Query 004610
Match_columns 742
No_of_seqs 514 out of 3413
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 17:45:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004610.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1910-1914//hhsearch_pdb/004610hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 1.0 1 1 712.5 39.9 443 168-741 8-450 (501)
2 4g26_A Pentatricopeptide repea 1.0 1 1 240.9 22.2 191 147-436 25-224 (501)
3 3spa_A Mtrpol, DNA-directed RN 1.0 1 1 182.4 5.3 119 188-332 124-247 (1134)
4 3spa_A Mtrpol, DNA-directed RN 1.0 1 1 182.2 10.7 120 145-287 124-245 (1134)
5 2xpi_A Anaphase-promoting comp 1.0 1 1 172.1 22.7 320 147-511 83-461 (597)
6 2xpi_A Anaphase-promoting comp 1.0 1 1 171.3 27.0 310 159-511 126-495 (597)
7 3v33_A Ribonuclease ZC3H12A; r 1.0 1 1 156.8 3.9 126 602-742 22-159 (223)
8 3v32_B Ribonuclease ZC3H12A; r 1.0 1 1 148.4 4.0 126 602-742 22-159 (185)
9 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 110.0 27.2 132 351-486 169-300 (388)
10 1b89_A Protein (clathrin heavy 1.0 1 1 105.9 9.4 224 160-486 13-236 (449)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=712.52 Aligned_cols=443 Identities=54% Similarity=0.952 Sum_probs=409.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 39999999975289888899885999999999999159978999999999992999899999999999870545876668
Q 004610 168 GQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPA 247 (742)
Q Consensus 168 ~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~ 247 (742)
.+..+...+.++ .....|+ ..++.+|++||+.|++++|+++|++|++.|++||.+|||+||++|++.
T Consensus 8 ~~e~L~~~~~~k----~~~~spe-~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~-------- 74 (501)
T 4g26_A 8 PSENLSRKAKKK----AIQQSPE-ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA-------- 74 (501)
T ss_dssp --------------------CHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC--------
T ss_conf 599999999982----6668979-999999999985989999999999999818998783999999999857--------
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 88977779988542014501000258998643210022554322100126895779999999998499888222110677
Q 004610 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (742)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~~~~gv~~~vtyn~li~~~~~~~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~~~l 327 (742)
+...
T Consensus 75 --~~~~-------------------------------------------------------------------------- 78 (501)
T 4g26_A 75 --EAAT-------------------------------------------------------------------------- 78 (501)
T ss_dssp --CCCS--------------------------------------------------------------------------
T ss_pred --CCHH--------------------------------------------------------------------------
T ss_conf --8304--------------------------------------------------------------------------
Q ss_pred HHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 60112224799334421599868775489999899820599999999999885999999999999999999859977999
Q 004610 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (742)
Q Consensus 328 i~~~~~~a~~~~~~m~~~g~~pd~~tyn~~LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~ 407 (742)
..++.+.+++|.++|++|...|+.||..|||+||++|++.|++++|.
