Query 004611
Match_columns 742
No_of_seqs 420 out of 2361
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02303 urease 100.0 3E-220 5E-225 1872.5 69.9 742 1-742 1-742 (837)
2 COG0804 UreC Urea amidohydrola 100.0 9E-143 2E-147 1120.6 34.0 473 268-742 1-473 (568)
3 PRK13985 ureB urease subunit b 100.0 4E-117 8E-122 988.8 43.3 472 270-742 2-473 (568)
4 cd00375 Urease_alpha Urease al 100.0 2E-115 4E-120 978.6 42.6 473 270-742 1-473 (567)
5 PRK13308 ureC urease subunit a 100.0 1E-114 3E-119 972.0 41.5 469 270-742 3-474 (569)
6 PRK13206 ureC urease subunit a 100.0 9E-112 2E-116 953.0 42.6 472 270-742 3-478 (573)
7 TIGR01792 urease_alph urease, 100.0 2E-109 5E-114 937.1 39.3 471 270-742 1-472 (567)
8 PRK13207 ureC urease subunit a 100.0 5E-108 1E-112 924.9 43.9 472 269-742 2-473 (568)
9 PRK13309 ureC urease subunit a 100.0 6E-107 1E-111 918.2 42.4 473 270-742 3-477 (572)
10 PRK13986 urease subunit alpha; 100.0 3E-106 6E-111 790.7 22.4 225 1-250 1-225 (225)
11 PRK13192 bifunctional urease s 100.0 2E-103 4E-108 762.6 20.2 208 1-229 1-208 (208)
12 PRK13203 ureB urease subunit b 100.0 4.1E-56 8.8E-61 388.0 10.5 102 131-232 1-102 (102)
13 PRK13198 ureB urease subunit b 100.0 1.3E-55 2.7E-60 408.8 14.1 121 131-251 29-157 (158)
14 PRK13204 ureB urease subunit b 100.0 9.7E-56 2.1E-60 409.9 13.1 122 131-252 24-152 (159)
15 TIGR00192 urease_beta urease, 100.0 7.6E-56 1.6E-60 385.7 10.5 101 131-231 1-101 (101)
16 COG0832 UreB Urea amidohydrola 100.0 8.4E-56 1.8E-60 381.5 9.2 104 131-234 1-104 (106)
17 cd00407 Urease_beta Urease bet 100.0 1.7E-55 3.6E-60 384.2 10.6 101 131-231 1-101 (101)
18 PF00699 Urease_beta: Urease b 100.0 1E-55 2.2E-60 384.2 8.5 100 132-231 1-100 (100)
19 PRK13202 ureB urease subunit b 100.0 4.9E-55 1.1E-59 381.8 10.5 102 131-232 1-103 (104)
20 PRK13201 ureB urease subunit b 100.0 2.7E-54 5.9E-59 391.7 10.4 105 131-235 1-105 (136)
21 COG0831 UreA Urea amidohydrola 100.0 5E-54 1.1E-58 364.3 8.2 100 1-101 1-100 (100)
22 TIGR00193 urease_gam urease, g 100.0 2E-53 4.3E-58 369.7 9.5 101 1-102 1-101 (102)
23 PRK13205 ureB urease subunit b 100.0 2.5E-53 5.3E-58 392.4 10.5 105 131-235 1-105 (162)
24 PRK13242 ureA urease subunit g 100.0 3E-53 6.5E-58 366.7 9.2 100 1-101 1-100 (100)
25 PRK13241 ureA urease subunit g 100.0 1.1E-52 2.3E-57 364.7 9.5 100 1-101 1-100 (100)
26 PF00547 Urease_gamma: Urease, 100.0 3E-52 6.5E-57 361.9 9.3 99 1-100 1-99 (99)
27 cd00390 Urease_gamma Urease ga 100.0 6.1E-50 1.3E-54 345.6 8.8 96 4-100 1-96 (96)
28 PF00449 Urease_alpha: Urease 100.0 7E-47 1.5E-51 336.3 10.4 121 269-389 1-121 (121)
29 PRK07627 dihydroorotase; Provi 100.0 3.8E-30 8.2E-35 289.0 28.5 356 334-727 1-424 (425)
30 cd01315 L-HYD_ALN L-Hydantoina 100.0 7.8E-30 1.7E-34 288.3 28.6 358 335-728 1-435 (447)
31 PRK06189 allantoinase; Provisi 100.0 9.8E-30 2.1E-34 288.0 27.8 358 333-728 2-434 (451)
32 PLN02942 dihydropyrimidinase 100.0 1.1E-29 2.4E-34 290.0 27.9 357 334-727 5-443 (486)
33 COG0044 PyrC Dihydroorotase an 100.0 8.6E-30 1.9E-34 284.4 24.9 356 334-728 1-423 (430)
34 TIGR03178 allantoinase allanto 100.0 3.9E-29 8.5E-34 282.5 28.8 356 335-728 1-431 (443)
35 TIGR02033 D-hydantoinase D-hyd 100.0 5E-29 1.1E-33 281.9 27.7 358 336-728 1-440 (454)
36 PLN02795 allantoinase 100.0 6.6E-29 1.4E-33 284.4 28.2 360 334-727 44-490 (505)
37 PRK13404 dihydropyrimidinase; 100.0 8.2E-29 1.8E-33 282.1 28.8 358 333-728 3-447 (477)
38 PRK08323 phenylhydantoinase; V 100.0 8.1E-29 1.8E-33 280.8 27.9 355 334-728 1-438 (459)
39 cd01314 D-HYD D-hydantoinases 100.0 1.1E-28 2.4E-33 278.9 28.7 356 336-727 1-437 (447)
40 PRK09357 pyrC dihydroorotase; 100.0 1.2E-28 2.5E-33 276.9 28.4 355 334-727 1-423 (423)
41 PRK09059 dihydroorotase; Valid 100.0 2.6E-28 5.6E-33 274.5 29.3 359 333-726 2-428 (429)
42 cd01297 D-aminoacylase D-amino 100.0 1.5E-28 3.3E-33 275.5 27.4 333 335-728 1-406 (415)
43 PRK08044 allantoinase; Provisi 100.0 2.3E-28 4.9E-33 276.6 28.8 356 334-728 3-436 (449)
44 PRK02382 dihydroorotase; Provi 100.0 2E-27 4.3E-32 268.7 28.6 352 334-728 2-421 (443)
45 PRK09236 dihydroorotase; Revie 100.0 2.5E-27 5.4E-32 267.9 26.6 355 334-728 2-429 (444)
46 PRK07369 dihydroorotase; Provi 100.0 3E-27 6.4E-32 265.0 24.8 337 334-708 2-385 (418)
47 PRK07575 dihydroorotase; Provi 100.0 3.4E-27 7.3E-32 266.4 25.4 350 333-727 2-422 (438)
48 KOG2584 Dihydroorotase and rel 100.0 4.2E-28 9E-33 258.9 16.4 367 335-728 15-456 (522)
49 PRK09060 dihydroorotase; Valid 100.0 6.4E-27 1.4E-31 264.5 26.5 353 333-728 4-425 (444)
50 PRK08417 dihydroorotase; Provi 100.0 4.6E-27 1E-31 261.2 24.7 329 354-726 1-386 (386)
51 PRK06687 chlorohydrolase; Vali 100.0 4.9E-26 1.1E-30 255.4 31.7 335 336-728 2-412 (419)
52 PRK15446 phosphonate metabolis 100.0 3.9E-26 8.6E-31 253.4 30.2 316 333-727 1-382 (383)
53 PRK09045 N-ethylammeline chlor 100.0 4.3E-26 9.4E-31 257.7 30.6 331 333-727 6-416 (443)
54 TIGR00857 pyrC_multi dihydroor 100.0 1.9E-26 4.2E-31 258.2 26.8 341 349-727 3-411 (411)
55 COG1574 Predicted metal-depend 99.9 3.7E-26 8E-31 259.9 28.8 197 494-727 318-534 (535)
56 PRK07228 N-ethylammeline chlor 99.9 1E-25 2.2E-30 254.7 30.9 328 334-728 1-416 (445)
57 cd01298 ATZ_TRZ_like TRZ/ATZ f 99.9 2.7E-25 5.8E-30 247.2 30.8 318 336-727 1-407 (411)
58 PRK08203 hydroxydechloroatrazi 99.9 6.2E-25 1.4E-29 248.8 33.7 333 336-728 4-426 (451)
59 PRK12394 putative metallo-depe 99.9 3.2E-25 7E-30 245.8 29.5 324 333-729 2-378 (379)
60 PRK15493 5-methylthioadenosine 99.9 4.9E-25 1.1E-29 248.6 30.8 336 334-728 1-412 (435)
61 PRK09061 D-glutamate deacylase 99.9 2.2E-25 4.7E-30 255.7 28.0 366 333-728 18-492 (509)
62 PRK08204 hypothetical protein; 99.9 1.5E-24 3.3E-29 245.3 34.2 334 334-728 2-419 (449)
63 COG1228 HutI Imidazolonepropio 99.9 1.9E-25 4.2E-30 248.3 26.1 326 334-728 10-404 (406)
64 PRK06380 metal-dependent hydro 99.9 5.9E-25 1.3E-29 246.5 30.0 326 334-728 1-402 (418)
65 COG1001 AdeC Adenine deaminase 99.9 1.5E-25 3.3E-30 250.6 24.4 337 317-738 10-371 (584)
66 PRK09356 imidazolonepropionase 99.9 8.9E-25 1.9E-29 244.0 29.4 330 333-726 2-406 (406)
67 PRK01211 dihydroorotase; Provi 99.9 2.2E-25 4.7E-30 248.9 23.3 334 337-727 2-391 (409)
68 TIGR02318 phosphono_phnM phosp 99.9 5.1E-25 1.1E-29 243.8 26.0 331 337-725 1-376 (376)
69 PRK12393 amidohydrolase; Provi 99.9 9.1E-24 2E-28 239.8 34.5 330 333-727 1-430 (457)
70 PRK06151 N-ethylammeline chlor 99.9 3.1E-24 6.6E-29 245.5 29.9 331 335-728 2-440 (488)
71 PRK08393 N-ethylammeline chlor 99.9 1.3E-23 2.8E-28 236.4 31.8 321 334-727 1-401 (424)
72 PRK07213 chlorohydrolase; Prov 99.9 1.5E-23 3.2E-28 232.3 31.3 312 336-723 2-375 (375)
73 TIGR01178 ade adenine deaminas 99.9 1.4E-23 3E-28 241.9 31.5 310 335-727 1-333 (552)
74 PRK07203 putative chlorohydrol 99.9 6.1E-24 1.3E-28 240.2 27.9 328 336-728 2-417 (442)
75 cd01293 Bact_CD Bacterial cyto 99.9 7.6E-24 1.6E-28 234.4 27.6 331 337-724 1-398 (398)
76 PRK06038 N-ethylammeline chlor 99.9 2.1E-23 4.5E-28 235.1 29.2 324 334-727 2-402 (430)
77 TIGR00221 nagA N-acetylglucosa 99.9 1E-23 2.2E-28 233.3 25.0 333 334-722 3-380 (380)
78 PRK09228 guanine deaminase; Pr 99.9 2.9E-23 6.3E-28 234.1 29.0 319 349-727 29-432 (433)
79 PRK11170 nagA N-acetylglucosam 99.9 1.5E-23 3.3E-28 232.3 26.0 334 336-727 2-382 (382)
80 PRK04250 dihydroorotase; Provi 99.9 1.5E-23 3.1E-28 233.9 25.6 336 340-727 3-386 (398)
81 PRK09237 dihydroorotase; Provi 99.9 3.6E-23 7.8E-28 229.4 28.2 322 336-730 1-373 (380)
82 PRK05985 cytosine deaminase; P 99.9 7.2E-23 1.6E-27 227.8 29.0 330 334-727 2-390 (391)
83 PRK00369 pyrC dihydroorotase; 99.9 1.6E-23 3.6E-28 232.6 22.4 319 352-727 14-374 (392)
84 PRK10657 isoaspartyl dipeptida 99.9 1.7E-22 3.6E-27 224.4 29.0 333 334-728 1-379 (388)
85 TIGR01975 isoAsp_dipep isoaspa 99.9 6.3E-23 1.4E-27 227.7 24.7 331 336-727 2-379 (389)
86 COG1820 NagA N-acetylglucosami 99.9 7.4E-23 1.6E-27 221.0 23.5 335 336-726 2-380 (380)
87 TIGR01224 hutI imidazoloneprop 99.9 1.2E-22 2.6E-27 224.6 25.1 310 349-723 1-377 (377)
88 cd01303 GDEase Guanine deamina 99.9 3.5E-22 7.7E-27 225.1 29.1 305 349-710 24-393 (429)
89 PRK08418 chlorohydrolase; Prov 99.9 2.4E-22 5.3E-27 224.9 27.3 320 336-724 2-407 (408)
90 PRK07572 cytosine deaminase; V 99.9 4.4E-22 9.6E-27 224.1 29.4 344 334-737 2-414 (426)
91 TIGR02967 guan_deamin guanine 99.9 3.7E-22 8.1E-27 222.7 28.4 298 350-710 5-365 (401)
92 PRK07583 cytosine deaminase-li 99.9 3.7E-22 8E-27 225.5 27.9 344 334-727 11-424 (438)
93 TIGR03314 Se_ssnA putative sel 99.9 3E-22 6.5E-27 226.4 26.2 330 336-728 1-416 (441)
94 PRK14085 imidazolonepropionase 99.9 1.5E-21 3.2E-26 216.8 29.7 299 334-709 1-364 (382)
95 cd01299 Met_dep_hydrolase_A Me 99.9 2.1E-22 4.6E-27 219.5 22.1 276 386-710 1-336 (342)
96 PRK09230 cytosine deaminase; P 99.9 3.3E-21 7.2E-26 216.9 31.9 344 334-727 4-407 (426)
97 cd01296 Imidazolone-5PH Imidaz 99.9 9.7E-22 2.1E-26 216.7 25.4 306 354-721 1-371 (371)
98 cd01313 Met_dep_hydrolase_E Me 99.9 9.6E-22 2.1E-26 220.8 25.7 304 345-709 3-386 (418)
99 cd00854 NagA N-acetylglucosami 99.9 9.5E-22 2.1E-26 217.8 24.5 326 336-721 1-374 (374)
100 PRK10027 cryptic adenine deami 99.9 3.4E-21 7.4E-26 222.6 30.0 324 318-727 17-367 (588)
101 TIGR02022 hutF formiminoglutam 99.9 1.4E-21 3.1E-26 221.8 25.9 200 485-728 204-434 (455)
102 PRK09229 N-formimino-L-glutama 99.9 2.2E-21 4.7E-26 220.3 27.3 329 335-728 4-434 (456)
103 cd01302 Cyclic_amidohydrolases 99.9 5E-22 1.1E-26 217.1 18.7 284 394-709 1-307 (337)
104 COG0402 SsnA Cytosine deaminas 99.9 1.2E-20 2.6E-25 212.2 30.3 329 335-728 3-411 (421)
105 TIGR03583 EF_0837 probable ami 99.9 1.8E-20 3.9E-25 206.8 27.5 313 334-724 1-364 (365)
106 PRK06846 putative deaminase; V 99.9 1.5E-20 3.3E-25 210.6 26.0 332 336-727 6-406 (410)
107 cd01308 Isoaspartyl-dipeptidas 99.9 5.3E-20 1.2E-24 204.4 30.0 333 336-728 2-378 (387)
108 cd01312 Met_dep_hydrolase_D Me 99.9 2.7E-20 5.8E-25 206.7 26.8 296 359-722 1-381 (381)
109 cd01309 Met_dep_hydrolase_C Me 99.9 7.1E-21 1.5E-25 209.8 21.8 301 358-725 1-359 (359)
110 cd01317 DHOase_IIa Dihydroorot 99.9 9.2E-21 2E-25 209.9 20.3 298 386-709 2-344 (374)
111 cd01318 DHOase_IIb Dihydroorot 99.9 4.4E-21 9.4E-26 211.5 16.4 284 393-709 1-327 (361)
112 TIGR03121 one_C_dehyd_A formyl 99.9 4E-19 8.6E-24 201.9 30.4 361 336-728 2-501 (556)
113 cd01304 FMDH_A Formylmethanofu 99.8 1.7E-18 3.6E-23 196.0 31.2 364 338-727 1-498 (541)
114 cd01307 Met_dep_hydrolase_B Me 99.8 2.5E-19 5.5E-24 195.8 22.6 283 353-708 1-316 (338)
115 COG3964 Predicted amidohydrola 99.8 1.3E-19 2.8E-24 186.9 18.2 299 333-708 3-339 (386)
116 cd01295 AdeC Adenine deaminase 99.8 5.6E-19 1.2E-23 198.8 22.2 273 390-729 1-294 (422)
117 cd01300 YtcJ_like YtcJ_like me 99.8 2.3E-18 4.9E-23 196.7 26.4 179 494-704 292-479 (479)
118 KOG3968 Atrazine chlorohydrola 99.8 6.9E-18 1.5E-22 181.9 23.4 109 609-726 308-438 (439)
119 COG3454 Metal-dependent hydrol 99.8 2.5E-18 5.5E-23 179.3 16.8 310 336-725 1-377 (377)
120 COG3653 N-acyl-D-aspartate/D-g 99.8 2.6E-17 5.7E-22 176.4 21.9 87 333-430 5-97 (579)
121 cd01316 CAD_DHOase The eukaryo 99.7 1.5E-16 3.3E-21 174.2 18.1 295 394-728 2-335 (344)
122 COG1229 FwdA Formylmethanofura 99.7 3.8E-15 8.3E-20 158.9 21.1 103 622-727 383-511 (575)
123 KOG3892 N-acetyl-glucosamine-6 99.6 6.2E-15 1.4E-19 150.2 16.5 335 336-727 14-405 (407)
124 cd01294 DHOase Dihydroorotase 99.6 1.2E-14 2.7E-19 158.7 17.2 268 397-698 3-308 (335)
125 PF01979 Amidohydro_1: Amidohy 99.5 1.8E-14 3.9E-19 155.3 9.8 40 667-706 294-333 (333)
126 cd01306 PhnM PhnM is believed 99.5 4.6E-13 1E-17 145.3 18.3 165 495-721 161-325 (325)
127 PF07969 Amidohydro_3: Amidohy 99.5 1.7E-13 3.6E-18 152.7 14.8 184 487-704 215-404 (404)
128 PF13147 Amidohydro_4: Amidohy 99.4 8.6E-13 1.9E-17 137.9 12.0 79 612-703 226-304 (304)
129 PRK05451 dihydroorotase; Provi 99.4 2.3E-11 5E-16 133.7 19.5 267 395-697 5-313 (345)
130 TIGR00856 pyrC_dimer dihydroor 99.2 2.4E-10 5.2E-15 125.5 16.4 268 395-706 2-311 (341)
131 cd01305 archeal_chlorohydrolas 99.2 2.3E-10 5E-15 120.8 15.2 228 395-684 1-263 (263)
132 cd01292 metallo-dependent_hydr 99.1 1.1E-09 2.4E-14 113.2 16.8 194 444-684 65-275 (275)
133 PF13594 Amidohydro_5: Amidohy 99.1 8.8E-11 1.9E-15 98.6 3.8 59 354-423 1-67 (68)
134 PLN02599 dihydroorotase 99.1 2E-09 4.4E-14 118.9 15.5 263 395-694 23-329 (364)
135 PRK06886 hypothetical protein; 98.6 2.2E-06 4.7E-11 93.8 19.3 158 492-688 157-328 (329)
136 TIGR01430 aden_deam adenosine 97.9 0.00077 1.7E-08 73.6 19.0 156 483-689 157-314 (324)
137 cd01310 TatD_DNAse TatD like p 97.7 0.001 2.2E-08 69.1 16.0 62 496-564 107-169 (251)
138 TIGR00010 hydrolase, TatD fami 97.6 0.0017 3.7E-08 67.5 16.0 146 400-564 1-169 (252)
139 cd01320 ADA Adenosine deaminas 97.5 0.0042 9.1E-08 67.7 18.5 155 483-688 158-314 (325)
140 PRK10812 putative DNAse; Provi 97.3 0.0032 6.9E-08 67.1 13.9 221 400-688 3-257 (265)
141 PRK11449 putative deoxyribonuc 97.2 0.011 2.3E-07 62.9 16.1 149 397-564 2-175 (258)
142 PRK10425 DNase TatD; Provision 97.2 0.012 2.7E-07 62.4 16.1 153 400-564 1-170 (258)
143 COG0084 TatD Mg-dependent DNas 97.1 0.0097 2.1E-07 63.0 14.8 146 400-564 3-173 (256)
144 PRK09358 adenosine deaminase; 97.0 0.03 6.5E-07 61.6 17.5 156 482-688 166-323 (340)
145 COG1099 Predicted metal-depend 96.6 0.019 4.2E-07 58.7 10.8 121 400-523 2-140 (254)
146 PF01026 TatD_DNase: TatD rela 96.1 0.027 5.7E-07 59.5 9.5 145 401-564 1-173 (255)
147 cd00530 PTE Phosphotriesterase 96.0 0.14 3.1E-06 54.7 14.8 67 497-566 136-205 (293)
148 PF12890 DHOase: Dihydro-orota 93.9 0.04 8.8E-07 52.1 2.7 27 393-419 1-28 (142)
149 COG0418 PyrC Dihydroorotase [N 93.8 3.6 7.8E-05 44.4 17.1 148 396-546 6-179 (344)
150 cd01311 PDC_hydrolase 2-pyrone 92.0 1.6 3.5E-05 46.2 11.8 72 471-544 82-155 (263)
151 PRK09875 putative hydrolase; P 91.7 5.6 0.00012 43.2 15.6 148 497-686 139-292 (292)
152 cd00443 ADA_AMPD Adenosine/AMP 91.7 3.5 7.6E-05 44.8 14.2 120 482-635 135-258 (305)
153 KOG2902 Dihydroorotase [Nucleo 89.6 1.6 3.4E-05 45.6 8.4 155 396-560 6-189 (344)
154 cd01321 ADGF Adenosine deamina 88.7 5.3 0.00011 44.4 12.7 118 483-634 163-289 (345)
155 PTZ00124 adenosine deaminase; 84.6 18 0.00039 40.5 14.1 153 483-687 193-349 (362)
156 PF00962 A_deaminase: Adenosin 81.6 3.6 7.8E-05 44.9 7.0 77 482-563 164-242 (331)
157 TIGR03096 nitroso_cyanin nitro 80.0 5.6 0.00012 38.2 6.7 56 133-213 53-108 (135)
158 COG1831 Predicted metal-depend 76.9 14 0.00029 39.5 9.0 140 493-688 141-283 (285)
159 COG1816 Add Adenosine deaminas 75.0 31 0.00067 38.4 11.7 109 494-635 182-290 (345)
160 PF06651 DUF1163: Protein of u 74.2 1.7 3.7E-05 36.2 1.3 16 196-211 44-59 (70)
161 PF04744 Monooxygenase_B: Mono 74.2 4.3 9.3E-05 44.9 4.7 69 151-225 266-345 (381)
162 TIGR03079 CH4_NH3mon_ox_B meth 73.7 4.4 9.5E-05 44.7 4.6 63 147-212 280-351 (399)
163 KOG1097 Adenine deaminase/aden 70.0 54 0.0012 37.1 12.1 120 481-634 209-332 (399)
164 PF10633 NPCBM_assoc: NPCBM-as 68.3 6.8 0.00015 33.4 3.8 42 151-212 8-57 (78)
165 PRK15233 putative fimbrial cha 66.3 21 0.00045 37.9 7.6 70 134-215 40-110 (246)
166 PF04314 DUF461: Protein of un 64.5 13 0.00028 34.2 5.1 59 150-212 16-83 (110)
167 PF13473 Cupredoxin_1: Cupredo 63.7 17 0.00037 32.8 5.7 26 137-163 31-56 (104)
168 COG2159 Predicted metal-depend 63.0 2.3E+02 0.0049 30.7 18.1 72 472-543 115-200 (293)
169 TIGR01431 adm_rel adenosine de 62.5 1.1E+02 0.0023 35.8 13.2 118 483-634 290-415 (479)
170 PF00345 PapD_N: Pili and flag 55.8 16 0.00035 33.8 4.2 71 136-213 2-72 (122)
171 COG4025 Predicted membrane pro 54.2 28 0.0006 36.4 5.8 49 89-166 224-277 (284)
172 PRK09918 putative fimbrial cha 51.3 46 0.001 34.8 7.2 71 133-214 23-93 (230)
173 PRK09926 putative chaperone pr 48.4 50 0.0011 34.9 6.9 74 134-215 25-100 (246)
174 PF09874 DUF2101: Predicted me 48.4 34 0.00075 34.9 5.4 49 89-166 154-205 (206)
175 PF07100 ASRT: Anabaena sensor 46.9 13 0.00028 34.8 1.9 38 153-198 30-67 (121)
176 PLN03080 Probable beta-xylosid 46.9 27 0.00059 43.1 5.4 51 150-211 686-740 (779)
177 PRK06361 hypothetical protein; 46.5 31 0.00068 35.1 5.0 58 614-687 153-210 (212)
178 PF14016 DUF4232: Protein of u 45.9 54 0.0012 30.9 6.2 60 146-214 16-81 (131)
179 PRK15211 fimbrial chaperone pr 44.5 77 0.0017 33.2 7.5 72 134-215 22-93 (229)
180 COG4288 Uncharacterized protei 40.7 25 0.00055 32.2 2.8 39 152-198 31-69 (124)
181 PRK15295 fimbrial assembly cha 39.9 89 0.0019 32.6 7.2 74 133-215 18-91 (226)
182 PRK15192 fimbrial chaperone Bc 38.3 1.1E+02 0.0023 32.3 7.4 75 134-216 22-100 (234)
183 PF07385 DUF1498: Protein of u 37.5 33 0.00071 35.6 3.4 51 141-209 109-166 (225)
184 PF06280 DUF1034: Fn3-like dom 37.5 40 0.00086 30.8 3.7 57 150-212 10-77 (112)
185 PF11611 DUF4352: Domain of un 37.5 86 0.0019 28.5 6.0 59 151-212 39-98 (123)
186 PRK15308 putative fimbrial pro 37.2 1.1E+02 0.0024 32.2 7.4 79 133-216 15-101 (234)
187 PF06030 DUF916: Bacterial pro 36.4 1E+02 0.0022 29.0 6.3 68 143-212 21-100 (121)
188 PF07732 Cu-oxidase_3: Multico 35.0 71 0.0015 29.7 5.0 59 143-213 28-86 (117)
189 COG3618 Predicted metal-depend 33.2 4.4E+02 0.0096 28.6 11.1 22 497-518 124-145 (279)
190 TIGR02656 cyanin_plasto plasto 31.7 1.2E+02 0.0027 27.0 5.8 70 134-217 10-79 (99)
191 COG3121 FimC P pilus assembly 30.9 1.4E+02 0.0031 31.3 7.0 73 133-216 26-100 (235)
192 PRK11385 putativi pili assembl 30.5 2.1E+02 0.0046 30.1 8.2 78 134-215 26-103 (236)
193 PF07908 D-aminoacyl_C: D-amin 30.2 57 0.0012 25.5 2.9 23 706-728 12-34 (48)
194 PF07610 DUF1573: Protein of u 29.7 38 0.00083 26.0 1.9 15 154-168 2-16 (45)
195 PF04909 Amidohydro_2: Amidohy 28.6 51 0.0011 34.0 3.2 74 472-545 87-174 (273)
196 PRK00912 ribonuclease P protei 27.3 1.9E+02 0.0041 30.0 7.3 68 614-697 159-227 (237)
197 PRK15249 fimbrial chaperone pr 27.2 69 0.0015 34.0 3.9 77 133-215 27-104 (253)
198 PRK15254 fimbrial chaperone pr 27.2 2.2E+02 0.0048 30.0 7.6 72 133-215 15-87 (239)
199 PRK15299 fimbrial chaperone pr 26.7 80 0.0017 32.9 4.2 73 134-215 22-95 (227)
200 PF03746 LamB_YcsF: LamB/YcsF 26.7 38 0.00083 35.8 1.8 33 1-33 75-107 (242)
201 PF12340 DUF3638: Protein of u 26.4 96 0.0021 32.6 4.7 76 17-93 122-199 (229)
202 smart00237 Calx_beta Domains i 26.1 3.3E+02 0.0072 23.8 7.5 65 133-208 1-67 (90)
203 COG1242 Predicted Fe-S oxidore 25.1 5.3E+02 0.011 28.1 9.8 51 495-545 166-224 (312)
204 PF04442 CtaG_Cox11: Cytochrom 25.1 2.4E+02 0.0051 27.8 6.8 75 132-213 50-125 (152)
205 PRK02710 plastocyanin; Provisi 24.5 2.1E+02 0.0046 26.5 6.3 57 134-213 40-96 (119)
206 PRK15224 pili assembly chapero 24.2 2.4E+02 0.0052 29.8 7.2 72 133-215 27-98 (237)
207 PF08428 Rib: Rib/alpha-like r 24.2 45 0.00097 27.8 1.5 14 79-92 41-54 (65)
208 COG3132 Uncharacterized protei 24.1 1E+02 0.0022 30.9 4.1 66 1-71 48-129 (215)
209 PRK15098 beta-D-glucoside gluc 24.1 1E+02 0.0022 38.1 5.1 53 148-211 667-723 (765)
210 PRK15208 long polar fimbrial c 23.5 2.6E+02 0.0057 29.1 7.4 70 134-215 21-92 (228)
211 PF14874 PapD-like: Flagellar- 22.9 1.8E+02 0.0039 25.6 5.3 65 133-214 8-72 (102)
212 PF15016 DUF4520: Domain of un 22.4 63 0.0014 28.6 2.1 29 71-99 39-68 (85)
213 PF09890 DUF2117: Uncharacteri 22.3 1.6E+02 0.0034 30.6 5.2 81 309-405 84-164 (215)
214 PF07705 CARDB: CARDB; InterP 21.9 93 0.002 26.9 3.2 49 150-214 21-70 (101)
215 PF12044 Metallopep: Putative 21.4 55 0.0012 37.4 1.9 31 85-115 242-272 (423)
216 PRK15188 fimbrial chaperone pr 21.1 3.3E+02 0.0072 28.5 7.5 71 134-215 27-98 (228)
217 PRK15195 fimbrial chaperone pr 20.8 2.9E+02 0.0062 28.9 7.0 71 134-215 25-96 (229)
218 COG1735 Php Predicted metal-de 20.6 1.2E+03 0.025 25.8 16.8 25 664-688 291-315 (316)
219 PF09862 DUF2089: Protein of u 20.6 1.8E+02 0.0039 27.2 4.8 60 1-60 32-111 (113)
220 PF12690 BsuPI: Intracellular 20.3 89 0.0019 27.3 2.6 55 151-210 3-65 (82)
No 1
>PLN02303 urease
Probab=100.00 E-value=2.5e-220 Score=1872.49 Aligned_cols=742 Identities=83% Similarity=1.292 Sum_probs=715.0
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHccccccCCCcCCChhhcccc
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~~~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|||||||+|||+||+||+|||||++||||||||||+||||++|||+||||++||+|||++|+++|++||||||||+||++
T Consensus 1 m~l~p~e~~kl~~~~a~~la~~r~~rg~~ln~pea~ali~~~~~e~ar~g~~~v~~lm~~g~~~l~~~~v~~gv~~~~~~ 80 (837)
T PLN02303 1 MKLSPREIDKLLLHQAGFLAQKRLARGLRLNYTEAVALIATQILEFIRDGDKSVAELMDLGKQLLGRRQVLPAVPHLLHT 80 (837)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhhhCCHhhcccChHhhhce
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred eeeeeecCCCceeEEeecCccCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCeeEeCCCceeeCCCCceEEEEEEeCC
Q 004611 81 VQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPVPAMDKFPGIEDNNVPGRIIPGGGSITLNHGRKAVILKVVNTG 160 (742)
Q Consensus 81 ~~ve~~f~~g~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~ 160 (742)
||||+||||||||||||+||++++|+|++||||||||+|+.+.||.....|+||||++++++|+||+||++++|+|+|+|
T Consensus 81 vqve~tf~dgtklvtvh~pi~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~pg~~~~~~~~i~~n~gr~~~~l~v~n~g 160 (837)
T PLN02303 81 VQVEGTFPDGTKLVTVHDPISSEDGNLELALHGSFLPVPSLDKFPEDEEEPIPGEIITGDGSIIINAGRKAVKLKVTNTG 160 (837)
T ss_pred eeEEEEcCCCCEEEEecCCCCCCCCCHhHhhcCCcCCCCchhhccccccCCCCceEecCCCCeeeCCCCCeEEEEEeeCC
Confidence 99999999999999999999999999999999999999999999987777999999999999999999999999999999
Q ss_pred CcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEEEecCceEEeccCCccCCCCCcccHHHHH
Q 004611 161 DRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAAM 240 (742)
Q Consensus 161 dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 240 (742)
||||||||||||||||+||+|||++|||||||||||||||||||++|+|+||+|||.|+|+|||||++|+++..++++++
T Consensus 161 drpiqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv~~~G~r~v~G~~~~~~g~~~~~~~~~~~ 240 (837)
T PLN02303 161 DRPIQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLVSIGGNKVIRGGNGIVDGPVDDSRLTKIM 240 (837)
T ss_pred CCceEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEEEccCceEEeccCcccCCcCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHhcCCCCCcccccccccCCCCCcccccCHHHHHhhhCCCCCCcccccCcccEEEEeccccccccccccCCCccccc
Q 004611 241 EAVKLRQFGNQEEANTSVGVAGEDRYLTTVISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIRE 320 (742)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~e~~~g~gk~~r~ 320 (742)
+|++++||.|.++..........++..+++|||++||+|||||+||+|||+||+||+|||||||.|||||+|||||++||
T Consensus 241 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~r~~y~~~~gpt~gd~vrl~dt~l~~~ve~d~~~~g~e~~fgggk~~r~ 320 (837)
T PLN02303 241 ERVSSRGFGHVEEDDASEGVIGEDPDFTTTISREKYANMYGPTTGDKIRLGDTNLYAEIEKDFTVYGDECKFGGGKVLRD 320 (837)
T ss_pred HHHHhcCCCCCCCcCCccccccccccCccccChhhhhhhcCCCCCceeeecccceEEEEeecccccCceeeecCCceecc
Confidence 99999999999874222222222333577899999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCcccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecc
Q 004611 321 GMGQACGHHYAKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGA 400 (742)
Q Consensus 321 ~~~~~~~~~~~~~~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGf 400 (742)
||+|+.+.+.++.+|++|+|++|+|.++++++||+|+||||++||+.++++.|++|++++++++++++||++|++|+|||
T Consensus 321 gm~~~~~~~~~~~~DlVItNa~IID~~Gi~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ 400 (837)
T PLN02303 321 GMGQATGYGAADSLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGG 400 (837)
T ss_pred CCCcCCCCCCcCcCCEEEeCeEEECCCCcEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCE
Confidence 99999888777789999999999998889999999999999999998888888999999999999999999999999999
Q ss_pred eeeccCCCCchHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCCCChHHHHHHHH
Q 004611 401 IDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIK 480 (742)
Q Consensus 401 ID~HvH~~~P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~ 480 (742)
||+|+|+.+|++..+++++|+||+++||+++++++++++++++++.++.++++.+..+++++++++++.++.+.+.++++
T Consensus 401 ID~HVHf~~Pg~~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~~~pvn~Gf~gkG~~s~l~eL~elie 480 (837)
T PLN02303 401 IDCHVHFICPQLATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTDDLPLNFGFTGKGNTAKPEGLHEIIK 480 (837)
T ss_pred EEeecCCCCCcHHHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcccCCCcEEEEccCcccCHHHHHHHHH
Confidence 99999999999999999999999999999998888888899999999999999999999999999887777889999999
Q ss_pred hcCceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhh
Q 004611 481 AGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGV 560 (742)
Q Consensus 481 aGa~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~ 560 (742)
+|+.++|.|.+|+.+++.+.+++++|+++|+++++|+++++|+|+++.++++++++++|++|.++++|||+||+|+.|++
T Consensus 481 aGa~GfK~h~d~gvTpelL~raLe~AkelGVpVaIHAEdLnE~G~vE~t~~a~G~RpIh~~h~~Ga~gghapdi~~~~~~ 560 (837)
T PLN02303 481 AGAMGLKLHEDWGTTPAAIDNCLDVAEEYDIQVTIHTDTLNESGCVEHSIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGV 560 (837)
T ss_pred cCcEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEecCcccccchHHHHHHHHCCChHHHHHhcCCCCCCCcHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchh
Q 004611 561 KNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEV 640 (742)
Q Consensus 561 ~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~ 640 (742)
+|+||||||||+|||.||++||+||+|+|||+++++++|++|+++|||.+++++++.|||+|++++++||+|+|||+||+
T Consensus 561 ~nvlpsstnpt~p~t~nt~~e~~dm~m~~h~l~~~~~edvafa~srir~~tiaaed~l~d~G~~s~~~SDs~amgr~ge~ 640 (837)
T PLN02303 561 KNVLPSSTNPTRPYTKNTIDEHLDMLMVCHHLDKNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEV 640 (837)
T ss_pred CCccCCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccchhhccchhhhccCCEEEEeccchhhCcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEEC
Q 004611 641 ISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKG 720 (742)
Q Consensus 641 i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~ 720 (742)
+.|+||.+++|+.+++.|+.+...++|+++++||+++|+|||+++|+++++|||++||.||||||++++|+.+|.+||++
T Consensus 641 i~r~~q~A~k~~~~~g~l~~~~~~~dn~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~fg~~~~~vi~~ 720 (837)
T PLN02303 641 ITRTWQTAHKMKSQRGALEPRGADNDNFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAFFGAKPEMVIKG 720 (837)
T ss_pred eeehHHHHHHHHHhcCCCCCccccccccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccccCCCeeEEEEC
Confidence 99999999999999999987766689999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeccCCCCCCCCCCCCCCC
Q 004611 721 GAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 721 G~iV~~~~g~~~~~~~~~~p~~ 742 (742)
|+++|+.|||+|||||||||++
T Consensus 721 G~ivy~~~gd~nasipt~qp~~ 742 (837)
T PLN02303 721 GQIAWAQMGDPNASIPTPEPVI 742 (837)
T ss_pred CEEEEccCCCccccCCCCCCcc
Confidence 9999999999999999999985
No 2
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-143 Score=1120.64 Aligned_cols=473 Identities=73% Similarity=1.167 Sum_probs=467.9
Q ss_pred ccccCHHHHHhhhCCCCCCcccccCcccEEEEeccccccccccccCCCccccccccccCCCCCCCcccEEEEecEEEcCC
Q 004611 268 TTVISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHT 347 (742)
Q Consensus 268 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~e~~~g~gk~~r~~~~~~~~~~~~~~~dlVI~Na~Iid~~ 347 (742)
+++|||++|++|||||+||+|||+||+||+|||||||+||||++|||||++||||||++..+..+.+|+||+|+.|+|++
T Consensus 1 ~~~isR~~Ya~lyGPT~GDkvRL~DT~L~ievEkD~t~yGeE~~fGGGKviRdGMgqs~~~~~~~~~D~VITNa~IiD~~ 80 (568)
T COG0804 1 MFKISRQQYADLYGPTTGDKVRLADTNLFIEVEKDLTTYGEEVKFGGGKVIRDGMGQSQRLTRAGALDLVITNALIIDYW 80 (568)
T ss_pred CcccCHHHHHHhhCCCcCCeeeecCceeEEEEehhhhcccceeeecCceeeccccCcCccccccCcccEEEeeeEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999887788999999999999999
Q ss_pred CceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchHHHHHHHHHHHHHHhC
Q 004611 348 GIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGG 427 (742)
Q Consensus 348 gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~~~~al~~GvTTl~~g 427 (742)
|++|+||+|+||||++|||++||++||+|+ +++++++++|.++|+|++.|.||+|+||++|||..++|.+|+||+++|
T Consensus 81 Gi~KADiGikdGrI~~IGKaGNPd~~dgV~--iiiG~sTe~iagEg~I~TAGGiDtHiHfI~Pqqi~~Al~sGiTtmiGG 158 (568)
T COG0804 81 GIVKADIGIKDGRIAGIGKAGNPDIMDGVT--IIIGPSTEIIAGEGKIVTAGGIDTHIHFICPQQIEEALASGITTMIGG 158 (568)
T ss_pred ceEEeecccccceEEEeecCCCCCccCCce--EEeccccceecCCceEEeeccccceeEEecHHHHHHHHhcCcEEEecC
Confidence 999999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHH
Q 004611 428 GTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAE 507 (742)
Q Consensus 428 Gtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~ 507 (742)
|+||++++++++|++++|++++|+++.+.+|+|+||.+|++.+.+..|.||+++|++|+|+|+||++||+.|+.|+++|+
T Consensus 159 GtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~N~g~lgKGn~s~~~~L~Eqi~aGa~GlKlHEDWG~TpaaI~~~L~VAD 238 (568)
T COG0804 159 GTGPADGTNATTCTPGPWHIARMLQAADGLPMNIGFLGKGNASNPAPLAEQIEAGAIGLKLHEDWGATPAAIDTCLSVAD 238 (568)
T ss_pred ccCCCCCcccccccCCHHHHHHHHHhhhcCceeeEEeecCCCCCchhHHHHHhhccceeEeecccCCCHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEE
Q 004611 508 EYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLM 587 (742)
Q Consensus 508 e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~ 587 (742)
++++||.+|+|++||+||+|+++++++||++|+||++++||||+||+|+.|..+|+||||||||+|||+|+++||+||+|
T Consensus 239 ~~DvqVaiHtDTLNEsGfvEdTi~A~~gRtIHtyHtEGAGGGHAPDiikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlM 318 (568)
T COG0804 239 EYDVQVAIHTDTLNESGFVEDTIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLM 318 (568)
T ss_pred hhceEEEEeecccccccchHhHHHHhcCceeEEeeccCCCCCCccHHHHHccCCCcCcCCCCCCCCcccccHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCC
Q 004611 588 VCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDN 667 (742)
Q Consensus 588 v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~g 667 (742)
+|||+++.++||++|+++|||.+++++++.|||+|++++++||||+|||+||++.|+||++++||.+|++|..+...++|
T Consensus 319 VcHhL~p~ipeDvaFAeSRIR~eTIAAEdiLhDmGafSmisSDSQAMGRvGEvi~RtwQtA~kmK~qrG~L~~d~~~nDN 398 (568)
T COG0804 319 VCHHLDPRIPEDVAFAESRIRPETIAAEDILHDMGAFSMISSDSQAMGRVGEVITRTWQTADKMKKQRGALPEDAGGNDN 398 (568)
T ss_pred hhccCCCCCcchhhhhhhccchhhhhHHHHHhhccceEEeccchHhhhccchhhhhHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEeccCCCCCCCCCCCCCCC
Q 004611 668 LRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 668 l~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~g~~~~~~~~~~p~~ 742 (742)
+++++|+++||+|||.++|+++++||+|+||+||||||+|.+|+.+|++|+|+|.|+|++|||+|+||||||||.
T Consensus 399 ~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~PaFFGvKP~~vlkgG~ia~a~mGD~NaSIPTpqPv~ 473 (568)
T COG0804 399 FRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPAFFGVKPELVLKGGMIAWAQMGDPNASIPTPQPVH 473 (568)
T ss_pred HHHhhhhhheecCHHHhcccchhccceeccceeeeeeechhhcCCCcceEEecceeeeeccCCCCCCCCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>PRK13985 ureB urease subunit beta; Provisional
Probab=100.00 E-value=3.7e-117 Score=988.78 Aligned_cols=472 Identities=63% Similarity=1.049 Sum_probs=458.8
Q ss_pred ccCHHHHHhhhCCCCCCcccccCcccEEEEeccccccccccccCCCccccccccccCCCCCCCcccEEEEecEEEcCCCc
Q 004611 270 VISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHTGI 349 (742)
Q Consensus 270 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~e~~~g~gk~~r~~~~~~~~~~~~~~~dlVI~Na~Iid~~gi 349 (742)
+|||++|+++||||+||||||+||+||+|||||||.|||||+|||||++||||+|+...+ ++.+|+||+|++|+|++++
T Consensus 2 ~~~r~~y~~~~gpt~gd~~rl~dt~l~~~~e~d~~~~g~e~~~g~gk~~r~g~~~~~~~~-~~~~DlVI~Na~IiD~~gi 80 (568)
T PRK13985 2 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPS-KEELDLIITNALIIDYTGI 80 (568)
T ss_pred ccChHHhhhhhCCCCCceeeecccceEEEEeecccccCceeeecCCceeccCCCCCCCCC-CCcCCEEEECeEEECCCCc
Confidence 699999999999999999999999999999999999999999999999999999987754 4478999999999998888
Q ss_pred eeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchHHHHHHHHHHHHHHhCCC
Q 004611 350 FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGT 429 (742)
Q Consensus 350 ~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~~~~al~~GvTTl~~gGt 429 (742)
.+++|+|+||||++|++.+|++.|++|+++++++.++++||++|++|+|||||+|+|+.+|++...++..|+||++.+|+
T Consensus 81 ~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P~~~~~AlagGVTTvI~~G~ 160 (568)
T PRK13985 81 YKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGT 160 (568)
T ss_pred EEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCccHHHHHhcCceEEEEccCc
Confidence 89999999999999999989889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHHc
Q 004611 430 GPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEY 509 (742)
Q Consensus 430 gp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e~ 509 (742)
+|.+++++++++++.|+++.+++..+..+++++++++++.+..+.+.+++++|+.|+|+|++|+.++..+++++++|+++
T Consensus 161 gP~~~T~p~~~tpg~~~i~~ml~~a~~~pvn~gf~gkG~~~~l~eL~el~~aGA~GfK~~ed~g~t~~~I~~aL~vA~~~ 240 (568)
T PRK13985 161 GPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLGKGNSSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 240 (568)
T ss_pred CCCCCCCCcCCCCcHHHHHHHHHHhhccCccEEEecCCccCCHHHHHHHHHcCCEEEEECCccCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999988777788999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEe
Q 004611 510 DIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVC 589 (742)
Q Consensus 510 g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~ 589 (742)
|+++.+|++++||.||+|.+++++.|+++|+||++++++||+||+|+.++++|+||||||||+|||.|+++||+||+|+|
T Consensus 241 dv~V~iHtdtlne~g~~E~t~aa~~gr~iH~~H~egaggghapdi~~~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~ 320 (568)
T PRK13985 241 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVC 320 (568)
T ss_pred CCEEEEeCCCCCCchhhHHHHHHhcCCeEEEEeccCCCccchhhHHHHcCCCCcccCCCCCCCCCccCchhhhcCeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCc
Q 004611 590 HHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLR 669 (742)
Q Consensus 590 hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~ 669 (742)
|||+++++||++|+++|||.++++++++|||+|++++++||+|+|||+||++.|+||.+++|+.+++.|..+...++|++
T Consensus 321 h~l~~~~~ed~afa~srir~~tiaaed~l~d~G~~s~~~SDs~~mgr~ge~~~r~~q~a~k~~~~~g~l~~~~~~~dnl~ 400 (568)
T PRK13985 321 HHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFR 400 (568)
T ss_pred cCCCCCCcchhhhhhhhccccccccCchhhhCCcEEEEeccchhhCcccceeeehHHHHHHHHHhcCCCCCccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876789999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEeccCCCCCCCCCCCCCCC
Q 004611 670 IRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 670 ~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~g~~~~~~~~~~p~~ 742 (742)
+++||++||+|||+++|+++++|||++||.|||||||+++|+.+|+.||++|+++|+.|||+|||||||||++
T Consensus 401 v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f~~~pe~vi~~G~iv~~~~gd~n~s~~t~~p~~ 473 (568)
T PRK13985 401 IKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVY 473 (568)
T ss_pred HHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccCCCChheEEECCEEEEccCCCCCCCCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=100.00 E-value=1.9e-115 Score=978.59 Aligned_cols=473 Identities=75% Similarity=1.203 Sum_probs=460.2
Q ss_pred ccCHHHHHhhhCCCCCCcccccCcccEEEEeccccccccccccCCCccccccccccCCCCCCCcccEEEEecEEEcCCCc
Q 004611 270 VISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHTGI 349 (742)
Q Consensus 270 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~e~~~g~gk~~r~~~~~~~~~~~~~~~dlVI~Na~Iid~~gi 349 (742)
+|||++|+++||||+||||||+||+||+|||||||.|||||+|||||++||||+|+...++.+.+|++|+|++|+|.+++
T Consensus 1 ~~~r~~y~~~~gpt~gd~~rl~dt~l~~~~e~d~~~~g~e~~~g~gk~~r~g~~~~~~~~~~~~~DlVI~Na~IiD~~gi 80 (567)
T cd00375 1 KISREAYADMYGPTTGDKVRLGDTDLWIEVEKDYTTYGDEVKFGGGKVLRDGMGQSSGYTREDVLDLVITNALIIDYTGI 80 (567)
T ss_pred CCChHHhhhhhCCCCCceeeecccceEEEEeecccccCceeeecCCceeecCCCCCCCCCccccCCEEEECeEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999888777788999999999998888
Q ss_pred eeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchHHHHHHHHHHHHHHhCCC
Q 004611 350 FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGT 429 (742)
Q Consensus 350 ~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~~~~al~~GvTTl~~gGt 429 (742)
.+++|+|+||||++|++.++++.|+++++++.++.++++||++|++|+|||||+|+|+.+|++...++..|+||++++|+
T Consensus 81 ~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P~~~~aAlagGVTTvI~~G~ 160 (567)
T cd00375 81 YKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICPQQIEEALASGITTMIGGGT 160 (567)
T ss_pred EEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCccHHHHHHcCCCcEEEcCCc
Confidence 89999999999999999988888889988899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHHc
Q 004611 430 GPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEY 509 (742)
Q Consensus 430 gp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e~ 509 (742)
+|+++++++++++++|.+++++++.+..++|++++++++.+..+.+.+++++|+.|+|+|++|+.++..+++++++|+++
T Consensus 161 gP~~gtnatp~t~g~~~l~~ml~aa~~~pin~g~~gkg~~~~l~eL~e~~~aGA~GfK~~eD~g~t~~~i~~aL~~A~~~ 240 (567)
T cd00375 161 GPAAGTKATTCTPGPWNIKRMLQAADGLPVNIGFLGKGNGSSPDALAEQIEAGACGLKLHEDWGATPAAIDTCLSVADEY 240 (567)
T ss_pred CcccccCCCCCCCCHHHHHHHHHHhhcCCceEEEEecCccccHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988877789999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEe
Q 004611 510 DIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVC 589 (742)
Q Consensus 510 g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~ 589 (742)
|+++.+|++++||.||+|.+++++.|+++|+||+++++|||+||+++.++++|+||||||||+|||.|+++||+||+|+|
T Consensus 241 dv~VaiHadtlne~g~~E~t~aa~~gr~iH~~H~egaggghapdi~~~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~ 320 (567)
T cd00375 241 DVQVAIHTDTLNESGFVEDTIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGHPNVLPSSTNPTRPFTVNTLDEHLDMLMVC 320 (567)
T ss_pred CCEEEEECCCCCcchHHHHHHHHhcCCeEEEEecCCCCcccchHHHHhcCCCCcccCCCCCCCCCccCchhhhcCeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCc
Q 004611 590 HHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLR 669 (742)
Q Consensus 590 hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~ 669 (742)
|||++++++|++|+++|||.+++++++.|||+|++++++||+|+|||+||++.|+||++++|+.+++.++++....++.+
T Consensus 321 h~l~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~s~~~sDs~~mgr~ge~~~r~~q~a~k~~~~~g~~~~~~~~~~n~r 400 (567)
T cd00375 321 HHLDPNIPEDVAFAESRIRAETIAAEDVLHDLGAISIMSSDSQAMGRVGEVILRTWQTAHKMKAQRGPLPEDSGDADNFR 400 (567)
T ss_pred cCCCCCCcchhhhhhhhccchhhccchhhhccCcEEEEccchhhcCccceeeechHHHHHHHHHhcCCCCcccccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998866689999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEeccCCCCCCCCCCCCCCC
Q 004611 670 IRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 670 ~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~g~~~~~~~~~~p~~ 742 (742)
+.+||+++|+|||+++|+++++|||++||+||||||++++|+.++.+||++|+++|+.|||+|+|||||||++
T Consensus 401 ~~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~f~~~p~~vi~~G~iv~~~~gd~nasipt~~p~~ 473 (567)
T cd00375 401 VKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAFFGVKPEMVLKGGFIAYAQMGDPNASIPTPQPVM 473 (567)
T ss_pred HHHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCcccCCCeeEEEECCEEEEecCCCccccCCCCCCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 5
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=1.3e-114 Score=971.99 Aligned_cols=469 Identities=63% Similarity=1.040 Sum_probs=450.7
Q ss_pred ccCHHHHHhhhCCCCCCcccccCcccEEEEeccccccccccccCCCccccccccccCCCCC-CCcccEEEEecEEEc-CC
Q 004611 270 VISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHY-AKSLDTVITNAVIID-HT 347 (742)
Q Consensus 270 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~e~~~g~gk~~r~~~~~~~~~~~-~~~~dlVI~Na~Iid-~~ 347 (742)
+|||++||++||||+||||||+||+||+|||||||.|||||+|||||++||||+|+.+..+ .+.+|++|+|++|+| .+
T Consensus 3 ~~~r~~y~~~~gpt~gd~~rl~dt~l~~~~e~d~~~~g~e~~~g~gk~~r~g~~~~~~~~~~~~~~DlVItNa~IIDp~~ 82 (569)
T PRK13308 3 TIDRRAYAELYGPTTGDRVRLADTSLLAEVEHDHTVYGDECLFGGGKTLRDGMGMAPGVTSADGALDFVLCNVTVIDPVL 82 (569)
T ss_pred cCChHHhhhhhCCCCCCeeeecccceEEEEeecccccCceeeecCCcccccCCCCCCCCCCccCcCCEEEECeEEEcCCC
Confidence 6999999999999999999999999999999999999999999999999999999776653 568899999999999 46
Q ss_pred CceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchHHHHHHHHHHHHHHhC
Q 004611 348 GIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGG 427 (742)
Q Consensus 348 gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~~~~al~~GvTTl~~g 427 (742)
++.+++|+|+||||++|++.++++.|++|++.+++++++++||++|++|+|||||+|+|+.+|++...++..|+||++++
T Consensus 83 Gi~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~Pg~~~aALagGVTTVi~g 162 (569)
T PRK13308 83 GIVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSAQLVDHALASGITTMLGG 162 (569)
T ss_pred CeEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCccHHHHHHcCCCcEEecC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHH
Q 004611 428 GTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAE 507 (742)
Q Consensus 428 Gtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~ 507 (742)
|++| ..++++++++.++.+++..+..++||+++++++.+..+.+.+++++|+.++|+|++|+.+++.+++++++|+
T Consensus 163 g~gP----t~p~~t~g~~~i~~~l~aa~~~pvN~g~~gkG~~s~~aeL~eli~aGA~GfKi~ed~g~t~~~i~~aL~~A~ 238 (569)
T PRK13308 163 GLGP----TVGIDSGGPFNTGRMLQAAEAWPVNFGFLGRGNSSKPAALIEQVEAGACGLKIHEDWGAMPAAIDTCLEVAD 238 (569)
T ss_pred CcCC----CCCCCCCCHHHHHHHHHHHhcCCccEEEEcCCcccCHHHHHHHHHCCCCEEeecCCCCCCHHHHHHHHHHHH
Confidence 8877 356678999999999999998999999999987777889999999999999999999999999999999999
Q ss_pred HcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEE
Q 004611 508 EYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLM 587 (742)
Q Consensus 508 e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~ 587 (742)
++|+++.+|++++||+||+|.+++++.|+++|+||++++++||+||+|+.+.++|+||||||||+|||.||++||+||+|
T Consensus 239 ~~dv~VaiHadtlne~g~~E~t~~a~~gr~iH~~H~egaggghapd~l~~~~~~n~lp~stnpt~p~t~nt~~e~~dm~m 318 (569)
T PRK13308 239 EYDFQVQLHTDTLNESGFVEDTLAAIGGRTIHMYHTEGAGGGHAPDIIRVVGEPHCLPSSTNPTNPYTVNTFDEHLDMTM 318 (569)
T ss_pred hcCCEEEEeCCCcCcchHHHHHHHHhcCCeEEEEeccCCccCchhHHHHHhCCCCccCCCCCCCCCCccCchhhhcCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCc-ccCC
Q 004611 588 VCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSA-ADND 666 (742)
Q Consensus 588 v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~-~~~~ 666 (742)
+||||++++++|++|+++|||.+++++++.|||+|++++++||+|+|||++|++.|+||++++|+.+++.|..+. ..++
T Consensus 319 ~~h~l~~~~~~d~afa~srir~~ti~ae~~l~d~g~~s~~~sds~~mgr~~e~i~r~~q~a~~~~~~~g~l~~~~~~~~d 398 (569)
T PRK13308 319 VCHHLNPDVPEDVAFAESRIRAQTIAAEDVLHDIGAISMLGSDSQGMGRIAEVIARTWQLASKMKDQRGPLPEDRGTFAD 398 (569)
T ss_pred EecCCCCCCcchhhhhhhhccceeeccCchhhcCCcEEEEecchHHHhHHHHHHHHHHHHHHHHhhcCCCCCcccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998774 3689
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEeccCCCCCCCCCCCCCCC
Q 004611 667 NLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 667 gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~g~~~~~~~~~~p~~ 742 (742)
|.++.+||+++|+|||+++|+++++|+|++||.||||+|++++|+.++..||++|+++|+.|||+|||||||||++
T Consensus 399 n~rv~r~L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~fgv~p~~ti~~G~iv~~~~gd~n~s~~t~~p~~ 474 (569)
T PRK13308 399 NARIKRYIAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAFFGIKPELVIKGGFPAWAAMGDANGSLMTCEPML 474 (569)
T ss_pred hhhhhHHHHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCcccCCCeeEEEECCEEEEecCCCCCcCcCCCcCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=9.5e-112 Score=952.98 Aligned_cols=472 Identities=66% Similarity=1.076 Sum_probs=455.6
Q ss_pred ccCHHHHHhhhCCCCCCcccccCcccEEEEeccccc----cccccccCCCccccccccccCCCCCCCcccEEEEecEEEc
Q 004611 270 VISREAYANMYGPTTGDKIQLGDTELYAEIESDFSV----YGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIID 345 (742)
Q Consensus 270 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~----~g~e~~~g~gk~~r~~~~~~~~~~~~~~~dlVI~Na~Iid 345 (742)
+|||++|+++||||+||||||+||+||+|||||||. |||||+|||||++||||+|+...++.+.+|++|+|++|+|
T Consensus 3 ~~~r~~y~~~~gpt~gd~~rl~dt~l~~~~e~d~~~~~~~~g~e~~~g~gk~~r~g~~~~~~~~~~~~~DlVI~Na~IiD 82 (573)
T PRK13206 3 RLSRERYAALYGPTTGDRIRLADTDLLIEVTEDRSGGPGLAGDEAVFGGGKVIRESMGQGRATRAEGAPDTVITGAVILD 82 (573)
T ss_pred cCChHHhhhhhCCCCCceeeecccceEEEEeecccccCCCCCceeeecCCcccccccCccCCCCCCCCCCEEEECeEEEC
Confidence 799999999999999999999999999999999999 9999999999999999999988877778999999999999
Q ss_pred CCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchHHHHHHHHHHHHHH
Q 004611 346 HTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLV 425 (742)
Q Consensus 346 ~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~~~~al~~GvTTl~ 425 (742)
.+++.+++|+|+||||++|++.++++.|++|.+++.++.++++||++|++|+|||||+|+|+.+|++...+++.|+||++
T Consensus 83 ~~gi~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~Pg~~~aALagGVTTvi 162 (573)
T PRK13206 83 HWGIVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICPQIVDEALAAGITTLI 162 (573)
T ss_pred CCCeEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCchHHHHHHcCCeEEEE
Confidence 88888899999999999999988888899998888988899999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHH
Q 004611 426 GGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTV 505 (742)
Q Consensus 426 ~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~ 505 (742)
++|++|..+++.++++++.+.+.+++++.+..++||+++++++....+.+.+++++|+.|+|+|++|+.+++.+++++++
T Consensus 163 ~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~~~pvn~g~~g~g~~~~~~~L~el~~aGA~GfKi~~d~g~t~~~i~~aL~~ 242 (573)
T PRK13206 163 GGGTGPAEGSKATTVTPGAWHLARMLEALDGWPVNVALLGKGNTVSAEALWEQLRGGAGGFKLHEDWGSTPAAIDACLRV 242 (573)
T ss_pred cCCCCccccCcccccccchhHHHHHHHHhhcCceeEEEecCcCcCCHHHHHHHHHCCCcEEeecCccCCCHHHHHHHHHH
Confidence 99999999888888999999999999999899999999999887778899999999999999999999999999999999
Q ss_pred HHHcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcce
Q 004611 506 AEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDM 585 (742)
Q Consensus 506 A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~ 585 (742)
|+++|+++.+|++++||+||+|.+++++.|+++|+||++++++||+||+|+.++++|+||||||||+|||.||++||+||
T Consensus 243 A~~~gv~V~iHadtlne~g~~E~t~aa~~gr~iH~~H~egaggghapd~~~~~~~~n~lp~stnpt~p~~~nt~~e~~~m 322 (573)
T PRK13206 243 ADAAGVQVALHSDTLNEAGFVEDTLAAIAGRSIHAYHTEGAGGGHAPDIITVASHPNVLPSSTNPTRPHTVNTLDEHLDM 322 (573)
T ss_pred HHHhCCEEEEECCCccccchhhHHHHHhcCCeEEEEeccCCCcCcccHHHHhcCCCCCcCCCCCCCCCCcccchhhhhCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccC
Q 004611 586 LMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADN 665 (742)
Q Consensus 586 l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~ 665 (742)
+|+||||++++++|++|+++|||.+++++++.|+|+|++++++||+|+|||+||.+.++|+.+++|+.+++.+.... ..
T Consensus 323 ~m~~h~l~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e~~~~~~q~a~~~~~rr~~l~g~~-~~ 401 (573)
T PRK13206 323 LMVCHHLNPAVPEDLAFAESRIRPSTIAAEDVLHDMGAISMIGSDSQAMGRIGEVVLRTWQTAHVMKRRRGALPGDG-RA 401 (573)
T ss_pred EEeeccCCCCCcchhhhhhhhccceeeccCchHhhCCcEEeccCCccccccccchhhhHHHHHHHHHhccCCCCCCC-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776543 37
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEeccCCCCCCCCCCCCCCC
Q 004611 666 DNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 666 ~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~g~~~~~~~~~~p~~ 742 (742)
+++++++||++||+|||+++|+++.+|+|++||.||||+||+++|+.++..||++|+++|+.|||+|+|||||||++
T Consensus 402 ~~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~f~~~~~~ti~~G~iv~~~~gd~nasipt~qp~~ 478 (573)
T PRK13206 402 DNNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAFFGVRPHAVLKGGAIAWAAMGDANASIPTPQPVL 478 (573)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECccccCCCccEEEECCEEEEecCCChhhcCCCCCCch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999985
No 7
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=100.00 E-value=2.4e-109 Score=937.08 Aligned_cols=471 Identities=71% Similarity=1.156 Sum_probs=447.6
Q ss_pred ccCHHHHHhhhCCCCCCcccccCcccEEEEeccccccccccccCCCcccccccccc-CCCCCCCcccEEEEecEEEcCCC
Q 004611 270 VISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQA-CGHHYAKSLDTVITNAVIIDHTG 348 (742)
Q Consensus 270 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~e~~~g~gk~~r~~~~~~-~~~~~~~~~dlVI~Na~Iid~~g 348 (742)
+|||++||++||||+||+|||+||+||+|||||||.|||||+|||||++||||+|+ ...+..+.+|++|+|++|+|.++
T Consensus 1 ~~~~~~y~~~~gpt~gd~~rl~dt~l~~~~e~d~~~~g~e~~~g~gk~~r~~~~~~~~~~~~~~~MDlVIkNg~VID~~g 80 (567)
T TIGR01792 1 KMSREQYASLYGPTTGDKVRLGDTDLFVEVEKDLTTYGDESKFGGGKVLRDGMGQNATLTRNAGVLDLVITNALILDWTG 80 (567)
T ss_pred CCChHHhhhhhCCCCCCeeeecccceEEEEeecccccCceeeecCCceeecCCCCCCCCCCccccCcEEEECeEEECCCC
Confidence 48999999999999999999999999999999999999999999999999999994 44444568899999999999888
Q ss_pred ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchHHHHHHHHHHHHHHhCC
Q 004611 349 IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGG 428 (742)
Q Consensus 349 i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~~~~al~~GvTTl~~gG 428 (742)
+.+++|+|+||||++|++.++++.|++++ ++++.++++||++|++|+|||||+|+|+.+|++...++..|+||++.+|
T Consensus 81 i~kaDI~IkDGrIaaIG~~~~p~~~~~v~--~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P~~~~aAl~gGVTTmI~~G 158 (567)
T TIGR01792 81 IYKADIGIKNGRIVGIGKAGNPDTMDGVD--MIVGASTEAISGEGKIVTAGGIDTHVHYISPQQVQAALDNGITTLIGGG 158 (567)
T ss_pred eEEEEEEEECCEEEEEcCCCccccccccc--ccCCCCCeEEECCCCEEEECeEEeecCCCCccHHHHHHhCceEEEecCC
Confidence 88999999999999999988887777663 6677889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHH
Q 004611 429 TGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEE 508 (742)
Q Consensus 429 tgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e 508 (742)
++|.++++.++++++.+...+++++.+..++++++.+++.....+.+.+++++|+.++|+|++|+++++.+++++++|++
T Consensus 159 tgp~~~t~pTt~t~~~~~~~~~l~aa~~~~in~g~~g~g~~~~~~~L~e~i~aGa~gfK~h~~y~~s~e~L~~al~~A~e 238 (567)
T TIGR01792 159 TGPADGTNATTCTPGPWYLHRMLQAADGLPINFGFTGKGSGSGPAALIEQIEAGACGLKVHEDWGATPAAIDNALSVADE 238 (567)
T ss_pred CccccCCCCcccccchhhHHHHHHHhccCCccEEEEeCCccchHHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999898998899999999987766667788899999999999999999999999999999999
Q ss_pred cCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEE
Q 004611 509 YDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMV 588 (742)
Q Consensus 509 ~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v 588 (742)
+|+++++|+++++|.||++.+++++.++++|++|.+++|+||+||+|+.++++|+||||||||+|||.|+++||+||+|+
T Consensus 239 ~gv~V~iH~ET~~E~g~ve~t~~a~g~rpIh~~H~~G~g~ghapdi~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~~~ 318 (567)
T TIGR01792 239 YDVQVAVHTDTLNESGFVEDTIAAFKGRTIHTYHTEGAGGGHAPDIIVVVGYNNILPSSTNPTLPYTVNTIDEHLDMLMV 318 (567)
T ss_pred cCCEEEEeCCCcccchHHHHHHHHHCCCcchhHhhcCCCCCcHHHHHHHcCCCCcccCCCCCCCCCccCchhhhcCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCC
Q 004611 589 CHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNL 668 (742)
Q Consensus 589 ~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl 668 (742)
||||++++++|++|+++|||.+++++++.|||+|++++++||+|+|||+||++.|+||.+++|+.+++.+..+.....+.
T Consensus 319 ~h~l~~~~~~d~~~a~~r~r~~t~~ae~~l~d~G~~~~~~sDs~~mgr~~~~~~r~~q~a~k~~~~~g~~~~~~~~~~~~ 398 (567)
T TIGR01792 319 CHHLNPKIPEDVAFAESRIRKETIAAEDVLQDMGAISMISSDSQAMGRIGEVVTRCWQTADKMKKQRGPLPGDSPGNDNN 398 (567)
T ss_pred eccCCCCCcccchhhhhhccceeccccchhhhCCcEEEecCCchhhCcccceeechHHHHHHHHHhcCCCcccccCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998776556678
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEeccCCCCCCCCCCCCCCC
Q 004611 669 RIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 669 ~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~g~~~~~~~~~~p~~ 742 (742)
++.++|++||+|||+++|+++++|||++||.||||||++++|+.+|+.||++|+++|..+||+|+|+|||||++
T Consensus 399 rl~r~L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~f~~~p~~v~~~G~i~~~~~Gd~~as~p~~~p~~ 472 (567)
T TIGR01792 399 RVKRYVAKYTINPAITHGISDYIGSIEVGKLADLVLWEPAFFGVKPDMVLKGGLIAWAIMGDPNASIPTPQPVL 472 (567)
T ss_pred hHHHHHHHHhHHHHHHcCcccCceeeCCCCccCEEEEcCcccCCChheEEECCEEEEEeCCCccccCCCCCCch
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999985
No 8
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=5.3e-108 Score=924.88 Aligned_cols=472 Identities=74% Similarity=1.189 Sum_probs=451.8
Q ss_pred cccCHHHHHhhhCCCCCCcccccCcccEEEEeccccccccccccCCCccccccccccCCCCCCCcccEEEEecEEEcCCC
Q 004611 269 TVISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHTG 348 (742)
Q Consensus 269 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~e~~~g~gk~~r~~~~~~~~~~~~~~~dlVI~Na~Iid~~g 348 (742)
++|||++||+|||||+||+|||+||+||+|||||||.|||||+|||||++||||+|+.+.++.+.+|++|+|++|+|.++
T Consensus 2 ~~~~r~~y~~~~gpt~gd~~rl~dt~l~~~~e~d~~~~g~e~~~g~gk~~r~~~~~~~~~~~~~~mDlVI~Na~Vvd~~g 81 (568)
T PRK13207 2 AKISRRAYAEMYGPTTGDRVRLADTELWIEVEKDFTTYGEEVKFGGGKVIRDGMGQSQRARADGAVDTVITNALILDHWG 81 (568)
T ss_pred cccCHHHHHHhhCCCCCceeeecCCceEEEEeccccccCceeeccCCeeeccccCcCCCCCccccCCEEEECeEEECCCC
Confidence 57999999999999999999999999999999999999999999999999999999998877778999999999999888
Q ss_pred ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchHHHHHHHHHHHHHHhCC
Q 004611 349 IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGG 428 (742)
Q Consensus 349 i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~~~~al~~GvTTl~~gG 428 (742)
+.+++|+|+||||++|++.++++.|++|. ++++.++++||++|++|+|||||+|+|+.+|++...++..|+||++++|
T Consensus 82 i~~adI~I~dGrI~~IG~~~~p~~~~~v~--~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P~~~~aALagGVTTVi~mg 159 (568)
T PRK13207 82 IVKADIGIKDGRIVAIGKAGNPDIQDGVD--IIIGPGTEVIAGEGLIVTAGGIDTHIHFICPQQIEEALASGVTTMIGGG 159 (568)
T ss_pred eEEEEEEEECCEEEEEeCCCCcccccccc--ccCCCCCeEEECCCCEEEeCeEECccCCccccHHHHHHcCCCCEEEcCC
Confidence 88999999999999999988888888775 5667789999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHH
Q 004611 429 TGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEE 508 (742)
Q Consensus 429 tgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e 508 (742)
++|.++++.++++++.|.++.+++..+..+++++++++++.+..+.+++++++|+.++|+|++|+.+++.+++++++|++
T Consensus 160 ~gP~~gt~~~t~tpG~~~l~~~l~~a~~~pin~g~~g~g~~~~~~~L~e~i~aGA~gfKi~~d~g~t~~~l~~aL~~A~~ 239 (568)
T PRK13207 160 TGPATGTNATTCTPGPWHIHRMLQAADAFPMNIGFLGKGNASLPEALEEQIEAGAIGLKLHEDWGATPAAIDNCLSVADE 239 (568)
T ss_pred cCCccCCcccccccchHHHHHHHHHhhcCCceEEEEcCCCcccHHHHHHHHHcCCCEEeecCCCCCCHHHHHHHHHHHHH
Confidence 99988889999999999999999988889999999988876778899999999999999999999999999999999999
Q ss_pred cCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEE
Q 004611 509 YDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMV 588 (742)
Q Consensus 509 ~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v 588 (742)
+|+++.+|++++|+.||++.+++++.|+.+|+||.++++++|+||+++.++++|++|||||||+|||.||++||+||+|+
T Consensus 240 ~gv~V~iHa~tlne~G~~e~t~~a~~g~~iH~~H~egaggghapdii~~~~~~~v~p~st~pt~p~~~~~~~e~~~m~m~ 319 (568)
T PRK13207 240 YDVQVAIHTDTLNESGFVEDTIAAFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPSSTNPTRPYTVNTIDEHLDMLMV 319 (568)
T ss_pred hCCEEEEeCCCcccchHHHHHHHhcCCCEEEEEeecCCCcCCchHHHHHhhcCCCccCCCCCCCCCccCchhhhcCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCC
Q 004611 589 CHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNL 668 (742)
Q Consensus 589 ~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl 668 (742)
||||++++++|++|+++|||.++++++++|+|+|++++++||+|+|+|+|+.+.++||.+.+++.+++.+..+....++.
