRM 396 (742)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~Li~~ 396 (742)
.+|-. +=.+..+.++++.|.+-|..-.. ..| +...||.+-.+
T Consensus 520 ----------------------------------~~wf~-~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 520 ----------------------------------GTWFG-LGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTA 562 (777)
T ss_pred ----------------------------------hHHHh-ccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHH
Confidence 12222 11233466788888888876554 244 45779999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 004610 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPELEALLRVS 467 (742)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~~ty~~Li~~~ 467 (742)
|.+.|+-.+|+..+++-.+.+ .-+...|-.-+....+.|.+++|.+.+.+|.+... ..|......++...
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 999999999999999887776 44555666667777888999999998888765321 12444444444443
No 94
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.80 E-value=2.3 Score=50.52 Aligned_cols=283 Identities=10% Similarity=0.011 Sum_probs=152.4
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAA 240 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~~~ 240 (742)
..|+..+|.+++.+.+.+.. -+...|-+|=..|-..|+...++..+-.. ..+.| |..-|-.+-....
T Consensus 151 arg~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~--- 218 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSE--- 218 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHH---
Confidence 34999999999999965432 23378999999999999999998776433 33444 4455555555555
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCc---ccccccccccccccccccccCChHHHHHHHHHHHHcCCCC
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN---NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~---~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~P 317 (742)
+.|++.+|.-.|. +.... .-.+ ..-+..| |-+.|+...|..-|.+|...-- |
T Consensus 219 -------~~~~i~qA~~cy~-------rAI~~-~p~n~~~~~ers~L---------~~~~G~~~~Am~~f~~l~~~~p-~ 273 (895)
T KOG2076|consen 219 -------QLGNINQARYCYS-------RAIQA-NPSNWELIYERSSL---------YQKTGDLKRAMETFLQLLQLDP-P 273 (895)
T ss_pred -------hcccHHHHHHHHH-------HHHhc-CCcchHHHHHHHHH---------HHHhChHHHHHHHHHHHHhhCC-c
Confidence 6677777777764 11111 0000 0001111 5566777777777777665421 1
Q ss_pred Cccccc---hhHHhhccc-----cccCCCchhhhh-cCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHH----------
Q 004610 318 NGHMKL---NSQLLDGRS-----NLERGPDDQSRK-KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM---------- 378 (742)
Q Consensus 318 d~~ty~---~~~li~~~~-----~~a~~~~~~m~~-~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M---------- 378 (742)
..+-.. ...+++.+- ..|...+..-.. .+-.-+...+|. ++..|.+..+.+.|.....++
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni-~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNI-LAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHH-HHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 111110 000000000 000000110000 000111112222 333444444444444433333
Q ss_pred ---------------------------------------------------HhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 004610 379 ---------------------------------------------------CLDE--VPMNEASLTAVGRMAMSMGDGDM 405 (742)
Q Consensus 379 ---------------------------------------------------~~~g--~~pd~~tyn~Li~~~~~~g~~~~ 405 (742)
.... +.-++..|.-+.+++...|++.+
T Consensus 353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred hhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHH
Confidence 3333 22233456666667777888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 406 A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
|+.+|..+...-..-+...|-.+=.+|-..|..+.|.+.|+..+.. .|+ ...--+|-..+-+.|+.++|.+.+..|.
T Consensus 433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8888887776644445667777777777778888888888777643 233 2222334444567788888888887775
No 95
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.48 Score=48.61 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=87.7
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (742)
..+.|..+++-|...+++|.+-. +..|.+-|..++.+ .+.+.+|+-+|++|-++ ..|+.-+-+-...++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 33456678889999999998743 67888877776665 55688999999999765 778888888888888889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 004610 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (742)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~ll~~M~~~ 486 (742)
|++++|..++++...+.- -+..|..-+|-.--..|.. +-..+.+..++..
T Consensus 221 ~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999999987752 3445554455444445544 3344555666544
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.49 Score=50.16 Aligned_cols=202 Identities=14% Similarity=0.095 Sum_probs=116.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-
Q 004610 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD- 276 (742)
Q Consensus 198 I~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~- 276 (742)
|--|-+.+++.+|..+..++. -..| |.-++.+...+..|. +-.....++-|...|. |...++..
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~--PttP----~EyilKgvv~aalGQ-e~gSreHlKiAqqffq--------lVG~Sa~ec 356 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLD--PTTP----YEYILKGVVFAALGQ-ETGSREHLKIAQQFFQ--------LVGESALEC 356 (557)
T ss_pred eeeecccccHHHHHHHHhhcC--CCCh----HHHHHHHHHHHHhhh-hcCcHHHHHHHHHHHH--------Hhccccccc
Confidence 335778899999999877653 1223 333444444222110 0002223455666663 44443443
Q ss_pred cccc-cccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhH
Q 004610 277 NNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (742)
Q Consensus 277 ~~vt-yn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn 355 (742)
|.+. =-++-.+ +--..++|+.+-.++..+.-=.--|.+.||
T Consensus 357 DTIpGRQsmAs~------fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-------------------------------- 398 (557)
T KOG3785|consen 357 DTIPGRQSMASY------FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-------------------------------- 398 (557)
T ss_pred ccccchHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCcchhhhH--------------------------------
Confidence 4433 1222222 333344555555554444332222333332
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-HHH
Q 004610 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA-VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFC 433 (742)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~-Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~-~~~ 433 (742)
+-.+++..|...+|.++|-......+ -|..+|.+ |.++|.+++.++.|++++-.|. -..+..+.--+|. -|-
T Consensus 399 --~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 399 --LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCY 472 (557)
T ss_pred --HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHH
Confidence 67899999999999999976654433 35566655 5568889999999999886653 2234444444444 567
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPEL 460 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (742)
+++++--|-+.|++++.. .|+..-|
T Consensus 473 k~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 889988888888888765 3555544
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.59 E-value=0.89 Score=56.07 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~ 219 (742)
..|-.-|.-....++.+.|.+++++...
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~ 1486 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALK 1486 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhh
Confidence 6777788888899999999999998873
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.56 E-value=1.4 Score=54.42 Aligned_cols=141 Identities=13% Similarity=0.115 Sum_probs=110.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCN 434 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~~ 434 (742)
|..-|.+.+..++|.++|+.|.++- .-....|...+..+.+..+.++|..++++-.+. .|. +..-.-.+..-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 8899999999999999999998752 245678999999999999999999999886543 354 2333334445567
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHH-HHHHHHhhc
Q 004610 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNS 504 (742)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~-~~I~~~~~~ 504 (742)
.|+.+.++.+|+.....- .--...|+..|+.=.++|+.+.+..+|++.... .+++--. -....|...
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l--~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL--KLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc--CCChhHhHHHHHHHHHH
Confidence 899999999999988653 223568999999999999999999999999998 6776622 225555543
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.54 E-value=1.9 Score=43.97 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=60.0
Q ss_pred cCHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCChhhH
Q 004610 366 YAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSY 425 (742)
Q Consensus 366 g~~~~A~~lf~~M~~~g~~pd~-~ty-----------------n~Li~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~ty 425 (742)
|+.++|.+.|+.+.... |+. ..+ -.+...+.+.|+.++|...+++..... -......+
T Consensus 129 ~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~ 206 (235)
T TIGR03302 129 TAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEAL 206 (235)
T ss_pred HHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHH
Confidence 55667777777665542 221 111 134567888999999999999987652 11235678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
..+..++.+.|+.++|...++.+...
T Consensus 207 ~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 207 ARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88999999999999999999888754
No 100
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.49 E-value=0.14 Score=47.32 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 386 d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
|+.++.++|-++++.|+++....+++..- |+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45667777777777777776666665432 22221100 0000 0112235677777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcc-CCCChhHHHHHHHHhh
Q 004610 466 VSVEAGKGDRVYYLLHKLRTSV-RKVSPSTADVIAKWFN 503 (742)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~~-~~~~p~t~~~I~~~~~ 503 (742)
+|+..|++..|+++++...+.- +.++..+|..+..|+-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777776666542 1223336666555543
No 101
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.48 E-value=0.65 Score=49.57 Aligned_cols=123 Identities=12% Similarity=0.021 Sum_probs=94.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g 436 (742)
+=..|.+.|+.++|...|++..+.. +.+...|+.+-..+...|++++|...|+...+. .|+ ..+|..+-..+...|
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 4456788899999999999887754 346789999999999999999999999988754 454 566677777788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
+.++|.+.|+...+. .|+..........+...++.++|...|.+...
T Consensus 147 ~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 147 RYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999999998865 45543222223334456789999999976543
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.64 Score=48.29 Aligned_cols=179 Identities=12% Similarity=0.062 Sum_probs=107.0
Q ss_pred CCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHH
Q 004610 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (742)
Q Consensus 248 k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~l 327 (742)
+.|+.++|.+-|. +..+-+|..+.+.||..+.. | +.|+.+.|+++..++.++|++-.. -++.|..
T Consensus 156 kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH------y-~~~qyasALk~iSEIieRG~r~HP-ElgIGm~ 220 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH------Y-SSRQYASALKHISEIIERGIRQHP-ELGIGMT 220 (459)
T ss_pred ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH------H-hhhhHHHHHHHHHHHHHhhhhcCC-ccCccce
Confidence 8999999999995 55554577788888887654 3 678999999999999999965221 1111111
Q ss_pred hhccccccCCCc--hhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHH
Q 004610 328 LDGRSNLERGPD--DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGD 404 (742)
Q Consensus 328 i~~~~~~a~~~~--~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~Li~~~~~~g~~~ 404 (742)
.+|-- ++.+- -.|...|+ +..+|- =-..+.+.++.+.|.+-+-+|.-+ .-..|.+|...+.-.-. .+++.
T Consensus 221 tegiD--vrsvgNt~~lh~Sal---~eAfNL-KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~ 293 (459)
T KOG4340|consen 221 TEGID--VRSVGNTLVLHQSAL---VEAFNL-KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPT 293 (459)
T ss_pred eccCc--hhcccchHHHHHHHH---HHHhhh-hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCcc
Confidence 11110 00000 00000000 001111 113355778888898888888643 34567777765543322 34444
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (742)
Q Consensus 405 ~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (742)
+..+-+.-+....- --..||..++--||++.-++.|-.++.+-.
T Consensus 294 ~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred ccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 44444444443322 235788889999999999999998887643
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.34 E-value=5.6 Score=45.77 Aligned_cols=300 Identities=11% Similarity=0.004 Sum_probs=177.1
Q ss_pred HHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004610 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (742)
Q Consensus 157 ~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~ 236 (742)
++.+.+.+...+|++-+..-+.+ +.-....--+--+.+.+.+++++|..+|..+... .||.+-|.-.+..+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~-------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQ-------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhH-------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 44566777777777766654221 1111122233446678899999999999999875 48888888877766
Q ss_pred HccccCCcccCCCCCHHHHH-HHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCC
Q 004610 237 SSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (742)
Q Consensus 237 ~~~~~~~~~~~k~G~~~~A~-~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~ 315 (742)
.. +.-..-++. .+|...+ +..... .+.--..-+. +-.....+....++..+.+.|+
T Consensus 263 lg---------k~~d~~~~lk~ly~~ls---~~y~r~-e~p~Rlplsv----------l~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 263 LG---------KIKDMLEALKALYAILS---EKYPRH-ECPRRLPLSV----------LNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HH---------HHhhhHHHHHHHHHHHh---hcCccc-ccchhccHHH----------hCcchhHHHHHHHHHHHhhcCC
Confidence 61 111222333 4443111 111111 1110000111 1112233555677778888885
Q ss_pred CC---Cccccc--------hhHHhhccc--cccCCCchhhhhcCC-CcCHHhhHH-HHHHHHHhhcCHHHHHHHHHHHHh
Q 004610 316 FS---NGHMKL--------NSQLLDGRS--NLERGPDDQSRKKDW-SIDNQDADE-IRLSEDAKKYAFQRGFEIYEKMCL 380 (742)
Q Consensus 316 ~P---d~~ty~--------~~~li~~~~--~~a~~~~~~m~~~g~-~pd~~tyn~-~lI~~~~k~g~~~~A~~lf~~M~~ 380 (742)
.| |..+.. ...++..|. ......|...-...+ .|....|+. .++..|-+.|+++.|.+.++.-..
T Consensus 320 p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 320 PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 54 444444 011111121 011111211111112 455555554 366888899999999999998776
Q ss_pred CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004610 381 DEVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459 (742)
Q Consensus 381 ~g~~pd~-~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (742)
. .|+. .-|-+=.+.+...|++++|..++++-.+.. .||...=+-.-....+++++++|.++.....+.|. +...
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~ 474 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVN 474 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhh
Confidence 4 4544 345555688999999999999999987764 37776666777778889999999999999888875 4333
Q ss_pred HHHHH----------HHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 460 LEALL----------RVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 460 y~~Li----------~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
+-+-+ .+|.+.|++.+|++=|+.+...-...+.+
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~d 518 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSED 518 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 32222 34677788888888777776553333433
No 104
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=3.5 Score=45.60 Aligned_cols=126 Identities=10% Similarity=-0.034 Sum_probs=106.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+-+.|+-.++-++|...|+.-.+-+ +-....|+.|=.-|....+...|.+-++.-.+- .+-|-+.|-.|=++|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcc
Confidence 5577888899999999999887754 234578888889999999999999999987766 45688899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..-|.-.|++...-. .-|...|.+|=++|.+-++.++|.+.|..-..-
T Consensus 414 h~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 414 HFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999999999877542 347899999999999999999999999888665
No 105
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.19 E-value=1.4 Score=44.53 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=101.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g 436 (742)
|--+|...|+...|..-+++..+.. +-+.-+|.++...|-+.|+.+.|.+-|+.-.+. .|+ ..+-|-.=.-+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 4468889999999999999888764 335678899999999999999999999876543 333 233333444568889
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHHHHHHhhchH
Q 004610 437 DVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKE 506 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~~~~ 506 (742)
..++|...|++....--.|. ..||.-+--+..+.|+.+.|.+.|++-.+......+.....-...++.+.
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 99999999988876533222 35666666666788999999999988776633333333333444444443
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.13 E-value=0.52 Score=41.88 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 004610 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALL 464 (742)
Q Consensus 391 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd~~ty~~Li 464 (742)
-.+...+.+.|+.++|.+.|..+.... |+ ...+..+-..+.+.|+.+.|...|+...... -......+..+-
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 334444455555555555555554321 11 1233334445555555555555555554331 011123344444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 004610 465 RVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..+.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 4555556666666666555554
No 107
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.12 E-value=0.2 Score=52.62 Aligned_cols=154 Identities=8% Similarity=-0.043 Sum_probs=116.7
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
|-+-|...+|.+.|..-.+.---||++.| |-..|.+-.+.+.|+.
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~~dTfll-----------------------------------LskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPHPDTFLL-----------------------------------LSKVYQRIDQPERALL 277 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCchhHHHH-----------------------------------HHHHHHHhccHHHHHH
Confidence 88889999999999877665444443333 6688999999999999
Q ss_pred HHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 374 IYEKMCLDEVPMNEASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 374 lf~~M~~~g~~pd~~ty-n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
+|.+-.+. -|-.+|| .-+.+.+-..++.++|.+++++..+. -.-++....++-.+|.-.++.|.|+..|.++...|
T Consensus 278 ~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 278 VIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 99887654 3555554 56777888899999999999998765 23466666666777888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+. +...|+-+--+|.-.+++|-++--|.+-...
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 76 4455555555666778888888777766544
No 108
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=4.1 Score=45.37 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=90.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----C--CCChhhHHHHHHHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----I--NPRLRSYGPALSVF 432 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g-----~--~Pd~~ty~~lI~~~ 432 (742)
.+.-|.+++++++..|++-+++ ++--...||-....+...++++.|.+.|+...+.. + .+-..+--.+|..-
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 3444677999999999998876 44456789999999999999999999998765431 1 11111112222222
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
-.+++..|..++....+.. .-....|.+|-..-.+.|+.++|.++|++-..-
T Consensus 515 -wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 515 -WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2489999999999887553 224577899999999999999999999987554
No 109
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.97 E-value=0.77 Score=40.74 Aligned_cols=95 Identities=8% Similarity=-0.060 Sum_probs=73.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFC 433 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~--~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~ty~~lI~~~~ 433 (742)
+...+.+.|++++|.+.|.++....- ......+..+...+.+.|++++|.+.|+.+.... -......+..+-.++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 55677889999999999999986531 1123466778999999999999999999987642 1112345666777788
Q ss_pred HcCCHHHHHHHHHHHHHCC
Q 004610 434 NNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~g 452 (742)
+.|+.++|...++++.+..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HhCChHHHHHHHHHHHHHC
Confidence 8999999999999998774
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.90 E-value=3.8 Score=49.87 Aligned_cols=218 Identities=14% Similarity=0.063 Sum_probs=128.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccc
Q 004610 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (742)
Q Consensus 188 ~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s 266 (742)
+.+...|-.||..+-..+++++|.++.++-.+. .-.+...-|..+|..-. +...++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~------------~~~~~~~lv-------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR------------RPLNDSNLL-------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh------------cchhhhhhh--------
Confidence 446678999999999999999999999966543 22344444444422222 222222221
Q ss_pred hhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcC
Q 004610 267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (742)
Q Consensus 267 ~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g 346 (742)
.++.. +....++.....+...|...+-
T Consensus 88 ----------------~~l~~------~~~~~~~~~ve~~~~~i~~~~~------------------------------- 114 (906)
T PRK14720 88 ----------------NLIDS------FSQNLKWAIVEHICDKILLYGE------------------------------- 114 (906)
T ss_pred ----------------hhhhh------cccccchhHHHHHHHHHHhhhh-------------------------------
Confidence 11111 3333344333444444433221
Q ss_pred CCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004610 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
+...+-+ +-.+|-+.|+.++|.++++++.+-. +-|..+.|-+...|+.. ++++|.+++..-...-+ +..-|+
T Consensus 115 ---~k~Al~~-LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~ 186 (906)
T PRK14720 115 ---NKLALRT-LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYV 186 (906)
T ss_pred ---hhHHHHH-HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcch
Confidence 1111223 6678888899999999999988876 55788888888888888 99999988887654411 122222
Q ss_pred HHHH---HHHHc--CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 427 PALS---VFCNN--GDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 427 ~lI~---~~~~~--g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+.. -+|.. -+++.=..+.+.+... |..--..++-.|-..|-...+++++..+|+.+.+.
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 2222 12221 2233333333333322 33344556666667788888899999999888776
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.80 E-value=1.1 Score=45.96 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=96.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
.+....+.|++.+|...|.+...- -++|..+||.+=-+|.+.|+.++|..-|.+-.+-- .-+...+|-|--.|.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCC
Confidence 567777899999999999998764 37899999999999999999999999888776542 1234455666666778899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
.+.|..++.+-...+.. |...-.-|--.....|++++|..+-..-
T Consensus 184 ~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 184 LEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999998877633 4555566677778899999998885543
No 112
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.75 E-value=4 Score=46.83 Aligned_cols=301 Identities=11% Similarity=0.035 Sum_probs=162.9
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcccc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (742)
..++.++...++.+..+.-.-+...-.|. ..|-.+-+.|-..|+++.|..+|+...+-..+ .+.....+=-.|+....
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMEL 436 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHH
Confidence 44667777888888765432222222344 67888899999999999999999998765433 22222222223332221
Q ss_pred CCcccCCCCCHHHHHHHhhhhcccchhhcccC------CCCcc--c------ccccccccccccccccccCChHHHHHHH
Q 004610 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMDNN--G------QLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (742)
Q Consensus 242 ~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~------g~~~~--v------tyn~lI~~~~~~~~~~~~g~~~~A~~lf 307 (742)
+..+++.|..+...- ..+.... |-.++ . .|.-.++. --..|-++....++
T Consensus 437 ------rh~~~~~Al~lm~~A----~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~vY 500 (835)
T KOG2047|consen 437 ------RHENFEAALKLMRRA----THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAVY 500 (835)
T ss_pred ------hhhhHHHHHHHHHhh----hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHHH
Confidence 445566777665311 0111110 00111 1 12222332 33446777777888
Q ss_pred HHHHHcCCCCCccccchhHHhh--ccccccCCCchhhhhcCCCcCH-HhhHHHHHHHHHhhc--CHHHHHHHHHHHHhCC
Q 004610 308 NEKENLGQFSNGHMKLNSQLLD--GRSNLERGPDDQSRKKDWSIDN-QDADEIRLSEDAKKY--AFQRGFEIYEKMCLDE 382 (742)
Q Consensus 308 ~~M~~~G~~Pd~~ty~~~~li~--~~~~~a~~~~~~m~~~g~~pd~-~tyn~~lI~~~~k~g--~~~~A~~lf~~M~~~g 382 (742)
+.+....+....+..|...+++ .|..++.++++.-+.-=--|++ -.||+.|...-.+.| .+++|..+|++..+ |
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 8887776554443333222221 2223333322222221112444 246665544444444 78999999999887 8
Q ss_pred CCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004610 383 VPMNEASLTAVGRM--AMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (742)
Q Consensus 383 ~~pd~~tyn~Li~~--~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (742)
|+|.-.-+--|+-+ =-+.|....|+.++++.. .++.+. ...||+.|.--...=-+-...++|++.++. -||..
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~ 656 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSK 656 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHH
Confidence 88755433222221 124677788888888843 335443 467787776555443344556666666654 45555
Q ss_pred HHHHHHHH---HHHcCCHHHHHHHHHHHH
Q 004610 459 ELEALLRV---SVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 459 ty~~Li~~---~~~~g~~~~A~~ll~~M~ 484 (742)
.-..-|+. =++-|.+++|..++..-.
T Consensus 657 ~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 657 AREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 43333332 266777787777775543
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.94 Score=46.56 Aligned_cols=198 Identities=10% Similarity=0.094 Sum_probs=111.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccch
Q 004610 189 SEQFQLRVELDMCSKRGDVMGA-IRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (742)
Q Consensus 189 P~~~tyn~lI~~~~~~g~~~~A-~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~ 267 (742)
|.......+-.....-++-+.- -++.+++......-+...-..-.-.|+ +.|+.++|.+.....
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~----------~~~~~deAl~~~~~~----- 134 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYM----------HDGDFDEALKALHLG----- 134 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhh----------cCCChHHHHHHHhcc-----
Confidence 3334444333333334443332 334555554444444333333333455 778888888887511
Q ss_pred hhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCC
Q 004610 268 ELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347 (742)
Q Consensus 268 em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~ 347 (742)
. ++ ....-|.- . +.+..+++-|.+.++.|.+.. +..|.+ .|-.
T Consensus 135 ---~--~l-E~~Al~Vq--I------~lk~~r~d~A~~~lk~mq~id---ed~tLt--QLA~------------------ 177 (299)
T KOG3081|consen 135 ---E--NL-EAAALNVQ--I------LLKMHRFDLAEKELKKMQQID---EDATLT--QLAQ------------------ 177 (299)
T ss_pred ---c--hH-HHHHHHHH--H------HHHHHHHHHHHHHHHHHHccc---hHHHHH--HHHH------------------
Confidence 0 11 11111111 1 445667788888888887642 222332 2222
Q ss_pred CcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004610 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427 (742)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (742)
..|+...-.+.+.+|+-+|++|.++ ..|+..+.|.+..++...|++++|..++++...+.- -+..|..-
T Consensus 178 ---------awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~N 246 (299)
T KOG3081|consen 178 ---------AWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLAN 246 (299)
T ss_pred ---------HHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHH
Confidence 2444455566899999999999764 579999999999999999999999999999876632 23333333
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHH
Q 004610 428 ALSVFCNNGDV-DKACSVEEHML 449 (742)
Q Consensus 428 lI~~~~~~g~~-~~A~~l~~~M~ 449 (742)
+|-.--..|.- +--.+....+.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHH
Confidence 44433333432 33333444443
No 114
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.60 E-value=0.34 Score=44.69 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=47.7
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcC
Q 004610 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAG 471 (742)
Q Consensus 417 g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g 471 (742)
.+.|+..+-.+++.+|+..|++..|.++.+...+. ++..+..+|..|+.-....-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999998754 88888999999998765443
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.58 E-value=1 Score=44.97 Aligned_cols=112 Identities=11% Similarity=0.068 Sum_probs=85.2
Q ss_pred CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHCCCCCChhhHH
Q 004610 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~-~~~g~--~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
|...|.. |-..|...|++++|.+.|++..... +-|...+..+-.++ ...|+ .++|.+++++..+..- -+...+.
