BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004611
(742 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 1187 bits (3072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/744 (77%), Positives = 653/744 (87%), Gaps = 3/744 (0%)
Query: 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDI 60
MKL+PRE EKLGLHNAGYLAQKRLARG+RLNYTEAVALIA+Q +E+ RDG+KTVA+LM +
Sbjct: 1 MKLSPREVEKLGLHNAGYLAQKRLARGVRLNYTEAVALIASQIMEYARDGEKTVAQLMXL 60
Query: 61 GKQILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPVPA 120
G+ +LGRRQVLPAVPHLL+ VQVE TFPDGTKL+T+HDPI+ ENG L+ AL GS LPVP+
Sbjct: 61 GQHLLGRRQVLPAVPHLLNAVQVEATFPDGTKLVTVHDPISRENGELQEALFGSLLPVPS 120
Query: 121 MDKFPGI-EDNNVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYL 179
+DKF EDN +PG I+ +TLN GRKAVILKV + GDRP+QVGSHYHFIEVNPYL
Sbjct: 121 LDKFAETKEDNRIPGEILCEDECLTLNIGRKAVILKVTSKGDRPIQVGSHYHFIEVNPYL 180
Query: 180 VFDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAA 239
FDRRKA+GMRLNIAAGTA RFEPG+ K V L+SI G KVIRGGN I DGP ++ AA
Sbjct: 181 TFDRRKAYGMRLNIAAGTAVRFEPGDXKSVTLVSIEGNKVIRGGNAIADGPVNETNLEAA 240
Query: 240 MEAVKLRQFGNQEEANTSVGVAGEDRY--LTTVISREAYANMYGPTTGDKIQLGDTELYA 297
M AV+ + FG++EE + S G ED T I R+ YAN YGPTTGDKI+LGDT L A
Sbjct: 241 MHAVRSKGFGHEEEKDASEGFTKEDPNCPFNTFIHRKEYANKYGPTTGDKIRLGDTNLLA 300
Query: 298 EIESDFSVYGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHTGIFKADIGIK 357
EIE D+++YGDECVFGGGKVIR+GMGQ+CGH A SLDTVITNAVIID+TGI KADIGIK
Sbjct: 301 EIEKDYALYGDECVFGGGKVIRDGMGQSCGHPPAISLDTVITNAVIIDYTGIIKADIGIK 360
Query: 358 NGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAI 417
+GLI ++GKAGNPDIMN V NMIIGANTEVIAGE IVTAGAIDCHVH+ICPQL ++AI
Sbjct: 361 DGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICPQLVYEAI 420
Query: 418 ASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHE 477
+SGITTLVGGGTGPA GTRATTCTP+P+QM+LMLQSTDDLPLNFGFTGKG+S+KPDELHE
Sbjct: 421 SSGITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQSTDDLPLNFGFTGKGSSSKPDELHE 480
Query: 478 IIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRT 537
IIKAGAMGL LHEDWGSTPAAIDNCLT+AE +DIQ+NIHTDTLNE+GFVEH+IAAFKGRT
Sbjct: 481 IIKAGAMGLXLHEDWGSTPAAIDNCLTIAEHHDIQINIHTDTLNEAGFVEHSIAAFKGRT 540
Query: 538 IHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIP 597
IHTYHSEGAGGGHAPDIIKVCG+KNVLPSSTNPTRP TSNTIDEHLDMLMV HHL ++IP
Sbjct: 541 IHTYHSEGAGGGHAPDIIKVCGIKNVLPSSTNPTRPLTSNTIDEHLDMLMVXHHLDREIP 600
Query: 598 EDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGS 657
ED+AFA SRIR +TIAAED+L+D+GAISIISSDSQAMGR+GEVISRTWQTA KMK+Q G
Sbjct: 601 EDLAFAHSRIRKKTIAAEDVLNDIGAISIISSDSQAMGRVGEVISRTWQTADKMKAQTGP 660
Query: 658 FGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMV 717
++DNDN RIRRYIAKYTINPAIANGFSQ+VGSVEVGKLADLV+WKPSFFG KPEMV
Sbjct: 661 LKCDSSDNDNFRIRRYIAKYTINPAIANGFSQYVGSVEVGKLADLVMWKPSFFGTKPEMV 720
Query: 718 IKGGAIAWANMGDPNASIPTPEPV 741
IKGG +AWA++GDPNASIPTPEPV
Sbjct: 721 IKGGMVAWADIGDPNASIPTPEPV 744
>pdb|4GY7|A Chain A, Crystallographic Structure Analysis Of Urease From Jack
Bean (Canavalia Ensiformis) At 1.49 A Resolution
Length = 840
Score = 1182 bits (3059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/744 (77%), Positives = 651/744 (87%), Gaps = 3/744 (0%)
Query: 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDI 60
MKL+PRE EKLGLHNAGYLAQKRLARG+RLNYTEAVALIA+Q +E+ RDG+KTVA+LM +
Sbjct: 1 MKLSPREVEKLGLHNAGYLAQKRLARGVRLNYTEAVALIASQIMEYARDGEKTVAQLMXL 60
Query: 61 GKQILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPVPA 120
G+ +LGRRQVLPAVPHLL+ VQVE TFPDGTKL+T+HDPI+ ENG L+ AL GS LPVP+
Sbjct: 61 GQHLLGRRQVLPAVPHLLNAVQVEATFPDGTKLVTVHDPISRENGELQEALFGSLLPVPS 120
Query: 121 MDKFPGI-EDNNVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYL 179
+DKF EDN +PG I+ +TLN GRKAVILKV + GDRP+QVGSHYHFIEVNPYL
Sbjct: 121 LDKFAETKEDNRIPGEILXEDEXLTLNIGRKAVILKVTSKGDRPIQVGSHYHFIEVNPYL 180
Query: 180 VFDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAA 239
FDRRKA+GMRLNIAAGTA RFEPG+ K V L+SI G KVIRGGN I DGP ++ AA
Sbjct: 181 TFDRRKAYGMRLNIAAGTAVRFEPGDXKSVTLVSIEGNKVIRGGNAIADGPVNETNLEAA 240
Query: 240 MEAVKLRQFGNQEEANTSVGVAGED--RYLTTVISREAYANMYGPTTGDKIQLGDTELYA 297
M AV+ FG++EE + S G ED T I R+ YAN YGPTTGDKI+LGDT L A
Sbjct: 241 MHAVRSXGFGHEEEKDASEGFTKEDPNXPFNTFIHRKEYANKYGPTTGDKIRLGDTNLLA 300
Query: 298 EIESDFSVYGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHTGIFKADIGIK 357
EIE D+++YGDECVFGGGKVIR+GMGQ+ GH A SLDTVITNAVIID+TGI KADIGIK
Sbjct: 301 EIEKDYALYGDECVFGGGKVIRDGMGQSXGHPPAISLDTVITNAVIIDYTGIIKADIGIK 360
Query: 358 NGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAI 417
+GLI ++GKAGNPDIMN V NMIIGANTEVIAGE IVTAGAIDCHVH+ICPQL ++AI
Sbjct: 361 DGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICPQLVYEAI 420
Query: 418 ASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHE 477
+SGITTLVGGGTGPA GTRATTCTP+P+QM+LMLQSTDDLPLNFGFTGKG+S+KPDELHE
Sbjct: 421 SSGITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQSTDDLPLNFGFTGKGSSSKPDELHE 480
Query: 478 IIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRT 537
IIKAGAMGL LHEDWGSTPAAIDNCLT+AE +DIQ+NIHTDTLNE+GFVEH+IAAFKGRT
Sbjct: 481 IIKAGAMGLXLHEDWGSTPAAIDNCLTIAEHHDIQINIHTDTLNEAGFVEHSIAAFKGRT 540
Query: 538 IHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIP 597
IHTYHSEGAGGGHAPDIIKVCG+KNVLPSSTNPTRP TSNTIDEHLDMLMV HHL ++IP
Sbjct: 541 IHTYHSEGAGGGHAPDIIKVCGIKNVLPSSTNPTRPLTSNTIDEHLDMLMVXHHLDREIP 600
Query: 598 EDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGS 657
ED+AFA SRIR +TIAAED+L+D+GAISIISSDSQAMGR+GEVISRTWQTA KMK+Q G
Sbjct: 601 EDLAFAHSRIRKKTIAAEDVLNDIGAISIISSDSQAMGRVGEVISRTWQTADKMKAQTGP 660
Query: 658 FGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMV 717
++DNDN RIRRYIAKYTINPAIANGFSQ+VGSVEVGKLADLV+WKPSFFG KPEMV
Sbjct: 661 LKCDSSDNDNFRIRRYIAKYTINPAIANGFSQYVGSVEVGKLADLVMWKPSFFGTKPEMV 720
Query: 718 IKGGAIAWANMGDPNASIPTPEPV 741
IKGG +AWA++GDPNASIPTPEPV
Sbjct: 721 IKGGMVAWADIGDPNASIPTPEPV 744
>pdb|4H9M|A Chain A, The First Jack Bean Urease (Canavalia Ensiformis) Complex
Obtained At 1.52 Resolution
Length = 840
Score = 1182 bits (3058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/744 (77%), Positives = 651/744 (87%), Gaps = 3/744 (0%)
Query: 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDI 60
MKL+PRE EKLGLHNAGYLAQKRLARG+RLNYTEAVALIA+Q +E+ RDG+KTVA+LM +
Sbjct: 1 MKLSPREVEKLGLHNAGYLAQKRLARGVRLNYTEAVALIASQIMEYARDGEKTVAQLMXL 60
Query: 61 GKQILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPVPA 120
G+ +LGRRQVLPAVPHLL+ VQVE TFPDGTKL+T+HDPI+ ENG L+ AL GS LPVP+
Sbjct: 61 GQHLLGRRQVLPAVPHLLNAVQVEATFPDGTKLVTVHDPISRENGELQEALFGSLLPVPS 120
Query: 121 MDKFPGI-EDNNVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYL 179
+DKF EDN +PG I+ +TLN GRKAVILKV + GDRP+QVGSHYHFIEVNPYL
Sbjct: 121 LDKFAETKEDNRIPGEILXEDEXLTLNIGRKAVILKVTSKGDRPIQVGSHYHFIEVNPYL 180
Query: 180 VFDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAA 239
FDRRKA+GMRLNIAAGTA RFEPG+ K V L+SI G KVIRGGN I DGP ++ AA
Sbjct: 181 TFDRRKAYGMRLNIAAGTAVRFEPGDXKSVTLVSIEGNKVIRGGNAIADGPVNETNLEAA 240
Query: 240 MEAVKLRQFGNQEEANTSVGVAGEDRY--LTTVISREAYANMYGPTTGDKIQLGDTELYA 297
M AV+ FG++EE + S G ED T I R+ YAN YGPTTGDKI+LGDT L A
Sbjct: 241 MHAVRSXGFGHEEEKDASEGFTKEDPNCPFNTFIHRKEYANKYGPTTGDKIRLGDTNLLA 300
Query: 298 EIESDFSVYGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHTGIFKADIGIK 357
EIE D+++YGDECVFGGGKVIR+GMGQ+ GH A SLDTVITNAVIID+TGI KADIGIK
Sbjct: 301 EIEKDYALYGDECVFGGGKVIRDGMGQSXGHPPAISLDTVITNAVIIDYTGIIKADIGIK 360
Query: 358 NGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAI 417
+GLI ++GKAGNPDIMN V NMIIGANTEVIAGE IVTAGAIDCHVH+ICPQL ++AI
Sbjct: 361 DGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICPQLVYEAI 420
Query: 418 ASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHE 477
+SGITTLVGGGTGPA GTRATTCTP+P+QM+LMLQSTDDLPLNFGFTGKG+S+KPDELHE
Sbjct: 421 SSGITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQSTDDLPLNFGFTGKGSSSKPDELHE 480
Query: 478 IIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRT 537
IIKAGAMGL LHEDWGSTPAAIDNCLT+AE +DIQ+NIHTDTLNE+GFVEH+IAAFKGRT
Sbjct: 481 IIKAGAMGLXLHEDWGSTPAAIDNCLTIAEHHDIQINIHTDTLNEAGFVEHSIAAFKGRT 540
Query: 538 IHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIP 597
IHTYHSEGAGGGHAPDIIKVCG+KNVLPSSTNPTRP TSNTIDEHLDMLMV HHL ++IP
Sbjct: 541 IHTYHSEGAGGGHAPDIIKVCGIKNVLPSSTNPTRPLTSNTIDEHLDMLMVXHHLDREIP 600
Query: 598 EDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGS 657
ED+AFA SRIR +TIAAED+L+D+GAISIISSDSQAMGR+GEVISRTWQTA KMK+Q G
Sbjct: 601 EDLAFAHSRIRKKTIAAEDVLNDIGAISIISSDSQAMGRVGEVISRTWQTADKMKAQTGP 660
Query: 658 FGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMV 717
++DNDN RIRRYIAKYTINPAIANGFSQ+VGSVEVGKLADLV+WKPSFFG KPEMV
Sbjct: 661 LKCDSSDNDNFRIRRYIAKYTINPAIANGFSQYVGSVEVGKLADLVMWKPSFFGTKPEMV 720
Query: 718 IKGGAIAWANMGDPNASIPTPEPV 741
IKGG +AWA++GDPNASIPTPEPV
Sbjct: 721 IKGGMVAWADIGDPNASIPTPEPV 744
>pdb|1KRA|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/471 (67%), Positives = 375/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GLK+HEDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1A5K|C Chain C, K217e Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/471 (67%), Positives = 375/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 3 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 61
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 62 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 119
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 120 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 179
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL++HEDWG+TPAAID LTVA+E D
Sbjct: 180 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLEIHEDWGATPAAIDCALTVADEMD 239
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 240 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 299