T Consensus 320 ~h~l~~~~~~d~~~a~srir~~t~~ae~~l~d~Ga~~~~~SD~p~~~~~~~~~~r~~q~A~~r~~~~G~~~~d~~~~~n~ 399 (568)
T PRK13207 320 CHHLDPSIPEDVAFAESRIRRETIAAEDILHDLGAISMISSDSQAMGRVGEVIIRTWQTAHKMKVQRGPLPGDSGRNDNF 399 (568)
T ss_pred ecCCCCCCcchhhhhhhhccceeecccchhhhCCCEEEecCCcccccccccchhHHHHHHHHHHHccCCCCcccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888886665456778
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEeccCCCCCCCCCCCCCCC
Q 004611 669 RIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 669 ~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~g~~~~~~~~~~p~~ 742 (742)
++.++|+++|+|||+++|+++++|||++||.||||||++++|+.++..||++|+++|+.|||+|+|||||||++
T Consensus 400 ri~~~l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~f~~~~~~ti~~G~iv~~~~gd~~as~p~~~p~~ 473 (568)
T PRK13207 400 RVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPAFFGVKPELVLKGGMIAWAPMGDPNASIPTPQPVH 473 (568)
T ss_pred hHHHHHHHHhHHHHHHcCCCcCccccCCCCcCCEEEECchhcCCCceEEEECCEEEEecCCCccccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 9
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=6.3e-107 Score=918.23 Aligned_cols=473 Identities=60% Similarity=0.990 Sum_probs=453.1
Q ss_pred ccCHHHHHhhhCCCCCCcccccCcccEEEEeccccccccccccCCCccccccccccCCCCCC-CcccEEEEecEEEc-CC
Q 004611 270 VISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHYA-KSLDTVITNAVIID-HT 347 (742)
Q Consensus 270 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~e~~~g~gk~~r~~~~~~~~~~~~-~~~dlVI~Na~Iid-~~ 347 (742)
+|||++||++||||+||+|||+||+||+|||||||.|||||+|||||++||||+|+.+...+ +.+|+||+|++|+| .+
T Consensus 3 ~~~~~~y~~~~gpt~gd~~rl~dt~l~~~~e~d~~~~g~e~~~g~gk~~r~~~~~~~~~~~~~~~~DlVI~Ng~ViD~~~ 82 (572)
T PRK13309 3 QISRQEYAGLFGPTTGDKIRLGDTNLFIEIEKDLRGYGDESVYGGGKSLRDGMGANNNLTRDNGVLDLVITNVTIVDARL 82 (572)
T ss_pred cCChHHhhhhhCCCCCceeeecccceEEEEeecccccCceeeeCCCceeecCCCCCCCCCCCcCcCCEEEECeEEEcCCC
Confidence 79999999999999999999999999999999999999999999999999999998855444 58899999999999 47
Q ss_pred CceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchHHHHHHHHHHHHHHhC
Q 004611 348 GIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGG 427 (742)
Q Consensus 348 gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~~~~al~~GvTTl~~g 427 (742)
++.+++|+|+||||++||+.++|++|++|+++++++.++++||++|++|+|||||+|+|+.+|++...++..|+||++++
T Consensus 83 gi~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P~~~~aAl~gGVTTvi~~ 162 (572)
T PRK13309 83 GVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISPQQAYHALSNGVTTFFGG 162 (572)
T ss_pred CEEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCcchHHHHHcCceEEEEec
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHH
Q 004611 428 GTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAE 507 (742)
Q Consensus 428 Gtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~ 507 (742)
|++|++++++++++++.|.++.+++..+..+++++++++++.+....+.+++++|+.|+|+|++|+.+++.+.+++++|+
T Consensus 163 G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~pvn~g~~gkg~~~~~~~l~el~~aGa~gfk~~~d~g~t~~~L~~aLe~A~ 242 (572)
T PRK13309 163 GIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVNVGILGKGNSYGRGPLLEQAIAGVAGYKVHEDWGATAAALRHALRVAD 242 (572)
T ss_pred CCCCccCCCCCCCCCCHHHHHHHHHHhccCCcCEEEEcCCCCCCHHHHHHHHhcCcEEEEecCcCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887766788899999999999999999999999999999999
Q ss_pred HcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEE
Q 004611 508 EYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLM 587 (742)
Q Consensus 508 e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~ 587 (742)
++|+++.+|++++||.++++.+++++.++++|+||.+++++||+||+++.++++|+||||||||+|||.||++||+||+|
T Consensus 243 ~~gv~VaiH~d~lnE~g~vE~~~aa~~grpih~~H~~Gaggghapd~~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~m 322 (572)
T PRK13309 243 EVDIQVAVHTDSLNECGYVEDTIDAFEGRTIHTFHTEGAGGGHAPDIIKVASQTNVLPSSTNPTLPYGVNSQAELFDMIM 322 (572)
T ss_pred hcCCEEEEeCCccccchhHHHHHHHhCCCceeeeeccCcccCCchhHHHhcCCCCcccCCCCCCCCCcccchHhhhchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCC
Q 004611 588 VCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDN 667 (742)
Q Consensus 588 v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~g 667 (742)
+||||+++++||++|+++|++.+++.+++.|+|+|++++++||++.|+|.++...++|+.+..++.+++.+.......++
T Consensus 323 ~~h~l~~~~~~D~~~a~srig~e~~~a~~~l~daGa~~~~gSD~pv~gr~~~~p~~~iq~Av~rk~~~g~l~~~~~~~~~ 402 (572)
T PRK13309 323 VCHNLNPNVPADVAFAESRVRPETIAAENVLHDMGVISMFSSDSQAMGRVGENWLRAIQTADAMKAARGKLPEDAAGNDN 402 (572)
T ss_pred hhccCCCCCCCChhHHHHhhCchhhcchhHHHhCCCEEEEcCCCCcccCCcccHHHHHHHHHHHHhccCCCCccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998777776543334688
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEeccCCCCCCCCCCCCCCC
Q 004611 668 LRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 668 l~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~g~~~~~~~~~~p~~ 742 (742)
+++.+||++||+|||+++|+++++|||++||.|||||||+++|+.++.+||++|+++|+.|||+|+|||||||++
T Consensus 403 ~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f~~~~~~vi~~G~iv~~~~gd~~as~p~~~p~~ 477 (572)
T PRK13309 403 FRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRFFGAKPKMVIKGGMINWAAMGDPNASLPTPQPVF 477 (572)
T ss_pred ccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhhcCCCccEEEECCEEEEecCCCccccCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985
No 10
>PRK13986 urease subunit alpha; Provisional
Probab=100.00 E-value=2.7e-106 Score=790.70 Aligned_cols=225 Identities=53% Similarity=0.828 Sum_probs=219.8
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHccccccCCCcCCChhhcccc
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~~~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|||||||+|||+||+||+|||||++||||||||||+||||++|||+||||++||+|||++|+++|++||||||||+||++
T Consensus 1 M~LtprE~ekL~i~~a~~lA~~R~~rGlkLN~pEAvAlI~~~i~E~aRdG~~svaelm~~g~~~L~~~dVm~GV~~ml~~ 80 (225)
T PRK13986 1 MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTVAELMQEGRTLLKPDDVMDGVASMIHE 80 (225)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhhhCCHHhcccChHHhcce
Confidence 99999999999999999999999999999999999999999999999999669999999999999999999999999999
Q ss_pred eeeeeecCCCceeEEeecCccCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCeeEeCCCceeeCCCCceEEEEEEeCC
Q 004611 81 VQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPVPAMDKFPGIEDNNVPGRIIPGGGSITLNHGRKAVILKVVNTG 160 (742)
Q Consensus 81 ~~ve~~f~~g~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~ 160 (742)
||||+||||||||||||+||+ .+++ ++||||++++++|+||+||++++|+|+|+|
T Consensus 81 vqVEatFpDGTkLVtvh~PI~-~~~~------------------------~~PGe~~~~~~~I~lN~gr~~~~l~V~NtG 135 (225)
T PRK13986 81 VGIEAMFPDGTKLVTVHTPIE-ANGK------------------------LVPGELFLKDEDITINAGKKAVSVKVKNVG 135 (225)
T ss_pred eeEEEEcCCCCEEEEeCCCcC-CCCC------------------------CCCceEecCCCCeecCCCCcEEEEEEEeCC
Confidence 999999999999999999999 4443 789999999999999999999999999999
Q ss_pred CcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEEEecCceEEeccCCccCCCCCcccHHHHH
Q 004611 161 DRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAAM 240 (742)
Q Consensus 161 dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 240 (742)
||||||||||||||||+||+|||++|||||||||||||||||||++|+|+||+|||.|+|+|||||++|++|...+++++
T Consensus 136 DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG~r~v~G~ngl~~G~~d~~~~~~~l 215 (225)
T PRK13986 136 DRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELIDIGGNRRIFGFNALVNRQADNESKKIAL 215 (225)
T ss_pred CCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccCceEEecCCcccCCccCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHhcCCC
Q 004611 241 EAVKLRQFGN 250 (742)
Q Consensus 241 ~~~~~~~~~~ 250 (742)
++++++||.+
T Consensus 216 ~~~~~~GF~~ 225 (225)
T PRK13986 216 HRAKERGFHG 225 (225)
T ss_pred HHHHHcccCC
Confidence 9999999975
No 11
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=100.00 E-value=1.9e-103 Score=762.56 Aligned_cols=208 Identities=61% Similarity=0.979 Sum_probs=205.7
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHccccccCCCcCCChhhcccc
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~~~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|||||||+|||+||+||+|||||++||||||||||+||||+++||+|||| +||||||++|+++|++|||||||++||++
T Consensus 1 M~LtprE~ekL~i~~a~~lA~~R~~rGlkLN~pEAvAlI~~~v~E~aRdG-~svaelm~~g~~~L~~~dVm~GV~~ml~~ 79 (208)
T PRK13192 1 MRLTPTELDRLLLFTAAELARKRRARGLKLNYPEAVALIADEVLEAARDG-RSVAELIDLGRTILTTDDVLPGVADMVPE 79 (208)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHhhcC-CCHHHHHHHhhhhCCHHhcccChHhhcce
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred eeeeeecCCCceeEEeecCccCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCeeEeCCCceeeCCCCceEEEEEEeCC
Q 004611 81 VQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPVPAMDKFPGIEDNNVPGRIIPGGGSITLNHGRKAVILKVVNTG 160 (742)
Q Consensus 81 ~~ve~~f~~g~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~ 160 (742)
||||+||||||||||||+||++++++|++|| +||||++++++|+||+||++++|+|+|+|
T Consensus 80 vqVEatFpDGTkLVtvh~PI~~~~~~~~~al--------------------~PGei~~~~~~I~lN~gr~~~~l~V~NtG 139 (208)
T PRK13192 80 VQVEATFPDGTKLVTVHDPIRPAEGDLADAL--------------------YPGEILPGDGEIELNAGRPAVTLDVTNTG 139 (208)
T ss_pred eeEEEEcCCCCEEEEecCCcCCCCCchhhcc--------------------CCCEEEcCCCCeeeCCCCCEEEEEEEeCC
Confidence 9999999999999999999999999998887 49999999999999999999999999999
Q ss_pred CcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEEEecCceEEeccCCccCC
Q 004611 161 DRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDG 229 (742)
Q Consensus 161 dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~~~g~~~~~g~~~~~~~ 229 (742)
||||||||||||||+|+||+|||++|||||||||||||||||||++|+|+||+|||.|+|+||||+++|
T Consensus 140 DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG~r~v~G~~gl~~G 208 (208)
T PRK13192 140 DRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLVPIGGARVVIGFNGLTNG 208 (208)
T ss_pred CCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccCceEEEcccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
No 12
>PRK13203 ureB urease subunit beta; Reviewed
Probab=100.00 E-value=4.1e-56 Score=388.01 Aligned_cols=102 Identities=57% Similarity=0.930 Sum_probs=100.6
Q ss_pred CCCCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEE
Q 004611 131 NVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 131 ~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
|+||||++++++|+||+||++++|+|+|+|||||||||||||||||+||+|||++|||||||||||||||||||++|+|+
T Consensus 1 m~PGe~~~~~~~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~ 80 (102)
T PRK13203 1 MIPGEYITADGEIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVE 80 (102)
T ss_pred CCCceEecCCCCEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEeccCCccCCCCC
Q 004611 211 LISIGGRKVIRGGNGIVDGPTD 232 (742)
Q Consensus 211 l~~~~g~~~~~g~~~~~~~~~~ 232 (742)
||+|||.|+|+|||||++|++|
T Consensus 81 LV~~gG~r~v~G~ngl~~G~~d 102 (102)
T PRK13203 81 LVPLAGARRVYGFRGKVMGKLD 102 (102)
T ss_pred EEEccCceEEEccCccccCcCC
Confidence 9999999999999999999986
No 13
>PRK13198 ureB urease subunit beta; Reviewed
Probab=100.00 E-value=1.3e-55 Score=408.80 Aligned_cols=121 Identities=45% Similarity=0.690 Sum_probs=117.0
Q ss_pred CCCCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEE
Q 004611 131 NVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 131 ~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
+.||||++++++|+||+||++++|+|+|+|||||||||||||||||+||+|||++|||||||||||||||||||++|+|+
T Consensus 29 ~~pGei~~~~g~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~ 108 (158)
T PRK13198 29 TPLGGLVLAETPITFNENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVP 108 (158)
T ss_pred CCCceEEeCCCCeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEeccCCccCCCCCc--------ccHHHHHHHHHHhcCCCC
Q 004611 211 LISIGGRKVIRGGNGIVDGPTDD--------AGCSAAMEAVKLRQFGNQ 251 (742)
Q Consensus 211 l~~~~g~~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 251 (742)
||+|||.|+|+|||||++|+++. ..+++|+++++++||.+.
T Consensus 109 LV~~gG~r~V~Gfnglv~G~ld~~~~~~~~~~~~~~Al~~a~~~GF~~~ 157 (158)
T PRK13198 109 LIPFGGKQTLYGFNNLVDGWTGEGVVPNSERPDKLAAIRLAAERGFKSS 157 (158)
T ss_pred EEEccCceEEEccCccccCccccccccccccchHHHHHHHHHHcCcccC
Confidence 99999999999999999999953 357899999999999875
No 14
>PRK13204 ureB urease subunit beta; Reviewed
Probab=100.00 E-value=9.7e-56 Score=409.92 Aligned_cols=122 Identities=46% Similarity=0.736 Sum_probs=117.9
Q ss_pred CCCCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEE
Q 004611 131 NVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 131 ~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
++||||++++++|+||+||++++|+|+|+|||||||||||||||||+||+|||++|||||||||||||||||||++|+|+
T Consensus 24 ~~pGei~~~~~~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~ 103 (159)
T PRK13204 24 RPVGGYVLAKDPIEINQGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVT 103 (159)
T ss_pred CCCCeEEeCCCCeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEeccCCccCCCCCc-------ccHHHHHHHHHHhcCCCCC
Q 004611 211 LISIGGRKVIRGGNGIVDGPTDD-------AGCSAAMEAVKLRQFGNQE 252 (742)
Q Consensus 211 l~~~~g~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 252 (742)
||+|||.|+|+|||||++|++++ ..+.+|+++++++||.+..
T Consensus 104 LV~~gG~r~V~Gfnglv~G~l~~~~~~~~~~~~~~Al~ra~~~GF~~~~ 152 (159)
T PRK13204 104 LVPFAGKRFIFGFNNLVDGWSGDGPTPDYQPNREIAAERAEKLGFKSCK 152 (159)
T ss_pred EEEccCceEEEccCccccccccccccccccchHHHHHHHHHHcCCcccc
Confidence 99999999999999999999942 4578999999999999883
No 15
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=100.00 E-value=7.6e-56 Score=385.65 Aligned_cols=101 Identities=60% Similarity=0.983 Sum_probs=99.5
Q ss_pred CCCCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEE
Q 004611 131 NVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 131 ~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
|+||||++++++|+||+||++++|+|+|+|||||||||||||||||+||+|||++||||||||||||||||||||+|+|+
T Consensus 1 m~PGei~~~~~~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~ 80 (101)
T TIGR00192 1 MIPGELQLAEGDITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVE 80 (101)
T ss_pred CCCceEecCCCCEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEeccCCccCCCC
Q 004611 211 LISIGGRKVIRGGNGIVDGPT 231 (742)
Q Consensus 211 l~~~~g~~~~~g~~~~~~~~~ 231 (742)
||+|||.|+|+|||||++|++
T Consensus 81 LV~~gG~r~v~G~~gl~~G~l 101 (101)
T TIGR00192 81 LVAIGGNRRIYGFNGLVDGQL 101 (101)
T ss_pred EEEccCceEEEccCccccCCC
Confidence 999999999999999999975
No 16
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-56 Score=381.46 Aligned_cols=104 Identities=59% Similarity=1.011 Sum_probs=102.2
Q ss_pred CCCCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEE
Q 004611 131 NVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 131 ~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
|+||||++++|+|+||+||++++++|.|||||||||||||||||||+||+|||++||||||||||||||||||||+|+|+
T Consensus 1 miPGe~~~~~g~IelN~gr~~~~i~V~NtGDRPIQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~ 80 (106)
T COG0832 1 MIPGEIILASGDIELNAGRPTVTIEVANTGDRPIQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVE 80 (106)
T ss_pred CCCceeEecCccEEEeCCCcceEEEEeecCCCceEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEeccCCccCCCCCcc
Q 004611 211 LISIGGRKVIRGGNGIVDGPTDDA 234 (742)
Q Consensus 211 l~~~~g~~~~~g~~~~~~~~~~~~ 234 (742)
||+|||+|.|||||++++|++++.
T Consensus 81 LV~~~G~r~v~Gf~~~v~G~l~~~ 104 (106)
T COG0832 81 LVPLGGKREVYGFNGLVDGELDDE 104 (106)
T ss_pred EEEccCceEEeccccccccccccc
Confidence 999999999999999999999764
No 17
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=100.00 E-value=1.7e-55 Score=384.21 Aligned_cols=101 Identities=65% Similarity=1.076 Sum_probs=99.5
Q ss_pred CCCCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEE
Q 004611 131 NVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 131 ~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
|+||||++++++|+||+||++++|+|+|+|||||||||||||||||+||+|||++|||||||||||||||||||++|+|+
T Consensus 1 m~PGei~~~~~~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~ 80 (101)
T cd00407 1 MIPGEIILKEGDIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVE 80 (101)
T ss_pred CCCceEEeCCCCeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEeccCCccCCCC
Q 004611 211 LISIGGRKVIRGGNGIVDGPT 231 (742)
Q Consensus 211 l~~~~g~~~~~g~~~~~~~~~ 231 (742)
||+|||.|+|+|||+|++|++
T Consensus 81 LV~~~G~r~v~G~~~l~~G~l 101 (101)
T cd00407 81 LVPIGGKRRVYGFNGLVNGPL 101 (101)
T ss_pred EEEccCceEEEccCccccCcC
Confidence 999999999999999999975
No 18
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=100.00 E-value=1e-55 Score=384.21 Aligned_cols=100 Identities=61% Similarity=1.072 Sum_probs=83.1
Q ss_pred CCCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEE
Q 004611 132 VPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKL 211 (742)
Q Consensus 132 ~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l 211 (742)
+||||++++++|+||+||++++|+|+|+|||||||||||||||||+||+|||++||||||||||||||||||||+|+|+|
T Consensus 1 iPGei~~~~~~I~lN~gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~L 80 (100)
T PF00699_consen 1 IPGEIILADGDIELNAGRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVEL 80 (100)
T ss_dssp -TT-EE--SSEEETTTTSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEE
T ss_pred CCCeEEeCCCcEEecCCCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCceEEeccCCccCCCC
Q 004611 212 ISIGGRKVIRGGNGIVDGPT 231 (742)
Q Consensus 212 ~~~~g~~~~~g~~~~~~~~~ 231 (742)
|+|||.|+|+|||+|++|++
T Consensus 81 V~~gG~r~v~G~~~l~~G~l 100 (100)
T PF00699_consen 81 VPIGGNRRVYGFNGLVNGPL 100 (100)
T ss_dssp EE-STT-EE-STTSSSSEET
T ss_pred EEccCCeEEEcCCcccCCCC
Confidence 99999999999999999975
No 19
>PRK13202 ureB urease subunit beta; Reviewed
Probab=100.00 E-value=4.9e-55 Score=381.78 Aligned_cols=102 Identities=45% Similarity=0.752 Sum_probs=100.3
Q ss_pred CCCCeeEeCCCceeeCCCC-ceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEE
Q 004611 131 NVPGRIIPGGGSITLNHGR-KAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIV 209 (742)
Q Consensus 131 ~~pg~~~~~~~~~~~~~~~-~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v 209 (742)
|+||||++++++|+||+|| ++++|+|+|+|||||||||||||||||+||+|||++||||||||||||||||||||+|+|
T Consensus 1 m~PGei~~~~~~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V 80 (104)
T PRK13202 1 MIPGEIFYGSGDIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIV 80 (104)
T ss_pred CCCceEecCCCCEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEE
Confidence 6799999999999999995 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceEEeccCCccCCCCC
Q 004611 210 KLISIGGRKVIRGGNGIVDGPTD 232 (742)
Q Consensus 210 ~l~~~~g~~~~~g~~~~~~~~~~ 232 (742)
+||+|||.|+|+|||++++|++|
T Consensus 81 ~LV~~gG~r~v~G~~~~~~G~l~ 103 (104)
T PRK13202 81 GLVPLGGRREVPGLTLNPPGRLD 103 (104)
T ss_pred EEEEccCCeEEEcCCcccCCccc
Confidence 99999999999999999999987
No 20
>PRK13201 ureB urease subunit beta; Reviewed
Probab=100.00 E-value=2.7e-54 Score=391.68 Aligned_cols=105 Identities=45% Similarity=0.827 Sum_probs=102.7
Q ss_pred CCCCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEE
Q 004611 131 NVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 131 ~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
|+||||++++++|+||+||++++|+|+|||||||||||||||||||+||+|||++|||||||||||||||||||++|+|+
T Consensus 1 miPGei~~~~~~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~ 80 (136)
T PRK13201 1 MIPGEIITKSTEVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQ 80 (136)
T ss_pred CCCceEecCCCCeEeCCCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEeccCCccCCCCCccc
Q 004611 211 LISIGGRKVIRGGNGIVDGPTDDAG 235 (742)
Q Consensus 211 l~~~~g~~~~~g~~~~~~~~~~~~~ 235 (742)
||+|||.|+|+|||||++|++|..+
T Consensus 81 LV~igG~r~V~Gfnglv~G~ld~~~ 105 (136)
T PRK13201 81 LVEYAGKRKIFGFRGMVNGPIDESR 105 (136)
T ss_pred EEEccCceEEEccCccccCccCHhh
Confidence 9999999999999999999998754
No 21
>COG0831 UreA Urea amidohydrolase (urease) gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-54 Score=364.32 Aligned_cols=100 Identities=58% Similarity=0.892 Sum_probs=99.2
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHccccccCCCcCCChhhcccc
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~~~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|+|||||+|||+||+||+||+||++||||||||||+||||++++|+|||| +||||||+.|+++|++||||+|||+||++
T Consensus 1 M~ltprE~dKLli~~a~~lA~rR~~RGlKLNypEAvAlIs~~i~EgaRdG-ktVaelM~~g~~vL~~ddVmeGV~emi~~ 79 (100)
T COG0831 1 MHLTPREKDKLLIFTAAELARRRKARGLKLNYPEAVALISAFILEGARDG-KTVAELMSEGRHVLTRDDVMEGVPEMIHE 79 (100)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHHHHHHHhhhcC-CcHHHHHHhhhhhCCHHHHhhcHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred eeeeeecCCCceeEEeecCcc
Q 004611 81 VQVEGTFPDGTKLITIHDPIA 101 (742)
Q Consensus 81 ~~ve~~f~~g~~l~~~~~p~~ 101 (742)
|||||||||||||||||+||+
T Consensus 80 iqVEAtFpDGtkLVTvH~PI~ 100 (100)
T COG0831 80 IQVEATFPDGTKLVTVHNPIR 100 (100)
T ss_pred heeEEEcCCCCEEEEeeCCCC
Confidence 999999999999999999995
No 22
>TIGR00193 urease_gam urease, gamma subunit. Nomenclature for the various subunits of urease in Helicobacter differs from nomenclature in most other species.
Probab=100.00 E-value=2e-53 Score=369.74 Aligned_cols=101 Identities=55% Similarity=0.849 Sum_probs=99.9
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHccccccCCCcCCChhhcccc
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~~~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|||||||+|||+||+||+|||||++||+|||||||+||||++++|+|||| +||||||+.|+++|++||||||||+||++
T Consensus 1 M~LtPrE~ekL~i~~a~~lA~rR~~rGlkLN~pEAvAlIs~~v~E~aRdG-~svaelm~~g~~~L~~~dVm~GV~~mi~~ 79 (102)
T TIGR00193 1 MKLTPKEQDKLMLFYAGELAKKRKARGVKLNYPEAVAYISAHIMEGARDG-KKVAELMQYGRTLLTPDDVMEGVAEMLHE 79 (102)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHhhCCHHhcccCHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred eeeeeecCCCceeEEeecCccC
Q 004611 81 VQVEGTFPDGTKLITIHDPIAS 102 (742)
Q Consensus 81 ~~ve~~f~~g~~l~~~~~p~~~ 102 (742)
||||+||||||||||||+||+.
T Consensus 80 vqVEatFpDGTKLVTvh~PI~~ 101 (102)
T TIGR00193 80 VQIEATFPDGTKLVTVHTPIRA 101 (102)
T ss_pred eeEEEEcCCCCEEEEeCCCCCC
Confidence 9999999999999999999974
No 23
>PRK13205 ureB urease subunit beta; Reviewed
Probab=100.00 E-value=2.5e-53 Score=392.37 Aligned_cols=105 Identities=49% Similarity=0.924 Sum_probs=102.9
Q ss_pred CCCCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEE
Q 004611 131 NVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 131 ~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
|+||||++++++|+||+||++++|+|+|||||||||||||||||||+||+|||++|||||||||||||||||||++|+|+
T Consensus 1 miPGei~~~~g~IelN~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~ 80 (162)
T PRK13205 1 MIPGEYILSSESLTGNVGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVN 80 (162)
T ss_pred CCCceEecCCCCeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEeccCCccCCCCCccc
Q 004611 211 LISIGGRKVIRGGNGIVDGPTDDAG 235 (742)
Q Consensus 211 l~~~~g~~~~~g~~~~~~~~~~~~~ 235 (742)
||+|||.|+|+|||||++|++|..+
T Consensus 81 LV~igG~R~V~Gfnglv~G~ld~~~ 105 (162)
T PRK13205 81 LVAIGGDRIVAGFRDLVDGPLEDLK 105 (162)
T ss_pred EEEccCceEEEccCccccCccCcce
Confidence 9999999999999999999999754
No 24
>PRK13242 ureA urease subunit gamma; Provisional
Probab=100.00 E-value=3e-53 Score=366.66 Aligned_cols=100 Identities=45% Similarity=0.721 Sum_probs=99.0
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHccccccCCCcCCChhhcccc
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~~~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|||||||+|||+||+||+|||||++||+|||||||+||||++++|+|||| +||||||+.|+++|++||||||||+||++
T Consensus 1 M~LtprE~ekL~i~~a~~lA~~R~~rGlkLN~pEAvAlIs~~i~E~aRdG-~svaelm~~g~~vL~~~dVm~GV~~mi~~ 79 (100)
T PRK13242 1 MHLTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVLDGAREG-KTVEEVMDGARSVLKADDVMDGVPDLLPL 79 (100)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHhhCCHHhcccCHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred eeeeeecCCCceeEEeecCcc
Q 004611 81 VQVEGTFPDGTKLITIHDPIA 101 (742)
Q Consensus 81 ~~ve~~f~~g~~l~~~~~p~~ 101 (742)
||||+||||||||||||+||.
T Consensus 80 vqVEatFpDGTkLVTvh~PI~ 100 (100)
T PRK13242 80 IQVEAVFSDGSRLVSLHNPIT 100 (100)
T ss_pred eeEEEEcCCCCEEEEecCCCC
Confidence 999999999999999999994
No 25
>PRK13241 ureA urease subunit gamma; Provisional
Probab=100.00 E-value=1.1e-52 Score=364.67 Aligned_cols=100 Identities=60% Similarity=0.914 Sum_probs=99.2
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHccccccCCCcCCChhhcccc
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~~~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|||||||+|||+||+||+|||||++||+|||||||+||||++++|+|||| +||||||+.|+++|++||||||||+||++
T Consensus 1 M~LtPrE~ekL~i~~a~~lA~~R~~rGlkLN~pEAvAlI~~~v~E~aRdG-~svaelm~~g~~~L~~ddVm~GV~emi~~ 79 (100)
T PRK13241 1 MHLTPREKDKLLIFTAALLAERRKARGLKLNYPEAVALISDALLEGARDG-KTVAELMSYGRTVLTRDDVMEGVPEMIPD 79 (100)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHhhCC-CCHHHHHHHhhhhCCHHhcccCHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred eeeeeecCCCceeEEeecCcc
Q 004611 81 VQVEGTFPDGTKLITIHDPIA 101 (742)
Q Consensus 81 ~~ve~~f~~g~~l~~~~~p~~ 101 (742)
||||+||||||||||||+||+
T Consensus 80 vqVEatFpDGTkLVTvh~PI~ 100 (100)
T PRK13241 80 VQVEATFPDGTKLVTVHDPIR 100 (100)
T ss_pred eeEEEEcCCCCEEEEecCCCC
Confidence 999999999999999999995
No 26
>PF00547 Urease_gamma: Urease, gamma subunit enzyme!; InterPro: IPR002026 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plantseeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta IPR002019 from INTERPRO and gamma, described in this entry). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3QGA_G 3QGK_M 1E9Y_A 1E9Z_A 1FWF_A 1A5L_A 1EJW_A 1EJR_A 1FWH_A 1EJS_A ....
Probab=100.00 E-value=3e-52 Score=361.91 Aligned_cols=99 Identities=65% Similarity=0.994 Sum_probs=88.6
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHccccccCCCcCCChhhcccc
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~~~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|||||||+|||+||+||+|||||++||+|||||||+||||++++|+|||| +||+|||+.|+++||+||||||||+||++
T Consensus 1 M~LtP~E~ekL~i~~a~~lA~~R~~rGlkLN~pEAvAlI~~~v~E~aRdG-~svaelm~~g~~~L~~ddVm~GV~eml~~ 79 (99)
T PF00547_consen 1 MHLTPREQEKLLIFQAAELAQRRLARGLKLNYPEAVALISDEVLEGARDG-KSVAELMSLGRTVLTRDDVMPGVPEMLPE 79 (99)
T ss_dssp --B-HHHHHHHHHHHHHHHHHHHHHTT--B-HHHHHHHHHHHHHHHHHHT-S-HHHHHHHGGGSS-GGGB-TTHHHH-SE
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHhhcCHHHhccCHHHhhce
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred eeeeeecCCCceeEEeecCc
Q 004611 81 VQVEGTFPDGTKLITIHDPI 100 (742)
Q Consensus 81 ~~ve~~f~~g~~l~~~~~p~ 100 (742)
||||+||||||||||||+||
T Consensus 80 vqVEatFpDGtkLVtvh~PI 99 (99)
T PF00547_consen 80 VQVEATFPDGTKLVTVHDPI 99 (99)
T ss_dssp EEEEEEETTEEEEEEEESSC
T ss_pred eeEEEEeCCCCEEEEccCCC
Confidence 99999999999999999998
No 27
>cd00390 Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=100.00 E-value=6.1e-50 Score=345.63 Aligned_cols=96 Identities=66% Similarity=0.968 Sum_probs=95.2
Q ss_pred CccchhhhhHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHccccccCCCcCCChhhcccceee
Q 004611 4 TPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDTVQV 83 (742)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~~~v 83 (742)
||||+|||+||+||+|||||++||+|||||||+||||++++|+|||| +||+|||+.|+++||+||||||||+||++|||
T Consensus 1 tP~E~ekL~i~~a~~lA~~R~~rGlkLN~pEAvAlIs~~v~E~aRdG-~svaelm~~g~~~L~~d~Vm~GV~emi~~vqV 79 (96)
T cd00390 1 TPRELEKLLIFTAAELARKRLARGLKLNYPEAVALIADEILEGARDG-KSVAELMSLGKTVLTRDDVMEGVPEMLHDVQV 79 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHhhcC-CCHHHHHHHHhhhCCHHhcccCHHHhhcceeE
Confidence 79999999999999999999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred eeecCCCceeEEeecCc
Q 004611 84 EGTFPDGTKLITIHDPI 100 (742)
Q Consensus 84 e~~f~~g~~l~~~~~p~ 100 (742)
|+||||||||||||+||
T Consensus 80 EatFpDGTkLVtvh~PI 96 (96)
T cd00390 80 EATFPDGTKLVTVHDPI 96 (96)
T ss_pred EEEeCCCCEEEEccCCC
Confidence 99999999999999998
No 28
>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....
Probab=100.00 E-value=7e-47 Score=336.33 Aligned_cols=121 Identities=66% Similarity=1.123 Sum_probs=95.2
Q ss_pred cccCHHHHHhhhCCCCCCcccccCcccEEEEeccccccccccccCCCccccccccccCCCCCCCcccEEEEecEEEcCCC
Q 004611 269 TVISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHTG 348 (742)
Q Consensus 269 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~e~~~g~gk~~r~~~~~~~~~~~~~~~dlVI~Na~Iid~~g 348 (742)
++|||++||+|||||+||+|||+||+||+|||||||.|||||+|||||++||||+|+++.++++.+|+||+|+.|+|++|
T Consensus 1 m~i~R~~Ya~~yGPT~GD~vRL~DT~L~~evE~D~t~yGdE~~fGGGK~iRdGMgq~~~~~~~~~lD~VItNa~IiD~~G 80 (121)
T PF00449_consen 1 MKISRQQYAEMYGPTTGDRVRLGDTDLWIEVEKDYTVYGDECKFGGGKTIRDGMGQSSGATRDEALDLVITNALIIDYTG 80 (121)
T ss_dssp -EEEHHHHHHHH---TT-EEE-TTSS-EEE--EE-S-TT-----STTSSSSBTTTB-SSSGTTCC-SEEEEEEEEEETTE
T ss_pred CccCHHHHHHHhCCCcCCEEEEecCceEEEEeecccccCceEEecCCeeecCCCCcCCCCCccccccEEEeCcEEEecCC
Confidence 47999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEE
Q 004611 349 IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVI 389 (742)
Q Consensus 349 i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVI 389 (742)
++|+||+||||||++||+++||++||+|+++++++++|++|
T Consensus 81 I~KADIGIkdG~I~gIGkAGNPd~mdgV~p~~viG~~TevI 121 (121)
T PF00449_consen 81 IVKADIGIKDGRIVGIGKAGNPDTMDGVDPNMVIGPSTEVI 121 (121)
T ss_dssp EEEEEEEEETTEEEEEE-EB-TTTSSS-STTCB--TT-EEE
T ss_pred cEEeeEEeeCCEEEEEeccCCccccCCCCCCeEECCCcccC
Confidence 99999999999999999999999999999999999999987
No 29
>PRK07627 dihydroorotase; Provisional
Probab=99.97 E-value=3.8e-30 Score=288.99 Aligned_cols=356 Identities=19% Similarity=0.239 Sum_probs=237.0
Q ss_pred ccEEEEecEEEcCCC--ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch
Q 004611 334 LDTVITNAVIIDHTG--IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ 411 (742)
Q Consensus 334 ~dlVI~Na~Iid~~g--i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~ 411 (742)
||++|+|++|++..+ +.+++|.|+||||++|++...+ ..+.++||++|++|+|||||.|+|+..|.
T Consensus 1 m~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~------------~~~~~~iDa~g~~vlPG~iD~H~H~~~~g 68 (425)
T PRK07627 1 MKIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAG------------FNADKTIDASGLIVCPGLVDLSARLREPG 68 (425)
T ss_pred CeEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcC------------CCCCeEEECCCCEEeccEEeccccccCCC
Confidence 479999999998544 3678999999999999874211 24678999999999999999999997664
Q ss_pred H-HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecC----CCCCCChHHHHHHHHhcCc
Q 004611 412 L-AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTG----KGNSAKPDELHEIIKAGAM 484 (742)
Q Consensus 412 ~-~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~----~g~~~~~~~l~e~i~aGa~ 484 (742)
+ ..+.+..+...++.||++ ....++..........++.+....+. ..+++.+++ ..+......+.++.+.|+.
T Consensus 69 ~~~~e~~~t~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~~~G~~ 148 (425)
T PRK07627 69 YEYKATLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELTEAGCV 148 (425)
T ss_pred ccccCcHHHHHHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHHhCCEE
Confidence 2 345666666666666663 33344433333444444444333332 344443333 1233456778888889999
Q ss_pred eeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCcc-------ch------------------HHHH--HHHHhcCCe
Q 004611 485 GLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNE-------SG------------------FVEH--TIAAFKGRT 537 (742)
Q Consensus 485 glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne-------~g------------------~ve~--~l~a~~g~~ 537 (742)
++|.+.....+...+.++++.+.+.|..+.+|++...- .+ .+.. .++...+.+
T Consensus 149 ~fk~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~ 228 (425)
T PRK07627 149 GFSQANVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGAR 228 (425)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCc
Confidence 99975434567888999999999999999999964210 00 0111 133456889
Q ss_pred EEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHH----hhh----hhhh
Q 004611 538 IHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAF----AES----RIRA 609 (742)
Q Consensus 538 ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~----a~~----Rir~ 609 (742)
+|+.|..... +.+.++.++..++ ++++++ .+|||..+. +++.. ++. |-+.
T Consensus 229 ~hi~HvSs~~---~~~~i~~ak~~g~---------~vt~Ev---------~ph~L~l~~-~~~~~~~~~~k~~PPLR~~~ 286 (425)
T PRK07627 229 VHLARLSSAA---GVALVRAAKAEGL---------PVTCDV---------GVNHVHLID-VDIGYFDSQFRLDPPLRSQR 286 (425)
T ss_pred EEEEeCCCHH---HHHHHHHHHHCCC---------CeEEEe---------ccchheEeH-hHHhccCCceEEeCCCCCHH
Confidence 9999998755 5777887776653 344443 347775542 23221 111 2234
Q ss_pred hhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhh--hccccCCCcccCCCCcHHHHHHHHHHHHHHHcCC
Q 004611 610 ETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKS--QRGSFGPSAADNDNLRIRRYIAKYTINPAIANGF 687 (742)
Q Consensus 610 ~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~--~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl 687 (742)
..-++++.+.+ |.+.+++||+.+.. ..+.....|.....+.. ...++.+......+++++++++++|.|||+++|+
T Consensus 287 d~~~L~~~l~~-G~id~i~SDHaP~~-~~~k~~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~l~~~t~~pA~~lg~ 364 (425)
T PRK07627 287 DREAIRAALAD-GTIDAICSDHTPVD-DDEKLLPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLGL 364 (425)
T ss_pred HHHHHHHHHhc-CCCcEEEcCCCCCC-HHHccCCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCC
Confidence 55678888877 99999999985432 11211123332222211 1222222222456899999999999999999999
Q ss_pred CCCcccccCCCcceEEEECCCC-C---------------------CCCceEEEECCEEEecc
Q 004611 688 SQFVGSVEVGKLADLVLWKPSF-F---------------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 688 ~d~vGSIe~GK~ADLVV~Dp~~-~---------------------~~~p~~Vi~~G~iV~~~ 727 (742)
. .|+|++|+.|||++||++. + ..+|..||++|++||.+
T Consensus 365 ~--~G~l~~G~~ADlvv~d~~~~~~v~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~~ 424 (425)
T PRK07627 365 P--AGRLAEGAPADLCVFDPDAHWRVEPRALKSQGKNTPFLGYELPGRVRATLVAGQVAFER 424 (425)
T ss_pred C--CCcccCCCcCCEEEECCCCcEEEChhhccccCCCCCCcCCEeeeEEEEEEECCEEEeec
Confidence 3 7999999999999999873 1 13789999999999864
No 30
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=99.97 E-value=7.8e-30 Score=288.26 Aligned_cols=358 Identities=23% Similarity=0.297 Sum_probs=229.5
Q ss_pred cEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH-H
Q 004611 335 DTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL-A 413 (742)
Q Consensus 335 dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~-~ 413 (742)
|++|+|++|+|+.++.+++|+|+||||++|++... ...+.++||++|++|+|||||+|+|+..+.. .
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~I~~g~I~~i~~~~~------------~~~~~~~iDa~G~~v~PG~ID~H~H~~~~~~~~ 68 (447)
T cd01315 1 DLVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIA------------NTEAEEVIDAGGLVVMPGLIDTHVHINEPGRTE 68 (447)
T ss_pred CEEEECCEEECCCCceEeEEEEECCEEEEEeCCCC------------CCCCCeEEECCCCEEeccEeeceeccCCCCccc
Confidence 68999999999877888999999999999987521 1246789999999999999999999875432 2
Q ss_pred HHHHHHHHHHHHhCCCC-CCCCC-cccccCCChHHHHHHHHhcCC-CCceEeecCCCCCCChHHHHHHHHhcCceeEecc
Q 004611 414 HDAIASGITTLVGGGTG-PADGT-RATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHE 490 (742)
Q Consensus 414 ~~al~~GvTTl~~gGtg-p~~~~-~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~ 490 (742)
++.+.++....+.+|++ ..+.+ +..+.......++..++.... ..+++++++.......+.++++.+.|+.++|.+.
T Consensus 69 ~e~~~~~s~aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ei~~l~~~G~~giKv~~ 148 (447)
T cd01315 69 WEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPGNLDQLRPLDEAGVVGFKCFL 148 (447)
T ss_pred cccHHHHHHHHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCCCHHHHHHHHHcCCcEEEEEe
Confidence 23333444444444442 11222 112234456777777777654 5678877654334457778888889999999765
Q ss_pred CC-------CCCHHHHHHHHHHHHHcCCEEEEEcCCCc----------------------------cchHHHHH--HHHh
Q 004611 491 DW-------GSTPAAIDNCLTVAEEYDIQVNIHTDTLN----------------------------ESGFVEHT--IAAF 533 (742)
Q Consensus 491 d~-------~~t~~~l~~~l~~A~e~g~~v~iH~dtln----------------------------e~g~ve~~--l~a~ 533 (742)
.. ..+.+.+.++++.|+++|.++.+|++... |...+... +...
T Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~ 228 (447)
T cd01315 149 CPSGVDEFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKE 228 (447)
T ss_pred cccCCCCcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 32 25788999999999999999999996421 01111111 2233
Q ss_pred cCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhh--------h
Q 004611 534 KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAE--------S 605 (742)
Q Consensus 534 ~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~--------~ 605 (742)
.|..+|+.|..... +.+.++.++..+. ++++++ ..||+..+ .+++.... .
T Consensus 229 ~g~~ihi~h~s~~~---~~~~i~~~~~~g~---------~i~~e~---------~~h~l~~~-~~~~~~~~~~~~~~Ppl 286 (447)
T cd01315 229 TGCRLHIVHLSSAE---AVPLIREARAEGV---------DVTVET---------CPHYLTFT-AEDVPDGGTEFKCAPPI 286 (447)
T ss_pred hCCCEEEEeCCCHH---HHHHHHHHHHCCC---------ceEEEe---------ccccEEEc-HHHccCCCCceEECCCC
Confidence 46789999987643 4666666655543 122111 12444322 11111100 0
Q ss_pred hhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhh---hhhhhhhhhhhh--hccccCCCcc-cCCCCcHHHHHHHHHH
Q 004611 606 RIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVI---SRTWQTAHKMKS--QRGSFGPSAA-DNDNLRIRRYIAKYTI 679 (742)
Q Consensus 606 Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i---~~~~~~~~~m~~--~~~~L~~~~~-~~~gl~~~~aL~~aTi 679 (742)
|-.....++++.+.+ |.+.+++||+.+.. ..+.. ...|.....+.. ...++.+... ...+++++++++++|.
T Consensus 287 r~~~~~~~l~~~l~~-g~i~~i~SDh~p~~-~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 364 (447)
T cd01315 287 RDAANQEQLWEALEN-GDIDMVVSDHSPCT-PELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCE 364 (447)
T ss_pred CChHHHHHHHHHHhC-CceeEEeCCCCCCC-HHHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhH
Confidence 222344567777766 99999999985432 11100 011111111100 0001111111 2458999999999999
Q ss_pred HHHHHcCCCCCcccccCCCcceEEEECCCC----------------------CCCCceEEEECCEEEeccC
Q 004611 680 NPAIANGFSQFVGSVEVGKLADLVLWKPSF----------------------FGAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 680 NpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~----------------------~~~~p~~Vi~~G~iV~~~~ 728 (742)
|||+++|+++++|+|++|+.|||||||++. +..+|..||++|+++|.+.
T Consensus 365 ~pa~~~g~~~~~G~l~~g~~Ad~~v~d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~ti~~G~~v~~~~ 435 (447)
T cd01315 365 NPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYYKNKISPYVGRTLKGRVHATILRGTVVYQDG 435 (447)
T ss_pred HHHHHhCCCCCCccccCCCCCCEEEEcCCCCEEEcHHHccccCCCCCccCeEEeeeEEEEEECCEEEEECC
Confidence 999999998778999999999999999764 1226899999999999754
No 31
>PRK06189 allantoinase; Provisional
Probab=99.97 E-value=9.8e-30 Score=288.02 Aligned_cols=358 Identities=21% Similarity=0.235 Sum_probs=241.0
Q ss_pred cccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH
Q 004611 333 SLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL 412 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~ 412 (742)
++|++|+|++|++.++...++|.|+||+|++|++... .++.++||++|++|+|||||+|+|+..|..
T Consensus 2 ~~~~~i~~~~v~~~~~~~~~~v~i~~G~I~~i~~~~~-------------~~~~~~iD~~g~~vlPG~ID~H~H~~~~~~ 68 (451)
T PRK06189 2 MYDLIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEIS-------------SPAREIIDADGLYVFPGMIDVHVHFNEPGR 68 (451)
T ss_pred CccEEEECCEEEcCCCcEEEEEEEECCEEEEecCCCC-------------CCCCeEEECCCCEEecCEEEeeeccCCCCC
Confidence 4789999999999888888999999999999986421 235678999999999999999999976532
Q ss_pred -HHHHHHHHHHHHHhCCCC-CCCCC-cccccCCChHHHHHHHHhcC-CCCceEeecCCCCCCChHHHHHHHHhcCceeEe
Q 004611 413 -AHDAIASGITTLVGGGTG-PADGT-RATTCTPAPSQMKLMLQSTD-DLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKL 488 (742)
Q Consensus 413 -~~~al~~GvTTl~~gGtg-p~~~~-~~~~~t~~~~~i~~~l~a~~-~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl 488 (742)
..+.+.++...++.+|++ ....+ +....+.....+...++..+ ...++|+++........+.+.++.+.|+.++|.
T Consensus 69 ~~~~~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~Gv~~~k~ 148 (451)
T PRK06189 69 THWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVPGNLEHLRELAEAGVIGFKA 148 (451)
T ss_pred CCcccHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEecccccCHHHHHHHHHcCCcEEEE
Confidence 356788888888877763 44444 22234445566666666544 456788877544445577888888899999998
Q ss_pred ccCC-------CCCHHHHHHHHHHHHHcCCEEEEEcCCCcc----------------------------chHHHHH--HH
Q 004611 489 HEDW-------GSTPAAIDNCLTVAEEYDIQVNIHTDTLNE----------------------------SGFVEHT--IA 531 (742)
Q Consensus 489 ~~d~-------~~t~~~l~~~l~~A~e~g~~v~iH~dtlne----------------------------~g~ve~~--l~ 531 (742)
+.+. ..+...+.++++.+.+.+..+.+|++...- ...+... +.
T Consensus 149 f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la 228 (451)
T PRK06189 149 FMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYA 228 (451)
T ss_pred EccccCCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHH
Confidence 7532 246678889999999999999999964220 0001111 23
Q ss_pred HhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhh-------
Q 004611 532 AFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAE------- 604 (742)
Q Consensus 532 a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~------- 604 (742)
...|..+|+.|..... ..++++.++..++ ++++++ ..||+..+. +++....
T Consensus 229 ~~~g~~~hi~HiSt~~---~~~~i~~~k~~g~---------~vt~ev---------~ph~L~l~~-~~~~~~~~~~~~~P 286 (451)
T PRK06189 229 QETGCPLHFVHISSGK---AVALIAEAKKRGV---------DVSVET---------CPHYLLFTE-EDFERIGAVAKCAP 286 (451)
T ss_pred HHhCCCEEEEECCCHH---HHHHHHHHHHCCC---------cEEEEe---------CHHHhhcCH-hHhhCcCCceEEeC
Confidence 3457889999998755 4677776666553 233322 235554332 2221111
Q ss_pred -hhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhh-hhhhhhhhhhh--hhccccCCCcc-cCCCCcHHHHHHHHHH
Q 004611 605 -SRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVI-SRTWQTAHKMK--SQRGSFGPSAA-DNDNLRIRRYIAKYTI 679 (742)
Q Consensus 605 -~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i-~~~~~~~~~m~--~~~~~L~~~~~-~~~gl~~~~aL~~aTi 679 (742)
.|......++++.|.+ |.+++++||+.+... .+.. ...|..+..+. +...++.+... ...+++++++++++|.
T Consensus 287 plr~~~~~~~L~~~l~~-G~i~~i~sDh~p~~~-~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~ 364 (451)
T PRK06189 287 PLRSRSQKEELWRGLLA-GEIDMISSDHSPCPP-ELKEGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLAT 364 (451)
T ss_pred CCCChhhHHHHHHHHhC-CCceEEECCCCCCCH-HHcCcCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhh
Confidence 1223345677888877 999999999865421 1100 11222111111 11122222221 3457999999999999
Q ss_pred HHHHHcCCCCCcccccCCCcceEEEECCCC-----------------C-----CCCceEEEECCEEEeccC
Q 004611 680 NPAIANGFSQFVGSVEVGKLADLVLWKPSF-----------------F-----GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 680 NpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~-----------------~-----~~~p~~Vi~~G~iV~~~~ 728 (742)
|||+++|++ .+|+|++|+.|||||||++. | ..+|..||++|+++|.+.
T Consensus 365 npA~~lgl~-~~G~l~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~tiv~G~~v~~~g 434 (451)
T PRK06189 365 NPAKRFGLP-QKGRLEVGADADFVLVDLDETYTLTKEDLFYRHKQSPYEGRTFPGRVVATYLRGQCVYQDG 434 (451)
T ss_pred hHHHHhCCC-CCCcccCCCcCCEEEEcCCCCEEECHHHhhhcCCCCCcCCcEEEeEEEEEEECCEEEEECC
Confidence 999999995 47999999999999999852 1 126899999999999753
No 32
>PLN02942 dihydropyrimidinase
Probab=99.97 E-value=1.1e-29 Score=290.01 Aligned_cols=357 Identities=16% Similarity=0.192 Sum_probs=235.4
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc---
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP--- 410 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P--- 410 (742)
-|++|+|++|++.++...++|.|+||+|++|++... ....+++||++|++|+|||||+|+|+..+
T Consensus 5 ~~lli~~~~v~~~~~~~~~~i~I~~g~I~~i~~~~~------------~~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~ 72 (486)
T PLN02942 5 TKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLK------------VPDDVRVIDATGKFVMPGGIDPHTHLAMPFMG 72 (486)
T ss_pred CcEEEECcEEEcCCCCeEeEEEEECCEEEEEcCCCC------------CCCCCeEEECCCCEEecCEeeeeeccCcccCC
Confidence 489999999999766677899999999999987421 12356899999999999999999999766
Q ss_pred hHHHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCCC---ChHHHHHHH-HhcCce
Q 004611 411 QLAHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSA---KPDELHEII-KAGAMG 485 (742)
Q Consensus 411 ~~~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~---~~~~l~e~i-~aGa~g 485 (742)
....+.+.+|+..++.||++ ..+.+... .......++.+.+......++|+++...... ..+.+.++. +.|+.+
T Consensus 73 ~~~~ed~~s~s~aAl~gGvTTv~D~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~ 151 (486)
T PLN02942 73 TETIDDFFSGQAAALAGGTTMHIDFVIPV-NGNLLAGYEAYEKKAEKSCMDYGFHMAITKWDDTVSRDMETLVKEKGINS 151 (486)
T ss_pred CcccchHHHHHHHHHcCCCeEEEeCCCCC-CCCHHHHHHHHHHHHhhcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCce
Confidence 23467777888888888874 33332221 2223455555555555667888776432211 134555654 357778
Q ss_pred eEeccCC----CCCHHHHHHHHHHHHHcCCEEEEEcCCCccchH----------------------------HHHH--HH
Q 004611 486 LKLHEDW----GSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGF----------------------------VEHT--IA 531 (742)
Q Consensus 486 lkl~~d~----~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~----------------------------ve~~--l~ 531 (742)
++++..| ..+++.+.++++.|++++..+++|+++..+... ++.. +.
T Consensus 152 ~k~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la 231 (486)
T PLN02942 152 FKFFMAYKGSLMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLA 231 (486)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHH
Confidence 8876544 467899999999999999999999975322110 1111 22
Q ss_pred HhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH--------Hh
Q 004611 532 AFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA--------FA 603 (742)
Q Consensus 532 a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia--------~a 603 (742)
...+..+|+.|+.... +.+.|+.++..++ ++++++ ..||+..+. +++. .+
T Consensus 232 ~~~g~~~~i~H~s~~~---~~e~i~~~k~~G~---------~Vt~e~---------~ph~L~l~~-~~~~~~~~~~~~~~ 289 (486)
T PLN02942 232 KFVNTPLYVVHVMSID---AMEEIARARKSGQ---------RVIGEP---------VVSGLVLDD-SKLWDPDFTIASKY 289 (486)
T ss_pred HHhCCCEEEEECCCHH---HHHHHHHHHHCCC---------cEEEEE---------CchhheeCH-HHhcCcccccCcce
Confidence 3446779999998764 3477777777664 233332 236665432 1110 11
Q ss_pred h----hhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhh---hhhhhhhhhhh--hhccccCCCcc-cCCCCcHHHH
Q 004611 604 E----SRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVI---SRTWQTAHKMK--SQRGSFGPSAA-DNDNLRIRRY 673 (742)
Q Consensus 604 ~----~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i---~~~~~~~~~m~--~~~~~L~~~~~-~~~gl~~~~a 673 (742)
+ -|......++++.+.+ |++++++||+.+... .+.. ...|.....+. +...++.+... ....+++.++
T Consensus 290 k~~PPlr~~~~~~~L~~~l~~-G~i~~igTDh~p~~~-~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~ 367 (486)
T PLN02942 290 VMSPPIRPAGHGKALQAALSS-GILQLVGTDHCPFNS-TQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDY 367 (486)
T ss_pred EECCCCCCHHHHHHHHHHhcC-CceEEEECCCCCCCh-HHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHH
Confidence 1 1222334467777766 999999999865431 1111 01122111111 11111111111 2346999999
Q ss_pred HHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC----------------------CCCceEEEECCEEEecc
Q 004611 674 IAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF----------------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 674 L~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~----------------------~~~p~~Vi~~G~iV~~~ 727 (742)
++++|.|||+++|+++++|+|++|+.||||++|++.. ..+|..||++|++||.+
T Consensus 368 l~~~t~~pA~~lgl~~~~G~l~~G~~ADlv~vd~~~~~~v~~~~~~s~~~~~py~g~~l~g~v~~tiv~G~~v~~~ 443 (486)
T PLN02942 368 VRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAKTHHSRIDTNVYEGRRGKGKVEVTISQGRVVWEN 443 (486)
T ss_pred HHHHHHHHHHHhCCCCCCCCcCCCCcCCEEEEcCCccEEEcHHHccccCCCCCccCcEeeeeEEEEEECCEEEEEC
Confidence 9999999999999987789999999999999997641 23799999999999975
No 33
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=99.97 E-value=8.6e-30 Score=284.45 Aligned_cols=356 Identities=23% Similarity=0.325 Sum_probs=260.3
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH-
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL- 412 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~- 412 (742)
++++|+|+++++++....+||.|+||+|++|++...+ ..+.++||+.|++|+||+||.|+|+..|.+
T Consensus 1 ~~~lIk~~~iv~~~~~~~~di~i~~g~I~~Ig~~l~~------------~~~~~iiD~~g~~v~PG~ID~HVH~repg~~ 68 (430)
T COG0044 1 MDLLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEP------------TSGAEIIDAKGLLVLPGLVDLHVHFREPGFE 68 (430)
T ss_pred CcEEEeccEEEcCCCceEecEEEECCEEEEeccCCCC------------CCCCcEEECCCCEEccCeeEEEEecCCCCcc
Confidence 4789999999998667889999999999999986332 168899999999999999999999999975
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcC-CCCceEeecCCCCCCChH--HHHHHHHhcCceeEe
Q 004611 413 AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTD-DLPLNFGFTGKGNSAKPD--ELHEIIKAGAMGLKL 488 (742)
Q Consensus 413 ~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~-~~~vn~g~~~~g~~~~~~--~l~e~i~aGa~glkl 488 (742)
.++.+.+|...++.||++ ..+.++..+.......++..++..+ ...+++.+++........ .+.+... ..|++.
T Consensus 69 ~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~~~~~--~~g~~~ 146 (430)
T COG0044 69 HKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELTERGV--EAGFKG 146 (430)
T ss_pred hhhhHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhhhhhh--ccceEE
Confidence 678899999999999984 6788888887788888888887766 677888877654433322 2222222 456677
Q ss_pred ccCCC---CCHHHHHHHHHHHHHcCCEEEEEcCCCcc--chH-----------------------HHH--HHHHhcCCeE
Q 004611 489 HEDWG---STPAAIDNCLTVAEEYDIQVNIHTDTLNE--SGF-----------------------VEH--TIAAFKGRTI 538 (742)
Q Consensus 489 ~~d~~---~t~~~l~~~l~~A~e~g~~v~iH~dtlne--~g~-----------------------ve~--~l~a~~g~~i 538 (742)
+++.+ .....+.++++++.+.|..+.+|++...- .+. +.. .++...|..+
T Consensus 147 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~v 226 (430)
T COG0044 147 FMDDSTGALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARV 226 (430)
T ss_pred EecCCcCcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcE
Confidence 77664 68899999999999999999999964310 000 111 1344567899
Q ss_pred EEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH---Hhhh----hhhhhh
Q 004611 539 HTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA---FAES----RIRAET 611 (742)
Q Consensus 539 h~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia---~a~~----Rir~~t 611 (742)
|+.|..... +.+.++.++..++ ++|++ ..+||+..+..+... +++. |-+...
T Consensus 227 hi~HiSt~~---sv~li~~ak~~g~---------~vt~E---------vtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr 285 (430)
T COG0044 227 HICHISTKE---SVELIRAAKAEGI---------RVTAE---------VTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDR 285 (430)
T ss_pred EEEEcCCHH---HHHHHHHHhhcCC---------ceEEe---------ecchheEccHhHhhccCcceEECCCCCCHHHH
Confidence 999998765 4677777776653 34444 246888665322222 1222 334566
Q ss_pred hhHHHHHHHCCCeEEEecCCCccCccchh---hhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 612 IAAEDILHDMGAISIISSDSQAMGRIGEV---ISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 612 ~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~---i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
.++++.|.+ |.+.+++||+.+. ...+. +...|.....+ +...++.++......+++.+.++++|.|||+++|+.
T Consensus 286 ~aL~~~l~~-G~ID~iasDHaPh-t~eeK~~~f~~ap~G~~gl-E~~lpl~l~lv~~g~lsl~~~v~~~S~nPA~ifgl~ 362 (430)
T COG0044 286 EALWEALKD-GVIDVIASDHAPH-TLEEKRLPFEEAPSGIPGL-ETALPLLLTLVKKGRLSLERLVELLSTNPARIFGLP 362 (430)
T ss_pred HHHHHHHhC-CCCcEEEcCCCCC-CHHHhccchhhCCCCCccH-HHHHHHHHHHHHcCCcCHHHHHHHHhhCHHHHhCCC
Confidence 788999988 9999999998543 33333 23333322222 233333343225667999999999999999999998
Q ss_pred CCcccccCCCcceEEEECCCC-----------------C-----CCCceEEEECCEEEeccC
Q 004611 689 QFVGSVEVGKLADLVLWKPSF-----------------F-----GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 689 d~vGSIe~GK~ADLVV~Dp~~-----------------~-----~~~p~~Vi~~G~iV~~~~ 728 (742)
. .|.|++|+.|||+|||++. | ...|.+||++|+++|.+.
T Consensus 363 ~-~g~i~~G~~ADl~lvD~~~~~~i~~~~~~sk~~~sPf~G~~~~g~v~~Ti~rG~~v~~~~ 423 (430)
T COG0044 363 P-KGAIEEGADADLVLVDPDEEWTIRAEELYSKAKNSPFEGFELKGRVVATILRGKVVYEDG 423 (430)
T ss_pred C-CCcccCCCccCEEEEcCCCCeEEchhhhccccCCCCcCCCEEeeeEEEEEECCEEEEECC
Confidence 7 7889999999999999873 1 237899999999999764
No 34
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=99.97 E-value=3.9e-29 Score=282.50 Aligned_cols=356 Identities=21% Similarity=0.269 Sum_probs=236.6
Q ss_pred cEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH-H
Q 004611 335 DTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL-A 413 (742)
Q Consensus 335 dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~-~ 413 (742)
|++|+|++|+++++...++|.|+||+|++|++... ..+.++||++|++|+|||||+|+|+..+.. .
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~i~dg~I~~i~~~~~-------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~ 67 (443)
T TIGR03178 1 DLIIRGGRVILPNGEREADVGVKGGKIAAIGPDIL-------------GPAAKIIDAGGLVVFPGVVDTHVHINEPGRTE 67 (443)
T ss_pred CEEEECcEEECCCCceEEEEEEECCEEEEeeCCCC-------------CCCCeEEECCCCEEeccEeccccccCCCCccc
Confidence 68999999999888888999999999999987421 245689999999999999999999976532 3
Q ss_pred HHHHHHHHHHHHhCCCC-CCCCC-cccccCCChHHHHHHHHhcC-CCCceEeecCCCCCCChHHHHHHHHhcCceeEecc
Q 004611 414 HDAIASGITTLVGGGTG-PADGT-RATTCTPAPSQMKLMLQSTD-DLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHE 490 (742)
Q Consensus 414 ~~al~~GvTTl~~gGtg-p~~~~-~~~~~t~~~~~i~~~l~a~~-~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~ 490 (742)
++.+..+...++.+|++ ..+.+ +..........+...++... ...+++++++.......+.+.++.+.|+.++|.+.
T Consensus 68 ~~~~~~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~~~G~~~ik~~~ 147 (443)
T TIGR03178 68 WEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLVPYNLDDLRELDEAGVVGFKAFL 147 (443)
T ss_pred cchHHHHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccCCCCHHHHHHHHHCCCcEEEEEe
Confidence 45677777777777764 33333 22223344556666666554 35678877654444567778888889999999875
Q ss_pred CC-------CCCHHHHHHHHHHHHHcCCEEEEEcCCCccch----------------------------HHHHH--HHHh
Q 004611 491 DW-------GSTPAAIDNCLTVAEEYDIQVNIHTDTLNESG----------------------------FVEHT--IAAF 533 (742)
Q Consensus 491 d~-------~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g----------------------------~ve~~--l~a~ 533 (742)
.. ..+++.+.++++.++++|..+.+|+++..... .+... +...
T Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~ 227 (443)
T TIGR03178 148 SPSGDDEFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKV 227 (443)
T ss_pred cccCCCCcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHH
Confidence 32 46788999999999999999999996532111 01111 1233
Q ss_pred cCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhh--------
Q 004611 534 KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAES-------- 605 (742)
Q Consensus 534 ~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~-------- 605 (742)
.+..+|+.|..... +.+.++.++..++ ++++++ .+||+.... +++.....
T Consensus 228 ~g~~vhi~Hiss~~---~~~~i~~~~~~g~---------~it~e~---------~ph~l~l~~-~~~~~~~~~~~~~Ppl 285 (443)
T TIGR03178 228 TGCRVHVVHLSSAE---AVELITEAKQEGL---------DVTVET---------CPHYLTLTA-EEVPDGGTLAKCAPPI 285 (443)
T ss_pred hCCCEEEEeCCCHH---HHHHHHHHHHCCC---------cEEEEE---------CccceEecH-HHhhCcCcceEEcCCC
Confidence 47889999988644 4677777776553 122221 234443321 12211111
Q ss_pred hhhhhhhhHHHHHHHCCCeEEEecCCCccCccchh-hhhhhhhhhhhh--hhccccCCCcc-cCCCCcHHHHHHHHHHHH
Q 004611 606 RIRAETIAAEDILHDMGAISIISSDSQAMGRIGEV-ISRTWQTAHKMK--SQRGSFGPSAA-DNDNLRIRRYIAKYTINP 681 (742)
Q Consensus 606 Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~-i~~~~~~~~~m~--~~~~~L~~~~~-~~~gl~~~~aL~~aTiNp 681 (742)
|-.....++++.+.+ |.+.+++||+.+.. ..+. ....|..+..+. +...++.+... ...+++++++++++|.||
T Consensus 286 r~~~~~~~l~~~l~~-G~i~~i~SDh~p~~-~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~p 363 (443)
T TIGR03178 286 RDLANQEGLWEALLN-GLIDCVVSDHSPCT-PDLKRAGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNP 363 (443)
T ss_pred CChHHHHHHHHHHHc-CCccEEeCCCCCCC-hHHcCcCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHH
Confidence 112334567777766 99999999986432 1111 111222111111 11111112111 355799999999999999
Q ss_pred HHHcCCCCCcccccCCCcceEEEECCC-CC---------------------CCCceEEEECCEEEeccC
Q 004611 682 AIANGFSQFVGSVEVGKLADLVLWKPS-FF---------------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 682 A~~lGl~d~vGSIe~GK~ADLVV~Dp~-~~---------------------~~~p~~Vi~~G~iV~~~~ 728 (742)
|+++|+. .+|+|++|+.|||||||++ .+ ..+|..||++|++||.+.
T Consensus 364 A~~~g~~-~~G~l~~G~~Ad~vi~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~g 431 (443)
T TIGR03178 364 AKRFGLA-QKGRIAPGKDADFVFVDPDESYTLTPDDLYYRHKVSPYVGRTIGGRVRATYLRGQCIYDDE 431 (443)
T ss_pred HHHcCCC-CCCccCCCCcCCEEEEcCCCcEEEcHHHhhhcCCCCCcCCcEEeeEEEEEEECCEEEEECC
Confidence 9999994 4799999999999999985 32 236899999999999854
No 35
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=99.97 E-value=5e-29 Score=281.90 Aligned_cols=358 Identities=19% Similarity=0.238 Sum_probs=220.1
Q ss_pred EEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc---hH
Q 004611 336 TVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP---QL 412 (742)
Q Consensus 336 lVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P---~~ 412 (742)
++|+|++|++.+++..++|.|+||+|++|++.... ....++||++|++|+|||||+|+|+..+ ..