T Consensus 72 ~~~~w~~-Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~ 148 (198)
T PRK10370 72 NSEQWAL-LGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALM 148 (198)
T ss_pred CHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHH
Confidence 3334445 7778889999999999999888764 34677888888764 67777 5999999999887642 3567777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004610 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (742)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (742)
.+-..+.+.|++++|...|+.+.+.. .|+..-+. +|++
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence 78888999999999999999998764 45554443 3344
No 116
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.54 E-value=0.38 Score=49.57 Aligned_cols=84 Identities=24% Similarity=0.273 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g----------------~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
.++--...++.|++.|+.-|+.+|+.||+.+=+.. +-+=|..++++|+.+|+.||..+-..||+
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 34444444556666666666666666666554432 12346789999999999999999999999
Q ss_pred HHHHcCCH-HHHHHHHHHHHH
Q 004610 466 VSVEAGKG-DRVYYLLHKLRT 485 (742)
Q Consensus 466 ~~~~~g~~-~~A~~ll~~M~~ 485 (742)
++.+.|.. .+..+++--|.+
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HhccccccHHHHHHHHHhhhh
Confidence 99988864 355555555543
No 117
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.30 E-value=0.77 Score=52.78 Aligned_cols=76 Identities=11% Similarity=0.218 Sum_probs=40.1
Q ss_pred HHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 004610 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (742)
+-....++.+|+.+++.+...... ..-|.-+.+-|+..|+++.|.++|-+ .+ .++-.|.+|.++|.++.
T Consensus 741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e---~~------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTE---AD------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHh---cc------hhHHHHHHHhccccHHH
Confidence 334445555566666555543221 22345555566666666666666643 12 13455666666666666
Q ss_pred HHHHHHH
Q 004610 441 ACSVEEH 447 (742)
Q Consensus 441 A~~l~~~ 447 (742)
|+++-++
T Consensus 810 a~kla~e 816 (1636)
T KOG3616|consen 810 AFKLAEE 816 (1636)
T ss_pred HHHHHHH
Confidence 6665433
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.21 E-value=4.5 Score=50.13 Aligned_cols=273 Identities=9% Similarity=-0.014 Sum_probs=157.3
Q ss_pred HhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CC--HHHHHHHHHH
Q 004610 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IK-LG--QYHYNVLLYL 235 (742)
Q Consensus 161 ~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~G--i~-pd--~~tyn~LL~~ 235 (742)
...++.++|...+++..+.- +......-...++.+-..+...|++++|...+.+..... .. +. ..+++.+-..
T Consensus 463 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL--PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 35678888888888764421 111000012345666667788999999999999887321 11 11 2233334444
Q ss_pred HHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCc----ccccccccccccccccccccCChHHHHHHHHHHH
Q 004610 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (742)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~----~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~ 311 (742)
+. ..|++++|...+... .+..+..+..+ ...+..+-.. +...|++++|...+.+..
T Consensus 541 ~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 541 LF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKGL 600 (903)
T ss_pred HH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHhH
Confidence 55 678999998887411 11111112111 1112222222 455699999999888765
Q ss_pred HcCC--CCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC----CCCC
Q 004610 312 NLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM 385 (742)
Q Consensus 312 ~~G~--~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g~~p 385 (742)
...- .+.. ....+.. +-..+...|+.++|.+.+++.... +...
T Consensus 601 ~~~~~~~~~~------------------------------~~~~~~~-la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 601 EVLSNYQPQQ------------------------------QLQCLAM-LAKISLARGDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred HhhhccCchH------------------------------HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence 4311 0110 0111222 445667889999999998877432 1111
Q ss_pred CHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC
Q 004610 386 NEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE 456 (742)
Q Consensus 386 d~~ty--n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd 456 (742)
..... ...+..+...|+.+.|...+............ ..+..+-.++...|+.++|..++++.... |..++
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 11010 11234455689999999998775432111111 11334556678889999999999887653 43332
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 457 -EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 457 -~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..++..+-.++.+.|+.++|...+.+..+.
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 234556666778999999999999888765
No 119
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=2.4 Score=50.89 Aligned_cols=216 Identities=10% Similarity=0.094 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccc
Q 004610 205 GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG 284 (742)
Q Consensus 205 g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~l 284 (742)
+.+++|.++-++.. .+..|+.|-.+=. ..|.+.+|++-|- ...|...|--+
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL----------~~~~v~dAieSyi-------------kadDps~y~eV 1139 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQL----------QGGLVKDAIESYI-------------KADDPSNYLEV 1139 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHH----------hcCchHHHHHHHH-------------hcCCcHHHHHH
Confidence 55666665544432 3456777777666 6778888888772 12255568778
Q ss_pred cccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHh
Q 004610 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (742)
Q Consensus 285 I~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (742)
|.. ..+.|.+++-.+.+...++..-.|.+-+- ||-||.+..+ +.++..-=.-||+.-... +=+-|..
T Consensus 1140 i~~------a~~~~~~edLv~yL~MaRkk~~E~~id~e----Li~AyAkt~r--l~elE~fi~gpN~A~i~~-vGdrcf~ 1206 (1666)
T KOG0985|consen 1140 IDV------ASRTGKYEDLVKYLLMARKKVREPYIDSE----LIFAYAKTNR--LTELEEFIAGPNVANIQQ-VGDRCFE 1206 (1666)
T ss_pred HHH------HHhcCcHHHHHHHHHHHHHhhcCccchHH----HHHHHHHhch--HHHHHHHhcCCCchhHHH-HhHHHhh
Confidence 888 88899999998888777776666665442 2333321111 011111111122211111 1222333
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l 444 (742)
.+.++.|.-+|. ++.-|.-|...+...|++..|.+--+. .-+..||--+-.+|...+.+.-|
T Consensus 1207 ~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred hhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhchhhhhHH---
Confidence 333333333332 223345555555555555555443322 13556666666666665555433
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (742)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (742)
.|-...+........-||.-|-..|.+++...+++.
T Consensus 1269 --QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1269 --QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred --HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 344444556667778888888888888888777653
No 120
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.11 E-value=5 Score=46.35 Aligned_cols=146 Identities=8% Similarity=-0.043 Sum_probs=97.1
Q ss_pred cCCCcCHHhhHHHHHHHHHhh-----cCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC--------CHHHHHHHH
Q 004610 345 KDWSIDNQDADEIRLSEDAKK-----YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMG--------DGDMAFDMV 410 (742)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~-----g~~~~A~~lf~~M~~~g~~pd-~~tyn~Li~~~~~~g--------~~~~A~~l~ 410 (742)
.+...|...|.. .+.+.... +..+.|.++|++..+. .|| ...|..+..++.... ++..+.+..
T Consensus 331 ~~~~~~~~Ay~~-~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTL-FYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 445567777777 55554332 2477999999998875 465 344554444333221 122333333
Q ss_pred HHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 004610 411 KRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (742)
Q Consensus 411 ~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~ 489 (742)
...... ....+...|.++-......|+.++|...+++..+.. |+...|..+-..+...|+.++|.+.+.+-... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 332222 233345777777555556799999999999999876 78889999999999999999999999887655 5
Q ss_pred CChhHHHH
Q 004610 490 VSPSTADV 497 (742)
Q Consensus 490 ~~p~t~~~ 497 (742)
+...||-.
T Consensus 484 P~~pt~~~ 491 (517)
T PRK10153 484 PGENTLYW 491 (517)
T ss_pred CCCchHHH
Confidence 55556644
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.07 E-value=13 Score=46.22 Aligned_cols=276 Identities=13% Similarity=0.020 Sum_probs=151.1
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~--tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~~ 235 (742)
..++.++|...++...+.-...+.+..|... ....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4456777777777654321111111112211 1112223456789999999999987753111121 223333333
Q ss_pred HHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCc--ccccccccccccccccccccCChHHHHHHHHHHHHc
Q 004610 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (742)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~--~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~ 313 (742)
+. ..|+.++|...+... .+.....|-.. ..+++.+-.. +...|++++|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 44 678999998888411 01111111111 1122223233 66789999999988876542
Q ss_pred CC---CCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC--CCCC--C
Q 004610 314 GQ---FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM--N 386 (742)
Q Consensus 314 G~---~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--g~~p--d 386 (742)
.- .++... ....+.. +-..+...|++++|.+.+.+.... ...+ .
T Consensus 561 ~~~~~~~~~~~----------------------------~~~~~~~-la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 561 IEEQHLEQLPM----------------------------HEFLLRI-RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHhccccccH----------------------------HHHHHHH-HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 10 000000 1111222 334556679999999998876442 1112 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCChhhH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---
Q 004610 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPRLRSY--GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--- 457 (742)
Q Consensus 387 ~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~Pd~~ty--~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--- 457 (742)
...+..+...+...|+.++|.+.+.+.... +..+..... ...+..+...|+.+.|.+++............
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 344555667788999999999999887542 111111010 11224455689999999998775542211111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..+..+-.++...|+.++|..++.+....
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11345666778899999999999887653
No 122
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.99 E-value=2.6 Score=44.62 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=69.9
Q ss_pred HHHhh-cCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCChh-hHHHH
Q 004610 361 EDAKK-YAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-----NPRLR-SYGPA 428 (742)
Q Consensus 361 ~~~k~-g~~~~A~~lf~~M~~----~g~~p-d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~-----~Pd~~-ty~~l 428 (742)
.|-.. |+++.|++.|++-.. .|-.- -..++..+...+.+.|++++|.++|++....-+ ++++. .|-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 677777777765432 23111 124566777888899999999999998876533 22332 22334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 004610 429 LSVFCNNGDVDKACSVEEHMLEH--GVYPE--EPELEALLRVSVEAG---KGDRVYYLLHKL 483 (742)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~--gv~pd--~~ty~~Li~~~~~~g---~~~~A~~ll~~M 483 (742)
+-++...||...|...+++.... ++..+ -.....||.++ +.| .+.+|..-|+.+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHccc
Confidence 44566678999999999988754 33222 33455666665 334 345555555554
No 123
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.93 E-value=0.11 Score=44.03 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHH
Q 004610 366 YAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACS 443 (742)
Q Consensus 366 g~~~~A~~lf~~M~~~g~-~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~ 443 (742)
|+++.|+.+|+++.+..- .|+...+-.+..++.+.|+.++|..+++. . ...|+. ...-.+-.+|.+.|+.++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 456666666666655432 11233333356666666666666666655 1 111222 111222344555666666666
Q ss_pred HHHH
Q 004610 444 VEEH 447 (742)
Q Consensus 444 l~~~ 447 (742)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6553
No 124
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.75 E-value=0.66 Score=53.31 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=68.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
-|..|.++|+++.|.++-.+. .|-......|-+-..-+-+.|++.+|.+++-.+ | .|+ ..|.+|-+.|.
T Consensus 797 ai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~ 865 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGL 865 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCc
Confidence 566777777777777665443 333344455555555666677777777666432 1 243 46777777777
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
.+...++.+.-. |+ ..|--.+-.-|-..|++..|.+-|-+-.+
T Consensus 866 ~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 866 DDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred chHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 777666665432 22 23444555667778888888887766543
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.66 E-value=2.2 Score=41.41 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=41.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCN 434 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~ 434 (742)
+-..|...|++++|.+.|++.....-.++ ...|..+...+.+.|+.++|...+.+.... .| +...+..+-..+..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence 44445556666666666666654322221 245566666666666666666666655543 22 23333334444444
Q ss_pred cCCH
Q 004610 435 NGDV 438 (742)
Q Consensus 435 ~g~~ 438 (742)
.|+.
T Consensus 119 ~g~~ 122 (172)
T PRK02603 119 RGEK 122 (172)
T ss_pred cCCh
Confidence 4443
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.63 E-value=1.9 Score=48.36 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCChhhH-HHHH
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPAL 429 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~Li~~~~~~g~~~~A~~l~~~-M~~~g~~Pd~~ty-~~lI 429 (742)
+|-. .|+.--|..-++.|..+|.+.++.+..+ ++..++++|.-+|. ++.+-|+++|+- |+..| |.-.| ..-+
T Consensus 368 v~~~-~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~---d~p~yv~~Yl 442 (656)
T KOG1914|consen 368 VYCQ-YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG---DSPEYVLKYL 442 (656)
T ss_pred ehhH-HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC---CChHHHHHHH
Confidence 3444 6677777778888899999998888777 88888888888875 566778888875 33333 33333 4467
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 430 SVFCNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+-+..-++-..|..+|++.+..++.|| ...|..+|+-=+.-|++..+.++-+++...
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 777788888888999999888866665 467899998888889998888888777654
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.52 E-value=2.4 Score=50.60 Aligned_cols=123 Identities=10% Similarity=-0.041 Sum_probs=75.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALSVFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty-~~lI~~~~~~ 435 (742)
|-......|..++|.++++...+. .| +......+...+.+.+++++|+...++.... .|+..+. ..+=.++.+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 445555667777777777766653 33 3455566666777777777777777665544 2443333 3333445556
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 436 GDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
|+.++|.++|++.... .|+ ..++..+=.++-..|+.++|...|++-.+.
T Consensus 168 g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 168 GQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred cchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777662 233 556666666666777777777777666543
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.50 E-value=1.3 Score=48.66 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=75.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (742)
..+...|++++|+++|++..... +-+...|..+..+|.+.|++++|+..+++..... ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34557789999999998887754 3466778888888889999999999988876652 224566777777888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 004610 440 KACSVEEHMLEHGVYPEEPELEALL 464 (742)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li 464 (742)
+|...|++.++. .|+......++
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999888764 46655555444
No 129
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.47 E-value=3.4 Score=40.06 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 004610 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEA 462 (742)
Q Consensus 386 d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~ 462 (742)
....|..+-..+...|++++|...|++..+..-.|. ...|..+-..+.+.|+.++|...+++.... .| +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 345677888888899999999999999876543332 357777888899999999999999998874 34 3455566
Q ss_pred HHHHHHHcCC--------------HHHHHHHHHHHHHccCCCChhHHHHHHHHh
Q 004610 463 LLRVSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502 (742)
Q Consensus 463 Li~~~~~~g~--------------~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~ 502 (742)
+-..|...|+ +++|.+++.+... ..|+.+..+..|.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~ 161 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWL 161 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHH
Confidence 6666777666 3455555555443 3455444444443
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.40 E-value=0.18 Score=42.58 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 004610 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (742)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~ 477 (742)
.|+++.|+.+++++.+..- .|+...+-.+-.+|.+.|+.++|..+++. .. ..|.. ...-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999987643 22444444478899999999999999988 32 22333 33334567788999999999
Q ss_pred HHHHH
Q 004610 478 YLLHK 482 (742)
Q Consensus 478 ~ll~~ 482 (742)
++|.+
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.31 E-value=3.3 Score=49.51 Aligned_cols=132 Identities=13% Similarity=0.058 Sum_probs=98.7
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
..+.|+.++|..+++...+. .||-.. .-..+...+.+.+++++|..
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~--------------------------------a~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSE--------------------------------AFILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHH--------------------------------HHHHHHHHHHHhccHHHHHH
Confidence 55778999999999877663 344333 33447788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
..++..... +-+....+.+-.++.+.|+.++|..+|++....+ |+ ..++..+=.++-+.|+.++|...|+...+.-
T Consensus 142 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 142 EIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999988764 3355667778888889999999999999988732 44 6677777778888999999999999887642
Q ss_pred CCCCHHHHHHH
Q 004610 453 VYPEEPELEAL 463 (742)
Q Consensus 453 v~pd~~ty~~L 463 (742)
.|...-|+-+
T Consensus 219 -~~~~~~~~~~ 228 (694)
T PRK15179 219 -GDGARKLTRR 228 (694)
T ss_pred -CcchHHHHHH
Confidence 2333444433
No 132
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.16 E-value=0.31 Score=39.02 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=7.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 004610 392 AVGRMAMSMGDGDMAFDMVKR 412 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~ 412 (742)
.+..+|.+.|++++|..+++.
T Consensus 30 ~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 30 LLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHHHHHHTT-HHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 333333333333333333333
No 133
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.94 E-value=2.4 Score=46.59 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=107.6
Q ss_pred HhhHHHHHHHHHhhcCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH-HHHH
Q 004610 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPAL 429 (742)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty-~~lI 429 (742)
.+|.. .|+.-.+..-++.|..+|-+.++.| +.+++..|+++|.-+|. |+..-|..+|+-=... -||.-.| +-.+
T Consensus 398 ~v~C~-~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCV-HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hHHHH-HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34445 6777778888999999999999998 67999999999998875 6777899999752222 2555444 3466
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHH
Q 004610 430 SVFCNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~ 497 (742)
.-+.+-++-+.|..+|+.-+.+ +.-+ ...|..+|+-=..-|++..|..+=++|... .+..++..+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 7788889999999999954432 1222 568999999999999999999999999888 777776665
No 134
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.85 E-value=2.5 Score=48.32 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP--------- 458 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~--------- 458 (742)
.+.-.+..-+-+...+..|-++|..|-.. -.+++.....+++.+|+.+-+...+- .||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 34444444455566677788888877543 35677777888888888887765532 33332
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 459 --ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 459 --ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
-|.---.+|-++|+..||..+++.+..+
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2344456778888888888888888766
No 135
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.82 E-value=0.33 Score=38.83 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=51.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
.+.|++++|.++|+.+.... .-+...+-.+..+|.+.|++++|..+++.+... .|+...|..|+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHHh
Confidence 57899999999999987662 226666777999999999999999999999876 477677766653
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=92.72 E-value=3.4 Score=46.03 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=90.7
Q ss_pred HHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHH
Q 004610 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~ 440 (742)
+-..|++++|+..++.+... .+-|..-+....+.+.+.++.++|.+.++.+... .|+. ...-.+=.+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34678888999999887765 2345566666777888899999999999888755 4553 233335567888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
|..++++-.... .-|...|..|-++|...|+..+|..-..++-..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 998888877553 557888999999999999988888777666443
No 137
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=5.6 Score=41.63 Aligned_cols=276 Identities=11% Similarity=0.007 Sum_probs=150.8
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSS 238 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL-~~~~~ 238 (742)
+.+..+..+|.+++..-.++.. + +....+.|=.+|-+..++..|-..|+.+-.. .|-..-|..-- ..+-
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p-~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY- 89 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSP-R------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY- 89 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH-
Confidence 3356677888888877644322 1 3366777778888889999999999888643 34433332110 0111
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHHHHHHHHHHcCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~P 317 (742)
+++...+|+.+.. .|.+...+. .++-.-+.|.. +.+++-.+..+.++....|
T Consensus 90 ---------~A~i~ADALrV~~-------~~~D~~~L~~~~lqLqaAIkY--------se~Dl~g~rsLveQlp~en--- 142 (459)
T KOG4340|consen 90 ---------KACIYADALRVAF-------LLLDNPALHSRVLQLQAAIKY--------SEGDLPGSRSLVEQLPSEN--- 142 (459)
T ss_pred ---------HhcccHHHHHHHH-------HhcCCHHHHHHHHHHHHHHhc--------ccccCcchHHHHHhccCCC---
Confidence 4555777777764 222211111 11111111111 3344444444444332211
Q ss_pred CccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 004610 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRM 396 (742)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-~g~~pd~~tyn~Li~~ 396 (742)
+- | +-++ .-....+.|+.++|.+-|+...+ .|..| ...||.-+.
T Consensus 143 ---~A---------------------------d--~~in-~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa- 187 (459)
T KOG4340|consen 143 ---EA---------------------------D--GQIN-LGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA- 187 (459)
T ss_pred ---cc---------------------------c--hhcc-chheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-
Confidence 00 0 0011 11223478999999999988766 46655 567886654
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC-------------CChhh--------HHHHHHHH-------HHcCCHHHHHHHHHHH
Q 004610 397 AMSMGDGDMAFDMVKRMKSLGIN-------------PRLRS--------YGPALSVF-------CNNGDVDKACSVEEHM 448 (742)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~-------------Pd~~t--------y~~lI~~~-------~~~g~~~~A~~l~~~M 448 (742)
..+.|+.+.|++...++.++|++ ||+++ -+.++.++ .+.|+.+.|.+-+-+|
T Consensus 188 Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 188 HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 45678899999999999888764 34322 12344433 3568888999888888
Q ss_pred HHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhH-HHHHHHHhhchHHHH
Q 004610 449 LEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAAR 509 (742)
Q Consensus 449 ~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~~~~~ 509 (742)
.-+ .-..|.+|..-+--.- -.|++.+..+=++-+.... .+.++| .+++.-+|+..-..-
T Consensus 268 PPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred CCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhH
Confidence 633 3456777765332211 1233333333333333321 455555 466777888765433
No 138
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.64 E-value=0.54 Score=44.19 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=37.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCChhh
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS 424 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~-----~g~~Pd~~t 424 (742)
++..+...|++++|.++...+.... +-|+..|-.+|.+|...|+..+|.+.|+.+.. .|+.|+..+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4555666677777777776666543 44666777777777777777777777666532 266665544
No 139
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.63 E-value=0.31 Score=50.22 Aligned_cols=86 Identities=10% Similarity=-0.003 Sum_probs=67.8
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g----------------~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (742)
.+.++-...-++.|++.|+.-|..+|+.||+.+=|.. +-+-+.+++++|...|+.||..+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 4567777777889999999999999999999765432 223588999999999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHH
Q 004610 429 LSVFCNNGD-VDKACSVEEHMLE 450 (742)
Q Consensus 429 I~~~~~~g~-~~~A~~l~~~M~~ 450 (742)
|++|.+.+- +.+.+++.--|.+
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHhccccccHHHHHHHHHhhhh
Confidence 999999875 3444555544543
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=92.60 E-value=0.81 Score=43.09 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=66.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~--~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (742)
+-..+...|++++|.+.|+........|+. ...-.|...+...|++++|+..++....... ....+...=+.|.+.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHC
Confidence 447788899999999999999987633322 2444567788899999999999977443333 334455566678999
Q ss_pred CCHHHHHHHHHH
Q 004610 436 GDVDKACSVEEH 447 (742)
Q Consensus 436 g~~~~A~~l~~~ 447 (742)
|+.++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 999999999975
No 141
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.59 E-value=0.64 Score=49.22 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (742)
.+|..+|+..-+.+..+.|..+|++..+.+ +..+++...++|. |...++.+.|..+|+...+. +..+..-|..-|+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578999999999999999999999998654 5677777777776 33457788899999999876 45677888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 004610 467 SVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (742)
+.+.|+.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 99999999999999998766
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.53 E-value=2.5 Score=46.42 Aligned_cols=97 Identities=12% Similarity=0.013 Sum_probs=77.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004610 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (742)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (742)
..+...|++++|+++|++..+.. .-+...|..+-.+|.+.|++++|...+++.+... ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 45668899999999999988653 2345667777788999999999999999998764 235677888888999999999
Q ss_pred HHHHHHHHHHHccCCCChhHH
Q 004610 475 RVYYLLHKLRTSVRKVSPSTA 495 (742)
Q Consensus 475 ~A~~ll~~M~~~~~~~~p~t~ 495 (742)
+|...|++.... .+.....
T Consensus 88 eA~~~~~~al~l--~P~~~~~ 106 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRF 106 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHH
Confidence 999999998876 4443333
No 143
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.52 E-value=0.68 Score=43.50 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE 459 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~t 459 (742)
...++..+...|++++|..+...+... -.-|...|-.+|.+|...|+..+|.++|+.+.. -|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444555556666666665555443 123455555566666666666666555555432 255555443
No 144
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.51 E-value=2.2 Score=41.07 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=30.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~ 415 (742)
+...+...|++++|...|++.....-.| ...+|..+-..+...|+.++|++.++....