T Consensus 79 ---------------------------------~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~ 125 (501)
T 4g26_A 79 ---------------------------------ESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAF 125 (501)
T ss_dssp ---------------------------------SSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------------------------HHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf ---------------------------------33321249999999999998089998999999999998469778899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998899878511999999999759988999999999978998999999999999998399999999999998735
Q 004610 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (742)
Q Consensus 408 ~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~~ 487 (742)
++|++|.+.|+.||..||+++|.+||+.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|++.+
T Consensus 126 ~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 126 DMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999997289886111048999999888999999999999862999999999999999853898999999999999948
Q ss_pred CCCCHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99995499999999605488771112220578999854149974456557888408997430699866632221100137
Q 004610 488 RKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDL 567 (742)
Q Consensus 488 ~~~~p~t~~~I~~~~~~~~~~~a~~~~w~~~~i~ea~~~~g~~~~~m~~~g~~p~~v~~~~v~~~G~C~~c~~~L~~i~l 567 (742)
+.|++.||++|..||.+..+..++...|+...+.+++...|++||+.+|.+...|.+..+.+...|.|.+|+..|..+++
T Consensus 206 ~~ps~~T~~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l 285 (501)
T 4g26_A 206 RQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDI 285 (501)
T ss_dssp SSBCHHHHHHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCC
T ss_conf 99699999999999830700444332222455445675067543444444667504776321158870643233051027
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 98899999999999998432106699999999541995411113301024788768023899999999628999821898
Q 004610 568 DPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIV 647 (742)
Q Consensus 568 ~~~e~~~l~~~i~~~a~~~~~~~~l~~F~~~l~~~~p~D~vIDG~NVg~y~~~~~~~~~i~~vv~~l~~~~~~~~~~lvv 647 (742)
+++|++.|.+.|.+.++.++++++|+.|++|+++++|||+||||+|||||+|++|++.|++.|+..+++..+.+++||||
T Consensus 286 ~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d~vIDG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~ 365 (501)
T 4g26_A 286 NPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVI 365 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTSCCCSEEEEHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 98999999999999987363489999999999846992102101002011566566789999999999984345771898
Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCH
Q ss_conf 12343358989994459999999865905608999999854775521154545421299269717533221123558850
Q 004610 648 LHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDF 727 (742)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~~~~l~a~~~~~~~~vs~d~~rdh~~~l~~~~~ 727 (742)
||+||+.+..+..|.+.+++++|++++.+|.||++||||| |||||||+.+|+|||||+||||+|+|+++++
T Consensus 366 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~---------~~lyAal~~~~~~vsnD~mRdH~f~l~~~~~ 436 (501)
T 4g26_A 366 LHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDW---------YWLYAAVSCKCLLVTNDEMRDHLFQLLGNSF 436 (501)
T ss_dssp EEHHHHTSGGGSSHHHHHHHHHHHHTTCEEEECTTCCHHH---------HHHHHHHHHTCEEECCCCCCSGGGGGGTTTH
T ss_pred EEHHHHCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCHH---------HHHHHHHCCCCEEEECCCCCCCHHCCCCCHH
T ss_conf 4064416665588788999999996696996899887668---------9999987069779836441210210178389
Q ss_pred HHHHHHCCEEEEEE
Q ss_conf 54342014023530
Q 004610 728 FPRWKERHQVSESL 741 (742)
Q Consensus 728 f~rW~~~h~~~~~~ 741 (742)
|+|||++|||+|++
T Consensus 437 F~rW~~~hq~~~~~ 450 (501)
T 4g26_A 437 FPRWKEKHQVRISV 450 (501)
T ss_dssp HHHHHHHHEEEEEE
T ss_pred HHHHHHCCEEEEEE
T ss_conf 99998537679984
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=240.85 Aligned_cols=191 Identities=12% Similarity=0.133 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHH
Q ss_conf 146665664379987415932399999999752898888998859999999999991599---------78999999999
Q 004610 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD---------VMGAIRLYDKA 217 (742)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~---------~~~A~~lf~~M 217 (742)
.-..++..++ ..++.++..+|+++|++|.+.| +.||..+||++|.+|++.+. ++.|.++|++|
T Consensus 25 pe~~l~~~id--~c~k~G~~~~A~~lf~~M~~~G------v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 25 PEALLKQKLD--MCSKKGDVLEALRLYDEARRNG------VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp HHHHHHHHHH--HTTTSCCHHHHHHHHHHHHHHT------CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHH
T ss_conf 7999999999--9985989999999999999818------9987839999999998578304333212499999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99299989999999999987054587666888977779988542014501000258998643210022554322100126
Q 004610 218 QREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS 297 (742)
Q Consensus 218 ~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~gv~~~vtyn~li~~~~~~~~~~~~ 297 (742)
...|+.||..|||+||.+|+ + .