T Consensus 1 ~li~n~~vv~~~~~~~~~V~I~dg~I~~Ig~~~~~------------~~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~ 68 (454)
T TIGR02033 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGRNLSP------------PDAVEEIDATGKYVMPGGIDVHTHLEMPFGGTV 68 (454)
T ss_pred CEEECcEEEcCCCceEEEEEEECCEEEEecCCCCC------------CCCCcEEECCCCEEecCEecceeccCcccCCCC
Confidence 47999999997777789999999999999874211 1345899999999999999999998654 22
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecCCCCCCChH---H-HHHHHHhcCcee
Q 004611 413 AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKGNSAKPD---E-LHEIIKAGAMGL 486 (742)
Q Consensus 413 ~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g~~~~~~---~-l~e~i~aGa~gl 486 (742)
..+.+..+....+.+|++ ..+..+..........++...+.... ..++++++........+ . +..+.+.|+..+
T Consensus 69 ~~e~~~~~s~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 148 (454)
T TIGR02033 69 TADDFFTGTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSF 148 (454)
T ss_pred CcchHHHHHHHHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEE
Confidence 234444444444455553 22222222112223444444433332 34666766543222222 2 334445787788
Q ss_pred Eecc----CCCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchH-HH---------------------------HH--HHH
Q 004611 487 KLHE----DWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGF-VE---------------------------HT--IAA 532 (742)
Q Consensus 487 kl~~----d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~-ve---------------------------~~--l~a 532 (742)
|.+. .+.++++.+.++++.|++++.++++|+++..+... ++ .. +..
T Consensus 149 k~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~ 228 (454)
T TIGR02033 149 KVFMAYKNLLMVDDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAA 228 (454)
T ss_pred EEEeecCCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHH
Confidence 8764 34689999999999999999999999975332110 00 00 112
Q ss_pred hcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHH-------HHhh-
Q 004611 533 FKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDV-------AFAE- 604 (742)
Q Consensus 533 ~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edi-------a~a~- 604 (742)
..+..+|+.|+.... +.+.++.+++.++ +.+++ ..+||+-.+. +++ ...+
T Consensus 229 ~~~~~~~i~H~s~~~---~~~~i~~~~~~g~---------~vt~e---------~~p~~l~~~~-~~~~~~~~~~~~~~~ 286 (454)
T TIGR02033 229 LANAPLYVVHVSTAS---AVDEIAEAREKGQ---------PVYGE---------TCPQYLLLDD-TIYDKPGFEGAKYVC 286 (454)
T ss_pred HhCCCEEEEECCCHH---HHHHHHHHHHCCC---------eEEEE---------cCchheeecH-HHhcCcccccceeEE
Confidence 446678999988643 3567777776663 11111 1224432221 111 1111
Q ss_pred ---hhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchh---hhhhhhhhhhh--hhhccccCCCcc-cCCCCcHHHHHH
Q 004611 605 ---SRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEV---ISRTWQTAHKM--KSQRGSFGPSAA-DNDNLRIRRYIA 675 (742)
Q Consensus 605 ---~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~---i~~~~~~~~~m--~~~~~~L~~~~~-~~~gl~~~~aL~ 675 (742)
-|.+....+.++.|.+ |+++++|||+.+..-.... -...|..+..+ .+...++.+... ....+++.++++
T Consensus 287 ~pPlr~~~~~~~l~~~l~~-G~i~~igtDh~p~~~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~~~~~~~~~~ 365 (454)
T TIGR02033 287 SPPLREKEDQDALWSALSS-GALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATGRITLEKFVE 365 (454)
T ss_pred CCCCCChhhHHHHHHHhhc-CCeEEEECCCCCCCHHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcCCCCHHHHHH
Confidence 1222334456777766 9999999998654311110 00111111111 022222222221 234689999999
Q ss_pred HHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC----------------------CCCceEEEECCEEEeccC
Q 004611 676 KYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF----------------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 676 ~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~----------------------~~~p~~Vi~~G~iV~~~~ 728 (742)
++|.|||+++|+.+++|+|++|+.|||+|+|++.. ..+|..||++|++||.+.
T Consensus 366 ~~t~~pa~~~gl~~~~G~l~~G~~AD~~i~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~g 440 (454)
T TIGR02033 366 LTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPNRTTVISAETHHDNADYNPFEGFKVQGAVVSVLSRGRVVVEDG 440 (454)
T ss_pred HHhhHHHHHcCCCCCCCccccCCcCCEEEEcCCcCeeechHHhhccCCCCcccCeEEeeeEEEEEECCEEEEECC
Confidence 99999999999977789999999999999997632 237899999999999853
No 36
>PLN02795 allantoinase
Probab=99.97 E-value=6.6e-29 Score=284.39 Aligned_cols=360 Identities=21% Similarity=0.280 Sum_probs=243.8
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH-
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL- 412 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~- 412 (742)
.|++|+|++|+|.+++..++|.|+||+|++|++...+. ...++.++||+.|++|+|||||+|+|+..|..
T Consensus 44 ~~~vi~~~~vv~~~~~~~~~v~i~dG~I~~I~~~~~~~---------~~~~~~~~ida~G~~v~PG~ID~H~H~~~~~~~ 114 (505)
T PLN02795 44 PHFVLYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEAP---------KSQKKPHVLDYGNAVVMPGLIDVHVHLNEPGRT 114 (505)
T ss_pred cceEEECCEEEECCCeEEEEEEEECCEEEEecCccccc---------cccCCCEEEECCCCEEecCEEecccCcCCCCcc
Confidence 59999999999988888899999999999998742210 00135689999999999999999999976542
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCc-ccccCCChHHHHHHHHhcC-CCCceEeecCCCCC---CChHHHHHHHHhcCcee
Q 004611 413 AHDAIASGITTLVGGGTG-PADGTR-ATTCTPAPSQMKLMLQSTD-DLPLNFGFTGKGNS---AKPDELHEIIKAGAMGL 486 (742)
Q Consensus 413 ~~~al~~GvTTl~~gGtg-p~~~~~-~~~~t~~~~~i~~~l~a~~-~~~vn~g~~~~g~~---~~~~~l~e~i~aGa~gl 486 (742)
.++.+..+....+.+|++ ..+.++ ..+.......++..++... ...++++++..... ...+.+.++.+.|+.++
T Consensus 115 ~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~l~~~~~~G~~g~ 194 (505)
T PLN02795 115 EWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASVLEELLDAGALGL 194 (505)
T ss_pred chhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccCcchhHHHHHHHHHHCCCcEE
Confidence 457788888888888874 445552 2334445566666666654 34567776653221 22445666677899899
Q ss_pred EeccC----C---CCCHHHHHHHHHHHHHcCCEEEEEcCCCcc--------------------------chHHHHH--HH
Q 004611 487 KLHED----W---GSTPAAIDNCLTVAEEYDIQVNIHTDTLNE--------------------------SGFVEHT--IA 531 (742)
Q Consensus 487 kl~~d----~---~~t~~~l~~~l~~A~e~g~~v~iH~dtlne--------------------------~g~ve~~--l~ 531 (742)
|.+.. + ..+++.+.++++.|+++|.++++|++...- ...+... +.
T Consensus 195 k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la 274 (505)
T PLN02795 195 KSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVA 274 (505)
T ss_pred EEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHH
Confidence 97642 1 467899999999999999999999975321 0011111 22
Q ss_pred Hhc-------CCeEEEEecccC-CCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH--
Q 004611 532 AFK-------GRTIHTYHSEGA-GGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA-- 601 (742)
Q Consensus 532 a~~-------g~~ih~~H~~ga-ggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia-- 601 (742)
... +..+|+.|.... . ..+.++.++..++ ++++++ .+||+..+. +++.
T Consensus 275 ~~~~~~~~~~g~~lhi~HiSt~~~---~~e~i~~ak~~G~---------~Vt~Ev---------~ph~L~l~~-~~~~~~ 332 (505)
T PLN02795 275 KDTRPGGVAEGAHVHIVHLSDAES---SLELIKEAKAKGD---------SVTVET---------CPHYLAFSA-EEIPDG 332 (505)
T ss_pred HHhhhcccCCCCCEEEEECCChHH---HHHHHHHHHHCCC---------cEEEEe---------ChhhhcccH-HHccCC
Confidence 233 778999999875 3 4788888777664 233332 346765442 2221
Q ss_pred --Hhhh----hhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhh---hhhhhhhhhhh--hhccccCCCcccCCCCcH
Q 004611 602 --FAES----RIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVI---SRTWQTAHKMK--SQRGSFGPSAADNDNLRI 670 (742)
Q Consensus 602 --~a~~----Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i---~~~~~~~~~m~--~~~~~L~~~~~~~~gl~~ 670 (742)
+++. |-.....++++.|.+ |.+.+++||+.+.. ..+.. ...|..+..+. +...++.++...+.++++
T Consensus 333 ~~~~k~~PPLR~~~d~~aL~~al~~-G~Id~i~sDHap~~-~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~~~~l~l 410 (505)
T PLN02795 333 DTRYKCAPPIRDAANRELLWKALLD-GDIDMLSSDHSPSP-PDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTL 410 (505)
T ss_pred CCceEEcCCCCChHHHHHHHHHHhC-CCceEEecCCCCCC-hHHhccCcCCHhhCCCCceeHHHHHHHHHHHHHHcCCCH
Confidence 1111 223456688999987 99999999986543 21111 11232222221 122223332224567999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC---------C---------------CCCceEEEECCEEEec
Q 004611 671 RRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF---------F---------------GAKPEMVIKGGAIAWA 726 (742)
Q Consensus 671 ~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~---------~---------------~~~p~~Vi~~G~iV~~ 726 (742)
+++++++|.|||+++|+ +.+|+|++|+.|||||||++. + ..+|..||++|++||.
T Consensus 411 ~~~v~~~s~~pA~~~gl-~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~~s~~~~~sp~~G~~l~g~v~~tiv~G~~v~~ 489 (505)
T PLN02795 411 EQLARWWSERPAKLAGL-DSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVFL 489 (505)
T ss_pred HHHHHHHHHHHHHHhCC-CCCCccCCCCccCEEEEcCCcceEECcchhhhhcCCCcCCCCCeEEEeEEEEEEECCEEEEE
Confidence 99999999999999999 458999999999999998642 1 1167889999999997
Q ss_pred c
Q 004611 727 N 727 (742)
Q Consensus 727 ~ 727 (742)
+
T Consensus 490 ~ 490 (505)
T PLN02795 490 E 490 (505)
T ss_pred C
Confidence 4
No 37
>PRK13404 dihydropyrimidinase; Provisional
Probab=99.97 E-value=8.2e-29 Score=282.14 Aligned_cols=358 Identities=22% Similarity=0.295 Sum_probs=237.0
Q ss_pred cccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch-
Q 004611 333 SLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ- 411 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~- 411 (742)
.+|++|+|++|+++.+...++|.|+||+|++|++.. +.+.++||++|++|+|||||+|+|+..|.
T Consensus 3 ~~d~~i~~~~v~~~~~~~~~~i~I~dg~I~~i~~~~--------------~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~ 68 (477)
T PRK13404 3 AFDLVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--------------GPGAREIDATGRLVLPGGVDSHCHIDQPSG 68 (477)
T ss_pred CCcEEEECCEEEcCCCceEEEEEEECCEEEEecCCC--------------CCCCeEEECCCCEEecCEEEeEEcCCcccc
Confidence 368999999999987777899999999999998631 23568999999999999999999996542
Q ss_pred ---HHHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhc-CCCCceEeecCCCCC---CCh-HHHHHHHHhc
Q 004611 412 ---LAHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQST-DDLPLNFGFTGKGNS---AKP-DELHEIIKAG 482 (742)
Q Consensus 412 ---~~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~-~~~~vn~g~~~~g~~---~~~-~~l~e~i~aG 482 (742)
...+.+..+...++.+|++ ..+..+..........++...+.. ....++++++..... ... +.+.++.+.|
T Consensus 69 ~~~~~~e~~~~~s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~~~G 148 (477)
T PRK13404 69 DGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALIAQG 148 (477)
T ss_pred CCccccchHHHHHHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHHHcC
Confidence 2356777777777777774 222222122222234444433333 334567776542221 112 4677888899
Q ss_pred CceeEeccC---CCCCHHHHHHHHHHHHHcCCEEEEEcCCCccc----------h-------------H-----HHH--H
Q 004611 483 AMGLKLHED---WGSTPAAIDNCLTVAEEYDIQVNIHTDTLNES----------G-------------F-----VEH--T 529 (742)
Q Consensus 483 a~glkl~~d---~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~----------g-------------~-----ve~--~ 529 (742)
+.++|++.. +..+++.+.++++.|+++|..+.+|++...-. | . +.. .
T Consensus 149 ~~~iKi~~~~~~~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~ 228 (477)
T PRK13404 149 YTSFKVFMTYDDLKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIA 228 (477)
T ss_pred CCEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHH
Confidence 999998854 35688999999999999999999999632110 0 0 111 1
Q ss_pred HHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHH-------
Q 004611 530 IAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAF------- 602 (742)
Q Consensus 530 l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~------- 602 (742)
++...+.++|+.|..... +.+.++.++..++ ++++++ .+||+..+. +++..
T Consensus 229 la~~~g~~~hi~Hvs~~~---~~~~i~~~k~~g~---------~vt~e~---------~ph~L~l~~-~~~~~~~~~g~~ 286 (477)
T PRK13404 229 LAELVDVPILIVHVSGRE---AAEQIRRARGRGL---------KIFAET---------CPQYLFLTA-EDLDRPGMEGAK 286 (477)
T ss_pred HHHHhCCCEEEEECCCHH---HHHHHHHHHHCCC---------eEEEEE---------ChhhhccCH-HHhcCccccCCc
Confidence 334567889999998754 4678877777664 233322 236665442 22211
Q ss_pred hh----hhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchh--------hhhhhhhhhhhh--hhccccCCCcc-cCCC
Q 004611 603 AE----SRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEV--------ISRTWQTAHKMK--SQRGSFGPSAA-DNDN 667 (742)
Q Consensus 603 a~----~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~--------i~~~~~~~~~m~--~~~~~L~~~~~-~~~g 667 (742)
++ .|......++++.|.+ |.+.+++||+.+.. ..+. -...|.....+. +...++.+... ...+
T Consensus 287 ~k~~Pplr~~~d~~aL~~~l~~-G~id~i~sDHap~~-~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ 364 (477)
T PRK13404 287 YICSPPPRDKANQEAIWNGLAD-GTFEVFSSDHAPFR-FDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGR 364 (477)
T ss_pred eEECCCCCChHHHHHHHHHHhC-CCceEEecCCCCCC-cccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 1223455688888887 99999999986543 1111 001222221111 11122222221 2457
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC-----------------C-----CCCceEEEECCEEEe
Q 004611 668 LRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF-----------------F-----GAKPEMVIKGGAIAW 725 (742)
Q Consensus 668 l~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~-----------------~-----~~~p~~Vi~~G~iV~ 725 (742)
++++++++++|.|||+++|+.+.+|+|++|+.||||+||++. | ..+|..||++|++||
T Consensus 365 ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~ADlvivd~~~~~~v~~~~~~~~~~~sp~~g~~~~g~v~~tiv~G~vv~ 444 (477)
T PRK13404 365 ISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNADLHHAADYTPYEGMRVTGWPVTVLSRGRVVV 444 (477)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCceecCCCcCCEEEEcCCccEEEchHHhcccCCCCcccceEEeeeEEEEEECCEEEE
Confidence 999999999999999999996668999999999999999763 1 125789999999999
Q ss_pred ccC
Q 004611 726 ANM 728 (742)
Q Consensus 726 ~~~ 728 (742)
.+.
T Consensus 445 ~~g 447 (477)
T PRK13404 445 EDG 447 (477)
T ss_pred ECC
Confidence 764
No 38
>PRK08323 phenylhydantoinase; Validated
Probab=99.97 E-value=8.1e-29 Score=280.79 Aligned_cols=355 Identities=20% Similarity=0.271 Sum_probs=221.9
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch--
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ-- 411 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~-- 411 (742)
||++|+|++|+|.+++.+++|.|+||||++|++. .+.++||+.|++|+|||||+|+|+..|.
T Consensus 1 ~d~li~n~~v~~~~~~~~~~v~I~~g~I~~i~~~----------------~~~~viD~~g~~v~PGlID~H~H~~~~~~~ 64 (459)
T PRK08323 1 MSTLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----------------LGDEVIDATGKYVMPGGIDPHTHMEMPFGG 64 (459)
T ss_pred CcEEEECCEEEcCCCceEEEEEEECCEEEEEecC----------------CCceEEECCCCEEeccEEeeeeccccccCC
Confidence 4789999999998888889999999999999863 2457899999999999999999986441
Q ss_pred -HHHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHh-cCCCCceEeecCCC---CCCChHHHHHHHHhcCce
Q 004611 412 -LAHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQS-TDDLPLNFGFTGKG---NSAKPDELHEIIKAGAMG 485 (742)
Q Consensus 412 -~~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a-~~~~~vn~g~~~~g---~~~~~~~l~e~i~aGa~g 485 (742)
...+.+..+....+.+|++ ..+..+..........++...+. .....++++++... .....+.++++++.|+.+
T Consensus 65 ~~~~e~~~~~~~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 144 (459)
T PRK08323 65 TVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELVEEGITS 144 (459)
T ss_pred ccccCcHHHHHHHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHHHcCCCE
Confidence 1223333444444444442 11111111111222334433333 23445677765322 112245667777888888
Q ss_pred eEeccC----CCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchH----------------------------HHH--HHH
Q 004611 486 LKLHED----WGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGF----------------------------VEH--TIA 531 (742)
Q Consensus 486 lkl~~d----~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~----------------------------ve~--~l~ 531 (742)
+|.+.. +..+++.+.++++.|+++|..+.+|+++..+... ++. .+.
T Consensus 145 ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a 224 (459)
T PRK08323 145 FKLFMAYKGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLA 224 (459)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHH
Confidence 987654 4678999999999999999999999975332110 001 122
Q ss_pred HhcCCeEEEEecccCCCCCCHHHHHHhhhcCccc-CCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHh-------
Q 004611 532 AFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLP-SSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFA------- 603 (742)
Q Consensus 532 a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlp-sstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a------- 603 (742)
...+..+|+.|..... +.+.++.+++.++-. +.++| ||+..+. +++...
T Consensus 225 ~~~~~~~~i~H~s~~~---~~~~i~~ak~~g~~vt~e~~p-------------------~~l~l~~-~~~~~~~~~~g~~ 281 (459)
T PRK08323 225 ELAGAPLYIVHVSCKE---ALEAIRRARARGQRVFGETCP-------------------QYLLLDE-SEYDGPDWFEGAK 281 (459)
T ss_pred HHhCCCEEEEeCCCHH---HHHHHHHHHHCCCeEEEEcCc-------------------cceeecH-HHhcCCccccccc
Confidence 3457789999988643 456777777766421 12333 2222110 011000
Q ss_pred -----hhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhh---hhhhhhhhhh--hhhccccCCCcc-cCCCCcHHH
Q 004611 604 -----ESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVI---SRTWQTAHKM--KSQRGSFGPSAA-DNDNLRIRR 672 (742)
Q Consensus 604 -----~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i---~~~~~~~~~m--~~~~~~L~~~~~-~~~gl~~~~ 672 (742)
.-|-+....++++.|.+ |++++++||+.+.....+.+ ...|..+..+ .+.+.++.+... ....+++++
T Consensus 282 ~k~~pPlr~~~~~~~l~~~l~~-G~i~~i~sDh~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~ 360 (459)
T PRK08323 282 YVMSPPLRDKEHQDALWRGLQD-GDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNR 360 (459)
T ss_pred eEECCCCCChHHHHHHHHHhhc-CCeeEEECCCCCCChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHH
Confidence 01112234467777776 99999999986543111110 0111111111 011122222111 245699999
Q ss_pred HHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC-----------------C-----CCCceEEEECCEEEeccC
Q 004611 673 YIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF-----------------F-----GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 673 aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~-----------------~-----~~~p~~Vi~~G~iV~~~~ 728 (742)
+++++|.|||+++|+.+++|+|++|+.|||||+|++. + ..+|..||++|+++|.+.
T Consensus 361 ~~~~~t~~pA~~lgl~~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~s~~~g~~~~g~v~~viv~G~~v~~~g 438 (459)
T PRK08323 361 FVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISASTLHSNVDYNPYEGFEVTGWPVTTLSRGEVVVEDG 438 (459)
T ss_pred HHHHHhhHHHHHhCCCCCCcccCCCCcCCEEEEcCCcccccCHHHHhhcCCCCcccCcEEeeeEEEEEECCEEEEECC
Confidence 9999999999999996668999999999999999872 2 236789999999999863
No 39
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=99.97 E-value=1.1e-28 Score=278.94 Aligned_cols=356 Identities=23% Similarity=0.261 Sum_probs=221.3
Q ss_pred EEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch---H
Q 004611 336 TVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ---L 412 (742)
Q Consensus 336 lVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~---~ 412 (742)
++|+|++|++.+++.+++|.|+||||++|++.... ..+.++||++|++|+|||||+|+|+..+. .
T Consensus 1 lli~~~~v~~~~~~~~~~i~I~~g~I~~ig~~~~~------------~~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~ 68 (447)
T cd01314 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEA------------PGGVEVIDATGKYVLPGGIDPHTHLELPFMGTV 68 (447)
T ss_pred CEEECCEEECCCCceeeeEEEECCEEEEeeCCCCC------------CCCceEEECCCCEEecCEEeccccccccccCcc
Confidence 47999999998778889999999999999874211 12468999999999999999999986432 2
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhc-CCCCceEeecCCCCC---CChHHHHHHHHhcCceeE
Q 004611 413 AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQST-DDLPLNFGFTGKGNS---AKPDELHEIIKAGAMGLK 487 (742)
Q Consensus 413 ~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~-~~~~vn~g~~~~g~~---~~~~~l~e~i~aGa~glk 487 (742)
..+.+..+....+.+|++ ..+..+..........++...+.. ....++++++..... ...+.++++++.|+.++|
T Consensus 69 ~~e~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~g~~~ik 148 (447)
T cd01314 69 TADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELVKKGISSFK 148 (447)
T ss_pred CcchHHHHHHHHHhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHHHcCCCEEE
Confidence 234445555555555553 222222111122334444443332 234456665433221 224456666777888888
Q ss_pred ecc----CCCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHH------------------------------HHHHHh
Q 004611 488 LHE----DWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVE------------------------------HTIAAF 533 (742)
Q Consensus 488 l~~----d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve------------------------------~~l~a~ 533 (742)
.+. .+.++++.+.++++.|++++..+++|+++..+..... ..+...
T Consensus 149 ~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~ 228 (447)
T cd01314 149 VFMAYKGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAEL 228 (447)
T ss_pred EEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHH
Confidence 653 3467999999999999999999999997543211110 012334
Q ss_pred cCCeEEEEecccCCCCCCHHHHHHhhhcCccc-CCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH-------Hh--
Q 004611 534 KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLP-SSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA-------FA-- 603 (742)
Q Consensus 534 ~g~~ih~~H~~gaggghapdiI~~a~~~~vlp-sstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia-------~a-- 603 (742)
.+..+|+.|..... +.+.++.+++.++.. ..++ +||+.... +++. .+
T Consensus 229 ~~~~~~~~H~s~~~---~~~~i~~~k~~g~~v~~~~~-------------------ph~l~~~~-~~~~~~~~~g~~~~~ 285 (447)
T cd01314 229 AGAPLYIVHVSSKE---AADEIARARKKGLPVYGETC-------------------PQYLLLDD-SDYWKDWFEGAKYVC 285 (447)
T ss_pred hCCCEEEEeCCCHH---HHHHHHHHHHCCCeEEEecC-------------------chhheeCH-HHhccccccccceEE
Confidence 56788999987543 345677766665421 1222 23332221 1110 00
Q ss_pred --hhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhh--hhhhhhhhhh--hhccccCCCcc-cCCCCcHHHHHHH
Q 004611 604 --ESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVIS--RTWQTAHKMK--SQRGSFGPSAA-DNDNLRIRRYIAK 676 (742)
Q Consensus 604 --~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~--~~~~~~~~m~--~~~~~L~~~~~-~~~gl~~~~aL~~ 676 (742)
..|.+....+.++.+.+ |+++++|||+.+......... ..|+.+..+. +.+.++.+... ....+++++++++
T Consensus 286 ~pplr~~~~~~~l~~~l~~-G~i~~igsDh~~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~ 364 (447)
T cd01314 286 SPPLRPKEDQEALWDGLSS-GTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVEL 364 (447)
T ss_pred CCCCCChHHHHHHHHHHhC-CCeeEEECCCCCCCHHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHH
Confidence 01222334466777765 999999999865432111110 1222111111 11222222221 2446999999999
Q ss_pred HHHHHHHHcCCCCCcccccCCCcceEEEECCCCC----------------------CCCceEEEECCEEEecc
Q 004611 677 YTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF----------------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 677 aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~----------------------~~~p~~Vi~~G~iV~~~ 727 (742)
+|.|||+++|+.+++|+|++|+.|||||||++.. ..+|..||++|++||.+
T Consensus 365 ~t~~pA~~~gl~~~~G~l~~G~~AD~vi~d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~t~v~G~~v~~~ 437 (447)
T cd01314 365 TSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTHHHNVDYNIFEGMKVKGWPVVTISRGKVVVED 437 (447)
T ss_pred HhhHHHHHhCCCCCCCccCCCCcCCEEEEeCCcCEEecHHHhhccCCCCcccCeEEeeeEEEEEECCEEEEEC
Confidence 9999999999977799999999999999997641 13789999999999975
No 40
>PRK09357 pyrC dihydroorotase; Validated
Probab=99.97 E-value=1.2e-28 Score=276.86 Aligned_cols=355 Identities=23% Similarity=0.311 Sum_probs=231.8
Q ss_pred ccEEEEecEEEcCCC-ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch-
Q 004611 334 LDTVITNAVIIDHTG-IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ- 411 (742)
Q Consensus 334 ~dlVI~Na~Iid~~g-i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~- 411 (742)
|+++|+|++|+++.+ +..++|.|+||+|.+|++... .++.++||++|++|+|||||+|+|+..|.
T Consensus 1 ~~~~i~~~~v~~~~~~~~~~~I~I~dg~I~~i~~~~~-------------~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~ 67 (423)
T PRK09357 1 MMILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-------------AEGAEVIDATGLVVAPGLVDLHVHLREPGQ 67 (423)
T ss_pred CcEEEEeEEEECCCCCcceeeEEEECCEEEEeeCCCC-------------CCCCeEEECCCCEEeCCEEecccccCCCCc
Confidence 468999999998644 667999999999999986311 23568999999999999999999986543
Q ss_pred HHHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCCCC-ceEeecCC---C-CCCChHHHHHHHHhcCce
Q 004611 412 LAHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDDLP-LNFGFTGK---G-NSAKPDELHEIIKAGAMG 485 (742)
Q Consensus 412 ~~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~~~-vn~g~~~~---g-~~~~~~~l~e~i~aGa~g 485 (742)
...+.+..+....+.+|++ ..+.++..........++..+++.+..+ .++.+++. + .....+.+.++.+.|+.+
T Consensus 68 ~~~e~~~~~~~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 147 (423)
T PRK09357 68 EDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALKEAGVVA 147 (423)
T ss_pred cccccHHHHHHHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHHhCCcEE
Confidence 2345555565555666653 3333333444455667777777766554 45543321 1 123355666666678888
Q ss_pred eEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCC---c----------------------cchHHHHH--HHHhcCCeE
Q 004611 486 LKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTL---N----------------------ESGFVEHT--IAAFKGRTI 538 (742)
Q Consensus 486 lkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtl---n----------------------e~g~ve~~--l~a~~g~~i 538 (742)
++.+..+.++++.+..+++.|++++.++++|++.. . |.+.+... ++...+..+
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~ 227 (423)
T PRK09357 148 FSDDGIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARV 227 (423)
T ss_pred EECCCcccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcE
Confidence 88887777889999999999999999999999521 0 11111111 233557889
Q ss_pred EEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH----Hhh--hhhh--hh
Q 004611 539 HTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA----FAE--SRIR--AE 610 (742)
Q Consensus 539 h~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia----~a~--~Rir--~~ 610 (742)
|+.|..... ..++++.++..++- .+++ ..+||+..+.. ++. .++ ..+| ..
T Consensus 228 hi~H~s~~~---~~~~i~~a~~~g~~---------v~~e---------~~ph~L~~~~~-~~~~~~~~~k~~Pplr~~~~ 285 (423)
T PRK09357 228 HICHVSTAG---SVELIRWAKALGIK---------VTAE---------VTPHHLLLTDE-DLLTYDPNYKVNPPLRTEED 285 (423)
T ss_pred EEEeCCCHH---HHHHHHHHHHcCCC---------EEEE---------echHHheEcHH-HHhCcCCceEECCCCCCHHH
Confidence 999998754 46777777765531 1111 12355543321 111 111 1122 34
Q ss_pred hhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh--hhccccCCCcc-cCCCCcHHHHHHHHHHHHHHHcCC
Q 004611 611 TIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK--SQRGSFGPSAA-DNDNLRIRRYIAKYTINPAIANGF 687 (742)
Q Consensus 611 t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~--~~~~~L~~~~~-~~~gl~~~~aL~~aTiNpA~~lGl 687 (742)
..++++.+.+ |+++++|||+.+... .+.....|.....+. +...++.+... ....++++++++++|.|||+++|+
T Consensus 286 ~~~l~~~l~~-G~~~~i~sDh~p~~~-~~k~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~ 363 (423)
T PRK09357 286 REALIEGLKD-GTIDAIATDHAPHAR-EEKECEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGL 363 (423)
T ss_pred HHHHHHHHHc-CCCeEEecCCCCCCh-HHccCCHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCC
Confidence 5577777766 999999999875432 111111222221111 11111111111 245799999999999999999999
Q ss_pred CCCcccccCCCcceEEEECCCCC----------------------CCCceEEEECCEEEecc
Q 004611 688 SQFVGSVEVGKLADLVLWKPSFF----------------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 688 ~d~vGSIe~GK~ADLVV~Dp~~~----------------------~~~p~~Vi~~G~iV~~~ 727 (742)
++ |+|++|+.|||+|+|++.. ..+|..||++|++||++
T Consensus 364 ~~--G~i~~G~~AD~~i~d~~~~~~v~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~ 423 (423)
T PRK09357 364 PA--GPLAEGEPADLVIFDPEAEWTVDGEDFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQD 423 (423)
T ss_pred CC--CccCCCCcCCEEEEcCCCCEEEchhhcccCCCCCCCcCCEEeeEEEEEEECCEEEecC
Confidence 75 9999999999999997642 23689999999999964
No 41
>PRK09059 dihydroorotase; Validated
Probab=99.96 E-value=2.6e-28 Score=274.49 Aligned_cols=359 Identities=18% Similarity=0.208 Sum_probs=244.4
Q ss_pred cccEEEEecEEEcCCCc--eeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc
Q 004611 333 SLDTVITNAVIIDHTGI--FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP 410 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~gi--~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P 410 (742)
+.|++|+|++|+++.+. ..++|+|+||+|++|++..... ..+.+.++||+.|++|+|||||+|+|+..|
T Consensus 2 ~~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~---------~~~~~~~viDa~G~~v~PG~ID~HvH~~~~ 72 (429)
T PRK09059 2 MRPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQ---------GAPEGAEIVDCAGKAVAPGLVDARVFVGEP 72 (429)
T ss_pred CcCEEEEeeEEECCCCCcccceEEEEECCEEEEecCccccc---------cCCCCCeEEECCCCEEeccEEecccccCCC
Confidence 35899999999997663 4689999999999998642110 012356899999999999999999999765
Q ss_pred h-HHHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecCCC----CCCChHHHHHHHHhcC
Q 004611 411 Q-LAHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKG----NSAKPDELHEIIKAGA 483 (742)
Q Consensus 411 ~-~~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g----~~~~~~~l~e~i~aGa 483 (742)
. ...+.+..+...++.||++ ....++..+...+...+..+++..+. .+++|++++.. +......+.++.+.|+
T Consensus 73 ~~~~~e~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv 152 (429)
T PRK09059 73 GAEHRETIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLRAAGA 152 (429)
T ss_pred CchhhhhHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHHhcCc
Confidence 4 2457777777888888873 44555555556667777777776654 47888765543 2234566777777888
Q ss_pred ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCc--------cc------------hH-----HHH--HHHHhcCC
Q 004611 484 MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLN--------ES------------GF-----VEH--TIAAFKGR 536 (742)
Q Consensus 484 ~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtln--------e~------------g~-----ve~--~l~a~~g~ 536 (742)
.+++.......+...+.++++.+.+.|..+.+|++... +. .. +.. .+....+.
T Consensus 153 ~~f~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~ 232 (429)
T PRK09059 153 VAFTDGRRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRG 232 (429)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 88874322234566688999999999999999996421 11 00 111 13445678
Q ss_pred eEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH----Hhhh----hhh
Q 004611 537 TIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA----FAES----RIR 608 (742)
Q Consensus 537 ~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia----~a~~----Rir 608 (742)
.+|+.|..... +.+.++.++..++ ++++++ .+|||..+. +++. +++. |-+
T Consensus 233 ~~hi~hvs~~~---~~~~i~~ak~~g~---------~vt~ev---------~phhL~l~~-~~~~~~~~~~kvnPPLR~~ 290 (429)
T PRK09059 233 RYHAAQISCAE---SAEALRRAKDRGL---------KVTAGV---------SINHLSLNE-NDIGEYRTFFKLSPPLRTE 290 (429)
T ss_pred cEEEEecCCHH---HHHHHHHHHHCCC---------CEEEee---------cHHHHhccH-HHHhccCCccEEcCCCCCH
Confidence 89999998755 4777877776654 344432 347775542 2222 1222 334
Q ss_pred hhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh--hhccccCCCcccCCCCcHHHHHHHHHHHHHHHcC
Q 004611 609 AETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK--SQRGSFGPSAADNDNLRIRRYIAKYTINPAIANG 686 (742)
Q Consensus 609 ~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~--~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lG 686 (742)
....++++.|.+ |.+.+++||+.+.. ..+.....|..+..+. +...++.+......++++.++++++|.|||+++|
T Consensus 291 ~d~~~L~~~l~~-g~id~i~sDh~p~~-~~~K~~~~~~~~~G~~gle~~l~~~~~~v~~~~l~l~~~~~~~s~nPA~~~g 368 (429)
T PRK09059 291 DDRVAMVEAVAS-GTIDIIVSSHDPQD-VDTKRLPFSEAAAGAIGLETLLAAALRLYHNGEVPLLRLIEALSTRPAEIFG 368 (429)
T ss_pred HHHHHHHHHHHc-CCCcEEEeCCCCCC-HHHCcCChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhC
Confidence 566789999988 99999999986543 2221112232222211 1112222221135578999999999999999999
Q ss_pred CCCCcccccCCCcceEEEECCCC-----------------C-----CCCceEEEECCEEEec
Q 004611 687 FSQFVGSVEVGKLADLVLWKPSF-----------------F-----GAKPEMVIKGGAIAWA 726 (742)
Q Consensus 687 l~d~vGSIe~GK~ADLVV~Dp~~-----------------~-----~~~p~~Vi~~G~iV~~ 726 (742)
+. .|+|++|+.||||++|++. | ..+|..||++|++||+
T Consensus 369 l~--~G~l~~G~~ADlvl~d~~~~~~v~~~~~~s~~~~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 369 LP--AGTLKPGAPADIIVIDLDEPWVVDPEDLKSRSKNTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred CC--cCcccCCCcCCEEEECCCCCEEECcccCccCCCCCCCCCCEEeeEEEEEEECCEEEee
Confidence 95 5999999999999999753 1 2378999999999985
No 42
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=99.96 E-value=1.5e-28 Score=275.46 Aligned_cols=333 Identities=23% Similarity=0.294 Sum_probs=219.0
Q ss_pred cEEEEecEEEcCCC--ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc--
Q 004611 335 DTVITNAVIIDHTG--IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP-- 410 (742)
Q Consensus 335 dlVI~Na~Iid~~g--i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P-- 410 (742)
|++|+|++|+|+++ ...++|.|+||+|++|++... ..+.++||++|++|+|||||+|+|+..+
T Consensus 1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~-------------~~~~~~iD~~G~~v~PG~iD~H~H~~~~~~ 67 (415)
T cd01297 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILS-------------TSAREVIDAAGLVVAPGFIDVHTHYDGQVF 67 (415)
T ss_pred CEEEECCEEECCCCCccccceEEEECCEEEEEecCCC-------------CCCCeEEECCCCEEccCEeeeeecCCcccc
Confidence 58999999999766 467899999999999987422 1356899999999999999999998653
Q ss_pred --hHHHHHHHHHHHHHHhCCCC--CCCCCccc--c--------------cCCChHHHHHHHHhcC-C-CCceEe---ecC
Q 004611 411 --QLAHDAIASGITTLVGGGTG--PADGTRAT--T--------------CTPAPSQMKLMLQSTD-D-LPLNFG---FTG 465 (742)
Q Consensus 411 --~~~~~al~~GvTTl~~gGtg--p~~~~~~~--~--------------~t~~~~~i~~~l~a~~-~-~~vn~g---~~~ 465 (742)
.....++..|+||++.+.++ |....... . ...++..+...++..+ . ..+|++ +++
T Consensus 68 ~~~~~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 147 (415)
T cd01297 68 WDPDLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHA 147 (415)
T ss_pred cCcchhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcH
Confidence 34677899999999875442 43221100 0 0011233445555442 2 468887 332
Q ss_pred CCC---------CCC---hHHHHHH----HHhcCceeEeccCC----CCCHHHHHHHHHHHHHcCCEEEEEcCCC--ccc
Q 004611 466 KGN---------SAK---PDELHEI----IKAGAMGLKLHEDW----GSTPAAIDNCLTVAEEYDIQVNIHTDTL--NES 523 (742)
Q Consensus 466 ~g~---------~~~---~~~l~e~----i~aGa~glkl~~d~----~~t~~~l~~~l~~A~e~g~~v~iH~dtl--ne~ 523 (742)
... ..+ .+.+.++ .++|+.|++....| ..+.+++.+++++|.++|.++.+|++.. .+.
T Consensus 148 ~l~~~~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~ 227 (415)
T cd01297 148 ALRRAVMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDSIL 227 (415)
T ss_pred HHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHH
Confidence 111 112 3334444 46799999987655 5799999999999999999999999743 232
Q ss_pred hHHHHHHH--HhcCCeEEEEecccCCC---CCC---HHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCC
Q 004611 524 GFVEHTIA--AFKGRTIHTYHSEGAGG---GHA---PDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKD 595 (742)
Q Consensus 524 g~ve~~l~--a~~g~~ih~~H~~gagg---gha---pdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~ 595 (742)
..+++.+. ...+.++|+.|+....+ +.. .+.++.++..++ ++++.+ .+|++..
T Consensus 228 ~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~---------~v~~e~---------~p~~~~~- 288 (415)
T cd01297 228 EALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGL---------QVTADV---------YPYGAGS- 288 (415)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHhCC---------cEEEEe---------CCCCCCc-
Confidence 23444332 33478899999987653 111 355555555443 222221 1233322
Q ss_pred chHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcc--cCCCCcHHHH
Q 004611 596 IPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAA--DNDNLRIRRY 673 (742)
Q Consensus 596 ~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~--~~~gl~~~~a 673 (742)
...+..|.+. .+++++||+.+.. . ...+.+.....+ +... ....++++++
T Consensus 289 ----------------~~~~~~l~~~-~~~~i~SDh~~~~-~--~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~ 340 (415)
T cd01297 289 ----------------EDDVRRIMAH-PVVMGGSDGGALG-K--PHPRSYGDFTRV--------LGHYVRERKLLSLEEA 340 (415)
T ss_pred ----------------HHHHHHHHcC-CCceeeeCCCcCC-C--CCcchhCCHHHH--------HHHHhcccCCCCHHHH
Confidence 2334455564 8999999987632 0 011111111111 1000 1224899999
Q ss_pred HHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCC------------CCceEEEECCEEEeccC
Q 004611 674 IAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFG------------AKPEMVIKGGAIAWANM 728 (742)
Q Consensus 674 L~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~------------~~p~~Vi~~G~iV~~~~ 728 (742)
++++|.|||+++|+++ +|+|++|+.|||||||++.+. ..+.+||++|+++|.+.
T Consensus 341 ~~~~t~~pA~~~gl~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~v~~viv~G~~v~~~~ 406 (415)
T cd01297 341 VRKMTGLPARVFGLAD-RGRIAPGYRADIVVFDPDTLADRATFTRPNQPAEGIEAVLVNGVPVVRDG 406 (415)
T ss_pred HHHHHHHHHHHhCCCC-CceeCCCCCCCEEEEcccccccccchhhhccCCCCceEEEECCEEEEECC
Confidence 9999999999999974 699999999999999987531 25789999999999864
No 43
>PRK08044 allantoinase; Provisional
Probab=99.96 E-value=2.3e-28 Score=276.62 Aligned_cols=356 Identities=19% Similarity=0.222 Sum_probs=243.3
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH-
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL- 412 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~- 412 (742)
+|++|+|++|++.++...++|.|+||+|.+|++.. ..+.++||+.|++++|||||+|+|+..|..
T Consensus 3 ~~~~i~n~~vi~~~~~~~~~i~I~dg~I~~i~~~~--------------~~~~~~iD~~G~~v~Pg~iD~h~h~~~~~~~ 68 (449)
T PRK08044 3 FDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--------------GDAKEVMDASGLVVSPGMVDAHTHISEPGRS 68 (449)
T ss_pred ceEEEECcEEEcCCCCEEEEEEEECCEEEEecCCC--------------CCCCeEEECCCCEEcCCeeccccccCCCCcc
Confidence 68999999999877777799999999999998631 135689999999999999999999976543
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCC-cccccCCChHHHHHHHHhcC-CCCceEeecCCCCCCChHHHHHHHHhcCceeEec
Q 004611 413 AHDAIASGITTLVGGGTG-PADGT-RATTCTPAPSQMKLMLQSTD-DLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLH 489 (742)
Q Consensus 413 ~~~al~~GvTTl~~gGtg-p~~~~-~~~~~t~~~~~i~~~l~a~~-~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~ 489 (742)
..+.+..+...++.+|++ ..+.+ +..+.+...+.++...+..+ ...++|++++........++.++.+.|+.++|.+
T Consensus 69 ~~e~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~~~~ei~~l~~~gv~~fk~~ 148 (449)
T PRK08044 69 HWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNLDRLHELDEVGVVGFKCF 148 (449)
T ss_pred ccccHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCCCHHHHHHHHHcCceEEEEE
Confidence 356777777777777764 34444 33345667788877777654 5568888766544446777888888999999987
Q ss_pred cCC-----------CCCHHHHHHHHHHHHHcCCEEEEEcCCCccc---h-------------------------HHHHH-
Q 004611 490 EDW-----------GSTPAAIDNCLTVAEEYDIQVNIHTDTLNES---G-------------------------FVEHT- 529 (742)
Q Consensus 490 ~d~-----------~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~---g-------------------------~ve~~- 529 (742)
..| ..++..+.++++.+.+.|.++.+|++...-. + .+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~ 228 (449)
T PRK08044 149 VATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVL 228 (449)
T ss_pred ecccCcccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHH
Confidence 432 1356788899999999999999999642110 0 01111
Q ss_pred -HHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhh----
Q 004611 530 -IAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAE---- 604 (742)
Q Consensus 530 -l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~---- 604 (742)
+....|..+|+.|..... ..+.++.++..+. ++++++ ..||+..+. +++....
T Consensus 229 ~lA~~~g~~vhi~HiSt~~---~~~~i~~ak~~G~---------~it~e~---------~~h~L~l~~-~~~~~~~~~~k 286 (449)
T PRK08044 229 YLAKVAGCRLHVCHISSPE---GVEEVTRARQEGQ---------DVTCES---------CPHYFVLDT-DQFEEIGTLAK 286 (449)
T ss_pred HHHHHhCCCEEEEeCCCHH---HHHHHHHHHHCCC---------CEEEEc---------ChhhhcccH-HHhhCCCCcEE
Confidence 223446789999988654 3666666665542 233332 236664432 2221111
Q ss_pred ----hhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhh--ccccCCCcc-cCCCCcHHHHHHHH
Q 004611 605 ----SRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQ--RGSFGPSAA-DNDNLRIRRYIAKY 677 (742)
Q Consensus 605 ----~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~--~~~L~~~~~-~~~gl~~~~aL~~a 677 (742)
.|-....-++++.|.+ |.+.+++||+.+.. ..+.....|..+..+... ..++.+... ...+++++++++++
T Consensus 287 ~~PPlr~~~d~~aL~~~l~~-G~id~i~sDH~P~~-~~~K~~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~ 364 (449)
T PRK08044 287 CSPPIRDLENQKGMWEKLFN-GEIDCLVSDHSPCP-PEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLM 364 (449)
T ss_pred EcCCCCChHHHHHHHHHHhC-CCceEEEcCCCCCC-hHHccCChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1223445678888887 99999999986532 222111233332222211 111112112 35579999999999
Q ss_pred HHHHHHHcCCCCCcccccCCCcceEEEECCCCC----------------------CCCceEEEECCEEEeccC
Q 004611 678 TINPAIANGFSQFVGSVEVGKLADLVLWKPSFF----------------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 678 TiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~----------------------~~~p~~Vi~~G~iV~~~~ 728 (742)
|.|||+++|+++ .|+|++|+.|||++||++.. ..+|..||++|++||.+.
T Consensus 365 s~npA~~lgl~~-~G~i~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t~~~G~~v~~~~ 436 (449)
T PRK08044 365 ATNAADIFGLQQ-KGRIAPGKDADFVFIQPNSSYVLKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIE 436 (449)
T ss_pred HHhHHHHhCCCC-CCcCCCCCccCEEEECCCCcEEECHHHccccCCCCCCCCCEEeeeEEEEEECCEEEEECC
Confidence 999999999954 79999999999999997631 236899999999999853
No 44
>PRK02382 dihydroorotase; Provisional
Probab=99.96 E-value=2e-27 Score=268.67 Aligned_cols=352 Identities=22% Similarity=0.304 Sum_probs=229.7
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH-
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL- 412 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~- 412 (742)
.|++|+|++|++..++.+++|.|+||+|++|++... ...+.++||++|++|+|||||+|+|+..+..
T Consensus 2 ~dl~i~n~~v~~~~~~~~~~v~I~dg~I~~i~~~~~------------~~~~~~~id~~g~~v~PG~ID~H~H~~~~g~~ 69 (443)
T PRK02382 2 RDALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLD------------GSSSEEVIDARGMLLLPGGIDVHVHFREPGYT 69 (443)
T ss_pred ceEEEECCEEEeCCCceEEEEEEECCEEEEecCCCC------------CCCCCeEEECCCCEEcCCEeeeeeeccCCCCC
Confidence 589999999998767788999999999999976321 1234689999999999999999999876532
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcC-CCCceEeecCCCCCCChHHHHHHHHhcCcee-Eec
Q 004611 413 AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTD-DLPLNFGFTGKGNSAKPDELHEIIKAGAMGL-KLH 489 (742)
Q Consensus 413 ~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~-~~~vn~g~~~~g~~~~~~~l~e~i~aGa~gl-kl~ 489 (742)
..+.+.++....+.+|++ ....++..+.+.....+...++... ...+++++++.. ....+.+.++.+.|+.++ |++
T Consensus 70 ~~e~~~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~-~~~~~~l~~l~~~gv~~~gkv~ 148 (443)
T PRK02382 70 HKETWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGINGGV-TGNWDPLESLWERGVFALGEIF 148 (443)
T ss_pred chhhHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEEeee-ccchhhHHHHHhcCccceeEEE
Confidence 345666777777777763 3333344444455566666555544 345777776433 234566777777788877 665
Q ss_pred c-----CCCCCHHHHHHHHHHHHHcCCEEEEEcCCCccc--------------------------hHHHH--HHHHhcCC
Q 004611 490 E-----DWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNES--------------------------GFVEH--TIAAFKGR 536 (742)
Q Consensus 490 ~-----d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~--------------------------g~ve~--~l~a~~g~ 536 (742)
. .+..++..+.++++.+++.+.++.+|++...-. ..+.. .++...|.
T Consensus 149 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~ 228 (443)
T PRK02382 149 MADSTGGMGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGA 228 (443)
T ss_pred EEecCCCcccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCC
Confidence 4 345678899999999999999999999632100 00011 12344678
Q ss_pred eEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHH----hh----hhhh
Q 004611 537 TIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAF----AE----SRIR 608 (742)
Q Consensus 537 ~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~----a~----~Rir 608 (742)
.+|+.|..... +.++++.+ .+ +++ ...||+..+. +++.. ++ -|-.
T Consensus 229 ~~hi~h~ss~~---~~~~i~~~---~v-----------t~e---------v~ph~L~l~~-~~~~~~~~~~k~~PPlr~~ 281 (443)
T PRK02382 229 RIHIAHISTPE---GVDAARRE---GI-----------TCE---------VTPHHLFLSR-RDWERLGTFGKMNPPLRSE 281 (443)
T ss_pred CEEEEECCCHH---HHHHHHHC---Cc-----------EEE---------EchhhhhcCH-HHHhccCceEEEcCCCCCh
Confidence 89999987633 23444432 21 111 1235554332 22211 11 1223
Q ss_pred hhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh--hhccccCCCcccCCCCcHHHHHHHHHHHHHHHcC
Q 004611 609 AETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK--SQRGSFGPSAADNDNLRIRRYIAKYTINPAIANG 686 (742)
Q Consensus 609 ~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~--~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lG 686 (742)
....++++.+.+ |.+.+++||+.+.. ..+.....|..+..+. +...++.+......+++++++++++|.|||+++|
T Consensus 282 ~d~~aL~~~l~~-g~i~~i~sDh~P~~-~~~K~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~l~~~~~~~t~~pA~~~g 359 (443)
T PRK02382 282 KRREALWERLND-GTIDVVASDHAPHT-REEKDADIWDAPSGVPGVETMLPLLLAAVRKNRLPLERVRDVTAANPARIFG 359 (443)
T ss_pred HHHHHHHHHHhC-CCCCEEEcCCCCCC-HHHhcCChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcC
Confidence 445578888877 99999999986543 2221112333222211 1122222221235589999999999999999999
Q ss_pred CCCCcccccCCCcceEEEECCCCC-----------------C----CCceEEEECCEEEeccC
Q 004611 687 FSQFVGSVEVGKLADLVLWKPSFF-----------------G----AKPEMVIKGGAIAWANM 728 (742)
Q Consensus 687 l~d~vGSIe~GK~ADLVV~Dp~~~-----------------~----~~p~~Vi~~G~iV~~~~ 728 (742)
++ ..|+|++|+.|||++||++.. . ..|.+||++|+++|.+.
T Consensus 360 ~~-~~G~l~~G~~AD~vi~d~~~~~~~~~~~~~s~~~~sp~~g~~~~~v~~tiv~G~~v~~~~ 421 (443)
T PRK02382 360 LD-GKGRIAEGYDADLVLVDPDAAREIRGDDLHSKAGWTPFEGMEGVFPELTMVRGTVVWDGD 421 (443)
T ss_pred CC-CCCccCCCCcCCEEEEcCCCcEEEcHHHhcccCCCCCcCCCEeceEEEEEECCEEEEECC
Confidence 96 479999999999999997531 1 25689999999999854
No 45
>PRK09236 dihydroorotase; Reviewed
Probab=99.96 E-value=2.5e-27 Score=267.92 Aligned_cols=355 Identities=20% Similarity=0.232 Sum_probs=216.7
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH-
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL- 412 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~- 412 (742)
.+++|+|++|+|..++..++|.|+||+|++|++...+ .++.++||++|++|+|||||+|+|+..|..
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~------------~~~~~~id~~g~~v~PG~ID~HvH~~~~~~~ 69 (444)
T PRK09236 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISA------------KSADTVIDAAGRYLLPGMIDDQVHFREPGLT 69 (444)
T ss_pred ccEEEECCEEEcCCCceEeEEEEECCEEEEecCCCCC------------CCCCeEEECCCCEECCCEEEcccccccCccc
Confidence 5789999999997777789999999999999864211 245689999999999999999999976542
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcC-CCCceEeecCCCCCCChHHHHHHHHhcCceeEecc
Q 004611 413 AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTD-DLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHE 490 (742)
Q Consensus 413 ~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~-~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~ 490 (742)
..+.+..+....+.+|++ ..+.++..+.......+....+..+ ...++++++......+.+++.++.+.|+.|+|.+.
T Consensus 70 ~~e~~~~~~~aa~~~GvTtv~d~p~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~e~~~l~~~g~~g~k~~~ 149 (444)
T PRK09236 70 HKGDIASESRAAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSLANYSFYFGATNDNLDEIKRLDPKRVCGVKVFM 149 (444)
T ss_pred ccccHHHHHHHHHhCCcEEEEeCCCCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccCcccHHHHHHHHHccCcEEEEEe
Confidence 223444555555555542 2233333333445556665555443 45678888764434456777777778999999885
Q ss_pred CC-----CCC-HHHHHHHHHHHHHcCCEEEEEcCCCc-----cc------h--------------H-----HHH--HHHH
Q 004611 491 DW-----GST-PAAIDNCLTVAEEYDIQVNIHTDTLN-----ES------G--------------F-----VEH--TIAA 532 (742)
Q Consensus 491 d~-----~~t-~~~l~~~l~~A~e~g~~v~iH~dtln-----e~------g--------------~-----ve~--~l~a 532 (742)
.. ... ...+..+ .++.+..+.+|++... +. | . +.. .+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~---~~~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~ 226 (444)
T PRK09236 150 GASTGNMLVDNPETLERI---FRDAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAK 226 (444)
T ss_pred ccCCCCcccCcHHHHHHH---HHhcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHH
Confidence 32 122 2344444 4566899999996310 00 0 0 000 1222
Q ss_pred hcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhh-------
Q 004611 533 FKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAES------- 605 (742)
Q Consensus 533 ~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~------- 605 (742)
..+..+|+.|.+... +.+.++.+...+. ++++. ...||+..+. +++.....
T Consensus 227 ~~~~~~hi~h~st~~---~~~~i~~~~~~g~---------~vt~e---------~~~H~l~l~~-~~~~~~~~~~~~~Pp 284 (444)
T PRK09236 227 KHGTRLHVLHISTAK---ELSLFENGPLAEK---------RITAE---------VCVHHLWFDD-SDYARLGNLIKCNPA 284 (444)
T ss_pred HHCCCEEEEeCCCHH---HHHHHHHHHHCCC---------CEEEE---------EchhhhhcCH-HHHhccCceEEECCC
Confidence 346678888887533 2444444332221 12221 1246665442 22221111
Q ss_pred -hhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh--hhccccCCCcccCCCCcHHHHHHHHHHHHH
Q 004611 606 -RIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK--SQRGSFGPSAADNDNLRIRRYIAKYTINPA 682 (742)
Q Consensus 606 -Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~--~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA 682 (742)
|......+.++.+.+ |++++++||+.+.. ..+.....|.....+. +...++.+......+++++++++++|.|||
T Consensus 285 lr~~~~~~~l~~~l~~-G~i~~igtDh~p~~-~~~k~~~~~~~~~G~~~~e~~l~~l~~~v~~~~~~~~~~~~~~t~~pA 362 (444)
T PRK09236 285 IKTASDREALRQALAD-DRIDVIATDHAPHT-WEEKQGPYFQAPSGLPLVQHALPALLELVHEGKLSLEKVVEKTSHAPA 362 (444)
T ss_pred CCCHHHHHHHHHHHhC-CCCcEEECCCCCCC-HHHhcCCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHhHH
Confidence 223344567777766 99999999986431 1111101111111100 001111111112457999999999999999
Q ss_pred HHcCCCCCcccccCCCcceEEEECCCCC----------------------CCCceEEEECCEEEeccC
Q 004611 683 IANGFSQFVGSVEVGKLADLVLWKPSFF----------------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 683 ~~lGl~d~vGSIe~GK~ADLVV~Dp~~~----------------------~~~p~~Vi~~G~iV~~~~ 728 (742)
+++|+.+ .|+|++|+.|||+|||++.. ..+|..||++|++||.+.
T Consensus 363 ~~lgl~~-~G~l~~G~~ADlvi~d~~~~~~~~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~~g 429 (444)
T PRK09236 363 ILFDIKE-RGFIREGYWADLVLVDLNSPWTVTKENILYKCGWSPFEGRTFRSRVATTFVNGQLVYHNG 429 (444)
T ss_pred HhcCCCC-CCccccCCcCCEEEEcCCCCEEEchHHhcccCCCCCCCCCEEeeeEEEEEECCEEEEECC
Confidence 9999964 79999999999999997631 226899999999999853
No 46
>PRK07369 dihydroorotase; Provisional
Probab=99.95 E-value=3e-27 Score=265.01 Aligned_cols=337 Identities=19% Similarity=0.207 Sum_probs=231.9
Q ss_pred ccEEEEecEEEcCC-C-ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch
Q 004611 334 LDTVITNAVIIDHT-G-IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ 411 (742)
Q Consensus 334 ~dlVI~Na~Iid~~-g-i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~ 411 (742)
-|++|+|++|+|+. + ...++|.|+||+|++|++...+ ...+.++||++|++|+|||||+|+|+..|.
T Consensus 2 ~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~-----------~~~~~~~iDa~G~~vlPG~ID~H~H~~~~~ 70 (418)
T PRK07369 2 SNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDP-----------IPPDTQIIDASGLILGPGLVDLYSHSGEPG 70 (418)
T ss_pred CCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCccc-----------CCCCCEEEECCCCEEecCEEecccccCCCC
Confidence 47899999999844 3 4678999999999999864210 124578999999999999999999998775
Q ss_pred H-HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecCCCC----CCChHHHHHHHHhcCc
Q 004611 412 L-AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKGN----SAKPDELHEIIKAGAM 484 (742)
Q Consensus 412 ~-~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g~----~~~~~~l~e~i~aGa~ 484 (742)
+ ..+.+.+|...++.||++ ....++..+.......+....+..+. ..++|++++... ....+.+.++.+.|+.
T Consensus 71 ~~~~e~~~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~~~Gv~ 150 (418)
T PRK07369 71 FEERETLASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELAAAGVV 150 (418)
T ss_pred cCCCccHHHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHHHCCCE
Confidence 3 357788888888888874 55556655566677777777776554 457777655432 1346677777888999
Q ss_pred eeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCc-------cch-------------H-----HHH--HHHHhcCCe
Q 004611 485 GLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLN-------ESG-------------F-----VEH--TIAAFKGRT 537 (742)
Q Consensus 485 glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtln-------e~g-------------~-----ve~--~l~a~~g~~ 537 (742)
+++.. ....+...+.++++.+.+.|..+.+|++... ..| . +.. .++...+..
T Consensus 151 ~f~~~-~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~ 229 (418)
T PRK07369 151 GFTDG-QPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTP 229 (418)
T ss_pred EEECC-CcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCc
Confidence 99832 2234667888999999999999999996311 000 0 111 134456889
Q ss_pred EEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHH----hhh----hhhh
Q 004611 538 IHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAF----AES----RIRA 609 (742)
Q Consensus 538 ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~----a~~----Rir~ 609 (742)
+|+.|..... +.++++.++..++ ++++++ ..|||..+.. ++.. ++. |-+.
T Consensus 230 ~hi~HvSs~~---~~~~i~~ak~~g~---------~vt~Ev---------~phhL~l~~~-~~~~~~~~~kv~PPLR~~~ 287 (418)
T PRK07369 230 VHLMRISTAR---SVELIAQAKARGL---------PITAST---------TWMHLLLDTE-ALASYDPNLRLDPPLGNPS 287 (418)
T ss_pred EEEEeCCCHH---HHHHHHHHHHcCC---------CeEEEe---------cHHHHhccHH-HHhccCCCcEECCCCCCHH
Confidence 9999998765 5788887777654 344432 3477755422 2211 111 2345
Q ss_pred hhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhh--hccccCCCcc-cCCCCcHHHHHHHHHHHHHHHcC
Q 004611 610 ETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKS--QRGSFGPSAA-DNDNLRIRRYIAKYTINPAIANG 686 (742)
Q Consensus 610 ~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~--~~~~L~~~~~-~~~gl~~~~aL~~aTiNpA~~lG 686 (742)
...++++.|.+ |.+.+++||+.+.. ..+.....|..+..+.. ...++.+... ...+++++++++++|.|||+++|
T Consensus 288 d~~aL~~~l~~-G~Id~i~SDHaP~~-~~~K~~~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lg 365 (418)
T PRK07369 288 DRQALIEGVRT-GVIDAIAIDHAPYT-YEEKTVAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLG 365 (418)
T ss_pred HHHHHHHHHhc-CCCCEEEcCCCCCC-HHHccCCHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhC
Confidence 56689999988 99999999996543 22221123333322211 1112222222 35579999999999999999999
Q ss_pred CCCCcccccCCCcceEEEECCC
Q 004611 687 FSQFVGSVEVGKLADLVLWKPS 708 (742)
Q Consensus 687 l~d~vGSIe~GK~ADLVV~Dp~ 708 (742)
+. .|+|++|+.|||+++|++
T Consensus 366 l~--~G~i~~G~~ADlvi~d~~ 385 (418)
T PRK07369 366 QE--PPSLAPGQPAELILFDPQ 385 (418)
T ss_pred CC--cCcccCCCcCCEEEEcCC
Confidence 96 599999999999999976
No 47
>PRK07575 dihydroorotase; Provisional
Probab=99.95 E-value=3.4e-27 Score=266.35 Aligned_cols=350 Identities=21% Similarity=0.241 Sum_probs=222.9
Q ss_pred cccEEEEecEEEcCCC-ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch
Q 004611 333 SLDTVITNAVIIDHTG-IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ 411 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~g-i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~ 411 (742)
|+|++|+|++|++..+ ...++|.|+||||.+|++... .....++||++|++|+|||||+|+|+..+.
T Consensus 2 ~~~~~i~~~~i~~~~~~~~~~~I~I~dg~I~~ig~~~~------------~~~~~~vid~~g~~v~PG~ID~H~H~~~~~ 69 (438)
T PRK07575 2 MMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEIS------------ATAVDTVIDAEGLTLLPGVIDPQVHFREPG 69 (438)
T ss_pred cceEEEECCEEECCCCCEEeeeEEEECCEEEEecCCCC------------CCCCCeEEECCCCEEcccEEEeeeccCCCC
Confidence 4689999999998666 566899999999999987421 012358999999999999999999997653
Q ss_pred H-HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHh-cCCCCceEeecCCCCCCChHHHHHHHH-hcCceeE
Q 004611 412 L-AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQS-TDDLPLNFGFTGKGNSAKPDELHEIIK-AGAMGLK 487 (742)
Q Consensus 412 ~-~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a-~~~~~vn~g~~~~g~~~~~~~l~e~i~-aGa~glk 487 (742)
. ..+.+..+...++.+|++ ..+.++..+.......+...++. .....++|++++...... +.++.. .|..|+|
T Consensus 70 ~~~~e~~~~~~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~~~---l~~l~~~~~~~g~~ 146 (438)
T PRK07575 70 LEHKEDLFTASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATPDN---LPELLTANPTCGIK 146 (438)
T ss_pred CcCcchHHHHHHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEEEEEccccccC---HHHHHHhhCCeEEE
Confidence 2 456777777777777774 44445544455566666655554 455678998885544333 333332 3567888
Q ss_pred eccC-----CCC-CHHHHHHHHHHHHHcCCEEEEEcCCCc---cc-----------------------hHHHH--HHHHh
Q 004611 488 LHED-----WGS-TPAAIDNCLTVAEEYDIQVNIHTDTLN---ES-----------------------GFVEH--TIAAF 533 (742)
Q Consensus 488 l~~d-----~~~-t~~~l~~~l~~A~e~g~~v~iH~dtln---e~-----------------------g~ve~--~l~a~ 533 (742)
.+.. ... ....+... ..+.+..+.+|++... .. ..+.. .++..
T Consensus 147 ~f~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~h~e~~~l~~~~~~~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~ 223 (438)
T PRK07575 147 IFMGSSHGPLLVDEEAALERI---FAEGTRLIAVHAEDQARIRARRAEFAGISDPADHSQIQDEEAALLATRLALKLSKK 223 (438)
T ss_pred EEEeeCCCCcccCcHHHHHHH---HHhCCCEEEEeCcChHHHHhhhHhhccCcCcccccccCcHHHHHHHHHHHHHHHHH
Confidence 7741 111 22333333 3467899999996422 00 00111 13344
Q ss_pred cCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH----Hhh----h
Q 004611 534 KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA----FAE----S 605 (742)
Q Consensus 534 ~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia----~a~----~ 605 (742)
.+..+|+.|+.... ..++++.++ + .++++++ ..||+..+. +++. +++ .
T Consensus 224 ~g~~lhi~HiSt~~---~v~~i~~~k--~---------~~vt~ev---------~phhL~l~~-~~~~~~~~~~k~~PPL 279 (438)
T PRK07575 224 YQRRLHILHLSTAI---EAELLRQDK--P---------SWVTAEV---------TPQHLLLNT-DAYERIGTLAQMNPPL 279 (438)
T ss_pred HCCCEEEEECCCHH---HHHHHHHhc--C---------CCEEEEE---------chhhheeCH-HHHhCCCceEEEeCCC
Confidence 68899999998533 344554443 1 1233332 346665542 2221 111 1
Q ss_pred hhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh--hhccccCCCcccCCCCcHHHHHHHHHHHHHH
Q 004611 606 RIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK--SQRGSFGPSAADNDNLRIRRYIAKYTINPAI 683 (742)
Q Consensus 606 Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~--~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~ 683 (742)
|......++++.|.+ |++++++||+.+... .+.....|..+..+. +...++.+......+++++++++++|.|||+
T Consensus 280 R~~~d~~~L~~~l~~-G~id~i~sDh~p~~~-~~k~~~~~~~~~G~~g~e~~l~~l~~~~~~~~lsl~~~~~~~s~npAk 357 (438)
T PRK07575 280 RSPEDNEALWQALRD-GVIDFIATDHAPHTL-EEKAQPYPNSPSGMPGVETSLPLMLTAAMRGKCTVAQVVRWMSTAVAR 357 (438)
T ss_pred CCHHHHHHHHHHHhC-CCCCEEecCCCCCCH-HHccCCcccCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHH
Confidence 334556788888877 999999999865432 111112222222111 1222333322234579999999999999999
Q ss_pred HcCCCCCcccccCCCcceEEEECCCCC----------------------CCCceEEEECCEEEecc
Q 004611 684 ANGFSQFVGSVEVGKLADLVLWKPSFF----------------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 684 ~lGl~d~vGSIe~GK~ADLVV~Dp~~~----------------------~~~p~~Vi~~G~iV~~~ 727 (742)
++|+++ .|+|++|+.|||||||++.. ..++..||++|++||.+
T Consensus 358 ~lgl~~-~G~L~~G~~ADlvi~D~~~~~~v~~~~~~s~~~~sp~~g~~~~G~v~~tiv~G~~v~~~ 422 (438)
T PRK07575 358 AYGIPN-KGRIAPGYDADLVLVDLNTYRPVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDR 422 (438)
T ss_pred HcCCCC-CCccCCCCcCCEEEEcCCCCEEEchHHccccCCCCCCCCCEEeeEEEEEEECCEEEEEC
Confidence 999954 69999999999999997641 11468999999999975
No 48
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=99.95 E-value=4.2e-28 Score=258.92 Aligned_cols=367 Identities=21% Similarity=0.302 Sum_probs=253.3
Q ss_pred cEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch---
Q 004611 335 DTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ--- 411 (742)
Q Consensus 335 dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~--- 411 (742)
.++|+|++|++.+...++||.++||.|.+|++. +.++.+.++||+.|++|+||.||.|+|+..|-
T Consensus 15 rllikgg~vvN~d~~~~aDV~vedGiI~~vg~~------------l~ipgg~~~ida~g~~ViPGgID~Hthlq~p~~G~ 82 (522)
T KOG2584|consen 15 RLLIKGGRVVNDDQSFKADVYVEDGIIKEVGEN------------LIIPGGVKVIDATGKMVIPGGIDPHTHLQMPFMGM 82 (522)
T ss_pred ceeeeCCEEEccCCceeeeEEeccCEEEEeccc------------EEcCCCceEEecCCcEEecCccCccceeccccCCc
Confidence 589999999998889999999999999999985 55678999999999999999999999998773
Q ss_pred HHHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcC-CCCceEeecCCCCC---CChHHHHHHH-HhcCce
Q 004611 412 LAHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTD-DLPLNFGFTGKGNS---AKPDELHEII-KAGAMG 485 (742)
Q Consensus 412 ~~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~-~~~vn~g~~~~g~~---~~~~~l~e~i-~aGa~g 485 (742)
...+.+.+|+..++.||++ .++.......+.....++.+.++++ ...++|+|+..... +-.++++-+. +.|..+
T Consensus 83 ts~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvns 162 (522)
T KOG2584|consen 83 TSVDDFFQGTKAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNS 162 (522)
T ss_pred cchhhhhcccHHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcce
Confidence 3678899999999999985 3333333334556678888988888 67899999876543 3345555444 368889
Q ss_pred eEeccCC----CCCHHHHHHHHHHHHHcCCEEEEEcCCCc--cchH---------------------H--HH-----HHH
Q 004611 486 LKLHEDW----GSTPAAIDNCLTVAEEYDIQVNIHTDTLN--ESGF---------------------V--EH-----TIA 531 (742)
Q Consensus 486 lkl~~d~----~~t~~~l~~~l~~A~e~g~~v~iH~dtln--e~g~---------------------v--e~-----~l~ 531 (742)
++.++.| ..++++|.++++.+++.+....+|+|.-. +.+. + |. +++
T Consensus 163 F~~fmayk~~~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia 242 (522)
T KOG2584|consen 163 FKFFMAYKDLYMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIA 242 (522)
T ss_pred EEeeeeeccccccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHH
Confidence 9988875 58999999999999999999999996311 0000 0 00 122
Q ss_pred HhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhh-hhhhh
Q 004611 532 AFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAES-RIRAE 610 (742)
Q Consensus 532 a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~-Rir~~ 610 (742)
.....++-..|..+.+ +.+.|..+++.+-. ...+.+.+.+. ..-||+.+.+-....+|.-+ .++.+
T Consensus 243 ~~~ncPlyvvhVmsks---aa~~Ia~aRk~g~~---------v~gepita~l~-~dg~hy~~~~w~~Aa~~v~sPPlr~d 309 (522)
T KOG2584|consen 243 RQANCPLYVVHVMSKS---AADAIALARKKGRV---------VFGEPITASLG-TDGSHYWSKDWDHAAAFVTSPPLRPD 309 (522)
T ss_pred HhcCCCcceEEEeehh---HHHHHHHHHhcCce---------eecccchhhhc-ccchhhccCChhhcceeeeCCCCCCC
Confidence 2233344444444433 45556555554321 00011111111 00122222221111111111 23332
Q ss_pred h--h-hHHHHHHHCCCeEEEecCCCccCc----cc-hhhhhhhhhhhhhhhhccccCCCcc-cCCCCcHHHHHHHHHHHH
Q 004611 611 T--I-AAEDILHDMGAISIISSDSQAMGR----IG-EVISRTWQTAHKMKSQRGSFGPSAA-DNDNLRIRRYIAKYTINP 681 (742)
Q Consensus 611 t--~-a~~~~L~d~Gv~~~lgSDs~a~gr----~g-e~i~~~~~~~~~m~~~~~~L~~~~~-~~~gl~~~~aL~~aTiNp 681 (742)
. . .+++.|.. |.+-..+||+.+... +| +.+.+.|...+.. +.+.++.|+.+ ....+++.++++..+.|.