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445566666666666554332111 123555555566666666666666655443
No 145
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.26 E-value=27 Score=40.57 Aligned_cols=188 Identities=10% Similarity=0.074 Sum_probs=117.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-y~~lI~~~~~~g 436 (742)
-+..-..+.++++|..+|.+-+.. .|.+-.|.--++..--.+..++|.+++++..+. -|+..- |-.+=..+-+.+
T Consensus 624 avKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 556667778888888888887664 467777776666666778888888888776544 355433 222223344556
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh-HH-HHHHHHhhchHHHHhccc
Q 004610 437 DVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TA-DVIAKWFNSKEAARLGKK 513 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~-t~-~~I~~~~~~~~~~~a~~~ 513 (742)
+++.|.+.|..=. ...|+.. .|-.|-+.=-+.|.+-+|..+|++-+-+ .|... .| ..|..-.+.|....+.
T Consensus 700 ~ie~aR~aY~~G~--k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~-- 773 (913)
T KOG0495|consen 700 NIEMAREAYLQGT--KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAE-- 773 (913)
T ss_pred HHHHHHHHHHhcc--ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHH--
Confidence 7777776664322 2345544 4555555556788999999999988766 44433 44 3366666666544443
Q ss_pred cchhHHHHHHh---hhcCCCccccccCCCCceEEEEeeecCCCccccccc
Q 004610 514 KWNESLIKDTM---ENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGE 560 (742)
Q Consensus 514 ~w~~~~v~ea~---~~~g~~~~~m~~~g~~p~~v~~~~v~~~G~C~~c~~ 560 (742)
.++..++ .+.|-+|-+.+|+--.|..-+- .++.--.|..-..
T Consensus 774 ----~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~dph 818 (913)
T KOG0495|consen 774 ----LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEHDPH 818 (913)
T ss_pred ----HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccCCch
Confidence 3344444 4667788888888777776443 3433345544433
No 146
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.23 E-value=2.3 Score=49.85 Aligned_cols=236 Identities=16% Similarity=0.131 Sum_probs=120.8
Q ss_pred hcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC--------CCHHHHHHHH
Q 004610 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR-EGIK--------LGQYHYNVLL 233 (742)
Q Consensus 163 ~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~-~Gi~--------pd~~tyn~LL 233 (742)
.|+.+.|++-...+ ++. ..|.-|-+.|.+..+++-|.-.+..|.. +|.+ |+.. .+=.
T Consensus 741 iG~MD~AfksI~~I------kS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--eakv 806 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI------KSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--EAKV 806 (1416)
T ss_pred eccHHHHHHHHHHH------hhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--hhHH
Confidence 46677777777776 344 8999999999999999999988888873 2321 1100 0001
Q ss_pred HHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHc
Q 004610 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (742)
Q Consensus 234 ~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~ 313 (742)
..++ -..|.+++|..+|. .-.+ |..|=+- |-..|.+++|.++-+.-.+.
T Consensus 807 AvLA---------ieLgMlEeA~~lYr-------~ckR---------~DLlNKl------yQs~g~w~eA~eiAE~~DRi 855 (1416)
T KOG3617|consen 807 AVLA---------IELGMLEEALILYR-------QCKR---------YDLLNKL------YQSQGMWSEAFEIAETKDRI 855 (1416)
T ss_pred HHHH---------HHHhhHHHHHHHHH-------HHHH---------HHHHHHH------HHhcccHHHHHHHHhhccce
Confidence 1111 14577888888874 1111 1111111 66678888888776543332
Q ss_pred CCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCC--------CCC
Q 004610 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--------VPM 385 (742)
Q Consensus 314 G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g--------~~p 385 (742)
.+.-.-+-|. .-+++..+ . ..-|..|-|.|. -|+++++.+.+.- -.-
T Consensus 856 HLr~Tyy~yA--~~Lear~D--------------------i-~~AleyyEK~~~--hafev~rmL~e~p~~~e~Yv~~~~ 910 (1416)
T KOG3617|consen 856 HLRNTYYNYA--KYLEARRD--------------------I-EAALEYYEKAGV--HAFEVFRMLKEYPKQIEQYVRRKR 910 (1416)
T ss_pred ehhhhHHHHH--HHHHhhcc--------------------H-HHHHHHHHhcCC--hHHHHHHHHHhChHHHHHHHHhcc
Confidence 2222222221 11111100 0 012333333332 1333333332210 012
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 386 d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
|...|.-.-.-+-..|+.|.|+.++..-+. |-+++...|-.|++++|-++-++- -|....-.|-+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR 975 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLAR 975 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHH
Confidence 333333333344456777777776665432 334555566667777776666542 24444445556
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 004610 466 VSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M 483 (742)
.|-..|++.+|...|.+-
T Consensus 976 ~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 666666666666665543
No 147
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=91.70 E-value=5 Score=46.78 Aligned_cols=211 Identities=11% Similarity=0.096 Sum_probs=135.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCc
Q 004610 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN 277 (742)
Q Consensus 198 I~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~ 277 (742)
-..+...|-...|+.+|++. ..|--+|..|+ ..|..++|..+.. ++..+. .+
T Consensus 405 aell~slGitksAl~I~Erl---------emw~~vi~CY~----------~lg~~~kaeei~~------q~lek~---~d 456 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL---------EMWDPVILCYL----------LLGQHGKAEEINR------QELEKD---PD 456 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHH----------HhcccchHHHHHH------HHhcCC---Cc
Confidence 35566667777888877765 34555677777 5566666666653 233311 12
Q ss_pred ccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHH
Q 004610 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (742)
Q Consensus 278 ~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (742)
..-|..+-+. ..+..-+++|.++++..-.+- .- .++.
T Consensus 457 ~~lyc~LGDv------~~d~s~yEkawElsn~~sarA-----~r-------------------------------~~~~- 493 (777)
T KOG1128|consen 457 PRLYCLLGDV------LHDPSLYEKAWELSNYISARA-----QR-------------------------------SLAL- 493 (777)
T ss_pred chhHHHhhhh------ccChHHHHHHHHHhhhhhHHH-----HH-------------------------------hhcc-
Confidence 2334444444 334444466666665432210 00 0011
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g 436 (742)
.....++++++.+.|+.-.+-. +.-..||=.+=-+..+.+++..|.+-|..... ..|| ...||.+=.+|.+.|
T Consensus 494 ---~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 494 ---LILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLK 567 (777)
T ss_pred ---ccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHh
Confidence 1123578888888887543321 22334555555555678899999999987653 3455 678999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+-.+|+..+.+..+.. .-+...|.--+-...+.|.+++|.+.+++|...
T Consensus 568 ~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999999999887 555566666666779999999999999887653
No 148
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.32 E-value=27 Score=42.28 Aligned_cols=220 Identities=10% Similarity=-0.001 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccc--ccc
Q 004610 206 DVMGAIRLYDKAQR-EGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG--QLD 282 (742)
Q Consensus 206 ~~~~A~~lf~~M~~-~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~v--tyn 282 (742)
.+..|+.++...-. .+- |++..|.|-+-+. -.|+...+..+.. .+.......... +|-
T Consensus 251 s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fy----------fK~dy~~v~~la~-------~ai~~t~~~~~~aes~Y 311 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNE--NPVALNHLANHFY----------FKKDYERVWHLAE-------HAIKNTENKSIKAESFY 311 (1018)
T ss_pred HHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHh----------hcccHHHHHHHHH-------HHHHhhhhhHHHHHHHH
Confidence 34555555555442 222 4455566666555 5566666666653 222210000011 122
Q ss_pred cccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHH
Q 004610 283 YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362 (742)
Q Consensus 283 ~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~ 362 (742)
-+=.+ +-..|++++|...|- ...+..||.+++. +-. |-..|
T Consensus 312 ~~gRs------~Ha~Gd~ekA~~yY~--~s~k~~~d~~~l~------------------------------~~G-lgQm~ 352 (1018)
T KOG2002|consen 312 QLGRS------YHAQGDFEKAFKYYM--ESLKADNDNFVLP------------------------------LVG-LGQMY 352 (1018)
T ss_pred HHHHH------HHhhccHHHHHHHHH--HHHccCCCCcccc------------------------------ccc-hhHHH
Confidence 23334 778899999998884 4455566765554 112 66788
Q ss_pred HhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 004610 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (742)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g----~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~ 438 (742)
.+.|+++.|...|+...+.. +-+..|.-+|=..|+..+ ..+.|..++..-.+. ..-|...|-.+= -+...++.
T Consensus 353 i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~la-ql~e~~d~ 429 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELA-QLLEQTDP 429 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHH-HHHHhcCh
Confidence 89999999999999887753 223455555555555554 345555555554433 123344444333 33345666
Q ss_pred HHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 439 DKACSVEE----HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 439 ~~A~~l~~----~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..++.+|. .|..++-.+-....|.+-......|.+.+|...|..-...
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 66666664 3455666677888898888889999999999988776554
No 149
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.12 E-value=35 Score=39.61 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.-|++|-+-|.+.|+++.|..+|++.... ..++.-|+.+.++|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 67999999999999999999999998754 3467788888888883
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=91.05 E-value=4.1 Score=39.24 Aligned_cols=96 Identities=19% Similarity=0.104 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004610 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (742)
Q Consensus 386 d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (742)
-...|..+...+...|++++|+..|++.....-.| ...+|..+=..+...|+.++|...++...... .....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34567777888888999999999999887553222 23477777788899999999999999988652 2234455666
Q ss_pred HHHHH-------HcCCHHHHHHHHHH
Q 004610 464 LRVSV-------EAGKGDRVYYLLHK 482 (742)
Q Consensus 464 i~~~~-------~~g~~~~A~~ll~~ 482 (742)
...+. +.|++++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 77787766655543
No 151
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.00 E-value=2.2 Score=47.88 Aligned_cols=134 Identities=10% Similarity=0.002 Sum_probs=100.5
Q ss_pred cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHH
Q 004610 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (742)
Q Consensus 277 ~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (742)
...+|-.+|+. .-+..-+..|..+|.+.++.+..+ | ++.++++
T Consensus 365 ~tLv~~~~mn~------irR~eGlkaaR~iF~kaR~~~r~~----h---------------------------hVfVa~A 407 (656)
T KOG1914|consen 365 LTLVYCQYMNF------IRRAEGLKAARKIFKKAREDKRTR----H---------------------------HVFVAAA 407 (656)
T ss_pred CceehhHHHHH------HHHhhhHHHHHHHHHHHhhccCCc----c---------------------------hhhHHHH
Confidence 55667666666 666666777888888777776555 0 3334445
Q ss_pred HHHHHHHhhcCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHH
Q 004610 357 IRLSEDAKKYAFQRGFEIYEK-MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFC 433 (742)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~-M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~ 433 (742)
+|..||. ++.+-|.++|+- |+..|- +..--...++-+...++-..|..+|+.....++.|| ...|..+|.-=.
T Consensus 408 -~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 408 -LMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred -HHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 8888875 456789999985 444442 233446778888899999999999999998877666 489999999999
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 004610 434 NNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~ 451 (742)
.-|++..+.++-+++...
T Consensus 484 ~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hcccHHHHHHHHHHHHHh
Confidence 999999999999888653
No 152
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=90.97 E-value=37 Score=39.55 Aligned_cols=119 Identities=11% Similarity=0.010 Sum_probs=73.4
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~ 443 (742)
..|..+.-..+|++.... ++-.++.|-...+-+-..|++..|..++.+..+..- -+...|-..+.--..+.+.+.|..
T Consensus 562 ~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHH
Confidence 345566666666666553 344556666666666667777777777766655522 145566666666667777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+|..... ..|+...|.--+...--.+..++|.+++++-.+.
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 7766554 3456666655555555566677777777665554
No 153
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.70 E-value=43 Score=40.90 Aligned_cols=232 Identities=9% Similarity=0.047 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhh
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~--Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em 269 (742)
..-+..+.++..++-+.+-++++++..-. -+.-+.-.-|.||-.-.++ . -.+..+... -
T Consensus 985 e~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika----------d-~trVm~YI~--------r 1045 (1666)
T KOG0985|consen 985 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA----------D-RTRVMEYIN--------R 1045 (1666)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc----------C-hHHHHHHHH--------H
Confidence 44566778888899999999999988732 2223333445555444422 1 122333321 1
Q ss_pred cccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc--cccCCCchhhhhcCC
Q 004610 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS--NLERGPDDQSRKKDW 347 (742)
Q Consensus 270 ~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~--~~a~~~~~~m~~~g~ 347 (742)
.++++.++...- ...++.+++|..+|++..-.+ ...+ .||+--. +.|.. |.+-..
T Consensus 1046 LdnyDa~~ia~i------------ai~~~LyEEAF~ifkkf~~n~-----~A~~--VLie~i~~ldRA~e-fAe~~n--- 1102 (1666)
T KOG0985|consen 1046 LDNYDAPDIAEI------------AIENQLYEEAFAIFKKFDMNV-----SAIQ--VLIENIGSLDRAYE-FAERCN--- 1102 (1666)
T ss_pred hccCCchhHHHH------------HhhhhHHHHHHHHHHHhcccH-----HHHH--HHHHHhhhHHHHHH-HHHhhC---
Confidence 111111111100 445567788888887643221 1111 2222111 01100 000000
Q ss_pred CcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004610 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427 (742)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (742)
....|+. +-.+-.+.|.+.+|++-|-+. -|...|.-+|+.+.+.|.+++-.+.+...++..-.|.+. +.
T Consensus 1103 --~p~vWsq-lakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~e 1171 (1666)
T KOG0985|consen 1103 --EPAVWSQ-LAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SE 1171 (1666)
T ss_pred --ChHHHHH-HHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HH
Confidence 1234666 777777888888888776542 366789999999999999999888887777776666654 57
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
||-+|++.+++.+-.++. .-||......+=+-|...|.++.|.-++...
T Consensus 1172 Li~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 899999999887655554 2477777777777777777777776666555
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.56 E-value=2.7 Score=45.28 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=72.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
.|.-+...|+...|.++-.+.+ .||..-|-..|++++..++|++-.++-+. .- ..+-|-+.+.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 4555667777777776655542 47788888888888888888876665432 12 34778888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (742)
..+|..+... .++..-+..|.+.|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888877766 2235566777888888877665433
No 155
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=38 Score=38.95 Aligned_cols=137 Identities=12% Similarity=0.185 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHHcCCH
Q 004610 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGDV 438 (742)
Q Consensus 367 ~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~--------~M~~~g~~Pd~~ty~~lI~~~~~~g~~ 438 (742)
....|.+++...-...-.-..+.--.++......|+++.|.+++. .+.+.+..|-.+. ++...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCC
Confidence 466777777766554322224556667778889999999999999 6666677776654 456667777877
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHccCCCChh-HHHHHHHHhhchH
Q 004610 439 DKACSVEEHMLEH--GVYPEEPELEALL----RVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKE 506 (742)
Q Consensus 439 ~~A~~l~~~M~~~--gv~pd~~ty~~Li----~~~~~~g~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~~~~ 506 (742)
+.|-.++.+.+.. .-.+.......++ ..-.+.|.-++|..+++++.+.. +.+.+ ....+.+++.-..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCH
Confidence 7788888776542 1122223333333 33467899999999999998841 22222 3444777766543
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=90.28 E-value=8.3 Score=35.20 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=63.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHHHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR------LRSYGPALSV 431 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd------~~ty~~lI~~ 431 (742)
..+-..|+.++|..+|++-...|.... ...+-.+-..+-..|++++|..+|++..... |+ ...+- -.+
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~--Al~ 84 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFL--ALA 84 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHH--HHH
Confidence 345567788888888888877776544 2344555666777888888888888766541 33 22221 224
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004610 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (742)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (742)
+...|+.++|.+.+-.... ++...|.--|..|..
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 5667888888877765542 344466666655543
No 157
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.09 E-value=10 Score=43.74 Aligned_cols=269 Identities=10% Similarity=-0.004 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhc
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~G-i~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~ 270 (742)
..|....-++--.|+...|..+.++..+.- -.|+...|.-....+-+... -.+.|..+.|.+.+. +.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i----~~E~g~~q~ale~L~--------~~ 211 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI----LIEAGSLQKALEHLL--------DN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH----HHHcccHHHHHHHHH--------hh
Confidence 567777788888899999999999998654 36777777765554432110 016677777777763 11
Q ss_pred ccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccc------hh-------HHhhccc-----
Q 004610 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------NS-------QLLDGRS----- 332 (742)
Q Consensus 271 ~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~------~~-------~li~~~~----- 332 (742)
+. .+.|.+.|-- +.+ -.+-+.+++++|..++..+..+ -||-+-|. .+ .+-..|.
T Consensus 212 e~-~i~Dkla~~e-~ka----~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 212 EK-QIVDKLAFEE-TKA----DLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred hh-HHHHHHHHhh-hHH----HHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 11 1111111100 000 0166778899999999888876 47777776 11 0001111
Q ss_pred ---------------------cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHH----HHHHHHHHHhCCC----
Q 004610 333 ---------------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEV---- 383 (742)
Q Consensus 333 ---------------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~g~---- 383 (742)
.....++..+.++|+.+--.. +.+-|-.....+- +..+...|...|.
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d----l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD----LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh----hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 001113445556666543222 3233322221111 1222222222221
Q ss_pred ------CCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004610 384 ------PMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (742)
Q Consensus 384 ------~pd~~tyn--~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (742)
+|....|+ -++.-+-+.|+++.|...++.-... .|+. .-|-.=-..++.+|++++|...+++-.+.. .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 45555554 4666777899999999999976543 4654 233333366788999999999999987654 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 004610 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (742)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~ 487 (742)
||...-+--..-..++.+.++|.++.....+..
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 555544344445568899999999999988873
No 158
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=0.13 Score=56.72 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=73.8
Q ss_pred CCcccccccccccccCCC--CcCcccHHHHHHHHHhhCCCCCccEEEeccccccCCCCCChhhHHHHHHHHhcCeeeeCC
Q 004610 603 GPFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATP 680 (742)
Q Consensus 603 ~pyD~viDG~NVg~y~~~--~~~~~~i~~vv~~l~~~~~~~~~~lvvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (742)
.-+-++|||-|||+-..| -|++.-+.-.++++.++.. +..-+.+-..|. + +..|.+ ++.++.+...+-+||
T Consensus 11 ~~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~~~~-rd~tv~~~~~r~-e---~~~p~~--~l~~l~~~~~~~ftp 83 (443)
T KOG3777|consen 11 YLRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQRGH-RDITVLVPSWRK-E---ATRPDA--ILRELEEKKILVFTP 83 (443)
T ss_pred cccCceeeccchhhcccchhheecccceeehhhhhhhcc-cCcchhchhhhh-c---CCchHH--HHHHHHhccccccCC
Confidence 346789999999966554 5777778878888877322 222222323221 1 123333 778888888888888
Q ss_pred CC--------CCCCccCCcccchhhhhhhhhcCCceEEeCcccccccccc
Q 004610 681 TG--------SNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQL 722 (742)
Q Consensus 681 ~~--------~~dd~~~~~~~~~~~~l~a~~~~~~~~vs~d~~rdh~~~l 722 (742)
.. +.||+ |..--+...+.+||+||-.||...+.
T Consensus 84 ~~~~~~~r~~c~~~r---------f~~~~~~~s~~~~~~~dn~rd~~le~ 124 (443)
T KOG3777|consen 84 DRSIQGSRVICYDRR---------FSASLARESDGIVSLNDNYRDLILES 124 (443)
T ss_pred Chhhccceeeeehhh---------hHhhhhccccceecCCchHHHHHhhc
Confidence 76 78999 99999999999999999999976643
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.90 E-value=15 Score=37.97 Aligned_cols=160 Identities=8% Similarity=-0.021 Sum_probs=96.9
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
+.+.|++++|...|++.... -|+.. +. . +. . -.+...|-+.++.++|..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~-~a----~---------------------~a-~--l~la~ayy~~~~y~~A~~ 90 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGP-YS----Q---------------------QV-Q--LDLIYAYYKNADLPLAQA 90 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCh-HH----H---------------------HH-H--HHHHHHHHhcCCHHHHHH
Confidence 55689999999999998774 33331 11 0 00 0 115678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH--c---------------CC---HHHHHHHHHHHHHC----CCCCChhhHHH--
Q 004610 374 IYEKMCLDEVPMNEASLTAVGRMAMS--M---------------GD---GDMAFDMVKRMKSL----GINPRLRSYGP-- 427 (742)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~Li~~~~~--~---------------g~---~~~A~~l~~~M~~~----g~~Pd~~ty~~-- 427 (742)
.|++..+.--.-..+-|.-.+.+.+. . .+ ..+|++.|+++.+. ...|+....-.
T Consensus 91 ~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 91 AIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 99998876433233566666666552 1 12 23566666666544 11122221111
Q ss_pred ----------HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 428 ----------ALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 428 ----------lI~~~~~~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
+-.-|.+.|....|..=++.+++. +........-.|+.+|.+.|..++|......+.
T Consensus 171 ~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 171 KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 333466677777777777777764 334445556677777777777777777665553
No 160
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.90 E-value=8.6 Score=35.66 Aligned_cols=119 Identities=8% Similarity=-0.011 Sum_probs=85.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+|..+...+.......+++.+...+ ..+...+|.+|..|++... ....+.+.. .++.+...-++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 7888888899999999999998887 3788899999999998743 444555542 2455556668998989999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHccCCCChhHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~~~~~~p~t~~~I~ 499 (742)
++++..++..+.. |.-.++.+... ++.+.|.+.+.+- -.|+.|..+.
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~ 132 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVL 132 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHH
Confidence 9999999987731 22233334444 7888888887652 2455665533
No 161
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.85 E-value=8.3 Score=42.88 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=89.3
Q ss_pred HhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 004610 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (742)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (742)
-..|++..|.++|+.-.+ ..|++..|.+.|+-=.+...++.|..+++...-. .|++.+|---..-=-++|++..|.
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 356788999999988665 4799999999999999999999999999987644 499998888777777899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHc
Q 004610 443 SVEEHMLEHGVYPEEPELEALLRVS----VEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~----~~~g~~~~A~~ll~~M~~~ 486 (742)
.+|+...+. .-|...-..|+.++ .++..+++|.-++.--.+.
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999887653 12333334444444 3456677777777766655
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=89.79 E-value=8.7 Score=40.24 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELE 461 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd~~ty~ 461 (742)
..|...+..+.+.|++++|...|+.+.+.- |+. ..+--+-..|...|+.++|...|+.+.+.- -......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 445555555555677777777777766541 332 233345556667777777777777776531 011122333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
.+...+...|+.++|..+|+++.+. .|...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 3444556778888888888877776 55443
No 163
>PLN02789 farnesyltranstransferase
Probab=89.78 E-value=33 Score=37.08 Aligned_cols=210 Identities=11% Similarity=0.013 Sum_probs=120.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccccCCcccCCCC-CHHHHHHHhhhhcccchhhcccCCC
Q 004610 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDM 275 (742)
Q Consensus 198 I~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~LL~~~~~~~~~~~~~~k~G-~~~~A~~~f~~~~~~s~em~~~~g~ 275 (742)
-..+...++.++|+.+++++++. .|+-. .|+..=..+. +.| ..+++++.++ ++... ..