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~----------~------------------------------------------------~ 118 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAV----------A------------------------------------------------K 118 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHH----------H------------------------------------------------H
T ss_pred HHHCCCCCHHHHHHHHHHHH----------H------------------------------------------------C
T ss_conf 98089998999999999998----------4------------------------------------------------6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 89577999999999849988822211067760112224799334421599868775489999899820599999999999
Q 004610 298 YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEK 377 (742)
Q Consensus 298 g~~~~A~~l~~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~LI~~~~k~g~~~~A~~lf~~ 377 (742)
|++++|.++|++|...|+.||..||+ + +|.+|++.|++++|.++|++
T Consensus 119 g~~~~A~~l~~~M~~~g~~Pd~~tyn--------------------------------~-lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 119 DDPEMAFDMVKQMKAFGIQPRLRSYG--------------------------------P-ALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHH--------------------------------H-HHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEH--------------------------------H-HHHHHHHCCCHHHHHHHHHH
T ss_conf 97788999999999728988611104--------------------------------8-99999988899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88599999999999999999985997799999999998899878511999999999759
Q 004610 378 MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (742)
Q Consensus 378 M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g 436 (742)
|...|+.||..||++||++|++.|++++|.++|++|++.|+.|+..||+.++..|+..+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 98629999999999999998538989999999999999489969999999999983070
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=182.43 Aligned_cols=119 Identities=11% Similarity=0.044 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 8859999999999991599789999999999---9299989999999999987054587666888977779988542014
Q 004610 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQ---REGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTM 264 (742)
Q Consensus 188 ~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~---~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~ 264 (742)
.--..+||++|++||+.|++++|.++|++|. ..|+.||++|||+||++|| +.|++++|.++|.
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glc----------k~G~~~eA~~Lf~---- 189 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA----------RQGAFKELVYVLF---- 189 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHH----------HHTCHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHH----
T ss_conf 76999999999999868899999999999998764599977767999999998----------6899999999999----
Q ss_pred CCHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCC
Q ss_conf 501000258998-643210022554322100126895-77999999999849988822211067760112
Q 004610 265 NSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS 332 (742)
Q Consensus 265 ~s~em~~~~gv~-~~vtyn~li~~~~~~~~~~~~g~~-~~A~~l~~~M~~~G~~Pd~~ty~~~~li~~~~ 332 (742)
+|... |+. |++|||++|++ +|+.|+. ++|.++|++|...|+.||.++|+ .++.+..
T Consensus 190 ---eM~~~-G~~PDvvTYntLI~g------lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~--~ll~~~e 247 (1134)
T 3spa_A 190 ---MVKDA-GLTPDLLSYAAALQC------MGRQDQDAGTIERCLEQMSQEGLKLQALFTA--VLLSEED 247 (1134)
T ss_dssp ---HHHHT-TCCCCHHHHHHHHHH------HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH--SCCCHHH
T ss_pred ---HHHHC-CCCCCHHHHHHHHHH------HHHCCCCHHHHHHHHHHHHHCCCCCCHHHCC--CCCCHHH
T ss_conf ---99981-999859999999999------9868996999999999999809998731101--4637156
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=182.24 Aligned_cols=120 Identities=5% Similarity=-0.056 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 53146665664379987415932399999999752898888998859999999999991599789999999999929998
Q 004610 145 IKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (742)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p 224 (742)
.....+||..++ .+++.++.++|.++|++|.+. ...|+.||++|||+||++||+.|++++|.++|++|++.|+.|
T Consensus 124 ~~~~~TynaLId--glcK~G~leeA~~Lf~eM~~m---~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P 198 (1134)
T 3spa_A 124 SGQQQRLLAFFK--CCLLTDQLPLAHHLLVVHHGQ---RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198 (1134)
T ss_dssp CHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHS---HHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 769999999999--998688999999999999987---645999777679999999986899999999999999819998
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCHHHCCCCCCC-CCCCCCCCCCC
Q ss_conf 9999999999987054587666888977-779988542014501000258998-64321002255
Q 004610 225 GQYHYNVLLYLCSSAAVGVVKPAKSGSG-MRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSP 287 (742)
Q Consensus 225 d~~tyn~LL~~~~~~~~~~~~~~k~g~~-~~A~~~~~~~~~~s~em~~~~gv~-~~vtyn~li~~ 287 (742)
|.+|||+||.++| +.|.. ++|.++| ++|... |+. |.++|++++.+
T Consensus 199 DvvTYntLI~glc----------K~G~~~e~A~~Ll-------~EM~~k-G~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 199 DLLSYAAALQCMG----------RQDQDAGTIERCL-------EQMSQE-GLKLQALFTAVLLSE 245 (1134)
T ss_dssp CHHHHHHHHHHHH----------HHTCCHHHHHHHH-------HHHHHH-TCCSHHHHHHSCCCH
T ss_pred CHHHHHHHHHHHH----------HCCCCHHHHHHHH-------HHHHHC-CCCCCHHHCCCCCCH
T ss_conf 5999999999998----------6899699999999-------999980-999873110146371
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=172.09 Aligned_cols=320 Identities=8% Similarity=-0.089 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 14666566437998741593239999999975289888899885999999999999159978999999999992999899
Q 004610 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (742)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (742)
....++..+. ...+.++..+|..+|+.|.+ ..|+..++..+..+|.+.|++++|+.+|+.+.. ..++.