T Consensus 310 ~~t~~~L~~lLa~-g~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGv-edrMsviwekgv~~G~md~~~fVavtstna 387 (522)
T KOG2584|consen 310 PTTPDGLMDLLAE-GDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGV-EDRMSVIWEKGVHSGKMDENRFVAVTSTNA 387 (522)
T ss_pred CCCHHHHHHHHhc-CccceeecCCCCCCHHHHhhccCccccCCCccccc-cccceeeeehhcccCccCcccEEEEecccc
Confidence 2 2 45566654 999999999876432 12 3455566555555 56777888776 556788999999999999
Q ss_pred HHHcCCCCCcccccCCCcceEEEECCCCC----------------------CCCceEEEECCEEEeccC
Q 004611 682 AIANGFSQFVGSVEVGKLADLVLWKPSFF----------------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 682 A~~lGl~d~vGSIe~GK~ADLVV~Dp~~~----------------------~~~p~~Vi~~G~iV~~~~ 728 (742)
|+++++.+++|+|.+|.+||||||||+.. ...|..||.+|++||.+.
T Consensus 388 AkifnlYprKGrIavGsDADiVIwdp~at~tIS~~th~~~~d~NifEGm~~~G~plvtIsrGriv~eng 456 (522)
T KOG2584|consen 388 AKIFNLYPRKGRIAVGSDADIVIWDPNATKTISAKTHHSANDFNIFEGMTVHGVPLVTISRGRVVYENG 456 (522)
T ss_pred hhheeccCcCceecccCCCcEEEECCCcceEeccccccccccceeecCcEecceeEEEEeCCeEEEecC
Confidence 99999999999999999999999999852 126899999999999864
No 49
>PRK09060 dihydroorotase; Validated
Probab=99.95 E-value=6.4e-27 Score=264.49 Aligned_cols=353 Identities=21% Similarity=0.265 Sum_probs=223.9
Q ss_pred cccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH
Q 004611 333 SLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL 412 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~ 412 (742)
.+|++|+|++|++..+...++|.|+||+|++|++... ..+.++||++|++|+|||||+|+|+..|.+
T Consensus 4 ~~d~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~-------------~~~~~~iD~~G~~v~PG~ID~HvH~~~~~~ 70 (444)
T PRK09060 4 TFDLILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSG-------------ASAGEVIDCRGLHVLPGVIDSQVHFREPGL 70 (444)
T ss_pred cCcEEEECCEEECCCCCeeeEEEEECCEEEEecCCCC-------------CCCceEEECCCCEEccCEEeccccccCCCC
Confidence 3689999999999777777999999999999986422 134589999999999999999999976643
Q ss_pred -HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecCCCCCCChHHHHHHH-HhcCceeEe
Q 004611 413 -AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKGNSAKPDELHEII-KAGAMGLKL 488 (742)
Q Consensus 413 -~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g~~~~~~~l~e~i-~aGa~glkl 488 (742)
..+.+..+...++.+|++ ....++......+...+...++.... .++++++++.+...+.+.+.++. ..|+.|++.
T Consensus 71 ~~~e~~~t~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~l~el~~~~gv~g~k~ 150 (444)
T PRK09060 71 EHKEDLETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNADELAELERLPGCAGIKV 150 (444)
T ss_pred CccchHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCHHHHHHHHhhcCceEEEE
Confidence 346677777777777763 33334433445566677666666554 68999888765544445555543 248889998
Q ss_pred ccCC------CCCHHHHHHHHHHHHHcCCEEEEEcCCCcc-------------------------chHHHH--HHHHhcC
Q 004611 489 HEDW------GSTPAAIDNCLTVAEEYDIQVNIHTDTLNE-------------------------SGFVEH--TIAAFKG 535 (742)
Q Consensus 489 ~~d~------~~t~~~l~~~l~~A~e~g~~v~iH~dtlne-------------------------~g~ve~--~l~a~~g 535 (742)
+.+| ..++..+..++ .+.+..+.+|++...- ...+.. .+....+
T Consensus 151 fm~~~~~~~~~~d~~~l~~~~---~~~~~~v~~H~E~~~l~~~~~~~~~~g~~~~~~~~~p~~aE~~av~~~~~la~~~~ 227 (444)
T PRK09060 151 FMGSSTGDLLVEDDEGLRRIL---RNGRRRAAFHSEDEYRLRERKGLRVEGDPSSHPVWRDEEAALLATRRLVRLARETG 227 (444)
T ss_pred EeccCCCCcccCCHHHHHHHH---HhCCCeEEEECCCHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHHC
Confidence 7654 12444555554 4458899999963210 000111 1233457
Q ss_pred CeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH----Hhhh----hh
Q 004611 536 RTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA----FAES----RI 607 (742)
Q Consensus 536 ~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia----~a~~----Ri 607 (742)
.++|+.|..... +.+.++.++.. +++++ .+||+..+....+. +++. |-
T Consensus 228 ~~lhi~h~st~~---~v~~i~~~~~~------------vt~ev---------~ph~l~l~~~~~~~~~~~~~k~~PPlr~ 283 (444)
T PRK09060 228 RRIHVLHVSTAE---EIDFLADHKDV------------ATVEV---------TPHHLTLAAPECYERLGTLAQMNPPIRD 283 (444)
T ss_pred CCEEEEeCCCHH---HHHHHHHhCCC------------eEEEe---------ChHHhccCchhhcccCCceEEEeCCCCC
Confidence 889999988633 34444443321 12221 23444332111010 0111 12
Q ss_pred hhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh--hhccccCCCcccCCCCcHHHHHHHHHHHHHHHc
Q 004611 608 RAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK--SQRGSFGPSAADNDNLRIRRYIAKYTINPAIAN 685 (742)
Q Consensus 608 r~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~--~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~l 685 (742)
....-++++.+.+ |.+.+++||+.+.. ..+.....|.....+. +...++.+.......++++++++++|.|||+++
T Consensus 284 ~~~~~~l~~al~~-G~id~i~sDh~p~~-~~~k~~~~~~~~~G~~g~e~~~~l~~~~v~~g~l~~~~~~~~~s~~pa~~~ 361 (444)
T PRK09060 284 ARHRDGLWRGVRQ-GVVDVLGSDHAPHT-LEEKAKPYPASPSGMTGVQTLVPIMLDHVNAGRLSLERFVDLTSAGPARIF 361 (444)
T ss_pred HHHHHHHHHHHhC-CCccEEecCCCCCC-HHHhcCCcccCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHh
Confidence 2334467788776 99999999986543 2111111222211111 111222222112445999999999999999999
Q ss_pred CCCCCcccccCCCcceEEEECCCC-----------------C-----CCCceEEEECCEEEeccC
Q 004611 686 GFSQFVGSVEVGKLADLVLWKPSF-----------------F-----GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 686 Gl~d~vGSIe~GK~ADLVV~Dp~~-----------------~-----~~~p~~Vi~~G~iV~~~~ 728 (742)
|+.+ +|+|++|+.|||||+|++. | ..+|..||++|+++|.+.
T Consensus 362 gl~~-~G~l~~G~~ADlvl~d~~~~~~v~~~~~~s~~~~sp~~g~~l~g~~~~tiv~G~~v~~~g 425 (444)
T PRK09060 362 GIAG-KGRIAVGYDADFTIVDLKRRETITNEWIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDG 425 (444)
T ss_pred CCCC-CCcccCCCcCCEEEEcCCCCEEEChHHhcccCCCCCCCCCEEeeeEEEEEECCEEEEECC
Confidence 9954 7999999999999999763 1 126789999999999854
No 50
>PRK08417 dihydroorotase; Provisional
Probab=99.95 E-value=4.6e-27 Score=261.15 Aligned_cols=329 Identities=19% Similarity=0.205 Sum_probs=226.4
Q ss_pred EEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchHHHHHHHHHHHHHHhCCCC-CC
Q 004611 354 IGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTG-PA 432 (742)
Q Consensus 354 I~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~~~~al~~GvTTl~~gGtg-p~ 432 (742)
|+|+||||++|++.. .+.++||+.|++|+|||||+|+|+..|.+..+.+.+|...++.||++ ..
T Consensus 1 i~I~dG~I~~i~~~~---------------~~~~viDa~g~~vlPG~ID~HvH~~~~~~~~e~~~t~s~aA~aGGvTtv~ 65 (386)
T PRK08417 1 IRIKDGKITEIGSDL---------------KGEEILDAKGKTLLPALVDLNVSLKNDSLSSKNLKSLENECLKGGVGSIV 65 (386)
T ss_pred CEEECCEEEEecCCC---------------CCCeEEECCCCEEccCeeEEeeeeCCCCcChhhHHHHHHHHHcCCcEEEE
Confidence 579999999998631 35689999999999999999999987765568889999999988874 55
Q ss_pred CCCcccccCCChHHHHHHHHhcCCCC---ceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHHc
Q 004611 433 DGTRATTCTPAPSQMKLMLQSTDDLP---LNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEY 509 (742)
Q Consensus 433 ~~~~~~~~t~~~~~i~~~l~a~~~~~---vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e~ 509 (742)
+.++..+.......++...+..+..+ +.++... ......+.+.++.+.|+.++|.+. ..++..+.++++.++++
T Consensus 66 dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~Gv~~~k~~~--~~~~~~l~~~~~~a~~~ 142 (386)
T PRK08417 66 LYPDSTPAIDNEIALELINSAQRELPMQIFPSIRAL-DEDGKLSNIATLLKKGAKALELSS--DLDANLLKVIAQYAKML 142 (386)
T ss_pred eCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEE-CCCccHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHHHHc
Confidence 55655555556666666555444322 3333222 233346677788888999888753 56889999999999999
Q ss_pred CCEEEEEcCCCcc-------ch------------------HHHH--HHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcC
Q 004611 510 DIQVNIHTDTLNE-------SG------------------FVEH--TIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKN 562 (742)
Q Consensus 510 g~~v~iH~dtlne-------~g------------------~ve~--~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~ 562 (742)
|.++.+|++...- .+ .+.. .++...+..+|+.|..... +.+.++.++..+
T Consensus 143 g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~---~~~~i~~ak~~g 219 (386)
T PRK08417 143 DVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPR---SLELLDKFKSEG 219 (386)
T ss_pred CCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHH---HHHHHHHHHHCC
Confidence 9999999964210 00 0111 1334567889999998755 467777666665
Q ss_pred cccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH----Hhhh----hhhhhhhhHHHHHHHCCCeEEEecCCCcc
Q 004611 563 VLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA----FAES----RIRAETIAAEDILHDMGAISIISSDSQAM 634 (742)
Q Consensus 563 vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia----~a~~----Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~ 634 (742)
+ ++++++ ..|||..+. +++. +++. |-+....++++.|.+ |.+.+++||+.+.
T Consensus 220 ~---------~vt~ev---------~ph~L~l~~-~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~-g~Id~i~SDHaP~ 279 (386)
T PRK08417 220 E---------KLLKEV---------SIHHLILDD-SACENFNTAAKLNPPLRSKEDRLALLEALKE-GKIDFLTSLHSAK 279 (386)
T ss_pred C---------CEEEEe---------chHHHeeCH-HHhcCcCcccEECCCCCCHHHHHHHHHHHhc-CCceEEEcCCCCC
Confidence 3 344443 347776553 2221 1221 234556788999988 9999999998654
Q ss_pred Cccchhhhhhhhhhhhhh--hhccccCCCcc-cCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC--
Q 004611 635 GRIGEVISRTWQTAHKMK--SQRGSFGPSAA-DNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF-- 709 (742)
Q Consensus 635 gr~ge~i~~~~~~~~~m~--~~~~~L~~~~~-~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~-- 709 (742)
. ..+.....|..+..+. +...++.+... ...+++++++++++|.|||+++|++. |+|++|+.|||++||++.
T Consensus 280 ~-~~~K~~~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~--G~l~~G~~ADlvi~d~~~~~ 356 (386)
T PRK08417 280 S-NSKKDLAFDEAAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLNS--GEIEVGKEADLVLFDPNEST 356 (386)
T ss_pred C-HHHccCCHhHCCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCC--CccCCCCcCCEEEEcCCCCe
Confidence 2 2232212343332222 22333333332 34569999999999999999999963 999999999999999753
Q ss_pred --------C-----CCCceEEEECCEEEec
Q 004611 710 --------F-----GAKPEMVIKGGAIAWA 726 (742)
Q Consensus 710 --------~-----~~~p~~Vi~~G~iV~~ 726 (742)
| ..+|..||++|++||.
T Consensus 357 ~~~~~~~p~~g~~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 357 IIDDNFSLYSGDELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred EeCCCCCCccCCEEeccEEEEEECCEEEeC
Confidence 2 2268899999999973
No 51
>PRK06687 chlorohydrolase; Validated
Probab=99.95 E-value=4.9e-26 Score=255.41 Aligned_cols=335 Identities=19% Similarity=0.281 Sum_probs=194.7
Q ss_pred EEEEecEEEcCCC----ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC--
Q 004611 336 TVITNAVIIDHTG----IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC-- 409 (742)
Q Consensus 336 lVI~Na~Iid~~g----i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~-- 409 (742)
++|+|+.|++.++ +.+++|.|+||+|++||+..+. ......++||+.|++|+|||||+|+|+..
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~----------~~~~~~~viD~~g~~v~PGlIn~H~H~~~~~ 71 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPA----------FLEQAEQIIDYQGAWIMPGLVNCHTHSAMTG 71 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccc----------cccccCeEEeCCCCEEccceeeeccCCCccc
Confidence 5899999998554 3458999999999999985331 11235689999999999999999999721
Q ss_pred --------------------------chHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEee
Q 004611 410 --------------------------PQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGF 463 (742)
Q Consensus 410 --------------------------P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~ 463 (742)
|+....+...++..++.+|++-..... ...........++....+++..+
T Consensus 72 ~rg~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~----~~~~~~~~~~~~a~~~~Gir~~~ 147 (419)
T PRK06687 72 LRGIRDDSNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMY----NPNGVDIQQIYQVVKTSKMRCYF 147 (419)
T ss_pred cccccCCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhh----ccccccHHHHHHHHHHhCCceEe
Confidence 111122222344444444442110000 00111223334444444443322
Q ss_pred c----CCCCCCC---hHHHHHHHH----hcC----ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcC-CCccchHHH
Q 004611 464 T----GKGNSAK---PDELHEIIK----AGA----MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTD-TLNESGFVE 527 (742)
Q Consensus 464 ~----~~g~~~~---~~~l~e~i~----aGa----~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~d-tlne~g~ve 527 (742)
. ....... .+...++++ .+. .++.+|..+.++++.+..+++.|+++++++++|+. +..+...+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~ 227 (419)
T PRK06687 148 SPTLFSSETETTAETISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIIL 227 (419)
T ss_pred ccccccCCcccHHHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHH
Confidence 1 1111111 122222322 122 24566778899999999999999999999999994 322211111
Q ss_pred HH--------HHHhc--CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCch
Q 004611 528 HT--------IAAFK--GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIP 597 (742)
Q Consensus 528 ~~--------l~a~~--g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~ 597 (742)
+. ++... +......|.... .++.++..++.++..+.+ |. .+
T Consensus 228 ~~~g~~~~~~l~~~g~l~~~~~~~H~~~~----~~~~~~~la~~g~~v~~~-P~--------------------sn---- 278 (419)
T PRK06687 228 KRYGKRPLAFLEELGYLDHPSVFAHGVEL----NEREIERLASSQVAIAHN-PI--------------------SN---- 278 (419)
T ss_pred HHHCcCHHHHHHHcCCCCCCeEEEEEecC----CHHHHHHHHHcCCeEEEC-cH--------------------Hh----
Confidence 10 11111 111222333222 366677777666532111 10 00
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHH
Q 004611 598 EDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKY 677 (742)
Q Consensus 598 edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~a 677 (742)
. + ....+++...+.+.|+.+.+|||+.+.+.....+.... ....+ +. + .......++++++++++
T Consensus 279 --~-----~-l~~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~-~~~~~--~~--~--~~~~~~~~~~~~~l~~a 343 (419)
T PRK06687 279 --L-----K-LASGIAPIIQLQKAGVAVGIATDSVASNNNLDMFEEGR-TAALL--QK--M--KSGDASQFPIETALKVL 343 (419)
T ss_pred --h-----h-hccCCCcHHHHHHCCCeEEEeCCCCCCCCChhHHHHHH-HHHHH--hc--c--ccCCCccCCHHHHHHHH
Confidence 0 0 12234566678888999999999854322111111110 00000 00 0 01123468999999999
Q ss_pred HHHHHHHcCCCCCcccccCCCcceEEEECCCC-C-----------------CCCceEEEECCEEEeccC
Q 004611 678 TINPAIANGFSQFVGSVEVGKLADLVLWKPSF-F-----------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 678 TiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~-~-----------------~~~p~~Vi~~G~iV~~~~ 728 (742)
|.|||+++|+++++|+|++||.|||+++|.+. + ..++..||++|++++.+.
T Consensus 344 T~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~p~~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g 412 (419)
T PRK06687 344 TIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQPQENMLSHLVYAVKSSDVDDVYIAGEQVVKQG 412 (419)
T ss_pred hHHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcCCccCHHHHhheeCCCCCccEEEECCEEEEECC
Confidence 99999999999889999999999999999752 1 237899999999999863
No 52
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=99.95 E-value=3.9e-26 Score=253.35 Aligned_cols=316 Identities=20% Similarity=0.258 Sum_probs=194.4
Q ss_pred cccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC----
Q 004611 333 SLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI---- 408 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~---- 408 (742)
++|++|+|++|++.++...++|.|+||||++|++... ...++||++|++|+|||||+|+|..
T Consensus 1 ~~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~--------------~~~~~iDa~g~~v~PG~ID~H~h~~~~~~ 66 (383)
T PRK15446 1 MMEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGAS--------------ALPGAIDAEGDYLLPGLVDLHTDNLEKHL 66 (383)
T ss_pred CccEEEECcEEEcCCCceeeeEEEECCEEEEecCCCC--------------CCCceEeCCCCEEEeCeEEcccCCccccc
Confidence 3689999999999888778999999999999997421 2346899999999999999999643
Q ss_pred Cch-----HHHHHHHHHHHHHHhCCCC-CCCCCccc--c--cCCChH---HHHHHHH---hcCCCCceEeecCCC---CC
Q 004611 409 CPQ-----LAHDAIASGITTLVGGGTG-PADGTRAT--T--CTPAPS---QMKLMLQ---STDDLPLNFGFTGKG---NS 469 (742)
Q Consensus 409 ~P~-----~~~~al~~GvTTl~~gGtg-p~~~~~~~--~--~t~~~~---~i~~~l~---a~~~~~vn~g~~~~g---~~ 469 (742)
.|. ...+.+..|...++.+|++ ..+..... . ...... .+...++ +.....++|+|++.. +.
T Consensus 67 ~p~~~~~~~~~~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~ 146 (383)
T PRK15446 67 APRPGVDWPADAALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNP 146 (383)
T ss_pred CCCCCCccchHHHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCc
Confidence 232 2347788888888888874 22221111 0 001121 2223333 234556888888765 34
Q ss_pred CChHHHHHHHHhcCceeEeccCCC----------------------------------------CCHHHHHHHHHHHHHc
Q 004611 470 AKPDELHEIIKAGAMGLKLHEDWG----------------------------------------STPAAIDNCLTVAEEY 509 (742)
Q Consensus 470 ~~~~~l~e~i~aGa~glkl~~d~~----------------------------------------~t~~~l~~~l~~A~e~ 509 (742)
...+.+.++++.|..++|.+++.. .+.+.++.+++.|+++
T Consensus 147 ~~~~~l~~~~~~g~~~~k~fm~~~p~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~e~i~~~v~~A~~~ 226 (383)
T PRK15446 147 DALELFEALLAHPRVDLVSLMDHTPGQRQFRDLEKYREYYAGKYGLSDEEFDAFVEERIALSARYAPPNRRAIAALARAR 226 (383)
T ss_pred chHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhHhhcCHHHHHHHHHHHHHC
Confidence 456778888889999999987652 1334444444444444
Q ss_pred CCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhh--cce-E
Q 004611 510 DIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEH--LDM-L 586 (742)
Q Consensus 510 g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~--ld~-l 586 (742)
|+++..|.+ . .++.++.+...++..+.. +.+.+++.+. .++ +
T Consensus 227 g~~v~sH~~-------------------------~------~~~~i~~a~~~Gv~~~e~----~~~~e~~~~~~~~g~~v 271 (383)
T PRK15446 227 GIPLASHDD-------------------------D------TPEHVAEAHALGVAIAEF----PTTLEAARAARALGMSV 271 (383)
T ss_pred CCceeecCC-------------------------C------CHHHHHHHHHcCCceeeC----CCcHHHHHHHHHCCCEE
Confidence 444444442 1 233444444444322211 1222221111 111 1
Q ss_pred EEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCC
Q 004611 587 MVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADND 666 (742)
Q Consensus 587 ~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~ 666 (742)
..+ .+. .+ +.+......++++ +.+.|++++++||+.+.. .+...+ .+ ....
T Consensus 272 ~~~---~p~---~~---r~~~~~~~~~~~~-~~~~Gv~~~lgSD~~p~~----~~~~~~----~~-----------~~~~ 322 (383)
T PRK15446 272 LMG---APN---VV---RGGSHSGNVSALD-LAAAGLLDILSSDYYPAS----LLDAAF----RL-----------ADDG 322 (383)
T ss_pred EeC---Ccc---cc---cCCcccchHhHHH-HHHCCCcEEEEcCCChhh----HHHHHH----HH-----------HHhc
Confidence 111 000 00 0000111223344 456699999999984321 111111 11 0134
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEecc
Q 004611 667 NLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 667 gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~ 727 (742)
++++.++++++|.|||+++|++++ |+|++||.|||++||++....++..||++|++||..
T Consensus 323 gls~~~al~~~T~npA~~lgl~~~-G~I~~G~~ADlvv~d~~~~~~~v~~v~~~G~~v~~~ 382 (383)
T PRK15446 323 GLDLPQAVALVTANPARAAGLDDR-GEIAPGKRADLVRVRRAGGLPVVRAVWRGGRRVFLA 382 (383)
T ss_pred CCCHHHHHHHHhHHHHHHcCCCCC-cCcCCCCcCCEEEEcCCCCCcchheEEECCEEEEeC
Confidence 789999999999999999999764 999999999999999884445788999999999863
No 53
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=99.95 E-value=4.3e-26 Score=257.71 Aligned_cols=331 Identities=19% Similarity=0.221 Sum_probs=197.3
Q ss_pred cccEEEEecEEEcCC--C--ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC
Q 004611 333 SLDTVITNAVIIDHT--G--IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI 408 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~--g--i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~ 408 (742)
++|++|+|+.|++.+ . +.+++|.|+||+|++||+..+.. ....+.++||+.|++|+|||||+|+|+.
T Consensus 6 ~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~---------~~~~~~~~iD~~g~~v~PG~id~H~Hl~ 76 (443)
T PRK09045 6 PVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEAR---------ARYAAAETVELPDHVLIPGLINAHTHAA 76 (443)
T ss_pred cccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCccccc---------ccCCcceEEeCCCCEEecCEeccccChh
Confidence 368999999999854 2 45689999999999999853321 1124678999999999999999999972
Q ss_pred C-----------------------------chHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCc
Q 004611 409 C-----------------------------PQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPL 459 (742)
Q Consensus 409 ~-----------------------------P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~v 459 (742)
. ++........++..++..|++-+.. .........++....++
T Consensus 77 ~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d--------~~~~~~~~~~~~~~~G~ 148 (443)
T PRK09045 77 MSLLRGLADDLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFND--------MYFFPEAAAEAAHQAGM 148 (443)
T ss_pred hHhhhhccCCCCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEe--------ccccHHHHHHHHHHcCC
Confidence 1 1111223334555666666631110 00111122333333333
Q ss_pred eEeecC-----CCC-CCChHH-HH---HHHHh--cC----ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcC-CCcc
Q 004611 460 NFGFTG-----KGN-SAKPDE-LH---EIIKA--GA----MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTD-TLNE 522 (742)
Q Consensus 460 n~g~~~-----~g~-~~~~~~-l~---e~i~a--Ga----~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~d-tlne 522 (742)
+..+.. ... ....+. ++ +..+. +. .++..|..+.++++.+.++++.|+++|+++.+|+. +..+
T Consensus 149 R~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~ 228 (443)
T PRK09045 149 RAQIGMPVLDFPTAWASDADEYLAKGLELHDQWRHHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQE 228 (443)
T ss_pred eEEEecccccCCCccccCHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHH
Confidence 322111 000 112222 22 11111 21 25666777888999999999999999999999994 2222
Q ss_pred chHHHHHHHHhc-------------CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEe
Q 004611 523 SGFVEHTIAAFK-------------GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVC 589 (742)
Q Consensus 523 ~g~ve~~l~a~~-------------g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~ 589 (742)
++..++... +......|.... .++.++..++.++..+.+ |
T Consensus 229 ---~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l----~~~~~~~la~~g~~i~~~-P------------------- 281 (443)
T PRK09045 229 ---IADSLKQHGQRPLARLARLGLLGPRLIAVHMTQL----TDAEIALLAETGCSVVHC-P------------------- 281 (443)
T ss_pred ---HHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCC----CHHHHHHHHHcCCeEEEC-H-------------------
Confidence 233332211 111222233322 356666666655432111 0
Q ss_pred eccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCc
Q 004611 590 HHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLR 669 (742)
Q Consensus 590 hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~ 669 (742)
..+. + ......+...+.+.|+.+++|||+..+....+.+...+. +..+ .+.. .....+++
T Consensus 282 -~~~~-----------~-~~~~~~~~~~l~~~Gv~v~lGtD~~~~~~~~~~~~~~~~-a~~~--~~~~----~~~~~~~~ 341 (443)
T PRK09045 282 -ESNL-----------K-LASGFCPVAKLLQAGVNVALGTDGAASNNDLDLFGEMRT-AALL--AKAV----AGDATALP 341 (443)
T ss_pred -HHHh-----------h-hccCCCcHHHHHHCCCeEEEecCCCCCCCCccHHHHHHH-HHHH--Hhhc----cCCCCcCC
Confidence 0000 0 112345566778889999999997643211111111111 0000 0000 01234789
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC-----------------CCCceEEEECCEEEecc
Q 004611 670 IRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF-----------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 670 ~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~-----------------~~~p~~Vi~~G~iV~~~ 727 (742)
++++|+++|.|||+++|+++++|+|++||.||||+||.+.+ ..+|..||++|++||++
T Consensus 342 ~~~al~~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~~~~~~~lv~~~~~~~v~~v~v~G~~v~~~ 416 (443)
T PRK09045 342 AHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPVYDPVSQLVYAAGREQVSHVWVAGKQLLDD 416 (443)
T ss_pred HHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCccChHhHhhEeCCCCCccEEEECCEEEEEC
Confidence 99999999999999999998899999999999999998753 13799999999999985
No 54
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=99.95 E-value=1.9e-26 Score=258.20 Aligned_cols=341 Identities=22% Similarity=0.273 Sum_probs=224.4
Q ss_pred ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch-HHHHHHHHHHHHHHhC
Q 004611 349 IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ-LAHDAIASGITTLVGG 427 (742)
Q Consensus 349 i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~-~~~~al~~GvTTl~~g 427 (742)
+.+++|.|+||||++|++... ..+.++||++|++|+|||||+|+|+..+. ...+.+..+...++.+
T Consensus 3 ~~~~~v~I~~g~I~~i~~~~~-------------~~~~~~ida~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
T TIGR00857 3 ETEVDILVEGGRIKKIGKLRI-------------PPDAEVIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHG 69 (411)
T ss_pred eEEEEEEEECCEEEEeeccCC-------------CCCCeEEECCCCEEecCEEEcccCCCCCCCccHhHHHHHHHHHHhC
Confidence 567899999999999975211 23557999999999999999999997543 2356777777777777
Q ss_pred CCC-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecCCCC----CCChHHHHHHHHhcCce--eEeccCCCCCHHHH
Q 004611 428 GTG-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKGN----SAKPDELHEIIKAGAMG--LKLHEDWGSTPAAI 499 (742)
Q Consensus 428 Gtg-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g~----~~~~~~l~e~i~aGa~g--lkl~~d~~~t~~~l 499 (742)
|++ ....++..+.......++...+.... ..++|++++... ....+.+.++.++|+.| ++.+..+..++..+
T Consensus 70 GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~g~~f~~~~~~~~~~~~l 149 (411)
T TIGR00857 70 GFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELKEAGAVGRMFTDDGSEVQDILSM 149 (411)
T ss_pred CeEEEEEecCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHHHCCcEEEEEEeCCcccCCHHHH
Confidence 774 33333434445556667766666544 356666544322 11245566677789998 77665566789999
Q ss_pred HHHHHHHHHcCCEEEEEcCCCc--c-----------------------chHHHHH--HHHhcCCeEEEEecccCCCCCCH
Q 004611 500 DNCLTVAEEYDIQVNIHTDTLN--E-----------------------SGFVEHT--IAAFKGRTIHTYHSEGAGGGHAP 552 (742)
Q Consensus 500 ~~~l~~A~e~g~~v~iH~dtln--e-----------------------~g~ve~~--l~a~~g~~ih~~H~~gaggghap 552 (742)
.++++.++++|+++.+|++... . ...+... +....+.++|+.|..... +.
T Consensus 150 ~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~---~l 226 (411)
T TIGR00857 150 RRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKE---SL 226 (411)
T ss_pred HHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHH---HH
Confidence 9999999999999999996321 0 0011111 334457899999998754 57
Q ss_pred HHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhh--------hhhhhhhhHHHHHHHCCCe
Q 004611 553 DIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAES--------RIRAETIAAEDILHDMGAI 624 (742)
Q Consensus 553 diI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~--------Rir~~t~a~~~~L~d~Gv~ 624 (742)
+.++.++..++ +.++++ ..|||..+. +++..... |-.....++++.+.+ |.+
T Consensus 227 ~~i~~a~~~g~---------~v~~ev---------~ph~L~~~~-~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~-g~i 286 (411)
T TIGR00857 227 ELIVKAKSQGI---------KITAEV---------TPHHLLLSE-EDVARLDGNGKVNPPLREKEDRLALIEGLKD-GII 286 (411)
T ss_pred HHHHHHHHcCC---------cEEEee---------chhhheecH-HHHhCCCccEEEcCCCCCHHHHHHHHHHHhc-CCC
Confidence 77887776653 222221 235554332 22211111 223456678888887 999
Q ss_pred EEEecCCCccCccchhhhhhhhhhhhhhh--hccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceE
Q 004611 625 SIISSDSQAMGRIGEVISRTWQTAHKMKS--QRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADL 702 (742)
Q Consensus 625 ~~lgSDs~a~gr~ge~i~~~~~~~~~m~~--~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADL 702 (742)
.+++||+.+.. ..+.....|.....+.. ...++.+......+++++++++++|.|||+++|++++ |+|++|+.|||
T Consensus 287 ~~i~sDh~p~~-~~~k~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~-G~l~~G~~ADl 364 (411)
T TIGR00857 287 DIIATDHAPHT-LEEKTKEFAAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDK-GTLEEGNPADI 364 (411)
T ss_pred cEEEcCCCCCC-hHHccCCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHhHHHHHHhCCCCC-CccCCCCcCCE
Confidence 99999986542 11111112222222211 1111222111334799999999999999999999764 99999999999
Q ss_pred EEECCCCC----------------------CCCceEEEECCEEEecc
Q 004611 703 VLWKPSFF----------------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 703 VV~Dp~~~----------------------~~~p~~Vi~~G~iV~~~ 727 (742)
++||++.. ..+|..||++|++||.+
T Consensus 365 vi~d~~~~~~~~~~~~~~~~~~sp~~g~~~~g~v~~tiv~G~~v~~~ 411 (411)
T TIGR00857 365 TVFDLKKEWTINAETFYSKAKNTPFEGMSLKGKPIATILRGKVVYED 411 (411)
T ss_pred EEEcCCCCEEEchHHCccCCCCCCcCCCEEEeEEEEEEECCEEEecC
Confidence 99997641 11688999999999864
No 55
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=259.91 Aligned_cols=197 Identities=23% Similarity=0.274 Sum_probs=138.4
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhc---------CCeEEEEecccCCCCCCHHHHHHhhhcCcc
Q 004611 494 STPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFK---------GRTIHTYHSEGAGGGHAPDIIKVCGVKNVL 564 (742)
Q Consensus 494 ~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~---------g~~ih~~H~~gaggghapdiI~~a~~~~vl 564 (742)
.+++++.+.++.|.++|+++.+|+- ..+.++..+++++ +....+-|.+-. .++.+..+++.+++
T Consensus 318 ~~~e~l~~~v~~a~~~gl~v~vHAi---GD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v----~~~~i~R~~~Lgv~ 390 (535)
T COG1574 318 LTEEELEELVRAADERGLPVAVHAI---GDGAVDAALDAFEKARKKNGLKGLRHRIEHAELV----SPDQIERFAKLGVI 390 (535)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEEe---chHHHHHHHHHHHHHhhhcCCccCCceeeeeeec----CHhHHHHHHhcCce
Confidence 5899999999999999999999992 2333555544332 344556666554 58999999999988
Q ss_pred cCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhh---hhhhhhHHHHHHHCCCeEEEecCCCccCccchhh
Q 004611 565 PSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRI---RAETIAAEDILHDMGAISIISSDSQAMGRIGEVI 641 (742)
Q Consensus 565 psstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Ri---r~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i 641 (742)
+|.+.. +..... .....|+ |.....++..|.+.|+.+++|||++.+.
T Consensus 391 ~svQP~--------------------f~~~~~----~~~~~rlG~~r~~~~~p~~~ll~~G~~la~gSD~Pv~~------ 440 (535)
T COG1574 391 ASVQPN--------------------FLFSDG----EWYVDRLGEERASRSYPFRSLLKAGVPLAGGSDAPVEP------ 440 (535)
T ss_pred Eeeccc--------------------cccccc----hHHHHhhhhhhhhccCcHHHHHHCCCeEeccCCCCCCC------
Confidence 666521 111110 1222233 3444567777888899999999996532
Q ss_pred hhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCC--------C
Q 004611 642 SRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGA--------K 713 (742)
Q Consensus 642 ~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~--------~ 713 (742)
...|...+.+.....+-.........++++++|++||.|+|++.|.++++|+|++||.|||+|||.++|.. +
T Consensus 441 ~dP~~~i~~AVtr~~~~g~~~~~~~~L~~~eAL~~yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~d~f~~~~~~i~~~~ 520 (535)
T COG1574 441 YDPWLGIYAAVTRKTPGGRVLGPEERLTREEALRAYTEGGAYASGAEGEKGSLEPGKLADFAVLDRDPFTVDPDSIKDTK 520 (535)
T ss_pred CChHHHHHHHHcCCCCCCCCCccccccCHHHHHHHHhhhhHHhhhccccccccccCceeeEEEecCCcccCChHHhccce
Confidence 24454444443221111110001127999999999999999999999999999999999999999988754 7
Q ss_pred ceEEEECCEEEecc
Q 004611 714 PEMVIKGGAIAWAN 727 (742)
Q Consensus 714 p~~Vi~~G~iV~~~ 727 (742)
+..|+++|++||..
T Consensus 521 v~~T~~~Gk~VY~~ 534 (535)
T COG1574 521 VVLTIVAGKVVYRA 534 (535)
T ss_pred EEEEEEcCeEeecC
Confidence 89999999999974
No 56
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=99.95 E-value=1e-25 Score=254.73 Aligned_cols=328 Identities=18% Similarity=0.230 Sum_probs=193.8
Q ss_pred ccEEEEecEEEcCCC---ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc
Q 004611 334 LDTVITNAVIIDHTG---IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP 410 (742)
Q Consensus 334 ~dlVI~Na~Iid~~g---i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P 410 (742)
|+++|+|++|++.++ +.+++|+|+||+|++|++...+ ....++||+.|++|+|||||+|+|+...
T Consensus 1 ~~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~------------~~~~~vID~~G~~vlPGlId~H~H~~~~ 68 (445)
T PRK07228 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDL------------EDYDDHIDATGKVVIPGLIQGHIHLCQT 68 (445)
T ss_pred CeEEEEccEEEecCCCcEecccEEEEECCEEEEecCCccc------------CcCCeEEeCCCCEEecCEEecccCCccc
Confidence 579999999998653 6779999999999999975321 1367899999999999999999997310
Q ss_pred ----------------------------hHHHHHHHHHHHHHHhCCCCC-CCCCcccccCCChHHHHHHHHhcCCCCceE
Q 004611 411 ----------------------------QLAHDAIASGITTLVGGGTGP-ADGTRATTCTPAPSQMKLMLQSTDDLPLNF 461 (742)
Q Consensus 411 ----------------------------~~~~~al~~GvTTl~~gGtgp-~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~ 461 (742)
+........+...++.+|++- .+... .......+++....+++.
T Consensus 69 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~-------~~~~~~~~~a~~~~g~r~ 141 (445)
T PRK07228 69 LFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMES-------VHHTDSAFEAAGESGIRA 141 (445)
T ss_pred cceeccCCCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEcccc-------ccChHHHHHHHHHcCCeE
Confidence 011122333444444555421 11000 001122233333333332
Q ss_pred ee----cCC-----CC-CC-ChHHH---HHHHHh--cCc------eeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-C
Q 004611 462 GF----TGK-----GN-SA-KPDEL---HEIIKA--GAM------GLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-D 518 (742)
Q Consensus 462 g~----~~~-----g~-~~-~~~~l---~e~i~a--Ga~------glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-d 518 (742)
.+ ... .. .. ..+.+ .++++. |.. ++..+..+.++++.+.++++.|+++|+++++|+ +
T Consensus 142 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e 221 (445)
T PRK07228 142 VLGKVMMDYGDDVPEGLQEDTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASE 221 (445)
T ss_pred EEecceecCCcCCCccccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 11 110 00 01 11222 223221 321 233445556889999999999999999999999 3
Q ss_pred CCccchHHHHHHHH-------------hcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcce
Q 004611 519 TLNESGFVEHTIAA-------------FKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDM 585 (742)
Q Consensus 519 tlne~g~ve~~l~a-------------~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~ 585 (742)
+..+ ++..... ..+......|.... .++.++.+++.++..+.+ |+
T Consensus 222 ~~~~---~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~----~~~~~~~~~~~g~~v~~~-P~-------------- 279 (445)
T PRK07228 222 NRGE---IETVEEETGMRNIHYLDEVGLTGEDLILAHCVWL----DEEEREILAETGTHVTHC-PS-------------- 279 (445)
T ss_pred CHHH---HHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecC----CHHHHHHHHHcCCeEEEC-hH--------------
Confidence 3222 2211111 11233445555433 366677777766532211 11
Q ss_pred EEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhh-hhhccccCCCccc
Q 004611 586 LMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKM-KSQRGSFGPSAAD 664 (742)
Q Consensus 586 l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m-~~~~~~L~~~~~~ 664 (742)
.+. . ....+.+...+.+.|+++++|||+.+.+...+ .|...... ..++.. ...
T Consensus 280 ------~~~-----------~-~~~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~~----~~~~~~~~~~~~~~~----~~~ 333 (445)
T PRK07228 280 ------SNL-----------K-LASGIAPVPDLLERGINVALGADGAPCNNTLD----PFTEMRQAALIQKVD----RLG 333 (445)
T ss_pred ------Hhh-----------h-cccccCcHHHHHHCCCeEEEcCCCCccCCCcc----HHHHHHHHHHHhhhc----cCC
Confidence 000 0 01223445566777999999999754332211 22211110 000100 001
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC-------------------CCCceEEEECCEEEe
Q 004611 665 NDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF-------------------GAKPEMVIKGGAIAW 725 (742)
Q Consensus 665 ~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~-------------------~~~p~~Vi~~G~iV~ 725 (742)
...+++.++++++|.|||+++|+++.+|+|++||.|||||+|.+.+ ..++..||++|+++|
T Consensus 334 ~~~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 413 (445)
T PRK07228 334 PTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSHGVDVLSHLVYAAHGSDVETTMVDGKIVM 413 (445)
T ss_pred CcccCHHHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCcccCHHHHhheeCCCCCeeEEEECCEEEE
Confidence 2468999999999999999999988899999999999999998742 236899999999999
Q ss_pred ccC
Q 004611 726 ANM 728 (742)
Q Consensus 726 ~~~ 728 (742)
++.
T Consensus 414 ~~g 416 (445)
T PRK07228 414 EDG 416 (445)
T ss_pred ECC
Confidence 863
No 57
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=99.94 E-value=2.7e-25 Score=247.25 Aligned_cols=318 Identities=22% Similarity=0.266 Sum_probs=190.3
Q ss_pred EEEEecEEEcCC---CceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC---
Q 004611 336 TVITNAVIIDHT---GIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC--- 409 (742)
Q Consensus 336 lVI~Na~Iid~~---gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~--- 409 (742)
++|+|++|++++ .+.+++|.|+||||++|++.... ...+..++||++|++|+|||||+|+|+..
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~----------~~~~~~~viD~~g~~i~PGlid~H~Hl~~~~~ 70 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPL----------PAYPADEVIDAKGKVVMPGLVNTHTHLAMTLL 70 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCcccc----------ccCCcCeEEeCCCCEEccCccccccchhhHHh
Confidence 489999999864 25678999999999999975331 11246789999999999999999999731
Q ss_pred -------------------------chH--------HHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCC
Q 004611 410 -------------------------PQL--------AHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDD 456 (742)
Q Consensus 410 -------------------------P~~--------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~ 456 (742)
++. +.+.+.+|+||+++.+.. +. ....++.+.
T Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~-----------~~----~~~~~~~~~ 135 (411)
T cd01298 71 RGLADDLPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFF-----------YP----DAVAEAAEE 135 (411)
T ss_pred hcccCCCCHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECcccc-----------ch----HHHHHHHHH
Confidence 111 122334455554443220 10 222233322
Q ss_pred CCceEeec----CCCCC--CC----hHHHHHHHH----hcCceeE----eccCCCCCHHHHHHHHHHHHHcCCEEEEEcC
Q 004611 457 LPLNFGFT----GKGNS--AK----PDELHEIIK----AGAMGLK----LHEDWGSTPAAIDNCLTVAEEYDIQVNIHTD 518 (742)
Q Consensus 457 ~~vn~g~~----~~g~~--~~----~~~l~e~i~----aGa~glk----l~~d~~~t~~~l~~~l~~A~e~g~~v~iH~d 518 (742)
.+++..+. ..... .. .+.+.++++ .|...+| .+..+..+++.+.++++.|+++|+++.+|+.
T Consensus 136 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~ 215 (411)
T cd01298 136 LGIRAVLGRGIMDLGTEDVEETEEALAEAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLA 215 (411)
T ss_pred hCCeEEEEcceecCCCcccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEec
Confidence 33332211 11111 11 222223332 2233344 3455678899999999999999999999973
Q ss_pred -CCccchHHHHHHHHh-------------cCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcc
Q 004611 519 -TLNESGFVEHTIAAF-------------KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLD 584 (742)
Q Consensus 519 -tlne~g~ve~~l~a~-------------~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld 584 (742)
+..+ .+.....+ .+....+.|.... .++.++.+++.++..+.+ |
T Consensus 216 e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l----~~~~~~~l~~~gi~~~~~-p-------------- 273 (411)
T cd01298 216 ETEDE---VEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWL----TDEEIELLAETGTGVAHN-P-------------- 273 (411)
T ss_pred CCHHH---HHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCC----CHHHHHHHHHcCCeEEEC-h--------------
Confidence 2211 11111111 1222233444332 367777777777542222 1
Q ss_pred eEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhh-hhhccccCCCcc
Q 004611 585 MLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKM-KSQRGSFGPSAA 663 (742)
Q Consensus 585 ~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m-~~~~~~L~~~~~ 663 (742)
+.+. +. ...+.+...+.+.|+.+++|||++...... ..|...... ...+ +.. .
T Consensus 274 ------~~~~-----------~~-~~~~~~~~~~~~~Gv~~~~GsD~~~~~~~~----~~~~~~~~~~~~~~--~~~--~ 327 (411)
T cd01298 274 ------ASNM-----------KL-ASGIAPVPEMLEAGVNVGLGTDGAASNNNL----DMFEEMRLAALLQK--LAH--G 327 (411)
T ss_pred ------HHhh-----------hh-hhCCCCHHHHHHCCCcEEEeCCCCccCCCc----CHHHHHHHHHHHhc--ccc--C
Confidence 1000 00 112344566778899999999986432111 122111110 0001 000 0
Q ss_pred cCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC-----------------CCCceEEEECCEEEec
Q 004611 664 DNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF-----------------GAKPEMVIKGGAIAWA 726 (742)
Q Consensus 664 ~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~-----------------~~~p~~Vi~~G~iV~~ 726 (742)
...++++.++|+++|.|||+++|++ .+|+|++||.||||+||.+.+ ..++..||++|++||.
T Consensus 328 ~~~~~~~~~al~~~T~~~A~~lg~~-~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~G~~v~~ 406 (411)
T cd01298 328 DPTALPAEEALEMATIGGAKALGLD-EIGSLEVGKKADLILIDLDGPHLLPVHDPISHLVYSANGGDVDTVIVNGRVVME 406 (411)
T ss_pred CCCcCCHHHHHHHHHhhHHHHhCCc-cCCCcCCCccCCEEEEeCCCCccCCccchhhHheEecCCCCeeEEEECCEEEEE
Confidence 1247999999999999999999998 689999999999999997632 2378999999999997
Q ss_pred c
Q 004611 727 N 727 (742)
Q Consensus 727 ~ 727 (742)
+
T Consensus 407 ~ 407 (411)
T cd01298 407 D 407 (411)
T ss_pred C
Confidence 5
No 58
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=99.94 E-value=6.2e-25 Score=248.81 Aligned_cols=333 Identities=19% Similarity=0.246 Sum_probs=199.1
Q ss_pred EEEEecEEEcCCC----ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC--
Q 004611 336 TVITNAVIIDHTG----IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC-- 409 (742)
Q Consensus 336 lVI~Na~Iid~~g----i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~-- 409 (742)
+++.|+.|++.++ +.+++|.|+||+|++|++.... . .++.++||+.|++|+|||||+|+|+..
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~----------~-~~~~~vID~~g~~v~PGlVn~H~H~~~~~ 72 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGAL----------P-QPADEVFDARGHVVTPGLVNTHHHFYQTL 72 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccC----------C-CCCCeEEeCCCCEEecceEeccccccchh
Confidence 3455568888654 4568999999999999996331 0 146789999999999999999999731
Q ss_pred ---------------------------chHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEe
Q 004611 410 ---------------------------PQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFG 462 (742)
Q Consensus 410 ---------------------------P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g 462 (742)
++........++..++..|++-+-.............++.++++....+++..
T Consensus 73 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~ 152 (451)
T PRK08203 73 TRALPAAQDAELFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFH 152 (451)
T ss_pred cccccccCCCcHHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEE
Confidence 11122333445555555555311110000011112335666677766666543
Q ss_pred ecCC--------C--CC----CCh----HHHHHHHHhc-------C--ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEE
Q 004611 463 FTGK--------G--NS----AKP----DELHEIIKAG-------A--MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNI 515 (742)
Q Consensus 463 ~~~~--------g--~~----~~~----~~l~e~i~aG-------a--~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~i 515 (742)
+... + .. ... +..+++++.. . .++..+..+.++++.+.++++.|+++|+++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~ 232 (451)
T PRK08203 153 ATRGSMSLGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHT 232 (451)
T ss_pred EecceeecCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEE
Confidence 3210 0 00 111 2233344322 1 23556777788999999999999999999999
Q ss_pred EcC-CCccchHHHHHHHHh-------------cCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhh
Q 004611 516 HTD-TLNESGFVEHTIAAF-------------KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDE 581 (742)
Q Consensus 516 H~d-tlne~g~ve~~l~a~-------------~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e 581 (742)
|+. +..+ ++..++.+ .+......|.... .++.++.+++.++..+.+ |+
T Consensus 233 H~~e~~~~---~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l----~~~~~~~la~~g~~v~~~-P~---------- 294 (451)
T PRK08203 233 HLAETLDE---EAFCLERFGMRPVDYLEDLGWLGPDVWLAHCVHL----DDAEIARLARTGTGVAHC-PC---------- 294 (451)
T ss_pred EeCCCHHH---HHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEeCC----CHHHHHHHHhcCCeEEEC-cH----------
Confidence 983 3332 12222211 1222333343332 366777777776532211 11
Q ss_pred hcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCC
Q 004611 582 HLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPS 661 (742)
Q Consensus 582 ~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~ 661 (742)
.+. ++ ...+.+...+.+.|+.+++|||+.........+...+. +... .. +..
T Consensus 295 ----------~~~-----------~l-~~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~-~~~~--~~--~~~- 346 (451)
T PRK08203 295 ----------SNM-----------RL-ASGIAPVRELRAAGVPVGLGVDGSASNDGSNLIGEARQ-ALLL--QR--LRY- 346 (451)
T ss_pred ----------Hhh-----------hh-ccCCCCHHHHHHCCCeEEEecCCCccCCCcCHHHHHHH-HHHH--hh--ccc-
Confidence 000 01 12344566778889999999997543211111111111 0000 00 000
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC----------------CCCceEEEECCEEEe
Q 004611 662 AADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF----------------GAKPEMVIKGGAIAW 725 (742)
Q Consensus 662 ~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~----------------~~~p~~Vi~~G~iV~ 725 (742)
....+++.++++++|.|||+++|++ .+|+|++||.|||+++|++.. ..++..||++|+++|
T Consensus 347 --~~~~i~~~~~l~~~T~~~A~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~~~~~~p~~~l~~~~~~~v~~v~v~G~~v~ 423 (451)
T PRK08203 347 --GPDAMTAREALEWATLGGARVLGRD-DIGSLAPGKLADLALFDLDELRFAGAHDPVAALVLCGPPRADRVMVGGRWVV 423 (451)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHhCCC-CCCCcCCCCccCEEEEcCCccccCCccChHHHHHccCCCCccEEEECCEEEE
Confidence 1346899999999999999999997 589999999999999997542 237899999999999
Q ss_pred ccC
Q 004611 726 ANM 728 (742)
Q Consensus 726 ~~~ 728 (742)
++.
T Consensus 424 ~~~ 426 (451)
T PRK08203 424 RDG 426 (451)
T ss_pred ECC
Confidence 863
No 59
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.94 E-value=3.2e-25 Score=245.80 Aligned_cols=324 Identities=21% Similarity=0.284 Sum_probs=198.1
Q ss_pred cccEEEEecEEEcCC-C-ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc
Q 004611 333 SLDTVITNAVIIDHT-G-IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP 410 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~-g-i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P 410 (742)
++|++|+|++|+|.. + +...+|.|+||+|++|++... ....++||++|++|+|||||+|+|+..+
T Consensus 2 ~~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~-------------~~~~~viD~~g~~v~PGliD~H~H~~~~ 68 (379)
T PRK12394 2 KNDILITNGHIIDPARNINEINNLRIINDIIVDADKYPV-------------ASETRIIHADGCIVTPGLIDYHAHVFYD 68 (379)
T ss_pred CccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCC-------------CCCCeEEECCCCEEECCEEEeeecCCCC
Confidence 358999999999854 3 556799999999999987421 1355899999999999999999997432
Q ss_pred h------HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCce----EeecCCCC-------C---C
Q 004611 411 Q------LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLN----FGFTGKGN-------S---A 470 (742)
Q Consensus 411 ~------~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn----~g~~~~g~-------~---~ 470 (742)
. ....+++.|+||+++.|.. ...+...+...+.+.+..+++ +++.+... . .
T Consensus 69 g~~~~~~~~~~~l~~G~Ttv~d~g~~---------~~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~ 139 (379)
T PRK12394 69 GTEGGVRPDMYMPPNGVTTVVDAGSA---------GTANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNI 139 (379)
T ss_pred CcccccCHHHHHHhCCccEEEECCCC---------CcccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHC
Confidence 1 1345778889998886541 012232333333344544443 23333211 0 1
Q ss_pred ChHHHHHHHH---hcCceeEeccCC----CCCHHHHHHHHHHHHHcCCEEEEEcCC-CccchHHHHHHHHhcC--CeEEE
Q 004611 471 KPDELHEIIK---AGAMGLKLHEDW----GSTPAAIDNCLTVAEEYDIQVNIHTDT-LNESGFVEHTIAAFKG--RTIHT 540 (742)
Q Consensus 471 ~~~~l~e~i~---aGa~glkl~~d~----~~t~~~l~~~l~~A~e~g~~v~iH~dt-lne~g~ve~~l~a~~g--~~ih~ 540 (742)
..+..+++++ .++.|+|+.... ..+++.+..+++.|+++++++.+|+.. ..+ .++.+..... ...|.
T Consensus 140 ~~~~~~~~~~~~~~~~~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~---~~~~~~~l~~g~~~~H~ 216 (379)
T PRK12394 140 DENKIHALFRQYRNVLQGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVAVHSTHPVLP---MKELVSLLRRGDIIAHA 216 (379)
T ss_pred CHHHHHHHHHHCcCcEEEEEEEEecccccccchHHHHHHHHHHHHcCCCEEEEeCCCCcc---HHHHHHhcCCCCEEEec
Confidence 1244555543 356677765322 347889999999999999999999953 222 2333333222 23444
Q ss_pred EecccC----CCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHH
Q 004611 541 YHSEGA----GGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAED 616 (742)
Q Consensus 541 ~H~~ga----ggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~ 616 (742)
++..+. ......+.+..+.+.++ .+..|+-... ...-..++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~G~----------------------~~~~~~g~s~-------------~~~~~~~~ 261 (379)
T PRK12394 217 FHGKGSTILTEEGAVLAEVRQARERGV----------------------IFDAANGRSH-------------FDMNVARR 261 (379)
T ss_pred CCCCCCCcCCCCCCChHHHHHHHhCCe----------------------EEEecCCccc-------------cchHHHHH
Confidence 443210 00011233333444332 2223331110 00011223
Q ss_pred HHHHCCC-eEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCccccc
Q 004611 617 ILHDMGA-ISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVE 695 (742)
Q Consensus 617 ~L~d~Gv-~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe 695 (742)
.+ +.|+ ++++|||+.+.......+...+....++ ...+++++++++++|.|||+++|+++..|+|+
T Consensus 262 ~l-~~G~~~~~lgTD~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~at~~~a~~~g~~~~~G~i~ 328 (379)
T PRK12394 262 AI-ANGFLPDIISSDLSTITKLAWPVYSLPWVLSKY------------LALGMALEDVINACTHTPAVLMGMAAEIGTLA 328 (379)
T ss_pred HH-HCCCCceEEECCCCCCCcccCccchHHHHHHHH------------HHcCCCHHHHHHHHHHHHHHHhCCCCCCCccC
Confidence 44 5695 8999999866432211111111111111 13479999999999999999999975589999
Q ss_pred CCCcceEEEECCCCCC----------------CCceEEEECCEEEeccCC
Q 004611 696 VGKLADLVLWKPSFFG----------------AKPEMVIKGGAIAWANMG 729 (742)
Q Consensus 696 ~GK~ADLVV~Dp~~~~----------------~~p~~Vi~~G~iV~~~~g 729 (742)
+|+.|||++||++.+. .+|..||++|++||.++.
T Consensus 329 ~G~~ADl~~~~~~~~~~~~~d~~g~~~~~~~~~~v~~t~v~G~~v~~~~~ 378 (379)
T PRK12394 329 PGAFADIAIFKLKNRHVEFADIHGETLTGTHVLVPQMTIKSGEILYRQID 378 (379)
T ss_pred CCCccCEEEEecCcCcceeccCCCCEEEeeeecceEEEEECCEEEEecCC
Confidence 9999999999966421 168999999999998543
No 60
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=99.94 E-value=4.9e-25 Score=248.60 Aligned_cols=336 Identities=21% Similarity=0.230 Sum_probs=195.5
Q ss_pred ccEEEEecEEEcCCC----ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC
Q 004611 334 LDTVITNAVIIDHTG----IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC 409 (742)
Q Consensus 334 ~dlVI~Na~Iid~~g----i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~ 409 (742)
|+++|+|++|++.+. +.+++|+|+||+|++||+.... ...+++++||+.|++|+|||||+|+|+..
T Consensus 1 ~~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~----------~~~~~~~viD~~g~~i~PGlVn~H~H~~~ 70 (435)
T PRK15493 1 MKTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFA----------SDFEVDEVIDMKGKWVLPGLVNTHTHVVM 70 (435)
T ss_pred CeEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCcccc----------ccCCCCeEEeCCCCEEccceeecccCccc
Confidence 468999999997432 4568999999999999984221 12356789999999999999999999720
Q ss_pred ----------------------------chHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceE
Q 004611 410 ----------------------------PQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNF 461 (742)
Q Consensus 410 ----------------------------P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~ 461 (742)
|+....+...++..++..|++-...... ..........++....+++.
T Consensus 71 ~~~rg~~~~~~l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~----~~~~~~~~~~~a~~~~GiR~ 146 (435)
T PRK15493 71 SLLRGIGDDMLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFN----PIGVDQDAIMETVSRSGMRA 146 (435)
T ss_pred hhhhccCCCCCHHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEcccc----ccccCHHHHHHHHHHcCCcE
Confidence 1122223334444445555421100000 00011123344444455553
Q ss_pred ee----cCCCCCCC-hHHH---HHHHHh--c---C--ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-CCCccchH
Q 004611 462 GF----TGKGNSAK-PDEL---HEIIKA--G---A--MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-DTLNESGF 525 (742)
Q Consensus 462 g~----~~~g~~~~-~~~l---~e~i~a--G---a--~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-dtlne~g~ 525 (742)
.+ ...+.... .+.+ ...++. + . .++.+|..+.++++.+.++.++|+++|+++++|+ ++..+...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~ 226 (435)
T PRK15493 147 AVSRTLFSFGTKEDEKKAIEEAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRD 226 (435)
T ss_pred EEeeeecCCCCCccHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHH
Confidence 22 11111111 1112 222211 1 1 2566788889999999999999999999999999 44333211
Q ss_pred HHHH--------HHH--hcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCC
Q 004611 526 VEHT--------IAA--FKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKD 595 (742)
Q Consensus 526 ve~~--------l~a--~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~ 595 (742)
+++. +.. .-+......|.... .++.++..++.++. ++|....+
T Consensus 227 ~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l----~~~d~~~la~~g~~-----------------------v~~~P~sn 279 (435)
T PRK15493 227 IEAQYGKRPVEYAASCGLFKRPTVIAHGVVL----NDNERAFLAEHDVR-----------------------VAHNPNSN 279 (435)
T ss_pred HHHHhCCCHHHHHHHcCCCCCCcEEEEeecC----CHHHHHHHHHcCCe-----------------------EEEChHHH
Confidence 1111 110 11222233333322 34555555555532 11111000
Q ss_pred chHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHH
Q 004611 596 IPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIA 675 (742)
Q Consensus 596 ~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~ 675 (742)
.+ ....+++...|.+.|+.+++|||+.+.+...+.+..... +..+ +.+. ......++++++++
T Consensus 280 ---------~~-l~~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~-a~~~--~~~~----~~~~~~~~~~~~l~ 342 (435)
T PRK15493 280 ---------LK-LGSGIANVKAMLEAGIKVGIATDSVASNNNLDMFEEMRI-ATLL--QKGI----HQDATALPVETALT 342 (435)
T ss_pred ---------HH-HhcCcccHHHHHHCCCeEEEccCccccCCCcCHHHHHHH-HHHH--Hhhc----cCCCCcCCHHHHHH
Confidence 01 123455667788889999999998543211111111110 0001 0100 01235789999999
Q ss_pred HHHHHHHHHcCCCCCcccccCCCcceEEEECCCC-C-----------------CCCceEEEECCEEEeccC
Q 004611 676 KYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF-F-----------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 676 ~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~-~-----------------~~~p~~Vi~~G~iV~~~~ 728 (742)
++|.|||+++|+++ +|+|++||.||||+||.+. + +.++..||++|++++.+.
T Consensus 343 ~aT~~gA~~lg~~~-~G~l~~G~~ADlvv~d~~~~~~~~p~~d~~~~lv~~~~~~~V~~v~V~G~~v~~~g 412 (435)
T PRK15493 343 LATKGAAEVIGMKQ-TGSLEVGKCADFITIDPSNKPHLQPADEVLSHLVYAASGKDISDVIINGKRVVWNG 412 (435)
T ss_pred HHhHHHHHHcCCCC-CCccCCCCcCCEEEEcCCCCCCcCCccChHHhEEEeCCCCCccEEEECCEEEEECC
Confidence 99999999999975 8999999999999999632 1 237899999999999874
No 61
>PRK09061 D-glutamate deacylase; Validated
Probab=99.94 E-value=2.2e-25 Score=255.74 Aligned_cols=366 Identities=21% Similarity=0.271 Sum_probs=215.7
Q ss_pred cccEEEEecEEEcCCCc--eeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc
Q 004611 333 SLDTVITNAVIIDHTGI--FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP 410 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~gi--~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P 410 (742)
++|++|+|++|+|+++. ..++|.|+||+|++|++.. ..+.++||++|++|+|||||+|+|+..+
T Consensus 18 ~~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~--------------~~~~~viD~~g~~v~PG~ID~H~H~~~~ 83 (509)
T PRK09061 18 PYDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAA--------------IEGDRTIDATGLVVAPGFIDLHAHGQSV 83 (509)
T ss_pred cCCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCC--------------CCCCeEEeCCCCEEecCeEeeeeCCCCC
Confidence 47899999999996653 4479999999999998741 1356899999999999999999999877
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCC----------------------
Q 004611 411 QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGN---------------------- 468 (742)
Q Consensus 411 ~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~---------------------- 468 (742)
.....++..|+||++.+..++ .+-...++.. .....++|++++....
T Consensus 84 ~~~~~~~~~GvTtvv~~~~~~---------~p~~~~~~~~--~~~~~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~ 152 (509)
T PRK09061 84 AAYRMQAFDGVTTALELEAGV---------LPVARWYAEQ--AGEGRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKA 152 (509)
T ss_pred ccchhhccCCceeEEeeccCC---------CCHHHHHHHH--HhcCCcceeehhcCcHHHHHHHhCCccccccccccccc
Confidence 767778889999988752211 0111112111 1223356776432211
Q ss_pred ------C---CChHH---HHHHH----HhcCceeEeccCC--CCCHHHHHHHHHHHHHcCCEEEEEcCCCc------cch
Q 004611 469 ------S---AKPDE---LHEII----KAGAMGLKLHEDW--GSTPAAIDNCLTVAEEYDIQVNIHTDTLN------ESG 524 (742)
Q Consensus 469 ------~---~~~~~---l~e~i----~aGa~glkl~~d~--~~t~~~l~~~l~~A~e~g~~v~iH~dtln------e~g 524 (742)
. .+.++ +.+++ +.|+.+++....| ..+++++.++++.|.++|..+.+|++... +..
T Consensus 153 ~~~~~~~~~~~t~~el~~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~ 232 (509)
T PRK09061 153 LGDPRWQERAATPAELAEILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVD 232 (509)
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHH
Confidence 1 11233 33333 4899999865444 57899999999999999999999996421 112
Q ss_pred HHHHHHH--HhcCCeEEEEecccCCCCC---CHHHHHHhhhcCcccCCCCCCCCCcchh-------hh----hhcceE--
Q 004611 525 FVEHTIA--AFKGRTIHTYHSEGAGGGH---APDIIKVCGVKNVLPSSTNPTRPYTSNT-------ID----EHLDML-- 586 (742)
Q Consensus 525 ~ve~~l~--a~~g~~ih~~H~~gagggh---apdiI~~a~~~~vlpsstnp~~p~t~~t-------l~----e~ld~l-- 586 (742)
.+++.+. ...|..+|+.|+...+... ..+.++.++..++-.. ..+.||+... +. +.++..
T Consensus 233 av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt--~e~~P~~~~~t~~~~~~l~~~~~~~~~~~~~ 310 (509)
T PRK09061 233 AYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVT--TEAYPYGAGSTVVGAAFFDPGWLERMGLGYG 310 (509)
T ss_pred HHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEE--EEecCcchhhhhhcccccCHHHHHHhCCCHH
Confidence 2344333 3457789999998765422 2355666766664211 1122333110 00 000000
Q ss_pred -EEeeccCCCchHHHHHhhhhhh----------------hhhhhHHHHHHHCCCeEEEecCCCccCc-c-chhhhhhhhh
Q 004611 587 -MVCHHLHKDIPEDVAFAESRIR----------------AETIAAEDILHDMGAISIISSDSQAMGR-I-GEVISRTWQT 647 (742)
Q Consensus 587 -~v~hhl~~~~~edia~a~~Rir----------------~~t~a~~~~L~d~Gv~~~lgSDs~a~gr-~-ge~i~~~~~~ 647 (742)
+.+....+.....-.+++.+.. ...-..++.+.+ +.+ +++||+.+... . -..+...|..
T Consensus 311 ~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-p~~-~i~sD~~p~~~~~~~~~~~~~~~~ 388 (509)
T PRK09061 311 SLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVLF-PGA-AIASDAMPWTWSDGTVYEGDAWPL 388 (509)
T ss_pred HheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhCC-CCc-eEecCCcccccccccccccccccc
Confidence 0000011111010011111100 001224445544 666 99999854210 0 0011111211
Q ss_pred hhhhhh-hc--cccC--CCcc--cCCCCcHHHHHHHHHHHHHHHcC-----CCCCcccccCCCcceEEEECCCCCC----
Q 004611 648 AHKMKS-QR--GSFG--PSAA--DNDNLRIRRYIAKYTINPAIANG-----FSQFVGSVEVGKLADLVLWKPSFFG---- 711 (742)
Q Consensus 648 ~~~m~~-~~--~~L~--~~~~--~~~gl~~~~aL~~aTiNpA~~lG-----l~d~vGSIe~GK~ADLVV~Dp~~~~---- 711 (742)
...+.. .+ +.+. .... ....++++++++++|.+||++|| +++ .|+|++|+.|||||||++.+.
T Consensus 389 ~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg~~~~~l~~-~G~i~~G~~ADlvv~D~~~~~~~~~ 467 (509)
T PRK09061 389 PEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQILEDSVPAMRR-KGRLQAGADADIVVFDPETITDRAT 467 (509)
T ss_pred ccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccccccccC-CEeeCCCCCcCEEEEchhhcccccc
Confidence 111100 00 0000 0000 12359999999999999999999 765 699999999999999987431
Q ss_pred --------CCceEEEECCEEEeccC
Q 004611 712 --------AKPEMVIKGGAIAWANM 728 (742)
Q Consensus 712 --------~~p~~Vi~~G~iV~~~~ 728 (742)
..+++||++|+++|.+.
T Consensus 468 ~~~~~~~~~gi~~v~v~G~~v~~~g 492 (509)
T PRK09061 468 FEDPNRPSEGVRHVLVNGVPVVSNG 492 (509)
T ss_pred ccccCCCCCCceEEEECCEEEEECC
Confidence 14789999999999863
No 62
>PRK08204 hypothetical protein; Provisional
Probab=99.94 E-value=1.5e-24 Score=245.32 Aligned_cols=334 Identities=19% Similarity=0.209 Sum_probs=199.7
Q ss_pred ccEEEEecEEEcCCC----ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC
Q 004611 334 LDTVITNAVIIDHTG----IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC 409 (742)
Q Consensus 334 ~dlVI~Na~Iid~~g----i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~ 409 (742)
.+++|+|+.|++.++ +.+++|.|+||+|++||+... .++.++||+.|++|+|||||+|+|+..
T Consensus 2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~-------------~~~~~viD~~g~~v~PGlId~H~H~~~ 68 (449)
T PRK08204 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIE-------------APDAEVVDARGMIVMPGLVDTHRHTWQ 68 (449)
T ss_pred CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCC-------------CCCCeEEeCCCCEEecCEEeeeeccch
Confidence 467999999997443 456899999999999998522 135689999999999999999999730
Q ss_pred ----------------------------chH--------HHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHh
Q 004611 410 ----------------------------PQL--------AHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQS 453 (742)
Q Consensus 410 ----------------------------P~~--------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a 453 (742)
++. ..+++.+|+||+...+. ...........+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~----------~~~~~~~~~~~~~~ 138 (449)
T PRK08204 69 SVLRGIGADWTLQTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSH----------INNSPEHADAAIRG 138 (449)
T ss_pred hhhccccCCCcHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeeccc----------ccCChhHHHHHHHH
Confidence 011 12344444444443211 01122333444444
Q ss_pred cCCCCceE--ee--cCCCC-------CCChHHH---HHHHHhcC-----ceeEeccCCCCCHHHHHHHHHHHHHcCCEEE
Q 004611 454 TDDLPLNF--GF--TGKGN-------SAKPDEL---HEIIKAGA-----MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVN 514 (742)
Q Consensus 454 ~~~~~vn~--g~--~~~g~-------~~~~~~l---~e~i~aGa-----~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~ 514 (742)
....+++. +. ...+. ....+.+ .+++..++ .++..+....++++.+..+++.|+++|+++.