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i~~-np 103 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVAED-NP 103 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHHHH-CC
Confidence 33355667889999999998864 34332 3332222233 333 4567777764 33322 22
Q ss_pred CcccccccccccccccccccccCC--hHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHh
Q 004610 276 DNNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (742)
Q Consensus 276 ~~~vtyn~lI~~~~~~~~~~~~g~--~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~t 353 (742)
++.-.|+..-.. +.+.|. .+++..++++|.+. |.- |..+
T Consensus 104 knyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~----dpk-----------------------------Ny~A 144 (320)
T PLN02789 104 KNYQIWHHRRWL------AEKLGPDAANKELEFTRKILSL----DAK-----------------------------NYHA 144 (320)
T ss_pred cchHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHh----Ccc-----------------------------cHHH
Confidence 233334422111 222232 24556666666543 222 2234
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHCCCCCChhhHH
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~---g~~----~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
|+. .--.+.+.|++++|++.++++.+.+. -|...|+-.--.+.+. |.. +++++...++... -.-|...|+
T Consensus 145 W~~-R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~ 221 (320)
T PLN02789 145 WSH-RQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWR 221 (320)
T ss_pred HHH-HHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHH
Confidence 444 44555566889999999999988763 4556777666555554 222 4566666555443 223567777
Q ss_pred HHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004610 427 PALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (742)
Q Consensus 427 ~lI~~~~~~----g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (742)
-+-..+... +...+|.+.+.+....+ ..+......|++.|+..
T Consensus 222 Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 222 YLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 777667663 34456888888866543 34677888999999864
No 164
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.55 E-value=11 Score=40.25 Aligned_cols=153 Identities=13% Similarity=0.171 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHh----hcCHHHHHHHH
Q 004610 300 FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIY 375 (742)
Q Consensus 300 ~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf 375 (742)
+++...+++.|.+.|+.-+..+|- .++ +|...+. ...+.+|.++|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~l-----aA~--------------------------~i~~~~~~~~~~~~~~ra~~iy 126 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYL-----AAL--------------------------IILEEEEKEDYDEIIQRAKEIY 126 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHH-----HHH--------------------------HHHHhcccccHHHHHHHHHHHH
Confidence 567788999999999998887773 111 1222211 12467899999
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCC---HHHHHHH
Q 004610 376 EKMCLDEV---PMNEASLTAVGRMAMSMGDG----DMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGD---VDKACSV 444 (742)
Q Consensus 376 ~~M~~~g~---~pd~~tyn~Li~~~~~~g~~----~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~---~~~A~~l 444 (742)
+.|++.-. .++-.++.+|+.. ...++ +.++.+++.+...|+..+- .-+-+-|-+++.... +.++.++
T Consensus 127 ~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 127 KEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99998642 3677888888776 44443 4678888888888876543 344455555555432 4578899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHc
Q 004610 445 EEHMLEHGVYPEEPELEALLRVSVEAGK-----GDRVYYLLHKLRTS 486 (742)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~-----~~~A~~ll~~M~~~ 486 (742)
++.+.+.|+++....|..| ..++-.+. .++..++.+++.+.
T Consensus 205 ~~~l~~~~~kik~~~yp~l-GlLall~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 205 YNALKKNGVKIKYMHYPTL-GLLALLEDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHcCCccccccccHH-HHHHhcCCchHHHHHHHHHHHHHHhhC
Confidence 9999999999888887654 33333332 33444455555443
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=88.95 E-value=9.2 Score=45.65 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=98.4
Q ss_pred HhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 004610 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~--~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (742)
...+++..|.....++.++ -||. .|..+++++. +.|+.++|..+++.....+.. |..|...+-..|-..|..++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4567888999888887665 2553 5666666654 799999999999988766555 89999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHHHHHHhhc
Q 004610 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNS 504 (742)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~~ 504 (742)
|..+|++.... .|+..-...++.+|.|.+.+.+-.+.=-+|-+. .+... .|.++.-.+.+
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHh
Confidence 99999998754 688888899999999999876533333333332 22222 45554444433
No 166
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.88 E-value=8.6 Score=41.02 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC---ccccccc
Q 004610 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD---NNGQLDY 283 (742)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~---~~vtyn~ 283 (742)
+++.+.+++.|++.|++-+.++|-+..-...... .....-.+.+|..+| +.|.++..+- +.+++.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~----~~~~~~~~~ra~~iy-------~~mKk~H~fLTs~~D~~~a~ 146 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE----KEDYDEIIQRAKEIY-------KEMKKKHPFLTSPEDYPFAA 146 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc----cccHHHHHHHHHHHH-------HHHHHhCccccCccchhHHH
Confidence 4667789999999999999988887555554211 000112355677777 3677664443 5666666
Q ss_pred cccc
Q 004610 284 GSSP 287 (742)
Q Consensus 284 lI~~ 287 (742)
|+..
T Consensus 147 lLA~ 150 (297)
T PF13170_consen 147 LLAM 150 (297)
T ss_pred HHhc
Confidence 6655
No 167
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.85 E-value=49 Score=37.86 Aligned_cols=124 Identities=10% Similarity=0.065 Sum_probs=91.7
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCChh----hHHHHHHHHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLR----SYGPALSVFC 433 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~----ty~~lI~~~~ 433 (742)
--|.+.+.++.|.++|.+...- .+-|...++-+=-.....+.+.+|...|+.-... .+.+... +++-|=++|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 3577888999999999876543 2335666666666666788899999999876522 2223333 3455566788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
+.+..++|...++.-+... .-|..+|.++--.|...|+++.|.+.|++-..
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 8899999999999887653 45788888888888999999999999988754
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.52 E-value=1.7 Score=34.31 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~ 415 (742)
..+.+.|++++|.+.|++..+.. +-+...+..+-..+...|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556677777777777776654 22555666666666777777777777776643
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.46 E-value=2 Score=33.93 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+.+.|++++|...|+..++.. | +...+..+-..+...|++++|..+|++..+.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666554 3 3444555555566666666666666666443
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=87.60 E-value=4.1 Score=32.86 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=36.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..|.+.+++++|.++++.+.... ..+...|...=..+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34667777777777777777653 224444555556667777777777777777665
No 171
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.34 E-value=48 Score=38.12 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=81.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH--HHHHHH--H
Q 004610 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP--ALSVFC--N 434 (742)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~--lI~~~~--~ 434 (742)
|+.+.+.|++++|.....++...+ +-|+..+-.-+-++.+.+.+++|+++.+. .+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 567788899999999999988765 44556666667778889999999966543 22 1122222 355666 4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 435 NGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+..++|...++ |+.++.. +...=-+.+-+.|++++|+++++.+.++
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 688899988887 4444333 4444445677889999999999999766
No 172
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=86.70 E-value=34 Score=35.28 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=92.5
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (742)
..+--.|+-+.+..+....... -.-|....+.++....+.|++.+|...|.+...- -.||...|+.+=-+|-+.|+.+
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 4444555555555555443322 1235556667999999999999999999997644 6789999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.|..-|....+--. -+...+|-|--.|.-.|+.+.|..++..-...
T Consensus 152 ~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 152 EARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999988776421 13344566666677889999999999988776
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.52 E-value=44 Score=36.04 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004610 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (742)
Q Consensus 387 ~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (742)
..+.+.-|.-+...|+...|.++-++. ++ ||.+-|-.-|.+|+..+++++-..+... +-.++-|..++..
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 345666788888999999999987765 34 8999999999999999999887765432 2234889999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 004610 467 SVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 467 ~~~~g~~~~A~~ll~~M 483 (742)
|.+.|...+|..++.++
T Consensus 247 ~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI 263 (319)
T ss_pred HHHCCCHHHHHHHHHhC
Confidence 99999999999998884
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=85.77 E-value=16 Score=33.30 Aligned_cols=88 Identities=22% Similarity=0.207 Sum_probs=64.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHH-HHHHHHH
Q 004610 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE---EPEL-EALLRVS 467 (742)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd---~~ty-~~Li~~~ 467 (742)
-.++-..|+.++|..++++-...|+.... ..+-.+=..+...|+.++|..++++....- |+ .... ..+--++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 34566789999999999999998876653 344455667778899999999999887652 44 1111 2223466
Q ss_pred HHcCCHHHHHHHHHHH
Q 004610 468 VEAGKGDRVYYLLHKL 483 (742)
Q Consensus 468 ~~~g~~~~A~~ll~~M 483 (742)
...|+.++|...+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7889999999887654
No 175
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.70 E-value=26 Score=36.35 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=96.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-----H
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-----F 432 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-----~ 432 (742)
++....-.+.+.-...++++..+..-+.+.+....|.+.-.+.|+.+.|...|+...+..-+.|..+++.++.. |
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 45555556677777888999888777778899999999999999999999999988776555676777765543 3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHccCCCChhH
Q 004610 433 CNNGDVDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494 (742)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t 494 (742)
.-.++...|...+.+.....- -|...-| +|+..| .|+..+|.+.+..|... -|.|.+
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred ecccchHHHHHHHhhccccCC-CchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccch
Confidence 345788888888888876541 2222222 454444 58899999999999887 566653
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.51 E-value=13 Score=39.00 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----hhh
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRS 424 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~t 424 (742)
.|+. .+..+.+.|++++|...|+.+...- |+. ..+--+-..|...|+.++|...|+.+.+.- |+ ...
T Consensus 145 ~Y~~-A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dA 219 (263)
T PRK10803 145 DYNA-AIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADA 219 (263)
T ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHH
Confidence 4555 5555567799999999999998753 433 356677888999999999999999997641 22 222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 425 YGPALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
+--+...+-..|+.++|..+|+...+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 223445566889999999999988765
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=84.30 E-value=14 Score=35.27 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=52.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004610 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN-NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (742)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~-~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (742)
-..+...|++++|..+|+-.... .|....|-.=+.++++ .|++++|...|........ -|...+-.+=.++...|+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 33445667777777777665543 3444444333444433 4677777777776665542 344555555566667777
Q ss_pred HHHHHHHHHHHHHc
Q 004610 473 GDRVYYLLHKLRTS 486 (742)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (742)
.+.|.+-|+.-...
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666555
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=84.10 E-value=18 Score=34.54 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=70.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (742)
..+...|++++|..+|+.+..-. +-+..-|-.|--++-..|++++|++.+........ -|.+.|=-+=.++...|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHH
Confidence 45678899999999999988753 22445556666667779999999999999877653 45566666777899999999
Q ss_pred HHHHHHHHHHHC
Q 004610 440 KACSVEEHMLEH 451 (742)
Q Consensus 440 ~A~~l~~~M~~~ 451 (742)
.|.+-|+.-+..
T Consensus 121 ~A~~aF~~Ai~~ 132 (157)
T PRK15363 121 YAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHH
Confidence 999999877644
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=83.84 E-value=48 Score=34.20 Aligned_cols=88 Identities=8% Similarity=-0.079 Sum_probs=55.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~~~ 435 (742)
+|.-|-...-..+|...+..++.. .-..-+ .+.+-|.+.|.+..|..=|+.+.+. +........-.++.+|-..
T Consensus 150 li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 555555555555665544444332 001111 4556688888888888888888765 3334445556678888888
Q ss_pred CCHHHHHHHHHHHH
Q 004610 436 GDVDKACSVEEHML 449 (742)
Q Consensus 436 g~~~~A~~l~~~M~ 449 (742)
|..++|..+..-+.
T Consensus 226 g~~~~a~~~~~~l~ 239 (243)
T PRK10866 226 QLNAQADKVAKIIA 239 (243)
T ss_pred CChHHHHHHHHHHh
Confidence 98888887766543
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=83.83 E-value=42 Score=35.34 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=55.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--hhhHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-----MNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPR--LRSYGP 427 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~-----pd~~-tyn~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd--~~ty~~ 427 (742)
+...+.+.|++++|.++|++....-.. .+.- .|-..+-++...|++..|.+.|++.... ++..+ ...-..
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 667899999999999999998765332 2222 2223344666789999999999998644 23222 334444
Q ss_pred HHHHHHHc--CCHHHHHHHHHHH
Q 004610 428 ALSVFCNN--GDVDKACSVEEHM 448 (742)
Q Consensus 428 lI~~~~~~--g~~~~A~~l~~~M 448 (742)
||.+|=.. ..++.|..-|+.+
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHccc
Confidence 56655432 2445555555544
No 181
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=83.62 E-value=2.5 Score=34.80 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV-PMN-EASLTAVGRMAMSMGDGDMAFDMVKR 412 (742)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~----g~-~pd-~~tyn~Li~~~~~~g~~~~A~~l~~~ 412 (742)
|++ +-..|...|++++|++.|++...- |- .|+ ..+++.+-..+...|+.++|++.+++
T Consensus 8 ~~~-la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 8 YNN-LARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHH-HHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444 556666666666666666654421 11 122 34555556666666666666666654
No 182
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=82.83 E-value=3.7 Score=33.69 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL----G-INPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~----g-~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
.+|+.+-..|...|++++|++.|++..+. | -.|+ ..+|+.+=..|...|+.++|.+.+++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666777777777777777665422 1 1122 344555555555566666666665543
No 183
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=82.15 E-value=28 Score=42.64 Aligned_cols=121 Identities=9% Similarity=0.045 Sum_probs=78.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-----------
Q 004610 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----------- 422 (742)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----------- 422 (742)
.||+.|-..+++++|.++.++-.+. .|+. .-|..+ .+.+.++.++|..+ .+... +..+.
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGI--LSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHH--HHHhhcchhhhhhh--hhhhh-cccccchhHHHHHHHH
Confidence 3889999999999999998865543 3433 233333 55566666655555 22211 11111
Q ss_pred --------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 423 --------RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 423 --------~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..+-.+-.+|-+.|+.++|..+|+++.+.. .-|....|-+--.|+.. ++++|.+++.+-...
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 344456666667799999999999998876 44566777777777777 788777776655443
No 184
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.06 E-value=11 Score=39.85 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004610 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (742)
Q Consensus 382 g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (742)
|......+...++..-....+++.+...+-.++.. -..|+...|. .|. +|-.=+.+++..+...=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 44445555555555555566666666666665533 1334443333 222 334445556666666666667777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+++.||+.+.+.++..+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777766666555443
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=81.53 E-value=6.5 Score=31.26 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-DGDMAFDMVKRM 413 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g-~~~~A~~l~~~M 413 (742)
+=..+...|++++|+..|.+..+.. +-+...|..+-.++...| ++++|++.++..
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3344555555666666665555432 223445555555555555 455555555543
No 186
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=81.52 E-value=31 Score=38.67 Aligned_cols=64 Identities=14% Similarity=-0.035 Sum_probs=52.7
Q ss_pred CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (742)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~Li~~~~~~g~~~~A~~l~~~M~~~ 416 (742)
+...|++ +-..|.+.|++++|+..|++-.+. .||. .+|..+-.+|++.|+.++|+..+++..+.
T Consensus 74 ~a~a~~N-LG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVN-LGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456667 788899999999999999987664 4653 46899999999999999999999988765
No 187
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=81.40 E-value=24 Score=40.36 Aligned_cols=118 Identities=14% Similarity=0.044 Sum_probs=81.8
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHHcCCHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~-~~~~~g~~~~A~~l~~~M~~~g---~~Pd~~ty~~lI~~~~~~g~~~~ 440 (742)
....+.|.++++.+..+ -|+...|...-. .+...|++++|.+.|++..... -+.....|--+.-.++-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 55889999999999886 588777765543 4556999999999999754321 11122333335556777899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCH-------HHHHHHHHHHHH
Q 004610 441 ACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKG-------DRVYYLLHKLRT 485 (742)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~-------~~A~~ll~~M~~ 485 (742)
|.+.|.++.+.. ..+..+|.-+..+| ...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999754 33455555444443 456666 888888887754
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.09 E-value=5.9 Score=31.88 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (742)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~ 415 (742)
.|.+.+++++|.++++.+...+ +.+...|...-..+.+.|++++|...|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455566666666666665543 22444555555555666666666666665553
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=80.53 E-value=8.2 Score=30.67 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHH
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-DVDKACSVEEHM 448 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g-~~~~A~~l~~~M 448 (742)
.+|..+-..+...|++++|+..|++..+.. .-+...|..+=.+|.+.| +.++|.+.++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 445555555555566666666555554431 113334444444455555 455555555543
No 190
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.48 E-value=76 Score=32.89 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=81.8
Q ss_pred HHHhhcCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 361 EDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+....|+.+-|...++.+..+- |.. .-..+| .+-..|..++|.++++.+.+.. .-|.++|--=|...-..|.
T Consensus 61 AAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 3446677888888888887653 332 222221 1335778888999998887765 4455666554444555566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
--+|.+-+.+-.+. +.-|...|.-|-..|...|++++|.-.+++|.-.
T Consensus 136 ~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred cHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 66676666665544 4678888888889999999999999888888765
No 191
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.05 E-value=1.2e+02 Score=34.89 Aligned_cols=265 Identities=13% Similarity=0.024 Sum_probs=159.2
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
..-...++.+..+++++..+. .++..-.+-.=|.++-..|+..+-..+=..|.+. .+-..++|=++=--|-
T Consensus 253 ~~y~~c~f~~c~kit~~lle~-------dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl- 323 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEK-------DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL- 323 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhh-------CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH-
Confidence 344567888899999987432 2344456667788999999988877777788754 3334566666544444
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccc--cccccccccccccccccCChHHHHHHHHHHHHc--C
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ--LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL--G 314 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vt--yn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~--G 314 (742)
-.|+..+|++.|... -+++ +.+. |=..=+. |+-.|..|+|+.-+..--+. |
T Consensus 324 ---------~i~k~seARry~SKa-----t~lD-----~~fgpaWl~fghs------fa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 324 ---------MIGKYSEARRYFSKA-----TTLD-----PTFGPAWLAFGHS------FAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred ---------HhcCcHHHHHHHHHH-----hhcC-----ccccHHHHHHhHH------hhhcchHHHHHHHHHHHHHhccC
Confidence 447788888888522 1122 2221 3222233 55666666666655543221 1
Q ss_pred -CCCCccccchhHHhhccc---cccCCCchhhhhcCCCc-CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHh--CCCCC--
Q 004610 315 -QFSNGHMKLNSQLLDGRS---NLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCL--DEVPM-- 385 (742)
Q Consensus 315 -~~Pd~~ty~~~~li~~~~---~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~--~g~~p-- 385 (742)
..|-..+= +-.+.. +.|++.|... .++.| |....+. +=-..-..+.+.+|...|+.-.. ..+.+
T Consensus 379 ~hlP~LYlg----mey~~t~n~kLAe~Ff~~A--~ai~P~Dplv~~E-lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 379 CHLPSLYLG----MEYMRTNNLKLAEKFFKQA--LAIAPSDPLVLHE-LGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred CcchHHHHH----HHHHHhccHHHHHHHHHHH--HhcCCCcchhhhh-hhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 11211110 000000 2222222221 12223 3333333 21122245677888888876552 11111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004610 386 --NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (742)
Q Consensus 386 --d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (742)
=+.+++.|=..|-+.+..++|+..++.-... ..-|..||.++=-.|...|+++.|.+.|..-. .+.||..+-..|
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~l 528 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISEL 528 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHH
Confidence 2346788888899999999999999987655 45678888888888899999999999998766 468998888888
Q ss_pred HHHH
Q 004610 464 LRVS 467 (742)
Q Consensus 464 i~~~ 467 (742)
+..+
T Consensus 529 L~~a 532 (611)
T KOG1173|consen 529 LKLA 532 (611)
T ss_pred HHHH
Confidence 8744
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=79.90 E-value=26 Score=39.19 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 384 ~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
+.+...|+.+-.+|.+.|++++|+..|++-.+. .|+.. +|..+-.+|...|+.++|.+.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788999999999999999999999986544 57743 5777999999999999999999998875
No 193
>PLN02789 farnesyltranstransferase
Probab=79.50 E-value=84 Score=33.92 Aligned_cols=131 Identities=11% Similarity=-0.004 Sum_probs=91.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (742)
+-..+...+..++|+.+.++..... +-+..+|+.--..+.+.| ++++++..++++.+..- -+..+|+---..+-+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcC
Confidence 4455667789999999999988753 223345655555556667 57999999999876632 23334553333334455
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 437 D--VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 437 ~--~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
. .+++..+++.|.+.. .-|...|+..--.+...|+++++++.++++.+. .+...
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~ 176 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNN 176 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCch
Confidence 4 367888888888664 346778888778888889999999999999886 44443
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=78.67 E-value=1.2e+02 Score=35.27 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004610 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (742)
Q Consensus 384 ~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (742)
..+...|.++--.+...|++++|...+++..... |+...|..+-..+...|+.++|.+.+++.... .|...||-
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLY 490 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHH
Confidence 3455678777666677899999999999987665 78888998899999999999999999887654 46555553
No 195
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=78.07 E-value=69 Score=31.04 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 372 ~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
.+.+..+...++.|+...|..+|+.+.+.|+... +..+...++-||...-...+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4566677778999999999999999999998664 4455566788887777666644433 334455555555432
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
=...+..+++.+...|++-+|.++.+..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0124677788888999999999998775
No 196
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.46 E-value=44 Score=32.09 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=22.1
Q ss_pred HcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 399 SMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
+.++.+++..++..|.--. -.|...++...| +.+.|++.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555544221 112223333333 33445555555555555433
No 197
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=76.71 E-value=1.8e+02 Score=35.24 Aligned_cols=220 Identities=12% Similarity=0.063 Sum_probs=123.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccccc
Q 004610 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (742)
Q Consensus 202 ~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vty 281 (742)
...+++..|++..+...+. .|+ ..|..++.|+... +.|+.++|...++ . ....+..|..|-
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~--------r~gk~~ea~~~Le-------~-~~~~~~~D~~tL 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLF--------RLGKGDEALKLLE-------A-LYGLKGTDDLTL 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHH--------HhcCchhHHHHHh-------h-hccCCCCchHHH
Confidence 3567888899888887753 233 3566677777633 6688889987774 2 221133377788
Q ss_pred ccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHH
Q 004610 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (742)
Q Consensus 282 n~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~ 361 (742)
.++-.+ |-..|+.++|..+++..... -|+ +. ++ ..+-.+
T Consensus 81 q~l~~~------y~d~~~~d~~~~~Ye~~~~~--~P~---ee---ll---------------------------~~lFma 119 (932)
T KOG2053|consen 81 QFLQNV------YRDLGKLDEAVHLYERANQK--YPS---EE---LL---------------------------YHLFMA 119 (932)
T ss_pred HHHHHH------HHHHhhhhHHHHHHHHHHhh--CCc---HH---HH---------------------------HHHHHH
Confidence 888888 88999999999988865443 233 11 11 113345
Q ss_pred HHhhcCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCC-CCCChhhHH
Q 004610 362 DAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------GDMAFDMVKRMKSLG-INPRLRSYG 426 (742)
Q Consensus 362 ~~k~g~~~~----A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~----------~~~A~~l~~~M~~~g-~~Pd~~ty~ 426 (742)
|.|.+.+.+ |+++++. ++-+...|=++|+.....-. ..-|.+.++.+.+.+ ---+..=.-
T Consensus 120 yvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence 555554432 4444442 22234444445554443221 223555666665443 111111111
Q ss_pred HHHHHHHHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 427 PALSVFCNNGDVDKACSVEEH-MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~-M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.-+..+-..|..++|++++.. ..+.-..-+...-+--++.+...+++.+..++-.++...
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 112234456778888888743 333333334444456667777778888887777777766
No 198
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.69 E-value=21 Score=37.64 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
..++..+...|+.+.+.+.++++.... .-|...|..||.+|.+.|+...|...++.+.+
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344444555555555555555554432 23455555555555555555555555544433
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=76.39 E-value=63 Score=32.17 Aligned_cols=73 Identities=14% Similarity=0.027 Sum_probs=47.7
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCS 237 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~~~~ 237 (742)
.-..|+..+|.+.|+.+... -|.....|+ ..-.+..++-+.|+.+.|...|++..+. .-.|. .-+...+.|.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~--A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~ 88 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDR--YPNSPYAPQ--AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLS 88 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH---TTSTTHHH--HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCChHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHH
Confidence 44678999999999999765 244434444 3446678899999999999999998854 22232 33444444444
No 200
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.13 E-value=12 Score=39.58 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=69.0
Q ss_pred cccccccccccccccccccccCChHHHHHHHHHHHHcC---CCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHh
Q 004610 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (742)
Q Consensus 277 ~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G---~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~t 353 (742)
.+++-..++.. ..+..+++.+..++-+++..- ..|+...|
T Consensus 63 s~~~Vd~~V~v------~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~------------------------------- 105 (418)
T KOG4570|consen 63 SSLTVDRLVDV------ISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH------------------------------- 105 (418)
T ss_pred ceeehhhhhhc------cccccchhHHHHHHHHHhcCcchhhhccccHH-------------------------------
Confidence 44445555555 556778888888887776531 22222222
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (742)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~ 416 (742)
.+--.+-.-+.++++-++..=...|+-||.+|++.||+-+.+.++..+|..+.-+|...