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 300 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 359
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 360 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 419
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 420 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 470
>pdb|1A5M|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
Length = 566
Score = 637 bits (1642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/471 (67%), Positives = 374/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 3 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 61
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 62 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 119
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 120 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 179
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 180 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLAIHEDWGATPAAIDCALTVADEMD 239
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 240 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 299
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 300 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 359
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 360 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 419
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 420 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 470
>pdb|1FWJ|C Chain C, Klebsiella Aerogenes Urease, Native
pdb|1EJX|C Chain C, Crystal Structure Of Wild-Type Klebsiella Aerogenes Urease
At 100k
pdb|1EJW|C Chain C, Crystal Structure Of Wild-type Klebsiella Aerogenes Urease
At 298k
pdb|2KAU|C Chain C, The Crystal Structure Of Urease From Klebsiella Aerogenes
At 2.2 Angstroms Resolution
Length = 567
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/471 (67%), Positives = 374/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1EF2|A Chain A, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
pdb|4EP8|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 100 K
pdb|4EPB|C Chain C, Final Urease Structure For Radiation Damage Experiment At
100 K
pdb|4EPD|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 300 K
pdb|4EPE|C Chain C, Final Urease Structure For Radiation Damage Experiment At
300 K
Length = 566
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/471 (67%), Positives = 374/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 3 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 61
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 62 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 119
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 120 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 179
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 180 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADEMD 239
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 240 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 299
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 300 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 359
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 360 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 419
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 420 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 470
>pdb|1KRC|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/471 (67%), Positives = 374/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GLK+HEDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVC HL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVCAHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1A5O|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1A5L|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/471 (67%), Positives = 374/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 3 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 61
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 62 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 119
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 120 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 179
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 180 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLCIHEDWGATPAAIDCALTVADEMD 239
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 240 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 299
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 300 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 359
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 360 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 419
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 420 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 470
>pdb|1EJT|C Chain C, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 373/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL + EDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIQEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1EJV|C Chain C, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 373/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVC HL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVCQHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1EJR|C Chain C, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 373/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HE WG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEAWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1EJU|C Chain C, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 374/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVC+HL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVCNHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1EJS|C Chain C, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 374/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL ++EDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXINEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1FWI|C Chain C, Klebsiella Aerogenes Urease, H134a Variant
Length = 567
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 373/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID +H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTAIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1KRB|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 373/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL + EDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIAEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMVCHHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1FWA|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWB|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWE|C Chain C, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
Length = 567
Score = 633 bits (1633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 373/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMV HHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVAHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1FWG|C Chain C, Klebsiella Aerogenes Urease, C319s Variant
Length = 567
Score = 633 bits (1633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 373/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMV HHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVSHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1FWH|C Chain C, Klebsiella Aerogenes Urease, C319y Variant
Length = 567
Score = 632 bits (1630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 373/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMV HHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVYHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1FWF|C Chain C, Klebsiella Aerogenes Urease, C319d Variant
Length = 567
Score = 632 bits (1629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/471 (67%), Positives = 373/471 (79%), Gaps = 3/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+AYA+M+GPT GDK++L DTEL+ E+E D + YG+E FGGGKVIR+GMGQ
Sbjct: 4 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQG-QMLA 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
A +D V+TNA+I+DH GI KADIG+K+G I A+GKAGNPDI +V + IGA TEVIA
Sbjct: 63 ADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIA 120
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
E IVTAG ID H+H+ICPQ A +A+ SG+TT+VGGGTGPA GT ATTCTP P + M
Sbjct: 121 AEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
LQ+ D LP+N G GKGN ++PD L E + AG +GL +HEDWG+TPAAID LTVA+E D
Sbjct: 181 LQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADEMD 240
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
IQV +H+DTLNESGFVE T+AA GRTIHT+H+EGAGGGHAPDII C N+LPSSTNP
Sbjct: 241 IQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP 300
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NTIDEHLDMLMV HHL DI EDVAFAESRIR ETIAAED+LHD+GA S+ SSD
Sbjct: 301 TLPYTLNTIDEHLDMLMVDHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSD 360
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI RTWQ AH+MK QRG+ DNDN R++RYIAKYTINPA+ +G +
Sbjct: 361 SQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 420
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+EVGKLADLV+W P+FFG KP VIKGG IA A MGD NASIPTP+PV
Sbjct: 421 VGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPV 471
>pdb|1UBP|C Chain C, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|C Chain C, Structure Of Native Urease From Bacillus Pasteurii
pdb|3UBP|C Chain C, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|C Chain C, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1S3T|C Chain C, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|4AC7|C Chain C, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 570
Score = 621 bits (1602), Expect = e-178, Method: Compositional matrix adjust.