T Consensus 139 ~~~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~ 218 (449)
T PRK08204 139 LAEAGIRAVFAHGSPGPSPYWPFDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPIS 218 (449)
T ss_pred HHHcCCeEEEEccccCCCCCCCcchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEE
Confidence 44444332 11 11100 0112222 23332222 1344555566789999999999999999999
Q ss_pred EEcC-CCc--cchHHHHHHHHh-cCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEee
Q 004611 515 IHTD-TLN--ESGFVEHTIAAF-KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCH 590 (742)
Q Consensus 515 iH~d-tln--e~g~ve~~l~a~-~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~h 590 (742)
+|+. +.. ....++...+.. .+....+.|.... .++.++.+++.++..+.+ |.
T Consensus 219 ~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~----~~~~~~~la~~g~~v~~~-P~------------------- 274 (449)
T PRK08204 219 MHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDL----SDDELKLLADSGGSFSVT-PE------------------- 274 (449)
T ss_pred EEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCC----CHHHHHHHHHcCCCEEEC-hH-------------------
Confidence 9993 211 122344443322 2333445565543 467788887777643322 10
Q ss_pred ccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh-hhccccC--C-CcccCC
Q 004611 591 HLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK-SQRGSFG--P-SAADND 666 (742)
Q Consensus 591 hl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~-~~~~~L~--~-~~~~~~ 666 (742)
.+ .+ ......+...+.+.|+.+.+|||+...+. .+.+...+......+ ....... . ......
T Consensus 275 -~~-----------~~-~g~~~~~~~~~~~~Gv~v~lGtD~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 340 (449)
T PRK08204 275 -IE-----------MM-MGHGYPVTGRLLAHGVRPSLGVDVVTSTG-GDMFTQMRFALQAERARDNAVHLREGGMPPPRL 340 (449)
T ss_pred -HH-----------hh-hcCCCCcHHHHHhcCCceeeccccCCCCC-cCHHHHHHHHHHHHHhhcccccccccccCCCcC
Confidence 00 00 11234456678888999999999743211 112211111110000 0000000 0 000235
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC-----------------CCCceEEEECCEEEeccC
Q 004611 667 NLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF-----------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 667 gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~-----------------~~~p~~Vi~~G~iV~~~~ 728 (742)
++++.++|+++|+|+|+++|+++++|+|++||.||||+||.+.+ ..++..||++|++||.+.
T Consensus 341 ~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld~~~~~~~p~~dp~~~lv~~~~~~~v~~v~v~G~~v~~~~ 419 (449)
T PRK08204 341 TLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAPVHDPVGAVVQSAHPGNVDSVMVAGRAVKRNG 419 (449)
T ss_pred CCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCccccCCcChhhhheeccCCCCceEEEECCEEEEECC
Confidence 89999999999999999999998899999999999999997632 248999999999999863
No 63
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=1.9e-25 Score=248.30 Aligned_cols=326 Identities=24% Similarity=0.216 Sum_probs=196.3
Q ss_pred ccEEEEecEEEcCCC-ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc--
Q 004611 334 LDTVITNAVIIDHTG-IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP-- 410 (742)
Q Consensus 334 ~dlVI~Na~Iid~~g-i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P-- 410 (742)
..+++.+++.++..+ +.++.|+|+||||+.||+.. . ..+++.++||++|++|||||||+|+|+...
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~~v~i~~GkI~~vg~~~-~----------~~~~~~~viD~~G~~V~PGLID~HtHl~~~~~ 78 (406)
T COG1228 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEE-I----------DIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGS 78 (406)
T ss_pred hhheeeccccCCCcceeecceEEEECCEEEEecCcc-c----------CCCCCCeEEeCCCCEEccceeeccccccccCC
Confidence 356788888887444 56699999999999999863 1 125678999999999999999999998310
Q ss_pred ---hH-----------------HHHHHHHHHHHHHhCCC---C-----------CCCCCcccccCCChHHHHHHHHhcC-
Q 004611 411 ---QL-----------------AHDAIASGITTLVGGGT---G-----------PADGTRATTCTPAPSQMKLMLQSTD- 455 (742)
Q Consensus 411 ---~~-----------------~~~al~~GvTTl~~gGt---g-----------p~~~~~~~~~t~~~~~i~~~l~a~~- 455 (742)
++ ....+..|+|++.++|. . ...+..-.........-..+++...
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~ 158 (406)
T COG1228 79 RGGEFELREAGASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAG 158 (406)
T ss_pred ccchhhhcccCccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhh
Confidence 00 13455566666665553 0 0111111111111111111222111
Q ss_pred ---CCCceEeecCCCCC-------CChHHHHHH----HHhc-CceeEec-----cCCCCCHHHHHHHHHHHHHcCCEEEE
Q 004611 456 ---DLPLNFGFTGKGNS-------AKPDELHEI----IKAG-AMGLKLH-----EDWGSTPAAIDNCLTVAEEYDIQVNI 515 (742)
Q Consensus 456 ---~~~vn~g~~~~g~~-------~~~~~l~e~----i~aG-a~glkl~-----~d~~~t~~~l~~~l~~A~e~g~~v~i 515 (742)
..++.++.+..... ...+.+.+. ++.- ..++... +.-..+++++.+++..|.+.++++.+
T Consensus 159 ~~~~~~~~~~~t~~~~~~~~~~~~~~r~~~~~g~~~~i~~~a~~~l~~~~d~~~~~~~fs~~e~~~~l~~a~~~g~~v~~ 238 (406)
T COG1228 159 LKESRPVAVGSTPLAAHGVPEERKATREAYVAGARLLIKIVATGGLASFVDAFCEGGQFSPEEIRAVLAAALKAGIPVKA 238 (406)
T ss_pred ccccccccccCccccccCCcccccchHHHHHHHHHHHHHHHHhccccchhhccccccccCHHHHHHHHHHHHHCCCceEE
Confidence 12233332222111 111222111 2110 0122222 23467999999999999999999999
Q ss_pred EcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhh--cCc-ccCCCCCCCCCcchhhhhhcceEEEeecc
Q 004611 516 HTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGV--KNV-LPSSTNPTRPYTSNTIDEHLDMLMVCHHL 592 (742)
Q Consensus 516 H~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~--~~v-lpsstnp~~p~t~~tl~e~ld~l~v~hhl 592 (742)
|++.... +.-.++.......|..+. ..+.++...+ .+. .|... |-+.
T Consensus 239 HA~~~~g---~~~A~~~g~~s~~H~~~l-------d~~~~~~~a~~~~g~~~~~l~----p~~~---------------- 288 (406)
T COG1228 239 HAHGADG---IKLAIRLGAKSAEHGTLL-------DHETAALLAEKGAGTPVPVLL----PRTK---------------- 288 (406)
T ss_pred Eecccch---HHHHHHhCcceehhhhhc-------CHhHHHHHhhccCCCcccccc----chhh----------------
Confidence 9976552 444444434444444443 2455555555 221 11100 0000
Q ss_pred CCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHH
Q 004611 593 HKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRR 672 (742)
Q Consensus 593 ~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~ 672 (742)
--++.......+.|.+.|+.++++||+..... ....+..+.-+ ...+++++|
T Consensus 289 ------------~~l~e~~~~~~~~l~~~GV~vai~TD~~~~~~----~~~l~~~m~l~------------~~~gmtp~E 340 (406)
T COG1228 289 ------------FELRELDYKPARKLIDAGVKVAIGTDHNPGTS----HGSLALEMALA------------VRLGMTPEE 340 (406)
T ss_pred ------------hhhhcccchhHHHHHHCCCEEEEEcCCCCCch----hhHHHHHHHHH------------HHcCCCHHH
Confidence 01233334556788999999999999864331 11111111111 133699999
Q ss_pred HHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC--------CCCceEEEECCEEEeccC
Q 004611 673 YIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF--------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 673 aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~--------~~~p~~Vi~~G~iV~~~~ 728 (742)
+|+++|+|||++||+++++||||+||.|||||||.+++ ..++.+||++|+++|...
T Consensus 341 aL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i~y~~~~~~v~~v~k~G~~~~~~~ 404 (406)
T COG1228 341 ALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDPLADIPYFLGLNKVEAVIKDGKVVYERG 404 (406)
T ss_pred HHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCChhhccccccCCceEEEEECCEEeecCC
Confidence 99999999999999999999999999999999998873 248999999999999653
No 64
>PRK06380 metal-dependent hydrolase; Provisional
Probab=99.94 E-value=5.9e-25 Score=246.54 Aligned_cols=326 Identities=18% Similarity=0.189 Sum_probs=190.0
Q ss_pred ccEEEEecEEEcCCC---ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC-
Q 004611 334 LDTVITNAVIIDHTG---IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC- 409 (742)
Q Consensus 334 ~dlVI~Na~Iid~~g---i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~- 409 (742)
|+++|+|++|++.++ +.+++|.|+||+|++||+... ...++||+.|++|+|||||+|+|+..
T Consensus 1 m~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~--------------~~~~viD~~g~~v~PG~Vd~H~Hl~~~ 66 (418)
T PRK06380 1 MSILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE--------------EADYIIDATGKVVMPGLINTHAHVGMT 66 (418)
T ss_pred CeEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC--------------CCCEEEECCCCEEccCEEeeccCCCcc
Confidence 468999999997542 567899999999999998421 24589999999999999999999620
Q ss_pred --------------------------chHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEee
Q 004611 410 --------------------------PQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGF 463 (742)
Q Consensus 410 --------------------------P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~ 463 (742)
++........++..++..|++-+. +.........++....+++..+
T Consensus 67 ~~rg~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~--------d~~~~~~~~~~a~~~~G~r~~~ 138 (418)
T PRK06380 67 ASKGLFDDVDLEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFV--------DLYYSEDIIAKAAEELGIRAFL 138 (418)
T ss_pred ccCCcccCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEE--------ccccChHHHHHHHHHhCCeEEE
Confidence 111122334455556666663110 0001123344455555554322
Q ss_pred c----CCCC-CC---ChHHHHHHHH---h-cC--ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHH
Q 004611 464 T----GKGN-SA---KPDELHEIIK---A-GA--MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHT 529 (742)
Q Consensus 464 ~----~~g~-~~---~~~~l~e~i~---a-Ga--~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~ 529 (742)
. .... .. ..+...++++ . +. .++.++..+.++++.++.+.++|+++|+++++|+....+ .+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~--~~~~~ 216 (418)
T PRK06380 139 SWAVLDEEITTQKGDPLNNAENFIREHRNEELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRK--EVYDH 216 (418)
T ss_pred ecccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHH--HHHHH
Confidence 1 1100 00 0111222222 1 11 255677788899999999999999999999999943211 12211
Q ss_pred HHHhc-------------CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCc
Q 004611 530 IAAFK-------------GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDI 596 (742)
Q Consensus 530 l~a~~-------------g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~ 596 (742)
..... +...-..|.... .++.++..++.++..+ .|...
T Consensus 217 ~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l----~~~d~~~la~~g~~v~---------------------~~P~s---- 267 (418)
T PRK06380 217 VKRTGERPVEHLEKIGFLNSKLIAAHCVWA----TYHEIKLLSKNGVKVS---------------------WNSVS---- 267 (418)
T ss_pred HHHhCCCHHHHHHHCCCCCCCeEEEEeecC----CHHHHHHHHHcCCEEE---------------------ECHHH----
Confidence 11111 111122222221 2444555555443211 11000
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHH
Q 004611 597 PEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAK 676 (742)
Q Consensus 597 ~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~ 676 (742)
..++....+++...+.+.|+.+++|||+..+....+.+...+......+. ..+ ....+++.++|++
T Consensus 268 -------n~~l~~~g~~p~~~~~~~Gv~v~lGTD~~~~~~~~d~~~~~~~~~~~~~~----~~~---~~~~~~~~~~l~~ 333 (418)
T PRK06380 268 -------NFKLGTGGSPPIPEMLDNGINVTIGTDSNGSNNSLDMFEAMKFSALSVKN----ERW---DASIIKAQEILDF 333 (418)
T ss_pred -------HHhhccCCCCcHHHHHHCCCeEEEcCCCCcCCCCcCHHHHHHHHHHHhhh----ccC---CCCcCCHHHHHHH
Confidence 00111123556677888899999999975332111111111110000000 001 1225899999999
Q ss_pred HHHHHHHHcCCCCCcccccCCCcceEEEECCC-----CC--------------CCCceEEEECCEEEeccC
Q 004611 677 YTINPAIANGFSQFVGSVEVGKLADLVLWKPS-----FF--------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 677 aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~-----~~--------------~~~p~~Vi~~G~iV~~~~ 728 (742)
+|.|+|+++|++ +|+|++||.||||++|.+ +. ..++..||++|++++++.
T Consensus 334 aT~~gA~~lg~~--~G~l~~G~~ADlvv~d~~~~~~~p~~~~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g 402 (418)
T PRK06380 334 ATINAAKALELN--AGSIEVGKLADLVILDARAPNMIPTRKNNIVSNIVYSLNPLNVDHVIVNGKILKENG 402 (418)
T ss_pred HHHHHHHHhCCC--CCccCCCccCCEEEEeCCCCccCCCCccChHHheeecCCCCceeEEEECCEEEEECC
Confidence 999999999994 899999999999999965 21 137899999999999863
No 65
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.5e-25 Score=250.56 Aligned_cols=337 Identities=23% Similarity=0.316 Sum_probs=236.3
Q ss_pred cccccccccCCCCCCCcccEEEEecEEEc-CCC-ceeeEEEEECCEEEEE-ecCCCCCcccCCCCccccCCCceEEecCC
Q 004611 317 VIREGMGQACGHHYAKSLDTVITNAVIID-HTG-IFKADIGIKNGLIVAL-GKAGNPDIMNDVHPNMIIGANTEVIAGER 393 (742)
Q Consensus 317 ~~r~~~~~~~~~~~~~~~dlVI~Na~Iid-~~g-i~~adI~IkdGrIv~I-G~~~~~~~~~~~~~~~~~~~~teVIDa~G 393 (742)
.+|+...++.++.+ +|++++|++|+| .++ ++++||+|.+|||++| ++.. .+++++||+.|
T Consensus 10 ~~~~~v~va~G~~~---adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~--------------~e~~~~iDa~g 72 (584)
T COG1001 10 DLRRLVAVARGRAK---ADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR--------------AEATEVIDAAG 72 (584)
T ss_pred HHHHHHHHHcCCCC---CCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC--------------cccceeecCCC
Confidence 46777777777554 899999999999 565 8999999999999995 4421 47889999999
Q ss_pred CEEeecceeeccCCC----Cc-hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCC
Q 004611 394 FIVTAGAIDCHVHFI----CP-QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGN 468 (742)
Q Consensus 394 ~iVtPGfID~HvH~~----~P-~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~ 468 (742)
++|.|||||+|+|+- .| +++...+..|+||++. .|++..|. .+...++.|++..+..|+++.+..+++
T Consensus 73 ~yivPGfID~H~HIESSm~tP~~FA~~Vlp~GtTtvV~---DPHEIaNV----~G~~Gi~~ml~~a~~~pl~~~~~~pSc 145 (584)
T COG1001 73 RYIVPGFIDAHLHIESSMLTPSEFARAVLPHGTTTVVS---DPHEIANV----LGEDGIRFMLDEAKETPLKVYVMLPSC 145 (584)
T ss_pred CEeccceeecceeccccccCHHHHHHHhhccCceEEee---CcHHHHhh----ccHHHHHHHHHHHhhCCeEEEEecccC
Confidence 999999999999974 34 4678999999999986 67766663 578899999999999999998876654
Q ss_pred CC-----------ChHHHHHHHH-hcCceeEeccCCC---CCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHh
Q 004611 469 SA-----------KPDELHEIIK-AGAMGLKLHEDWG---STPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAF 533 (742)
Q Consensus 469 ~~-----------~~~~l~e~i~-aGa~glkl~~d~~---~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~ 533 (742)
-+ ..+.++++++ ..+.|+.-.++|. ..+..+...++.+++++..+.-|+..+... .+.++
T Consensus 146 VPat~~Et~Ga~l~a~~i~e~~~~p~Vigl~E~Mn~pgVi~~D~~~l~kl~a~~~~~k~VdGHapgl~g~-----~Ln~Y 220 (584)
T COG1001 146 VPATPFETSGAELTAEDIKELLEHPEVIGLGEMMNFPGVIEGDPDMLAKLEAARKAGKPVDGHAPGLSGK-----ELNAY 220 (584)
T ss_pred ccCCccccCCceecHHHHHHHhhCCCccchhhhcCCchhccCCHHHHHHHHHHHHcCCeecccCCCCChH-----HHHHH
Confidence 32 2455666664 3456777777773 455667778899999999999999765532 23333
Q ss_pred cCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcce-EEEeeccCCCchHHHHHhhhhhhhhhh
Q 004611 534 KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDM-LMVCHHLHKDIPEDVAFAESRIRAETI 612 (742)
Q Consensus 534 ~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~-l~v~hhl~~~~~edia~a~~Rir~~t~ 612 (742)
...-+...|.... ..|.++..+ ++| +|+-+.... ....
T Consensus 221 ~aaGi~tDHE~~t----~EEa~~klr-----------------------~Gm~i~iReGS~a--------------~dl~ 259 (584)
T COG1001 221 IAAGISTDHESTT----AEEALEKLR-----------------------LGMKIMIREGSAA--------------KDLA 259 (584)
T ss_pred HhcCCCcCcccCC----HHHHHHHHh-----------------------CCcEEEEEcCchh--------------hhHH
Confidence 3333344443321 123333322 233 333322211 1112
Q ss_pred hHHHHHHHCC-CeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCc
Q 004611 613 AAEDILHDMG-AISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFV 691 (742)
Q Consensus 613 a~~~~L~d~G-v~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~v 691 (742)
.....+.+.| -.++++||...+.-+- ..- ..+.+.. .+.+.|+.+.++++|+|+|||+.+|+++ +
T Consensus 260 ~l~~~i~e~~~~~~~lcTDD~~p~dl~---~eG--hld~~vR--------~Ai~~Gv~p~~a~qmAtiN~A~~~gl~~-~ 325 (584)
T COG1001 260 ALLPAITELGSRRVMLCTDDRHPDDLL---EEG--HLDRLVR--------RAIEEGVDPLDAYQMATINPAEHYGLDD-L 325 (584)
T ss_pred HHHHHHhhcCCceEEEECCCCChhHhh---hcC--CHHHHHH--------HHHHcCCCHHHHHHHHhcCHHHHcCCcc-c
Confidence 3344566667 4788999975433110 000 0011111 0135699999999999999999999988 9
Q ss_pred ccccCCCcceEEEECCCCCCCCceEEEECCEEEeccCCCCCCCCCCC
Q 004611 692 GSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTP 738 (742)
Q Consensus 692 GSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~g~~~~~~~~~ 738 (742)
|.|.||..||||+++ +....++..|+++|+++..+.......++.+
T Consensus 326 G~iAPG~~ADlvi~~-DL~~~~v~~V~~~G~~v~~~g~~l~~~~~~~ 371 (584)
T COG1001 326 GLIAPGRRADLVILE-DLRNFKVTSVLIKGRVVAEDGKALIKDIKFP 371 (584)
T ss_pred ccccCCccccEEEEc-ccccCceeEEEECCEEEecCCceeccccccC
Confidence 999999999999998 5566889999999999998775454444444
No 66
>PRK09356 imidazolonepropionase; Validated
Probab=99.94 E-value=8.9e-25 Score=243.96 Aligned_cols=330 Identities=22% Similarity=0.248 Sum_probs=189.0
Q ss_pred cccEEEEecEEEcCCC--------ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeec
Q 004611 333 SLDTVITNAVIIDHTG--------IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCH 404 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~g--------i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~H 404 (742)
+++++|+|++|++.++ +.+++|.|+||||++||+..... .....++||+.|++|+|||||+|
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~----------~~~~~~~iD~~g~~v~PG~id~H 71 (406)
T PRK09356 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLP----------AAYAAEVIDAGGKLVTPGLIDCH 71 (406)
T ss_pred CceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCccccc----------cccCceEEECCCCEEeeceEecC
Confidence 5789999999998542 34689999999999999853311 11236899999999999999999
Q ss_pred cCCCCch-----H---------------------------------HHHHHHHHHHHHHhCCCCCCCCCcccccCC--Ch
Q 004611 405 VHFICPQ-----L---------------------------------AHDAIASGITTLVGGGTGPADGTRATTCTP--AP 444 (742)
Q Consensus 405 vH~~~P~-----~---------------------------------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~--~~ 444 (742)
+|+.... . .......+...++..|++-+.......... ..
T Consensus 72 ~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~ 151 (406)
T PRK09356 72 THLVFGGNRANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETEL 151 (406)
T ss_pred CCcccCCCcHHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHH
Confidence 9974210 0 000012222333445552111000000000 00
Q ss_pred HHHHHHHHhcCCCCceEe--ecC-CC----CCCChH----H----HHHHH-Hh-cCceeEe-ccCCCCCHHHHHHHHHHH
Q 004611 445 SQMKLMLQSTDDLPLNFG--FTG-KG----NSAKPD----E----LHEII-KA-GAMGLKL-HEDWGSTPAAIDNCLTVA 506 (742)
Q Consensus 445 ~~i~~~l~a~~~~~vn~g--~~~-~g----~~~~~~----~----l~e~i-~a-Ga~glkl-~~d~~~t~~~l~~~l~~A 506 (742)
..++...+...+.++.+. +.+ .. ...... . +.+.+ .. ++..++. ......+++.+.++++.|
T Consensus 152 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~A 231 (406)
T PRK09356 152 KMLRVARRLGEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCETGAFSVEQSERVLEAA 231 (406)
T ss_pred HHHHHHHHHhhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEecCCCCCHHHHHHHHHHH
Confidence 112222222222222222 111 01 001111 1 11111 11 2334443 223456799999999999
Q ss_pred HHcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceE
Q 004611 507 EEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDML 586 (742)
Q Consensus 507 ~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l 586 (742)
+++|+++.+|+......+.++.......-...|..+. .++.++..++.++.++.+ |...+
T Consensus 232 ~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~H~~~~-------~~~~~~~la~~g~~~~~~-P~~~~------------ 291 (406)
T PRK09356 232 KALGLPVKIHAEQLSNLGGAELAAEYGALSADHLEYL-------DEAGIAAMAEAGTVAVLL-PGAFY------------ 291 (406)
T ss_pred HHCCCCEEEEEecccCCCHHHHHHHcCCcEehHhhcC-------CHHHHHHHHHhCCEEEEC-ccchh------------
Confidence 9999999999953222222333332211122333332 366777777766543222 11000
Q ss_pred EEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCc-cCccchhhhhhhhhhhhhhhhccccCCCcccC
Q 004611 587 MVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQA-MGRIGEVISRTWQTAHKMKSQRGSFGPSAADN 665 (742)
Q Consensus 587 ~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a-~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~ 665 (742)
++......+...+.+.|+++++|||+.+ .... ...+....... ..
T Consensus 292 -------------------~l~~~~~~~~~~l~~~Gi~v~lgtD~~~~~~~~----~~~~~~~~~~~-----------~~ 337 (406)
T PRK09356 292 -------------------FLRETQYPPARLLRDAGVPVALATDFNPGSSPT----ESLLLAMNMAC-----------TL 337 (406)
T ss_pred -------------------hcCcccCchHHHHHHCCCeEEEeCCCCCCCChh----HHHHHHHHHHh-----------hh
Confidence 0011223456677788999999999732 1100 01111000000 13
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC--------CCCceEEEECCEEEec
Q 004611 666 DNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF--------GAKPEMVIKGGAIAWA 726 (742)
Q Consensus 666 ~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~--------~~~p~~Vi~~G~iV~~ 726 (742)
.++++.++++++|.|||+++|+++++|+|++||.||||++|.+++ ..++..||++|++||.
T Consensus 338 ~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~~~~~~~~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 338 FRLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAELPYHFGVNPVETVVKNGEVVVD 406 (406)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEECCCchhhhhhhhCCCCccEEEECCEEeeC
Confidence 478999999999999999999998899999999999999998864 2479999999999984
No 67
>PRK01211 dihydroorotase; Provisional
Probab=99.94 E-value=2.2e-25 Score=248.88 Aligned_cols=334 Identities=18% Similarity=0.159 Sum_probs=219.6
Q ss_pred EEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH-HHH
Q 004611 337 VITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL-AHD 415 (742)
Q Consensus 337 VI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~-~~~ 415 (742)
.|.|..+.+ ..+..++|.|+||||++|++.. .+.++||++| +|+|||||+|+|+..|.+ .++
T Consensus 2 ~~~~~~~~~-~~~~~~di~I~dGkI~~i~~~~---------------~~~~~ida~g-~vlPG~ID~HvH~r~pg~~~ke 64 (409)
T PRK01211 2 AICGNFYYK-GKFDYLEIEVEDGKIKSIKKDA---------------GNIGKKELKG-AILPAATDIHVHFRTPGETEKE 64 (409)
T ss_pred eeeceeEEc-CcEEEEEEEEECCEEEEecCCC---------------CCceEEEecc-EEcCCeEEeeeccCCCCCcccC
Confidence 356655444 3577799999999999998631 2457899999 999999999999998764 588
Q ss_pred HHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCC
Q 004611 416 AIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWG 493 (742)
Q Consensus 416 al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~ 493 (742)
.+.+|+..++.||++ ..+.++..+.......+....+..+. ..++|++++...... . ++.+.|+.++|.+....
T Consensus 65 d~~s~s~AAaaGGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~-~---~~~~~g~~~~k~f~~~~ 140 (409)
T PRK01211 65 DFSTGTLSAIFGGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNN-A---LILDERSIGLKVYMGGT 140 (409)
T ss_pred cHHHHHHHHHcCCcEEEEECCCCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCch-h---hHHhccCcEEEEEcCCC
Confidence 999999999999984 66677755566677777777766544 478898886653322 2 23345889999876421
Q ss_pred C-CH--HHHHHHHHHHHHcCCEEEEEcCCCc--cchH----------------HHH----HHHHhcCCeEEEEecccCCC
Q 004611 494 S-TP--AAIDNCLTVAEEYDIQVNIHTDTLN--ESGF----------------VEH----TIAAFKGRTIHTYHSEGAGG 548 (742)
Q Consensus 494 ~-t~--~~l~~~l~~A~e~g~~v~iH~dtln--e~g~----------------ve~----~l~a~~g~~ih~~H~~gagg 548 (742)
. .. ...+..++.+.+.|..+.+|++... ..+. .|. .+..+....+|+.|.....+
T Consensus 141 ~~~~~~~~~~~~l~~~~~~g~~v~~H~E~~~l~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~hi~HvSt~~~ 220 (409)
T PRK01211 141 TNTNGTDIEGGEIKKINEANIPVFFHAELSECLRKHQFESKNLRDHDLARPIECEIKAVKYVKNLDLKTKIIAHVSSIDV 220 (409)
T ss_pred cCCCccccCHHHHHHHHccCCEEEEeccChHHhhhhhhCcchHhhCCCCCCHHHHHHHHHHHHHHhCCCcEEEEecChhh
Confidence 0 10 1223456777799999999996321 0000 000 00111222567777665332
Q ss_pred CCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHH-HHhhh----hhhhhhhhHHHHHHHCCC
Q 004611 549 GHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDV-AFAES----RIRAETIAAEDILHDMGA 623 (742)
Q Consensus 549 ghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edi-a~a~~----Rir~~t~a~~~~L~d~Gv 623 (742)
+ .++++++ .+|||..+..... .+++. |-+.+..++++.|.+ |.
T Consensus 221 ------~----------------~~vt~Ev---------~phhL~l~~~~~~~~~~kvnPPLRs~~d~~aL~~~l~d-G~ 268 (409)
T PRK01211 221 ------I----------------GRFLREV---------TPHHLLLNDDMPLGSYGKVNPPLRDRWTQERLLEEYIS-GR 268 (409)
T ss_pred ------c----------------CceEEEe---------cHHHHccccccccCCceeEcCCCCCHHHHHHHHHHHhC-CC
Confidence 1 0233332 3477755432210 01111 234556789999988 99
Q ss_pred eEEEecCCCccCccchhhhhhhhhhhhhh--hhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcce
Q 004611 624 ISIISSDSQAMGRIGEVISRTWQTAHKMK--SQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLAD 701 (742)
Q Consensus 624 ~~~lgSDs~a~gr~ge~i~~~~~~~~~m~--~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~AD 701 (742)
+.+++||+.+.. ..+. ...|..+..+. +...++.+....+.+++++++++++|.|||+++|+. .|+|++|+.||
T Consensus 269 ID~i~SDHaP~~-~~eK-~~~~~a~~G~~gle~~lpl~~~~v~~~~isl~~~v~~~s~nPAki~gl~--kG~l~~G~~AD 344 (409)
T PRK01211 269 FDILSSDHAPHT-EEDK-QEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAIERPASLFGIK--KGKIEEGYDAD 344 (409)
T ss_pred CCEEeCCCCCCC-hhHh-CCHhhCCCCCCcHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCC
Confidence 999999986542 3232 22444333332 223333332224567999999999999999999994 69999999999
Q ss_pred EEEECCCC-----------------CC-C---CceEEEECCEEEecc
Q 004611 702 LVLWKPSF-----------------FG-A---KPEMVIKGGAIAWAN 727 (742)
Q Consensus 702 LVV~Dp~~-----------------~~-~---~p~~Vi~~G~iV~~~ 727 (742)
|||||++. |. . +|..||++|+++|.+
T Consensus 345 lvi~D~~~~~~v~~~~~~s~~~~spf~G~~~~~v~~tiv~G~~v~~~ 391 (409)
T PRK01211 345 FMAFDFTNIKKINDKRLHSKCPVSPFNGFDAIFPSHVIMRGEVVIDN 391 (409)
T ss_pred EEEEcCCCeEEEChHHhhccCCCCCCCCCEeccEEEEEECCEEEEEC
Confidence 99999763 10 1 588999999999975
No 68
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=99.94 E-value=5.1e-25 Score=243.84 Aligned_cols=331 Identities=21% Similarity=0.261 Sum_probs=202.8
Q ss_pred EEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC------c
Q 004611 337 VITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC------P 410 (742)
Q Consensus 337 VI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~------P 410 (742)
+|+|++|++.+++..++|.|+||+|++|++... ...++||++|++|+|||||+|+|+.. |
T Consensus 1 ~i~~~~vv~~~~~~~~~i~i~dg~I~~i~~~~~--------------~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp 66 (376)
T TIGR02318 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPV--------------ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRP 66 (376)
T ss_pred CEeCeEEECCCceEeeeEEEECCEEEEecCCCC--------------CCCceEeCCCCEEeccEEEcccCccccCcCCCC
Confidence 589999999888777899999999999987421 24568999999999999999999865 4
Q ss_pred hH---HHHHHHHHHHHHHhCCCC-CCCCCc-c--cccCCChHHHHHHH---HhcC-C--CCceEeecCCC---CCCChHH
Q 004611 411 QL---AHDAIASGITTLVGGGTG-PADGTR-A--TTCTPAPSQMKLML---QSTD-D--LPLNFGFTGKG---NSAKPDE 474 (742)
Q Consensus 411 ~~---~~~al~~GvTTl~~gGtg-p~~~~~-~--~~~t~~~~~i~~~l---~a~~-~--~~vn~g~~~~g---~~~~~~~ 474 (742)
.. ..+++..+...++.+|++ ..+.+. . ...+.....++.++ ++.. + ..+++++++.. .....+.
T Consensus 67 ~~~~~~~~~~~~~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~ 146 (376)
T TIGR02318 67 GVDWPIDAAIVEHDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPE 146 (376)
T ss_pred CCCcchHHHHHHHHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHH
Confidence 32 236666666666666653 222221 1 12334556666666 4433 2 45788888766 4455778
Q ss_pred HHHHHHhcCceeEeccCC------CCCHHHHHHHHHHHHHcCCEEEEEcCCCcc--------chH----HHHHH--HHhc
Q 004611 475 LHEIIKAGAMGLKLHEDW------GSTPAAIDNCLTVAEEYDIQVNIHTDTLNE--------SGF----VEHTI--AAFK 534 (742)
Q Consensus 475 l~e~i~aGa~glkl~~d~------~~t~~~l~~~l~~A~e~g~~v~iH~dtlne--------~g~----ve~~l--~a~~ 534 (742)
+.++.+.|..++|.+++. ..++..+.+.+.. +.| ..|.+.... ..+ +.... +.-.
T Consensus 147 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~~~~~~~~~~e~i~~~v~~A~~~ 221 (376)
T TIGR02318 147 LEELIDDPRVDLISLMDHTPGQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEERIARRAEYGLANRSEIAALARAR 221 (376)
T ss_pred HHHHhcCCCcCEEEEeCCCCCcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHC
Confidence 888888999999998764 2344444444322 333 445531100 001 11111 1123
Q ss_pred CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhh--cce-EEEeeccCCCchHHHHHhhhhhhhhh
Q 004611 535 GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEH--LDM-LMVCHHLHKDIPEDVAFAESRIRAET 611 (742)
Q Consensus 535 g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~--ld~-l~v~hhl~~~~~edia~a~~Rir~~t 611 (742)
|.++ ..|.. ..++.+..+...++..+.. |.+.++..+. .++ +..|. ++.. +.......
T Consensus 222 G~~v-~sH~~-----~~~e~i~~a~~~Gv~~~E~----~~t~e~a~~~~~~G~~v~~~~---p~~~------r~~~~~~~ 282 (376)
T TIGR02318 222 GIPL-ASHDD-----DTPEHVAEAHDLGVTISEF----PTTLEAAKEARSLGMQILMGA---PNIV------RGGSHSGN 282 (376)
T ss_pred CCeE-EEecC-----CCHHHHHHHHHCCCChhcc----CCCHHHHHHHHHcCCeEEECC---cccc------ccccccch
Confidence 4444 33431 1356666666666644432 3444443332 222 23331 1100 00001112
Q ss_pred hhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCc
Q 004611 612 IAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFV 691 (742)
Q Consensus 612 ~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~v 691 (742)
.++++.+. .|++++++||+.+.. .....|. +.. ...++++.++++++|.|||+++|+++ +
T Consensus 283 ~~l~~~~~-~G~~~~l~SD~~p~~----~l~~~~~----~~~----------~~~gl~~~~al~~~T~npA~~lgl~~-~ 342 (376)
T TIGR02318 283 LSARELAH-EGLLDVLASDYVPAS----LLLAAFQ----LAD----------DVEGIPLPQAVKMVTKNPARAVGLSD-R 342 (376)
T ss_pred HHHHHHHH-CCCcEEEEcCCCcHH----HHHHHHH----HHH----------hhcCCCHHHHHHHHhHHHHHHcCCCC-C
Confidence 34555554 599999999984321 1111111 100 12378999999999999999999974 7
Q ss_pred ccccCCCcceEEEECCCCCCCCceEEEECCEEEe
Q 004611 692 GSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAW 725 (742)
Q Consensus 692 GSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~ 725 (742)
|+|++||.|||++||+.....++..||++|++||
T Consensus 343 G~I~~G~~ADlvvvd~~~~~~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 343 GSIAPGKRADLVRVHRVDGVPRIRAVWRAGRRVY 376 (376)
T ss_pred CcCCCCCcccEEEEcCCCCCccceEEEECCEEeC
Confidence 9999999999999998543347899999999986
No 69
>PRK12393 amidohydrolase; Provisional
Probab=99.93 E-value=9.1e-24 Score=239.77 Aligned_cols=330 Identities=17% Similarity=0.225 Sum_probs=200.0
Q ss_pred cccEEEEecE-EEc-CCC---cee-eEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccC
Q 004611 333 SLDTVITNAV-IID-HTG---IFK-ADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVH 406 (742)
Q Consensus 333 ~~dlVI~Na~-Iid-~~g---i~~-adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH 406 (742)
+.|++|+|+. |++ ..+ +.. ++|.|+||+|++||+. .+ .+++++||+.|++|+|||||+|+|
T Consensus 1 ~~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~~------------~~~~~viD~~g~~v~PG~VnaH~H 67 (457)
T PRK12393 1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-TP------------LPGERVIDATDCVVYPGWVNTHHH 67 (457)
T ss_pred CCcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-CC------------CCCCeEEeCCCCEEecCEeecccC
Confidence 3589999995 676 322 444 4899999999999982 11 356799999999999999999999
Q ss_pred CCC------------------------------chHHHHHHHHHHHHHHhCCCCCC-CCCcccccCCChHHHHHHHHhcC
Q 004611 407 FIC------------------------------PQLAHDAIASGITTLVGGGTGPA-DGTRATTCTPAPSQMKLMLQSTD 455 (742)
Q Consensus 407 ~~~------------------------------P~~~~~al~~GvTTl~~gGtgp~-~~~~~~~~t~~~~~i~~~l~a~~ 455 (742)
+.. ++........++..++.+|++-. +.................+++..
T Consensus 68 l~~~~~rg~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~ 147 (457)
T PRK12393 68 LFQSLLKGVPAGINQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAE 147 (457)
T ss_pred cccccccccccccCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHH
Confidence 620 11122333445555555555311 11000011123344567777777
Q ss_pred CCCceEeecCC---------C------CCCC-hH---HHHHHHH---hc------CceeEeccC-CCCCHHHHHHHHHHH
Q 004611 456 DLPLNFGFTGK---------G------NSAK-PD---ELHEIIK---AG------AMGLKLHED-WGSTPAAIDNCLTVA 506 (742)
Q Consensus 456 ~~~vn~g~~~~---------g------~~~~-~~---~l~e~i~---aG------a~glkl~~d-~~~t~~~l~~~l~~A 506 (742)
..+++..+.-. . .... .+ ..++..+ .+ ..++.+|.. +.++++.+.++.+.|
T Consensus 148 ~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a 227 (457)
T PRK12393 148 ALGMRFVLCRGGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAA 227 (457)
T ss_pred HcCCeEEEEccccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHH
Confidence 77766432100 0 0011 11 1122221 11 123556666 788999999999999
Q ss_pred HHcCCEEEEEcC-CCccchHHHHHHHHhc--------------CC--eEEEEecccCCCCCCHHHHHHhhhcCcccCCCC
Q 004611 507 EEYDIQVNIHTD-TLNESGFVEHTIAAFK--------------GR--TIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTN 569 (742)
Q Consensus 507 ~e~g~~v~iH~d-tlne~g~ve~~l~a~~--------------g~--~ih~~H~~gaggghapdiI~~a~~~~vlpsstn 569 (742)
+++++++.+|+. +..+ ++.....+. .+ ..|..+. .++.++..++.++..+.+
T Consensus 228 ~~~g~~~~~H~~e~~~~---~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l-------~~~d~~~la~~g~~v~~~- 296 (457)
T PRK12393 228 RGMGLRLHSHLSETVDY---VDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKL-------DAEEIALLAQTGTGIAHC- 296 (457)
T ss_pred HHcCCeEEEEeCCCHHH---HHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecC-------CHHHHHHHHHcCCeEEEC-
Confidence 999999999994 3322 333322221 11 2355554 366677766666532211
Q ss_pred CCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhh
Q 004611 570 PTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAH 649 (742)
Q Consensus 570 p~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~ 649 (742)
...+ .++ ...+++...+.+.|+.+++|||+....-..+.+...+..
T Consensus 297 --------------------P~sn-----------~~l-g~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a-- 342 (457)
T PRK12393 297 --------------------PQSN-----------GRL-GSGIAPALAMEAAGVPVSLGVDGAASNESADMLSEAHAA-- 342 (457)
T ss_pred --------------------chhh-----------hhh-cccCCCHHHHHHCCCeEEEecCCcccCCCccHHHHHHHH--
Confidence 1000 111 123456667888899999999975432111111111110
Q ss_pred hhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC-----------------CC
Q 004611 650 KMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF-----------------GA 712 (742)
Q Consensus 650 ~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~-----------------~~ 712 (742)
+..++.. .....++++++++++|.|||+++|+++ +|+|++||.|||+|+|++.. ..
T Consensus 343 -~~~~~~~-----~~~~~~~~~~~l~~~T~~~A~~l~~~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~ 415 (457)
T PRK12393 343 -WLLHRAE-----GGADATTVEDVVHWGTAGGARVLGLDA-IGTLAVGQAADLAIYDLDDPRFFGLHDPAIAPVACGGPA 415 (457)
T ss_pred -HHHhhhc-----CCCCCCCHHHHHHHHhHHHHHHhCCCC-CCCcCCCCcCCEEEEeCCCcccCCCCCchhhhhccCCCC
Confidence 1111100 012368999999999999999999976 89999999999999997631 13
Q ss_pred CceEEEECCEEEecc
Q 004611 713 KPEMVIKGGAIAWAN 727 (742)
Q Consensus 713 ~p~~Vi~~G~iV~~~ 727 (742)
++..||++|+++|++
T Consensus 416 ~v~~v~v~G~~v~~~ 430 (457)
T PRK12393 416 PVKALLVNGRPVVEN 430 (457)
T ss_pred CeeEEEECCEEEEEC
Confidence 789999999999986
No 70
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=99.93 E-value=3.1e-24 Score=245.54 Aligned_cols=331 Identities=16% Similarity=0.133 Sum_probs=192.4
Q ss_pred cEEEEecEEEc--CCC---ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC-
Q 004611 335 DTVITNAVIID--HTG---IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI- 408 (742)
Q Consensus 335 dlVI~Na~Iid--~~g---i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~- 408 (742)
.++|+|+.|++ +.+ +.+++|.|+||+|++||+... ....++||+.|++|+|||||+|+|+.
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~-------------~~~~~viD~~g~~vlPGlVdaH~Hl~~ 68 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFD-------------GEVDRVIDAGNALVGPGFIDLDALSDL 68 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCC-------------CCCCeEEeCCCCEEecCEEeeecccch
Confidence 57999999975 332 355899999999999998421 12458999999999999999999941
Q ss_pred ---------C---------c--------------hH--------HHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHH
Q 004611 409 ---------C---------P--------------QL--------AHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMK 448 (742)
Q Consensus 409 ---------~---------P--------------~~--------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~ 448 (742)
. + +. +.+++++|+||+++.++.. ............
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~-----~~~~~~~~~~~~ 143 (488)
T PRK06151 69 DTTILGLDNGPGWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLF-----YRQWAETYAEFA 143 (488)
T ss_pred hhhhcccccchhHHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhh-----ccccccccchHH
Confidence 0 1 00 2345555666555432210 000011122344
Q ss_pred HHHHhcCCCCceEeecC-----------CCC-------CCCh---HHHHHHH----HhcCc----eeEeccCCCCCHHHH
Q 004611 449 LMLQSTDDLPLNFGFTG-----------KGN-------SAKP---DELHEII----KAGAM----GLKLHEDWGSTPAAI 499 (742)
Q Consensus 449 ~~l~a~~~~~vn~g~~~-----------~g~-------~~~~---~~l~e~i----~aGa~----glkl~~d~~~t~~~l 499 (742)
..+++....+++..+.. .+. .... +...+++ ..|.. .+.++..+.++++.+
T Consensus 144 ~~~~a~~~~GiR~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l 223 (488)
T PRK06151 144 AAAEAAGRLGLRVYLGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLL 223 (488)
T ss_pred HHHHHHHHcCCeEEecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHH
Confidence 45555444444322110 000 0001 1222222 12332 333555567899999
Q ss_pred HHHHHHHHHcCCEEEEEcC-CCccchHHHHH--------HHHh--cCC---eEEEEecccCCC--CCCHHHHHHhhhcCc
Q 004611 500 DNCLTVAEEYDIQVNIHTD-TLNESGFVEHT--------IAAF--KGR---TIHTYHSEGAGG--GHAPDIIKVCGVKNV 563 (742)
Q Consensus 500 ~~~l~~A~e~g~~v~iH~d-tlne~g~ve~~--------l~a~--~g~---~ih~~H~~gagg--ghapdiI~~a~~~~v 563 (742)
..+++.|+++|+++.+|+. +..+...+.+. +... .+. ..|..+.....- ....+.++..++.++
T Consensus 224 ~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~ 303 (488)
T PRK06151 224 RRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAEHGV 303 (488)
T ss_pred HHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHhcCC
Confidence 9999999999999999993 33221111110 1111 111 245555432000 001177777777765
Q ss_pred ccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhh
Q 004611 564 LPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISR 643 (742)
Q Consensus 564 lpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~ 643 (742)
..+.+ |. .+ .+ ....+.+...|.+.|+.+++|||+.++ +.+..
T Consensus 304 ~v~~~-P~--------------------~~-----------~~-~g~~~~p~~~l~~~Gv~v~lGtD~~~~----~~~~~ 346 (488)
T PRK06151 304 SIVHC-PL--------------------VS-----------AR-HGSALNSFDRYREAGINLALGTDTFPP----DMVMN 346 (488)
T ss_pred EEEEC-ch--------------------hh-----------hh-hccccccHHHHHHCCCcEEEECCCCCc----cHHHH
Confidence 32211 10 00 00 112345566788889999999997322 11111
Q ss_pred hhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCC------------
Q 004611 644 TWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFG------------ 711 (742)
Q Consensus 644 ~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~------------ 711 (742)
.+.... +.... ......++++++++++|.|||+++|+++ +|+|++||.|||||+|.+.+.
T Consensus 347 ~~~~~~-~~~~~------~~~~~~~~~~~al~~aT~~~A~~lg~~~-~G~I~~G~~ADlvvld~~~~~~~~~~d~~~~lv 418 (488)
T PRK06151 347 MRVGLI-LGRVV------EGDLDAASAADLFDAATLGGARALGRDD-LGRLAPGAKADIVVFDLDGLHMGPVFDPIRTLV 418 (488)
T ss_pred HHHHHH-HHHHh------cCCCCCCCHHHHHHHHHHHHHHHhCCCC-CcccCCCCcCCEEEEeCCccccCCccCHHHHHH
Confidence 111110 00000 0012358999999999999999999987 799999999999999976431
Q ss_pred -----CCceEEEECCEEEeccC
Q 004611 712 -----AKPEMVIKGGAIAWANM 728 (742)
Q Consensus 712 -----~~p~~Vi~~G~iV~~~~ 728 (742)
.++..||++|+++|.+.
T Consensus 419 ~~~~~~~v~~v~v~G~~v~~~g 440 (488)
T PRK06151 419 TGGSGRDVRAVFVDGRVVMEDG 440 (488)
T ss_pred hhCCCCCccEEEECCEEEEECC
Confidence 37999999999999873
No 71
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=99.93 E-value=1.3e-23 Score=236.40 Aligned_cols=321 Identities=18% Similarity=0.204 Sum_probs=191.0
Q ss_pred ccEEEEecEEEcCCC--ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC--
Q 004611 334 LDTVITNAVIIDHTG--IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC-- 409 (742)
Q Consensus 334 ~dlVI~Na~Iid~~g--i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~-- 409 (742)
|+++|+|++|+++++ ...++|.|+||+|++|++... .++.++||+.|++|+|||||+|+|+..
T Consensus 1 ~~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~-------------~~~~~~id~~~~~v~Pg~vd~H~H~~~~~ 67 (424)
T PRK08393 1 MSILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNIN-------------KPADTVIDASGSVVSPGFINAHTHSPMVL 67 (424)
T ss_pred CeEEEECcEEEeCCCCceecceEEEECCEEEEecCCCC-------------CCCCeEEeCCCCEEccCeeeeccCcchHh
Confidence 478999999999776 345899999999999987422 135679999999999999999999731
Q ss_pred --------------------------chHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEee
Q 004611 410 --------------------------PQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGF 463 (742)
Q Consensus 410 --------------------------P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~ 463 (742)
++........+...++.+|++-. ...........++....+++..+
T Consensus 68 ~rg~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv--------~d~~~~~~~~~~a~~~~G~r~~~ 139 (424)
T PRK08393 68 LRGLADDVPLMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTF--------VDMYFHMEEVAKATLEVGLRGYL 139 (424)
T ss_pred hhhccCCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEE--------eccccCHHHHHHHHHHhCCeEEE
Confidence 11122233344444555555210 00011123334444444433221
Q ss_pred ----cCCCCC-CChHHHHHHH------H-hcC----ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-CCCccchHH
Q 004611 464 ----TGKGNS-AKPDELHEII------K-AGA----MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-DTLNESGFV 526 (742)
Q Consensus 464 ----~~~g~~-~~~~~l~e~i------~-aGa----~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-dtlne~g~v 526 (742)
...... ...+.+++.. + .+. .++..|..+.++++.++++.+.|+++++++++|+ ++..+ +
T Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~---~ 216 (424)
T PRK08393 140 SYGMVDLGDEEKREKEIKETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDE---I 216 (424)
T ss_pred eceEecCCCccchHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHH---H
Confidence 111111 1122222221 1 111 1345666778999999999999999999999999 33333 2
Q ss_pred HHHHHHh-----------c--CC---eEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEee
Q 004611 527 EHTIAAF-----------K--GR---TIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCH 590 (742)
Q Consensus 527 e~~l~a~-----------~--g~---~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~h 590 (742)
+...+.+ . +. ..|..+. .++.++..++.++..+.+ .
T Consensus 217 ~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l-------~~~~l~~la~~g~~v~~~---------------------P 268 (424)
T PRK08393 217 KQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWL-------SSRDIRILASAGVTVAHN---------------------P 268 (424)
T ss_pred HHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecC-------CHHHHHHHHhcCCEEEEC---------------------H
Confidence 2222111 1 11 2355443 356667666666431111 0
Q ss_pred ccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcH
Q 004611 591 HLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRI 670 (742)
Q Consensus 591 hl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~ 670 (742)
.. ..++ .....+...+.+.|+.+++|||+..+....+.+..........+. ... ....+++
T Consensus 269 ~s-----------n~~l-g~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~--~~~-----~~~~~~~ 329 (424)
T PRK08393 269 AS-----------NMKL-GSGVMPLRKLLNAGVNVALGTDGAASNNNLDMLREMKLAALLHKV--HNL-----DPTIADA 329 (424)
T ss_pred HH-----------HHhh-ccCCCCHHHHHHCCCcEEEecCCCccCCchhHHHHHHHHHHHHhh--ccC-----CCCcCCH
Confidence 00 0011 123345566778899999999986433222222221111000000 000 1224689
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC-----------------CCCCceEEEECCEEEecc
Q 004611 671 RRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF-----------------FGAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 671 ~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~-----------------~~~~p~~Vi~~G~iV~~~ 727 (742)
.++++++|.|||+++|++ .|+|++||.||||++|.+. ...++..||++|+++|.+
T Consensus 330 ~~al~~aT~~~A~~lg~~--~G~l~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 401 (424)
T PRK08393 330 ETVFRMATQNGAKALGLK--AGVIKEGYLADIAVIDFNRPHLRPINNPISHLVYSANGNDVETTIVDGKIVMLD 401 (424)
T ss_pred HHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEEeCCCCCcCCCCChHHHeeeeCCCCCeeEEEECCEEEEEC
Confidence 999999999999999996 5999999999999998652 123799999999999986
No 72
>PRK07213 chlorohydrolase; Provisional
Probab=99.93 E-value=1.5e-23 Score=232.32 Aligned_cols=312 Identities=16% Similarity=0.194 Sum_probs=190.6
Q ss_pred EEEEecEEEcCCC--ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc---
Q 004611 336 TVITNAVIIDHTG--IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP--- 410 (742)
Q Consensus 336 lVI~Na~Iid~~g--i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P--- 410 (742)
++|+|++|++... +.+++|.|++|+|.+|++. .++.++||+.|++| |||||+|+|+...
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~---------------~~~~~~id~~g~~v-PGlvd~H~H~~~~~~r 65 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNE---------------VHEGNVIDAKGLVI-PPLINAHTHIGDSSIK 65 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccC---------------CCCCeEEeCCCCEe-cceeeeccccCchhhh
Confidence 6899999999654 5678999999999999863 13457899999999 9999999997421
Q ss_pred ----------------------------hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEe
Q 004611 411 ----------------------------QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFG 462 (742)
Q Consensus 411 ----------------------------~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g 462 (742)
+........+...++..|++-+.. ....+...++.+.++....+++..
T Consensus 66 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D----~~~~~~~~~~~~~~a~~~~~~r~~ 141 (375)
T PRK07213 66 DIGIGKSLDELVKPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCD----FREGGIKGINLLKKASSDLPIKPI 141 (375)
T ss_pred cCCCCCCHHHHccCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEE----hhhcChhHHHHHHHHHHcCCCceE
Confidence 111223344455555666531100 001122223344455555665543
Q ss_pred ecCCCCCCChHH----HHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-CCCccchH---------HHH
Q 004611 463 FTGKGNSAKPDE----LHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-DTLNESGF---------VEH 528 (742)
Q Consensus 463 ~~~~g~~~~~~~----l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-dtlne~g~---------ve~ 528 (742)
+.+.......+. ++++++ ...++.++..+..+++.++.+++.|+++++++++|+ ++..+..+ ++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~ 220 (375)
T PRK07213 142 ILGRPTEADENELKKEIREILK-NSDGIGLSGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIER 220 (375)
T ss_pred EecCCCcccchhhHHHHHHHHH-hcccccccccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHH
Confidence 322211111222 233332 233566666667889999999999999999999999 34333211 333
Q ss_pred HHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhh
Q 004611 529 TIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIR 608 (742)
Q Consensus 529 ~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir 608 (742)
..+..-... ...|.... ..+.++..++.++.. ..+|+ .+.. .
T Consensus 221 ~~~~G~~~~-~i~H~~~~----~~~~i~~la~~g~~v-~~~P~--------------------sn~~------------l 262 (375)
T PRK07213 221 LINLGFKPD-FIVHATHP----SNDDLELLKENNIPV-VVCPR--------------------ANAS------------F 262 (375)
T ss_pred HHhcCCCCC-EEEECCCC----CHHHHHHHHHcCCcE-EECCc--------------------chhh------------h
Confidence 333211211 23444433 356677777766421 11111 1100 1
Q ss_pred hhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 609 AETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 609 ~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
...+++...|.+.|+.+.+|||+...+. . ..|..+..+.. ..++++.++++++|.|+|+++|++
T Consensus 263 ~~g~~~v~~l~~~Gv~v~lGTD~~~~~~-~----~~~~e~~~~~~-----------~~~~~~~~~l~~aT~~gA~~lg~~ 326 (375)
T PRK07213 263 NVGLPPLNEMLEKGILLGIGTDNFMANS-P----SIFREMEFIYK-----------LYHIEPKEILKMATINGAKILGLI 326 (375)
T ss_pred ccCCccHHHHHHCCCEEEEeeCCCCCch-H----hHHHHHHHHHH-----------HhCcCHHHHHHHHHHHHHHHhCCC
Confidence 1234556678888999999999854321 1 12222211111 226889999999999999999997
Q ss_pred CCcccccCCCcceEEEECCCCC---------------CCCceEEEECCEE
Q 004611 689 QFVGSVEVGKLADLVLWKPSFF---------------GAKPEMVIKGGAI 723 (742)
Q Consensus 689 d~vGSIe~GK~ADLVV~Dp~~~---------------~~~p~~Vi~~G~i 723 (742)
+ +|+|++||.||||++|++.+ ..++..||++|++
T Consensus 327 ~-~G~l~~G~~ADlvv~d~~~~~p~~dp~~~lV~~~~~~~v~~v~v~G~~ 375 (375)
T PRK07213 327 N-VGLIEEGFKADFTFIKPTNIKFSKNPYASIITRCESGDIVNKILKGKL 375 (375)
T ss_pred C-cCCcCCCCcccEEEEcCccccccCCchHHHhhhccCCCceEEEECCcC
Confidence 6 89999999999999986421 2377888888873
No 73
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.93 E-value=1.4e-23 Score=241.95 Aligned_cols=310 Identities=23% Similarity=0.268 Sum_probs=198.8
Q ss_pred cEEEEecEEEcCC-C-ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch-
Q 004611 335 DTVITNAVIIDHT-G-IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ- 411 (742)
Q Consensus 335 dlVI~Na~Iid~~-g-i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~- 411 (742)
|++|+|++|+|.. + +..++|.|+||+|++|++. .+.++||++|++|+|||||+|+|+.++.
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~----------------~~~~viDa~G~~v~PG~ID~H~Hi~~~~~ 64 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKY----------------NGVKVIDALGEYAVPGFIDAHIHIESSML 64 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCC----------------CCCeEEECCCCEEEeCeEecccccCCCCC
Confidence 6899999999843 3 6778999999999999863 2458999999999999999999986432
Q ss_pred ----HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCC---------C--ChHHHH
Q 004611 412 ----LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNS---------A--KPDELH 476 (742)
Q Consensus 412 ----~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~---------~--~~~~l~ 476 (742)
+...++..|+||++. .++......+...++.+++..+..++++.+....+. . ..++++
T Consensus 65 ~~~~~~~~al~~GvTtvv~-------~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~ 137 (552)
T TIGR01178 65 TPSEFAKLVLPHGVTTVVS-------DPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSCVPALQFETSGAVLTAEDID 137 (552)
T ss_pred ChhHHHHHHHCCCEEEEEc-------CCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCCCCCCcccCCCCccCHHHHH
Confidence 234445555555553 233333456788899999988888988865544321 1 366778
Q ss_pred HHHHh-cCceeEeccCCC---CCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCH
Q 004611 477 EIIKA-GAMGLKLHEDWG---STPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAP 552 (742)
Q Consensus 477 e~i~a-Ga~glkl~~d~~---~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghap 552 (742)
++++. |+.|+|.+++|. ..+..+.+.++.+++.+..+..|++.+... .+.++...-+...|... ..
T Consensus 138 ~~~~~~~V~glke~m~~~~v~~~d~~~l~~i~~a~~~g~~I~gHap~l~~~-----eL~~~~~aGi~~dHe~~-----s~ 207 (552)
T TIGR01178 138 ELMELDEVLGLAEVMDYPGVINADIEMLNKINSARKRNKVIDGHCPGLSGK-----LLNKYISAGISNDHEST-----SI 207 (552)
T ss_pred HHHcCCCccEEEEEecchhhcCCCHHHHHHHHHHHhCCCEEEecCCCCCHH-----HHHHHHHcCCCCCcCcC-----CH
Confidence 87754 999999999983 345566666689999999999999755432 12221111111222111 12
Q ss_pred HHHHHhhhcCcccCCCCCCCCCcchhhhhhcce-EEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCC
Q 004611 553 DIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDM-LMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDS 631 (742)
Q Consensus 553 diI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~-l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs 631 (742)
+....... ++| ++..+-......+.+ .+.. ....+..++++||.
T Consensus 208 ~ea~e~~~----------------------~Gm~~~ir~gs~~~n~~~~-----------~~~~--~~~~~~~~~l~TD~ 252 (552)
T TIGR01178 208 EEAREKLR----------------------LGMKLMIREGSAAKNLEAL-----------HPLI--NEKNCRSLMLCTDD 252 (552)
T ss_pred HHHHHHHH----------------------CCCEEEEeCCccccCHHHH-----------HHHH--hhcCCceEEEEeCC
Confidence 22222222 222 333332211100111 0111 11357899999994
Q ss_pred CccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCC
Q 004611 632 QAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFG 711 (742)
Q Consensus 632 ~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~ 711 (742)
..+.. +.........++.. ...++++.++++|+|.|||+++|+++ +|+|++|+.||||+|+. .-.
T Consensus 253 ~~~~~----~~~~g~l~~~v~~a---------i~~g~~~~~Al~maT~npA~~lgl~~-~G~I~pG~~ADlvvl~~-l~~ 317 (552)
T TIGR01178 253 RHVND----ILNEGHINHIVRRA---------IEHGVDPFDALQMASINPAEHFGIDV-GGLIAPGDPADFVILKD-LRN 317 (552)
T ss_pred CChhH----HHhcCCHHHHHHHH---------HHcCCCHHHHHHHHHHHHHHHcCCCC-CcccCCCCcCCEEEECC-CCC
Confidence 21110 00000001111110 12378999999999999999999986 79999999999999993 123
Q ss_pred CCceEEEECCEEEecc
Q 004611 712 AKPEMVIKGGAIAWAN 727 (742)
Q Consensus 712 ~~p~~Vi~~G~iV~~~ 727 (742)
.++..||++|++|..+
T Consensus 318 ~~v~~v~~~G~~v~~~ 333 (552)
T TIGR01178 318 FKVNKTYVKGKLLDLN 333 (552)
T ss_pred ceEEEEEECCEEEccc
Confidence 5789999999998875
No 74
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=99.93 E-value=6.1e-24 Score=240.19 Aligned_cols=328 Identities=15% Similarity=0.186 Sum_probs=187.7
Q ss_pred EEEEecEEEcCC--C-c-eeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC--
Q 004611 336 TVITNAVIIDHT--G-I-FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC-- 409 (742)
Q Consensus 336 lVI~Na~Iid~~--g-i-~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~-- 409 (742)
++|+|++|++.+ . + .+++|.|+||+|++||+..+.. ...++.++||+.|++|+|||||+|+|+..
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~---------~~~~~~~viD~~g~lv~PGfID~H~H~~~~~ 72 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELK---------AKYPDAEFIDAKGKLIMPGLINSHNHIYSGL 72 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhc---------cccCCCeEEeCCCCEEecceeeccccchhhh
Confidence 589999999733 2 3 3589999999999999742211 01245689999999999999999999620
Q ss_pred ----------c--------------------hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCc
Q 004611 410 ----------P--------------------QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPL 459 (742)
Q Consensus 410 ----------P--------------------~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~v 459 (742)
+ +....+...++..++..|++-.-..... ........+...++.+..++
T Consensus 73 ~rg~~~~~~~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~-~~~~~~~~~~~~~a~~~~Gi 151 (442)
T PRK07203 73 ARGMMANIPPPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHAS-PNYIGGSLFTIADAAKKVGL 151 (442)
T ss_pred hcccccccCCCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccc-cccccchHHHHHHHHHHhCC
Confidence 0 0011112233334444444211000000 00011223455566666666
Q ss_pred eEeec----CCCCCCC-hHHHHHH---HH--hc----C--ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-CCCcc
Q 004611 460 NFGFT----GKGNSAK-PDELHEI---IK--AG----A--MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-DTLNE 522 (742)
Q Consensus 460 n~g~~----~~g~~~~-~~~l~e~---i~--aG----a--~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-dtlne 522 (742)
+..+. ....... .+.+++. ++ .+ . ..+.+|..+.++++.++.+.++|+++++++++|. ++..|
T Consensus 152 R~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e 231 (442)
T PRK07203 152 RAMLCYETSDRDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYD 231 (442)
T ss_pred eEEEecccccCCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHH
Confidence 54321 1111111 1112221 11 11 1 2456788888999999999999999999999999 44333
Q ss_pred chHHHHHHHH--------------hcCC--eEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceE
Q 004611 523 SGFVEHTIAA--------------FKGR--TIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDML 586 (742)
Q Consensus 523 ~g~ve~~l~a--------------~~g~--~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l 586 (742)
++..++. +..+ ..|..|. .++.++..++.++.
T Consensus 232 ---~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~-------~~~d~~~la~~g~~---------------------- 279 (442)
T PRK07203 232 ---VSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYL-------SDEEIDLLKETDTF---------------------- 279 (442)
T ss_pred ---HHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecC-------CHHHHHHHHhcCCe----------------------
Confidence 2222221 1111 1233333 24555555555532
Q ss_pred EEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCC
Q 004611 587 MVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADND 666 (742)
Q Consensus 587 ~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~ 666 (742)
++|....+ .+ ....+++...|.+.|+.+.+|||+... +.+... ..+..+ ++.. ....
T Consensus 280 -v~~~P~sn---------~~-l~~g~~p~~~~~~~Gv~v~lGtD~~~~----d~~~~~-~~a~~~--~~~~-----~~~~ 336 (442)
T PRK07203 280 -VVHNPESN---------MG-NAVGYNPVLEMIKNGILLGLGTDGYTS----DMFESY-KVANFK--HKHA-----GGDP 336 (442)
T ss_pred -EEECchhh---------hh-cccCCCCHHHHHHCCCeEEEcCCCCCc----cHHHHH-HHHHHH--hccc-----cCCC
Confidence 11111100 01 122345566778889999999997421 111111 111001 1100 0112
Q ss_pred CCcHHHHHHHHHHHHHHHcC--CCCCcccccCCCcceEEEECCCCC-----------------CCCceEEEECCEEEecc
Q 004611 667 NLRIRRYIAKYTINPAIANG--FSQFVGSVEVGKLADLVLWKPSFF-----------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 667 gl~~~~aL~~aTiNpA~~lG--l~d~vGSIe~GK~ADLVV~Dp~~~-----------------~~~p~~Vi~~G~iV~~~ 727 (742)
..+++++++|+|.|||+++| +.+++|+|++||.||||++|.+.. ..+|..||++|+++|.+
T Consensus 337 ~~~~~~~~~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~v~~~~~~~v~~v~v~G~~v~~~ 416 (442)
T PRK07203 337 NVGWPESPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPTPLNEDNINGHILFGMNGGSVDTTIVNGKVVMED 416 (442)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcCCCCeecCccccccceEeecCCCceEEEEECCEEEEEC
Confidence 34578999999999999999 456799999999999999996431 24789999999999986
Q ss_pred C
Q 004611 728 M 728 (742)
Q Consensus 728 ~ 728 (742)
.
T Consensus 417 g 417 (442)
T PRK07203 417 R 417 (442)
T ss_pred C
Confidence 4
No 75
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.93 E-value=7.6e-24 Score=234.39 Aligned_cols=331 Identities=20% Similarity=0.235 Sum_probs=190.3
Q ss_pred EEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC-------
Q 004611 337 VITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC------- 409 (742)
Q Consensus 337 VI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~------- 409 (742)
.|+|++|+|+. ...++|+|+||+|++||+... .+++.++||+.|++|+|||||+|+|+..
T Consensus 1 ~~~~~~~~~~~-~~~~~v~I~~g~I~~Vg~~~~------------~~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~ 67 (398)
T cd01293 1 LLRNARLADGG-TALVDIAIEDGRIAAIGPALA------------VPPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRW 67 (398)
T ss_pred CeeeeEEeCCC-ceEEEEEEECCEEEEEecCCC------------CCCCCceEeCCCCEEccCEeeeeeccCcccccCCC
Confidence 37899999974 577899999999999998532 1356799999999999999999999731
Q ss_pred -----------------------ch--------HHHHHHHHHHHHHHhCCC-CCCCCCcccccCCChHHHHHHHHhcCCC
Q 004611 410 -----------------------PQ--------LAHDAIASGITTLVGGGT-GPADGTRATTCTPAPSQMKLMLQSTDDL 457 (742)
Q Consensus 410 -----------------------P~--------~~~~al~~GvTTl~~gGt-gp~~~~~~~~~t~~~~~i~~~l~a~~~~ 457 (742)
|+ .+.+++++|+||+...+. .+. .+...++...+..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~---------~~~~~~~~~~~~~~~~ 138 (398)
T cd01293 68 PNNSGGTLLEAIIAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPA---------AGLKALEALLELREEW 138 (398)
T ss_pred CCCCccccHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeeccccc---------ccchHHHHHHHHHHHh
Confidence 00 035667777777754322 111 0101112222221111
Q ss_pred --CceE---eecCCCC---CCChHHHHHHHHhcCc---eeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcC-CCccch-
Q 004611 458 --PLNF---GFTGKGN---SAKPDELHEIIKAGAM---GLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTD-TLNESG- 524 (742)
Q Consensus 458 --~vn~---g~~~~g~---~~~~~~l~e~i~aGa~---glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~d-tlne~g- 524 (742)
.+.+ .+...+. ....+.+++..+.|+. ++.......++++.+.++++.|+++++++++|+. +..+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~ 218 (398)
T cd01293 139 ADLIDLQIVAFPQHGLLSTPGGEELMREALKMGADVVGGIPPAEIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSR 218 (398)
T ss_pred hccceEEEEeccCccccCCCCHHHHHHHHHHhCCCEEeCCCCCcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchh
Confidence 1111 1111111 1223445555555542 1222222456789999999999999999999994 322211
Q ss_pred HHHHHHHHh--cC--CeEEEEecccCCC---CCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCch
Q 004611 525 FVEHTIAAF--KG--RTIHTYHSEGAGG---GHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIP 597 (742)
Q Consensus 525 ~ve~~l~a~--~g--~~ih~~H~~gagg---ghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~ 597 (742)
.+++.++.. .| ....+.|...... ...++.++..++.++..+.+ |...+..... ....
T Consensus 219 ~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~-p~s~~~l~~~---------~~~~----- 283 (398)
T cd01293 219 TLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSL-PPINLYLQGR---------EDTT----- 283 (398)
T ss_pred HHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeC-CCcchhhccc---------ccCC-----
Confidence 122222211 11 2234555443321 11135678888877643333 2111110000 0000
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCc-c-CccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHH
Q 004611 598 EDVAFAESRIRAETIAAEDILHDMGAISIISSDSQA-M-GRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIA 675 (742)
Q Consensus 598 edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a-~-gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~ 675 (742)
-+....++...+++.|+.+.+|||+.. + ...+ ....|........ ...+ ....+..++|+
T Consensus 284 ---------~~~~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~~~--~~~~~~~~~~~~~-~~~~------~~~~~~~~al~ 345 (398)
T cd01293 284 ---------PKRRGVTPVKELRAAGVNVALGSDNVRDPWYPFG--SGDMLEVANLAAH-IAQL------GTPEDLALALD 345 (398)
T ss_pred ---------CCCCCCCcHHHHHHCCCeEEECCCCCCCCCcCCC--CCCHHHHHHHHHH-HHcC------CChhhHHHHHH
Confidence 011234566778889999999999742 1 0000 0011211111000 0001 11235689999
Q ss_pred HHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC------CCCceEEEECCEEE
Q 004611 676 KYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF------GAKPEMVIKGGAIA 724 (742)
Q Consensus 676 ~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~------~~~p~~Vi~~G~iV 724 (742)
++|+|+|+++|+ ++|+|++||.||||+||.+++ ..++..||++|+++
T Consensus 346 ~aT~~~A~~lg~--~~G~l~~Gk~ADlv~~d~~~~~~~~~~~~~~~~v~~~G~~~ 398 (398)
T cd01293 346 LITGNAARALGL--EDYGIKVGCPADLVLLDAEDVAEAVARQPPRRVVIRKGRVV 398 (398)
T ss_pred hcChhhhhhcCC--cCcccccCCcceEEEECCCCHHHHHhcCCCccEEEECCEEC
Confidence 999999999999 379999999999999998874 24799999999974
No 76
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.92 E-value=2.1e-23 Score=235.10 Aligned_cols=324 Identities=18% Similarity=0.222 Sum_probs=189.8
Q ss_pred ccEEEEecEEEcCCC--ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC--
Q 004611 334 LDTVITNAVIIDHTG--IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC-- 409 (742)
Q Consensus 334 ~dlVI~Na~Iid~~g--i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~-- 409 (742)
++++|+|++|++.++ +.+++|.|+||+|.+|++... .++.++||+.|++|+|||||+|+|+..