T Consensus 106 ----~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 106 ----TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ----HHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 23334455577788888888888899999999999999999999998888887777654
No 201
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=75.15 E-value=1.2e+02 Score=36.62 Aligned_cols=217 Identities=12% Similarity=0.066 Sum_probs=106.6
Q ss_pred ccCcccCccccccccc-----ccccchhhhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHH
Q 004610 126 SREMSSGNSSLRSKDK-----KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDM 200 (742)
Q Consensus 126 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~ 200 (742)
.|.|..+|.+...... ++-.-.+++---.++.-.+...++...|..+-+..++.. . + ..=-++ .
T Consensus 741 iG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~----e----~-eakvAv--L 809 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE----E----D-EAKVAV--L 809 (1416)
T ss_pred eccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc----c----h-hhHHHH--H
Confidence 5777777777654332 222222222222233234555566666766666653211 0 0 111111 2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccc-
Q 004610 201 CSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG- 279 (742)
Q Consensus 201 ~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~v- 279 (742)
...-|.+++|+.+|.+=++. ..|=..|- ..|++++|.++-. -.++-.+.+.+
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQ----------s~g~w~eA~eiAE--------~~DRiHLr~Tyy 862 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQ----------SQGMWSEAFEIAE--------TKDRIHLRNTYY 862 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHH----------hcccHHHHHHHHh--------hccceehhhhHH
Confidence 34668999999999987753 33444555 6688999998863 23321122111
Q ss_pred ccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHH
Q 004610 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (742)
Q Consensus 280 tyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (742)
-|.-- +-..++++.|++.|++- ++..++...++.-+-. ....-+++.-.|....|..
T Consensus 863 ~yA~~---------Lear~Di~~AleyyEK~-------~~hafev~rmL~e~p~----~~e~Yv~~~~d~~L~~WWg--- 919 (1416)
T KOG3617|consen 863 NYAKY---------LEARRDIEAALEYYEKA-------GVHAFEVFRMLKEYPK----QIEQYVRRKRDESLYSWWG--- 919 (1416)
T ss_pred HHHHH---------HHhhccHHHHHHHHHhc-------CChHHHHHHHHHhChH----HHHHHHHhccchHHHHHHH---
Confidence 12111 34467788888888742 2222321112111111 1111122222344455555
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKR 412 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~ 412 (742)
...-..|++|.|+.+|...+. |-++++..|-.|+.++|-.+-++
T Consensus 920 qYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 920 QYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred HHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh
Confidence 222345777777777766543 34455555555555555555443
No 202
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.82 E-value=1.6e+02 Score=33.48 Aligned_cols=49 Identities=14% Similarity=-0.023 Sum_probs=33.2
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQ 218 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~-~~tyn~lI~~~~~~g~~~~A~~lf~~M~ 218 (742)
+.++.++|.+.+..-++. .|| .+.|.-.-.+|...|+++++.+--....
T Consensus 127 ~~kkY~eAIkyY~~AI~l--------~p~epiFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIEL--------CPDEPIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred hcccHHHHHHHHHHHHhc--------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 456778888888886543 233 3667777777788888887776555444
No 203
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.73 E-value=52 Score=34.71 Aligned_cols=140 Identities=9% Similarity=0.176 Sum_probs=101.3
Q ss_pred hcCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHHcCCHHH
Q 004610 365 KYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMS-MG-DGDMAFDMVKRMKS-LGINPRLRSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~-~g~~pd~~tyn~Li~~~~~-~g-~~~~A~~l~~~M~~-~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (742)
+..+.+|+.+|+...- ..+.-|+.+...|++.... .+ ....-.++.+-+.. .|-.++.-+-.++|..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4456778888874433 3466678888888887776 22 23334455555543 3567888888999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHccCCCChhHHHHHHHHhhc
Q 004610 441 ACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHK-----LRTSVRKVSPSTADVIAKWFNS 504 (742)
Q Consensus 441 A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~-----M~~~~~~~~p~t~~~I~~~~~~ 504 (742)
-+++++.-... +..-|...|..+|+.....|+..-..++..+ +++....++|+....|..+|+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99999887765 6667889999999999999998887777654 3444344666676667777654
No 204
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=74.57 E-value=23 Score=37.26 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELEA 462 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~ty~~ 462 (742)
.+++.++..+...|+.+.+...++++.... .-|...|-.+|.+|.+.|+...|...|+.+.. .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356666666666666666666666665542 24566666667777777766666666665543 477777776666
Q ss_pred HHHH
Q 004610 463 LLRV 466 (742)
Q Consensus 463 Li~~ 466 (742)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=73.90 E-value=44 Score=37.24 Aligned_cols=142 Identities=12% Similarity=0.047 Sum_probs=98.9
Q ss_pred cccccccccccccccccCChHHHHHHHHHHHHcC-CCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHH
Q 004610 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (742)
Q Consensus 281 yn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G-~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (742)
|..+|++ ..+..-++.|..+|-+..+.| +.+++..|+ + +|
T Consensus 400 ~C~~~N~------v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~--------------------------------A-~~ 440 (660)
T COG5107 400 FCVHLNY------VLRKRGLEAARKLFIKLRKEGIVGHHVYIYC--------------------------------A-FI 440 (660)
T ss_pred HHHHHHH------HHHHhhHHHHHHHHHHHhccCCCCcceeeeH--------------------------------H-HH
Confidence 5566666 555566677777777777776 455555554 5 77
Q ss_pred HHHHhhcCHHHHHHHHHH-HHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHc
Q 004610 360 SEDAKKYAFQRGFEIYEK-MCLDEVPMNEAS-LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNN 435 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~-M~~~g~~pd~~t-yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~ 435 (742)
..+|. |+...|..+|+- |+.. ||... -+-.+.-+..-++-+.|..+|+.-..+ +.-+ ...|-.+|..=..-
T Consensus 441 E~~~~-~d~~ta~~ifelGl~~f---~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 441 EYYAT-GDRATAYNIFELGLLKF---PDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMV 515 (660)
T ss_pred HHHhc-CCcchHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhh
Confidence 77654 566788999975 3332 44444 356777788899999999999954433 2223 57899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004610 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (742)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (742)
|++..|..+-++|.+. .|-..+-.....-|.
T Consensus 516 G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 516 GSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred cchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 9999999999988753 566666555555543
No 206
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.84 E-value=1.5e+02 Score=32.88 Aligned_cols=252 Identities=10% Similarity=-0.029 Sum_probs=124.8
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccc
Q 004610 201 CSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (742)
Q Consensus 201 ~~~~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~v 279 (742)
.+-.++-..|.+++-.+... -++-|++....+-+.+. ..|+-++|+..|.. ..|.+...+..--
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCANPDNVEAMD 270 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCChhhhhhHH
Confidence 34456666666666655533 45567777778888888 88999999999951 1222221111000
Q ss_pred ccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc----cccCCCchhhhhcCCCcCHHhhH
Q 004610 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS----NLERGPDDQSRKKDWSIDNQDAD 355 (742)
Q Consensus 280 tyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~----~~a~~~~~~m~~~g~~pd~~tyn 355 (742)
.|..| +.+.|+.++...+...+.... -.|-. .-.++++- +.++..+. ..++-+..|....-
T Consensus 271 ~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~----~~ta~-~wfV~~~~l~~~K~~~rAL~-~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 271 LYAVL---------LGQEGGCEQDSALMDYLFAKV----KYTAS-HWFVHAQLLYDEKKFERALN-FVEKCIDSEPRNHE 335 (564)
T ss_pred HHHHH---------HHhccCHhhHHHHHHHHHhhh----hcchh-hhhhhhhhhhhhhhHHHHHH-HHHHHhccCcccch
Confidence 14444 566777777766666554321 00100 01111111 11111000 00111111221222
Q ss_pred HHHH--HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HHHH
Q 004610 356 EIRL--SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA-LSVF 432 (742)
Q Consensus 356 ~~lI--~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~l-I~~~ 432 (742)
..++ ..+...++.++|.=-|.....-- +-+...|-.|+..|...|++.||.-+-++-.+. +.-+..+.+.+ -..+
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 2222 23445667777777776654421 235677888888888888888776655543222 22223333211 0111
Q ss_pred -HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 433 -CNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 433 -~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
-.-..-|+|..+++.-.. +.|+- ..-+.+-..+...|..+++..++++-...
T Consensus 414 ~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred ccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 111223556655554332 33442 23344555566777777888777766554
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=70.97 E-value=1.1e+02 Score=30.21 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=87.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCN 434 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g---~~Pd~~ty~~lI~~~~~ 434 (742)
|-.+....|+..+|...|++-..--+.-|....-.+.++....+++.+|...++.+.+.. -.||.. -.+-..|..
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa 172 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--LLFARTLAA 172 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--HHHHHHHHh
Confidence 667888999999999999998765566788888999999999999999999999987764 344431 123345677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
.|..+.|..-|+...+. .|+...-.-.-..+.+.|+.+++..-+.++
T Consensus 173 ~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 173 QGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred cCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 78888899999888765 344333222223346778777665544444
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=70.05 E-value=1.1e+02 Score=34.22 Aligned_cols=172 Identities=8% Similarity=0.031 Sum_probs=101.7
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
+-+.+++.+|+++|.+....-- .+... |. ...+-+-+|++|.... ++....
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~-----------------lk----------eEvl~grilnAffl~n-ld~Me~ 66 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFL-----------------LK----------EEVLGGRILNAFFLNN-LDLMEK 66 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHH-----------------HH----------HHHHhhHHHHHHHHhh-HHHHHH
Confidence 4567889999999988765421 01111 11 0111123777776543 444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHC--CCC------------CChhhHHHHHHHHHHcCC
Q 004610 374 IYEKMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSL--GIN------------PRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~Li~~~--~~~g~~~~A~~l~~~M~~~--g~~------------Pd~~ty~~lI~~~~~~g~ 437 (742)
.+.++.+. .|. ..|-.|..++ -+.+..++|.+.+..-.+. +-. +|..-=+..++.+...|+
T Consensus 67 ~l~~l~~~--~~~-s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~ 143 (549)
T PF07079_consen 67 QLMELRQQ--FGK-SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR 143 (549)
T ss_pred HHHHHHHh--cCC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC
Confidence 55555443 232 2344454443 3678888898888876655 322 233333567888889999
Q ss_pred HHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc-CCCChhHHHHHHHHhhch
Q 004610 438 VDKACSVEEHMLEH----GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV-RKVSPSTADVIAKWFNSK 505 (742)
Q Consensus 438 ~~~A~~l~~~M~~~----gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~-~~~~p~t~~~I~~~~~~~ 505 (742)
+.+++.++++|... ....+..+|+.++-.+++.= |-++++.. -.+-|+-|..|..+.+..
T Consensus 144 f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY--------fLEl~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 144 FSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY--------FLELKESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred cchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH--------HHHHHHhcccccChHHHHHHHHHHHHH
Confidence 99999999888765 34488999998777776643 33332211 135566666666665543
No 209
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=69.78 E-value=42 Score=30.99 Aligned_cols=87 Identities=8% Similarity=0.005 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (742)
...+|..+...+.+..+..+++.+...+. .+...+|.+|..|++... ++..+.+.. .++.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 45678888888899999999999988874 677899999999998753 333444442 2344455568888888
Q ss_pred cCCHHHHHHHHHHHH
Q 004610 470 AGKGDRVYYLLHKLR 484 (742)
Q Consensus 470 ~g~~~~A~~ll~~M~ 484 (742)
.+.++++..++.++.
T Consensus 82 ~~l~~~~~~l~~k~~ 96 (140)
T smart00299 82 AKLYEEAVELYKKDG 96 (140)
T ss_pred cCcHHHHHHHHHhhc
Confidence 888888888888873
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=69.31 E-value=47 Score=31.25 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=25.8
Q ss_pred hhcCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 364 KKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g--~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~ 416 (742)
+.|++++|.+.|+.+..+- -+-....---|+.+|.+.|++++|...+++..+.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4555555555555555431 0112233334555555555555555555555443
No 211
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.70 E-value=98 Score=29.42 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=35.7
Q ss_pred hhcCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 004610 364 KKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (742)
..++.+++..+++.|.--- -.|...+|-..| +...|++++|..+|++..+.+. ...|...+.++|-...-|-.|
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG---APPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHhcCChHH
Confidence 3556666666666655321 112233333333 2455666666666666554431 123555555555544333333
Q ss_pred H
Q 004610 443 S 443 (742)
Q Consensus 443 ~ 443 (742)
+
T Consensus 97 r 97 (153)
T TIGR02561 97 H 97 (153)
T ss_pred H
Confidence 3
No 212
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.08 E-value=2 Score=40.17 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=59.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+|+.+-+.+.++...++++.+...+-.-+....|.++..|++.++.+...++++. .+.+-...++..|-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 6667777778888888888888776667788888899999888887877777762 122333567777777777
Q ss_pred HHHHHHHHHHH
Q 004610 438 VDKACSVEEHM 448 (742)
Q Consensus 438 ~~~A~~l~~~M 448 (742)
+++|..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777766654
No 213
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=66.63 E-value=1.3e+02 Score=29.19 Aligned_cols=126 Identities=11% Similarity=0.133 Sum_probs=81.7
Q ss_pred hcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCC
Q 004610 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPR 421 (742)
Q Consensus 344 ~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g--~~~~A~~l~~~M~~~g~~Pd 421 (742)
+.|+.|+...|.- +|+.+.+.|++. .+..+...++-+|.......+-.+.... -..-|+++++++...
T Consensus 22 ~~~i~~~~~L~~l-li~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~----- 91 (167)
T PF07035_consen 22 QHNIPVQHELYEL-LIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTA----- 91 (167)
T ss_pred HcCCCCCHHHHHH-HHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhh-----
Confidence 3444555544545 999999999854 4556667788888777766554333221 134566666666533
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
|..++..+...|++-+|..+....... +......++.+-.+.++...-..+++-..++
T Consensus 92 ---~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 92 ---YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888899999999999988775322 2223356777777777776666666555543
No 214
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.36 E-value=75 Score=33.64 Aligned_cols=84 Identities=19% Similarity=0.147 Sum_probs=46.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 004610 398 MSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDR 475 (742)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~ 475 (742)
.+.+++.+|.+.+.+-.+. .| |.+-|.-=-.+|++.|..+.|++=.+.-+.- -|. ..+|..|=.+|...|++++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 4556666666666655433 23 3344444455666666666666544444322 222 3456666666666677777
Q ss_pred HHHHHHHHHH
Q 004610 476 VYYLLHKLRT 485 (742)
Q Consensus 476 A~~ll~~M~~ 485 (742)
|.+-|++-.+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 7666665543
No 215
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=65.32 E-value=2.4e+02 Score=33.77 Aligned_cols=81 Identities=7% Similarity=0.030 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004610 403 GDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (742)
Q Consensus 403 ~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (742)
..++.+.+++..+. +-.|++.-|-++= |+..++++.|.+...+..+.+-.-+...|.-|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34677788877665 4567666665554 56678899999999999888667788888888888888899999988876
Q ss_pred HHHH
Q 004610 482 KLRT 485 (742)
Q Consensus 482 ~M~~ 485 (742)
.-.+
T Consensus 538 ~al~ 541 (799)
T KOG4162|consen 538 AALE 541 (799)
T ss_pred HHHH
Confidence 5433
No 216
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.94 E-value=1.4e+02 Score=28.82 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=63.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (742)
+++.-.+.++.+++..+++-|+--. -.|...++-.+| +...|++++|..+|+++...+ -..-|...+.++|-..
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~---~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA---PGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC---CCChHHHHHHHHHHHH
Confidence 3455567789999999999997632 123344455444 468999999999999987663 3445677777888766
Q ss_pred CHHHHHHHHHH-HHHCCCCCC
Q 004610 437 DVDKACSVEEH-MLEHGVYPE 456 (742)
Q Consensus 437 ~~~~A~~l~~~-M~~~gv~pd 456 (742)
.-+..|+.+.. +.+.+-.|+
T Consensus 91 ~~D~~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGADPD 111 (160)
T ss_pred cCChHHHHHHHHHHhcCCChH
Confidence 66666665543 455443333
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.64 E-value=97 Score=32.30 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=37.4
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (742)
-..++..|...|.+..... .-|.+.-|.-.-+..-.|+..+|.+.++.|+.. .|...+-++++-.+|
T Consensus 264 g~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~ 330 (366)
T KOG2796|consen 264 GQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLT 330 (366)
T ss_pred cccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHH
Confidence 3445566666666665543 224444444333344466777777777777654 466656565554444
No 218
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.91 E-value=89 Score=33.09 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=79.2
Q ss_pred HHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHH
Q 004610 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~ 439 (742)
-..+.+++.+|+..|.+...-. +-|.+-|..=..+|++.|..+.|++=-+.-.. +.|+ ..+|..|=.+|...|+.+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 4568899999999999988753 45788899999999999999999876655433 3344 578888989999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 440 KACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
+|.+.|+.-++ +.|+-.+|-.=|.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 99999887664 6788887765443
No 219
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=63.19 E-value=85 Score=29.57 Aligned_cols=98 Identities=7% Similarity=0.066 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004610 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP---RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (742)
Q Consensus 387 ~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P---d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (742)
...|+.-... .+.|++++|.+.|+.+..+ ... ....---|+.+|.+.|+.++|...+++.++..-.--.+-|.-.
T Consensus 11 ~~ly~~a~~~-l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEA-LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3444444443 4789999999999999876 211 2244455899999999999999999999876432223556666
Q ss_pred HHHHHHcCC-----------------HHHHHHHHHHHHHc
Q 004610 464 LRVSVEAGK-----------------GDRVYYLLHKLRTS 486 (742)
Q Consensus 464 i~~~~~~g~-----------------~~~A~~ll~~M~~~ 486 (742)
+.|++.-.. ...|+.-|..+.+.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 666543332 56888888888876
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=63.06 E-value=2.4e+02 Score=31.12 Aligned_cols=128 Identities=16% Similarity=0.062 Sum_probs=73.6
Q ss_pred hhcCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCh--hhHHHHHHHHHHc---C
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRL--RSYGPALSVFCNN---G 436 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~--~ty~~lI~~~~~~---g 436 (742)
+.|.-+.|...-+.--.. .| =...+.+++...|..|+++.|+++++.-+... +.++. +.-..|+.+-... -
T Consensus 166 r~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 566666666665554332 22 23567788888888888888888888765543 44544 2223344332221 1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHH
Q 004610 437 DVDKACSVEEHMLEHGVYPEEPELE-ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~-~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~ 497 (742)
+-..|...-. ....+.||.+--. .--.+|.+.|++.++-.+++.+=+. .+.|+.+..
T Consensus 244 dp~~Ar~~A~--~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l 301 (531)
T COG3898 244 DPASARDDAL--EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL 301 (531)
T ss_pred ChHHHHHHHH--HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH
Confidence 2233333222 2333455544322 2235677888888888888888777 777775544
No 221
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.77 E-value=2e+02 Score=29.97 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=81.6
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~ 443 (742)
..|..++|.++++.+.+.. +-|.++|--=+-..-..|+--+|++-+.+..+. +.-|...|.-+-..|...|++++|.-
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 3577888999998888776 667788876666666777777888887777665 67788899999999999999999998
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHHHcC---CHHHHHHHHHHHH
Q 004610 444 VEEHMLEHGVYPEEPEL-EALLRVSVEAG---KGDRVYYLLHKLR 484 (742)
Q Consensus 444 l~~~M~~~gv~pd~~ty-~~Li~~~~~~g---~~~~A~~ll~~M~ 484 (742)
.+++|.-. .|....| ..+-+.+--.| +.+-|.+++.+-.
T Consensus 176 ClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 176 CLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88888754 4554443 33434332222 3344555554443
No 222
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=62.75 E-value=75 Score=31.07 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=25.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKR 412 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~Li~~~~~~g~~~~A~~l~~~ 412 (742)
+-+.|++.|+.+.|.+.|.++......|. ...+-.+|+...-.+++..+...+.+
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44555555555555555555554432222 12334444445555555544444443
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=60.98 E-value=2.7e+02 Score=30.86 Aligned_cols=247 Identities=15% Similarity=0.094 Sum_probs=126.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccc-
Q 004610 203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC-SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ- 280 (742)
Q Consensus 203 ~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~-~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vt- 280 (742)
-.|+.+.|.+-|+.|.. |+.|--.=|+++ .... +.|.-+.|...-. +- .+.-+..-
T Consensus 132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAq-------r~GareaAr~yAe-------~A---a~~Ap~l~W 189 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQ-------RLGAREAARHYAE-------RA---AEKAPQLPW 189 (531)
T ss_pred hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHH-------hcccHHHHHHHHH-------HH---HhhccCCch
Confidence 46999999999999985 334333333332 2222 4555555555432 11 01223333
Q ss_pred -cccccccccccccccccCChHHHHHHHHHHHHcC-CCCCccccchhHHhhccc------cccCCCchhhhhcCCCcCHH
Q 004610 281 -LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRS------NLERGPDDQSRKKDWSIDNQ 352 (742)
Q Consensus 281 -yn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G-~~Pd~~ty~~~~li~~~~------~~a~~~~~~m~~~g~~pd~~ 352 (742)
+.+.+.. .|..|+++.|+++.+.-+... +.+|+.--.-..|+.+-. +.+...-.......+.||.+
T Consensus 190 A~~AtLe~------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlv 263 (531)
T COG3898 190 AARATLEA------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLV 263 (531)
T ss_pred HHHHHHHH------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccc
Confidence 4556677 999999999999999877654 445554332112222221 00001111122233445544
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-hhhHHHHHH
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-LRSYGPALS 430 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~-g~~Pd-~~ty~~lI~ 430 (742)
---.+--..+.+.|++.++-.+++.+-+..-.|+.. ++-.+++.|+ .+.+=++..++. .++|| ..+--.+..
T Consensus 264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~ 337 (531)
T COG3898 264 PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAE 337 (531)
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 333333456777777777777777777665445431 1222233333 333333333321 23444 333444555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 004610 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE-AGKGDRVYYLLHKLRT 485 (742)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~-~g~~~~A~~ll~~M~~ 485 (742)
+-...|++..|..--+.... ..|....|-.|-+.-.. .|+-.++...+.+-..
T Consensus 338 aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 55566777666544433322 35666666655554433 3666666666554433
No 224
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=60.93 E-value=1.5e+02 Score=28.15 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=62.0
Q ss_pred HcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004610 399 SMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (742)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (742)
..++++++..++..|.--. -.|...+|-..| +...|++++|..+|++..+.+..+ .|..-+.++|-...-|-..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHhcCChHH
Confidence 4889999999999997542 234556666666 567899999999999999876332 4555555555443333322
Q ss_pred HHH-HHHHHccCCCChhHHHHHHHHh
Q 004610 478 YLL-HKLRTSVRKVSPSTADVIAKWF 502 (742)
Q Consensus 478 ~ll-~~M~~~~~~~~p~t~~~I~~~~ 502 (742)
+.. .++.+. +..+++..+++.+.
T Consensus 97 r~~A~~~le~--~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 97 HVHADEVLAR--DADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHh--CCCHhHHHHHHHHh
Confidence 222 333344 56666655555554
No 225
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.34 E-value=1.6e+02 Score=32.52 Aligned_cols=23 Identities=26% Similarity=0.098 Sum_probs=10.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004610 200 MCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (742)
Q Consensus 200 ~~~~~g~~~~A~~lf~~M~~~Gi~pd~ 226 (742)
..++.|+.+-+..++ +.|..|+.