Identities = 296/472 (62%), Positives = 372/472 (78%), Gaps = 1/472 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
I+R+ YA YGPT GD+++L DT+L+ E+E D++ YGDE FGGGKV+REGMG+ +
Sbjct: 3 INRQQYAESYGPTVGDEVRLADTDLWIEVEKDYTTYGDEVNFGGGKVLREGMGENGTYTR 62
Query: 331 AKS-LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVI 389
++ LD ++TNA+I+D+TGI+KADIG+K+G IV +GK GNPDIM+ V PNMI+G TEVI
Sbjct: 63 TENVLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVI 122
Query: 390 AGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKL 449
A E IVTAG ID HVHFI P A+A+GITTL GGGTGPA+G++ATT TP P ++
Sbjct: 123 AAEGKIVTAGGIDTHVHFINPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEK 182
Query: 450 MLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEY 509
ML+ST+ LP+N G GKG+ + + E I AGA GL +HEDWG+TPA+ID LTVA+E
Sbjct: 183 MLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGLXIHEDWGATPASIDRSLTVADEA 242
Query: 510 DIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTN 569
D+QV IH+DTLNE+GF+E T+ A GR IH++H EGAGGGHAPDI+ + G NVLPSSTN
Sbjct: 243 DVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTN 302
Query: 570 PTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISS 629
PTRP+T NTIDEHLDMLMVCHHL ++IPEDVAFA+SRIR ETIAAEDILHD+G IS++S+
Sbjct: 303 PTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMST 362
Query: 630 DSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQ 689
D+ AMGR GE++ RTWQTA KMK QRG +DN R++RY++KYTINPAIA G +
Sbjct: 363 DALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAH 422
Query: 690 FVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+E GK ADLVLW+P FFG K + VIKGG IA+A +GDP+ASIPTP+PV
Sbjct: 423 EVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDPSASIPTPQPV 474
>pdb|1IE7|C Chain C, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
Length = 570
Score = 621 bits (1601), Expect = e-178, Method: Compositional matrix adjust.
Identities = 296/472 (62%), Positives = 371/472 (78%), Gaps = 1/472 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
I+R+ YA YGPT GD+++L DT+L+ E+E D++ YGDE FGGGKV+REGMG+ +
Sbjct: 3 INRQQYAESYGPTVGDEVRLADTDLWIEVEKDYTTYGDEVNFGGGKVLREGMGENGTYTR 62
Query: 331 AKS-LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVI 389
++ LD ++TNA+I+D+TGI+KADIG+K+G IV +GK GNPDIM+ V PNMI+G TEVI
Sbjct: 63 TENVLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVI 122
Query: 390 AGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKL 449
A E IVTAG ID HVHFI P A+A+GITTL GGGTGPA+G++ATT TP P ++
Sbjct: 123 AAEGKIVTAGGIDTHVHFINPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEK 182
Query: 450 MLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEY 509
ML+ST+ LP+N G GKG+ + + E I AGA GL +HEDWG+TPA+ID LTVA+E
Sbjct: 183 MLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGLXIHEDWGATPASIDRSLTVADEA 242
Query: 510 DIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTN 569
D+QV IH+DTLNE+GF+E T+ A GR IH++H EGAGGGHAPDI+ + G NVLPSSTN
Sbjct: 243 DVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTN 302
Query: 570 PTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISS 629
PTRP+T NTIDEHLDMLMVCHHL +IPEDVAFA+SRIR ETIAAEDILHD+G IS++S+
Sbjct: 303 PTRPFTVNTIDEHLDMLMVCHHLKNNIPEDVAFADSRIRPETIAAEDILHDLGIISMMST 362
Query: 630 DSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQ 689
D+ AMGR GE++ RTWQTA KMK QRG +DN R++RY++KYTINPAIA G +
Sbjct: 363 DALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAH 422
Query: 690 FVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGS+E GK ADLVLW+P FFG K + VIKGG IA+A +GDP+ASIPTP+PV
Sbjct: 423 EVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDPSASIPTPQPV 474
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 613 bits (1582), Expect = e-176, Method: Compositional matrix adjust.
Identities = 296/471 (62%), Positives = 370/471 (78%), Gaps = 1/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+ Y +MYGPTTGDK++LGDT+L AE+E D+++YG+E FGGGK +REGM Q+ +
Sbjct: 4 ISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQS-NNPS 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
+ LD +ITNA+I+D+TGI+KADIGIK+G I +GK GN D+ + V N+ +G TE +A
Sbjct: 63 KEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALA 122
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
GE IVTAG ID H+HFI PQ A ASG+TT++GGGTGPADGT ATT TP +K M
Sbjct: 123 GEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWM 182
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
L++ ++ +N GF KGN++ L + I+AGA+G +HEDWG+TP+AI++ L VA++YD
Sbjct: 183 LRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFXIHEDWGTTPSAINHALDVADKYD 242
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
+QV IHTDTLNE+G VE T+AA GRT+HT+H+EGAGGGHAPDIIKV G N+LP+STNP
Sbjct: 243 VQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNP 302
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T P+T NT EH+DMLMVCHHL K I EDV FA+SRIR +TIAAED LHDMGA SI SSD
Sbjct: 303 TIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSD 362
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI+RTWQTA K K + G DNDN RI+RY++KYTINPAIA+G S++
Sbjct: 363 SQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEY 422
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGSVEVGK+ADLVLW P+FFG KP M+IKGG IA + MGD NASIPTP+PV
Sbjct: 423 VGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPV 473
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 611 bits (1576), Expect = e-175, Method: Compositional matrix adjust.