T Consensus 83 ~~~~~~~~~~--~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 150 (597)
T 2xpi_A 83 REDYLRLWRH--DALMQQQYKCAAFVGEKVLD--------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSS 150 (597)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCH
T ss_pred HHHHHHHHHH--HHHHCCCCHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCH
T ss_conf 9999999999--99874583479999999996--------089935799999999974769999999998733--54565
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCC--------------CCC-CCCCCCCCCCCCCCC
Q ss_conf 99999999987054587666888977779988542014501000258--------------998-643210022554322
Q 004610 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR--------------DMD-NNGQLDYGSSPMIDK 291 (742)
Q Consensus 227 ~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~--------------gv~-~~vtyn~li~~~~~~ 291 (742)
.+++.++.+|. +.|++++|..+|+ ++.... +.. +..+|+.++.+
T Consensus 151 ~~~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 209 (597)
T 2xpi_A 151 ACRYLAAFCLV----------KLYDWQGALNLLG-------ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV---- 209 (597)
T ss_dssp HHHHHHHHHHH----------HTTCHHHHHHHHC-------SSCTTC----------CCCSSCCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----
T ss_conf 08999999999----------8866999999984-------24886322323433432112351258999998899----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-CH------------------------------------HHHHHCCC--
Q ss_conf 1001268957799999999984998882221-10------------------------------------67760112--
Q 004610 292 LESNSSYRFDDLDSTFNEKENLGQFSNGHMK-LN------------------------------------SQLLDGRS-- 332 (742)
Q Consensus 292 ~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty-~~------------------------------------~~li~~~~-- 332 (742)
+.+.|++++|..+|++|.+.+ |+.... .. ..++..++
T Consensus 210 --~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 210 --YTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred --HHHCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf --998399899999999999729--3256999999985034615678999865774234430889999999999998073
Q ss_pred ---CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf ---22479933442159986877548999989982059999999999988599999999999999999985997799999
Q 004610 333 ---NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (742)
Q Consensus 333 ---~~a~~~~~~m~~~g~~pd~~tyn~~LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l 409 (742)
.+|..++..+... .++..+|+. ++..|.+.|++++|.++|++|...+ +.+..+++.++.++.+.|+.++|..+
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLC-KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CCHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 1399999999876438--830999999-9999998468999999999999729-55379999999999982777799999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999889987851199999999975998899999999997899899999999999999839999999999999873599
Q 004610 410 VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (742)
Q Consensus 410 ~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~~~~ 489 (742)
+++|... ...+..+|+.+...|++.|+.++|..+|++|.... ..+..+|+.++.++.+.|+.++|.++|++|... .
T Consensus 362 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 437 (597)
T 2xpi_A 362 SNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--F 437 (597)
T ss_dssp HHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
T ss_conf 9999851-83547999999999998356999999999998729-777899999999999757779999999999986--8
Q ss_pred C-CHHHHHH-HHHHHHCHHHHHHC
Q ss_conf 9-9549999-99996054887711
Q 004610 490 V-SPSTADV-IAKWFNSKEAARLG 511 (742)
Q Consensus 490 ~-~p~t~~~-I~~~~~~~~~~~a~ 511 (742)
+ .+.++.. ...++..+...++.