T Consensus 8 ~A~~~g~~~iv~~Ll----~~g~~~n~ 30 (413)
T PHA02875 8 DAILFGELDIARRLL----DIGINPNF 30 (413)
T ss_pred HHHHhCCHHHHHHHH----HCCCCCCc
Confidence 334455554433333 45665554
No 226
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=60.27 E-value=92 Score=30.44 Aligned_cols=97 Identities=15% Similarity=0.082 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCH----H
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLE---HGVYPEE----P 458 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~---~gv~pd~----~ 458 (742)
..+.-+.+-|++.|+.++|++.+.++.+....|. ...+-.+|....-.|++..+.....+... .|-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5678888999999999999999999988755444 34556678888888999888877766543 3322222 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.|..|.. ...|++.+|-++|-+....
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHccCcC
Confidence 2232222 3567889998888777544
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=60.18 E-value=69 Score=37.57 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--
Q 004610 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL-- 460 (742)
Q Consensus 383 ~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty-- 460 (742)
++-|.-..-.|.+++.+.|..++|.+.|-+. +. | -..++.|....++.+|.++-++.. .|.+.|.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tlia 914 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIA 914 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHH
Confidence 4445666778888999999999988877442 22 3 256777888888888888776543 2222221
Q ss_pred ------------HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 461 ------------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 461 ------------~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
---|..+.++|+.-+|.+++.+|.++
T Consensus 915 k~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 915 KQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 11244567788888888888888654
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.96 E-value=1.7e+02 Score=30.55 Aligned_cols=100 Identities=14% Similarity=0.030 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHHHH
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLG----INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPE-EPELEA 462 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~~~g----~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd-~~ty~~ 462 (742)
.|+.-++.+ +.|++.+|..-|....+.. ..||.. --|-..+...|+.+.|-.+|..+.+. +-.|- ...+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~--yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAY--YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhH--HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 566655544 5666777777777766552 233332 22566777777888877777777653 11222 234445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 463 LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 463 Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
|-....+.|+.++|...|+++.+. +|..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 555667788888888888888877 55544
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=59.20 E-value=1.2e+02 Score=34.40 Aligned_cols=80 Identities=9% Similarity=0.021 Sum_probs=54.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~~~ 435 (742)
+-...-+.|+.++|.+.|.+|.+.. ..-+....-.||.++...+...++..++.+-.+... +.-..+|+..+--+-..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3344556799999999999987643 222345677799999999999999999988643322 22357788766544444
Q ss_pred CC
Q 004610 436 GD 437 (742)
Q Consensus 436 g~ 437 (742)
|+
T Consensus 345 ~d 346 (539)
T PF04184_consen 345 GD 346 (539)
T ss_pred cc
Confidence 43
No 230
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=58.60 E-value=17 Score=25.10 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKR 412 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~ 412 (742)
|+.|-+.|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666655
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.37 E-value=55 Score=37.05 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=71.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHH-------Hh----------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKM-------CL----------DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M-------~~----------~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (742)
++..+-+.|..+.|+++-.+- .+ ..-..+...|..|-+...+.|+++.|.+.|.+..
T Consensus 301 i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------ 374 (443)
T PF04053_consen 301 IARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK------ 374 (443)
T ss_dssp HHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------
T ss_pred HHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------
Confidence 666666677777776653221 11 1123467788888888888888888888887643
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
-|..|+--|.-.|+.++-.++.+.-..+|- +|..+.++.-.|+.++..++|.+-
T Consensus 375 ---d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 375 ---DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ---CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 246677777778888777777766666552 566666666678887777776554
No 232
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=57.46 E-value=2.5e+02 Score=29.68 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHH
Q 004610 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPE 459 (742)
Q Consensus 384 ~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~~---~g~~~~A~~l~~~M~~~gv~pd~~t 459 (742)
+-|...|-.|=..|...|+.+.|..-|..-.+. |-.|+. +..+-.++.. ..+..+|..+|++++... .-|+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 447788999999999999999999999876543 443433 3333332222 235568899999998654 234455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..-|--.+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555556788999999999999999887
No 233
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=56.28 E-value=2.8 Score=39.13 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004610 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (742)
.+|+.+-+.+.++.+..+++.+...+-.-+....+.++..|++.+..++..++++. .+..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35677778888999999999998877667788899999999999888888887772 22244466778888888
Q ss_pred CHHHHHHHHHHHHHc
Q 004610 472 KGDRVYYLLHKLRTS 486 (742)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (742)
.+++|..++.++...
T Consensus 85 l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNH 99 (143)
T ss_dssp SHHHHHHHHHCCTTH
T ss_pred hHHHHHHHHHHcccH
Confidence 888888888877543
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=54.84 E-value=26 Score=24.16 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004610 193 QLRVELDMCSKRGDVMGAIRLYDKAQ 218 (742)
Q Consensus 193 tyn~lI~~~~~~g~~~~A~~lf~~M~ 218 (742)
+|+.|=..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999854
No 235
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=54.50 E-value=1.2e+02 Score=34.17 Aligned_cols=47 Identities=19% Similarity=0.105 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMNEASLTAVGRMAMS 399 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g~~pd~~tyn~Li~~~~~ 399 (742)
.+..+.++.+...|++.++..++++|..+ .+.-|.-+||.++-.+++
T Consensus 129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 129 FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 34455788888999999999998888754 344888999987766665
No 236
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=54.11 E-value=1.1e+02 Score=35.64 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=58.3
Q ss_pred HhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh-----------hHHHHHHH
Q 004610 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-----------SYGPALSV 431 (742)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-----------ty~~lI~~ 431 (742)
-+...+.-|-++|.+|-. ..+++......+++++|+.+-+...+ +.||++ -|.-.-.+
T Consensus 758 k~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred hhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHH
Confidence 344567778899988854 23678888899999999998876543 345543 23446678
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC
Q 004610 432 FCNNGDVDKACSVEEHMLEHGV 453 (742)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv 453 (742)
|.++|+-.+|..+++++....+
T Consensus 827 fhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHhcchHHHHHHHHHhhhhhh
Confidence 9999999999999998875543
No 237
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.11 E-value=2e+02 Score=27.24 Aligned_cols=100 Identities=8% Similarity=0.055 Sum_probs=71.0
Q ss_pred HHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---C--CCChhhHHHHHHHHHHcCC-HHHHHHHHH
Q 004610 375 YEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLG---I--NPRLRSYGPALSVFCNNGD-VDKACSVEE 446 (742)
Q Consensus 375 f~~M~~~g~~pd~--~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g---~--~Pd~~ty~~lI~~~~~~g~-~~~A~~l~~ 446 (742)
...|.+.+..++. ...|+++.-.+..+.......+++.+..-. + .-+-.+|.+++.+..+..- ---+..+|.
T Consensus 25 ~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 25 LPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred HHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH
Confidence 3445666666665 446888888888888888888877774221 0 2455678889998877666 445678888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004610 447 HMLEHGVYPEEPELEALLRVSVEAGKGD 474 (742)
Q Consensus 447 ~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (742)
-|.+.+.+++..-|..||.++.+.-..+
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 8888888999999999998876653333
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=53.36 E-value=1.4e+02 Score=28.85 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=39.1
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~ 443 (742)
..|++++|..+|.-+...+. -|..-|..|-.++-..+++++|...|...-..+. -|.+.+--+=.+|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 45666666666665554321 1222233444444445556666666555433321 111112222334455566666665
Q ss_pred HHHHHHH
Q 004610 444 VEEHMLE 450 (742)
Q Consensus 444 l~~~M~~ 450 (742)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555443
No 239
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=53.31 E-value=5.4e+02 Score=32.59 Aligned_cols=100 Identities=21% Similarity=0.168 Sum_probs=53.9
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVG----RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li----~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (742)
++|.+++|+.++ .|+...+..+. +-+...+.+++|--+|+..-+. .-.|.+|-.+|++.
T Consensus 920 kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 920 KHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWR 982 (1265)
T ss_pred hcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHH
Confidence 444555554443 34444444444 3334466666666666543221 34567777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 440 KACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~t--y~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
+|..+...|... -|... -..|+.-+...++.-+|.+++.+-
T Consensus 983 ~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 983 EALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 777777665411 12221 145566666666666666666555
No 240
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=52.49 E-value=1.4e+02 Score=31.62 Aligned_cols=100 Identities=8% Similarity=0.092 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 004610 368 FQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVE 445 (742)
Q Consensus 368 ~~~A~~lf~~M~~-~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~ 445 (742)
...-.|+.+-+.. .|..++..+..++|+.++..+++..-+++++..... +-.-|.+-|...|......|+..-...+.
T Consensus 182 l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 182 LNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred hhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3334556665554 356788889999999999999999999999886654 56678999999999999999987666665
Q ss_pred HH-----HHHCCCCCCHHHHHHHHHHH
Q 004610 446 EH-----MLEHGVYPEEPELEALLRVS 467 (742)
Q Consensus 446 ~~-----M~~~gv~pd~~ty~~Li~~~ 467 (742)
++ +.+.|+..+...-.+|-..+
T Consensus 262 ~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 262 DDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred hCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 43 23445666655544444433
No 241
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=52.42 E-value=2.5e+02 Score=29.72 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=78.8
Q ss_pred CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCChhhHH
Q 004610 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~---~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
|...|-- |=..|...|+++.|..-|..-.+-- .+|...+..+-.++....+ -.++.++|+++.... .-|+++-.
T Consensus 155 d~egW~~-Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDL-LGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHH-HHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 4445555 7789999999999999998876531 2455566666665554332 447999999987652 23555666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004610 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (742)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (742)
-|=.++...|+..+|...|+.|.+.. |....+..+|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 66667889999999999999999764 444455555543
No 242
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.42 E-value=80 Score=29.78 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh-HHHHHHHHhhch
Q 004610 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (742)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~~~ 505 (742)
.+.+.+.+.|++++..= ..+++.+...+..-.|.++++++++...++++. .|+++..+-..|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 45566677888776543 467777788877789999999999985566666 477777665443
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.91 E-value=3.2e+02 Score=29.04 Aligned_cols=140 Identities=10% Similarity=0.098 Sum_probs=89.3
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (742)
......|++.+|..+|+......- -+...--.|+++|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 355678899999999988776432 2344566789999999999999999998765422222222222344444444444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh-HHHHHHHHhh
Q 004610 440 KACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFN 503 (742)
Q Consensus 440 ~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~ 503 (742)
+...+-.+.-. .| |...--.|-..|...|+.++|.+.|-.+..+.++...+ ....+...|.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 44444444332 35 55555567778889999999998887777765565555 3333444443
No 244
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.80 E-value=19 Score=33.36 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHH
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~ 201 (742)
+.+.|...+|..||..|.+.|.-|+. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--------W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--------WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--------HHHHHHHh
Confidence 44778899999999999888776655 99998765
No 245
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=51.73 E-value=94 Score=29.02 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=27.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~ 418 (742)
-++...+.|+-|.-.++..++.+.+ .++....-.+..+|.+.|+..+|.+++.+--+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445555555555555555544322 34444445555555555555555555555555543
No 246
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=51.35 E-value=35 Score=23.58 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~ 414 (742)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456667777777777777777776654
No 247
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.45 E-value=1e+02 Score=36.65 Aligned_cols=105 Identities=10% Similarity=0.079 Sum_probs=65.8
Q ss_pred HHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 370 RGFEIYEKMCL-DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 370 ~A~~lf~~M~~-~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
+-+.+++.+.. .|..-.-.|.+--+.-+...|+-.+|.++-.+.+ .||.+-|--=|.+++..+++++-+++-+.+
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 33444555543 2333334455555666667777777777765542 377777777777777777777766665554
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
. ...-|.-.+.+|.+.|+.+||.+++.+..
T Consensus 742 k------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 742 K------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred C------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 3 13445556777777788888877777663
No 248
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.23 E-value=1.4e+02 Score=28.14 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=60.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-----PMNEASLTAVGRMAMSMGD-GDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~-----~pd~~tyn~Li~~~~~~g~-~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (742)
+++-....+.+.....+++.+..-.. ..|..+|.+++++.+...- ---+..+|+.|++.+.+++..-|..+|.+
T Consensus 45 iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~ 124 (145)
T PF13762_consen 45 ILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKA 124 (145)
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66766777777777777777642110 2455679999999977766 44678999999998899999999999998
Q ss_pred HHHcC
Q 004610 432 FCNNG 436 (742)
Q Consensus 432 ~~~~g 436 (742)
+.+.-
T Consensus 125 ~l~g~ 129 (145)
T PF13762_consen 125 ALRGY 129 (145)
T ss_pred HHcCC
Confidence 77653
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.03 E-value=2.6e+02 Score=29.28 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCh-hhHH
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE----VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRL-RSYG 426 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g----~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~-~ty~ 426 (742)
-|+. -++. .+.|++..|..-|..-.+.. ..||. +=-|-..+...|+.++|-.+|..+.+. +-.|.. ...-
T Consensus 144 ~Y~~-A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNA-ALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHH-HHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 5777 4444 47888999999999988753 23444 444788999999999999999998765 222332 3444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 427 PALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
-|=....+.|+.++|...|++..+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555677889999999999999875
No 250
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=48.80 E-value=84 Score=27.85 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004610 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (742)
Q Consensus 371 A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (742)
..+-++.+-...+.|+.....+.+++|-+..++..|.++|+-++.+ +.+....|..+|
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 3344444445555666666666666666666666666666665533 222222555444
No 251
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=48.10 E-value=1.1e+02 Score=26.97 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=14.6
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 416 ~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
..+.|+...-.+.+.||-|.+++..|.++++-.
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 252
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=47.77 E-value=1.5e+02 Score=29.48 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHH-HHHHcCCHH--HHHH
Q 004610 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALS-VFCNNGDVD--KACS 443 (742)
Q Consensus 369 ~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~-~~~~~g~~~--~A~~ 443 (742)
++|+++-.++. -++..+-...+.|++++|.+-++++.+. .++--...|.-+.. ++|..+.-+ +|..
T Consensus 20 EE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 45566655553 3555566667888899888888877543 23334455666666 678777544 5555
Q ss_pred HHHHHHHCCCCCCHHH----HHHHHHHH--------------HHcCCHHHHHHHHHHHHH
Q 004610 444 VEEHMLEHGVYPEEPE----LEALLRVS--------------VEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 444 l~~~M~~~gv~pd~~t----y~~Li~~~--------------~~~g~~~~A~~ll~~M~~ 485 (742)
++.-.... ..|...- +-..|.|. .+.|+++.|.++++-|..
T Consensus 91 l~~~l~~~-~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDG-RLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcC-CCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55544433 3444331 22233333 356778888888777754
No 253
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.69 E-value=55 Score=24.50 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004610 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (742)
Q Consensus 199 ~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~ 235 (742)
-..-+.|-+.++..++++|.+.|+..+...|..++..
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3445778889999999999999999999999988864
No 254
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.99 E-value=3.9e+02 Score=28.59 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=40.1
Q ss_pred ecccccccccCCCchhhhhhhccccccccccccccchhhhHHHhhccCcccCcccccccc
Q 004610 81 TRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMSSGNSSLRSKD 140 (742)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (742)
.+-..+++.-+.+..+..+.... +..++.+...+|....|+-+-.|++.....+.....
T Consensus 31 f~da~vq~~~~~~gdle~vak~l-dssg~~l~~~rYgd~~fdil~~gg~~~pg~~~sddg 89 (412)
T KOG2297|consen 31 FRDAVVQGLEDNAGDLELVAKSL-DSSGNDLDYRRYGDILFDILFAGGRLQPGGVKSDDG 89 (412)
T ss_pred HHHHHHHHHHhcCccHHHHHHHH-HhccccccHHHHHHHHHHHHHHhcccCCCCcccccc
Confidence 34455667777777777766665 445577888899999999998887766554443333
No 255
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.43 E-value=2.8e+02 Score=32.04 Aligned_cols=142 Identities=15% Similarity=0.027 Sum_probs=86.6
Q ss_pred HHHHHHHHHHH-HcC--CCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccc
Q 004610 208 MGAIRLYDKAQ-REG--IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG 284 (742)
Q Consensus 208 ~~A~~lf~~M~-~~G--i~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~l 284 (742)
.+..++|-++. ..+ +.||+.+--.+|.- -.|.+++|.+-|. .-+.. ...|...||=|
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~------------ls~efdraiDcf~------~AL~v--~Pnd~~lWNRL 470 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYN------------LSGEFDRAVDCFE------AALQV--KPNDYLLWNRL 470 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHh------------cchHHHHHHHHHH------HHHhc--CCchHHHHHHh
Confidence 44455565555 345 33444433333333 5588999999995 11222 11266679988
Q ss_pred cccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHh
Q 004610 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (742)
Q Consensus 285 I~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (742)
=.. ++...+.++|...|++-++. .|+-+= +-|| |==.|..
T Consensus 471 GAt------LAN~~~s~EAIsAY~rALqL--qP~yVR------------------------------~RyN--lgIS~mN 510 (579)
T KOG1125|consen 471 GAT------LANGNRSEEAISAYNRALQL--QPGYVR------------------------------VRYN--LGISCMN 510 (579)
T ss_pred hHH------hcCCcccHHHHHHHHHHHhc--CCCeee------------------------------eehh--hhhhhhh
Confidence 777 88889999999999887664 343211 1122 3335678
Q ss_pred hcCHHHHHHHHHH---HHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004610 365 KYAFQRGFEIYEK---MCLD------EVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (742)
Q Consensus 365 ~g~~~~A~~lf~~---M~~~------g~~pd~~tyn~Li~~~~~~g~~~~A~~l 409 (742)
.|.+++|.+.|-. |... +..++...|.+|=.++...++.|.+.+.
T Consensus 511 lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 511 LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8899999887754 4333 2234566788777777777777754443
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=46.39 E-value=1.5e+02 Score=28.62 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=62.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004610 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN-NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (742)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~-~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (742)
-+-..|++++|..+|.-+...+ |.-.-|..-+.+++. .++.++|..+|......+. -|...+-.+=.+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3447899999999999987754 233335444555554 6899999999987765542 22333334456778899999
Q ss_pred HHHHHHHHHHHc
Q 004610 475 RVYYLLHKLRTS 486 (742)
Q Consensus 475 ~A~~ll~~M~~~ 486 (742)
.|...|....++
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999988775
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=46.28 E-value=3.7e+02 Score=28.13 Aligned_cols=169 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHHcC--CCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 296 SSYRFDDLDSTFNEKENLG--QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 296 ~~g~~~~A~~lf~~M~~~G--~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
+.|+++.|..++.+....- ..|+..-+- -.+.||. -.+.+.+..+++.|..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~L--------------------------a~~~yn~-G~~l~~~~~~~~~a~~ 57 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEEL--------------------------ARVCYNI-GKSLLSKKDKYEEAVK 57 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHH--------------------------HHHHHHH-HHHHHHcCCChHHHHH
Q ss_pred HHHHHHhC--------CCCCCH-----HHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 374 IYEKMCLD--------EVPMNE-----ASLTAVGRMAMSMGDGD---MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 374 lf~~M~~~--------g~~pd~-----~tyn~Li~~~~~~g~~~---~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
.+++--+- ...|+. .++..|+.+|...+..+ +|..+++.+... ..-...+|-.-|..+-+.++
T Consensus 58 wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~ 136 (278)
T PF08631_consen 58 WLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFD 136 (278)
T ss_pred HHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCC
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVS--VEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~--~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
.+.+.+++.+|+.. +.-....+..++..+ ........|...++++......++++
T Consensus 137 ~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 137 EEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred hhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=46.22 E-value=1.8e+02 Score=36.46 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=50.8
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004610 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (742)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t--yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (742)
+.+|-.+|++++|+.+-.+|... -|... --.|+.-+...++.-+|-++..+-... +.-.+.-||+.-
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 34566677888888877776532 23322 245677777788888888887775433 244566677777
Q ss_pred CHHHHHHHHHH
Q 004610 437 DVDKACSVEEH 447 (742)
Q Consensus 437 ~~~~A~~l~~~ 447 (742)
.+++|..+-..
T Consensus 1041 ~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1041 EWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHh
Confidence 88888776543
No 259
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=46.08 E-value=4.7e+02 Score=29.25 Aligned_cols=276 Identities=11% Similarity=0.026 Sum_probs=152.5
Q ss_pred hcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHc
Q 004610 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLCSS 238 (742)
Q Consensus 163 ~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~~~~~ 238 (742)
.++...|-..+-.... +.-++-|+.-...+-+.+...|+.++|+-.|+..... .|+. ..|..||.
T Consensus 209 ~~~hs~a~~t~l~le~-----~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~---- 277 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHD-----NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG---- 277 (564)
T ss_pred hcccchhhhHHHHHHh-----hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH----
Confidence 3445555555544422 2235557788999999999999999999999987642 2322 23444433
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
..|+.++...+.. .+....+- ....|-.-... +-...+++.|+.+-++-.+. |
T Consensus 278 ---------~eg~~e~~~~L~~-------~Lf~~~~~-ta~~wfV~~~~------l~~~K~~~rAL~~~eK~I~~----~ 330 (564)
T KOG1174|consen 278 ---------QEGGCEQDSALMD-------YLFAKVKY-TASHWFVHAQL------LYDEKKFERALNFVEKCIDS----E 330 (564)
T ss_pred ---------hccCHhhHHHHHH-------HHHhhhhc-chhhhhhhhhh------hhhhhhHHHHHHHHHHHhcc----C
Confidence 3344444333321 00000000 00001111111 22345566666555443332 2
Q ss_pred ccccchhHHhhcccccc-CC------CchhhhhcCCCc-CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHH
Q 004610 319 GHMKLNSQLLDGRSNLE-RG------PDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (742)
Q Consensus 319 ~~ty~~~~li~~~~~~a-~~------~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty 390 (742)
....- +.++.|-...+ .+ -|.+ ...+.| +..+|-. |+..|...|.+.+|.-+-+.-... ++-+..+.
T Consensus 331 ~r~~~-alilKG~lL~~~~R~~~A~IaFR~--Aq~Lap~rL~~Y~G-L~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~L 405 (564)
T KOG1174|consen 331 PRNHE-ALILKGRLLIALERHTQAVIAFRT--AQMLAPYRLEIYRG-LFHSYLAQKRFKEANALANWTIRL-FQNSARSL 405 (564)
T ss_pred cccch-HHHhccHHHHhccchHHHHHHHHH--HHhcchhhHHHHHH-HHHHHHhhchHHHHHHHHHHHHHH-hhcchhhh
Confidence 21111 12333322111 11 1221 122343 5677888 999999999999998765543221 12344455
Q ss_pred HHH-HHHHHHcCC-HHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004610 391 TAV-GRMAMSMGD-GDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (742)
Q Consensus 391 n~L-i~~~~~~g~-~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (742)
+.+ -..|.-... -++|.++++.- ..+.|+-. ..+.+-.-+...|..+.+..+++.-.. ..||...-+.|-+.+
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~--L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKS--LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIM 481 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhh--hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHH
Confidence 544 233333222 35677776642 23556632 223334445667999999999988764 479999999999999
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 004610 468 VEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 468 ~~~g~~~~A~~ll~~M~~ 485 (742)
...+.+.+|++.|..-..
T Consensus 482 ~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 999999999999877644
No 260
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.44 E-value=66 Score=24.08 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=16.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (742)
+.|-+.++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555555444
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.17 E-value=4.1e+02 Score=28.29 Aligned_cols=112 Identities=12% Similarity=0.028 Sum_probs=69.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g 436 (742)
|...|...|+.+.|..++..+...--.........-|..+.+.....+..++-.+.-.. | |...=-.+-..+...|
T Consensus 174 la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g 250 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVG 250 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 77889999999999999999876543333344344455555555555555555554433 5 4444444566677889
Q ss_pred CHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCC
Q 004610 437 DVDKACSVEEHMLEHGV-YPEEPELEALLRVSVEAGK 472 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv-~pd~~ty~~Li~~~~~~g~ 472 (742)
+.+.|.+.+-.+..+.. .-|-..=..||..+.--|.