Identities = 295/471 (62%), Positives = 369/471 (78%), Gaps = 1/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
ISR+ Y +MYGPTTGDK++LGDT+L AE+E D+++YG+E FGGGK +REGM Q+ +
Sbjct: 4 ISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQS-NNPS 62
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
+ LD +ITNA+I+D+TGI+KADIGIK+G I +GK GN D+ + V N+ +G TE +A
Sbjct: 63 KEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALA 122
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
GE IVTAG ID H+HFI PQ A ASG+TT++GGGTGPADGT ATT TP +K M
Sbjct: 123 GEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWM 182
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
L++ ++ +N GF KGN++ L + I+AGA+G +HEDWG+TP+AI++ L VA++YD
Sbjct: 183 LRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFXIHEDWGTTPSAINHALDVADKYD 242
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
+QV IHTDTLNE+G VE T+AA GRT+HT+H+EGAGGGHAPDIIKV G N+LP+STNP
Sbjct: 243 VQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNP 302
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T P+T NT EH+DMLMVCHH K I EDV FA+SRIR +TIAAED LHDMGA SI SSD
Sbjct: 303 TIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSD 362
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR+GEVI+RTWQTA K K + G DNDN RI+RY++KYTINPAIA+G S++
Sbjct: 363 SQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEY 422
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
VGSVEVGK+ADLVLW P+FFG KP M+IKGG IA + MGD NASIPTP+PV
Sbjct: 423 VGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPV 473
>pdb|3QGA|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGK|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
Length = 568
Score = 607 bits (1566), Expect = e-174, Method: Compositional matrix adjust.
Identities = 284/471 (60%), Positives = 362/471 (76%), Gaps = 1/471 (0%)
Query: 271 ISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY 330
+ R+ Y N YGPTTGDK++LGDT+L+AE+E D++VYG+E FG GK IREGMGQ+
Sbjct: 3 MKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPD- 61
Query: 331 AKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIA 390
+LD VITNA+IID+TGI+KADIGIKNG I +GKAGN D+ + V P+M++G TE +A
Sbjct: 62 ENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALA 121
Query: 391 GERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLM 450
GE I+TAG ID H HF+ PQ A+A+G+TT+ GGGTGP DGT ATT TP + M
Sbjct: 122 GEGMIITAGGIDSHTHFLSPQQFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRM 181
Query: 451 LQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD 510
L++ ++ +N G GKGNS+ +L E +KAGA+G LHEDWG+TP+AID+CL+VA+EYD
Sbjct: 182 LRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFXLHEDWGTTPSAIDHCLSVADEYD 241
Query: 511 IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNP 570
+QV IHTDT+NE+G+V+ T+ A GR IH YH EGAGGGH+PD+I + G N+LPSST P
Sbjct: 242 VQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTP 301
Query: 571 TRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSD 630
T PYT NT+ EHLDMLM CHHL K I ED+ F++SRIR +IAAED LHDMG I++ SSD
Sbjct: 302 TIPYTINTVAEHLDMLMTCHHLDKRIREDLQFSQSRIRPGSIAAEDTLHDMGVIAMTSSD 361
Query: 631 SQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690
SQAMGR GEVI RTWQTA K K + G DNDN RI+RYI+KYTINPAI +G S++
Sbjct: 362 SQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEY 421
Query: 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPV 741
+GSVE GK+ADLV+W P+FFG KP+++IKGG + ++ MGD NAS+PTP+PV
Sbjct: 422 IGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPV 472
>pdb|1E9Y|A Chain A, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
pdb|1E9Z|A Chain A, Crystal Structure Of Helicobacter Pylori Urease
Length = 238
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/270 (45%), Positives = 156/270 (57%), Gaps = 34/270 (12%)
Query: 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDI 60
MKLTP+E +KL LH AG LA+KR +G++LNY EAVALI+ +E R G KT AELM
Sbjct: 1 MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQE 60
Query: 61 GKQILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPVPA 120
G+ +L V+ V ++ V +E FPDGTKL+T+H PI + NG L
Sbjct: 61 GRTLLKPDDVMDGVASMIHEVGIEAMFPDGTKLVTVHTPIEA-NGKL------------- 106
Query: 121 MDKFPGIEDNNVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLV 180
VPG + IT+N G+KAV +KV N GDRPVQ+GSH+HF EVN L
Sbjct: 107 -----------VPGELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLD 155
Query: 181 FDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAAM 240
FDR K FG RL+IAAGTA RFEPGE K V+LI IGG + I G N +VD D+ A+
Sbjct: 156 FDREKTFGKRLDIAAGTAVRFEPGEEKSVELIDIGGNRRIFGFNALVDRQADNESKKIAL 215
Query: 241 EAVKLRQFGNQEEANTSVGVAGEDRYLTTV 270
K R F G +D Y+ T+
Sbjct: 216 HRAKERGFH---------GAKSDDNYVKTI 236
>pdb|3QGA|A Chain A, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|D Chain D, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|G Chain G, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|J Chain J, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|M Chain M, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|P Chain P, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGK|A Chain A, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|D Chain D, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|G Chain G, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|J Chain J, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|M Chain M, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|P Chain P, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
Length = 225
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 137/250 (54%), Gaps = 31/250 (12%)
Query: 2 KLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIG 61
KLTP+E EK L+ AG +A+KR GL+LN EA+A I+ ++ R G KTVA+LM+
Sbjct: 2 KLTPKEQEKFLLYYAGEVARKRKEEGLKLNQPEAIAYISAHIMDEARRGKKTVAQLMEEC 61
Query: 62 KQILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITIHDPIASEN---GNLELALHGSFLPV 118
L + +V+P V +++ + VE FPDGTKL+T++ PI ++ G ++ A
Sbjct: 62 VHFLKKDEVMPGVGNMVPDLGVEANFPDGTKLVTVNWPIEPDDFKAGEIKFA-------- 113
Query: 119 PAMDKFPGIEDNNVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPY 178
DK I LN G++ LKV N G + + VGSH+HF E N
Sbjct: 114 --SDK------------------DIELNAGKEITELKVTNKGPKSLHVGSHFHFFEANRA 153
Query: 179 LVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSA 238
L FDR KA+G RL+I +G R GE+K V LI IGG K I G NG+++G DD
Sbjct: 154 LEFDREKAYGKRLDIPSGNTLRIGAGETKTVHLIPIGGSKKIIGMNGLLNGIADDLHKQK 213
Query: 239 AMEAVKLRQF 248
A+E K F
Sbjct: 214 ALEKAKHHGF 223
>pdb|2KAU|A Chain A, The Crystal Structure Of Urease From Klebsiella Aerogenes
At 2.2 Angstroms Resolution
pdb|1KRC|A Chain A, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
pdb|1KRB|A Chain A, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
pdb|1KRA|A Chain A, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
pdb|1FWA|A Chain A, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWB|A Chain A, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|A Chain A, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|A Chain A, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWE|A Chain A, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
pdb|1FWF|A Chain A, Klebsiella Aerogenes Urease, C319d Variant
pdb|1FWG|A Chain A, Klebsiella Aerogenes Urease, C319s Variant
pdb|1FWH|A Chain A, Klebsiella Aerogenes Urease, C319y Variant
pdb|1FWI|A Chain A, Klebsiella Aerogenes Urease, H134a Variant
pdb|1FWJ|A Chain A, Klebsiella Aerogenes Urease, Native
pdb|1A5K|A Chain A, K217e Variant Of Klebsiella Aerogenes Urease
pdb|1A5L|A Chain A, K217c Variant Of Klebsiella Aerogenes Urease
pdb|1A5M|A Chain A, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|A Chain A, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1A5O|A Chain A, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1EF2|C Chain C, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
pdb|1EJR|A Chain A, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
pdb|1EJS|A Chain A, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
pdb|1EJT|A Chain A, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
pdb|1EJU|A Chain A, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
pdb|1EJV|A Chain A, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
pdb|1EJX|A Chain A, Crystal Structure Of Wild-Type Klebsiella Aerogenes Urease
At 100k
pdb|1EJW|A Chain A, Crystal Structure Of Wild-type Klebsiella Aerogenes Urease
At 298k
pdb|4EP8|A Chain A, Initial Urease Structure For Radiation Damage Experiment
At 100 K
pdb|4EPB|A Chain A, Final Urease Structure For Radiation Damage Experiment At
100 K
pdb|4EPD|A Chain A, Initial Urease Structure For Radiation Damage Experiment
At 300 K
pdb|4EPE|A Chain A, Final Urease Structure For Radiation Damage Experiment At
300 K
Length = 100
Score = 115 bits (289), Expect = 7e-26, Method: Composition-based stats.