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~-------------~~~~~~id~~g~~v~PG~vd~H~H~~~~~ 68 (430)
T PRK06038 2 ADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTP-------------GDADTVIDAKGSVVMPGLVNTHTHAAMTL 68 (430)
T ss_pred CCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCC-------------CCCCEEEeCCCCEEecCeeecccCcchhh
Confidence 478999999997543 456899999999999998521 234579999999999999999999731
Q ss_pred --------c------------------hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEee
Q 004611 410 --------P------------------QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGF 463 (742)
Q Consensus 410 --------P------------------~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~ 463 (742)
+ +........+...++..|++-+ .+.........++.+..+++..+
T Consensus 69 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv--------~D~~~~~~~~~~a~~~~GiR~~~ 140 (430)
T PRK06038 69 FRGYADDLPLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSF--------ADMYFYMDEVAKAVEESGLRAAL 140 (430)
T ss_pred hhhccCCCCHHHHHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeE--------EccccCHHHHHHHHHHhCCeEEE
Confidence 1 0011122233444455555211 00001112334444445544321
Q ss_pred ----cCCCCCC-ChHHH---HHHHHh------cC--ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCC-ccchHH
Q 004611 464 ----TGKGNSA-KPDEL---HEIIKA------GA--MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTL-NESGFV 526 (742)
Q Consensus 464 ----~~~g~~~-~~~~l---~e~i~a------Ga--~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtl-ne~g~v 526 (742)
....... ..+.+ .++++. |. .++.++..+.++++.++.+++.|+++|+++.+|+... .+...+
T Consensus 141 ~~~~~d~~~~~~~~~~l~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~ 220 (430)
T PRK06038 141 SYGMIDLGDDEKGEAELKEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQM 220 (430)
T ss_pred EchhccCCCccchHHHHHHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHH
Confidence 1111111 11222 222221 11 1334666677899999999999999999999999422 111111
Q ss_pred HH--------HHHHh---cCCe--EEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccC
Q 004611 527 EH--------TIAAF---KGRT--IHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLH 593 (742)
Q Consensus 527 e~--------~l~a~---~g~~--ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~ 593 (742)
.. .++.. ..+. .|..+. .++.++..++.++..+. |...+
T Consensus 221 ~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l-------~~~~~~~la~~g~~v~~---------------------~P~~n 272 (430)
T PRK06038 221 KEQYGMCSVNYLDDIGFLGPDVLAAHCVWL-------SDGDIEILRERGVNVSH---------------------NPVSN 272 (430)
T ss_pred HHHhCCCHHHHHHHcCCCCCCeEEEEEecC-------CHHHHHHHHhcCCEEEE---------------------ChHHh
Confidence 11 01111 1111 344443 35667776666653221 11100
Q ss_pred CCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHH
Q 004611 594 KDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRY 673 (742)
Q Consensus 594 ~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~a 673 (742)
. . ......+...+.+.|+.+.+|||+.......+.+........ .++ +. .....++++.++
T Consensus 273 ~-----------~-~~~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~---~~~--~~--~~~~~~~~~~~a 333 (430)
T PRK06038 273 M-----------K-LASGIAPVPKLLERGVNVSLGTDGCASNNNLDMFEEMKTAAL---LHK--VN--TMDPTALPARQV 333 (430)
T ss_pred h-----------h-hccCCCCHHHHHHCCCeEEEeCCCCccCCCcCHHHHHHHHHH---Hhh--hc--cCCCCcCCHHHH
Confidence 0 0 112344566777889999999997543222222211111000 000 00 001347899999
Q ss_pred HHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC-----------------CCCceEEEECCEEEecc
Q 004611 674 IAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF-----------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 674 L~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~-----------------~~~p~~Vi~~G~iV~~~ 727 (742)
++++|+|||+++|++ .|+|++||.||||++|.+.. ..++..||++|+++|.+
T Consensus 334 l~~aT~~gA~~lg~~--~G~l~~G~~ADlvvld~~~~~~~p~~~~~~~~v~~~~~~~v~~v~v~G~~v~~~ 402 (430)
T PRK06038 334 LEMATVNGAKALGIN--TGMLKEGYLADIIIVDMNKPHLTPVRDVPSHLVYSASGSDVDTTIVDGRILMED 402 (430)
T ss_pred HHHHhHHHHHHhCCC--CCccCCCcccCEEEEeCCCCccCCCCChHHheeEeCCCCceeEEEECCEEEEEC
Confidence 999999999999996 69999999999999997621 23789999999999986
No 77
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.92 E-value=1e-23 Score=233.26 Aligned_cols=333 Identities=17% Similarity=0.176 Sum_probs=205.3
Q ss_pred ccEEEEecEEEcCCCce-eeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc--
Q 004611 334 LDTVITNAVIIDHTGIF-KADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP-- 410 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~-~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P-- 410 (742)
+|++|+|++|++.+++. .++|.|+||||++|++.... +...++||++|++|+|||||+|+|....
T Consensus 3 ~~~~i~n~~i~~~~~~~~~~~i~V~dGkI~~I~~~~~~------------~~~~~viD~~G~~i~PGfID~HvHg~~g~~ 70 (380)
T TIGR00221 3 ESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAEL------------EPEIKEIDLPGNVLTPGFIDIHIHGCGGVD 70 (380)
T ss_pred ceEEEEeeEEECCCCEEeccEEEEECCEEEEEcccccC------------CCCCeEEECCCCEEccceeeeeeccccCcC
Confidence 67999999999987765 58999999999999874321 2345799999999999999999996321
Q ss_pred --hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHh----c-C-CCCceEeecCCCCC-------------
Q 004611 411 --QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQS----T-D-DLPLNFGFTGKGNS------------- 469 (742)
Q Consensus 411 --~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a----~-~-~~~vn~g~~~~g~~------------- 469 (742)
....+.+..+...+..+|++-. ..++.+.....+.+.++. . + .....+|++.++..
T Consensus 71 ~~~~~~e~~~~~~~~~~~~GvTt~---l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~ 147 (380)
T TIGR00221 71 TNDASFETLEIMSERLPKSGCTSF---LPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEY 147 (380)
T ss_pred CCCCCHHHHHHHHHHHHhcCeeEE---eeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHH
Confidence 1123677777777777777411 122333344443333322 2 1 12345777665532
Q ss_pred ---CChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHHcCCEEEE-EcCCCccchHHHHHHHHhcCCeEEEEeccc
Q 004611 470 ---AKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNI-HTDTLNESGFVEHTIAAFKGRTIHTYHSEG 545 (742)
Q Consensus 470 ---~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~i-H~dtlne~g~ve~~l~a~~g~~ih~~H~~g 545 (742)
++.+.++++.+.....+|+-.--... ..-.+.++++.++|+.+++ |++...+ .+...+++......|.|..+.
T Consensus 148 i~~p~~~~~~~~~~~~~~~i~~vTlAPE~-~~~~~~i~~l~~~gi~vs~GHs~A~~~--~~~~a~~~Ga~~~THlfNaM~ 224 (380)
T TIGR00221 148 IREPDVELFKKFLCEAGGVITKVTLAPEE-DQHFELIRHLKDAGIIVSAGHTNATYE--LAKAAFKAGATHATHLYNAMS 224 (380)
T ss_pred hhCcCHHHHHHHHHhcCCCEEEEEECCCC-CChHHHHHHHHHCCeEEEeeCCCCCHH--HHHHHHHcCCCeeeeeccCCC
Confidence 44566777776533334432211111 1225677889999999998 9864322 244445554445677777776
Q ss_pred CCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCC-e
Q 004611 546 AGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGA-I 624 (742)
Q Consensus 546 aggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv-~ 624 (742)
....+.|.++..+-... .. +..++...+|+++...+.. ++..|. .
T Consensus 225 ~~~hR~pg~vga~l~~~----------~~-------~~elI~Dg~Hv~p~~~~~~-----------------~r~kg~~~ 270 (380)
T TIGR00221 225 PIHHREPGVIGAVLDHD----------DV-------YTEIIADGIHIHPLNIRLA-----------------KKLKGDSK 270 (380)
T ss_pred CcCCCCCcHHHHHhcCC----------Cc-------EEEEEcCCCcCCHHHHHHH-----------------HHhcCCCc
Confidence 66666776666543211 00 1223344578876533322 122343 5
Q ss_pred EEEecCCCccCccchhhhhhhhhh------hhhhhhccccCCCcc----------cCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 625 SIISSDSQAMGRIGEVISRTWQTA------HKMKSQRGSFGPSAA----------DNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 625 ~~lgSDs~a~gr~ge~i~~~~~~~------~~m~~~~~~L~~~~~----------~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
+++.||+....-..+-. ..|... .......+.|.++.. ...+++++++++++|.|||+++|++
T Consensus 271 ~~lvtDa~~~~g~~~G~-y~l~~~~v~~~~g~~~~~~g~LAGs~ltl~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~ 349 (380)
T TIGR00221 271 LCLVTDSMAAAGAKDGV-FIFGGKTVYIREGTCLDSNGTLAGSSLTMIEGARNLVEFTNISLTDAARMSSLNPARALGID 349 (380)
T ss_pred EEEEeccccccCCCCce-EeECCEEEEEECCEEEcCCCceechhhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHhCCC
Confidence 77788854321111100 001000 000111222333221 2357999999999999999999998
Q ss_pred CCcccccCCCcceEEEECCCCCCCCceEEEECCE
Q 004611 689 QFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGA 722 (742)
Q Consensus 689 d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~ 722 (742)
+++|+|++|+.|||++||++ .++..||++|+
T Consensus 350 ~~~G~i~~G~~ADlvv~d~~---~~v~~t~~~G~ 380 (380)
T TIGR00221 350 DRLGSVTVGKDANLVVFTPD---FEVILTIVNGN 380 (380)
T ss_pred CCCcccCCCCcCCEEEECCC---CCEEEEEeCCC
Confidence 87899999999999999998 68999999984
No 78
>PRK09228 guanine deaminase; Provisional
Probab=99.92 E-value=2.9e-23 Score=234.13 Aligned_cols=319 Identities=17% Similarity=0.170 Sum_probs=186.4
Q ss_pred ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc------------------
Q 004611 349 IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP------------------ 410 (742)
Q Consensus 349 i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P------------------ 410 (742)
+.+++|.|+||+|++||+..+.. ...+.++++||+.|++|+|||||+|+|+...
T Consensus 29 ~~~g~I~I~~g~I~~Vg~~~~~~--------~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~ 100 (433)
T PRK09228 29 IEDGLLLVEDGRIVAAGPYAELR--------AQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYT 100 (433)
T ss_pred ECCeEEEEECCEEEEEcChHHhh--------hhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhh
Confidence 45689999999999999853210 0011246899999999999999999996210
Q ss_pred ----------hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEee----cCCCCC----CCh
Q 004611 411 ----------QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGF----TGKGNS----AKP 472 (742)
Q Consensus 411 ----------~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~----~~~g~~----~~~ 472 (742)
+........++..++..|++-+.. .....+.......++.+..+++..+ ...... ...
T Consensus 101 ~~~e~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d----~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~ 176 (433)
T PRK09228 101 FPEERRFADPAYAREVAEFFLDELLRNGTTTALV----FGTVHPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTA 176 (433)
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEe----ccccCHHHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCH
Confidence 011111222334445555521110 0112233455666666666655432 211000 111
Q ss_pred -H---HHHHHHH----hcCc--eeEeccCCCCCHHHHHHHHHHHHHc-CCEEEEEc-CCCccchHHHHH----------H
Q 004611 473 -D---ELHEIIK----AGAM--GLKLHEDWGSTPAAIDNCLTVAEEY-DIQVNIHT-DTLNESGFVEHT----------I 530 (742)
Q Consensus 473 -~---~l~e~i~----aGa~--glkl~~d~~~t~~~l~~~l~~A~e~-g~~v~iH~-dtlne~g~ve~~----------l 530 (742)
+ ...+.++ .+.. ++.+|..+.++++.++.+.++|+++ ++++++|. ++..+...+.+. +
T Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l 256 (433)
T PRK09228 177 ESGYDDSKALIERWHGKGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVY 256 (433)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHH
Confidence 1 1112221 1222 4556778889999999999999998 99999999 454443222221 1
Q ss_pred HHh--cCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhh
Q 004611 531 AAF--KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIR 608 (742)
Q Consensus 531 ~a~--~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir 608 (742)
+.. -+......|.... .++.++..++.++..+. +|+ .+. + .
T Consensus 257 ~~~G~l~~~~~~~H~~~l----~~~~~~~la~~g~~v~~-~P~--------------------sn~-----------~-l 299 (433)
T PRK09228 257 ERYGLLGPRAVFAHCIHL----EDRERRRLAETGAAIAF-CPT--------------------SNL-----------F-L 299 (433)
T ss_pred HHcCCCCCCeEEEeccCC----CHHHHHHHHHcCCeEEE-CCc--------------------cHH-----------h-h
Confidence 111 1223334444333 35566666665542111 111 000 0 1
Q ss_pred hhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 609 AETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 609 ~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
...+++...+.+.|+.+++|||... +... ..|..+..... ...+ ....++++++|+++|.|||+++|++
T Consensus 300 g~g~~~~~~~~~~Gv~v~lGtD~~~-~~~~----d~~~~~~~~~~-~~~~-----~~~~~~~~~~l~~aT~~~A~~lg~~ 368 (433)
T PRK09228 300 GSGLFDLKRADAAGVRVGLGTDVGG-GTSF----SMLQTMNEAYK-VQQL-----QGYRLSPFQAFYLATLGGARALGLD 368 (433)
T ss_pred cCCCcCHHHHHHCCCeEEEecCCCC-CCCC----CHHHHHHHHHH-Hhhc-----ccCCCCHHHHHHHHhHHHHHHhCCC
Confidence 1234455677788999999999742 1111 11211111100 0001 2346899999999999999999999
Q ss_pred CCcccccCCCcceEEEECCCCC-------------------------CCCceEEEECCEEEecc
Q 004611 689 QFVGSVEVGKLADLVLWKPSFF-------------------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 689 d~vGSIe~GK~ADLVV~Dp~~~-------------------------~~~p~~Vi~~G~iV~~~ 727 (742)
+++|+|++||.||||+||.+.. ..+++.||++|+++++.
T Consensus 369 ~~~G~l~~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~d~~~~lv~~~~~~~V~~v~VdG~~v~~~ 432 (433)
T PRK09228 369 DRIGNLAPGKEADFVVLDPAATPLLALRTARAESLEELLFALMTLGDDRAVAETYVAGRPVYRR 432 (433)
T ss_pred CCCcccCCCCCCCEEEEcCCCCccccchhcccCCHHHHHHHHhhcCCccceeEEEECCEEeccC
Confidence 8899999999999999986531 23789999999999874
No 79
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.92 E-value=1.5e-23 Score=232.29 Aligned_cols=334 Identities=16% Similarity=0.109 Sum_probs=204.1
Q ss_pred EEEEecEEEcCCCcee-eEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc----
Q 004611 336 TVITNAVIIDHTGIFK-ADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP---- 410 (742)
Q Consensus 336 lVI~Na~Iid~~gi~~-adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P---- 410 (742)
++|+|++|+++.++.. .+|.|+||+|++|++.... ..+.++||++|++|+|||||+|+|....
T Consensus 2 ~~i~n~~i~~~~~~~~~~~v~IedgkI~~I~~~~~~------------~~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~ 69 (382)
T PRK11170 2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAEL------------PPGIEQRDLNGAILSPGFIDLQLNGCGGVQFN 69 (382)
T ss_pred EEEEeeEEECCCCeEeCCEEEEECCEEEEecCCccC------------CCCCeEEeCCCCEEccceeeeeecCccCcccc
Confidence 6799999999887654 6999999999999875221 1355899999999999999999995311
Q ss_pred ----hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhc----C-CCCceEeecCCCCC------------
Q 004611 411 ----QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQST----D-DLPLNFGFTGKGNS------------ 469 (742)
Q Consensus 411 ----~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~----~-~~~vn~g~~~~g~~------------ 469 (742)
....+.+......++.+|++-. .+++.+.....+...++.. + .....+|++.++..
T Consensus 70 ~~~~~~~~~~l~~~~~~~~~~GvTt~---lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGPfi~~~~~Gah~~~ 146 (382)
T PRK11170 70 DTAEAISVETLEIMQKANEKSGCTSF---LPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPYLNLVKKGTHNPE 146 (382)
T ss_pred cCccCCCHHHHHHHHHHHHhcCEeEE---eeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecCCCCcccCCCCCHH
Confidence 1123566666666666666311 1233344444443333321 1 22345777665532
Q ss_pred ----CChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHHcCCEEEE-EcCCCccchHHHHHHHHhcCCeEEEEecc
Q 004611 470 ----AKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNI-HTDTLNESGFVEHTIAAFKGRTIHTYHSE 544 (742)
Q Consensus 470 ----~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~i-H~dtlne~g~ve~~l~a~~g~~ih~~H~~ 544 (742)
++.+.++.+.+.. ..+|+-.--...+ . .+.++.+.+.|+.+++ |+....+ .+...+++......|.|..+
T Consensus 147 ~~~~p~~~~~~~~~~~~-~~i~~iTlAPE~~-~-~~~i~~l~~~gi~vs~GHs~A~~~--~~~~a~~~Ga~~~THlfNaM 221 (382)
T PRK11170 147 FIRKPDAEMVDFLCENA-DVITKVTLAPEMV-D-AEVIRKLVEAGIVVSAGHSNATYE--EAKAGFRAGITFATHLYNAM 221 (382)
T ss_pred HhcCcCHHHHHHHHhcc-CCEEEEEECCCCC-c-HHHHHHHHHCCcEEEeeCCcCCHH--HHHHHHHcCCCEEeeccccC
Confidence 3345566666553 2455433222222 2 2788889999999998 8864322 24444555444566777776
Q ss_pred cCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCe
Q 004611 545 GAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAI 624 (742)
Q Consensus 545 gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~ 624 (742)
.....+.|.++..+-... .. ..+++...+|+++...+.. ++..|-.
T Consensus 222 ~~~~hR~pg~vga~l~~~----------~~-------~~elI~Dg~Hv~p~~~~~~-----------------~~~k~~~ 267 (382)
T PRK11170 222 PYITGREPGLVGAILDEP----------DV-------YCGIIADGLHVDYANIRNA-----------------KRLKGDK 267 (382)
T ss_pred CcccCCCcchhhHhhcCC----------Cc-------EEEEEcCcccCCHHHHHHH-----------------HHhcCCc
Confidence 666666776666543211 00 1223344578876532222 1222455
Q ss_pred EEEecCCCccCccchhhhhhhhh------hhhhhhhccccCCCcc----------cCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 625 SIISSDSQAMGRIGEVISRTWQT------AHKMKSQRGSFGPSAA----------DNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 625 ~~lgSDs~a~gr~ge~i~~~~~~------~~~m~~~~~~L~~~~~----------~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
+++.||+.+..-..+.-.. |.. ........+.|.++.. ...+++++++++++|.|||+++|++
T Consensus 268 ~~lvtDa~~~~G~~~g~y~-l~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~ 346 (382)
T PRK11170 268 LCLVTDATAPAGANIEQFI-FAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGVD 346 (382)
T ss_pred EEEEeccccCCCCCCCeEE-ECCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCC
Confidence 7788886532111100000 000 0001111223333221 3468999999999999999999998
Q ss_pred CCcccccCCCcceEEEECCCCCCCCceEEEECCEEEecc
Q 004611 689 QFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 689 d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~ 727 (742)
+++|+|++|+.|||+|||.+ .++..||++|+++|.+
T Consensus 347 ~~~G~i~~G~~ADlvvld~~---~~v~~v~~~G~~~~~~ 382 (382)
T PRK11170 347 KRLGSIEAGKVANLTAFTRD---FKITKTIVNGNEVVTQ 382 (382)
T ss_pred CCccccCCCCcCCEEEECCC---CcEEEEEECCEEeecC
Confidence 87899999999999999987 6899999999998853
No 80
>PRK04250 dihydroorotase; Provisional
Probab=99.92 E-value=1.5e-23 Score=233.87 Aligned_cols=336 Identities=18% Similarity=0.176 Sum_probs=211.3
Q ss_pred ecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch-HHHHHHH
Q 004611 340 NAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ-LAHDAIA 418 (742)
Q Consensus 340 Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~-~~~~al~ 418 (742)
+++|++..++..++|.|+||+|.+|++. + .++.++||+.|++|+|||||+|+|+..+. ...+.+.
T Consensus 3 ~~~v~~~~~~~~~~i~i~~G~I~~i~~~-~-------------~~~~~~iD~~g~~v~PG~ID~HvH~~~~~~~~~e~~~ 68 (398)
T PRK04250 3 EGKFLLKGRIVEGGIGIENGRISKISLR-D-------------LKGKEVIKVKGGIILPGLIDVHVHLRDFEESYKETIE 68 (398)
T ss_pred eEEEEECCcEEEEEEEEECCEEEEeeCC-C-------------CCCCeEEECCCCEEccCEEeccccccCCCCCcHHHHH
Confidence 5678877777789999999999999741 1 13458999999999999999999996543 3467888
Q ss_pred HHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCH
Q 004611 419 SGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTP 496 (742)
Q Consensus 419 ~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~ 496 (742)
.+....+.+|++ ..+.++..+.......+....+..+. ..++|++++ ......+.+.++.. .++|.+..+. +.
T Consensus 69 ~~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~l~~l~~---~~~k~f~~~~-~~ 143 (398)
T PRK04250 69 SGTKAALHGGITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAGNCEKAEEIKA---DFYKIFMGAS-TG 143 (398)
T ss_pred HHHHHHHhCCeEEEEECCCCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCCCHHHHHHHHh---hheEEEEecC-CC
Confidence 888888888874 44555555566677777777666554 468888887 44444555665532 2456554331 11
Q ss_pred HHHHHHH--HHHHHcCCEEEEEcCCCc------------cchHHHH--HHHHhcCCeEEEEecccCCCCCCHHHHHHhhh
Q 004611 497 AAIDNCL--TVAEEYDIQVNIHTDTLN------------ESGFVEH--TIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGV 560 (742)
Q Consensus 497 ~~l~~~l--~~A~e~g~~v~iH~dtln------------e~g~ve~--~l~a~~g~~ih~~H~~gaggghapdiI~~a~~ 560 (742)
......+ ..++ .+..+.+|++... |...+.. .+....+..+|+.|..... +.+.+ ++
T Consensus 144 ~~~~~~~~~~~~~-~~~~v~~H~E~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~lhi~HvSt~~---~~~~i---~~ 216 (398)
T PRK04250 144 GIFSENFEVDYAC-APGIVSVHAEDPELIREFPERPPEAEVVAIERALEAGKKLKKPLHICHISTKD---GLKLI---LK 216 (398)
T ss_pred chhHHHHHHHHHh-cCCeEEEEecChhhhhcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHH---HHHHH---HH
Confidence 1111122 1333 3556899996321 1011111 2345668899999998643 24444 33
Q ss_pred cCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH---Hhhh----hhhhhhhhHHHHHHHCCCeEEEecCCCc
Q 004611 561 KNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA---FAES----RIRAETIAAEDILHDMGAISIISSDSQA 633 (742)
Q Consensus 561 ~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia---~a~~----Rir~~t~a~~~~L~d~Gv~~~lgSDs~a 633 (742)
.++- ..++++ .+|||..+. +++. +++. |-+....++++.|. .+.+++||+.+
T Consensus 217 ~g~~--------~vt~Ev---------~ph~L~l~~-~~~~~~~~~k~~PPLR~~~d~~aL~~~l~---~Id~i~sDHaP 275 (398)
T PRK04250 217 SNLP--------WVSFEV---------TPHHLFLTR-KDYERNPLLKVYPPLRSEEDRKALWENFS---KIPIIASDHAP 275 (398)
T ss_pred cCCC--------cEEEEe---------CHHHhccCH-HHHCCCCceEEcCCCCCHHHHHHHHHhhc---cCCEEEcCCcc
Confidence 3320 133332 347776552 2221 1111 23345567777774 39999999865
Q ss_pred cCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC----
Q 004611 634 MGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF---- 709 (742)
Q Consensus 634 ~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~---- 709 (742)
.. ..+.. ..+.....+ +...++.+....+..++++++++++|.|||+++|+++ .| |++|+.|||+|+|++.
T Consensus 276 ~~-~~~k~-~~~~G~~g~-e~~lpl~~~~v~~~~lsl~~~v~~~t~npAk~lgl~~-~G-L~~G~~ADlvi~D~~~~~~v 350 (398)
T PRK04250 276 HT-LEDKE-AGAAGIPGL-ETEVPLLLDAANKGMISLFDIVEKMHDNPARIFGIKN-YG-IEEGNYANFAVFDMKKEWTI 350 (398)
T ss_pred cC-HHHhh-cCCCCcchH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC-cC-ccCCCcCCEEEEcCCCcEEE
Confidence 43 11110 011111111 2222333322235579999999999999999999964 69 9999999999999763
Q ss_pred -------------C-----CCCceEEEECCEEEecc
Q 004611 710 -------------F-----GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 710 -------------~-----~~~p~~Vi~~G~iV~~~ 727 (742)
| ..+|..||++|++||.+
T Consensus 351 ~~~~~~s~~~~sp~~g~~l~g~v~~tiv~G~~v~~~ 386 (398)
T PRK04250 351 KAEELYTKAGWTPYEGFKLKGKVIMTILRGEVVMED 386 (398)
T ss_pred ChhhccccCCCCCCCCCEEeeEEEEEEECCEEEEEC
Confidence 1 12678999999999985
No 81
>PRK09237 dihydroorotase; Provisional
Probab=99.92 E-value=3.6e-23 Score=229.39 Aligned_cols=322 Identities=20% Similarity=0.217 Sum_probs=189.7
Q ss_pred EEEEecEEEcCCC--ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc---
Q 004611 336 TVITNAVIIDHTG--IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP--- 410 (742)
Q Consensus 336 lVI~Na~Iid~~g--i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P--- 410 (742)
++|+|++|+|..+ ...++|.|+||||++|++.... ..++++||++|++|+|||||+|+|+...
T Consensus 1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~------------~~~~~~iD~~g~~v~PG~iD~H~H~~~~~~~ 68 (380)
T PRK09237 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDG------------SQAKKVIDLSGLYVSPGWIDLHVHVYPGSTP 68 (380)
T ss_pred CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCC------------CCCCeEEECCCCEEecCEEEeeecCCCCCCc
Confidence 4799999998543 4568999999999999874221 2366899999999999999999998532
Q ss_pred ---hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceE----eecCCC---C-----CCChHHH
Q 004611 411 ---QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNF----GFTGKG---N-----SAKPDEL 475 (742)
Q Consensus 411 ---~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~----g~~~~g---~-----~~~~~~l 475 (742)
.....++..|+||++..+. ....+...+........+.++.. .+.+.. . .-+.+.+
T Consensus 69 ~~~~~~~~~~~~G~Ttv~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 139 (380)
T PRK09237 69 YGDEPDEVGVRSGVTTVVDAGS---------AGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAV 139 (380)
T ss_pred cCCCHHHHHHhCCcCEEEECCC---------CCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHH
Confidence 2346678888888876442 01123344443333322333332 222211 1 1134556
Q ss_pred HHHHH---hcCceeEeccCCCCCH----HHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhc--CCeEEEEecccC
Q 004611 476 HEIIK---AGAMGLKLHEDWGSTP----AAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFK--GRTIHTYHSEGA 546 (742)
Q Consensus 476 ~e~i~---aGa~glkl~~d~~~t~----~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~--g~~ih~~H~~ga 546 (742)
+++++ .|..|+|....|...+ +.......++.+.+.++.+|++..... .++..+... ....|.++....
T Consensus 140 ~~~~~~~~~~v~glk~~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~--~~~l~~~l~~g~~~~H~~~~~~~ 217 (380)
T PRK09237 140 AEAVKRNPDFIVGIKARMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPS--LEEILELLRPGDILTHCFNGKPN 217 (380)
T ss_pred HHHHHhCcCcEEEEEEEEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCC--HHHHHhhccCCCEEEecCCCCCC
Confidence 66664 4688999877663221 344555566779999999999543322 333333222 234455543210
Q ss_pred ----CCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeecc-CCCchHHHHHhhhhhhhhhhhHHHHHHHC
Q 004611 547 ----GGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHL-HKDIPEDVAFAESRIRAETIAAEDILHDM 621 (742)
Q Consensus 547 ----ggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl-~~~~~edia~a~~Rir~~t~a~~~~L~d~ 621 (742)
..+...+.+..+...++. +...|.. .... .....+.+.
T Consensus 218 ~~~~~~~~~~~~a~~~l~~G~~---------------------~~ig~g~~~~~~----------------~~~~~l~~~ 260 (380)
T PRK09237 218 RILDEDGELRPSVLEALERGVR---------------------LDVGHGTASFSF----------------KVAEAAIAA 260 (380)
T ss_pred CccCCCCcchHHHHHHHHCCEE---------------------EEecCCCCcccH----------------HHHHHHHHC
Confidence 001111222222222221 1122322 1110 111123355
Q ss_pred CC-eEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcc
Q 004611 622 GA-ISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLA 700 (742)
Q Consensus 622 Gv-~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~A 700 (742)
|+ ..+++||..+...........+....++. ..+++++++++++|.|||+++|++ .+|+|++||.|
T Consensus 261 g~~~~~l~tD~~~~~~~~~~~~~l~~~~~~~~------------~~g~~~~~al~~aT~n~A~~lgl~-~~G~l~~G~~A 327 (380)
T PRK09237 261 GILPDTISTDIYCRNRINGPVYSLATVMSKFL------------ALGMPLEEVIAAVTKNAADALRLP-ELGRLQVGSDA 327 (380)
T ss_pred CCCceEEECCCCCCCcccchHhHHHHHHHHHH------------HhCCCHHHHHHHHHHHHHHHcCCC-CCCcCCCCCcC
Confidence 75 55899996432211111111222222221 237999999999999999999994 58999999999
Q ss_pred eEEEECCCC--------C--------CCCceEEEECCEEEeccCCC
Q 004611 701 DLVLWKPSF--------F--------GAKPEMVIKGGAIAWANMGD 730 (742)
Q Consensus 701 DLVV~Dp~~--------~--------~~~p~~Vi~~G~iV~~~~g~ 730 (742)
||++|+... . ..+|+.||++|+++|...+-
T Consensus 328 Dlvv~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~v~G~~~~~~~~~ 373 (380)
T PRK09237 328 DLTLFTLKDGPFTLTDSEGDSLIGERLLTPLATVRGGKVVLTEQGS 373 (380)
T ss_pred CEEEEeCCCCCccccCCCCCEEEecCCCcceEEEECCEEEEccCcc
Confidence 999998422 1 13889999999999887653
No 82
>PRK05985 cytosine deaminase; Provisional
Probab=99.92 E-value=7.2e-23 Score=227.84 Aligned_cols=330 Identities=19% Similarity=0.218 Sum_probs=193.8
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC----
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC---- 409 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~---- 409 (742)
.|++|+|++|+++. ..+|.|+||+|++|++...+ ..+.++||++|++|+|||||+|+|+..
T Consensus 2 ~~~~i~~~~i~~~~---~~~v~i~~g~i~~i~~~~~~------------~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~ 66 (391)
T PRK05985 2 TDLLFRNVRPAGGA---AVDILIRDGRIAAIGPALAA------------PPGAEVEDGGGALALPGLVDGHIHLDKTFWG 66 (391)
T ss_pred CCEEEECcEECCCC---eeEEEEECCEEEEecCCCCC------------CCCCcEEECCCCEEecceEeeEEccCccccC
Confidence 57899999999864 45999999999999985321 235679999999999999999999721
Q ss_pred -ch-------------------------HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCC----CCc
Q 004611 410 -PQ-------------------------LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDD----LPL 459 (742)
Q Consensus 410 -P~-------------------------~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~----~~v 459 (742)
+. ........++..++..|++..-.-.......+...++.+++..+. ..+
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (391)
T PRK05985 67 DPWYPNEPGPSLRERIANERRRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDI 146 (391)
T ss_pred CccccCCCCCCHHHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccE
Confidence 00 111222333344444444311000000011122233334333322 233
Q ss_pred eEe-ecCCCCCC---ChHHHHHHHHhcCc---eeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCccch--HHHHHH
Q 004611 460 NFG-FTGKGNSA---KPDELHEIIKAGAM---GLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESG--FVEHTI 530 (742)
Q Consensus 460 n~g-~~~~g~~~---~~~~l~e~i~aGa~---glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g--~ve~~l 530 (742)
++. |...+... ..+.+++..+.|+. ++.++....++++.+..++++|+++|+++.+|++...+.+ .++..+
T Consensus 147 ~~v~~~~~g~~~~~~~~~ll~~~l~~g~~~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~ 226 (391)
T PRK05985 147 QIVAFPQSGVLSRPGTAELLDAALRAGADVVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIA 226 (391)
T ss_pred EEEeccCccccCCcCHHHHHHHHHHcCCCEEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHH
Confidence 333 22222212 24567777777753 3334455667889999999999999999999995433221 222333
Q ss_pred HHh--cC--CeEEEEecccCCCCCC----HHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHH
Q 004611 531 AAF--KG--RTIHTYHSEGAGGGHA----PDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAF 602 (742)
Q Consensus 531 ~a~--~g--~~ih~~H~~gagggha----pdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~ 602 (742)
+.. .| ...++.|....+. .. .+.++.+++.++..+ .| ..
T Consensus 227 e~~~~~g~~~~~~i~H~~~l~~-~~~~~~~~~i~~lae~g~~v~---------------------~~--~~--------- 273 (391)
T PRK05985 227 ARTRALGMQGRVAVSHAFCLGD-LPEREVDRLAERLAEAGVAIM---------------------TN--AP--------- 273 (391)
T ss_pred HHHHHhCCCCCEehhhhhhhhc-CCHHHHHHHHHHHHHcCCeEE---------------------Ee--CC---------
Confidence 221 12 2456777654321 11 244566666654211 11 10
Q ss_pred hhhhhhhhhhhHHHHHHHCCCeEEEecCCCc--cCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHH
Q 004611 603 AESRIRAETIAAEDILHDMGAISIISSDSQA--MGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTIN 680 (742)
Q Consensus 603 a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a--~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiN 680 (742)
....+.+...|.+.|+.+++|||+.. +..++. ...|.......... .+ ....++.++|+++|.|
T Consensus 274 -----~~~~~~~~~~l~~~Gv~v~lGtD~~~~~~~p~~~--~~~~~~~~~~~~~~-~~------~~~~~~~~al~~~T~~ 339 (391)
T PRK05985 274 -----GSVPVPPVAALRAAGVTVFGGNDGIRDTWWPYGN--GDMLERAMLIGYRS-GF------RTDDELAAALDCVTHG 339 (391)
T ss_pred -----CCCCCCCHHHHHHCCCeEEEecCCCCCCCcCCCC--CcHHHHHHHHHHHH-cc------CChHHHHHHHHHHcch
Confidence 01234566778888999999999742 111111 01111111000000 01 1122478999999999
Q ss_pred HHHHcCCCCCcccccCCCcceEEEECCCCCC------CCceEEEECCEEEecc
Q 004611 681 PAIANGFSQFVGSVEVGKLADLVLWKPSFFG------AKPEMVIKGGAIAWAN 727 (742)
Q Consensus 681 pA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~------~~p~~Vi~~G~iV~~~ 727 (742)
+|+++|+++ ++|++||.||||+||.+++. ..+..||++|++||++
T Consensus 340 ~A~~lg~~~--~~l~~G~~ADlvvld~~~~~~~~~~~~~~~~v~~~G~~v~~~ 390 (391)
T PRK05985 340 GARALGLED--YGLAVGARADFVLVDAETVAEAVVAVPVRRLVVRGGRIVARD 390 (391)
T ss_pred hHHHhCCcc--cCCCCCCcCCEEEECCCCHHHHHhhCCcceEEEECCEEEecC
Confidence 999999976 46999999999999988753 2457799999999975
No 83
>PRK00369 pyrC dihydroorotase; Provisional
Probab=99.91 E-value=1.6e-23 Score=232.64 Aligned_cols=319 Identities=17% Similarity=0.168 Sum_probs=212.7
Q ss_pred eEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEec-CCCEEeecceeeccCCCCchH-HHHHHHHHHHHHHhCCC
Q 004611 352 ADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAG-ERFIVTAGAIDCHVHFICPQL-AHDAIASGITTLVGGGT 429 (742)
Q Consensus 352 adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa-~G~iVtPGfID~HvH~~~P~~-~~~al~~GvTTl~~gGt 429 (742)
..|.|++|+|..|++.. ..++++||+ +|++|+|||||+|+|+..|.+ .++.+.+|+..++.||+
T Consensus 14 ~~~~~~~~~~~~i~~~~--------------~~~~~~id~~~G~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGv 79 (392)
T PRK00369 14 EIKEICINFDRRIKEIK--------------SRCKPDLDLPQGTLILPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGV 79 (392)
T ss_pred ceEEEeeeeeeeEeecc--------------CCCCceeecCCCCEEeCCEEEcccccCCCCCcccccHHHHHHHHHhCCc
Confidence 46778889998887741 246789999 699999999999999998764 47899999999999998
Q ss_pred C-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHH
Q 004611 430 G-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAE 507 (742)
Q Consensus 430 g-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~ 507 (742)
+ ..+.++..+.......++...+.++. ..++|++++.. ....+ ++.+.|+.|+|.+.+.... ...++.+.
T Consensus 80 Ttv~~mPnt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~-~~~~~---el~~~~~~g~k~f~~~~~~----~~~~~~~~ 151 (392)
T PRK00369 80 TLVADMPNTIPPLNTPEAITEKLAELEYYSRVDYFVYSGV-TKDPE---KVDKLPIAGYKIFPEDLER----EETFRVLL 151 (392)
T ss_pred EEEEECCCCCCCCChHHHHHHHHHHhCcCCeEEEEEEeec-cCCHH---HHHHhhCceEEEECCCCch----HHHHHHHH
Confidence 4 56666666666777778777776554 46888888633 23333 4444578889988643322 33445555
Q ss_pred HcCCEEEEEcCCCcc-----c----hHHHH----HHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCC
Q 004611 508 EYDIQVNIHTDTLNE-----S----GFVEH----TIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPY 574 (742)
Q Consensus 508 e~g~~v~iH~dtlne-----~----g~ve~----~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~ 574 (742)
+++..+.+|++...- . ...|. ....+ .++|+.|... .+.+..++..++
T Consensus 152 ~~~~~v~~HaE~~~l~~~~~~~~rp~~aE~~ai~~~~~~--~~lhi~HvSt------~~~v~~ak~~gv----------- 212 (392)
T PRK00369 152 KSRKLKILHPEVPLALKSNRKLRRNCWYEIAALYYVKDY--QNVHITHASN------PRTVRLAKELGF----------- 212 (392)
T ss_pred HhCCEEEEeCCCHHHhhcchhcccCHHHHHHHHHHHHHh--CCEEEEECCC------HHHHHHHHHCCC-----------
Confidence 666999999964210 0 00011 01112 6799999986 445666665543
Q ss_pred cchhhhhhcceEEEeeccCCCchHHHHHhhh----hhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhh
Q 004611 575 TSNTIDEHLDMLMVCHHLHKDIPEDVAFAES----RIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHK 650 (742)
Q Consensus 575 t~~tl~e~ld~l~v~hhl~~~~~edia~a~~----Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~ 650 (742)
++++ .+|||..+.. +-.+++. |-.....++++.|.+ +.+++||+.+.. ..+.....|..+..
T Consensus 213 t~Ev---------~pHhL~l~~~-~~~~~k~~PPLR~~~dr~aL~~~l~~---id~i~SDHaP~~-~~~K~~~f~~~~~G 278 (392)
T PRK00369 213 TVDI---------TPHHLLVNGE-KDCLTKVNPPIRDINERLWLLQALSE---VDAIASDHAPHS-SFEKLQPYEVCPPG 278 (392)
T ss_pred eEEe---------chhHheeccC-CCCceEEeCCCCCHHHHHHHHHHHHh---CCEEEeCCCCCC-HHHccCCHhhCCCC
Confidence 2221 3466644321 1111211 334556788999988 889999986543 22222223433333
Q ss_pred hh--hhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC--------------C----
Q 004611 651 MK--SQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF--------------F---- 710 (742)
Q Consensus 651 m~--~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~--------------~---- 710 (742)
+. +...++.+......+++++++++++|.|||+++|+. .|.|++|+.||||+||++. |
T Consensus 279 i~GlE~~lpll~~~v~~~~lsl~~~v~~~s~nPA~ilgl~--~g~i~~G~~ADlvi~d~~~~~~~~~~sk~~~sp~~G~~ 356 (392)
T PRK00369 279 IAALSFTPPFIYTLVSKGILSIDRAVELISTNPARILGIP--YGEIKEGYRANFTVIQFEDWRYSTKYSKVIETPLDGFE 356 (392)
T ss_pred CeeHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEEeCCceeEccccccCCCCCCCCCE
Confidence 21 223333333224667999999999999999999996 4889999999999999863 2
Q ss_pred -CCCceEEEECCEEEecc
Q 004611 711 -GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 711 -~~~p~~Vi~~G~iV~~~ 727 (742)
..+|..||++|++||.+
T Consensus 357 l~G~v~~ti~~G~~v~~~ 374 (392)
T PRK00369 357 LKASVYATIVQGKLAYLE 374 (392)
T ss_pred eeeEEEEEEECCEEEEEC
Confidence 23889999999999974
No 84
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.91 E-value=1.7e-22 Score=224.36 Aligned_cols=333 Identities=19% Similarity=0.180 Sum_probs=185.1
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC----
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC---- 409 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~---- 409 (742)
|+++|+|++|++.+....++|.|+||+|++|++..... ....+.++||++|++|+|||||+|+|+..
T Consensus 1 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~v~~~~~~~---------~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~ 71 (388)
T PRK10657 1 MFTLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIP---------DIVPDIEVIDASGKILVPGFIDQHVHIIGGGGE 71 (388)
T ss_pred CeEEEEccEEECCCCCcceEEEEECCEEEEecCCcccc---------ccCCCCeEEECCCCEEcccceeeeeCcccCCCC
Confidence 46899999999977666789999999999998742210 01245689999999999999999999751
Q ss_pred ch--------HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEe-ecCCCCCCC---hHHHHH
Q 004611 410 PQ--------LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFG-FTGKGNSAK---PDELHE 477 (742)
Q Consensus 410 P~--------~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g-~~~~g~~~~---~~~l~e 477 (742)
+. .+.+++..|+||+++. ++..........+....+.....+++.. +.+....+. .+.+.+
T Consensus 72 ~~~~~~t~~~~~~~~~~~GvTTvvd~-------~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~~ 144 (388)
T PRK10657 72 GGFSTRTPEVQLSDLTEAGITTVVGL-------LGTDGITRSMESLLAKARALEEEGISAYMYTGSYHVPVRTITGSIRK 144 (388)
T ss_pred cccccCCHHHHHHHHHhCCceEEECC-------CCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecCCCCCchhhhcchhh
Confidence 11 2356677777777652 1111222233344455555555566544 222111110 011111
Q ss_pred ------HHH-hcCceeEeccCCCCCHHHHHHHHHHHHHcCC------EEEEEcC-CCccchHHHHHHHH--hcCCeEEEE
Q 004611 478 ------IIK-AGAMGLKLHEDWGSTPAAIDNCLTVAEEYDI------QVNIHTD-TLNESGFVEHTIAA--FKGRTIHTY 541 (742)
Q Consensus 478 ------~i~-aGa~glkl~~d~~~t~~~l~~~l~~A~e~g~------~v~iH~d-tlne~g~ve~~l~a--~~g~~ih~~ 541 (742)
.+. .|..++..|..+.++++.+.++.+.++..+. ++++|+. +.. .++...+. -.|...+.+
T Consensus 145 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~---~l~~v~~~l~~~Gv~~~~~ 221 (388)
T PRK10657 145 DIVLIDKVIGVGEIAISDHRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKK---GLQPLFELLENTDIPISQF 221 (388)
T ss_pred ceehhhhhhCcceeeeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchH---HHHHHHHHHHhcCCCccee
Confidence 111 1233445566677888998888888876554 7889974 221 12322111 123332222
Q ss_pred ecccCCC-CCC-HHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhh-hHHHHH
Q 004611 542 HSEGAGG-GHA-PDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETI-AAEDIL 618 (742)
Q Consensus 542 H~~gagg-gha-pdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~-a~~~~L 618 (742)
....... +.. .+.++.++... ++..++..+.... .-..... ..++.+
T Consensus 222 ~~~H~~~~~~~~~~~~~~~~~G~-----------------------~~~v~~~~~~~~~-------~~~~~~~~~l~~~~ 271 (388)
T PRK10657 222 LPTHVNRNEPLFEQALEFAKKGG-----------------------VIDLTTSDPDFLG-------EGEVAPAEALKRAL 271 (388)
T ss_pred eCcccCCCHHHHHHHHHHHHcCC-----------------------eEEEecCCCcccc-------cCccCHHHHHHHHH
Confidence 1111000 001 12222332211 1111111111000 0000111 233444
Q ss_pred HHCCC---eEEEecCCCccCcc----chhh----hhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCC
Q 004611 619 HDMGA---ISIISSDSQAMGRI----GEVI----SRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGF 687 (742)
Q Consensus 619 ~d~Gv---~~~lgSDs~a~gr~----ge~i----~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl 687 (742)
+.|. .++++||+...... |... .........+.... ...+++++++++++|.|||+++|+
T Consensus 272 -~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~~~~~~--------~~~gis~~~~l~~aT~npA~~lg~ 342 (388)
T PRK10657 272 -EAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEEVRELV--------KDEGLPLEDALKPLTSNVARFLKL 342 (388)
T ss_pred -HcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHHHhCC
Confidence 5598 67999996321100 0000 00000111111100 134899999999999999999999
Q ss_pred CCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEeccC
Q 004611 688 SQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 688 ~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~ 728 (742)
++ +|+|++|+.|||++||.+ .++..||++|++|+.+.
T Consensus 343 ~~-~G~l~~G~~AD~vv~~~~---~~~~~~~~~G~~v~~~~ 379 (388)
T PRK10657 343 NG-KGEILPGKDADLLVLDDD---LRIEQVIAKGKLMVKDG 379 (388)
T ss_pred CC-CCccCCCCccCEEEECCC---CCEEEEEECCEEEEECC
Confidence 87 899999999999999943 58999999999999864
No 85
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.91 E-value=6.3e-23 Score=227.66 Aligned_cols=331 Identities=19% Similarity=0.188 Sum_probs=196.9
Q ss_pred EEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC-------
Q 004611 336 TVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI------- 408 (742)
Q Consensus 336 lVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~------- 408 (742)
++|+|++|++++.+...+|+|+||||++|++..++.. ......+++|++|++|+|||||+|+|+.
T Consensus 2 ~li~n~~v~~~~~~~~~dvlI~~gkI~~Ig~~~~~~~--------~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~ 73 (389)
T TIGR01975 2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTK--------DFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGG 73 (389)
T ss_pred EEEECcEEEcCCcCcceeEEEECCEEEEEcCCccccc--------cCCCCeEEECCCCCEEccCEeehhhccccccccCC
Confidence 5899999999766666899999999999998643210 0012334566799999999999999973
Q ss_pred ----Cch-HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEee-cCCCC-------CCChHHH
Q 004611 409 ----CPQ-LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGF-TGKGN-------SAKPDEL 475 (742)
Q Consensus 409 ----~P~-~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~-~~~g~-------~~~~~~l 475 (742)
.|+ .+.+++++|+||+++.+- + ...+....++....++....+++... .+... .+...++
T Consensus 74 ~~~~~~e~~~~e~l~~GvTTv~d~~g-----~--~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~ 146 (389)
T TIGR01975 74 PTTRTPELTLSDITKGGVTTVVGLLG-----T--DGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDL 146 (389)
T ss_pred CccCCHHHHHHHHHhCCcEEEecCcc-----c--CccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhhe
Confidence 122 256778899999886321 0 11122233333455555556655332 22111 1112222
Q ss_pred ---HHHHHhcCceeEeccCCCCCHHHHHHHHHHHHHcC----CE--EEEEcCCCccchHHHHHHHHh--cCCeEEEEecc
Q 004611 476 ---HEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYD----IQ--VNIHTDTLNESGFVEHTIAAF--KGRTIHTYHSE 544 (742)
Q Consensus 476 ---~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e~g----~~--v~iH~dtlne~g~ve~~l~a~--~g~~ih~~H~~ 544 (742)
.+.+--|...+.-|-....+.+.+..+.+.|+..+ .+ +++|.-.. ...++..++.. .+.++|.|+-.
T Consensus 147 ~~~d~iiG~~~ia~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~--~~~l~~l~~~~~~~di~~~~f~pt 224 (389)
T TIGR01975 147 LLIDKVIGVGEIAISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDS--KRALQPIYELVENTDVPITQFLPT 224 (389)
T ss_pred eeehhhcccceEEEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc--hhhHHHHHHHHHhcCCChhheecC
Confidence 11111112334444455678899999999999998 88 99998422 22355555544 34577777755
Q ss_pred cCCC--CCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCC
Q 004611 545 GAGG--GHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMG 622 (742)
Q Consensus 545 gagg--ghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~G 622 (742)
.... .--++.++.+++.+.+.... +++...+. +.. .......+.+.+.|
T Consensus 225 h~~r~~~l~~~~i~~~~~gg~iDv~~----~~~~~~l~----------~~~---------------~~~~~~~~~~~~~G 275 (389)
T TIGR01975 225 HINRNVPLFEAGLEFAKKGGTIDLTS----SIDPQFRK----------EGE---------------VAPAEGIKKALEAG 275 (389)
T ss_pred ccCCCHHHHHHHHHHHHhCCcEEEeC----CCCccchh----------ccc---------------cChHHHHHHHHHcC
Confidence 3221 01134455555544321110 11110000 000 00111335567789
Q ss_pred Ce---EEEecCCCccCcc----chhhh-------hhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 623 AI---SIISSDSQAMGRI----GEVIS-------RTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 623 v~---~~lgSDs~a~gr~----ge~i~-------~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
+. ++++||....... |..+. ..+.....+. ...+++++++|+++|.|||+++|++
T Consensus 276 v~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~~sl~~~~~~lv-----------~~g~ls~~eal~~~T~npA~~Lgl~ 344 (389)
T TIGR01975 276 VPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETLFEEVREAV-----------KDGDVPLEKALRVITSNVAGVLNLT 344 (389)
T ss_pred CCcceEEEEeCCCCCCCccccccccccCCcCcHHHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHHHhCCC
Confidence 86 4999997521111 00000 0111111111 1335999999999999999999997
Q ss_pred CCcccccCCCcceEEEECCCCCCCCceEEEECCEEEecc
Q 004611 689 QFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 689 d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~ 727 (742)
.+|+|++|+.|||++||++ .++..||++|++++.+
T Consensus 345 -~~G~I~~G~~ADlvild~~---~~i~~v~~~G~~v~~~ 379 (389)
T TIGR01975 345 -GKGEISPGNDADLVVLDPD---LRIHSVIARGKLMVKD 379 (389)
T ss_pred -CCCeECCCCcCCEEEEcCC---CCEEEEEECCEEEEEC
Confidence 5899999999999999988 6788999999988764
No 86
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=7.4e-23 Score=220.96 Aligned_cols=335 Identities=19% Similarity=0.210 Sum_probs=205.2
Q ss_pred EEEEecEEEcCCCcee-eEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC-----
Q 004611 336 TVITNAVIIDHTGIFK-ADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC----- 409 (742)
Q Consensus 336 lVI~Na~Iid~~gi~~-adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~----- 409 (742)
.+|+|++|+++.++.+ +.+.|+||+|.+|.+. + .+...+++|.+|.+|+|||||+|+|-..
T Consensus 2 ~~~~~~~i~t~~~~~~~~~v~i~dg~I~~i~~~-~------------~p~~~e~id~~G~~l~PGfID~hihG~gG~~~~ 68 (380)
T COG1820 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVPA-E------------LPADAEIIDLKGALLVPGFIDLHIHGGGGADFM 68 (380)
T ss_pred ceeeccEEEcCcceEECcEEEEcCCEEEEEecC-c------------CCCcceeecCCCCEecccEEEEeecCcCccccc
Confidence 4799999999999766 5999999999999982 1 2568899999999999999999999631
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCC-----CCceEeecCCCC----------------
Q 004611 410 PQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDD-----LPLNFGFTGKGN---------------- 468 (742)
Q Consensus 410 P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~-----~~vn~g~~~~g~---------------- 468 (742)
.....+.+..-.......|++ .-.+|+.+...+.+.+.++.... .+--.|++.+|.
T Consensus 69 D~~~~~~l~~i~~~~~~~GtT---sfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~~kkGAh~~~~ir 145 (380)
T COG1820 69 DAGSVETLETMAEAHLRHGTT---SFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSPEKKGAHNPEYIR 145 (380)
T ss_pred CccCHHHHHHHHHHhhhcCee---eeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEEeecCccCHhhccCCCHHHhC
Confidence 111223333333334444441 11246667777777766654322 223345554443
Q ss_pred CCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHHcCCEEEE-EcCCCccchHHHHHHHHhcCCeEEEEecccCC
Q 004611 469 SAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNI-HTDTLNESGFVEHTIAAFKGRTIHTYHSEGAG 547 (742)
Q Consensus 469 ~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~i-H~dtlne~g~ve~~l~a~~g~~ih~~H~~gag 547 (742)
.++.+.++++.+.....++...--. ....-.+.++.+.+.|+.+++ |++...+ .....+++......|.|..+...
T Consensus 146 ~~~~~~~~~~~~~a~g~i~~vTlAP-E~~~~~e~i~~l~~~giivs~GHS~Atye--~~~~a~~~Ga~~~THlfNaMs~l 222 (380)
T COG1820 146 PPDPEELEQLIAAADGLIKLVTLAP-ELDGTKELIRLLANAGIVVSIGHSNATYE--QARAAFEAGATFVTHLFNAMSGL 222 (380)
T ss_pred CCCHHHHHHHHhhccCceEEEEECC-CCCCCHHHHHHHHhCCeEEEecCccccHH--HHHHHHHhCccEEEeeccCCCCC
Confidence 2456677777654332333322111 111114555667789999998 9864322 13334444444566777776666
Q ss_pred CCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHC-CCeEE
Q 004611 548 GGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDM-GAISI 626 (742)
Q Consensus 548 gghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~-Gv~~~ 626 (742)
.+++|.++-++-... .. +.+++..-+|+++...... ++.. +-.+.
T Consensus 223 ~hREPGvvGA~L~~~----------~~-------~~eiIaDG~HVhP~~~~ia-----------------~~~kg~~~i~ 268 (380)
T COG1820 223 HHREPGVVGAALDNP----------DV-------YAEIIADGVHVHPAAIRLA-----------------LKAKGGDKIV 268 (380)
T ss_pred CCCCCcccceeecCC----------Ce-------EEEEEccCcccCHHHHHHH-----------------HhccCCceEE
Confidence 666666665543211 01 2233444478876432211 1112 33678
Q ss_pred EecCCCccCccchhhhhh----hhhh-hhhhhhccccCCCcc----------cCCCCcHHHHHHHHHHHHHHHcCCCCCc
Q 004611 627 ISSDSQAMGRIGEVISRT----WQTA-HKMKSQRGSFGPSAA----------DNDNLRIRRYIAKYTINPAIANGFSQFV 691 (742)
Q Consensus 627 lgSDs~a~gr~ge~i~~~----~~~~-~~m~~~~~~L~~~~~----------~~~gl~~~~aL~~aTiNpA~~lGl~d~v 691 (742)
+.||+.+..-.++..... -... .......+.|.++.. ...++++.+|++|+|.|||+++|+++++
T Consensus 269 LVTDam~a~G~~dg~y~lgg~~V~v~~g~~~~~~GtLAGS~Ltm~~avrn~v~~~~~~~~eAv~maS~~PA~~lgl~~~~ 348 (380)
T COG1820 269 LVTDAMAAAGLPDGEYILGGQTVTVADGARRLEDGTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALGLDDRL 348 (380)
T ss_pred EEEccccccCCCCccEEECCEEEEEECCEEECCCCceeeeeeeHHHHHHHHHHHhCCCHHHHHHHhhhhHHHHhCCcCcc
Confidence 888875433221100000 0000 011112334443332 4568999999999999999999999999
Q ss_pred ccccCCCcceEEEECCCCCCCCceEEEECCEEEec
Q 004611 692 GSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWA 726 (742)
Q Consensus 692 GSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~ 726 (742)
|+|++||.||||+||.+ .++..||++|++++.
T Consensus 349 G~i~~G~~Adlvvld~d---~~v~~T~i~G~~~~~ 380 (380)
T COG1820 349 GSIKPGKDADLVVLDDD---LNVKATWINGEKVFN 380 (380)
T ss_pred cccCCCcccCEEEECCC---CcEEEEEECCEEeeC
Confidence 99999999999999999 889999999999873
No 87
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.91 E-value=1.2e-22 Score=224.57 Aligned_cols=310 Identities=20% Similarity=0.194 Sum_probs=178.2
Q ss_pred ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc---h--------------
Q 004611 349 IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP---Q-------------- 411 (742)
Q Consensus 349 i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P---~-------------- 411 (742)
+.+++|.|+||+|++||+.... ....+.++||++|++|+|||||+|+|+... .
T Consensus 1 ~~~~~v~i~~g~I~~vg~~~~~----------~~~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~ 70 (377)
T TIGR01224 1 IEDAVILIHGGKIVWIGQLAAL----------PGEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLE 70 (377)
T ss_pred CCceEEEEECCEEEEEechhhC----------CcccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHH
Confidence 3568999999999999984321 111366899999999999999999997410 0
Q ss_pred ---------------------HHHHHHHHHHHHHHhCCCCCCCCCcccccCC--ChHHHHHHHHhcCCCCceEeec---C
Q 004611 412 ---------------------LAHDAIASGITTLVGGGTGPADGTRATTCTP--APSQMKLMLQSTDDLPLNFGFT---G 465 (742)
Q Consensus 412 ---------------------~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~--~~~~i~~~l~a~~~~~vn~g~~---~ 465 (742)
........++..++..|++-.+......... ....++.+.+...+.++...+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~ 150 (377)
T TIGR01224 71 ILAQGGGILSTVRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTTFLGA 150 (377)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeec
Confidence 0011222233444555653221100000000 0112222333333444443321 1
Q ss_pred CCCC----CChH---------HHHHHHHhc-CceeEeccC-CCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHH
Q 004611 466 KGNS----AKPD---------ELHEIIKAG-AMGLKLHED-WGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTI 530 (742)
Q Consensus 466 ~g~~----~~~~---------~l~e~i~aG-a~glkl~~d-~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l 530 (742)
.... .... .+++..+.+ +.+++.... ...+++.+.++++.|+++|+++.+|+......+.++...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~ 230 (377)
T TIGR01224 151 HAVPPEFQGRPDDYVDGICEELIPQVAEEGLASFADVFCEAGVFSVEQSRRILQAAQEAGLPVKLHAEELSNLGGAELAA 230 (377)
T ss_pred ccCCccccCCHHHHHHHHHHHHHHHHHHhCCCCeeEEEecCCCcCHHHHHHHHHHHHHCCCCEEEEecCCCCCCHHHHHH
Confidence 0100 1110 112222223 445554432 234688999999999999999999995332223344443
Q ss_pred HHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhh
Q 004611 531 AAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAE 610 (742)
Q Consensus 531 ~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~ 610 (742)
....-+..|..+. .++.++..++.++..+.+ |+..+. ...
T Consensus 231 ~~g~~~~~H~~~~-------~~~~l~~la~~g~~~~~~-P~~~~~--------------------------------l~~ 270 (377)
T TIGR01224 231 KLGAVSADHLEHA-------SDAGIKALAEAGTVAVLL-PGTTFY--------------------------------LRE 270 (377)
T ss_pred HcCCCccHHHhcC-------CHHHHHHHHhcCCEEEEC-chHHHh--------------------------------cCC
Confidence 3211122244443 478888888877643222 211100 001
Q ss_pred hhhHHHHHHHCCCeEEEecCCCc-cCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCC
Q 004611 611 TIAAEDILHDMGAISIISSDSQA-MGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQ 689 (742)
Q Consensus 611 t~a~~~~L~d~Gv~~~lgSDs~a-~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d 689 (742)
...+...|.+.|+.+++|||+.+ +.. ....+. .+.... ...++++.++++++|.|||+++|+++
T Consensus 271 ~~~p~~~l~~~Gv~v~lgTD~~~~~~~----~~~~~~---~~~~~~--------~~~~ls~~eal~~~T~~~A~~lg~~~ 335 (377)
T TIGR01224 271 TYPPARQLIDYGVPVALATDLNPGSSP----TLSMQL---IMSLAC--------RLMKMTPEEALHAATVNAAYALGLGE 335 (377)
T ss_pred cCccHHHHHHCCCCEEEECCCCCCCCh----hHHHHH---HHHHHH--------HhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 23345667788999999999632 211 001111 110000 13478999999999999999999998
Q ss_pred CcccccCCCcceEEEECCCCCC--------CCceEEEECCEE
Q 004611 690 FVGSVEVGKLADLVLWKPSFFG--------AKPEMVIKGGAI 723 (742)
Q Consensus 690 ~vGSIe~GK~ADLVV~Dp~~~~--------~~p~~Vi~~G~i 723 (742)
++|+|++||.||||+||.+.+. .++..||++|++
T Consensus 336 ~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~v~~v~v~G~~ 377 (377)
T TIGR01224 336 ERGTLEAGRDADLVILSAPSYAEIPYHYGVNHVHAVIKNGNI 377 (377)
T ss_pred CceeeCCCCcCCEEEEcCCChHHhhhhcCCCCceEEEECCCC
Confidence 8999999999999999988642 379999999974
No 88
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.91 E-value=3.5e-22 Score=225.06 Aligned_cols=305 Identities=18% Similarity=0.175 Sum_probs=175.6
Q ss_pred ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC-------------------
Q 004611 349 IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC------------------- 409 (742)
Q Consensus 349 i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~------------------- 409 (742)
+.+++|.|+||+|++||+..+.. ...++++++||+.|++|+|||||+|+|+..
T Consensus 24 ~~~g~V~v~~g~I~~vG~~~~~~--------~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~ 95 (429)
T cd01303 24 VEDGLIVVVDGNIIAAGAAETLK--------RAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETY 95 (429)
T ss_pred ECCeEEEEECCEEEEeCchhhhh--------hhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhh
Confidence 45689999999999999853210 012356789999999999999999999721
Q ss_pred --ch--------HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEee----cCCC-CC---CC
Q 004611 410 --PQ--------LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGF----TGKG-NS---AK 471 (742)
Q Consensus 410 --P~--------~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~----~~~g-~~---~~ 471 (742)
|. ........++..++..|++-.. .............+++....+++..+ .... .. ..
T Consensus 96 ~~~~e~~~~~~~~~~~~a~~~~~e~l~~GvTtv~----d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~ 171 (429)
T cd01303 96 TFPEEAKFADPAYAREVYGRFLDELLRNGTTTAC----YFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDT 171 (429)
T ss_pred hhHHHHhcCCHHHHHHHHHHHHHHHHhCCceEEE----eecccChhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccC
Confidence 00 0111123344445555553111 00011223445555665555544322 1110 10 11
Q ss_pred hH----HHHHHH---Hh--cCc--eeEeccCCCCCHHHHHHHHHHHHHcC-CEEEEEc-CCCccchHHHHHHHHhc----
Q 004611 472 PD----ELHEII---KA--GAM--GLKLHEDWGSTPAAIDNCLTVAEEYD-IQVNIHT-DTLNESGFVEHTIAAFK---- 534 (742)
Q Consensus 472 ~~----~l~e~i---~a--Ga~--glkl~~d~~~t~~~l~~~l~~A~e~g-~~v~iH~-dtlne~g~ve~~l~a~~---- 534 (742)
.. ...+++ .. +.. ++.+|..+.++++.++++.++|++++ +++++|+ ++..+ ++.....+.
T Consensus 172 ~~~~~~~~~~~i~~~~~~~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e---~~~~~~~~g~~~~ 248 (429)
T cd01303 172 AESSYRDTKRLIERWHGKSGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDE---IAWVKELFPGARD 248 (429)
T ss_pred HHHHHHHHHHHHHHHhCcCCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHH---HHHHHHHcCCCCC
Confidence 11 111121 11 222 45567888899999999999999999 9999999 44433 222222211
Q ss_pred -----------CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHh
Q 004611 535 -----------GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFA 603 (742)
Q Consensus 535 -----------g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a 603 (742)
+......|.... .++.++.+++.++..+ .+|+..+.
T Consensus 249 p~~~l~~~G~l~~~~~l~H~~~l----~~~~~~~l~~~g~~v~-~~P~sn~~---------------------------- 295 (429)
T cd01303 249 YLDVYDKYGLLTEKTVLAHCVHL----SEEEFNLLKERGASVA-HCPTSNLF---------------------------- 295 (429)
T ss_pred HHHHHHHCCCCCCCcEEEeCCCC----CHHHHHHHHHcCCEEE-ECccchhh----------------------------
Confidence 223344454433 3677777777665311 12211100
Q ss_pred hhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHH
Q 004611 604 ESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAI 683 (742)
Q Consensus 604 ~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~ 683 (742)
....+++...+.+.|+.+.+|||+.+... .+.+...+. ........ ........+++++++++++|+|||+
T Consensus 296 ----l~~g~~~~~~~~~~Gv~v~lGtD~~~~~~-~d~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~al~~aT~~gA~ 366 (429)
T cd01303 296 ----LGSGLFDVRKLLDAGIKVGLGTDVGGGTS-FSMLDTLRQ-AYKVSRLL---GYELGGHAKLSPAEAFYLATLGGAE 366 (429)
T ss_pred ----hccCCCCHHHHHHCCCeEEEeccCCCCCC-ccHHHHHHH-HHHHHHhh---ccccCCcCCCCHHHHHHHHhhHHHH
Confidence 11234456677888999999999753211 111111111 11110000 0000124578999999999999999
Q ss_pred HcCCCCCcccccCCCcceEEEECCCCC
Q 004611 684 ANGFSQFVGSVEVGKLADLVLWKPSFF 710 (742)
Q Consensus 684 ~lGl~d~vGSIe~GK~ADLVV~Dp~~~ 710 (742)
++|+++++|+|++||.||||++|.+.+
T Consensus 367 ~lg~~~~~Gsle~Gk~ADlvvld~~~~ 393 (429)
T cd01303 367 ALGLDDKIGNFEVGKEFDAVVIDPSAT 393 (429)
T ss_pred HcCCCCCCcCcCCCCccCEEEEcCCCc
Confidence 999998899999999999999997754
No 89
>PRK08418 chlorohydrolase; Provisional
Probab=99.90 E-value=2.4e-22 Score=224.93 Aligned_cols=320 Identities=16% Similarity=0.160 Sum_probs=180.6
Q ss_pred EEEEecEEEcCC---C-ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC--
Q 004611 336 TVITNAVIIDHT---G-IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC-- 409 (742)
Q Consensus 336 lVI~Na~Iid~~---g-i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~-- 409 (742)
++|+|++|++.+ . +.+++|.|+ |+|++||+..... ...++.++||+.|++|+|||||+|+|+..
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~---------~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~ 71 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLK---------KKYPNAKIQFFKNSVLLPAFINPHTHLEFSA 71 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHH---------hhCCCCcEEecCCcEEccCccccccchhhhh
Confidence 579999999755 2 356899999 9999999742110 01234568999999999999999999620
Q ss_pred -------------------------chHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeec
Q 004611 410 -------------------------PQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFT 464 (742)
Q Consensus 410 -------------------------P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~ 464 (742)
++....+...++..++..|++-..... .. ....++....+++..+.
T Consensus 72 ~rg~~~~~~~~~wl~~~~~~~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~----~~-----~~~~~a~~~~GiR~~~~ 142 (408)
T PRK08418 72 NKTTLDYGDFIPWLGSVINHREDLLEKCKGALIQQAINEMLKSGVGTIGAIS----SF-----GIDLEICAKSPLRVVFF 142 (408)
T ss_pred hccccCCCchHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHhcCceEEEEee----cc-----hhhHHHHHhcCCeEEEE
Confidence 011122334566666777763211000 00 11134555566554321
Q ss_pred ----CCCCC---CChHHHHHHHHh------c--CceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-CCCccchHHHH
Q 004611 465 ----GKGNS---AKPDELHEIIKA------G--AMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-DTLNESGFVEH 528 (742)
Q Consensus 465 ----~~g~~---~~~~~l~e~i~a------G--a~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-dtlne~g~ve~ 528 (742)
+.... ...+.+.+.++. + ..++.+|..+.++++.+.++.++|+++++++++|. ++..|..++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~ 222 (408)
T PRK08418 143 NEILGSNASAVDELYQDFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEE 222 (408)
T ss_pred eeeeCCCccchhhhHHHHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHh
Confidence 11100 111112212211 1 13667788999999999999999999999999999 44444222211
Q ss_pred H------------------------HHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcc
Q 004611 529 T------------------------IAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLD 584 (742)
Q Consensus 529 ~------------------------l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld 584 (742)
. ++.+.+...-..|.... .++.++..++.++.