T Consensus 251 ~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 251 RNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 99998886666654421 2233444556665555553
No 262
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=44.82 E-value=50 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~ 219 (742)
.+++.|-..|...|++++|+.++.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 6789999999999999999999998863
No 263
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=44.29 E-value=1.2e+02 Score=26.64 Aligned_cols=63 Identities=11% Similarity=-0.008 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004610 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (742)
Q Consensus 367 ~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (742)
+.=++.+-++.+-...+.|+....++.+++|-+..++..|.++|+-.+.+ +..+...|-.++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 33455666777777889999999999999999999999999999987744 2224556776654
No 264
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=44.03 E-value=3.3e+02 Score=26.92 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=40.5
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~--~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~ 416 (742)
..+...|++++|.+.|+++....- +--....-.++.++.+.|+.++|...+++..+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678999999999999987421 112234456788888999999999999997754
No 265
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.87 E-value=1.7e+02 Score=29.34 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=48.4
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHHcCCHHH
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (742)
+.|+ +.|.+.|-.+...+..-+....-.|..-|. ..+.++|..++....+. +-.+|...+.+|...|-+.|+.+.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 567777777777765555444444444443 56677777777665543 235667777777777777777776
Q ss_pred HH
Q 004610 441 AC 442 (742)
Q Consensus 441 A~ 442 (742)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 65
No 266
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=43.05 E-value=4.7 Score=32.07 Aligned_cols=41 Identities=24% Similarity=0.593 Sum_probs=29.8
Q ss_pred cchhhhhhhhhcCCceEEeCcccccccccccCCchhhhhhhccee
Q 004610 693 VCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 737 (742)
Q Consensus 693 ~~~~~~l~a~~~~~~~~vs~d~~rdh~~~l~~~~~f~~w~~~h~~ 737 (742)
-|..=|.-+|-..+++=++.|+-|.|++.+ -+.-||.+||-
T Consensus 15 NCLskWy~~aA~~~g~~~~~d~ARE~vYGM----Py~eWK~~~Q~ 55 (68)
T PF06844_consen 15 NCLSKWYREAAEERGIEMDKDEAREIVYGM----PYDEWKAKHQT 55 (68)
T ss_dssp HHHHHHHHHHHHHCT----HHHHHHHHHSS-----HHHHCHCH--
T ss_pred HHHHHHHHHHHHhcCCcCCHHHHHHHHhCC----CHHHHHHHHCC
Confidence 367778888888899999999999999966 68999999994
No 267
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=42.58 E-value=4.5e+02 Score=28.03 Aligned_cols=57 Identities=7% Similarity=-0.027 Sum_probs=36.6
Q ss_pred HHHHHHHHHHH------hcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhh
Q 004610 192 FQLRVELDMCS------KRG-----DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (742)
Q Consensus 192 ~tyn~lI~~~~------~~g-----~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~ 260 (742)
.+|.+.|.++. +.| --..|+++|.-+....-+ .++=+.+|.++- ...+..+|...|.
T Consensus 123 ee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~ie~lw----------pe~D~kka~s~lh 190 (361)
T COG3947 123 EESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAIEALW----------PEKDEKKASSLLH 190 (361)
T ss_pred hccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHHHHHc----------cccchhhHHHHHH
Confidence 56666666665 122 247899999998865322 355667788877 5566666666653
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=42.56 E-value=50 Score=23.80 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~~~ 416 (742)
+|..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666667777777777777766554
No 269
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=42.19 E-value=3.4e+02 Score=33.62 Aligned_cols=124 Identities=10% Similarity=-0.009 Sum_probs=72.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS--VFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~--~~~~~ 435 (742)
|=..|+..-++.+|...|++..+-. .-|...+..+.+.|+...++++|+.+.-.--+. -..-...+|-+-. .|.+.
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccccCc
Confidence 5456666667788888888766543 235667788888889999999888883221111 1111112221111 23445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
++..+|..-|+.-.... .-|...|..|..+|.+.|+...|.++|.+..
T Consensus 576 ~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred cchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 56666666666555332 2355566667777777777777777776553
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=41.87 E-value=5.8e+02 Score=29.11 Aligned_cols=118 Identities=12% Similarity=0.111 Sum_probs=73.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHH
Q 004610 297 SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (742)
Q Consensus 297 ~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (742)
....+.|.+++.++..+ -|+..-|. +..| ..+...|++++|.+.|+
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl---~~~g-----------------------------R~~~~~g~~~~Ai~~~~ 291 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFL---FFEG-----------------------------RLERLKGNLEEAIESFE 291 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHH---HHHH-----------------------------HHHHHhcCHHHHHHHHH
Confidence 55678899999988775 45555552 1111 34556889999999999
Q ss_pred HHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHHcCCH-------HHHHHHH
Q 004610 377 KMCLDEV---PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDV-------DKACSVE 445 (742)
Q Consensus 377 ~M~~~g~---~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-~~~~g~~-------~~A~~l~ 445 (742)
+.....- +.....|=-+.-.+.-..++++|.+.|..+.+..- -..-+|.-+..+ +...|+. ++|.++|
T Consensus 292 ~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~ 370 (468)
T PF10300_consen 292 RAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELF 370 (468)
T ss_pred HhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHH
Confidence 7553211 11223333445567788999999999999987632 233333332222 3335766 7777777
Q ss_pred HHHH
Q 004610 446 EHML 449 (742)
Q Consensus 446 ~~M~ 449 (742)
.+..
T Consensus 371 ~~vp 374 (468)
T PF10300_consen 371 RKVP 374 (468)
T ss_pred HHHH
Confidence 7654
No 271
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=41.37 E-value=2e+02 Score=25.50 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..+-+..+....+.|+.....+.|++|.|.+++..|.++|.-++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555555544
No 272
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.61 E-value=23 Score=32.85 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=26.5
Q ss_pred HhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004610 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (742)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~ 397 (742)
-+.|.-.+|..+|.+|..+|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456666799999999999999985 88888754
No 273
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=40.60 E-value=8.3e+02 Score=30.56 Aligned_cols=191 Identities=12% Similarity=0.111 Sum_probs=102.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC
Q 004610 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (742)
Q Consensus 197 lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~ 276 (742)
.+-+|.+. +...|+..|-+..+..... ...|..|=..|+ ..-+..+|..-|+ .-.+. +-.
T Consensus 465 ~a~~~~rK-~~~~al~ali~alrld~~~-apaf~~LG~iYr----------d~~Dm~RA~kCf~-------KAFeL-Dat 524 (1238)
T KOG1127|consen 465 VALGCMRK-NSALALHALIRALRLDVSL-APAFAFLGQIYR----------DSDDMKRAKKCFD-------KAFEL-DAT 524 (1238)
T ss_pred HHHHHhhh-hHHHHHHHHHHHHhcccch-hHHHHHHHHHHH----------HHHHHHHHHHHHH-------HHhcC-Cch
Confidence 34444443 4677777776665443221 246667766677 4446677777774 22211 111
Q ss_pred cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHH
Q 004610 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (742)
Q Consensus 277 ~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (742)
+...+-...+. |+....+++|..+.- ..+...-..+-. ....++|
T Consensus 525 daeaaaa~adt------yae~~~we~a~~I~l---~~~qka~a~~~k----------------~nW~~rG---------- 569 (1238)
T KOG1127|consen 525 DAEAAAASADT------YAEESTWEEAFEICL---RAAQKAPAFACK----------------ENWVQRG---------- 569 (1238)
T ss_pred hhhhHHHHHHH------hhccccHHHHHHHHH---HHhhhchHHHHH----------------hhhhhcc----------
Confidence 44446566666 888888888887621 111110000000 0000011
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH--HHHHH
Q 004610 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL--SVFCN 434 (742)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI--~~~~~ 434 (742)
-.|-+.++...|..-|+.-.... +-|...|..|..+|..+|+...|.++|.+... +.|+. +|.-.- ..-|-
T Consensus 570 ---~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 570 ---PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECD 642 (1238)
T ss_pred ---ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHH
Confidence 12345556666666666554432 34667788888888888888888888876433 33432 222221 12456
Q ss_pred cCCHHHHHHHHHHHH
Q 004610 435 NGDVDKACSVEEHML 449 (742)
Q Consensus 435 ~g~~~~A~~l~~~M~ 449 (742)
.|..++|...++...
T Consensus 643 ~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 643 NGKYKEALDALGLII 657 (1238)
T ss_pred hhhHHHHHHHHHHHH
Confidence 677777777776654
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=40.42 E-value=62 Score=23.28 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+|..|-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667778888999999999999888776
No 275
>PHA03100 ankyrin repeat protein; Provisional
Probab=40.06 E-value=3.9e+02 Score=30.07 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=67.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-cc--cCCCchhhhhcCCCcCHHhh--HHHHHHHHHhhcCHHH
Q 004610 296 SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-NL--ERGPDDQSRKKDWSIDNQDA--DEIRLSEDAKKYAFQR 370 (742)
Q Consensus 296 ~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-~~--a~~~~~~m~~~g~~pd~~ty--n~~lI~~~~k~g~~~~ 370 (742)
..|..+- ++.+.+.|..++.......+.++..+ .. ...+...+.+.|..++.... .+ .+...+..|..+
T Consensus 117 ~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~t-pL~~A~~~~~~~- 190 (480)
T PHA03100 117 KSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYT-PLHIAVEKGNID- 190 (480)
T ss_pred ccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCC-HHHHHHHhCCHH-
Confidence 4555444 44455677766554443112222222 11 23345556666666544322 12 345555666543
Q ss_pred HHHHHHHHHhCCCCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHHcCCHH
Q 004610 371 GFEIYEKMCLDEVPMNEAS--------LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVD 439 (742)
Q Consensus 371 A~~lf~~M~~~g~~pd~~t--------yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~---ty~~lI~~~~~~g~~~ 439 (742)
+.+.+.+.|..|+... +.+.+...+..|. ...++++.+.+.|..++.. -.++ +...+..|+.+
T Consensus 191 ---iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~Tp-L~~A~~~~~~~ 264 (480)
T PHA03100 191 ---VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTP-LHYAVYNNNPE 264 (480)
T ss_pred ---HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHH
Confidence 3344444555544221 1344445555555 1123444445566554432 2333 34445566643
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 004610 440 KACSVEEHMLEHGVYPEEP 458 (742)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ 458 (742)
+++.+.+.|..|+..
T Consensus 265 ----iv~~Ll~~gad~n~~ 279 (480)
T PHA03100 265 ----FVKYLLDLGANPNLV 279 (480)
T ss_pred ----HHHHHHHcCCCCCcc
Confidence 444455566555443
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=39.66 E-value=2.7e+02 Score=32.99 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
-.+-+++.+.|.-++|.+.|-+-- .| -+-+..|..-.++.+|.++-+..
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556666777766666553321 12 23455666666777777765544
No 277
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=38.85 E-value=3.1e+02 Score=25.67 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=59.7
Q ss_pred HHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCh--hhHHHHHHHHHHcCC
Q 004610 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRL--RSYGPALSVFCNNGD 437 (742)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~--~ty~~lI~~~~~~g~ 437 (742)
+.+..|+++.|++.|.+-..- ++-+...||.-..++--.|+.++|++=+++-.+. |-+-.. ..|.--=.-|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 356788999999999876653 2446778999999999999999998888776653 322111 111111112344577
Q ss_pred HHHHHHHHHHHHHCC
Q 004610 438 VDKACSVEEHMLEHG 452 (742)
Q Consensus 438 ~~~A~~l~~~M~~~g 452 (742)
-+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 788887777666555
No 278
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=38.85 E-value=1.9e+02 Score=29.40 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=8.1
Q ss_pred hhhhhcCCceEEeCcc
Q 004610 699 LYAAIKFKCLLVTNDE 714 (742)
Q Consensus 699 l~a~~~~~~~~vs~d~ 714 (742)
+|-++-.+|++.+.++
T Consensus 239 l~~g~Gqr~~ltd~ge 254 (273)
T COG4455 239 LATGFGQRCFLTDDGE 254 (273)
T ss_pred hhcccccEEEEecCCc
Confidence 4444445555555544
No 279
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.18 E-value=3.8e+02 Score=29.68 Aligned_cols=78 Identities=13% Similarity=-0.025 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHH-HHHH
Q 004610 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKW 501 (742)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~ 501 (742)
.+++-|-.+|.+.++..+|.+.-+..+..+ .+|+-..=-==.+|...|+++.|...|+++.+. .|+.-.... |..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 344555566666677777766666655443 233333222234556667777777777777665 444334433 4444
Q ss_pred hh
Q 004610 502 FN 503 (742)
Q Consensus 502 ~~ 503 (742)
.+
T Consensus 335 ~~ 336 (397)
T KOG0543|consen 335 KQ 336 (397)
T ss_pred HH
Confidence 43
No 280
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.02 E-value=69 Score=26.61 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=24.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004610 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (742)
Q Consensus 393 Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (742)
.+...+..|+.+ +++.+.+.|..|+.. .-.+.+...+..|+.+ +.+-+.+.|..++
T Consensus 29 ~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 29 ALHYAAENGNLE----IVKLLLENGADINSQDKNGNTALHYAAENGNLE----IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTTHH----HHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH----HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCHH----HHHHHHHhcccccccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCC
Confidence 444455556543 444444456555543 1122333344555543 3444445555544
No 281
>PRK11906 transcriptional regulator; Provisional
Probab=36.56 E-value=3.4e+02 Score=30.70 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=70.2
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHH
Q 004610 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKAC 442 (742)
Q Consensus 366 g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~~~g~~~~A~ 442 (742)
....+|.++-+.-.+.+ .-|......+-.+..-.|+.+.|..+|++-... .|| ...|..++.. -+|+.++|.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~--~~G~~~~a~ 392 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHF--HNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHH--HcCCHHHHH
Confidence 34556667666666554 346666666666667788899999999886543 455 4555555544 369999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 443 SVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 443 ~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
+.+++-.+. -.+.-....--.|+.|+..+ +++|.+++-+-
T Consensus 393 ~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 393 ICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 988884432 12222333344455666655 67777776543
No 282
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=36.49 E-value=5e+02 Score=27.34 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=55.7
Q ss_pred HHHHHH-hhcCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004610 358 RLSEDA-KKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (742)
Q Consensus 358 lI~~~~-k~g~~~~A~~lf~~M~~~g~----~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (742)
++...| ..+..+.|.+.|++....+. .++...-..++....+.|..++-..+++..... ++..--..+|.++
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aL 211 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSAL 211 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhh
Confidence 455555 23346778888888776422 345556666777777777766655555554433 3566667788888
Q ss_pred HHcCCHHHHHHHHHHHHHCC
Q 004610 433 CNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~g 452 (742)
+...+.+...++++.....+
T Consensus 212 a~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 212 ACSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp TT-S-HHHHHHHHHHHHCTS
T ss_pred hccCCHHHHHHHHHHHcCCc
Confidence 88888777777777777654
No 283
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=35.67 E-value=3.8e+02 Score=25.19 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=64.9
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC----------------CCChhhHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GI----------------NPRLRSYGP 427 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~-g~----------------~Pd~~ty~~ 427 (742)
.|.+++..++..+...+. +..-||-+|--....-+.+-..++++.+-+. .+ .-+..-...
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ 91 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL 91 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence 355677788888776543 3444554444444444444455555443211 00 112233455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.|+.+...|.-+.-.+++.++... -.++....-.+-.+|.+-|...++-+++.+--++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 677777777777777777777653 3567777777888888888888888888777666
No 284
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.13 E-value=6.2e+02 Score=28.07 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=80.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHh-----CCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCL-----DEVP---------MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~-----~g~~---------pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (742)
+.|.+.|++..|..-|+.... .+.. .-..+++.|.-+|.+.+++.+|++.-+.....+ .+|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 467889999999888776332 1111 223567888889999999999998887766542 2233222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCH-HHHHHHHHHHHHc
Q 004610 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKG-DRVYYLLHKLRTS 486 (742)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~-~~A~~ll~~M~~~ 486 (742)
--==.+|...|+++.|+..|+.+++. .|+-..-..=|..| -+.... ++..++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22234566678999999999999864 67655554444443 333333 3446777777554
No 285
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=33.97 E-value=5.4e+02 Score=29.26 Aligned_cols=123 Identities=12% Similarity=0.070 Sum_probs=84.9
Q ss_pred HHHHHhhcCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 359 LSEDAKKYAFQRG-FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 359 I~~~~k~g~~~~A-~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
|.--...|++-.| .++|+-++...-.|+.+-.-+.| +...|+++.+...+....+. +.....+--+++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 3444456776665 56788888776678877666655 45789999999998875543 44566777888999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
+++|..+-+.|....++-.++. ..--..--.-|-+|+++-.++++-.
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~-~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVL-TVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHHhccccCChhhe-eeecccHHHHhHHHHHHHHHHHHhc
Confidence 9999999999987776533222 1111112345677888888777643
No 286
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=32.70 E-value=2.2e+02 Score=29.00 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=46.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALS 430 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~ 430 (742)
.|+.+.+.+.+.+|+.+..+=.+.. +-|.-+=-.|+..+|-.|++++|..-++-.-.. ...+-..+|..+|.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4566777777888877776655542 345556667778888888888876655544322 24455666766665
No 287
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.38 E-value=8.6e+02 Score=28.30 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=78.6
Q ss_pred HHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHHcCCHH
Q 004610 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVD 439 (742)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~~~g~~~ 439 (742)
|--.|.+++|.+.|+...... +-|..+||-|=..++...+-++|..-+.+..+ ++|+- +=||.-|. |...|.++
T Consensus 440 y~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS-~mNlG~yk 515 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGIS-CMNLGAYK 515 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhh-hhhhhhHH
Confidence 445688999999998877643 34778899998888888889999999988664 45653 45665554 78889999
Q ss_pred HHHHHHHHHH---HC------CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004610 440 KACSVEEHML---EH------GVYPEEPELEALLRVSVEAGKGDRVYY 478 (742)
Q Consensus 440 ~A~~l~~~M~---~~------gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (742)
+|.+.|-+.+ .+ +..++...|.+|=.++.-.++.|-+.+
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9888775433 33 122345577777666666666654433
No 288
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.33 E-value=2.4e+02 Score=25.14 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 460 LEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56777777777777777777777765
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=32.21 E-value=3.1e+02 Score=27.49 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=58.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCH
Q 004610 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPEEPELEALLRVSVEAGKG 473 (742)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~---gv~pd~~ty~~Li~~~~~~g~~ 473 (742)
..+.|+ ++|.+.|-.+...+..-+...--.| ..|--..+.++|..++.+..+. +-.+|...+.+|...+-+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 345555 4588888888888765555555444 4444578899999999887754 4478899999999999999999
Q ss_pred HHHH
Q 004610 474 DRVY 477 (742)
Q Consensus 474 ~~A~ 477 (742)
+.|+
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9886
No 290
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=31.99 E-value=7.4e+02 Score=27.41 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=23.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004610 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (742)
Q Consensus 187 ~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~ 220 (742)
..|| +..|.|++ |-...+++.-+++.+.|...
T Consensus 139 ls~d-iv~~lllS-yRdiqdydamI~Lve~l~~~ 170 (374)
T PF13281_consen 139 LSPD-IVINLLLS-YRDIQDYDAMIKLVETLEAL 170 (374)
T ss_pred cChh-HHHHHHHH-hhhhhhHHHHHHHHHHhhcc
Confidence 4566 44455554 88888999999999999854
No 291
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.77 E-value=8.5e+02 Score=28.07 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=53.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHH-------------------------HHHHHcCCHHHHHHHHHHHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG-------------------------RMAMSMGDGDMAFDMVKRMK 414 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li-------------------------~~~~~~g~~~~A~~l~~~M~ 414 (742)
+.|.+.++.+.|...|.+-...-..||..+=..-. ..+.+.|++..|.+.+.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 36667778888888887765554445443321111 14456777777777777766
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 415 SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 415 ~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
+.. .-|.+.|+----+|.+.|.+..|..=-+.-
T Consensus 386 kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 386 KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 653 445666776666777777776666544333
No 292
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=30.98 E-value=7.3e+02 Score=28.49 Aligned_cols=74 Identities=9% Similarity=-0.051 Sum_probs=52.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHH
Q 004610 393 VGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPELEALLRV 466 (742)
Q Consensus 393 Li~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~~ty~~Li~~ 466 (742)
|..++-+.|+.+||.++|++|.+.- ..-+......||.++...+...++..++.+-.+-.. +.-..+|++.+--
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 4555558899999999999997652 222344556699999999999999999988654322 1234567765433
No 293
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.78 E-value=1.6e+02 Score=28.97 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.|+..+|..++..+...|+.++|.+++.++..-
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555555555555555555555555555444
No 294
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.64 E-value=84 Score=33.39 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=37.3
Q ss_pred CCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004610 184 SKKDRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV 231 (742)
Q Consensus 184 ~~~~~P~~~t-yn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~ 231 (742)
...+.||..+ ||..|....+.||+++|+.|.+|.++.|+.--..+|-.
T Consensus 249 ~~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 249 SEPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CCccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3445566554 67999999999999999999999999998654444433
No 295
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=30.57 E-value=49 Score=32.02 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=27.8
Q ss_pred CeeeeCCCCCCCCccCCcccchhhhhhhhhc--CCceEEeCccc-ccccc----cccCCchhhhhhh
Q 004610 674 DALYATPTGSNDDCTMDNNVCFRYWLYAAIK--FKCLLVTNDEM-RDHTF----QLLGNDFFPRWKE 733 (742)
Q Consensus 674 ~~~~~~~~~~~dd~~~~~~~~~~~~l~a~~~--~~~~~vs~d~~-rdh~~----~l~~~~~f~~w~~ 733 (742)
..+|+-...+-||+. . =.++..-. .++.|||.|.+ +.+.+ .-++.+.|.+|-.
T Consensus 69 ~Vvft~~~~tAD~~I----e---~~v~~~~~~~~~v~VVTSD~~iq~~~~~~GA~~iss~ef~~~l~ 128 (166)
T PF05991_consen 69 EVVFTKEGETADDYI----E---RLVRELKNRPRQVTVVTSDREIQRAARGRGAKRISSEEFLRELK 128 (166)
T ss_pred EEEECCCCCCHHHHH----H---HHHHHhccCCCeEEEEeCCHHHHHHHhhCCCEEEcHHHHHHHHH
Confidence 455655457888880 0 11111111 47899999965 44443 2233455555543
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.11 E-value=4.6e+02 Score=30.72 Aligned_cols=101 Identities=16% Similarity=0.211 Sum_probs=74.4
Q ss_pred HHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 004610 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (742)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A 441 (742)
..+.|+++.|.++..+. -++.-|-.|-++..+.|++..|.+.|..-. -|..|+-.+...|+.+.-
T Consensus 647 al~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHH
Confidence 34667777777666553 256789999999999999999999887643 356788888888988776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
..+-..-.+.|. .|.-+-+|...|+++++.+++-+-
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 666666666663 245556677889999999887554
No 297
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=30.07 E-value=80 Score=19.98 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 004610 392 AVGRMAMSMGDGDMAFDMVK 411 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~ 411 (742)
.+-..+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34444555555555555443
No 298
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.68 E-value=88 Score=23.08 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=12.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 004610 393 VGRMAMSMGDGDMAFDMVKRMKS 415 (742)
Q Consensus 393 Li~~~~~~g~~~~A~~l~~~M~~ 415 (742)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555443
No 299
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.02 E-value=63 Score=30.64 Aligned_cols=57 Identities=25% Similarity=0.451 Sum_probs=40.9
Q ss_pred eecCCCccccccccc---------------ccccCCHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHhhcCC
Q 004610 548 TVGGDALCKCCGEKL---------------AIIDLDPIETEKFAESVASIAIKR-ERNSSFQKFQKWLDYYGP 604 (742)
Q Consensus 548 ~v~~~G~C~~c~~~L---------------~~i~l~~~e~~~l~~~i~~~a~~~-~~~~~~~~F~~~l~~~~p 604 (742)
+.....+|..||... ..-.|+++|.+.|.+.+-.+.... .++-+.-+|++++.+.+.