Identities = 55/100 (55%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDI 60
M+LTPRE +KL L A +A++RLARGL+LNY E+VALI+ +E RDG K+VA LM+
Sbjct: 1 MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDG-KSVASLMEE 59
Query: 61 GKQILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITIHDPI 100
G+ +L R QV+ VP ++ +QVE TFPDG+KL+T+H+PI
Sbjct: 60 GRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPI 99
>pdb|2KAU|B Chain B, The Crystal Structure Of Urease From Klebsiella Aerogenes
At 2.2 Angstroms Resolution
pdb|1KRC|B Chain B, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
pdb|1KRB|B Chain B, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
pdb|1KRA|B Chain B, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
pdb|1FWA|B Chain B, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWB|B Chain B, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|B Chain B, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|B Chain B, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWE|B Chain B, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
pdb|1FWF|B Chain B, Klebsiella Aerogenes Urease, C319d Variant
pdb|1FWG|B Chain B, Klebsiella Aerogenes Urease, C319s Variant
pdb|1FWH|B Chain B, Klebsiella Aerogenes Urease, C319y Variant
pdb|1FWI|B Chain B, Klebsiella Aerogenes Urease, H134a Variant
pdb|1FWJ|B Chain B, Klebsiella Aerogenes Urease, Native
Length = 106
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 66/101 (65%)
Query: 132 VPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRL 191
+PG G I LN GR + V N GDRP+QVGSHYHF EVNP L FDR++A G RL
Sbjct: 2 IPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRL 61
Query: 192 NIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTD 232
NI AGTA RFEPG+ + V+L++ G + + G G V GP +
Sbjct: 62 NIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPLE 102
>pdb|3UBP|A Chain A, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|A Chain A, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|2UBP|A Chain A, Structure Of Native Urease From Bacillus Pasteurii
Length = 101
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDI 60
M L P E EKL + A L +R ARGL+LNY EAVA+I + +E RDG KTVA LM+
Sbjct: 2 MHLNPAEKEKLQIFLASELLLRRKARGLKLNYPEAVAIITSFIMEGARDG-KTVAMLMEE 60
Query: 61 GKQILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITIHDPIA 101
GK +L R V+ VP ++D +Q E TFPDGTKL+T+H+PI+
Sbjct: 61 GKHVLTRDDVMEGVPEMIDDIQAEATFPDGTKLVTVHNPIS 101
>pdb|1A5K|B Chain B, K217e Variant Of Klebsiella Aerogenes Urease
pdb|1A5L|B Chain B, K217c Variant Of Klebsiella Aerogenes Urease
pdb|1A5M|B Chain B, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|B Chain B, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1A5O|B Chain B, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1EF2|B Chain B, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
pdb|1EJR|B Chain B, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
pdb|1EJS|B Chain B, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
pdb|1EJT|B Chain B, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
pdb|1EJU|B Chain B, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
pdb|1EJV|B Chain B, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
pdb|1EJX|B Chain B, Crystal Structure Of Wild-Type Klebsiella Aerogenes Urease
At 100k
pdb|1EJW|B Chain B, Crystal Structure Of Wild-type Klebsiella Aerogenes Urease
At 298k
pdb|4EP8|B Chain B, Initial Urease Structure For Radiation Damage Experiment
At 100 K
pdb|4EPB|B Chain B, Final Urease Structure For Radiation Damage Experiment At
100 K
pdb|4EPD|B Chain B, Initial Urease Structure For Radiation Damage Experiment
At 300 K
pdb|4EPE|B Chain B, Final Urease Structure For Radiation Damage Experiment At
300 K
Length = 101
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 65/99 (65%)
Query: 132 VPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRL 191
+PG G I LN GR + V N GDRP+QVGSHYHF EVNP L FDR++A G RL
Sbjct: 2 IPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRL 61
Query: 192 NIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGP 230
NI AGTA RFEPG+ + V+L++ G + + G G V GP
Sbjct: 62 NIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGP 100
>pdb|3UBP|B Chain B, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|B Chain B, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1IE7|B Chain B, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|1S3T|B Chain B, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|4AC7|B Chain B, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 126
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 67/102 (65%)
Query: 132 VPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRL 191
VPG G I +N GR+ ++V NTGDRP+QVGSH HF+EVN L+FDR + G RL
Sbjct: 8 VPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRL 67
Query: 192 NIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDD 233
NI +GTA RFEPGE V+L +GG + + G + + +G D+
Sbjct: 68 NIPSGTAARFEPGEEMEVELTELGGNREVFGISDLTNGSVDN 109
>pdb|1UBP|B Chain B, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|B Chain B, Structure Of Native Urease From Bacillus Pasteurii
Length = 122
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 67/102 (65%)
Query: 132 VPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRL 191
VPG G I +N GR+ ++V NTGDRP+QVGSH HF+EVN L+FDR + G RL
Sbjct: 4 VPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRL 63
Query: 192 NIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDD 233
NI +GTA RFEPGE V+L +GG + + G + + +G D+
Sbjct: 64 NIPSGTAARFEPGEEMEVELTELGGNREVFGISDLTNGSVDN 105
>pdb|1IE7|A Chain A, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|1S3T|A Chain A, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|1UBP|A Chain A, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|4AC7|A Chain A, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 100
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 69/99 (69%), Gaps = 1/99 (1%)
Query: 3 LTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGK 62
L P E EKL + A L +R ARGL+LNY EAVA+I + +E RDG KTVA LM+ GK
Sbjct: 3 LNPAEKEKLQIFLASELLLRRKARGLKLNYPEAVAIITSFIMEGARDG-KTVAMLMEEGK 61
Query: 63 QILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITIHDPIA 101
+L R V+ VP ++D +Q E TFPDGTKL+T+H+PI+
Sbjct: 62 HVLTRDDVMEGVPEMIDDIQAEATFPDGTKLVTVHNPIS 100
>pdb|2FVH|A Chain A, Crystal Structure Of Rv1848, A Urease Gamma Subunit Urea
(Urea Amidohydrolase), From Mycobacterium Tuberculosis
pdb|2FVH|B Chain B, Crystal Structure Of Rv1848, A Urease Gamma Subunit Urea
(Urea Amidohydrolase), From Mycobacterium Tuberculosis
pdb|2FVH|C Chain C, Crystal Structure Of Rv1848, A Urease Gamma Subunit Urea
(Urea Amidohydrolase), From Mycobacterium Tuberculosis
Length = 120
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Query: 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDI 60
M+LTP E E+L L A LA++R ARGLRLN+ EA+A+IA LE RDG +TVAELM
Sbjct: 21 MRLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDG-RTVAELMAS 79
Query: 61 GKQILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITIHDPIA 101
G+++LGR V+ VP +L VQVE TFPDGTKL+T+H PIA
Sbjct: 80 GREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 120
>pdb|4FUR|A Chain A, Crystal Structure Of Urease Subunit Gamma 2 From Brucella
Melitensis Biovar Abortus 2308
pdb|4FUR|B Chain B, Crystal Structure Of Urease Subunit Gamma 2 From Brucella
Melitensis Biovar Abortus 2308
pdb|4FUR|C Chain C, Crystal Structure Of Urease Subunit Gamma 2 From Brucella
Melitensis Biovar Abortus 2308
pdb|4FUR|D Chain D, Crystal Structure Of Urease Subunit Gamma 2 From Brucella
Melitensis Biovar Abortus 2308
pdb|4FUR|E Chain E, Crystal Structure Of Urease Subunit Gamma 2 From Brucella
Melitensis Biovar Abortus 2308
pdb|4FUR|F Chain F, Crystal Structure Of Urease Subunit Gamma 2 From Brucella
Melitensis Biovar Abortus 2308
Length = 104
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/100 (45%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDI 60
M LTPRE +KL +H +A KR +GL+LN+ EAVA+++ L+ R+G KTV E+MD
Sbjct: 5 MHLTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVLDGAREG-KTVEEVMDG 63
Query: 61 GKQILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITIHDPI 100
+ +L V+ VP LL +QVE F DG++L+++H+PI
Sbjct: 64 ARSVLKADDVMDGVPDLLPLIQVEAVFSDGSRLVSLHNPI 103
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 335 DTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERF 394
D +I N +I + I+ A+I + NG + + + +P + +EVI E
Sbjct: 4 DLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSL------------GSEVIDAEGA 51
Query: 395 IVTAGAIDCHVHFICP------------QLAHDAIASGITTLVGGGT 429
+T G ID HVH P A+A G TT+V T
Sbjct: 52 FITPGGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFST 98
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGER 393
D ++ N ++ GI +ADI +K+G + A+ A D+ A+ + AG +
Sbjct: 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAI-SADTSDVE----------ASRTIDAGGK 50
Query: 394 FIVTAGAIDCHVHFICPQL----------AHDAIASGITTLVGGGTGPADGTRATTCTPA 443
F++ G +D HVH I L + A GITT++ P TT
Sbjct: 51 FVM-PGVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTII---EMPITFPPTTTLDAF 106
Query: 444 PSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGL 486
+ K Q+ L ++F G G E+ ++ AGA+G
Sbjct: 107 LEKKK---QAGQRLKVDFALYGGGVPGNLPEIRKMHDAGAVGF 146
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 332 KSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAG 391
K D +I ++ ++ T ++AD+ I+NG++ A+ + G+ I +D P I G
Sbjct: 4 KRFDLIIRSSTVVTETTTYRADVAIRNGIVSAITEPGS--ISSDDGP---------AIDG 52
Query: 392 ERFIVTAGAIDCHVHFICP-QLAHDAIASGITTLVGGG-TGPAD---GTRATTCTPAPSQ 446
+ G +D HVHF P + + ASG +L GG T D + T T
Sbjct: 53 TGLHLFPGMVDVHVHFNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELD 112
Query: 447 MKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLK 487
K L + L +++ F G D L ++ G +G K
Sbjct: 113 KKRQLANEKSL-VDYRFWGGLVPGNIDHLQDLHDGGVIGFK 152
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGER 393
+D +I N I+ GI +AD+GIK+G I +G A P A + A R
Sbjct: 1 MDIIIKNGTIVTADGISRADLGIKDGKITQIGGALGP-------------AERTIDAAGR 47
Query: 394 FIVTAGAIDCHVH 406
++ G ID H H
Sbjct: 48 YVF-PGGIDVHTH 59
>pdb|3GIP|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIP|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIQ|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate.