T Consensus 223 ~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g~~~~~~~H~~~~----~~~di~~la~~g~~-------------------- 278 (408)
T PRK08418 223 SKGWFKKFFEKFLKEPKPLYTPKEFLELFKGLRTLFTHCVYA----SEEELEKIKSKNAS-------------------- 278 (408)
T ss_pred ccCchhhhhhhhcccccccCCHHHHHHHhCCCCeEEEecccC----CHHHHHHHHHcCCc--------------------
Confidence 0 00111111111121111 12222222222211
Q ss_pred eEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh-hhccccCCCcc
Q 004611 585 MLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK-SQRGSFGPSAA 663 (742)
Q Consensus 585 ~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~-~~~~~L~~~~~ 663 (742)
++|.... ..+ ....+++...+.+.|+.+++|||+.+.+... ..|..+.... .+++
T Consensus 279 ---v~~cP~s---------n~~-lg~g~~p~~~~~~~Gi~v~lGtD~~~~~~~~----~~~~em~~~~~~~~~------- 334 (408)
T PRK08418 279 ---ITHCPFS---------NRL-LSNKALDLEKAKKAGINYSIATDGLSSNISL----SLLDELRAALLTHAN------- 334 (408)
T ss_pred ---EEECHhH---------HHH-hcCCCccHHHHHhCCCeEEEeCCCCCCCCCc----CHHHHHHHHHHHhcc-------
Confidence 1111000 001 1223456667788899999999975432211 1121111100 1110
Q ss_pred cCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC--------------CCCceEEEECCEEE
Q 004611 664 DNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF--------------GAKPEMVIKGGAIA 724 (742)
Q Consensus 664 ~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~--------------~~~p~~Vi~~G~iV 724 (742)
.....+++++++++|.|+|+++|++ .|+|++||.||||++|.+.. ..++..||++|++|
T Consensus 335 ~~~~~~~~~~l~~aT~~gA~alg~~--~G~l~~G~~ADlv~~d~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v 407 (408)
T PRK08418 335 MPLLELAKILLLSATRYGAKALGLN--NGEIKEGKDADLSVFELPEECTKKEQLPLQFILHAKEVKKLFIGGKEV 407 (408)
T ss_pred CCccccHHHHHHHHHHHHHHHhCCC--CccccCCCccCEEEEeCCCCCCChhHhHHHHHhccCccceEEECCEEc
Confidence 0112347899999999999999996 69999999999999997621 23689999999987
No 90
>PRK07572 cytosine deaminase; Validated
Probab=99.90 E-value=4.4e-22 Score=224.08 Aligned_cols=344 Identities=20% Similarity=0.231 Sum_probs=194.6
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC----
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC---- 409 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~---- 409 (742)
++++|+|++|+++. ...+|.|+||+|.+|++... ....++||++|++|+|||||+|+|+..
T Consensus 2 ~~~~i~~~~i~~~~--~~~~i~i~~g~I~~v~~~~~-------------~~~~~~id~~g~~~~PG~id~h~h~~~~~~~ 66 (426)
T PRK07572 2 FDLIVRNANLPDGR--TGIDIGIAGGRIAAVEPGLQ-------------AEAAEEIDAAGRLVSPPFVDPHFHMDATLSY 66 (426)
T ss_pred CcEEEECeEECCCC--eeEEEEEECCEEEEecCCCC-------------CCcCceEeCCCCEEcccceehhhCcchhhcc
Confidence 57899999999854 35689999999999987522 135579999999999999999999721
Q ss_pred --------------------------chH--------HHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcC
Q 004611 410 --------------------------PQL--------AHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTD 455 (742)
Q Consensus 410 --------------------------P~~--------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~ 455 (742)
++. +.+++++|+|++..... . ..+....++.+.+...
T Consensus 67 ~~~~~~~~g~l~e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d----~-----~~~~~~~~~a~~~~~~ 137 (426)
T PRK07572 67 GLPRVNASGTLLEGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVD----V-----CDPRLLAVEALLEVRE 137 (426)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccc----c-----CCCcccHHHHHHHHHH
Confidence 112 23445555554443210 0 0111122333222221
Q ss_pred CCC--ce---EeecCCCC---CCChHHHHHHHHhcCc--eeEeccCCCCCH--HHHHHHHHHHHHcCCEEEEEc-CCCcc
Q 004611 456 DLP--LN---FGFTGKGN---SAKPDELHEIIKAGAM--GLKLHEDWGSTP--AAIDNCLTVAEEYDIQVNIHT-DTLNE 522 (742)
Q Consensus 456 ~~~--vn---~g~~~~g~---~~~~~~l~e~i~aGa~--glkl~~d~~~t~--~~l~~~l~~A~e~g~~v~iH~-dtlne 522 (742)
... +. ..+...+. ....+.++++++.|+. |..++.++.++. +.++.+++.|+++|+++.+|+ ++.++
T Consensus 138 ~~~~~~~~~~~a~~~~g~~~~~~~~~~~~~~l~~g~d~iGg~p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~ 217 (426)
T PRK07572 138 RVAPYLDLQLVAFPQDGVLRSPGAVDNLERALDMGVDVVGGIPHFERTMADGAESVRLLCEIAAERGLRVDMHCDESDDP 217 (426)
T ss_pred HhhccceEEEEeccChhhccCccHHHHHHHHHHcCCCEEeCCCCCccccchHHHHHHHHHHHHHHcCCCeEEEECCCCCh
Confidence 111 11 11111111 1224566777777754 323555555444 899999999999999999999 44443
Q ss_pred chH-HHHHH----HH-hcCCeEEEEecccCCC---CCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccC
Q 004611 523 SGF-VEHTI----AA-FKGRTIHTYHSEGAGG---GHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLH 593 (742)
Q Consensus 523 ~g~-ve~~l----~a-~~g~~ih~~H~~gagg---ghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~ 593 (742)
... ++... +. +.+ .+...|...... ....+.++..++.++..+.+ |+...... ..+..
T Consensus 218 ~~~~~~~~~~~~~~~G~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~~-P~~n~~l~----------~~~~~- 284 (426)
T PRK07572 218 LSRHIETLAAETQRLGLQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIAN-PLINITLQ----------GRHDT- 284 (426)
T ss_pred hHHHHHHHHHHHHHhCCCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEEC-chhhhhhc----------CCCCC-
Confidence 211 11111 11 223 455666643321 11235677777766532221 21110000 00000
Q ss_pred CCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCc--cCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHH
Q 004611 594 KDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQA--MGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIR 671 (742)
Q Consensus 594 ~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a--~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~ 671 (742)
......+.....|.+.|+.+++|||+.. ....+ ....+........ ...+ .....+.
T Consensus 285 ------------~~~~~g~~~v~~l~~~GV~v~lGtD~~~~~~~~~~--~~~~~e~~~~~~~-~~~~------~~~~~l~ 343 (426)
T PRK07572 285 ------------YPKRRGMTRVPELMAAGINVAFGHDCVMDPWYSLG--SGDMLEVAHMGLH-VAQM------TGQDAMR 343 (426)
T ss_pred ------------CCCCCCCcCHHHHHHCCCcEEEecCCCCCCCCCCC--CCCHHHHHHHHHH-HHcC------CCHHHHH
Confidence 0011234556678889999999999741 10110 0111111111000 0000 0112356
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECC-CCC-----CCCceEEEECCEEEeccCCCC-CCCCCC
Q 004611 672 RYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKP-SFF-----GAKPEMVIKGGAIAWANMGDP-NASIPT 737 (742)
Q Consensus 672 ~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp-~~~-----~~~p~~Vi~~G~iV~~~~g~~-~~~~~~ 737 (742)
++++++|+|||+++|+++ .| |++||.||||+||. +++ ..++..||++|++|+...-+. -..+|+
T Consensus 344 ~~l~~aT~~~A~~lgl~~-~g-i~~G~~ADlvl~d~~~p~e~i~~~~~~~~V~~~G~~v~~~~~~~~~~~~~~ 414 (426)
T PRK07572 344 ACFDAVTVNPARIMGLEG-YG-LEPGCNADLVLLQARDPIEAIRLRAARLAVIRRGKVIARTPPRVARLSLPG 414 (426)
T ss_pred HHHHHhhcchHHhhCCCC-cC-CCCCCcCCEEEEeCCCHHHHHHhcCCceEEEECCEEEeccCCceeeeccCC
Confidence 788899999999999987 67 99999999999994 653 347899999999998764322 334444
No 91
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=99.90 E-value=3.7e-22 Score=222.68 Aligned_cols=298 Identities=19% Similarity=0.200 Sum_probs=168.2
Q ss_pred eeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC--------------------
Q 004611 350 FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC-------------------- 409 (742)
Q Consensus 350 ~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~-------------------- 409 (742)
.+++|.|+||+|++||+..+.. ...+++.++||+.|++|+|||||+|+|+..
T Consensus 5 ~~~~V~V~~g~I~~Vg~~~~~~--------~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~ 76 (401)
T TIGR02967 5 EDGLLVVENGRIVAVGDYAELK--------ETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTF 76 (401)
T ss_pred eceEEEEECCEEEEecCcchhh--------hccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcC
Confidence 3578999999999999853311 012346689999999999999999999621
Q ss_pred --------chHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEee--c--CCCCC----CC--
Q 004611 410 --------PQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGF--T--GKGNS----AK-- 471 (742)
Q Consensus 410 --------P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~--~--~~g~~----~~-- 471 (742)
++........++..++..|++-+- ......+.......++.+..+++..+ . ..... ..
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~----d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~ 152 (401)
T TIGR02967 77 PTEARFADPDHAEEVAEFFLDELLRNGTTTAL----VFATVHPESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAE 152 (401)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhCCCcEEE----eccccCHHHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHH
Confidence 111111122223334444442110 00011222334444555555544221 1 10000 11
Q ss_pred --hHHHHHHHH----hcCc--eeEeccCCCCCHHHHHHHHHHHHHc-CCEEEEEcC-CCccchHHHHHHHHhc-------
Q 004611 472 --PDELHEIIK----AGAM--GLKLHEDWGSTPAAIDNCLTVAEEY-DIQVNIHTD-TLNESGFVEHTIAAFK------- 534 (742)
Q Consensus 472 --~~~l~e~i~----aGa~--glkl~~d~~~t~~~l~~~l~~A~e~-g~~v~iH~d-tlne~g~ve~~l~a~~------- 534 (742)
.+..+++++ .|.. ++..+..+.++++.++++.+.|+++ ++++++|+. +..+ ++...+.+.
T Consensus 153 ~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~---~~~~~~~~~~~~~~~~ 229 (401)
T TIGR02967 153 SSYDESKALIERWHGKGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDE---IAWVKELFPEAKDYLD 229 (401)
T ss_pred HHHHHHHHHHHHHhCcCCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchH---HHHHHHHcCCCCcHHH
Confidence 122333332 1322 4455666788999999999999999 999999984 4333 222222111
Q ss_pred --------CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhh
Q 004611 535 --------GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESR 606 (742)
Q Consensus 535 --------g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~R 606 (742)
+......|.... .++.++.+++.++..+ .+|+..+ +
T Consensus 230 ~l~~~g~lg~~~~~~H~~~~----~~~~~~~l~~~g~~v~-~~P~~~~-------------------------------~ 273 (401)
T TIGR02967 230 VYDHYGLLGRRSVFAHCIHL----SDEECQRLAETGAAIA-HCPTSNL-------------------------------F 273 (401)
T ss_pred HHHHCCCCCCCeEEEecccC----CHHHHHHHHHcCCeEE-EChHHHH-------------------------------H
Confidence 222223343322 3566777776664211 1111000 0
Q ss_pred hhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcC
Q 004611 607 IRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANG 686 (742)
Q Consensus 607 ir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lG 686 (742)
....+++...+.+.|+.+.+|||+.. +... ..+.....+... ..+ ...++++.++|+++|+|||+++|
T Consensus 274 -~~~g~~~~~~~~~~Gv~v~lGtD~~~-~~~~----~~~~~~~~~~~~-~~~-----~~~~~~~~~~l~~aT~~~A~~lg 341 (401)
T TIGR02967 274 -LGSGLFNLKKALEHGVRVGLGTDVGG-GTSF----SMLQTLREAYKV-SQL-----QGARLSPFEAFYLATLGGARALD 341 (401)
T ss_pred -hccCCCCHHHHHHCCCeEEEecCCCC-CCCc----CHHHHHHHHHHH-hhh-----cCCCCCHHHHHHHHHHHHHHHhC
Confidence 01123445667788999999999742 2111 112211111100 000 12468999999999999999999
Q ss_pred CCCCcccccCCCcceEEEECCCCC
Q 004611 687 FSQFVGSVEVGKLADLVLWKPSFF 710 (742)
Q Consensus 687 l~d~vGSIe~GK~ADLVV~Dp~~~ 710 (742)
+++++|+|++||.|||+++|.+..
T Consensus 342 ~~~~~G~i~~G~~ADlvi~d~~~~ 365 (401)
T TIGR02967 342 LDDRIGNFEPGKEADFVVLDPAAT 365 (401)
T ss_pred CcCCccccCCCCccCEEEEcCCCC
Confidence 998899999999999999997643
No 92
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.90 E-value=3.7e-22 Score=225.51 Aligned_cols=344 Identities=17% Similarity=0.146 Sum_probs=198.8
Q ss_pred ccEEEEecEEEc------------CCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecce
Q 004611 334 LDTVITNAVIID------------HTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAI 401 (742)
Q Consensus 334 ~dlVI~Na~Iid------------~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfI 401 (742)
..++|+|+++-+ .++...++|.|+||||++|++...+ ..+.++||++|++|+||||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~------------~~~~~~id~~g~~v~Pg~i 78 (438)
T PRK07583 11 GRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGA------------PDELPAVDLKGRMVWPCFV 78 (438)
T ss_pred CcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCC------------CCCCceecCCCCcccCCcc
Confidence 567888888542 1234567999999999999986321 2367899999999999999
Q ss_pred eeccCCCCc-------------h-----------------HHHHHHHHHHHHHHhCCCCCCCCCcc-ccc--CCChHHHH
Q 004611 402 DCHVHFICP-------------Q-----------------LAHDAIASGITTLVGGGTGPADGTRA-TTC--TPAPSQMK 448 (742)
Q Consensus 402 D~HvH~~~P-------------~-----------------~~~~al~~GvTTl~~gGtgp~~~~~~-~~~--t~~~~~i~ 448 (742)
|.|+|+... . ...+.+..++..++.+|++....... ... ......+.
T Consensus 79 d~H~Hld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~ 158 (438)
T PRK07583 79 DMHTHLDKGHIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFA 158 (438)
T ss_pred cceeccccceecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHH
Confidence 999997211 0 01112556666666677641111000 011 11112232
Q ss_pred HHHHhcCCCCce---Ee---ecCCCCCCChHHHHHHHH-h-cCceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcC-C
Q 004611 449 LMLQSTDDLPLN---FG---FTGKGNSAKPDELHEIIK-A-GAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTD-T 519 (742)
Q Consensus 449 ~~l~a~~~~~vn---~g---~~~~g~~~~~~~l~e~i~-a-Ga~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~d-t 519 (742)
++.+..... +. ++ +++..... .+.+.+.+. . |..|.+.+... ...+.+..+++.|+++|+++.+|++ +
T Consensus 159 ~~~~~~~~~-~~~~~v~~~p~~~~~~~~-~~eL~~~v~~~~gv~g~~~~~~~-~~d~~l~~i~~lA~~~G~~v~vH~~E~ 235 (438)
T PRK07583 159 ELREAWAGR-IALQAVSLVPLDAYLTDA-GERLADLVAEAGGLLGGVTYMNP-DLDAQLDRLFRLARERGLDLDLHVDET 235 (438)
T ss_pred HHHHHhhcc-CeEEEEEecChhhccCch-HHHHHHHHHHcCCEEeCCCCCCC-CHHHHHHHHHHHHHHhCCCcEEeECCC
Confidence 333322221 22 12 22222222 245555553 3 45666655443 2568899999999999999999994 3
Q ss_pred Cccch-HHH----HHHHHhcCCeEEEEecccCCCCC---CHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeec
Q 004611 520 LNESG-FVE----HTIAAFKGRTIHTYHSEGAGGGH---APDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHH 591 (742)
Q Consensus 520 lne~g-~ve----~~l~a~~g~~ih~~H~~gagggh---apdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hh 591 (742)
..+.. .++ .+.+......+++.|........ ..+.++.+++.++..+.+ |+..+... ..
T Consensus 236 ~~~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~~-P~~~~~l~------------~~ 302 (438)
T PRK07583 236 GDPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVSL-PMCNLYLQ------------DR 302 (438)
T ss_pred CCchHHHHHHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEEC-cchhhhhc------------CC
Confidence 22211 122 22222223457777776543111 136788888877643322 22111000 00
Q ss_pred cCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCc--cCccchhhhhhhhhhhhhhhhccccCCCcccCCCCc
Q 004611 592 LHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQA--MGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLR 669 (742)
Q Consensus 592 l~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a--~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~ 669 (742)
.... . -+.........|.+.|+.+++|||+.. +..++. ...++....+.. . ...+.+
T Consensus 303 ~~~~--------~--p~~~~~~~v~~l~~aGV~valGtD~~~d~~~p~g~--~~~~~~~~~a~~-~--------~~~~~~ 361 (438)
T PRK07583 303 QPGR--------T--PRWRGVTLVHELKAAGIPVAVASDNCRDPFYAYGD--HDMLEVFREAVR-I--------LHLDHP 361 (438)
T ss_pred CcCC--------C--CCCCCcchHHHHHHCCCeEEEEeCCCCCCCCCCCC--cCHHHHHHHHHH-H--------HhcCCc
Confidence 0000 0 011233456778888999999999842 111110 011111111100 0 011467
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCC------CCceEEEECCEEEecc
Q 004611 670 IRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFG------AKPEMVIKGGAIAWAN 727 (742)
Q Consensus 670 ~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~------~~p~~Vi~~G~iV~~~ 727 (742)
+.++++++|.|||+++|+++ +|+|++||.|||||||.+++. ..+..||++|++|+..
T Consensus 362 ~~~al~~~T~~~A~~lg~~~-~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~V~~~G~~v~~~ 424 (438)
T PRK07583 362 YDDWPAAVTTTPADIMGLPD-LGRIAVGAPADLVLFKARSFSELLSRPQSDRIVLRAGKPIDTT 424 (438)
T ss_pred HHHHHHHHhHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCHHHHHhcCCCccEEEECCEEeccc
Confidence 89999999999999999987 899999999999999988752 3578999999998764
No 93
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=99.90 E-value=3e-22 Score=226.40 Aligned_cols=330 Identities=14% Similarity=0.172 Sum_probs=186.4
Q ss_pred EEEEecEEEcCC--C--ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC--
Q 004611 336 TVITNAVIIDHT--G--IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC-- 409 (742)
Q Consensus 336 lVI~Na~Iid~~--g--i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~-- 409 (742)
++|+|++|++.+ . +.+++|.|+||+|++||+..... ...++.++||+.|++|+|||||+|+|+..
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~---------~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~ 71 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELK---------QKYPEATFIDAKGKLIMPGFINTHNHFYSTF 71 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhc---------ccCCCCeEEeCCCCEEecCeeecccchhhhh
Confidence 479999999633 2 35589999999999999852210 01245689999999999999999999721
Q ss_pred ---------c--hH-------------------HHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCc
Q 004611 410 ---------P--QL-------------------AHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPL 459 (742)
Q Consensus 410 ---------P--~~-------------------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~v 459 (742)
+ .+ .......+...++..|++-...-... ............++....++
T Consensus 72 ~rg~~~d~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~-~~~~~~~~~~~~~a~~~~Gi 150 (441)
T TIGR03314 72 ARGMMADIPPPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHAS-PNAITGSLSTIRKAADEAGL 150 (441)
T ss_pred hccccccCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccc-cccccchHHHHHHHHHHhCC
Confidence 0 00 11122333444455555211000000 00001123445556666665
Q ss_pred eEee----cCCCC-CCChHHHHH---H---HHhc---C--ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-CCCcc
Q 004611 460 NFGF----TGKGN-SAKPDELHE---I---IKAG---A--MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-DTLNE 522 (742)
Q Consensus 460 n~g~----~~~g~-~~~~~~l~e---~---i~aG---a--~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-dtlne 522 (742)
+..+ ..... ....+.+++ . .+.. . .++.+|..+.++++.+..+.++|+++++++++|+ ++..|
T Consensus 151 R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e 230 (441)
T TIGR03314 151 RTMLCYETSDRDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYD 230 (441)
T ss_pred eEEEeeeeecCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHH
Confidence 5322 22111 111111221 1 1111 1 2567788899999999999999999999999999 44433
Q ss_pred chHHHHHHHHhc-------------CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEe
Q 004611 523 SGFVEHTIAAFK-------------GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVC 589 (742)
Q Consensus 523 ~g~ve~~l~a~~-------------g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~ 589 (742)
++...+.+. +......|+... .++.++..++.++. ++
T Consensus 231 ---~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~----~~~d~~~la~~g~~-----------------------v~ 280 (441)
T TIGR03314 231 ---VEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYL----SDREIELLNETDTF-----------------------VV 280 (441)
T ss_pred ---HHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecC----CHHHHHHHHHcCCc-----------------------EE
Confidence 222211111 112222222221 24455555554432 11
Q ss_pred eccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhh-hccccCCCcccCCCC
Q 004611 590 HHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKS-QRGSFGPSAADNDNL 668 (742)
Q Consensus 590 hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~-~~~~L~~~~~~~~gl 668 (742)
|....+ .+ ....+++...+.+.|+.+.+|||+.+. ..|..+..... ++.. ......
T Consensus 281 ~cP~sn---------~~-l~~G~~p~~~~~~~Gv~v~LGtD~~~~--------d~~~em~~a~~~~~~~-----~~~~~~ 337 (441)
T TIGR03314 281 HNPESN---------MG-NAVGYNPVLRMFKNGILLGLGTDGYTS--------DMFESLKFANFKHKDA-----GGDLNA 337 (441)
T ss_pred ECHHHH---------hh-hccCCCCHHHHHHCCCEEEEcCCCCCc--------CHHHHHHHHHHHhccc-----cCCCCc
Confidence 111000 01 122345556677889999999997432 11211111100 1100 011122
Q ss_pred cHHHHHHHHHHHHHHHcC--CCCCcccccCCCcceEEEECCCCC-----------------CCCceEEEECCEEEeccC
Q 004611 669 RIRRYIAKYTINPAIANG--FSQFVGSVEVGKLADLVLWKPSFF-----------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 669 ~~~~aL~~aTiNpA~~lG--l~d~vGSIe~GK~ADLVV~Dp~~~-----------------~~~p~~Vi~~G~iV~~~~ 728 (742)
.+.++++|+|+|+|+++| +.+++|+|++||.|||+++|++.. ..++..||++|+++|.+.
T Consensus 338 ~~~~~~~~aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~~~~ 416 (441)
T TIGR03314 338 AWPESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTADNINGHILFGMNGGSVDSTMVNGKVVMEDR 416 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechhhccccceecCCCCeeEEEEECCEEEEECC
Confidence 357899999999999997 455689999999999999996531 237899999999999753
No 94
>PRK14085 imidazolonepropionase; Provisional
Probab=99.90 E-value=1.5e-21 Score=216.76 Aligned_cols=299 Identities=15% Similarity=0.160 Sum_probs=178.2
Q ss_pred ccEEEEe-cEEEcCC--------C-ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceee
Q 004611 334 LDTVITN-AVIIDHT--------G-IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDC 403 (742)
Q Consensus 334 ~dlVI~N-a~Iid~~--------g-i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~ 403 (742)
|+++|+| +.|++.+ . +.+++|.|+||+|++|++... ...+.++||++|++|+|||||+
T Consensus 1 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~------------~~~~~~~iD~~g~~v~PGlId~ 68 (382)
T PRK14085 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAAD------------APAADERVDAGGRAVLPGFVDS 68 (382)
T ss_pred CcEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCcc------------CCCCCeEEeCCCCEEecCeEec
Confidence 5789999 4999743 2 345899999999999998522 1246689999999999999999
Q ss_pred ccCCCC---------------------------------chH--------HHHHHHHHHHHHHhCCCCCCCCCcccccCC
Q 004611 404 HVHFIC---------------------------------PQL--------AHDAIASGITTLVGGGTGPADGTRATTCTP 442 (742)
Q Consensus 404 HvH~~~---------------------------------P~~--------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~ 442 (742)
|+|+.. ++. +.+++++|+||+..++. .. ..
T Consensus 69 H~Hl~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~-----~~----~~ 139 (382)
T PRK14085 69 HSHLVFAGDRSAEFAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTG-----YG----LT 139 (382)
T ss_pred CcCccccCChhHHHHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCc-----CC----CC
Confidence 999731 011 34456666666655321 00 00
Q ss_pred ChHHHHHHHHhcCCCCce---Eeec--CCCCCCChHHH--------HHHHHhcCceeEeccCC-CCCHHHHHHHHHHHHH
Q 004611 443 APSQMKLMLQSTDDLPLN---FGFT--GKGNSAKPDEL--------HEIIKAGAMGLKLHEDW-GSTPAAIDNCLTVAEE 508 (742)
Q Consensus 443 ~~~~i~~~l~a~~~~~vn---~g~~--~~g~~~~~~~l--------~e~i~aGa~glkl~~d~-~~t~~~l~~~l~~A~e 508 (742)
....++. .+........ .+.+ +.....+.+.. ...++..+.-+|+|.+- ..+++++.++++.|++
T Consensus 140 ~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idi~~~~~~~~~~~l~~~~~~a~~ 218 (382)
T PRK14085 140 VEDEARS-ARIAAEFTDEVTFLGAHVVPPEYAGDADEYVDLVCGPMLDAVAPHARWIDVFCERGAFDEDQSRRVLTAGRA 218 (382)
T ss_pred HHHHHHH-HHHHHHhhhcceeeccccCCcccCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0111111 1110011001 1111 11111122211 12333334455655432 3578999999999999
Q ss_pred cCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEE
Q 004611 509 YDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMV 588 (742)
Q Consensus 509 ~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v 588 (742)
+|+++.+|+........++..++.......|..+. .++.++.+++.++.++.. |...+
T Consensus 219 ~g~~v~~H~~~~~~~~~v~~~~~~g~~~i~H~~~l-------~~~~~~~la~~gv~~~~~-P~~~~-------------- 276 (382)
T PRK14085 219 AGLGLRVHGNQLGPGPGVRLAVELGAASVDHCTYL-------TDADVDALAGSGTVATLL-PGAEF-------------- 276 (382)
T ss_pred cCCCeEEEeCcccCChHHHHHHHcCCCcHHHhCCC-------CHHHHHHHHHcCCEEEEC-cHHHH--------------
Confidence 99999999853222223555554322233344332 467788887777643332 11000
Q ss_pred eeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCC
Q 004611 589 CHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNL 668 (742)
Q Consensus 589 ~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl 668 (742)
. ....+++...+.+.|+.+++|||+.+...+...+...+ .... ...++
T Consensus 277 --------------~----~~~~~~~~~~l~~aGv~v~lgsD~~~~~~~~~~~~~~~---~~~~-----------~~~~l 324 (382)
T PRK14085 277 --------------S----TRQPYPDARRLLDAGVTVALASDCNPGSSYTSSMPFCV---ALAV-----------RQMGM 324 (382)
T ss_pred --------------h----cCCCCchHHHHHHCCCcEEEEeCCCCCCChHHHHHHHH---HHHH-----------HhcCC
Confidence 0 01123556778888999999999743221111110000 0000 13478
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC
Q 004611 669 RIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF 709 (742)
Q Consensus 669 ~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~ 709 (742)
+++++++++|.|||+++|+++ +|+|++||.||||++|.+.
T Consensus 325 ~~~~al~~aT~~~A~~lg~~~-~G~l~~G~~ADlvv~d~~~ 364 (382)
T PRK14085 325 TPAEAVWAATAGGARALRRDD-VGVLAVGARADLHVLDAPS 364 (382)
T ss_pred CHHHHHHHHHHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCC
Confidence 999999999999999999975 8999999999999999875
No 95
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.90 E-value=2.1e-22 Score=219.46 Aligned_cols=276 Identities=17% Similarity=0.132 Sum_probs=172.1
Q ss_pred ceEEecCCCEEeecceeeccCCCCc--------------------hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChH
Q 004611 386 TEVIAGERFIVTAGAIDCHVHFICP--------------------QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPS 445 (742)
Q Consensus 386 teVIDa~G~iVtPGfID~HvH~~~P--------------------~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~ 445 (742)
+++||+.|++|+|||||+|+|+..+ .....++..|+||+++.|.. ....
T Consensus 1 ~~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~-----------~~~~ 69 (342)
T cd01299 1 AQVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGA-----------DYGL 69 (342)
T ss_pred CcEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCc-----------chHH
Confidence 3689999999999999999997431 13566788888888875531 1112
Q ss_pred HHHHHHHhcCCCCceEeecCC------------------------CCCCC----hHHHHHHHHhcCceeEeccCC-----
Q 004611 446 QMKLMLQSTDDLPLNFGFTGK------------------------GNSAK----PDELHEIIKAGAMGLKLHEDW----- 492 (742)
Q Consensus 446 ~i~~~l~a~~~~~vn~g~~~~------------------------g~~~~----~~~l~e~i~aGa~glkl~~d~----- 492 (742)
++..++.....+.++...+. ....+ .+.++++++.|+..+|++.++
T Consensus 70 -~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~ 148 (342)
T cd01299 70 -LRDAIDAGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSP 148 (342)
T ss_pred -HHHHHHcCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCC
Confidence 34444444332222211110 00111 345667778899999999864
Q ss_pred -------CCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCccc
Q 004611 493 -------GSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLP 565 (742)
Q Consensus 493 -------~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlp 565 (742)
..+++.+..+++.|+++++++.+|+.. ...++..++.......|.+.. .++.++.+++.++..
T Consensus 149 ~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~---~~~i~~~l~~G~~~i~H~~~~-------~~~~~~~l~~~g~~~ 218 (342)
T cd01299 149 GDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYG---AEAIRRAIRAGVDTIEHGFLI-------DDETIELMKEKGIFL 218 (342)
T ss_pred CCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEEeecCCC-------CHHHHHHHHHCCcEE
Confidence 368899999999999999999999953 233566666544444444432 478888888888753
Q ss_pred CCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhh
Q 004611 566 SSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTW 645 (742)
Q Consensus 566 sstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~ 645 (742)
+.| | .....+. . + ... ....++........+.........+++.|+.+++|||++.....+. ..+
T Consensus 219 ~~t-~---~~~~~~~-~-~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD~~~~~~~~~---~~~ 283 (342)
T cd01299 219 VPT-L---ATYEALA-A-E----GAA--PGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDAGFPVPPHG---WNA 283 (342)
T ss_pred eCc-H---HHHHHHH-h-h----ccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCchh---HHH
Confidence 332 1 1000000 0 0 000 0001111000001133455677888999999999999853111111 111
Q ss_pred hhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC
Q 004611 646 QTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF 710 (742)
Q Consensus 646 ~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~ 710 (742)
.....+ ...++++.++|+++|+|||+++|+++++|+|++||.|||||+|.+++
T Consensus 284 ~e~~~~------------~~~~~~~~~al~~~T~~~a~~~g~~~~~G~i~~G~~ADlvvl~~~pl 336 (342)
T cd01299 284 RELELL------------VKAGGTPAEALRAATANAAELLGLSDELGVIEAGKLADLLVVDGDPL 336 (342)
T ss_pred HHHHHH------------HHhCCCHHHHHHHHHHHHHHHhCccCCcceECCCCcCCEEEECCChh
Confidence 111111 13467999999999999999999988899999999999999998875
No 96
>PRK09230 cytosine deaminase; Provisional
Probab=99.90 E-value=3.3e-21 Score=216.94 Aligned_cols=344 Identities=17% Similarity=0.212 Sum_probs=191.1
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC----
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC---- 409 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~---- 409 (742)
.+++|+|++|++...+ .+|.|+||+|++|++.... . ..+.++||+.|++|+|||||+|+|+..
T Consensus 4 ~~~li~~~~~~~~~~~--~~i~i~~g~I~~i~~~~~~----------~-~~~~~~id~~g~~v~PGlid~H~H~~~~~~~ 70 (426)
T PRK09230 4 ALMTIKNARLPGKEGL--WQITIEDGKISAIEPQSEA----------S-LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTA 70 (426)
T ss_pred ceEEEECcEEcCCCee--EEEEEECCEEEEecCCCCC----------C-CCCCceEeCCCCEeccceeEEEEccccceec
Confidence 5789999999985443 5999999999999985221 0 135689999999999999999999731
Q ss_pred ------c--------------------hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCC----CCc
Q 004611 410 ------P--------------------QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDD----LPL 459 (742)
Q Consensus 410 ------P--------------------~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~----~~v 459 (742)
. +........++..++..|++-...-... ..+....++.+++..+. ..+
T Consensus 71 ~~~~~~~~~~l~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~-~~~~~~~~~a~~~~~~~~~~~~~~ 149 (426)
T PRK09230 71 GEPNWNQSGTLFEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDV-SDPTLTALKAMLEVKEEVAPWVDL 149 (426)
T ss_pred CCCccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEecccc-CCcchhHHHHHHHHHHHhhCcceE
Confidence 1 1111122333333444444211100000 01111223333333221 222
Q ss_pred eEe-ecCCCC---CCChHHHHHHHHhcC--ceeEeccCCCC--CHHHHHHHHHHHHHcCCEEEEEcC-CCccchH-HHH-
Q 004611 460 NFG-FTGKGN---SAKPDELHEIIKAGA--MGLKLHEDWGS--TPAAIDNCLTVAEEYDIQVNIHTD-TLNESGF-VEH- 528 (742)
Q Consensus 460 n~g-~~~~g~---~~~~~~l~e~i~aGa--~glkl~~d~~~--t~~~l~~~l~~A~e~g~~v~iH~d-tlne~g~-ve~- 528 (742)
.+. +...+. ....+.+++..+.+. .+...|..+.. +++.+..++++|+++|+++.+|++ +.++... .+.
T Consensus 150 ~i~a~~~~~~~~~~~~~~~l~~a~~~~~~~vg~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~ 229 (426)
T PRK09230 150 QIVAFPQEGILSYPNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETV 229 (426)
T ss_pred EEEeccCccccCCccHHHHHHHHHHcCCCEEeCCCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHH
Confidence 221 122211 112334445554443 24444444433 578999999999999999999994 4333221 111
Q ss_pred --HHHHhc-CCeEEEEecccCCC---CCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHH
Q 004611 529 --TIAAFK-GRTIHTYHSEGAGG---GHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAF 602 (742)
Q Consensus 529 --~l~a~~-g~~ih~~H~~gagg---ghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~ 602 (742)
.+.... +..+...|+....+ .+.++.++..++.++.. .++|+..+.+.. .
T Consensus 230 ~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~v-v~cP~sn~~l~~-----------------------~ 285 (426)
T PRK09230 230 AALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINF-VANPLVNIHLQG-----------------------R 285 (426)
T ss_pred HHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeE-EECcchhhhhcC-----------------------C
Confidence 122221 33455566555421 11356777777776531 222221111100 0
Q ss_pred hhhhhhhhhhhHHHHHHHCCCeEEEecCCCcc--CccchhhhhhhhhhhhhhhhccccCCCcccCCCC-cHHHHHHHHHH
Q 004611 603 AESRIRAETIAAEDILHDMGAISIISSDSQAM--GRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNL-RIRRYIAKYTI 679 (742)
Q Consensus 603 a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~--gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl-~~~~aL~~aTi 679 (742)
.+.-.+...+++...|.+.|+.+++|||+..- ..++ ....|+..... .....+ ... ++.++++|+|+
T Consensus 286 ~~~~p~~~g~~pi~~l~~aGv~V~lGTD~~~d~~~~~~--~~d~~~~~~~~-~~~~~~-------~~~~~~~~~l~maT~ 355 (426)
T PRK09230 286 FDTYPKRRGITRVKEMLEAGINVCFGHDDVFDPWYPLG--TANMLQVLHMG-LHVCQL-------MGYGQINDGLNLITT 355 (426)
T ss_pred CCCCCCCCCCcCHHHHHHCCCeEEEecCCCCCCCcCCC--CCCHHHHHHHH-HHHHhh-------CChhhHHHHHHHHhc
Confidence 00000123355667788889999999997420 0000 01111111100 000000 011 46799999999
Q ss_pred HHHHHcCCCCCcccccCCCcceEEEECCCC-C-----CCCceEEEECCEEEecc
Q 004611 680 NPAIANGFSQFVGSVEVGKLADLVLWKPSF-F-----GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 680 NpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~-~-----~~~p~~Vi~~G~iV~~~ 727 (742)
|||+++|+++ .| |++||.||||+||.+. + ...++.||++|++|++.
T Consensus 356 ~gA~alg~~~-~g-le~G~~ADlv~~~~~~~~~~~~~~~~~~~v~~~G~~v~~~ 407 (426)
T PRK09230 356 HSARTLNLQD-YG-IEVGNPANLIILPAENGFDAVRRQVPVRYSIRHGKVIAET 407 (426)
T ss_pred chhHHhCCCC-cC-CCCCCcCCEEEEeCCCHHHHHhccCCceEEEECCEEEecc
Confidence 9999999987 78 9999999999999643 2 24679999999999976
No 97
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.89 E-value=9.7e-22 Score=216.74 Aligned_cols=306 Identities=23% Similarity=0.260 Sum_probs=174.7
Q ss_pred EEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc-----------------------
Q 004611 354 IGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP----------------------- 410 (742)
Q Consensus 354 I~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P----------------------- 410 (742)
|.|+||||++||+..+.. ...+.+.++||+.|++|+|||||+|+|+...
T Consensus 1 i~i~~g~I~~ig~~~~~~--------~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (371)
T cd01296 1 IAIRDGRIAAVGPAASLP--------APGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAG 72 (371)
T ss_pred CEEECCEEEEEeCchhcc--------cccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcC
Confidence 578999999999864321 0012466899999999999999999998320
Q ss_pred ---------------hHHHHHHHHHHHHHHhCCCCCCCCCcccccC--CChHHHHHHHHhcCCCCceEe--ecC-CCCCC
Q 004611 411 ---------------QLAHDAIASGITTLVGGGTGPADGTRATTCT--PAPSQMKLMLQSTDDLPLNFG--FTG-KGNSA 470 (742)
Q Consensus 411 ---------------~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t--~~~~~i~~~l~a~~~~~vn~g--~~~-~g~~~ 470 (742)
+........++..++..|++-.......... .....++.+.+..+..++.+. +.+ ....+
T Consensus 73 ~~~~~~~~~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~ 152 (371)
T cd01296 73 GGILSTVRATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLGAHAVPP 152 (371)
T ss_pred CChHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCc
Confidence 0011123334455556666322110000000 112223333333332232322 221 11110
Q ss_pred ----ChHH----HHHHH-----HhcCceeEeccCC-CCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCC
Q 004611 471 ----KPDE----LHEII-----KAGAMGLKLHEDW-GSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGR 536 (742)
Q Consensus 471 ----~~~~----l~e~i-----~aGa~glkl~~d~-~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~ 536 (742)
.... .++.+ +.+..+++.+... ..+++.+..+++.|+++|+++.+|+......+.++........+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~~~ 232 (371)
T cd01296 153 EYKGREEYIDLVIEEVLPAVAEENLADFCDVFCEKGAFSLEQSRRILEAAKEAGLPVKIHADELSNIGGAELAAELGALS 232 (371)
T ss_pred ccCChHHHHHHHHHHHHHHHHHhCCCCEEEEeecCCccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCCHHHHHHHcCCCe
Confidence 0111 12222 2446677765433 34688999999999999999999995432223344433321112
Q ss_pred eEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHH
Q 004611 537 TIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAED 616 (742)
Q Consensus 537 ~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~ 616 (742)
..|..+. .++.++.+++.++..+.+ |+..+. ++ ....+..
T Consensus 233 i~H~~~~-------~~~~i~~la~~g~~v~~~-P~~~~~-------------------------------l~-~~~~~~~ 272 (371)
T cd01296 233 ADHLEHT-------SDEGIAALAEAGTVAVLL-PGTAFS-------------------------------LR-ETYPPAR 272 (371)
T ss_pred eHHhcCC-------CHHHHHHHHHcCCeEEEC-hHHHHH-------------------------------hC-CCCCCHH
Confidence 2243332 478888888777642221 211100 00 0123344
Q ss_pred HHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccC
Q 004611 617 ILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEV 696 (742)
Q Consensus 617 ~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~ 696 (742)
.+.+.|+.+++|||+.+.. .. ....+.....+. ...+++++++++++|+|||+++|+++++|+|++
T Consensus 273 ~l~~~Gv~v~lgsD~~p~~-~~--~~~l~~~~~~~~-----------~~~~l~~~~al~~aT~~~A~~lg~~~~~G~i~~ 338 (371)
T cd01296 273 KLIDAGVPVALGTDFNPGS-SP--TSSMPLVMHLAC-----------RLMRMTPEEALTAATINAAAALGLGETVGSLEV 338 (371)
T ss_pred HHHHCCCcEEEecCCCCCC-Ch--HHHHHHHHHHHH-----------HhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCC
Confidence 5677899999999973221 10 000111111110 124789999999999999999999988999999
Q ss_pred CCcceEEEECCCCCC--------CCceEEEECC
Q 004611 697 GKLADLVLWKPSFFG--------AKPEMVIKGG 721 (742)
Q Consensus 697 GK~ADLVV~Dp~~~~--------~~p~~Vi~~G 721 (742)
||.|||||+|.+++. .++..||++|
T Consensus 339 G~~ADlvv~d~~~~~~~~~~~~~~~v~~v~~~G 371 (371)
T cd01296 339 GKQADLVILDAPSYEHLAYRFGVNLVEYVIKNG 371 (371)
T ss_pred CCCcCEEEECCCchHhhhhhcCCCCceEEEeCc
Confidence 999999999988742 2588999987
No 98
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.89 E-value=9.6e-22 Score=220.84 Aligned_cols=304 Identities=15% Similarity=0.131 Sum_probs=168.8
Q ss_pred cCCCce-eeEE-EEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC-------c-----
Q 004611 345 DHTGIF-KADI-GIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC-------P----- 410 (742)
Q Consensus 345 d~~gi~-~adI-~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~-------P----- 410 (742)
+++++. +++| .|+||+|++||+... .++||+.|++|+|||||+|+|+.. .
T Consensus 3 ~~~~~~~~~~i~~v~~g~I~~Vg~~~~----------------~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~ 66 (418)
T cd01313 3 LPEGWERNVRIEVDADGRIAAVNPDTA----------------TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSA 66 (418)
T ss_pred CCCceecCeEEEEeCCCeEEEecCCCC----------------CcccccCCCeeccCccccCccHHHHHhcccccccCCC
Confidence 345544 4899 999999999998421 246999999999999999999621 0
Q ss_pred -h-------------------HHHHHHHHHHHHHHhCCCCCCC-CCc----cc--ccCCChHHHHHHHHhcCCCCceEee
Q 004611 411 -Q-------------------LAHDAIASGITTLVGGGTGPAD-GTR----AT--TCTPAPSQMKLMLQSTDDLPLNFGF 463 (742)
Q Consensus 411 -~-------------------~~~~al~~GvTTl~~gGtgp~~-~~~----~~--~~t~~~~~i~~~l~a~~~~~vn~g~ 463 (742)
. ........++..++..|++-.. ... .. ..-...+..+...++....+++..+
T Consensus 67 ~~~l~~w~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~ 146 (418)
T cd01313 67 ADSFWTWRELMYRFAARLTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITL 146 (418)
T ss_pred CCChhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEe
Confidence 0 0112223344444444542110 000 00 0001123335556666666555321
Q ss_pred ----cCCC----CCC---------ChHHHHHHH--------HhcC--ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 004611 464 ----TGKG----NSA---------KPDELHEII--------KAGA--MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIH 516 (742)
Q Consensus 464 ----~~~g----~~~---------~~~~l~e~i--------~aGa--~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH 516 (742)
.... ..+ ..+.+.+.. +.+. .++.+|..+.++++.++.+.++|++ |+++++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~H 225 (418)
T cd01313 147 LPVLYARAGFGGPAPNPGQRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHIH 225 (418)
T ss_pred eeeEEeccCCCCCCCchhhhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEEE
Confidence 1110 110 111222111 1122 3566777778999999999999999 9999999
Q ss_pred c-CCCccchHHHH--------HHHH--hcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcce
Q 004611 517 T-DTLNESGFVEH--------TIAA--FKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDM 585 (742)
Q Consensus 517 ~-dtlne~g~ve~--------~l~a--~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~ 585 (742)
+ ++..+...+.+ .+.. .-+...-..|+... .++.++..++.++..+.+ |...+
T Consensus 226 ~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l----~~~~~~~la~~g~~v~~~-P~sn~----------- 289 (418)
T cd01313 226 LAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHL----TDNETLLLGRSGAVVGLC-PTTEA----------- 289 (418)
T ss_pred eCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCC----CHHHHHHHHHcCCEEEEC-CCchh-----------
Confidence 9 44333111111 0111 11222334444433 366777777776532221 11000
Q ss_pred EEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhh-ccccCCCccc
Q 004611 586 LMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQ-RGSFGPSAAD 664 (742)
Q Consensus 586 l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~-~~~L~~~~~~ 664 (742)
+ ....+++...|.++|+.+.+|||+.....+-+.+...+. ..++... ...+ ..
T Consensus 290 --------------------~-lg~g~~p~~~l~~~Gv~v~lGtD~~~~~d~~~~~~~~~~-~~~~~~~~~~~~----~~ 343 (418)
T cd01313 290 --------------------N-LGDGIFPAAALLAAGGRIGIGSDSNARIDLLEELRQLEY-SQRLRDRARNVL----AT 343 (418)
T ss_pred --------------------h-ccCCCCCHHHHHHCCCcEEEecCCCCCcCHHHHHHHHHH-HHHHHhcccccc----cc
Confidence 0 012334555677889999999997432211111111111 1111110 0111 12
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC
Q 004611 665 NDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF 709 (742)
Q Consensus 665 ~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~ 709 (742)
...++++++|+++|+|+|+++|++ +|||++||.||||++|.+.
T Consensus 344 ~~~~~~~~~l~~~T~~gA~alg~~--~Gsle~Gk~ADlvvld~~~ 386 (418)
T cd01313 344 AGGSSARALLDAALAGGAQALGLA--TGALEAGARADLLSLDLDH 386 (418)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCC--CCeECCCCccCEEEEcCCC
Confidence 347899999999999999999997 8999999999999999653
No 99
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.89 E-value=9.5e-22 Score=217.81 Aligned_cols=326 Identities=20% Similarity=0.239 Sum_probs=188.4
Q ss_pred EEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCch----
Q 004611 336 TVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQ---- 411 (742)
Q Consensus 336 lVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~---- 411 (742)
++|+|++|++.....+.+|.|+||+|+.|++.... ....++||++|++|+|||||+|+|+..+.
T Consensus 1 ~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~------------~~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~ 68 (374)
T cd00854 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDEL------------EEADEIIDLKGQYLVPGFIDIHIHGGGGADFMD 68 (374)
T ss_pred CEEEeEEEeCCCEEcccEEEEECCEEEEecCCCCc------------ccCCcEEECCCCEecccEEEeeecccCCCCCCC
Confidence 47999999998445668999999999999875321 13458999999999999999999984311
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHH----HHHHHhcCCC--CceEeecCCCC----------------C
Q 004611 412 LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQM----KLMLQSTDDL--PLNFGFTGKGN----------------S 469 (742)
Q Consensus 412 ~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i----~~~l~a~~~~--~vn~g~~~~g~----------------~ 469 (742)
...+.+......++.+|++-. ..+..+.....+ ..+.+..+.. +.-+|++..+. .
T Consensus 69 ~~~e~~~~~~~~~~~~GvTtv---~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~ 145 (374)
T cd00854 69 GTAEALKTIAEALAKHGTTSF---LPTTVTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRA 145 (374)
T ss_pred CCHHHHHHHHHHHHccCccee---eccccCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCC
Confidence 012444444444444444211 011222333332 3333322221 33344332221 1
Q ss_pred CChHHHHHHHHhcCceeEeccCCCCCHHHH--HHHHHHHHHcCCEEE-EEcCCCccchHHHHHHHHhcCCeEEEEecccC
Q 004611 470 AKPDELHEIIKAGAMGLKLHEDWGSTPAAI--DNCLTVAEEYDIQVN-IHTDTLNESGFVEHTIAAFKGRTIHTYHSEGA 546 (742)
Q Consensus 470 ~~~~~l~e~i~aGa~glkl~~d~~~t~~~l--~~~l~~A~e~g~~v~-iH~dtlne~g~ve~~l~a~~g~~ih~~H~~ga 546 (742)
++.+.++++++.+...+|+. ...|+.. .+.++.++++|++++ -|+... ...+.+.+++.-....|.+..+..
T Consensus 146 ~~~~~~~~~~~~~~~~ik~~---tlaPE~~~~~~~i~~~~~~gi~v~~GH~~a~--~~~~~~a~~~G~~~~tH~~n~m~~ 220 (374)
T cd00854 146 PDPEELKKWLEAAGGLIKLV---TLAPELDGALELIRYLVERGIIVSIGHSDAT--YEQAVAAFEAGATHVTHLFNAMSP 220 (374)
T ss_pred cCHHHHHHHHHhcCCCEEEE---EECCCCCChHHHHHHHHHCCeEEEeeCCcCC--HHHHHHHHHcCCCeeeECCCCCCC
Confidence 34567788887777778875 4566666 789999999999996 698521 112445555444456666655444
Q ss_pred CCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCC-CeE
Q 004611 547 GGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMG-AIS 625 (742)
Q Consensus 547 ggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~G-v~~ 625 (742)
...+.+..+..+-... .. ..+++...+|+++. .+.++ .+..| -.+
T Consensus 221 ~~~r~~~~~~a~l~~~----------~~-------~~~li~dg~Hv~~~---~~~~~--------------~r~~g~~~~ 266 (374)
T cd00854 221 LHHREPGVVGAALSDD----------DV-------YAELIADGIHVHPA---AVRLA--------------YRAKGADKI 266 (374)
T ss_pred cCCCCCcHHHHhhcCC----------CC-------eEEEEcCCCcCCHH---HHHHH--------------HHhcCCCcE
Confidence 3333444333332110 00 12223345566543 22111 11124 456
Q ss_pred EEecCCCcc-----Ccc--ch-hhhhhhhhhhhhhhhccccCCCc---------c-cCCCCcHHHHHHHHHHHHHHHcCC
Q 004611 626 IISSDSQAM-----GRI--GE-VISRTWQTAHKMKSQRGSFGPSA---------A-DNDNLRIRRYIAKYTINPAIANGF 687 (742)
Q Consensus 626 ~lgSDs~a~-----gr~--ge-~i~~~~~~~~~m~~~~~~L~~~~---------~-~~~gl~~~~aL~~aTiNpA~~lGl 687 (742)
++.||+... +.+ +. .+.. +. .......+.+.+.. . ...++++.++++++|.|||+++|+
T Consensus 267 ~lvtD~~~~~G~~~g~y~~~~~~~~~-~~--~~~~~~~g~laG~~~~l~~~~~~l~~~~~l~~~~al~~aT~npA~~lg~ 343 (374)
T cd00854 267 VLVTDAMAAAGLPDGEYELGGQTVTV-KD--GVARLADGTLAGSTLTMDQAVRNMVKWGGCPLEEAVRMASLNPAKLLGL 343 (374)
T ss_pred EEEeccccccCCCCCeEEECCEEEEE-EC--CEEEcCCCCeeehHhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHcCC
Confidence 677886321 111 00 0000 00 00000001111000 0 234689999999999999999999
Q ss_pred CCCcccccCCCcceEEEECCCCCCCCceEEEECC
Q 004611 688 SQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGG 721 (742)
Q Consensus 688 ~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G 721 (742)
+++.|+|++|+.|||++||.+ .++..||++|
T Consensus 344 ~~~~G~i~~G~~ADlvv~d~~---~~v~~~~~~G 374 (374)
T cd00854 344 DDRKGSLKPGKDADLVVLDDD---LNVKATWING 374 (374)
T ss_pred CCCcCCcCCCCcCCEEEECCC---CcEEEEEeCc
Confidence 988999999999999999998 6889999887
No 100
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.89 E-value=3.4e-21 Score=222.61 Aligned_cols=324 Identities=16% Similarity=0.207 Sum_probs=204.9
Q ss_pred ccccccccCCCCCCCcccEEEEecEEEcC-CC-ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCE
Q 004611 318 IREGMGQACGHHYAKSLDTVITNAVIIDH-TG-IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFI 395 (742)
Q Consensus 318 ~r~~~~~~~~~~~~~~~dlVI~Na~Iid~-~g-i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~i 395 (742)
+|+.+.++.++.+ +|++|+|++|++. ++ +..++|.|+||+|++|++.... ..+.++||++|++
T Consensus 17 ~~~~i~~a~g~~~---~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~------------~~~~~vIDa~G~~ 81 (588)
T PRK10027 17 YQELLAVSRGDAV---ADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYAD------------APALQRIDARGAT 81 (588)
T ss_pred HHHHHHHhCCCCC---CCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCC------------CCCCeEEECCCCE
Confidence 4677777777665 7899999999984 33 6778999999999999764210 1346899999999
Q ss_pred EeecceeeccCCCCch-----HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCC-
Q 004611 396 VTAGAIDCHVHFICPQ-----LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNS- 469 (742)
Q Consensus 396 VtPGfID~HvH~~~P~-----~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~- 469 (742)
|+|||||+|+|+.++. +...++..|+||++. .|.+ .....+...++.+++.....|+++++....+.
T Consensus 82 v~PGlIDaHvHiess~~~p~~~a~aal~~G~TtVv~---dPhe----i~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~vp 154 (588)
T PRK10027 82 AVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVIC---DPHE----IVNVMGEAGFAWFARCAEQARQNQYLQVSSCVP 154 (588)
T ss_pred EEECeEeccccCCcccCCHhHHHHHHHhCceEEEEc---CCCC----cccCCCHHHHHHHHHHhhhCCCeeEEeecccCc
Confidence 9999999999986432 234455566666554 2333 33346778889999998888888765443321
Q ss_pred -----------CChHHHHHHHH-hcCceeEeccCCC----CCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHh
Q 004611 470 -----------AKPDELHEIIK-AGAMGLKLHEDWG----STPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAF 533 (742)
Q Consensus 470 -----------~~~~~l~e~i~-aGa~glkl~~d~~----~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~ 533 (742)
-+.++++++++ ..+.|+.-.++|. ..++.+..+. .+ .+..+.-|+..+.. ..+.++
T Consensus 155 a~~~~Et~Ga~~~~~~~~~~l~~~~v~glgEvMn~~~V~~~d~~~~~ki~-~~--~~~~idGH~p~l~g-----~~L~ay 226 (588)
T PRK10027 155 ALEGCDVNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLD-AF--RHLTLDGHCPGLGG-----KELNAY 226 (588)
T ss_pred CCcccccCCCcCCHHHHHHHhcCCCceeEEeccCccccccCCHHHHHHHH-Hh--CCCceECCCCCCCh-----HHHHHH
Confidence 13456666664 3567888888873 4566666665 44 88889999865443 223333
Q ss_pred cCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcce-EEEeecc-CCCchHHHHHhhhhhhhhh
Q 004611 534 KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDM-LMVCHHL-HKDIPEDVAFAESRIRAET 611 (742)
Q Consensus 534 ~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~-l~v~hhl-~~~~~edia~a~~Rir~~t 611 (742)
-..-+...|.... ..+.++..+ .+| ++.-+.. +++. +.+
T Consensus 227 ~aaGi~sDHE~~t----~eea~eklr-----------------------~Gm~v~iRegS~~~nl-~~l----------- 267 (588)
T PRK10027 227 IAAGIENCHESYQ----LEEGRRKLQ-----------------------LGMSLMIREGSAARNL-NAL----------- 267 (588)
T ss_pred HHcCCCCCcccCC----HHHHHHHHH-----------------------CCCEEEEeCCccccCH-HHH-----------
Confidence 3233333343221 122222221 233 3333322 2221 111
Q ss_pred hhHHHHHHHC-CCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCC
Q 004611 612 IAAEDILHDM-GAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690 (742)
Q Consensus 612 ~a~~~~L~d~-Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~ 690 (742)
...+.+. --.++++||...+..+- ..-.....++... ...|+++.+|++|+|+|||+++|+++
T Consensus 268 ---~~~~~~~~~~~~~l~TDd~~~~~l~----~~Ghi~~~vr~av--------~~~Gi~~~~Ai~mAT~nPA~~lgl~d- 331 (588)
T PRK10027 268 ---APLINEFNSPQCMLCTDDRNPWEIA----HEGHIDALIRRLI--------EQHNVPLHVAYRVASWSTARHFGLNH- 331 (588)
T ss_pred ---HHHhhccCCCeEEEEcCCCChHHHH----hccCHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHcCCCC-
Confidence 1111111 13578999975432110 0000000110000 12589999999999999999999986
Q ss_pred cccccCCCcceEEEECCCCCCCCceEEEECCEEEecc
Q 004611 691 VGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 691 vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~ 727 (742)
+|+|++|+.|||++||... ..++..||++|++|+.+
T Consensus 332 ~G~IapG~~ADlvvld~l~-~~~v~~v~~~G~~v~~~ 367 (588)
T PRK10027 332 LGLLAPGKQADIVLLSDAR-KVTVQQVLVKGEPIDAQ 367 (588)
T ss_pred CcccCCCCcCCEEEEccCC-CceEEEEEECCEEeecc
Confidence 7999999999999999531 24789999999999975
No 101
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.89 E-value=1.4e-21 Score=221.76 Aligned_cols=200 Identities=18% Similarity=0.169 Sum_probs=121.8
Q ss_pred eeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-CCCccchHHHH--------HHHHh--cCCeEEEEecccCCCCCCHH
Q 004611 485 GLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-DTLNESGFVEH--------TIAAF--KGRTIHTYHSEGAGGGHAPD 553 (742)
Q Consensus 485 glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-dtlne~g~ve~--------~l~a~--~g~~ih~~H~~gaggghapd 553 (742)
++.+|..+.++++.++.+.+ |.++|+++++|+ ++..|.....+ .+... -+......|+... .++
T Consensus 204 ~~~p~~~~~~s~e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l----~~~ 278 (455)
T TIGR02022 204 GLAPHSLRAVTPEQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHL----TDE 278 (455)
T ss_pred EEecCCCCcCCHHHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecC----CHH
Confidence 56778888899999999999 889999999999 45444221111 01111 1222223333322 356
Q ss_pred HHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCc
Q 004611 554 IIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQA 633 (742)
Q Consensus 554 iI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a 633 (742)
.++..++.++..+. |...+. ++ ...+++...|.+.|+.+.+|||+..
T Consensus 279 d~~~la~~g~~v~~---------------------~P~sn~-----------~l-g~g~~pi~~l~~~Gv~v~lGTD~~~ 325 (455)
T TIGR02022 279 ETALLARSGAVAGL---------------------CPTTEA-----------NL-GDGIFPAVDFVAAGGRFGIGSDSHV 325 (455)
T ss_pred HHHHHHHcCCeEEE---------------------Chhhhc-----------cc-cCCCCCHHHHHHCCCeEEEECCCCC
Confidence 66666666643211 111110 11 1234566678888999999999743
Q ss_pred cCccchhhhhhhhhhhhhhhh-ccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC--
Q 004611 634 MGRIGEVISRTWQTAHKMKSQ-RGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF-- 710 (742)
Q Consensus 634 ~gr~ge~i~~~~~~~~~m~~~-~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~-- 710 (742)
+..+.+.+...+. ..++... ...+. .....++.+++++|+|+|+|+++|++ +|||++||.||||+||.+..
T Consensus 326 ~~d~~~~m~~a~~-~~~~~~~~~~~~~---~~~~~~~~~~~l~~aT~~gAralg~~--~GsLe~Gk~ADlvvld~~~~~~ 399 (455)
T TIGR02022 326 VIDVAEELRQLEY-GQRLRDRARNVLA---AGPGPSVGRALYDAALLGGAQALGLA--TGGLRAGARADFLTLDGDHPYL 399 (455)
T ss_pred CCCHHHHHHHHHH-HHHHHhccccccc---CCcccchHHHHHHHHHHHHHHHhCCC--CCccCCCCCcCEEEEeCCCccc
Confidence 2211111211111 1111110 00010 01235778899999999999999994 89999999999999996521
Q ss_pred -----------------CCCceEEEECCEEEeccC
Q 004611 711 -----------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 711 -----------------~~~p~~Vi~~G~iV~~~~ 728 (742)
..++..||++|+++|++.
T Consensus 400 ~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~~~g 434 (455)
T TIGR02022 400 AGALGDSLLDRWLFAGGGAAVRDVWVGGRWVVRDG 434 (455)
T ss_pred CCCCchhHHHHHhhcCCCCCccEEEECCEEEEECC
Confidence 137889999999999863
No 102
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.89 E-value=2.2e-21 Score=220.34 Aligned_cols=329 Identities=18% Similarity=0.142 Sum_probs=185.3
Q ss_pred cEEEEecEEEcCCCceeeEEEEEC-CEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC-----
Q 004611 335 DTVITNAVIIDHTGIFKADIGIKN-GLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI----- 408 (742)
Q Consensus 335 dlVI~Na~Iid~~gi~~adI~Ikd-GrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~----- 408 (742)
.++++++.+.++ -..+++|.|+| |||++||+... .+. ++..|++|+|||||+|+|+.
T Consensus 4 ~~~~~~~~~~~~-~~~~~~v~i~~~grI~~vg~~~~-------------~~~---~~~~g~~vlPGlVn~H~H~~~~~~r 66 (456)
T PRK09229 4 TLFAERALLPDG-WARNVRLTVDADGRIAAVEPGAA-------------PAG---AERLAGPVLPGMPNLHSHAFQRAMA 66 (456)
T ss_pred hHHHHHhhCCCc-cccCcEEEEecCCeEEEecCCCC-------------Ccc---ccccCcEEccCcccccccHhhHhhc
Confidence 345666666333 13557999999 99999998421 112 23589999999999999972
Q ss_pred ---C------c---hH-----------------------HHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHh
Q 004611 409 ---C------P---QL-----------------------AHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQS 453 (742)
Q Consensus 409 ---~------P---~~-----------------------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a 453 (742)
. . .. +.+.+.+|+||+.+... .............+......+++
T Consensus 67 g~~~~~~~~~~~l~~w~~~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~-~~~~~~~~~~~~~~~~~~a~~~a 145 (456)
T PRK09229 67 GLTEVRGPPQDSFWSWRELMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHY-LHHDPDGTPYADPAEMALRIVAA 145 (456)
T ss_pred CcccccCCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeee-eccCCCCCccCChHHHHHHHHHH
Confidence 1 0 00 12334444444433210 00000000011122344666677
Q ss_pred cCCCCceEee----c---CCC-CC---------CChHHHH----HHHH----hcC--ceeEeccCCCCCHHHHHHHHHHH
Q 004611 454 TDDLPLNFGF----T---GKG-NS---------AKPDELH----EIIK----AGA--MGLKLHEDWGSTPAAIDNCLTVA 506 (742)
Q Consensus 454 ~~~~~vn~g~----~---~~g-~~---------~~~~~l~----e~i~----aGa--~glkl~~d~~~t~~~l~~~l~~A 506 (742)
.+..+++..+ . +.+ .. ...+.+. ++.+ .+. .++.+|..+.++++.++.+.+.|
T Consensus 146 ~~e~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~A 225 (456)
T PRK09229 146 ARAAGIGLTLLPVLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHSLRAVTPDQLAAVLALA 225 (456)
T ss_pred HHHcCCEEEeceeeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 6666655321 1 110 01 1112221 2221 121 25667888889999999999999
Q ss_pred HHcCCEEEEEc-CCCccchHHHHHHHHh-------------cCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCC
Q 004611 507 EEYDIQVNIHT-DTLNESGFVEHTIAAF-------------KGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTR 572 (742)
Q Consensus 507 ~e~g~~v~iH~-dtlne~g~ve~~l~a~-------------~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~ 572 (742)
++|+++++|+ ++..+ +....+.+ -+.....-|+... .++.++..++.++..+.+ |..
T Consensus 226 -~~g~~i~~H~~e~~~e---~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l----~~~d~~~la~~g~~v~~~-P~s 296 (456)
T PRK09229 226 -APDGPVHIHIAEQTKE---VDDCLAWSGARPVEWLLDHAPVDARWCLVHATHL----TDAETARLARSGAVAGLC-PTT 296 (456)
T ss_pred -cCCCceEEEeCCCHHH---HHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccC----CHHHHHHHHHcCCeEEEC-chh
Confidence 9999999999 43322 22222111 1122233343332 366677777766532221 110
Q ss_pred CCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh
Q 004611 573 PYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK 652 (742)
Q Consensus 573 p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~ 652 (742)
+ .++ ...+++...|.+.|+.+.+|||+.....+.+.+...+. .+++.
T Consensus 297 --------------------n-----------~~l-g~g~~p~~~l~~~Gv~v~lGtD~~~~~d~~~~~~~~~~-~~~~~ 343 (456)
T PRK09229 297 --------------------E-----------ANL-GDGIFPAVDYLAAGGRFGIGSDSHVSIDLVEELRLLEY-GQRLR 343 (456)
T ss_pred --------------------h-----------hhh-cCCCCCHHHHHHCCCeEEEecCCCCCCCHHHHHHHHHH-HHHHh
Confidence 0 011 12345566777889999999997432211111111111 11111
Q ss_pred hh-ccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC-------------------CC
Q 004611 653 SQ-RGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF-------------------GA 712 (742)
Q Consensus 653 ~~-~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~-------------------~~ 712 (742)
.. ...+. .....+++.++|+++|+|+|+++|+ + +|||++||.||||++|.+.+ ..
T Consensus 344 ~~~~~~~~---~~~~~~~~~~~l~~aT~~gA~alg~-~-~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~ 418 (456)
T PRK09229 344 DRRRNVLA---AAAQPSVGRRLFDAALAGGAQALGR-A-IGGLAVGARADLVVLDLDHPALAGREGDALLDRWVFAGGDA 418 (456)
T ss_pred hcCCcccc---cccccchHHHHHHHHHHHHHHHhCC-C-cCCcCCCCccCEEEEeCCCccccCCChhhHHHHHhhcCCCC
Confidence 10 00110 0124778999999999999999999 3 89999999999999996642 13
Q ss_pred CceEEEECCEEEeccC
Q 004611 713 KPEMVIKGGAIAWANM 728 (742)
Q Consensus 713 ~p~~Vi~~G~iV~~~~ 728 (742)
++..||++|+++|++.
T Consensus 419 ~V~~v~V~G~~v~~~g 434 (456)
T PRK09229 419 AVRDVWVAGRWVVRDG 434 (456)
T ss_pred CeeEEEECCEEEEECC
Confidence 7889999999999864
No 103
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=99.88 E-value=5e-22 Score=217.06 Aligned_cols=284 Identities=22% Similarity=0.290 Sum_probs=196.0
Q ss_pred CEEeecceeeccCCCCchH--HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcC-CCCceEeecCCCCC
Q 004611 394 FIVTAGAIDCHVHFICPQL--AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTD-DLPLNFGFTGKGNS 469 (742)
Q Consensus 394 ~iVtPGfID~HvH~~~P~~--~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~-~~~vn~g~~~~g~~ 469 (742)
++|+||+||+|+|+..|.+ .++.+.+|+...+.||++ ....++..+.......++...+..+ ...++|++++....
T Consensus 1 ~~vlPG~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~ 80 (337)
T cd01302 1 LLVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIGP 80 (337)
T ss_pred CEecCCeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEeccC
Confidence 5799999999999988773 579999999999999985 5566666555666677776666554 44688888766554
Q ss_pred C-ChHHHHHHHHhcCceeEeccCC------CCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEe
Q 004611 470 A-KPDELHEIIKAGAMGLKLHEDW------GSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYH 542 (742)
Q Consensus 470 ~-~~~~l~e~i~aGa~glkl~~d~------~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H 542 (742)
. ..+++.++.++|+.++|++..+ ..+.+.+.+++..+.+.+.++.+|++ -...+....+..+|+.|
T Consensus 81 ~~~~~el~~l~~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~E-------r~~~la~~~g~~l~i~H 153 (337)
T cd01302 81 GDVTDELKKLFDAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAE-------RAAQLAEEAGANVHIAH 153 (337)
T ss_pred ccCHHHHHHHHHcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhcCCeEEEeHH-------HHHHHHHHhCCcEEEEe
Confidence 3 5777888888999999988643 45778899999999999999999997 11224444688999999
Q ss_pred cccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhh--------hhhhhhhhH
Q 004611 543 SEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAES--------RIRAETIAA 614 (742)
Q Consensus 543 ~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~--------Rir~~t~a~ 614 (742)
..... +.+.++.+++.++ ++++++ .+||+..+. +++..... |-.....++
T Consensus 154 iss~~---~le~i~~ak~~g~---------~vt~ev---------~ph~L~l~~-~~~~~~~~~~k~~Pplr~~~~~~~L 211 (337)
T cd01302 154 VSSGE---ALELIKFAKNKGV---------KVTCEV---------CPHHLFLDE-SMLRLNGAWGKVNPPLRSKEDREAL 211 (337)
T ss_pred CCCHH---HHHHHHHHHHCCC---------cEEEEc---------ChhhheeCH-HHhhCCCceEEEeCCCCCHHHHHHH
Confidence 98654 4677777777664 233332 235554331 22211111 222345678
Q ss_pred HHHHHHCCCeEEEecCCCccCccchhh--hhhhhhhhhhh--hhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCC
Q 004611 615 EDILHDMGAISIISSDSQAMGRIGEVI--SRTWQTAHKMK--SQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQF 690 (742)
Q Consensus 615 ~~~L~d~Gv~~~lgSDs~a~gr~ge~i--~~~~~~~~~m~--~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~ 690 (742)
++.+.+ |.+.+++||+.+... .+.. ...|.....+. +...++.+......+++++++++++|.|||+++|+.+
T Consensus 212 ~~~l~~-G~id~i~sDh~p~~~-~~k~~~~~~~~a~~G~~g~e~~l~~~~~~~~~~~i~~~~~~~~~s~~pA~~~gl~~- 288 (337)
T cd01302 212 WEGVKN-GKIDTIASDHAPHSK-EEKESGKDIWKAPPGFPGLETRLPILLTEGVKRGLSLETLVEILSENPARIFGLYP- 288 (337)
T ss_pred HHHHhC-CCCCEEecCCCCCCH-HHhccCCCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC-
Confidence 888877 999999999865321 1110 01222121111 1112222222234579999999999999999999976
Q ss_pred cccccCCCcceEEEECCCC
Q 004611 691 VGSVEVGKLADLVLWKPSF 709 (742)
Q Consensus 691 vGSIe~GK~ADLVV~Dp~~ 709 (742)
.|+|++|+.|||+|||++.