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 134389999999999857999999
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=171.33 Aligned_cols=310 Identities=11% Similarity=-0.056 Sum_probs=194.8
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HC--------------CCC
Q ss_conf 987415932399999999752898888998859999999999991599789999999999-92--------------999
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQ-RE--------------GIK 223 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~-~~--------------Gi~ 223 (742)
...+.++..+|..+|+.+.. ..++..+++.++.+|.+.|++++|+++|+++. .. |..
T Consensus 126 ~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (597)
T 2xpi_A 126 VYCCTGDYARAKCLLTKEDL--------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197 (597)
T ss_dssp HHHHTTCHHHHHHHHHHTCG--------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCC
T ss_pred HHHHCCCHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99974769999999998733--------5456508999999999886699999998424886322323433432112351
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCC---------------------------
Q ss_conf 89999999999987054587666888977779988542014501000258998---------------------------
Q 004610 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--------------------------- 276 (742)
Q Consensus 224 pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~gv~--------------------------- 276 (742)
++..+|+.+..+|. +.|+.++|...|. +|... +..
T Consensus 198 ~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 259 (597)
T 2xpi_A 198 LEASMCYLRGQVYT----------NLSNFDRAKECYK-------EALMV-DAKCYEAFDQLVSNHLLTADEEWDLVLKLN 259 (597)
T ss_dssp HHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHTTCSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHH-CCHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 25899999889999----------8399899999999-------99972-932569999999850346156789998657
Q ss_pred -----------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCC-----CCCCCCCH
Q ss_conf -----------64321002255432210012689577999999999849988822211067760112-----22479933
Q 004610 277 -----------NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDD 340 (742)
Q Consensus 277 -----------~~vtyn~li~~~~~~~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~ 340 (742)
....|+.++.. +++.|++++|..+|++|... .++..+++ .+..++. .+|...+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~A~~~~~~~~~~--~~~~~~~~--~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 260 YSTYSKEDAAFLRSLYMLKLNK------TSHEDELRRAEDYLSSINGL--EKSSDLLL--CKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp THHHHGGGHHHHHHHHHTTSCT------TTTHHHHHHHHHHHHTSTTG--GGCHHHHH--HHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHCC--CCHHHHHH--HHHHHHHHHCCHHHHHHHHH
T ss_conf 7423443088999999999999------80731399999999876438--83099999--99999998468999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 44215998687754899998998205999999999998859999999999999999998599779999999999889987
Q 004610 341 QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (742)
Q Consensus 341 ~m~~~g~~pd~~tyn~~LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (742)
.+...+. .+..+|+. ++..+.+.|+.++|.++|++|.... +.+..+|+.++..+.+.|++++|.++|+++.+.. ..
T Consensus 330 ~~~~~~~-~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 405 (597)
T 2xpi_A 330 KILEIDP-YNLDVYPL-HLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ 405 (597)
T ss_dssp HHHHHCT-TCCTTHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHCCC-CCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CC
T ss_conf 9997295-53799999-9999998277779999999998518-3547999999999998356999999999998729-77
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHH-H
Q ss_conf 8511999999999759988999999999978998999999999999998399999999999998735999-9549999-9
Q 004610 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-I 498 (742)
Q Consensus 421 d~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I 498 (742)
+..+|+.++.++++.|+.++|.++|++|...+ ..+..+|..+..+|.+.|++++|.++|++|.+. .+ .+.++.. +
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 482 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELG 482 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_conf 78999999999997577799999999999868-134389999999999857999999999999984--888767999999
Q ss_pred HHHHHCHHHHHHC
Q ss_conf 9996054887711
Q 004610 499 AKWFNSKEAARLG 511 (742)
Q Consensus 499 ~~~~~~~~~~~a~ 511 (742)
..+++.+...++.