pdb|3GIQ|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate
Length = 480
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 26/120 (21%)
Query: 331 AKSLDTVITNAVIIDHTGI--FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEV 388
A+ LD IT IID TG +AD+G+++G I A+G+ G HP +
Sbjct: 4 AEKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELG-------AHP----ARHAWD 52
Query: 389 IAGERFIVTAGAIDCHVH----FICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAP 444
+G+ IV G ID H H F+ + GITT+V G G + PAP
Sbjct: 53 ASGK--IVAPGFIDVHGHDDLMFVEKPDLRWKTSQGITTVVVGNCG-------VSAAPAP 103
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 662 AADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAK 713
A + D L+I T+NPA G +GS+E GK ADLV+W F K
Sbjct: 327 AKEEDLLKI------LTVNPAKILGLEDRIGSIEPGKDADLVVWSGHPFDXK 372
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 337 VITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIV 396
+I N +++ FK+D+ ++NG+I + K P +V+ ++
Sbjct: 11 LIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPK------------EGIKVVDATDKLL 58
Query: 397 TAGAIDCHVHFICP---QLAHDAIASGITTLVGGGT 429
G ID H HF P ++ D G V GGT
Sbjct: 59 LPGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGT 94
>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|B Chain B, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|C Chain C, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|D Chain D, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
Length = 473
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 61/163 (37%), Gaps = 28/163 (17%)
Query: 333 SLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGE 392
S D +I N +I DI +K G I A+G+ +G EV
Sbjct: 22 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQD--------------LGDAKEVXDAS 67
Query: 393 RFIVTAGAIDCHVHFICPQLAH---------DAIASGITTLVGGGTGPADGTRATTCTPA 443
+V+ G +D H H P +H A GITT + P + AT A
Sbjct: 68 GLVVSPGXVDAHTHISEPGRSHWEGYETGTRAAAKGGITTXI---EXPLNQLPATV-DRA 123
Query: 444 PSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGL 486
++K + L ++ G S D LHE+ + G +G
Sbjct: 124 SIELKFD-AAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGF 165
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGER 393
+ TVI I+ +KAD+ ++ G IV +G PN+ + E +
Sbjct: 1 MSTVIKGGTIVTADLTYKADVKVEGGRIVEIG------------PNL---SGAETLDATG 45
Query: 394 FIVTAGAIDCHVHFICPQL---AHDAIASGITTLVGGGT 429
V G ID H H P + + D SG + GGT
Sbjct: 46 CYVMPGGIDPHTHLEMPFMGTYSSDDFESGTRAALAGGT 84
>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
Length = 451
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 672 RYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKP 714
R + T+N A A G + +GS+E GK ADLV + S +P
Sbjct: 344 RALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQP 386
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 337 VITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIV 396
+I I++ F ADI +++GLI +G+ N+I+ + I +V
Sbjct: 29 LIKGGKIVNDDQSFYADIYMEDGLIKQIGE------------NLIVPGGVKTIEAHSRMV 76
Query: 397 TAGAIDCHVHFICP---QLAHDAIASGITTLVGGGT 429
G ID H F P + D G + GGT
Sbjct: 77 IPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGT 112
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 334 LDTVITNAVIIDHTGIFKA--DIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAG 391
L ++ N +ID + + DI ++NG I + K I+ E+I
Sbjct: 47 LKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKN-------------ILVPEAEIIDA 93
Query: 392 ERFIVTAGAIDCHVHFICP-QLAHDAIASGITTLVGGG 428
+ IV G ID HVH P Q + I SG V GG
Sbjct: 94 KGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGG 131
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 334 LDTVITNAVIIDHTGIFKA--DIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAG 391
L ++ N +ID + + DI ++NG I + K I+ E+I
Sbjct: 2 LKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKN-------------ILVPEAEIIDA 48
Query: 392 ERFIVTAGAIDCHVHFICP-QLAHDAIASGITTLVGGG 428
+ IV G ID HVH P Q + I SG V GG
Sbjct: 49 KGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGG 86
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 78/210 (37%), Gaps = 27/210 (12%)
Query: 356 IKNGLIVALGKAGNPDIMNDVHPNMIIGAN------TEVIAGERFIVTAGAIDCHVHFIC 409
IKNG I+ DI + IG N TEVI V G ID HVH
Sbjct: 4 IKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHIYL 63
Query: 410 P---QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKL----MLQSTDDLPLNFG 462
P A D +G + GGT T C P+ + L + +S +
Sbjct: 64 PFMATFAKDTHETGSKAALMGGT----TTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCD 119
Query: 463 FTGKGNSAKPDE-----LHEIIKAG----AMGLKLHEDWGSTPAAIDNCLTVAEEYDIQV 513
+T +K DE L EI+ G + L +G + L +A+E + V
Sbjct: 120 YTFHMAVSKFDEKTEGQLREIVADGISSFXIFLSYKNFFGVDDGEMYQTLRLAKELGVIV 179
Query: 514 NIHTDTLNESGFVEHTIAAFKGRTIHTYHS 543
H + G ++ + + +G+T +H
Sbjct: 180 TAHCENAELVGRLQQKLLS-EGKTGPEWHE 208
>pdb|3FIH|E Chain E, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IY8|E Chain E, Leishmania Tarentolae Mitonchondrial Ribosome Small
Subunit
pdb|2WWL|E Chain E, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 30s, The P-Site
Trna And The Tnac Leader Peptide (Part 1 Of 2).
pdb|3OFO|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFP|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3OFA|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The First 70s Ribosome.
pdb|3OFB|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The Second 70s Ribosome.