T Consensus 64 ~~~~PsYC~~CGkpyPWt~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~g~ 136 (158)
T PF10083_consen 64 HYEAPSYCHNCGKPYPWTENALEAANELIEEDEELSPDEKEQFKESLPDLTKDTPKTKVAATRFKKILSKAGS 136 (158)
T ss_pred CCCCChhHHhCCCCCchHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHHhH
Confidence 344568999998532 245678889999998888877653 234667789999888653
No 300
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=28.54 E-value=1.3e+02 Score=27.33 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhCCCCCccEEEeccccc---cCCCCCChhhHHHHHHHHhcCeeeeCCCCCCCCccCCcccchhhhhhhhh
Q 004610 627 VNAVVNGIRQKFPSKKWPLIVLHNRRI---TGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAI 703 (742)
Q Consensus 627 i~~vv~~l~~~~~~~~~~lvvl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~~~~l~a~~ 703 (742)
+..+++-+-..+-.|.++.|+|+.=.. ..+....-.+...++.+.+-+.+=.......-+| |...+-.|=
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~~~~~kvDd~~~F~~L~~l~lIkFi~~~~~~~~-------~~eV~~~Ae 81 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDDGGISKVDDLEAFQFLCDLDLIKFIEKRNRKKW-------FNEVLDEAE 81 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhcccccccccccchHHHHHHHHhcCceeeeccccHHHH-------HHHHHHHHH
Confidence 333333333323368889999976433 3333344566677788888887766656555555 333444455
Q ss_pred cCCceEEeCcccccccc
Q 004610 704 KFKCLLVTNDEMRDHTF 720 (742)
Q Consensus 704 ~~~~~~vs~d~~rdh~~ 720 (742)
+.++++|||.+.|--.+
T Consensus 82 k~~GI~VSs~E~~~~~~ 98 (122)
T PF14626_consen 82 KTHGIFVSSSEYRRRNF 98 (122)
T ss_pred HcCcEEECCHHHhcccc
Confidence 68999999999876555
No 301
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.34 E-value=2.8e+02 Score=24.69 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKS 415 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~ 415 (742)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777766655
No 302
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.10 E-value=2.4e+02 Score=31.84 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=84.9
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhh------ccccccCCCchhhhhcCCCcCHHhh--HHHHHHHHH--
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLD------GRSNLERGPDDQSRKKDWSIDNQDA--DEIRLSEDA-- 363 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~------~~~~~a~~~~~~m~~~g~~pd~~ty--n~~lI~~~~-- 363 (742)
.++.|..+- ++.+.+.|..|+.........++ +.......+...+.+.|..++.... .+ .+...+
T Consensus 42 A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t-pL~~A~~~ 116 (480)
T PHA03100 42 AKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT-PLLYAISK 116 (480)
T ss_pred hhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCc-hhhHHHhc
Confidence 445555544 44455678877765443112222 2222222344555566665543221 12 233333
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCChhhH--HHHHHHHHHcCC
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGD 437 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~t--yn~Li~~~~~~g--~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~~~g~ 437 (742)
..|..+ +++.+.+.|..++... -.+.+..++..| +.+ +++.+.+.|..++.... .+.+...+..|+
T Consensus 117 ~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~ 188 (480)
T PHA03100 117 KSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVEKGN 188 (480)
T ss_pred ccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHHhCC
Confidence 555543 4555556676654332 124566666777 443 45555667766654332 345666777776
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHHcCC--HHHHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPEEPE--------LEALLRVSVEAGK--GDRVYYLLH 481 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~t--------y~~Li~~~~~~g~--~~~A~~ll~ 481 (742)
.+-+. .+.+.|..|+... +.+.+...+..|. .+-+..+++
T Consensus 189 ~~iv~----~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~ 238 (480)
T PHA03100 189 IDVIK----FLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS 238 (480)
T ss_pred HHHHH----HHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH
Confidence 65444 4445565554321 1344444566666 544444433
No 303
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.84 E-value=2.1e+02 Score=28.01 Aligned_cols=60 Identities=17% Similarity=0.054 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 392 AVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
..+.......+.+......+..++. ...|+..+|..++.++...|+.++|.++.+++..-
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344444666766666666665543 56799999999999999999999999999998753
No 304
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=27.77 E-value=1e+02 Score=32.79 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=32.3
Q ss_pred CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004610 383 VPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427 (742)
Q Consensus 383 ~~pd~~-tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (742)
+.||.. -|+..|+...+.||+++|+.+++|-++.|+.--..||-.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 345544 467888888888888888888888888887544444433
No 305
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=27.60 E-value=8.7e+02 Score=26.86 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=74.2
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-----CCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----M-----GDGDMAFDMVKRMKSLGINPRLRS---YGPALSVF 432 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~----~-----g~~~~A~~l~~~M~~~g~~Pd~~t---y~~lI~~~ 432 (742)
.|+-++|.+++..+....-.++..||..+-+.|-. . ...+.|...+.+-- .+.||.++ +.+|+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF--e~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF--EIEPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH--cCCccccchHHHHHHHHHc
Confidence 89999999999996666667777888877665542 2 23556776666432 23354422 23333322
Q ss_pred HHcC-CHHHHHHHH----HHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 433 CNNG-DVDKACSVE----EHMLEHGV---YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 433 ~~~g-~~~~A~~l~----~~M~~~gv---~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.... .-.+..++- ....++|. ..|---+.+++.++.-.|+.++|.+...+|...
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2111 111222322 22234443 345566789999999999999999999999865
No 306
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=27.30 E-value=1.2e+03 Score=28.28 Aligned_cols=283 Identities=10% Similarity=-0.058 Sum_probs=140.8
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCc
Q 004610 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV 244 (742)
Q Consensus 165 ~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~ 244 (742)
...++++.+++-.+.+ +-.|++.-|-++= |+..++++.|++...+..+-+-.-+...|.-|.-.++
T Consensus 459 ~h~kslqale~av~~d-----~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS------- 524 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFD-----PTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS------- 524 (799)
T ss_pred HHHHHHHHHHHHHhcC-----CCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh-------
Confidence 3446777777764432 2446755555554 5667899999999999998766678888888777777
Q ss_pred ccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHc-----------
Q 004610 245 KPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL----------- 313 (742)
Q Consensus 245 ~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~----------- 313 (742)
-.+++.+|+++.+ .-+.+. |. |.+--..-|+- --.-++.++|......|...
T Consensus 525 ---a~kr~~~Al~vvd------~al~E~-~~-N~~l~~~~~~i------~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~ 587 (799)
T KOG4162|consen 525 ---AQKRLKEALDVVD------AALEEF-GD-NHVLMDGKIHI------ELTFNDREEALDTCIHKLALWEAEYGVQQTL 587 (799)
T ss_pred ---hhhhhHHHHHHHH------HHHHHh-hh-hhhhchhhhhh------hhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 6688888988885 111111 11 11100000111 11234555555444443221
Q ss_pred --C----------CCCCccc-----cc-hhHHhhccccccCCCchhhhhcCCCc--CHH------hhHHHHHHHHHhhcC
Q 004610 314 --G----------QFSNGHM-----KL-NSQLLDGRSNLERGPDDQSRKKDWSI--DNQ------DADEIRLSEDAKKYA 367 (742)
Q Consensus 314 --G----------~~Pd~~t-----y~-~~~li~~~~~~a~~~~~~m~~~g~~p--d~~------tyn~~lI~~~~k~g~ 367 (742)
| ..+...+ +. ...++..-...+. .-..|...-..| +.. .|.. .-+.+.+.+.
T Consensus 588 ~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~-se~~Lp~s~~~~~~~~~~~~~~~lwll-aa~~~~~~~~ 665 (799)
T KOG4162|consen 588 DEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG-SELKLPSSTVLPGPDSLWYLLQKLWLL-AADLFLLSGN 665 (799)
T ss_pred hhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc-cccccCcccccCCCCchHHHHHHHHHH-HHHHHHhcCC
Confidence 0 1111000 00 0111111000000 000011111111 111 1111 3455566666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHH--H
Q 004610 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACS--V 444 (742)
Q Consensus 368 ~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~--l 444 (742)
.++|.-.+.+....- ......|...=..+-..|..++|.+.|..-.. +.|+ +.+-+++=..+.+.|+-.-|.. +
T Consensus 666 ~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~ 742 (799)
T KOG4162|consen 666 DDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSL 742 (799)
T ss_pred chHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHH
Confidence 666665555544321 22333343333444456666677666655332 3344 3344455555666665555555 6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
+.++.+.+ ..+...|-.|=..+-+.|+.++|.+.|+.-.
T Consensus 743 L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 743 LSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 66666554 3355666666666677777777777766543
No 307
>PHA02875 ankyrin repeat protein; Provisional
Probab=26.97 E-value=2.6e+02 Score=30.92 Aligned_cols=167 Identities=11% Similarity=-0.005 Sum_probs=82.2
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCccccchhHHh-hccccccCCCchhhhhcCCCcCHHh--hHHHHHHHHHhhcCHHHH
Q 004610 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLL-DGRSNLERGPDDQSRKKDWSIDNQD--ADEIRLSEDAKKYAFQRG 371 (742)
Q Consensus 295 ~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li-~~~~~~a~~~~~~m~~~g~~pd~~t--yn~~lI~~~~k~g~~~~A 371 (742)
++.|..+.+.. +.+.|..|+.......+.+ -|....-..+...+...|..|+... ..+ .+...++.|+.+.+
T Consensus 10 ~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHHHH
Confidence 45566555444 4456888876553311222 2221122224455556666665431 122 44556677887665
Q ss_pred HHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH--HHHHHHHHHcCCHHHHHHHHH
Q 004610 372 FEIYEKMCLDEVPMNEAS---LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGDVDKACSVEE 446 (742)
Q Consensus 372 ~~lf~~M~~~g~~pd~~t---yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~~~g~~~~A~~l~~ 446 (742)
..+++ .|...+... -.+.+...+..|+.+ +++.+.+.|..|+.... .+.++..+..|+.+-+..++
T Consensus 85 ~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll- 155 (413)
T PHA02875 85 EELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI- 155 (413)
T ss_pred HHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-
Confidence 55554 332221111 123445556667764 45555566776665432 24556666788876554444
Q ss_pred HHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHH
Q 004610 447 HMLEHGVYPEEP---ELEALLRVSVEAGKGDRVYYL 479 (742)
Q Consensus 447 ~M~~~gv~pd~~---ty~~Li~~~~~~g~~~~A~~l 479 (742)
+.|..++.. -++. +...+..|..+-+..+
T Consensus 156 ---~~g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~L 187 (413)
T PHA02875 156 ---DHKACLDIEDCCGCTP-LIIAMAKGDIAICKML 187 (413)
T ss_pred ---hcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 445443322 2223 3334566766544443
No 308
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.78 E-value=4.3e+02 Score=22.69 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=36.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
...+|...+....... .+++ ++|+--...|+..|...|.++++.+.-+=-.+..+++++.|.
T Consensus 9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444554444333222 2232 788888888888888888888876554444444555555543
No 309
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.77 E-value=8.1e+02 Score=25.86 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=71.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
++.-+.+...+.+..+.+..|+. ...--..|+.+...|++..|+++..+..+. +. ...-|++ +..+ ...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c-~~~L--~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSC-VRHL--SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchH-HHHH--hHH
Confidence 66777777777777777777754 345566788888999999999999988754 11 1111211 1111 123
Q ss_pred HHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004610 438 VDKACSVEEHMLEH-----GVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (742)
Q Consensus 438 ~~~A~~l~~~M~~~-----gv~pd~~ty~~Li~~~~~~g~~~~A~~ll 480 (742)
+++-....+++.+. -..-|+..|..++.||.--|+...+.+-+
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44444444444332 12578899999999999999776655433
No 310
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.75 E-value=5.7e+02 Score=29.39 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=76.8
Q ss_pred HHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHH
Q 004610 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVD 439 (742)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~ 439 (742)
..+..|+++.|...|-+-..-. ++|.+.|+.=..+|++.|++++|++=-.+- ..+.|+. .-|+-.=.++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~--~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKT--RRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHH--HhcCCchhhHHHHhHHHHHhcccHH
Confidence 4567899999999998876654 459999999999999999999987755443 3456774 55666666677779999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004610 440 KACSVEEHMLEHGVYPEEPELEALLRVS 467 (742)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (742)
+|..-|.+=++.. .-|...++-|.+++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999998766543 23455556666665
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=25.71 E-value=1.8e+02 Score=19.08 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMK 414 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~ 414 (742)
+|..+-..+...|++++|++.|++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45555555556666666666665544
No 312
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.42 E-value=9.7e+02 Score=26.66 Aligned_cols=48 Identities=23% Similarity=0.137 Sum_probs=35.5
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004610 425 YGPALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (742)
Q Consensus 425 y~~lI~~~~~---~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (742)
+-.+|.++.+ .++.+.|...+..|.+.|..|....-..++.++-..|.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 3345555555 58999999999999999988887776666666655554
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.71 E-value=7.7e+02 Score=30.09 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=50.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM----SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~----~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (742)
-|+..++...++-|+.+-+. .+ .|..+.-.++..|+ +.|++++|.+-+-+-... +.| +.+|.-|.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 45555666666666655433 12 23333444444333 466666666555443221 223 23444444
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (742)
.+..+..-..+++.+.++|+.- ...-..||.+|.+-++.+...++
T Consensus 409 daq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred CHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHH
Confidence 4444444444555555555432 22224455555555444443333
No 314
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=24.64 E-value=5e+02 Score=23.11 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=18.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
..|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|..
T Consensus 51 NrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 51 NRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred ccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 344444444444333 2444444444332 233444444444444433
No 315
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=24.63 E-value=53 Score=28.52 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=25.0
Q ss_pred cchhHHHHHHHHhhcCCccccccccccc
Q 004610 588 RNSSFQKFQKWLDYYGPFEAVVDAANVG 615 (742)
Q Consensus 588 ~~~~~~~F~~~l~~~~pyD~viDG~NVg 615 (742)
.++..+.|++||...++|-..||++++-
T Consensus 55 p~~~vd~mk~wl~~~gsP~s~I~~~ef~ 82 (98)
T KOG3360|consen 55 PPEKVDEMKEWLLTRGSPVSAIDRAEFS 82 (98)
T ss_pred CHHHHHHHHHHHHhcCChhHheeeeeec
Confidence 4578999999999999999999999963
No 316
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=24.52 E-value=5.9e+02 Score=28.88 Aligned_cols=81 Identities=16% Similarity=0.093 Sum_probs=62.8
Q ss_pred HHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004610 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (742)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (742)
...|.. |=+...+.|+++-|.+.|.+... |..|+-.|...|+.+.-.++.+.-...|- +|....
T Consensus 347 ~~~W~~-Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~ 410 (443)
T PF04053_consen 347 PEKWKQ-LGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQ 410 (443)
T ss_dssp HHHHHH-HHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHH
Confidence 345656 77888899999999999988653 78889999999999888888877777764 677888
Q ss_pred HHHHcCCHHHHHHHHHH
Q 004610 431 VFCNNGDVDKACSVEEH 447 (742)
Q Consensus 431 ~~~~~g~~~~A~~l~~~ 447 (742)
++.-.|+++++.+++.+
T Consensus 411 ~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 411 AALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 88888999888877653
No 317
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=24.06 E-value=6.1e+02 Score=23.82 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=60.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH---HHHHcC
Q 004610 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLR---VSVEAG 471 (742)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~---~~~~~g 471 (742)
+++..|+++.|++.|.+-... +.-+...||.--.++--.|+.++|.+=+++..+. |-+ +.....+.++ .|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 457889999999999886654 4456788999999999999999999888877654 322 3222222221 244566
Q ss_pred CHHHHHHHHHHHHHc
Q 004610 472 KGDRVYYLLHKLRTS 486 (742)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (742)
+.+.|..=|..--+.
T Consensus 130 ~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHhHHHHHHh
Confidence 667666666554433
No 318
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.46 E-value=2.8e+02 Score=25.01 Aligned_cols=33 Identities=3% Similarity=-0.069 Sum_probs=25.7
Q ss_pred hhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCC
Q 004610 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (742)
Q Consensus 343 ~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (742)
.-.|..|+ +|+.+-++.-.++|+++.+-|.+.|
T Consensus 59 ~~sGy~Pt-------ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 59 DFSGYNPT-------VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred CccCCCCh-------HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 33455555 6677778899999999999998887
No 319
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=22.96 E-value=6.8e+02 Score=27.23 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=54.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhC---CCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHH-----CCCCCChhh-HH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLD---EVPMNEASLTA--VGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS-YG 426 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~---g~~pd~~tyn~--Li~~~~~~g~~~~A~~l~~~M~~-----~g~~Pd~~t-y~ 426 (742)
++...-+.++.++|+++++++.+. --.|+.+.|.. +.+.+...|+..++.+++.+.++ .|+.|++.+ |.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 444455566888899888888753 23477777644 44455568888888888888777 577776543 44
Q ss_pred HHHHH-HHHcCCHHHHH
Q 004610 427 PALSV-FCNNGDVDKAC 442 (742)
Q Consensus 427 ~lI~~-~~~~g~~~~A~ 442 (742)
.+=.- |-+.|++..++
T Consensus 161 ~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 44333 33456665543
No 320
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=22.60 E-value=6.1e+02 Score=23.33 Aligned_cols=128 Identities=19% Similarity=0.151 Sum_probs=82.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-HHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~-~~~~~ 435 (742)
....+...+.+..+...+...... ........+..+...+...+....+.+.+.........+. ......-. .+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 143 (291)
T COG0457 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHc
Confidence 556677777888887777776542 3344556677777777777888888888887765543331 11222222 67788
Q ss_pred CCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 436 GDVDKACSVEEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 436 g~~~~A~~l~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
|+.+.|...+++.....- ......+......+...++.+++...+.+....
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 888888888888754221 123344444444466778888888888887765
No 321
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=22.27 E-value=1.7e+02 Score=21.54 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=14.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 429 LSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
-.+|...|+.+.|.+++++....|
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHcC
Confidence 345666666666666666665433
No 322
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.09 E-value=3.6e+02 Score=31.85 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=62.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHCCCCCChhhHHHH
Q 004610 357 IRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDM------AFDMVKRMKSLGINPRLRSYGPA 428 (742)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~Li~~~~~~g~~~~------A~~l~~~M~~~g~~Pd~~ty~~l 428 (742)
.|..+|..+|++.++.++++..... |-+.=.-.||..|+...+.|.++- |.+++ +...+.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~l---q~a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELL---QQARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHH---HHhhcCCcchHHHHH
Confidence 4889999999999999999988753 444445678999999999998652 23333 233467788999988
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 004610 429 LSVFCNNGDVDKACSVEEHML 449 (742)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~ 449 (742)
+++-..--.-....-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 887665433333444444444
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=21.58 E-value=1.2e+02 Score=19.58 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=13.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 004610 465 RVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.++.+.|+.++|.++|+++.+.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 3445566677777777666654
No 324
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.56 E-value=2.9e+02 Score=24.95 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=16.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 428 ALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
+|+.+-+|...++|+++.+-|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 5555666666777777777776666
No 325
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=21.45 E-value=2e+02 Score=23.69 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=39.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCC
Q 004610 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP---ELEALLRVSVEAGK 472 (742)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~---ty~~Li~~~~~~g~ 472 (742)
..++.|+++-...++ +.+...+. -+..+...+..|+. ++++.+.+.|..++.. -++.|.- .+..|.
T Consensus 3 ~A~~~~~~~~~~~ll----~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~ 71 (89)
T PF12796_consen 3 IAAQNGNLEILKFLL----EKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGN 71 (89)
T ss_dssp HHHHTTTHHHHHHHH----HTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTH
T ss_pred HHHHcCCHHHHHHHH----HCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCC
Confidence 456777766444444 45554454 22366667778886 4455555677777654 3344444 466776
Q ss_pred HHHH
Q 004610 473 GDRV 476 (742)
Q Consensus 473 ~~~A 476 (742)
.+-+
T Consensus 72 ~~~~ 75 (89)
T PF12796_consen 72 LEIV 75 (89)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 326
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=21.39 E-value=95 Score=21.16 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHH
Q 004610 385 MNEASLTAVGRMAMSMGDGDMAF 407 (742)
Q Consensus 385 pd~~tyn~Li~~~~~~g~~~~A~ 407 (742)
-|...|+.|-..|...|+.++|.
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 36677777777888888877775
No 327
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.26 E-value=1.5e+03 Score=27.89 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=31.5
Q ss_pred HHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004610 371 GFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427 (742)
Q Consensus 371 A~~lf~~M-~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (742)
..+++.++ ...|+..+...+..+++.. .|++..++.+++++.. +...+.+|+..
T Consensus 184 l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia-~~~~~~IT~e~ 238 (824)
T PRK07764 184 MRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLA-GAGPEGVTYER 238 (824)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh-hcCCCCCCHHH
Confidence 33344333 4467777777766665543 5788888888887663 22234455543
No 328
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=20.82 E-value=1.1e+03 Score=25.47 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=43.8
Q ss_pred HHHHHHhhcCHHHHHHHH-HHHHhCCCCCCH----HHHHHHHHHHHHcCCHH-HHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIY-EKMCLDEVPMNE----ASLTAVGRMAMSMGDGD-MAFDMVKRMKSLGINPRLRSYGPALSV 431 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf-~~M~~~g~~pd~----~tyn~Li~~~~~~g~~~-~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (742)
|.+-..+...+++..... ++|++.++ |+. +.|+++|++--=+.+-+ -|.+.++ .+.+|.+|+.+
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~a 330 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAA 330 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHH
Confidence 444444555566665544 46777665 443 45777776543221111 1333333 34578999999
Q ss_pred HHHcCCHHHHHH
Q 004610 432 FCNNGDVDKACS 443 (742)
Q Consensus 432 ~~~~g~~~~A~~ 443 (742)
+|..|+.+.+.-
T Consensus 331 f~s~g~sEL~Ll 342 (412)
T KOG2297|consen 331 FCSQGQSELELL 342 (412)
T ss_pred HhcCChHHHHHH
Confidence 999999876543
No 329
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.61 E-value=5.1e+02 Score=25.69 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCCCCH--HHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004610 368 FQRGFEIYEKMCLDEVPMNE--ASL-----TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (742)
Q Consensus 368 ~~~A~~lf~~M~~~g~~pd~--~ty-----n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (742)
++.|+.+|+.+.+.--.|.. ... -..+-.|.+.|.+++|.++++..... |+....-.-+....+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 45667777766654322211 111 12233556666666666666665542 44444444444444433
No 330
>PRK09857 putative transposase; Provisional
Probab=20.57 E-value=5.7e+02 Score=27.18 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
..++....+.|+.++-.++++.+.+. +.......-++-.-+.+.|..+++.++..+|... |++.+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~--g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLES--GVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHH
Confidence 34454445555555555555555443 2223333334445555555556666777777666 66665
No 331
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.49 E-value=1e+03 Score=25.96 Aligned_cols=116 Identities=13% Similarity=0.041 Sum_probs=65.5
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHH--HH--HHHHcCCHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA--LS--VFCNNGDVDK 440 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~l--I~--~~~~~g~~~~ 440 (742)
.|..-+|-..++++.+. .+-|...++-.=++|.-.|+.+.-...++.+.-. -.||.-.|+-+ |- ++..+|-.++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555666666666553 4556677777777777777777777777665533 23444333322 22 3334677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
|.+.-++-.+-+ +-|.-.-.++-..+--.|+..++.+.+.+-
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 776665544332 223333445555555666677776665443
Done!