T Consensus 483 ~~~~~~g~~~~A~ 495 (597)
T 2xpi_A 483 VVAFNKSDMQTAI 495 (597)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHHCCHHHHH
T ss_conf 9999818999999
No 7
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=156.84 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=105.6
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHCCCCCC-CEEEECCCCCC-CCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 1995411113301024788--76802389999999962899982-18981234335-89899944599999998659056
Q 004610 602 YGPFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRIT-GHKMDQPVNRALIEKWKNADALY 677 (742)
Q Consensus 602 ~~p~D~vIDG~NVg~y~~~--~~~~~~i~~vv~~l~~~~~~~~~-~lvvl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 677 (742)
...--+||||+||||+..+ .|++.+|..+|++|.+ .|.. ++|+++..+.. .+......+..++++|.+.+.++
T Consensus 22 ~~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~---RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~ 98 (223)
T 3v33_A 22 SDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILV 98 (223)
T ss_dssp -CBCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHT---TTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEE
T ss_pred CCCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHH---CCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf 6687489918898745089877479999999999998---3997569994556520566667778699999999879999
Q ss_pred ECCCC--------CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCEEEEEEC
Q ss_conf 08999--------999854775521154545421299269717533221123558850543420140235309
Q 004610 678 ATPTG--------SNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVSESLL 742 (742)
Q Consensus 678 ~~~~~--------~~dd~~~~~~~~~~~~l~a~~~~~~~~vs~d~~rdh~~~l~~~~~f~rW~~~h~~~~~~~ 742 (742)
.||.+ ++||+ |||++|...++.|||||+||||.. ....|.+|.+.|++.|+|+
T Consensus 99 ~TPs~~v~G~r~~sydD~---------~iL~~A~~~~g~IVSND~yRD~~~---e~p~~k~~Ie~rlI~ytFv 159 (223)
T 3v33_A 99 FTPSRRVGGKRVVCYDDR---------FIVKLAYESDGIVVSNDTYRDLQG---ERQEWKRFIEERLLMYSFV 159 (223)
T ss_dssp EECEEEETTEEEECCHHH---------HHHHHHHHTTCEEECSCCCHHHHT---TCHHHHHHHHHHEECCEEE
T ss_pred ECCCCCCCCCCCCCCCHH---------HHHHHHHHCCCEEEECCCHHHHHH---HCHHHHHHHHHCEEEEEEE
T ss_conf 878977677654666549---------999999975999995843898875---4799999998586567988
No 8
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=1.00 E-value=1 Score=148.42 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=104.7
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHCCCCCC-CEEEECCCCCC-CCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 1995411113301024788--76802389999999962899982-18981234335-89899944599999998659056
Q 004610 602 YGPFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRIT-GHKMDQPVNRALIEKWKNADALY 677 (742)
Q Consensus 602 ~~p~D~vIDG~NVg~y~~~--~~~~~~i~~vv~~l~~~~~~~~~-~lvvl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 677 (742)
...--+||||+||||+.++ .|++.+|..+|++|.+ .|.. +.|+++..+.. .++.....+..++++|.+.+.++
T Consensus 22 ~~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~---rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~ 98 (185)
T 3v32_B 22 SDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILV 98 (185)
T ss_dssp -CBCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEE
T ss_pred CCCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHH---CCCCCEEEEECHHHHHCCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf 7787599928998756089877478999999999998---4997549995667630566667878799999999879989
Q ss_pred ECCCC--------CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCEEEEEEC
Q ss_conf 08999--------999854775521154545421299269717533221123558850543420140235309
Q 004610 678 ATPTG--------SNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVSESLL 742 (742)
Q Consensus 678 ~~~~~--------~~dd~~~~~~~~~~~~l~a~~~~~~~~vs~d~~rdh~~~l~~~~~f~rW~~~h~~~~~~~ 742 (742)
.||.+ ++||+ |||++|...++.+||||+||||.. ....|.+|.+.|++.|+|+
T Consensus 99 ~TPs~~~~g~~~~~ydD~---------~il~~A~~~~g~IVSND~~rD~~~---~~p~~k~~Ie~rli~ytFv 159 (185)
T 3v32_B 99 FTPSRRVGGKRVVCYDDR---------FIVKLAYESDGIVVSNDTYRDLQG---ERQEWKRFIEERLLMYSFV 159 (185)
T ss_dssp EECCCC-------CCHHH---------HHHHHHHHTTCEEECSCCCHHHHH---HCHHHHHHHHHHEECCEEE
T ss_pred ECCCCCCCCCCCCCCCHH---------HHHHHHHHCCCEEEECCCHHHHHH---HCHHHHHHHHHCCCEEEEE
T ss_conf 878966688754676579---------999999986999996843798875---2899999998570103988
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=110.03 Aligned_cols=132 Identities=14% Similarity=-0.025 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 77548999989982059999999999988599999999999999999985997799999999998899878511999999
Q 004610 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (742)
Q Consensus 351 ~~tyn~~LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (742)
..+|+. +...+.+.|++++|.+.|+++.... +-+...|..+-..+...|++++|...+++..... .-+..+|..+..