pdb|3OFX|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFY|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome
pdb|3OAQ|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OAR|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|2YKR|E Chain E, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
pdb|4A2I|E Chain E, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
pdb|3J18|E Chain E, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
pdb|4GD1|E Chain E, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|4GD2|E Chain E, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
Length = 150
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 496 PAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAG---GGHAP 552
PAAI + A I V ++ TL HT R SEG G GG
Sbjct: 48 PAAIQKAMEKARRNMINVALNNGTLQHPVKGVHT----GSRVFMQPASEGTGIIAGGAMR 103
Query: 553 DIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDML 586
+++V GV NVL + T P N + +D L
Sbjct: 104 AVLEVAGVHNVLAKAYGSTNPI--NVVRATIDGL 135
>pdb|1RJP|A Chain A, Crystal Structure Of D-Aminoacylase In Complex With 100mm
Cucl2
pdb|1RK6|A Chain A, The Enzyme In Complex With 50mm Cdcl2
pdb|1V51|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 331 AKSLDTVITNAVIIDHTGI--FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEV 388
A D +++ +ID T AD+G++ I A+G +
Sbjct: 18 ATPFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRID----------- 66
Query: 389 IAGERFIVTAGAIDCHVHFICPQLAHD----AIASGITTLVGGGTGPADGTRATTCTPAP 444
+AG+ +V+ G ID H H L H I+ G+TT+V G G + A PAP
Sbjct: 67 VAGK--VVSPGFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAP 124
>pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From
Porphyromonas Gingivalis
Length = 452
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 6/138 (4%)
Query: 387 EVIAGERFIVTAGAIDCHVHFICPQLAHDA-IASGITTLVGGG-TGPADGTRATTCTPAP 444
EVI + G ID VHF P L H A IAS V GG T D T
Sbjct: 49 EVIECSGLRLFPGCIDDQVHFREPGLTHKATIASESRAAVAGGVTSFXDXPNTNPPTTXW 108
Query: 445 SQMKLMLQ-STDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCL 503
++ Q D N+GF G + DE+ + K GL L + +DN
Sbjct: 109 ERLLEKRQIGADTAWANYGFFFGGTNDNIDEIKRVDKHLVPGLXLFLGSSTGNXLVDNKE 168
Query: 504 TVAE---EYDIQVNIHTD 518
T+ + E D+ + H +
Sbjct: 169 TLEKIFGECDLLIATHCE 186
>pdb|1RJQ|A Chain A, The Crystal Structure Of The D-Aminoacylase Mutant D366a
pdb|1RJR|A Chain A, The Crystal Structure Of The D-Aminoacylase D366a Mutant
In Complex With 100mm Zncl2
pdb|1RK5|A Chain A, The D-Aminoacylase Mutant D366a In Complex With 100mm
Cucl2
Length = 496
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 331 AKSLDTVITNAVIIDHTGI--FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEV 388
A D +++ +ID T AD+G++ I A+G +
Sbjct: 18 ATPFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRID----------- 66
Query: 389 IAGERFIVTAGAIDCHVHFICPQLAHD----AIASGITTLVGGGTGPADGTRATTCTPAP 444
+AG+ +V+ G ID H H L H I+ G+TT+V G G + A PAP
Sbjct: 67 VAGK--VVSPGFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAP 124
>pdb|3E1A|S Chain S, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
pdb|3E1C|S Chain S, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
Length = 159
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 496 PAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAG---GGHAP 552
PAAI + A I V ++ TL HT R SEG G GG
Sbjct: 57 PAAIQKAMEKARRNMINVALNNGTLQHPVKGVHT----GSRVFMQPASEGTGIIAGGAMR 112
Query: 553 DIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDML 586
+++V GV NVL + T P N + +D L
Sbjct: 113 AVLEVAGVHNVLAKAYGSTNPI--NVVRATIDGL 144
>pdb|1VS5|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS7|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|3I1M|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1O|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Q|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1S|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Z|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I21|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KC4|E Chain E, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
In Pdb Entry 3kcr
pdb|3OR9|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The First
70s Ribosome.
pdb|3ORA|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3IZV|I Chain I, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|I Chain I, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
pdb|3SFS|E Chain E, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOQ|E Chain E, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAQ|E Chain E, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAS|E Chain E, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 167
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 496 PAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAG---GGHAP 552
PAAI + A I V ++ TL HT R SEG G GG
Sbjct: 57 PAAIQKAMEKARRNMINVALNNGTLQHPVKGVHT----GSRVFMQPASEGTGIIAGGAMR 112
Query: 553 DIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDML 586
+++V GV NVL + T P N + +D L
Sbjct: 113 AVLEVAGVHNVLAKAYGSTNPI--NVVRATIDGL 144
>pdb|1V4Y|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 331 AKSLDTVITNAVIIDHTGI--FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEV 388
A D +++ +ID T AD+G++ I A+G +
Sbjct: 18 ATPFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRID----------- 66
Query: 389 IAGERFIVTAGAIDCHVHFICPQLAHD----AIASGITTLVGGGTGPADGTRATTCTPAP 444
+AG+ +V+ G ID H H L H I+ G+TT+V G G + A PAP
Sbjct: 67 VAGK--VVSPGFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAP 124
>pdb|2GY9|E Chain E, Structure Of The 30s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYB|E Chain E, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 148
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 496 PAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAG---GGHAP 552
PAAI + A I V ++ TL HT R SEG G GG
Sbjct: 48 PAAIQKAMEKARRNMINVALNNGTLQHPVKGVHT----GSRVFMQPASEGTGIIAGGAMR 103
Query: 553 DIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDML 586
+++V GV NVL + T P N + +D L
Sbjct: 104 AVLEVAGVHNVLAKAYGSTNPI--NVVRATIDGL 135
>pdb|1P6G|E Chain E, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P87|E Chain E, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AVY|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AW7|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|2I2P|E Chain E, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2U|E Chain E, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QOU|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The First 70s Ribosome,
With Spectinomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|2QOW|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The Second 70s
Ribosome, With Spectinomycin Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2QOY|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
First 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QP0|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QAL|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAN|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QB9|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBB|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBD|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
First 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBF|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBH|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The First 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBJ|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The Second 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4K|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The First 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4M|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The Second 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2VHO|E Chain E, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 3 Of 4)
pdb|2VHP|E Chain E, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 4 Of 4)
pdb|3DF1|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3DF3|E Chain E, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3J00|E Chain E, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|4ADV|E Chain E, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
pdb|3J0U|H Chain H, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0V|H Chain H, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0X|H Chain H, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J0Z|H Chain H, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J10|H Chain H, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J13|G Chain G, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 3 Of The Six
Classes)
Length = 166
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 496 PAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAG---GGHAP 552
PAAI + A I V ++ TL HT R SEG G GG
Sbjct: 56 PAAIQKAMEKARRNMINVALNNGTLQHPVKGVHT----GSRVFMQPASEGTGIIAGGAMR 111
Query: 553 DIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDML 586
+++V GV NVL + T P N + +D L
Sbjct: 112 AVLEVAGVHNVLAKAYGSTNPI--NVVRATIDGL 143
>pdb|1M7J|A Chain A, Crystal Structure Of D-Aminoacylase Defines A Novel Subset
Of Amidohydrolases
Length = 484
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 331 AKSLDTVITNAVIIDHTGI--FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEV 388
A D +++ +ID T AD+G++ I A+G +
Sbjct: 6 ATPFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRID----------- 54
Query: 389 IAGERFIVTAGAIDCHVHFICPQLAHD----AIASGITTLVGGGTGPADGTRATTCTPAP 444
+AG+ +V+ G ID H H L H I+ G+TT+V G G + A PAP
Sbjct: 55 VAGK--VVSPGFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAP 112
>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
Length = 421
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 14/67 (20%)
Query: 658 FGPSAADNDNLRIRRYIAKY-------------TINPAIANGFSQFVGSVEVGKLADLVL 704
F P ++ +N+++ IA T+N A A G + G ++ G+ ADLV+
Sbjct: 325 FNPGSSPTENIQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVI 384
Query: 705 WK-PSFF 710
W+ P++
Sbjct: 385 WQAPNYM 391
>pdb|1NO7|A Chain A, Structure Of The Large Protease Resistant Upper Domain Of
Vp5, The Major Capsid Protein Of Herpes Simplex Virus-1
pdb|1NO7|B Chain B, Structure Of The Large Protease Resistant Upper Domain Of
Vp5, The Major Capsid Protein Of Herpes Simplex Virus-1
Length = 604
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 103 ENGNLELALHGSFLPVPAMDKFPGIEDNNVPGRIIPGGGSITLNHGRKAVILKVVNTGDR 162
+N NL L LH PA D F G+ D +PG +P G G +VVN G+
Sbjct: 85 DNANLALELH------PAFDFFVGVADVELPGGDVPPAGP-----GEIQATWRVVN-GNL 132
Query: 163 PVQV 166
P+ +
Sbjct: 133 PLAL 136
>pdb|1ORB|A Chain A, Active Site Structural Features For Chemically Modified
Forms Of Rhodanese
Length = 296
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 629 SDSQAMGRIG---EVISRTWQTAHKMKSQRGSFG---PSAADNDNLRIRRYIAKYTINPA 682
++S G++G V+ +W + ++++ P A+ D R + Y +
Sbjct: 16 AESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLP 75
Query: 683 IANGFSQFVGSVEVGK---------------LADLVLWKPSFFGAKPEMVIKGGAIAWAN 727
GF+ +VGS+ + A V W FG + V+ GG W
Sbjct: 76 SEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLK 135
Query: 728 MGDPNASIPT-PEP 740
G P S P+ PEP
Sbjct: 136 EGHPVTSEPSRPEP 149
>pdb|1DP2|A Chain A, Crystal Structure Of The Complex Between Rhodanese And
Lipoate
Length = 293
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 629 SDSQAMGRIG---EVISRTWQTAHKMKSQRGSFG---PSAADNDNLRIRRYIAKYTINPA 682
++S G++G V+ +W + ++++ P A+ D R + Y +
Sbjct: 16 AESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLP 75
Query: 683 IANGFSQFVGSVEVGK---------------LADLVLWKPSFFGAKPEMVIKGGAIAWAN 727
GF+ +VGS+ + A V W FG + V+ GG W
Sbjct: 76 SEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLK 135
Query: 728 MGDPNASIPT-PEP 740
G P S P+ PEP
Sbjct: 136 EGHPVTSEPSRPEP 149
>pdb|1BOH|A Chain A, Sulfur-Substituted Rhodanese (Orthorhombic Form)
pdb|1BOI|A Chain A, N-Terminally Truncated Rhodanese
pdb|2ORA|A Chain A, Rhodanese (Thiosulfate: Cyanide Sulfurtransferase)
Length = 296
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 629 SDSQAMGRIG---EVISRTWQTAHKMKSQRGSFG---PSAADNDNLRIRRYIAKYTINPA 682
++S G++G V+ +W + ++++ P A+ D R + Y +
Sbjct: 16 AESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLP 75
Query: 683 IANGFSQFVGSVEVGK---------------LADLVLWKPSFFGAKPEMVIKGGAIAWAN 727
GF+ +VGS+ + A V W FG + V+ GG W
Sbjct: 76 SEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLK 135
Query: 728 MGDPNASIPT-PEP 740
G P S P+ PEP
Sbjct: 136 EGHPVTSEPSRPEP 149
>pdb|1RHD|A Chain A, Structure Of Bovine Liver Rhodanese. I. Structure
Determination At 2.5 Angstroms Resolution And A
Comparison Of The Conformation And Sequence Of Its Two
Domains
Length = 293
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 629 SDSQAMGRIG---EVISRTWQTAHKMKSQRGSFG---PSAADNDNLRIRRYIAKYTINPA 682
++S G++G V+ +W + ++++ P A+ D R + Y +
Sbjct: 16 AESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLP 75
Query: 683 IANGFSQFVGSVEVGK---------------LADLVLWKPSFFGAKPEMVIKGGAIAWAN 727
GF+ +VGS+ + A V W FG + V+ GG W
Sbjct: 76 SEAGFADYVGSLGISNDTHVVVYNGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLK 135
Query: 728 MGDPNASIPT-PEP 740
G P S P+ PEP
Sbjct: 136 EGHPVTSEPSRPEP 149
>pdb|1RHS|A Chain A, Sulfur-Substituted Rhodanese
Length = 296
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 629 SDSQAMGRIG---EVISRTWQTAHKMKSQRGSFG---PSAADNDNLRIRRYIAKYTINPA 682
++S G++G V+ +W + ++++ P A+ D R + Y +
Sbjct: 16 AESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLP 75
Query: 683 IANGFSQFVGSVEVGK---------------LADLVLWKPSFFGAKPEMVIKGGAIAWAN 727
GF+ +VGS+ + A V W FG + V+ GG W
Sbjct: 76 SEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLK 135
Query: 728 MGDPNASIPT-PEP 740
G P S P+ PEP
Sbjct: 136 EGHPVTSEPSRPEP 149
>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|B Chain B, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|C Chain C, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
Length = 213
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 484 MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNE 522
M L ED+G T AAI L E ++ +H D +N+
Sbjct: 126 MTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVND 164
>pdb|4EM6|D Chain D, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|A Chain A, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|B Chain B, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|C Chain C, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
Length = 553
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 447 MKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMG 485
+L+ Q TD +PL F KG+ D HE++ A +
Sbjct: 391 FQLLHQGTDTIPLEFIVAAKGHEPTLDHQHEMLMANCLA 429
>pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Xanthomonas Campestris (Target Nysgrc-200456) With Bound
Zn
Length = 472
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 678 TINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKP 714
T+ A A GF +GS+EVGK ADLV S +P
Sbjct: 357 TLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQP 393
>pdb|4F0R|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
Chromobacterium Violaceum (Target Nysgrc-019589) Bound
Zn And 5'- Methylthioadenosine (Unproductive Complex)
pdb|4F0S|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From
Chromobacterium Violaceum (Target Nysgrc-019589) With
Bound Inosine
Length = 447
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 674 IAKYTINPAIANGFSQFVGSVEVGKLADLV 703
I T+N A A G + VGSV+VGK ADL+
Sbjct: 344 IRXATLNGARALGIADKVGSVKVGKQADLI 373
>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPG|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPH|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPH|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPJ|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
pdb|3FPJ|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
Length = 298
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 186 AFGMRLNIAAGTATRFEPG----ESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAAME 241
+GMR+N+ EP K+++ + + G VI G ++DG D AA+
Sbjct: 144 VYGMRVNVV-----EIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA 198
Query: 242 AVKLRQFGN 250
K R F N
Sbjct: 199 EPKRRVFRN 207
>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
pdb|3O31|B Chain B, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
Length = 296
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 186 AFGMRLNIAAGTATRFEPG----ESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAAME 241
+GMR+N+ EP K+++ + + G VI G ++DG D AA+
Sbjct: 143 VYGMRVNVV-----EIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA 197
Query: 242 AVKLRQFGN 250
K R F N
Sbjct: 198 EPKRRVFRN 206
>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPE|B Chain B, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPF|A Chain A, Crystal Structure Of Mtnas In Complex With Mta And Tna
pdb|3FPF|B Chain B, Crystal Structure Of Mtnas In Complex With Mta And Tna
Length = 298
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 186 AFGMRLNIAAGTATRFEPG----ESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAAME 241
+GMR+N+ EP K+++ + + G VI G ++DG D AA+
Sbjct: 144 VYGMRVNVV-----EIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA 198
Query: 242 AVKLRQFGN 250
K R F N
Sbjct: 199 EPKRRVFRN 207
>pdb|2Y2W|A Chain A, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|B Chain B, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|C Chain C, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|D Chain D, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|E Chain E, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|F Chain F, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum
Length = 574
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 439 TCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAA 498
T + A Q + T D+ L+F G S K +E + KA A HE W +P
Sbjct: 316 TVSDAADQAREANNGTKDIALSFDEWGVWYSDKWNEQEDQWKAEAAQGLHHEPWPKSPHL 375
Query: 499 IDNCLTVAE 507
+++ T A+
Sbjct: 376 LEDIYTAAD 384
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,064,174
Number of Sequences: 62578
Number of extensions: 1076991
Number of successful extensions: 2500
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2385
Number of HSP's gapped (non-prelim): 96
length of query: 742
length of database: 14,973,337
effective HSP length: 106
effective length of query: 636
effective length of database: 8,340,069
effective search space: 5304283884
effective search space used: 5304283884
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)