T Consensus 169 ~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 245 (388)
T 1w3b_A 169 AVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLAC 245 (388)
T ss_dssp HHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 899999-9999998599999999999998559-8867999999999998578999999999998529-687899999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99975998899999999997899899999999999999839999999999999873
Q 004610 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 431 a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~ 486 (742)
.+...|+.++|...++++.... ..+...|..+...+.+.|+.++|...++++...
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9998688999999999998649-998899999999999869979999999999864
No 10
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=1.00 E-value=1 Score=105.86 Aligned_cols=224 Identities=13% Similarity=0.104 Sum_probs=176.9
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 87415932399999999752898888998859999999999991599789999999999929998999999999998705
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
+.+.++.++|.+.++.+ +.. ..|..+..++.+.|++++|++.|.+. +|..+|..++..+.
T Consensus 13 l~~~~~ld~A~~fae~~------~~~------~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae-- 72 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC------NEP------AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN-- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHHC------CCH------HHHHHHHHHHHHCCCHHHHHHHHHCC------CCHHHHHHHHHHHH--
T ss_conf 99744799999999859------986------79999999998769989999999808------98799999999998--
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 45876668889777799885420145010002589986432100225543221001268957799999999984998882
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (742)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~gv~~~vtyn~li~~~~~~~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 319 (742)
..|++++|...+. |... ..++..+.+.++.+ |.+.|+++++.++++ .|+.
T Consensus 73 --------~~g~~EeAi~yl~--------~ark-~~~~~~i~~~Li~~------Y~Klg~l~e~e~f~~-------~pn~ 122 (449)
T 1b89_A 73 --------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPNN 122 (449)
T ss_dssp -----------------------------------------------------------CHHHHTTTTT-------CC--
T ss_pred --------HCCCHHHHHHHHH--------HHHH-HCCCCHHHHHHHHH------HHHHCCHHHHHHHHC-------CCCH
T ss_conf --------6798999999999--------9987-48410257999999------998199999999884-------9968
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 22110677601122247993344215998687754899998998205999999999998859999999999999999998
Q 004610 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (742)
Q Consensus 320 ~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~ 399 (742)
. +|+. +-..|...|.+++|...|..+ ..|..++.++++
T Consensus 123 ~--------------------------------a~~~-IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~ 160 (449)
T 1b89_A 123 A--------------------------------HIQQ-VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 160 (449)
T ss_dssp -----------------------------------------------CTTTHHHHHHHT---------TCHHHHHHHHHT
T ss_pred H--------------------------------HHHH-HHHHHHHCCCHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_conf 9--------------------------------9999-999998718899999999976---------569999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 59977999999999988998785119999999997599889999999999789989999999999999983999999999
Q 004610 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (742)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~~l 479 (742)
.|++++|.+.+..+ .+..+|..++.+|+..|+++.|...... +..+......++..|.+.|++++|..+
T Consensus 161 Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 161 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCHHHHHHHHHHC------CCCHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 64599999999981------8956599999999980848999998999-----984876699999999988899999999
Q ss_pred HHHHHHC
Q ss_conf 9999873
Q 004610 480 LHKLRTS 486 (742)
Q Consensus 480 l~~M~~~ 486 (742)
++.-...
T Consensus 230 Le~aL~l 236 (449)
T 1b89_A 230 LEAALGL 236 (449)
T ss_dssp HHHHTTS
T ss_pred HHHHHCC
T ss_conf 9998677
Done!