T Consensus 289 ~g~i~~G~~ADlvi~d~~~ 307 (337)
T cd01302 289 KGTIAVGYDADLVIVDPKK 307 (337)
T ss_pred CCccccCCcCCEEEEeCCC
Confidence 6999999999999999874
No 104
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.88 E-value=1.2e-20 Score=212.19 Aligned_cols=329 Identities=21% Similarity=0.281 Sum_probs=193.4
Q ss_pred cEEEEecEEEcC--CC-ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC---
Q 004611 335 DTVITNAVIIDH--TG-IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI--- 408 (742)
Q Consensus 335 dlVI~Na~Iid~--~g-i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~--- 408 (742)
.++|+|..++.. +. +..+++.|+||+|+.||+..+. .++.++||+.|++|+|||||+|+|+.
T Consensus 3 ~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~------------~~~~~~iD~~~~lv~Pgfvn~H~H~~~t~ 70 (421)
T COG0402 3 MLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEG------------PPDEEVIDAKGKLVLPGFVNAHTHLDQTL 70 (421)
T ss_pred ceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCC------------CCCceeecCCCCEeccCccccccchHHHH
Confidence 467888888864 33 4568999999999999997442 15789999999999999999999961
Q ss_pred --------------------------CchHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceE-
Q 004611 409 --------------------------CPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNF- 461 (742)
Q Consensus 409 --------------------------~P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~- 461 (742)
+++........++..++..|++- ....+...........++....+++.
T Consensus 71 ~~g~~~~~~l~~wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~----~~~~~~~~~~~~~~~~~a~~~~g~r~~ 146 (421)
T COG0402 71 LRGLADDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTT----ARTHVDVVAESADAAFEAALEVGLRAV 146 (421)
T ss_pred HhhhhcccchHHHHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccc----cccccchhhhhHHHHHHHHHHhCCeeE
Confidence 12223444444555555555531 01111222333333344443333322
Q ss_pred ---eecC-----CCCCCCh------HHHHHHHHhc--CceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-CCCccch
Q 004611 462 ---GFTG-----KGNSAKP------DELHEIIKAG--AMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-DTLNESG 524 (742)
Q Consensus 462 ---g~~~-----~g~~~~~------~~l~e~i~aG--a~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-dtlne~g 524 (742)
.+.. ....... +.++++.+.+ ..++.+|..+.++++.++.+.++++++|+++++|+ |+..|..
T Consensus 147 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~ 226 (421)
T COG0402 147 LGPVLQDVAFPDPGAETDEELEETEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVE 226 (421)
T ss_pred eeeccccCCCCcccccchHHHHHHHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHH
Confidence 2222 1111111 2233333344 34788888899999999999999999999999999 5554432
Q ss_pred HHHH-H----HH--HhcC------CeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeec
Q 004611 525 FVEH-T----IA--AFKG------RTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHH 591 (742)
Q Consensus 525 ~ve~-~----l~--a~~g------~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hh 591 (742)
+..+ . .. ...| ...|..|.. ...+...++.++. +..|..
T Consensus 227 ~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~-------~~e~~~l~~~g~~---------------------v~~cP~ 278 (421)
T COG0402 227 RVLEPYGARPVERLDLLGLLGSHTLLAHCVHLS-------EEELELLAESGAS---------------------VVHCPR 278 (421)
T ss_pred HHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCC-------HHHHHHHhhCCCe---------------------EEECcc
Confidence 2222 0 00 0111 123444432 3444444444432 111211
Q ss_pred cCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh-hhccccCCCcccCCCCcH
Q 004611 592 LHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK-SQRGSFGPSAADNDNLRI 670 (742)
Q Consensus 592 l~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~-~~~~~L~~~~~~~~gl~~ 670 (742)
.+. ++... +.+...+.+.|+++.+|||+.+... +...|+...... .+....... ......
T Consensus 279 sN~-----------~L~sG-~~p~~~~~~~gv~v~~gTD~~~~~~----~~d~l~~~~~a~~l~~~~~~~~---~~~~~~ 339 (421)
T COG0402 279 SNL-----------KLGSG-IAPVRRLLERGVNVALGTDGAASNN----VLDMLREMRTADLLQKLAGGLL---AAQLPG 339 (421)
T ss_pred hhc-----------cccCC-CCCHHHHHHcCCCEEEecCCccccC----hHHHHHHHHHHHHHHHhhcCCC---cccchH
Confidence 111 11111 3334455566999999999865442 234444332111 111111110 111112
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC----------------CCCceEEEECCEEEeccC
Q 004611 671 RRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF----------------GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 671 ~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~----------------~~~p~~Vi~~G~iV~~~~ 728 (742)
+++.++|.|+|++||+ +++|+|++||.||||++|.+.. +..+..||++|+.++...
T Consensus 340 -~~l~~aT~~gA~alg~-~~~G~le~G~~ADlvvld~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~g~~v~~~~ 411 (421)
T COG0402 340 -EALDMATLGGAKALGL-DDIGSLEVGKKADLVVLDASAPHLAPLRPVSRLVFAAGGKDVDRVLVDGRLVMEDG 411 (421)
T ss_pred -HHHHHHHhhHHHHcCC-cccCCcccccccCEEEEcCCCCccccccHHHHHHHhcCCCceeEEEECCEEEEEcc
Confidence 3999999999999999 5699999999999999997752 127889999999988754
No 105
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.87 E-value=1.8e-20 Score=206.78 Aligned_cols=313 Identities=21% Similarity=0.241 Sum_probs=172.5
Q ss_pred ccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCC-CEEeecceeeccCCCCch-
Q 004611 334 LDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGER-FIVTAGAIDCHVHFICPQ- 411 (742)
Q Consensus 334 ~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G-~iVtPGfID~HvH~~~P~- 411 (742)
+|++|+|++|+|+. ..+|+|+||||++|++... .++.++||++| ++|+|||||+|+|+..+.
T Consensus 1 ~~~~i~n~~i~~~~---~~~v~i~~g~I~~v~~~~~-------------~~~~~~iD~~g~~~l~PG~ID~H~H~~~~~~ 64 (365)
T TIGR03583 1 YDLLIKNGRTVNGT---PVDIAIEDGKIAAVGTTIT-------------GSAKQTIDLEGETYVSAGWIDDHTHCFPKSA 64 (365)
T ss_pred CcEEEECcEEecCC---eeEEEEECCEEEEecCCCC-------------CCCCeEEECCCCeEEecCEEEeeeccCCCcc
Confidence 47999999999852 4599999999999976311 13458999999 999999999999986332
Q ss_pred -----HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcC-CCC--ceE---eecCCCC-----CCChHHH
Q 004611 412 -----LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTD-DLP--LNF---GFTGKGN-----SAKPDEL 475 (742)
Q Consensus 412 -----~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~-~~~--vn~---g~~~~g~-----~~~~~~l 475 (742)
....++..|+|+++..++. .......+....+... +.. +++ |++.... ..+.+.+
T Consensus 65 ~~~~~~~~~a~~~GvTt~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~~~~l 135 (365)
T TIGR03583 65 LYYDEPDEIGVKTGVTTVVDAGST---------GADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLSNLDASAV 135 (365)
T ss_pred cccCCHhHhhhcCceeEEEeCCCC---------CCCCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhChHHhHHHHH
Confidence 1245677788887764331 1233333333333322 111 111 2211111 1112333
Q ss_pred HHHHHh---cCceeEeccCC------CCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHh--cCCeEEEEecc
Q 004611 476 HEIIKA---GAMGLKLHEDW------GSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAF--KGRTIHTYHSE 544 (742)
Q Consensus 476 ~e~i~a---Ga~glkl~~d~------~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~--~g~~ih~~H~~ 544 (742)
+++++. +..|+|..... +.++..+...+..+ +.+.++.+|+....+. .++.++.+ .....|.|...
T Consensus 136 ~~~~~~~~~~vv~~~~~~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~--~~~i~~~~~~g~~~~H~fng~ 212 (365)
T TIGR03583 136 KQAVERYPDFIVGLKARMSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPPE--LDEILALMEKGDVLTHCFNGK 212 (365)
T ss_pred HHHHHhCcCcEEEEEEeecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCccC--HHHHHHHhcCCCeeeeeecCC
Confidence 434432 35566655432 33355555544444 6899999999644332 34444443 22355666544
Q ss_pred cCCCCCCHHH----HHHhhhcCcccCCCCCCCCCcchhhhhhcceEEE-eeccCCCchHHHHHhhhhhhhhhhhHHHHHH
Q 004611 545 GAGGGHAPDI----IKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMV-CHHLHKDIPEDVAFAESRIRAETIAAEDILH 619 (742)
Q Consensus 545 gaggghapdi----I~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v-~hhl~~~~~edia~a~~Rir~~t~a~~~~L~ 619 (742)
.....+.+.. +..+.. .+++.. .|+..+...+.. ..+.
T Consensus 213 ~~~~~r~~g~~~~~~~~~l~----------------------~G~i~d~~hg~~~~~~~~~---------------~~~~ 255 (365)
T TIGR03583 213 PNGILRETGEVKPSVLEAYN----------------------RGVILDVGHGTASFSFHVA---------------EKAK 255 (365)
T ss_pred CCCCCCCcchHHHHHHHHHh----------------------CeEEEEeCCCCCCchHHHH---------------HHHH
Confidence 3222222222 222211 233333 444443211111 0111
Q ss_pred HCCC-eEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCC
Q 004611 620 DMGA-ISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGK 698 (742)
Q Consensus 620 d~Gv-~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK 698 (742)
..++ ..+.++|....++..............+. ..|++++++++++|.|||+++|+++ .|+|++|+
T Consensus 256 ~~~~~~~td~~d~~~~~~~~gp~~~l~~~~~~~~------------~~g~~~~ea~~~~t~npa~~~gl~~-~g~i~~g~ 322 (365)
T TIGR03583 256 RAGIFPDTISTDIYIRNRINGPVYSLATVMSKFL------------ALGYSLEEVIEKVTKNAAEILKLTQ-KGRLQEGY 322 (365)
T ss_pred hCCCCCcccccccccCCCccCccccHHHHHHHHH------------HcCCCHHHHHHHHHHHHHHHhCCCC-CCCcCCCC
Confidence 1232 23344443211211111111111122221 2389999999999999999999976 79999999
Q ss_pred cceEEEECCCC--------C--------CCCceEEEECCEEE
Q 004611 699 LADLVLWKPSF--------F--------GAKPEMVIKGGAIA 724 (742)
Q Consensus 699 ~ADLVV~Dp~~--------~--------~~~p~~Vi~~G~iV 724 (742)
.|||++||.+. + ...|..|+++|++.
T Consensus 323 ~ad~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 364 (365)
T TIGR03583 323 DADLTIFTVKAEPKKLTDSEGDSRIAEEQIKPLAVIIGGEYY 364 (365)
T ss_pred cccEEEEecCCCCceeecCCCCEEEeccccceEEEEECCEEe
Confidence 99999999632 1 13678999999864
No 106
>PRK06846 putative deaminase; Validated
Probab=99.87 E-value=1.5e-20 Score=210.63 Aligned_cols=332 Identities=16% Similarity=0.120 Sum_probs=185.8
Q ss_pred EEEEecEEEcC----------CCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeecc
Q 004611 336 TVITNAVIIDH----------TGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHV 405 (742)
Q Consensus 336 lVI~Na~Iid~----------~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~Hv 405 (742)
..|+|++++.. ......+|.|+||+|++|++.... ...+.++||++|++|+|||||+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~-----------~~~~~~~id~~g~~v~Pg~iD~H~ 74 (410)
T PRK06846 6 YWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNKQV-----------PDATLPTYDANGLLMLPAFREMHI 74 (410)
T ss_pred eEEEeeecCccccccCceecCCceeeEEEEEECCEEEEeecCCCC-----------CCCCCceEeCCCCEEecCEEeeee
Confidence 45677665431 123457999999999999975211 013468999999999999999999
Q ss_pred CCCCchH---H---------HHH------------------HHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcC
Q 004611 406 HFICPQL---A---------HDA------------------IASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTD 455 (742)
Q Consensus 406 H~~~P~~---~---------~~a------------------l~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~ 455 (742)
|+..+.. . ... ....+..+...|++..-..............+.+++..+
T Consensus 75 H~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~ 154 (410)
T PRK06846 75 HLDKTYYGGPWKACRPAKTIQDRIELEQKELPELLPTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALE 154 (410)
T ss_pred cccchhhccchhhcCCcccHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHH
Confidence 9853210 0 000 012233333445431000000000011111222222111
Q ss_pred C--CCc--eE-eecCCC--CCCChHHHHHHHHhcCceeE---eccCCCCCHHHHHHHHHHHHHcCCEEEEEcCC-Cccch
Q 004611 456 D--LPL--NF-GFTGKG--NSAKPDELHEIIKAGAMGLK---LHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDT-LNESG 524 (742)
Q Consensus 456 ~--~~v--n~-g~~~~g--~~~~~~~l~e~i~aGa~glk---l~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dt-lne~g 524 (742)
+ ..+ .+ .+...+ .....+.+++..+.|+..++ .+....++++.+..++++|+++|+++.+|++. .++..
T Consensus 155 e~~~~v~~~~~a~~~~g~~~~~~~~lL~~al~~Ga~~i~gl~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~ 234 (410)
T PRK06846 155 RYKDGFTYEIVAFPQHGLLRSNSEPLMREAMKMGAHLVGGVDPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGV 234 (410)
T ss_pred HhhCcceEEEEeccCcccCCccHHHHHHHHHHcCCCEEeCCCCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhH
Confidence 1 112 21 222222 12334567888888876444 34444677889999999999999999999953 32221
Q ss_pred H-HHH----HHHHhcCCeEEEEecccCCCCCCHH---HHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCc
Q 004611 525 F-VEH----TIAAFKGRTIHTYHSEGAGGGHAPD---IIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDI 596 (742)
Q Consensus 525 ~-ve~----~l~a~~g~~ih~~H~~gaggghapd---iI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~ 596 (742)
. +++ +.+..-....+..|+.....-...+ +++..++.++.. .|.+.
T Consensus 235 ~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v-----------------------~~~~~--- 288 (410)
T PRK06846 235 ATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGISI-----------------------TSTVP--- 288 (410)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeE-----------------------EEeCC---
Confidence 1 122 2222212257777876432101112 233455555321 11111
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCc----cCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHH
Q 004611 597 PEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQA----MGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRR 672 (742)
Q Consensus 597 ~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a----~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~ 672 (742)
....+++...|.+.|+.+++|||+.. +...++.+.......... .+ .....+.+
T Consensus 289 -----------~~~g~~p~~~l~~~Gv~v~lGtD~~~~~~~p~~~~d~~~~~~~~~~~~-----~~------~~~~~~~~ 346 (410)
T PRK06846 289 -----------IGRLHMPIPLLHDKGVKVSLGTDSVIDHWSPFGTGDMLEKANLLAELY-----RW------SDERSLSR 346 (410)
T ss_pred -----------CCCCCCCHHHHHhCCCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHHh-----cC------CCHHHHHH
Confidence 11223556778888999999999752 221122222221111111 01 11235678
Q ss_pred HHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCC------CCCceEEEECCEEEecc
Q 004611 673 YIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFF------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 673 aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~------~~~p~~Vi~~G~iV~~~ 727 (742)
+++++|.++ ..+++++.+|+|++||.|||||||.+.. ..++..||++|++||..
T Consensus 347 ~l~~~T~~a-~~l~~~~~~G~l~~G~~ADlvlld~~~~~~~~~~~~~v~~v~~~G~~v~~~ 406 (410)
T PRK06846 347 SLALATGGV-LPLNDEGERVWPKVGDEASFVLVDASCSAEAVARQSPRTAVFHKGQLVAGS 406 (410)
T ss_pred HHHHHcCCc-cccccCCCccCCCCCCcccEEEEeCCChHHHHHhcCCceEEEECCEEEeee
Confidence 999999985 5688877889999999999999997652 24799999999999975
No 107
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.87 E-value=5.3e-20 Score=204.36 Aligned_cols=333 Identities=18% Similarity=0.134 Sum_probs=180.5
Q ss_pred EEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc----h
Q 004611 336 TVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP----Q 411 (742)
Q Consensus 336 lVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P----~ 411 (742)
++|+|++|++.+...+++|.|+||+|++|++.... ....+.++||++|++|+|||||+|+|+... .
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~v~~~~~~----------~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~ 71 (387)
T cd01308 2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNL----------PGYENVTVVDLHGKILVPGFIDQHVHIIGGGGEGG 71 (387)
T ss_pred EEEECcEEeCCCCccceEEEEECCEEEEEeCCccc----------ccCCCCeEEECCCCEEccCeeehhhCcccccCCCc
Confidence 57999999997667778999999999999975321 112467899999999999999999997431 1
Q ss_pred H--------HHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEee----cCCCCCCChH----HH
Q 004611 412 L--------AHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGF----TGKGNSAKPD----EL 475 (742)
Q Consensus 412 ~--------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~----~~~g~~~~~~----~l 475 (742)
. ..+++..|+||+++.. ...........+....++....+++... .........+ .+
T Consensus 72 ~~~~~~~~~~~~~~~~G~tt~~d~~-------~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~ 144 (387)
T cd01308 72 PSTRTPEVTLSDLTTAGVTTVVGCL-------GTDGISRSMEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDL 144 (387)
T ss_pred ccccCHHHHHHHHHhCCceEEecCc-------CCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHH
Confidence 0 1344555666655432 1111222344455555554444443221 1111111111 11
Q ss_pred HHHHH-h--cCceeEeccCCCCCHHHHHHHHHHHHHcCC------EEEEEcCCCccchHHHHHHHH--hcCCeE-EEEec
Q 004611 476 HEIIK-A--GAMGLKLHEDWGSTPAAIDNCLTVAEEYDI------QVNIHTDTLNESGFVEHTIAA--FKGRTI-HTYHS 543 (742)
Q Consensus 476 ~e~i~-a--Ga~glkl~~d~~~t~~~l~~~l~~A~e~g~------~v~iH~dtlne~g~ve~~l~a--~~g~~i-h~~H~ 543 (742)
.+..+ . |..+.+.+.........+.++++.++..+. .+++|+... ...++..... ..|..+ |++|.
T Consensus 145 ~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~--~~~~~~i~~~~~~~G~~~~~~~~~ 222 (387)
T cd01308 145 LLIDKVIGVGEIAISDHRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDG--KRALSPIFELIEETEIPITQFLPT 222 (387)
T ss_pred HHHHHhcCcceEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc--hHHHHHHHHHHHhcCCCcceeECC
Confidence 11111 1 222333333334566777888888876443 466666321 1224444332 224434 77776
Q ss_pred ccCCCCCC-HHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCC
Q 004611 544 EGAGGGHA-PDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMG 622 (742)
Q Consensus 544 ~gagggha-pdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~G 622 (742)
....+... .+.++.++..+.+ ...... ..+++... .. ........+.+.|
T Consensus 223 ~~~~~~~~~~~~~~~~~~G~~v-~i~~~~----------------~~~~~~~~----------~~--~~~~~l~~~~~~g 273 (387)
T cd01308 223 HINRTAPLFEQGVEFAKMGGTI-DLTSSI----------------DPQFRKEG----------EV--RPSEALKRLLEQG 273 (387)
T ss_pred cccCCHHHHHHHHHHHHcCCcE-EEECCC----------------CccccccC----------cc--ChHHHHHHHHHhC
Confidence 65432111 1133444332211 000000 11122100 00 0112222333446
Q ss_pred C---eEEEecCCCc----cCccchhh----hhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCc
Q 004611 623 A---ISIISSDSQA----MGRIGEVI----SRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFV 691 (742)
Q Consensus 623 v---~~~lgSDs~a----~gr~ge~i----~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~v 691 (742)
. .++++||+.. +...+... .........+.. + ....+++++++++++|.|||+++|+++ +
T Consensus 274 ~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~~~~~~~~~----~----v~~~~i~~~~al~~~T~npA~~lg~~~-~ 344 (387)
T cd01308 274 VPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVRE----A----VKCGDIPLEVALRVITSNVARILKLRK-K 344 (387)
T ss_pred CCCCcEEEEECCCCCcccCccCCeEEecCcCcHHHHHHHHHH----H----HHhCCCCHHHHHHHHHHHHHHHhCCCC-C
Confidence 5 3699999631 00001000 000000011110 0 023469999999999999999999976 8
Q ss_pred ccccCCCcceEEEECCCCCCCCceEEEECCEEEeccC
Q 004611 692 GSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 692 GSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~ 728 (742)
|+|++|+.|||++||++ .++..|+++|++++.+.
T Consensus 345 G~i~~G~~ADlvv~d~~---~~~~~~~~~G~~v~~~~ 378 (387)
T cd01308 345 GEIQPGFDADLVILDKD---LDINSVIAKGQIMVRNG 378 (387)
T ss_pred CCcCCCCcCCEEEEcCC---CCEEEEEECCEEEEECC
Confidence 99999999999999998 67899999999998753
No 108
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.87 E-value=2.7e-20 Score=206.72 Aligned_cols=296 Identities=16% Similarity=0.161 Sum_probs=166.4
Q ss_pred CEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC---------------------------Cch
Q 004611 359 GLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI---------------------------CPQ 411 (742)
Q Consensus 359 GrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~---------------------------~P~ 411 (742)
|+|++||+..+.. ...+..+++|+.|++|+|||||+|+|+. +++
T Consensus 1 ~~I~aVG~~~~~~---------~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e 71 (381)
T cd01312 1 DKILEVGDYEKLE---------KRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQ 71 (381)
T ss_pred CeEEEECChHHHH---------hhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChH
Confidence 6899999853210 1124578999999999999999999971 111
Q ss_pred HHHHHHHHHHHHHHhCCCCC-CCCCcccccCCChHHHHHHHHhcCCCCceEee----cCCCCCC---ChHHHHHHHH---
Q 004611 412 LAHDAIASGITTLVGGGTGP-ADGTRATTCTPAPSQMKLMLQSTDDLPLNFGF----TGKGNSA---KPDELHEIIK--- 480 (742)
Q Consensus 412 ~~~~al~~GvTTl~~gGtgp-~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~----~~~g~~~---~~~~l~e~i~--- 480 (742)
..+.+...++..++..|++- .+.. .... ..++....+++..+ .+..... ..+.+.+..+
T Consensus 72 ~~~~~a~~~~~E~l~~G~Tt~~d~~------~~~~----~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (381)
T cd01312 72 PWEEAIRQGIRQMLESGTTSIGAIS------SDGS----LLPALASSGLRGVFFNEVIGSNPSAIDFKGETFLERFKRSK 141 (381)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEec------CCHH----HHHHHHHcCCcEEEEEeeECCCCchhhhhHHHHHHHHHHhh
Confidence 22344456666667777631 1111 1111 33444455554322 1211111 1111111111
Q ss_pred ---hcC--ceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-CCCccchHHHHH-------------------------
Q 004611 481 ---AGA--MGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-DTLNESGFVEHT------------------------- 529 (742)
Q Consensus 481 ---aGa--~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-dtlne~g~ve~~------------------------- 529 (742)
.+. .++.+|..+.++++.+..+.++|+++++++++|+ ++..|..++.+.
T Consensus 142 ~~~~~~v~~~~~p~a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~ 221 (381)
T cd01312 142 SFESQLFIPAISPHAPYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAID 221 (381)
T ss_pred ccCccceEEEECCCCCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHH
Confidence 111 2566788889999999999999999999999999 454443222110
Q ss_pred -HHHhc--CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhh
Q 004611 530 -IAAFK--GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESR 606 (742)
Q Consensus 530 -l~a~~--g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~R 606 (742)
++... +...-..|.... .++.++..++.++.. +|....+ .+
T Consensus 222 ~l~~~g~L~~~~~~~H~~~l----~~~~~~~l~~~g~~v-----------------------~~~P~sn---------~~ 265 (381)
T cd01312 222 FLDMLGGLGTRVSFVHCVYA----NLEEAEILASRGASI-----------------------ALCPRSN---------RL 265 (381)
T ss_pred HHHHcCCCCCCcEEEECCcC----CHHHHHHHHHcCCeE-----------------------EECcchh---------hh
Confidence 01000 112222333222 234444444444321 1111000 00
Q ss_pred hhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcC
Q 004611 607 IRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANG 686 (742)
Q Consensus 607 ir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lG 686 (742)
.....++...+.+.|+.+.+|||+.......+.+...+. +... ... ....+++.++|+|+|+|+|+++|
T Consensus 266 -lg~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~----~~~~-~~~-----~~~~~~~~~~l~~aT~~gA~alg 334 (381)
T cd01312 266 -LNGGKLDVSELKKAGIPVSLGTDGLSSNISLSLLDELRA----LLDL-HPE-----EDLLELASELLLMATLGGARALG 334 (381)
T ss_pred -hcCCCcCHHHHHHCCCcEEEeCCCCccCCCCCHHHHHHH----HHHh-ccc-----ccccCCHHHHHHHHHHHHHHHhC
Confidence 112235566777889999999997653321122211111 1110 000 01136789999999999999999
Q ss_pred CCCCcccccCCCcceEEEECCCCC-------------CCCceEEEECCE
Q 004611 687 FSQFVGSVEVGKLADLVLWKPSFF-------------GAKPEMVIKGGA 722 (742)
Q Consensus 687 l~d~vGSIe~GK~ADLVV~Dp~~~-------------~~~p~~Vi~~G~ 722 (742)
++ +|+|++||.||||++|.+.. ..+|..||++|+
T Consensus 335 ~~--~Gsle~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~~~v~~v~v~G~ 381 (381)
T cd01312 335 LN--NGEIEAGKRADFAVFELPGPGIKEQAPLQFILHAKEVRHLFISGK 381 (381)
T ss_pred CC--CCccCCCCcccEEEEeCCCcCCCCccHHHHHHccCCCCEEEecCC
Confidence 96 89999999999999996542 236788888885
No 109
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.87 E-value=7.1e-21 Score=209.76 Aligned_cols=301 Identities=26% Similarity=0.283 Sum_probs=172.1
Q ss_pred CCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC--------------------Cc-------
Q 004611 358 NGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI--------------------CP------- 410 (742)
Q Consensus 358 dGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~--------------------~P------- 410 (742)
||||++|++... .+.++++||++|++|+|||||+|+|+. .|
T Consensus 1 ~gkI~~i~~~~~------------~~~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~ 68 (359)
T cd01309 1 DGKIVAVGAEIT------------TPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDG 68 (359)
T ss_pred CCEEEEEcCCCC------------CCCCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecc
Confidence 799999998532 235779999999999999999999982 11
Q ss_pred -----hHHHHHHHHHHHHHHh-CCC-CCCCCCcccccCCChHHHHHHHHhcCCCCceEeecCCCCC------C-C----h
Q 004611 411 -----QLAHDAIASGITTLVG-GGT-GPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNS------A-K----P 472 (742)
Q Consensus 411 -----~~~~~al~~GvTTl~~-gGt-gp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~------~-~----~ 472 (742)
.....+++.|+|++.- .|. +...+..+...+.+....+.+++......+.++-.++... + + .
T Consensus 69 ~~~~~~~~~~a~~~GvT~~~v~p~~~~~~gg~~~~i~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~~~~~~p~trmg~~ 148 (359)
T cd01309 69 INPDDEAFKRARAGGVTTVQVLPGSANLIGGQGVVIKTDGGTIEDMFIKAPAGLKMALGENPKRVYGGKGKEPATRMGVA 148 (359)
T ss_pred cCCCCHhHHHHHhcCceEEEecCCCCCcccceEEEEECCCCCHHHhcccCCceeEEecCCCCcccccccCCCccchHHHH
Confidence 1267889999999853 111 2233333222233322223333333333344443333211 1 1 1
Q ss_pred HHHHHHHHh-cCce---e----EeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhc--CCeEEEEe
Q 004611 473 DELHEIIKA-GAMG---L----KLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFK--GRTIHTYH 542 (742)
Q Consensus 473 ~~l~e~i~a-Ga~g---l----kl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~--g~~ih~~H 542 (742)
..+++.+.. -... . +..... .....+...+.+++.. +++.+|++... -++..++... +..+.+.|
T Consensus 149 ~~lr~~~~~a~~y~~~~~~~~~~~~~~~-~~d~~l~~l~~~~~~~-~~v~vHa~~~~---~i~~~l~~~~e~g~~~~i~H 223 (359)
T cd01309 149 ALLRDAFIKAQEYGRKYDLGKNAKKDPP-ERDLKLEALLPVLKGE-IPVRIHAHRAD---DILTAIRIAKEFGIKITIEH 223 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCC-CCCccHHHHHHHHcCC-eeEEEEeCCHH---HHHHHHHHHHHcCCCEEEEC
Confidence 122222210 0000 0 000001 1222344555555533 89999996422 2554444321 33345556
Q ss_pred cccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCC
Q 004611 543 SEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMG 622 (742)
Q Consensus 543 ~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~G 622 (742)
... ..+++...++.++.. ..+|+..+ +...+ .+...+.....|.+.|
T Consensus 224 ~~~-----~~~~~~~la~~gv~v-~~~P~~~~-------------------~~~~~--------~~~~~~~~~~~l~~aG 270 (359)
T cd01309 224 GAE-----GYKLADELAKHGIPV-IYGPTLTL-------------------PKKVE--------EVNDAIDTNAYLLKKG 270 (359)
T ss_pred chh-----HHHHHHHHHHcCCCE-EECccccc-------------------cccHH--------HhhcchhhHHHHHHcC
Confidence 432 366777777776531 22221110 00000 0122334556777887
Q ss_pred -CeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcce
Q 004611 623 -AISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLAD 701 (742)
Q Consensus 623 -v~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~AD 701 (742)
+.++++||++... ....+.....+ ...+++.+++|+++|.|||+++|+++++|+|++||.||
T Consensus 271 Gv~valgsD~~~~~-----~~~l~~~~~~a------------~~~gl~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~AD 333 (359)
T cd01309 271 GVAFAISSDHPVLN-----IRNLNLEAAKA------------VKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDAD 333 (359)
T ss_pred CceEEEECCCCCcc-----chhHHHHHHHH------------HHcCCCHHHHHHHHHHHHHHHhCCCCCcccCCCCCccC
Confidence 9999999985321 11111111111 12478999999999999999999999999999999999
Q ss_pred EEEECCCCCC--CCceEEEECCEEEe
Q 004611 702 LVLWKPSFFG--AKPEMVIKGGAIAW 725 (742)
Q Consensus 702 LVV~Dp~~~~--~~p~~Vi~~G~iV~ 725 (742)
|||||.+++. .++..||++|+++|
T Consensus 334 lvv~d~dpl~~~~~v~~v~i~G~~v~ 359 (359)
T cd01309 334 LVVWNGDPLEPTSKPEQVYIDGRLVY 359 (359)
T ss_pred EEEECCCcccccCcccEEEECCEEeC
Confidence 9999998764 58999999999986
No 110
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=99.86 E-value=9.2e-21 Score=209.90 Aligned_cols=298 Identities=23% Similarity=0.281 Sum_probs=192.5
Q ss_pred ceEEecCCCEEeecceeeccCCCCchH-HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCCC-CceEe
Q 004611 386 TEVIAGERFIVTAGAIDCHVHFICPQL-AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDDL-PLNFG 462 (742)
Q Consensus 386 teVIDa~G~iVtPGfID~HvH~~~P~~-~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~~-~vn~g 462 (742)
.++||++|++|+||+||.|+|+..|.. ..+.+.+|+..++.||++ ....++..+.......+....+..+.. .+++.
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 81 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVRVL 81 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCceeEE
Confidence 478999999999999999999987653 357788888888888874 555666656666777777776766554 44554
Q ss_pred ecCCC---CCC-ChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCcc----------------
Q 004611 463 FTGKG---NSA-KPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNE---------------- 522 (742)
Q Consensus 463 ~~~~g---~~~-~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne---------------- 522 (742)
+++.. ... ..+.+.++.+.|+.++|.+.....+...+..+++.+.++|.++.+|++...-
T Consensus 82 ~~~~~~~~~~~~~~~~i~~l~~~G~~~~k~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~~~g~~~~~~~ 161 (374)
T cd01317 82 PIGALTKGLKGEELTEIGELLEAGAVGFSDDGKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVASRLG 161 (374)
T ss_pred EEEEEeeCCCcccHHHHHHHHHCCcEEEEcCCcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCccCChhhHHhC
Confidence 44332 222 2667888888999999975433467888999999999999999999963110
Q ss_pred ---------chHHHHH--HHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeec
Q 004611 523 ---------SGFVEHT--IAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHH 591 (742)
Q Consensus 523 ---------~g~ve~~--l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hh 591 (742)
...+... +....+..+|+.|.+... ..+.++.++..++. .+. ....||
T Consensus 162 ~~~~p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~---~l~~i~~~~~~G~~---------~~~---------e~~~h~ 220 (374)
T cd01317 162 LPGIPPEAETIMVARDLELAEATGARVHFQHLSTAR---SLELIRKAKAKGLP---------VTA---------EVTPHH 220 (374)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHH---HHHHHHHHHHCCCC---------EEE---------EecHHH
Confidence 0011111 233457899999987532 34667666666542 111 123466
Q ss_pred cCCCchHHHHHhhh------hhhh--hhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhh--hccccCCC
Q 004611 592 LHKDIPEDVAFAES------RIRA--ETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKS--QRGSFGPS 661 (742)
Q Consensus 592 l~~~~~edia~a~~------Rir~--~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~--~~~~L~~~ 661 (742)
+..+. +++....+ .++. ...++++.+.+ |++++++||+.+.. ..+.....|.....+.. ...++.+.
T Consensus 221 L~ld~-~~~~~~~~~~k~~Pplr~~~~~~~l~~~~~~-G~i~~igsDh~p~~-~~~k~~~~~~~~~Gi~g~e~~l~~~~~ 297 (374)
T cd01317 221 LLLDD-EALESYDTNAKVNPPLRSEEDREALIEALKD-GTIDAIASDHAPHT-DEEKDLPFAEAPPGIIGLETALPLLWT 297 (374)
T ss_pred HhcCH-HHHhccCCceEEcCCCCCHHHHHHHHHHHhc-CCceEEEcCCCCCC-HHHccCCHhhCCCcHhHHHHHHHHHHH
Confidence 64442 22211111 1232 44567777765 99999999986543 21111112221111111 11111111
Q ss_pred cc-cCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC
Q 004611 662 AA-DNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF 709 (742)
Q Consensus 662 ~~-~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~ 709 (742)
.. ....++++++++++|.|||+++|+. .|+|++|+.|||++||++.
T Consensus 298 ~~~~~~~~~~~~~~~~~t~npA~~lgl~--~G~l~~G~~ADlvi~d~~~ 344 (374)
T cd01317 298 LLVKGGLLTLPDLIRALSTNPAKILGLP--PGRLEVGAPADLVLFDPDA 344 (374)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEECCCC
Confidence 11 2346799999999999999999997 4999999999999999764
No 111
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=99.86 E-value=4.4e-21 Score=211.53 Aligned_cols=284 Identities=21% Similarity=0.260 Sum_probs=186.1
Q ss_pred CCEEeecceeeccCCCCchH-HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecCCCCC
Q 004611 393 RFIVTAGAIDCHVHFICPQL-AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKGNS 469 (742)
Q Consensus 393 G~iVtPGfID~HvH~~~P~~-~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g~~ 469 (742)
|++|+||+||.|+|+..|.+ .++.+.+|+...+.||++ ....++..+.......++..++..+. ..++|++++....
T Consensus 1 G~~vlPG~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~~~ 80 (361)
T cd01318 1 GLLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGVTG 80 (361)
T ss_pred CCEEecCeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhccCceeEEEEEEeecC
Confidence 78999999999999988753 578899999999999984 55667766667778888877776654 4688888766433
Q ss_pred CChHHHHHHHHhcCceeEeccCC-----CCCHHHHHHHHHHHHHcCCEEEEEcCCCcc--c-------------------
Q 004611 470 AKPDELHEIIKAGAMGLKLHEDW-----GSTPAAIDNCLTVAEEYDIQVNIHTDTLNE--S------------------- 523 (742)
Q Consensus 470 ~~~~~l~e~i~aGa~glkl~~d~-----~~t~~~l~~~l~~A~e~g~~v~iH~dtlne--~------------------- 523 (742)
. +.+.++.+.|..|+|.+..+ ..+...+.++++.+. ..+.+|++...- .
T Consensus 81 ~--~~l~~~~~~~~~g~k~f~~~~~~~~~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~P~~a 155 (361)
T cd01318 81 S--EDLEELDKAPPAGYKIFMGDSTGDLLDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESAHPRIRDAEA 155 (361)
T ss_pred h--hhHHHHHHhhCcEEEEEEecCCCCcCCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhccCCCCcCCHHH
Confidence 2 46777777888899987632 246778888887764 789999974210 0
Q ss_pred --hHHHHH--HHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHH
Q 004611 524 --GFVEHT--IAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPED 599 (742)
Q Consensus 524 --g~ve~~--l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~ed 599 (742)
..+... +....+..+|+.|..... +.+.++.++ .++ ++++ ..||+..+. ++
T Consensus 156 E~~av~r~~~la~~~~~~~hi~Hvs~~~---~~~~i~~~k-~~v-----------t~ev---------~ph~L~l~~-~~ 210 (361)
T cd01318 156 AAVATARALKLARRHGARLHICHVSTPE---ELKLIKKAK-PGV-----------TVEV---------TPHHLFLDV-ED 210 (361)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEeCCCHH---HHHHHHHhC-CCe-----------EEEe---------CHHHhhcCH-HH
Confidence 001111 344568889999998643 345555444 122 2221 245554432 22
Q ss_pred HHHhhh--------hhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhh--hhccccCCCcccCCCCc
Q 004611 600 VAFAES--------RIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMK--SQRGSFGPSAADNDNLR 669 (742)
Q Consensus 600 ia~a~~--------Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~--~~~~~L~~~~~~~~gl~ 669 (742)
+..... |-.....++++.+.+ |.+++++||+.+.. ..+.....|..+..+. +...++........+++
T Consensus 211 ~~~~~~~~k~~PPlr~~~d~~aL~~~l~~-G~id~i~SDh~P~~-~~~k~~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~ 288 (361)
T cd01318 211 YDRLGTLGKVNPPLRSREDRKALLQALAD-GRIDVIASDHAPHT-LEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILS 288 (361)
T ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHHHhC-CCCCEEeeCCCCCC-HHHccCChhhCCCCCccHHHHHHHHHHHHHcCCCC
Confidence 211111 223445678888877 99999999986432 1111112232222221 11111111111345799
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCC
Q 004611 670 IRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSF 709 (742)
Q Consensus 670 ~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~ 709 (742)
++++++++|.|||+++|+++ +|+|++|+.|||+|||++.
T Consensus 289 l~~a~~~~t~nPA~~lgl~~-~G~i~~G~~ADlvv~d~~~ 327 (361)
T cd01318 289 LSRVVRLTSHNPARIFGIKN-KGRIAEGYDADLTVVDLKE 327 (361)
T ss_pred HHHHHHHHhHHHHHHhCCCC-CCccCCCCcCCEEEEeCCC
Confidence 99999999999999999966 7999999999999999874
No 112
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.85 E-value=4e-19 Score=201.85 Aligned_cols=361 Identities=24% Similarity=0.289 Sum_probs=190.2
Q ss_pred EEEEecEEEcCCC-ce--eeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc--
Q 004611 336 TVITNAVIIDHTG-IF--KADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP-- 410 (742)
Q Consensus 336 lVI~Na~Iid~~g-i~--~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P-- 410 (742)
++|+|++|+|+.+ +. .++|.|+||+|++|++... .+.++||++|++|+|||||+|+|+..+
T Consensus 2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~--------------~~~eVIDa~G~vVmPGfID~HvHg~gG~~ 67 (556)
T TIGR03121 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT--------------KPAKVIDASGKLVMAGGVDSHTHIAGPKV 67 (556)
T ss_pred EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC--------------CCCeEEECCCCEEEeCEEeeeECCCcccc
Confidence 6899999999744 43 4799999999999986421 134899999999999999999998532
Q ss_pred --------hHHH-------HHHHHHHHH-----------HHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCC-ceEe-
Q 004611 411 --------QLAH-------DAIASGITT-----------LVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLP-LNFG- 462 (742)
Q Consensus 411 --------~~~~-------~al~~GvTT-----------l~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~-vn~g- 462 (742)
+... ..++.|+|+ ++.+|++-+. ..--.+...+...+.....| ++.+
T Consensus 68 ~~~R~~~pE~~~~~~~~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~-----eaa~~p~~arh~h~e~~~~p~~d~~~ 142 (556)
T TIGR03121 68 NVGRLLRPEDHRRDPEPRTGLTRAGSGFSVPSTYATGYRYARMGYTTVF-----EAAVPPLNARHTHEEFADTPILDKGG 142 (556)
T ss_pred ccccccCHHHHhhcchhhhhhcCCCcceEehhHhHHHHHHHhCCccEEe-----cCCCCccchhhhHHHhccCccccccc
Confidence 2111 112223211 1223331000 00001122222233333333 1211
Q ss_pred ecCCCC---------CCChHHHHHH----HH-hcCceeEeccC---------------------CCCCHHHHH-HHHHHH
Q 004611 463 FTGKGN---------SAKPDELHEI----IK-AGAMGLKLHED---------------------WGSTPAAID-NCLTVA 506 (742)
Q Consensus 463 ~~~~g~---------~~~~~~l~e~----i~-aGa~glkl~~d---------------------~~~t~~~l~-~~l~~A 506 (742)
+..-|+ ..+.+.++.. ++ ....|+|+... |+.||.++- ...+..
T Consensus 143 ~~~~gnn~~~~~~~~~~~~~~~~~~vaw~l~~tk~~giK~vnpgG~~a~~~~~~~~~~d~~~~~~~vtp~~i~~~l~~~~ 222 (556)
T TIGR03121 143 YTLLGNNWFLLEYLKDGEPEKAAAYVAWLLKATKGYGIKVVNPGGVEAWGWGENVLSLDDPVPYFGITPREIIKGLARAN 222 (556)
T ss_pred eEEecchHHHHHHHhcCCHHHHHHHHHHHHHhccceEEEEECCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHH
Confidence 111111 1233333332 22 35667776643 356776664 555667
Q ss_pred HHcCCEEEE--EcCCCccchHHHHHHH---HhcCCe------EEEEeccc--CCC-------CCCHHHHHHhhhcC-ccc
Q 004611 507 EEYDIQVNI--HTDTLNESGFVEHTIA---AFKGRT------IHTYHSEG--AGG-------GHAPDIIKVCGVKN-VLP 565 (742)
Q Consensus 507 ~e~g~~v~i--H~dtlne~g~ve~~l~---a~~g~~------ih~~H~~g--agg-------ghapdiI~~a~~~~-vlp 565 (742)
++++++-.+ |+-.+.-.|.++.+++ ..+|.. +|..|..- -|| ..++++++...... +.
T Consensus 223 e~l~lph~~h~H~nnlg~pgn~~~t~~t~~~~~g~~~~~~~~~h~tH~qf~syg~~~~~~f~s~a~~~a~~vn~~~~~t- 301 (556)
T TIGR03121 223 EELGLPHSIHVHCNNLGVPGNYETTLDTLDAAEGVKPNRNQVLHLTHVQFHSYGGTSWRDFESGAEKIADYVNANPNVT- 301 (556)
T ss_pred HhcCCCceEEEecCCCCCCCchHHHHHHHHHhcCCCCCccceeEeeeeeeeccCCCCCCCcchhHHHHHHHHhcCCCEE-
Confidence 788887555 5556666666666554 455766 88888742 111 12334444443321 11
Q ss_pred CCCCCCCCCcchhhhhhcce------EEEeeccCCC--chHHHH---------H-hhhh--hhhhhhh--HHH-HHHHCC
Q 004611 566 SSTNPTRPYTSNTIDEHLDM------LMVCHHLHKD--IPEDVA---------F-AESR--IRAETIA--AED-ILHDMG 622 (742)
Q Consensus 566 sstnp~~p~t~~tl~e~ld~------l~v~hhl~~~--~~edia---------~-a~~R--ir~~t~a--~~~-~L~d~G 622 (742)
-..-.. ++.+-.-| .+..+.++.. .-.|+. | ++.+ +-+-.++ ++- +|.+-=
T Consensus 302 ---~d~Gqv---~fg~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~gvvp~~y~~~~~v~~~qwaiglel~Ll~~dp 375 (556)
T TIGR03121 302 ---IDVGQV---TFGETTTMTADGPMEYDLHKLTGLKWANKDVELETGSGVVPFKYSPKNPVHALQWAIGLELFLLIKDP 375 (556)
T ss_pred ---EEeCce---ecCCceEEeccchhhhhcccCCCCceeeeeeecccCCceEEeeecCCCcchHHHHHHhhHHHHhcCCc
Confidence 000000 01111111 0000111000 000000 0 0111 1111112 222 223224
Q ss_pred CeEEEecCCCccCcc---chhhhhhhhhhhhhhhh-----------ccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 623 AISIISSDSQAMGRI---GEVISRTWQTAHKMKSQ-----------RGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 623 v~~~lgSDs~a~gr~---ge~i~~~~~~~~~m~~~-----------~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
-.+.++||++.-|.+ .+.+ .|....+.++. +..|+. ....++++++++|+|.|||++||+.
T Consensus 376 ~~~~~ttDhPnggpf~~YP~ii--~~lm~~~~r~~~~~~~~~~~~~~~~l~~---~~Re~sL~EI~~mtTanPAkaLGL~ 450 (556)
T TIGR03121 376 WRVFLTTDHPNGGPFTRYPRII--ALLMSRKYREDMLSTVHPWAAARSTLGG---IDREYSLYEIAIMTRAGPAKLLGLT 450 (556)
T ss_pred ceeEEeccCCCCCcccchHHHH--HHHcCHHHHHHHHHhcCHHHHhhccccc---ccCCCCHHHHHHHHHHHHHHHhCCC
Confidence 589999999865543 3333 12222222221 112211 3558999999999999999999998
Q ss_pred CCcccccCCCcceEEEECCCC------------CCCCceEEEECCEEEeccC
Q 004611 689 QFVGSVEVGKLADLVLWKPSF------------FGAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 689 d~vGSIe~GK~ADLVV~Dp~~------------~~~~p~~Vi~~G~iV~~~~ 728 (742)
+ +|+|++|+.|||+|||.+. ...++.+||++|++|+.+.
T Consensus 451 d-kG~L~pGa~ADIaI~D~~~~~~~~~~~~v~~~~~~v~~Tik~G~vV~~dG 501 (556)
T TIGR03121 451 D-RGHLGVGADADIAVYDINPDDVDTDYADVEKAFSTALYVFKDGEIVVKDG 501 (556)
T ss_pred C-CCCcCCCCcCCEEEEeCcccccCCchHHHhhccCCccEEEECCEEEEECC
Confidence 6 6999999999999998642 1247899999999999853
No 113
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.84 E-value=1.7e-18 Score=195.99 Aligned_cols=364 Identities=23% Similarity=0.288 Sum_probs=185.6
Q ss_pred EEecEEEcCCC-c--eeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC------
Q 004611 338 ITNAVIIDHTG-I--FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI------ 408 (742)
Q Consensus 338 I~Na~Iid~~g-i--~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~------ 408 (742)
|+|++|+|+.+ . ..++|.|+||+|++|++.. ++.++||++|++|+|||||+|+|+.
T Consensus 1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~---------------~~~~vID~~G~~VmPGfID~HtH~~gg~~~~ 65 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA---------------KPAKVIDASGKVVMAGGVDMHSHIAGGKVNV 65 (541)
T ss_pred CEEEEEEcCCCcccccccEEEEECCEEEEEccCC---------------CCCeEEECCCCEEECCeeeeeeCcccccccc
Confidence 68999999654 3 5689999999999998631 2357999999999999999999974
Q ss_pred ----CchHHHHHHH--HHHHHHHhCCCCCCCCCc---------ccccCC--ChHHHHHHHHhcCCCCc-eEe-ecCCCC-
Q 004611 409 ----CPQLAHDAIA--SGITTLVGGGTGPADGTR---------ATTCTP--APSQMKLMLQSTDDLPL-NFG-FTGKGN- 468 (742)
Q Consensus 409 ----~P~~~~~al~--~GvTTl~~gGtgp~~~~~---------~~~~t~--~~~~i~~~l~a~~~~~v-n~g-~~~~g~- 468 (742)
.|+....... .+.+..-.|.+.|.+... ++...+ .+...+...+.....|+ +.+ +..-|+
T Consensus 66 ~r~~~pe~~~~~~~~~~~~~~~~~g~~~pst~~tgy~ya~mGytt~~e~a~~p~~a~h~h~e~~~~p~~d~~~~~~~gnn 145 (541)
T cd01304 66 GRILRPEDHRRDPVPKGALRRAGVGFSVPSTLATGYRYAEMGYTTAFEAAMPPLNARHTHEEMADTPILDKGAYPLLGNN 145 (541)
T ss_pred ccccChhhhhccccccccccccCCCccCCCchHhhhHHHhcCcceeecccCCcccchhhhHHhccCccccccceEEecch
Confidence 2332221100 011110001111111000 011100 11222222233333331 111 111111
Q ss_pred --------CCChHHHHHH----HH-hcCceeEeccC---------------------CCCCHHHH-HHHHHHHHHcCCEE
Q 004611 469 --------SAKPDELHEI----IK-AGAMGLKLHED---------------------WGSTPAAI-DNCLTVAEEYDIQV 513 (742)
Q Consensus 469 --------~~~~~~l~e~----i~-aGa~glkl~~d---------------------~~~t~~~l-~~~l~~A~e~g~~v 513 (742)
..+.+.++.. ++ ....|+|+... |+.||.++ ....+..++++++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~vaw~l~~tk~~giK~vnpgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph 225 (541)
T cd01304 146 WFVLEYLRDGDMEKLAAYVAWTLKASKGYGIKVVNPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPH 225 (541)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccceEEEEECCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCce
Confidence 1223333332 22 35667776643 34677665 56667778889887
Q ss_pred EEEc--CCCccchHHHHHHHH---hcCC-------eEEEEecc--cCCCC-------CCHHHHHHhhhc-CcccCCCCCC
Q 004611 514 NIHT--DTLNESGFVEHTIAA---FKGR-------TIHTYHSE--GAGGG-------HAPDIIKVCGVK-NVLPSSTNPT 571 (742)
Q Consensus 514 ~iH~--dtlne~g~ve~~l~a---~~g~-------~ih~~H~~--gaggg-------hapdiI~~a~~~-~vlpsstnp~ 571 (742)
.+|. -.+...|.++.+++. .++. .+|..|.. +-++. .+.++.+..... ++. -..
T Consensus 226 ~iH~h~nnlg~pgn~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~~~~~~~s~a~~i~~~~n~~~~it----~D~ 301 (541)
T cd01304 226 SIHVHCNNLGVPGNYETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDFESGAERIADYVNANDHVT----IDV 301 (541)
T ss_pred EEEEccccCCCCCcHHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccCCcccHhHHHHHHHHHHHcCCCEE----EEe
Confidence 7766 355556666666553 3354 48888886 33331 122333333322 111 111
Q ss_pred CCCcchhhhhhcce------EEEeeccCCC--chHHH---------HHh-hhhhh--hh--hhhHHH-HHHHCCCeEEEe
Q 004611 572 RPYTSNTIDEHLDM------LMVCHHLHKD--IPEDV---------AFA-ESRIR--AE--TIAAED-ILHDMGAISIIS 628 (742)
Q Consensus 572 ~p~t~~tl~e~ld~------l~v~hhl~~~--~~edi---------a~a-~~Rir--~~--t~a~~~-~L~d~Gv~~~lg 628 (742)
-++++. +-.-| .+..+.++.. .-.|+ .|. +.+.. .- .+.++- .|.+---.++++
T Consensus 302 G~v~f~---~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~Gvvp~~y~~k~~v~~lqwaiglEl~ll~~dp~~~~~t 378 (541)
T cd01304 302 GQVIFG---ETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSGVVPFIYSPKNPVNALQWAIGLELFLLIDDPWKVILT 378 (541)
T ss_pred CceecC---CcEEEEccchhhcccccccCCceeeeeeEeccCCceEEeEecCCCCchHHHHHHHHHHHHHhCCcceEEee
Confidence 111111 00000 0001111000 00000 000 00111 11 112232 223223489999
Q ss_pred cCCCccCcc---chhhhhhhhhh---------hhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccC
Q 004611 629 SDSQAMGRI---GEVISRTWQTA---------HKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEV 696 (742)
Q Consensus 629 SDs~a~gr~---ge~i~~~~~~~---------~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~ 696 (742)
||++.-+.+ ...+.-..+.. ++....+..|+. ....++++++++++|.|||+++|+++ .|+|++
T Consensus 379 TDhPn~gpf~~YP~~i~~lm~~~~r~~~~~~~~~~~~~~~~l~~---~~reLSLeei~~mtT~nPAKiLGL~~-kG~L~~ 454 (541)
T cd01304 379 TDHPNGGPFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPG---IDREYSLYEIAIMTRAGPAKLLGLSD-KGHLGV 454 (541)
T ss_pred cCCCCCCCcccHHHHHHHHhCHHHHHHHHHhcCHHHHhhccccC---CCCCCCHHHHHHHHHHHHHHHhCCCC-CCccCC
Confidence 999865533 33332111110 111111222221 34568999999999999999999964 799999
Q ss_pred CCcceEEEECCCCC-------------CCCceEEEECCEEEecc
Q 004611 697 GKLADLVLWKPSFF-------------GAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 697 GK~ADLVV~Dp~~~-------------~~~p~~Vi~~G~iV~~~ 727 (742)
|+.|||+|+|++.. ..++.+||++|++|+.+
T Consensus 455 G~~ADLvIfD~n~~~v~~~dl~s~~~~~gkV~~Tiv~GkvVv~d 498 (541)
T cd01304 455 GADADIAIYDDDPDQVDPSDYEKVEKAFSRAAYVLKDGEIVVKD 498 (541)
T ss_pred CCcCCEEEEeCCcCccCchhhcCceeecCcEEEEEECCEEEEEC
Confidence 99999999997743 12789999999999974
No 114
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.83 E-value=2.5e-19 Score=195.75 Aligned_cols=283 Identities=21% Similarity=0.245 Sum_probs=162.0
Q ss_pred EEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCchH------HHHHHHHHHHHHHh
Q 004611 353 DIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQL------AHDAIASGITTLVG 426 (742)
Q Consensus 353 dI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P~~------~~~al~~GvTTl~~ 426 (742)
+|+|+||+|++|++...+ ..+.++||++|++|+|||||+|+|+..|.. ...++..|+||+++
T Consensus 1 ~i~i~~g~I~~i~~~~~~------------~~~~~~id~~g~~v~PG~iD~H~H~~~~g~~~~~~~~~~a~~~GvTtvvd 68 (338)
T cd01307 1 DVAIENGKIAAVGAALAA------------PAATQIVDAGGCYVSPGWIDLHVHVYQGGTRYGDRPDMIGVKSGVTTVVD 68 (338)
T ss_pred CEEEECCEEEEccCCCCC------------CCCCeEEECCCCEEecCeEEeeecCCCCCcccCCCHhHHHHcCceeEEEe
Confidence 589999999999984221 235789999999999999999999976642 34567777777776
Q ss_pred CCCCCCCCCcccccCCChHH-HHHHHHhcCC---CCceEeecCCCCC---C-----ChHHHHHHH---HhcCceeEeccC
Q 004611 427 GGTGPADGTRATTCTPAPSQ-MKLMLQSTDD---LPLNFGFTGKGNS---A-----KPDELHEII---KAGAMGLKLHED 491 (742)
Q Consensus 427 gGtgp~~~~~~~~~t~~~~~-i~~~l~a~~~---~~vn~g~~~~g~~---~-----~~~~l~e~i---~aGa~glkl~~d 491 (742)
.+. .. ...... .+...+.... ..+++++++.... . ..+.+++.+ ..|+.|+|....
T Consensus 69 ~~~-------~~--~~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~ 139 (338)
T cd01307 69 AGS-------AG--ADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARAS 139 (338)
T ss_pred CCC-------CC--CCCHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEee
Confidence 432 11 122333 3333333332 3355555543211 1 123333333 357778887432
Q ss_pred C----CCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcC--CeEEEEecccCCCCCC----HHHHHHhhhc
Q 004611 492 W----GSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKG--RTIHTYHSEGAGGGHA----PDIIKVCGVK 561 (742)
Q Consensus 492 ~----~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g--~~ih~~H~~gagggha----pdiI~~a~~~ 561 (742)
. ......+..++++|.+.++++.+|++...+ -+++.+..... ...|++....-..... .+.+..+.+.
T Consensus 140 ~~~~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~~--~~~~~~~~l~~g~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~ 217 (338)
T cd01307 140 KSVVGEWGIKPLELAKKIAKEADLPLMVHIGSPPP--ILDEVVPLLRRGDVLTHCFNGKPNGIVDEEGEVLPLVRRARER 217 (338)
T ss_pred cccccccCCcHHHHHHHHHHHcCCCEEEEeCCCCC--CHHHHHHHhcCCCEEEeccCCCCCCCCCCCCcHHHHHHHHHhC
Confidence 1 112334788999999999999999964332 13444433332 3455555322000000 2344444444
Q ss_pred CcccCCCCCCCCCcchhhhhhcceEEE-eeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCC-eEEEecCCCccCccch
Q 004611 562 NVLPSSTNPTRPYTSNTIDEHLDMLMV-CHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGA-ISIISSDSQAMGRIGE 639 (742)
Q Consensus 562 ~vlpsstnp~~p~t~~tl~e~ld~l~v-~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv-~~~lgSDs~a~gr~ge 639 (742)
++. +. +|..... +......+.+.|+ ..++++|....+....
T Consensus 218 G~~----------------------~d~~~G~~~~---------------~~~~~~~l~~~G~~~~~lstD~~~~~~~~~ 260 (338)
T cd01307 218 GVI----------------------FDVGHGTASF---------------SFRVARAAIAAGLLPDTISSDIHGRNRTNG 260 (338)
T ss_pred CEE----------------------EEeCCCCCch---------------hHHHHHHHHHCCCCCeeecCCccccCCCCC
Confidence 432 11 2221100 0011123445686 5678999743222110
Q ss_pred hhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCC
Q 004611 640 VISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPS 708 (742)
Q Consensus 640 ~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~ 708 (742)
..........++ ...+++++++++++|.|||+++|++ .+|+|++|+.|||++|+.+
T Consensus 261 p~~~l~~~l~~l------------~~~gi~~ee~~~~~T~NpA~~lgl~-~~G~l~~G~~ad~~v~~~~ 316 (338)
T cd01307 261 PVYALATTLSKL------------LALGMPLEEVIEAVTANPARMLGLA-EIGTLAVGYDADLTVFDLK 316 (338)
T ss_pred ccccHHHHHHHH------------HHcCCCHHHHHHHHHHHHHHHcCCC-CCCccCCCCcCCEEEEeCC
Confidence 000001111111 1248999999999999999999994 5899999999999999865
No 115
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.83 E-value=1.3e-19 Score=186.92 Aligned_cols=299 Identities=22% Similarity=0.354 Sum_probs=185.8
Q ss_pred cccEEEEecEEEc-CCCcee-eEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCCc
Q 004611 333 SLDTVITNAVIID-HTGIFK-ADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICP 410 (742)
Q Consensus 333 ~~dlVI~Na~Iid-~~gi~~-adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~P 410 (742)
+.|++++|++++| ..|+.. .+|.|.||||+++++- ..+..+++||++|+||.||+||.|+|....
T Consensus 3 qfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~d~-------------~apa~tq~Ida~Gc~VspG~iDlHvHvy~g 69 (386)
T COG3964 3 QFDILLTGGRLIDPARGIDEITNIAIINGKIAAADDY-------------PAPAETQIIDADGCIVSPGLIDLHVHVYYG 69 (386)
T ss_pred ccceeeeCCeecccccccCccceeeeecCeEEeccCc-------------CCChhheEEccCccEeccCeeeeeeEEecC
Confidence 4699999999999 556533 7999999999999952 235679999999999999999999997422
Q ss_pred h------HHHHHHHHHHHHHHhCCCCCCCCCcccccCCCh-HHHHHHHHhcCC---CCceEeecCCCCC--------CCh
Q 004611 411 Q------LAHDAIASGITTLVGGGTGPADGTRATTCTPAP-SQMKLMLQSTDD---LPLNFGFTGKGNS--------AKP 472 (742)
Q Consensus 411 ~------~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~-~~i~~~l~a~~~---~~vn~g~~~~g~~--------~~~ 472 (742)
. .-.....+|+||+++.|..- ..+- ...+..+++... .-+|+++.|-... -+.
T Consensus 70 gt~~~v~pd~~ga~~GvTTvVDAGSaG---------aanf~gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~d~~nid~ 140 (386)
T COG3964 70 GTEGGVRPDMYGAPNGVTTVVDAGSAG---------AANFDGFYRTVIEASRVRIKAFLNVSPPGLTASNELYDPDNIDE 140 (386)
T ss_pred CCccCcCHHHccccCCceEEEecCCcC---------ccchhhHHHHhhcchhheeeeeeeccCcceeeehhhCChhhCCH
Confidence 1 24567889999999987610 0111 122233333221 1234433322111 123
Q ss_pred HHHHHHHHh---cCceeEecc------CCCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhc--CCeEEEE
Q 004611 473 DELHEIIKA---GAMGLKLHE------DWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFK--GRTIHTY 541 (742)
Q Consensus 473 ~~l~e~i~a---Ga~glkl~~------d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~--g~~ih~~ 541 (742)
..+.+..+. -..|+|... .|+.+|- ..+++.|+..++++.+|...+.. ..++.++... +...|+|
T Consensus 141 d~i~aa~reh~d~ivGlKvR~s~~~~g~~GitPl--~la~~ia~~~klPlmvHigePp~--~~dEvlerL~~GDIitHcf 216 (386)
T COG3964 141 DKIHAAFREHRDVIVGLKVRVSTEDIGEYGITPL--TLALRIANDLKLPLMVHIGEPPV--LMDEVLERLRRGDIITHCF 216 (386)
T ss_pred HHHHHHHHhCcCcEEEEEEEeeeccccccCCchH--HHHHHHHhhcCCceEEecCCCCc--cHHHHHHhccCCceeeeec
Confidence 344444442 234777544 4777774 45778899999999999965333 3566666543 3466888
Q ss_pred ecccCCC----CCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeecc-CCCchHHHHHhhhhhhhhhhhHHH
Q 004611 542 HSEGAGG----GHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHL-HKDIPEDVAFAESRIRAETIAAED 616 (742)
Q Consensus 542 H~~gagg----ghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl-~~~~~edia~a~~Rir~~t~a~~~ 616 (742)
|.....- |---..++.|.+.++. |. .-|.. +.+ +...+
T Consensus 217 ngkpn~~l~~dg~vr~~vrra~erGV~---------fD------------~ghG~asfs----------------f~vAr 259 (386)
T COG3964 217 NGKPNTILTDDGVVRAEVRRARERGVI---------FD------------AGHGRASFS----------------FNVAR 259 (386)
T ss_pred cCCCCCccccchhHHHHHHHHHhcceE---------EE------------ccCCcceee----------------HHHHH
Confidence 7543211 1111333444454442 10 11211 110 11112
Q ss_pred HHHHCCC-eEEEecCCCccCcc-chhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccc
Q 004611 617 ILHDMGA-ISIISSDSQAMGRI-GEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSV 694 (742)
Q Consensus 617 ~L~d~Gv-~~~lgSDs~a~gr~-ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSI 694 (742)
...+.|. +.+++||-....++ +.+..-.|-...-| .-|+++.+.+.++|.|||..++++ .+|+|
T Consensus 260 ~aia~GllP~~ISSDlh~~~~~n~Pv~dla~~mSKll-------------algmpl~~Vi~avT~npA~~i~l~-~~gtL 325 (386)
T COG3964 260 RAIANGLLPDIISSDLHTITKLNGPVYDLAWIMSKLL-------------ALGMPLTDVINAVTHNPAVLIGLA-EIGTL 325 (386)
T ss_pred HHHhcCCCcceeeccceeeeecCchHHHHHHHHHHHH-------------HcCCcHHHHHHHHhcCHHHHhCcc-ccCcc
Confidence 2233466 78899995443333 33444444322222 349999999999999999999998 59999
Q ss_pred cCCCcceEEEECCC
Q 004611 695 EVGKLADLVLWKPS 708 (742)
Q Consensus 695 e~GK~ADLVV~Dp~ 708 (742)
+||..|||+|++..
T Consensus 326 a~G~~aD~tvf~lk 339 (386)
T COG3964 326 APGAFADITVFKLK 339 (386)
T ss_pred CCCcccceEEEEec
Confidence 99999999999743
No 116
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.82 E-value=5.6e-19 Score=198.78 Aligned_cols=273 Identities=17% Similarity=0.211 Sum_probs=174.5
Q ss_pred ecCCCEEeecceeeccCCCCc-----hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCCceEeec
Q 004611 390 AGERFIVTAGAIDCHVHFICP-----QLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFT 464 (742)
Q Consensus 390 Da~G~iVtPGfID~HvH~~~P-----~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~vn~g~~ 464 (742)
|++|++|+|||||+|+|+.++ ++...++..|+||++.. |.+ .....+...++.+++..++.++++.+.
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~~~~~~~~~~~a~~~GvTtvv~~---p~~----~~~v~g~~~~~~~~~~a~~~p~~~~~~ 73 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESSMLTPSEFAKAVLPHGTTTVIAD---PHE----IANVAGVDGIEFMLEDAKKTPLDIFWM 73 (422)
T ss_pred CCCCCEEccCEEEccCCcCCCCCChHHHHHHHHCCCcEEEEeC---CCC----CCcCCCHHHHHHHHHHHhCCCceEEEe
Confidence 789999999999999998643 34566777788887762 222 223467788888888888888887665
Q ss_pred CCCCC---------C--ChHHHHHHHHh-cCceeEeccCCC---CCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHH
Q 004611 465 GKGNS---------A--KPDELHEIIKA-GAMGLKLHEDWG---STPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHT 529 (742)
Q Consensus 465 ~~g~~---------~--~~~~l~e~i~a-Ga~glkl~~d~~---~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~ 529 (742)
...+. . ..+.++++.+. ++.+++...+|. ...+.+.+.++.|++++.++.+|+..... .-+...
T Consensus 74 ~p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~-~~L~a~ 152 (422)
T cd01295 74 LPSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGVIEGDDEMLAKIQAAKKAGKPVDGHAPGLSG-EELNAY 152 (422)
T ss_pred CCCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccccCCcHHHHHHHHHHHhCCCEEEEeCCCCCH-HHHHHH
Confidence 54321 1 25667777764 889999887774 46788899999999999999999954331 112222
Q ss_pred HHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhh
Q 004611 530 IAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRA 609 (742)
Q Consensus 530 l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~ 609 (742)
+.+ |. ...|... ..++.++.. +.++..+ ..+... ..++...
T Consensus 153 l~a--Gi--~~dH~~~----~~eea~e~l-~~G~~i~---------------------i~~g~~---~~~~~~~------ 193 (422)
T cd01295 153 MAA--GI--STDHEAM----TGEEALEKL-RLGMYVM---------------------LREGSI---AKNLEAL------ 193 (422)
T ss_pred HHc--CC--CCCcCCC----cHHHHHHHH-HCCCEEE---------------------EECccc---HhhHHHH------
Confidence 321 21 1124322 134555554 3444311 111110 0111101
Q ss_pred hhhhHHHHHH-HCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 610 ETIAAEDILH-DMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 610 ~t~a~~~~L~-d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
.+.+. ..+..++++||++.+..+-. + ......++. ....+++++++++++|.|||+.+|+
T Consensus 194 -----~~~l~~~~~~~i~l~TD~~~~~~~~~---~-g~~~~v~r~---------a~~~g~s~~eal~~aT~n~A~~~gl- 254 (422)
T cd01295 194 -----LPAITEKNFRRFMFCTDDVHPDDLLS---E-GHLDYIVRR---------AIEAGIPPEDAIQMATINPAECYGL- 254 (422)
T ss_pred -----HHhhhhccCCeEEEEcCCCCchhhhh---c-chHHHHHHH---------HHHcCCCHHHHHHHHhHHHHHHcCC-
Confidence 11111 14789999999853321100 0 000011100 0134789999999999999999999
Q ss_pred CCcccccCCCcceEEEECCCCCCCCceEEEECCEEEeccCC
Q 004611 689 QFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMG 729 (742)
Q Consensus 689 d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~~g 729 (742)
+.+|+|++|+.|||++|+. .-..++..||++|++||..-|
T Consensus 255 ~~~G~i~~G~~AD~vv~~~-~~~~~v~~v~~~G~~v~~r~~ 294 (422)
T cd01295 255 HDLGAIAPGRIADIVILDD-LENFNITTVLAKGIAVVERHG 294 (422)
T ss_pred CCCcccCCCCcCCEEEECC-CCCCceEEEEECCeEEEEecC
Confidence 5589999999999999983 234588999999999998764
No 117
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.82 E-value=2.3e-18 Score=196.71 Aligned_cols=179 Identities=23% Similarity=0.303 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhc---------CCeEEEEecccCCCCCCHHHHHHhhhcCcc
Q 004611 494 STPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFK---------GRTIHTYHSEGAGGGHAPDIIKVCGVKNVL 564 (742)
Q Consensus 494 ~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~---------g~~ih~~H~~gaggghapdiI~~a~~~~vl 564 (742)
.+++.+.++++.|+++|+++.+|+.. ...++..++.+. +....+.|.... .++.++.+++.++.
T Consensus 292 ~~~e~l~~~~~~a~~~g~~v~~Ha~g---d~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~----~~~~~~~l~~~gv~ 364 (479)
T cd01300 292 ISPEELEELVRAADEAGLQVAIHAIG---DRAVDTVLDALEAALKDNPRADHRHRIEHAQLV----SPDDIPRFAKLGVI 364 (479)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEec---HHHHHHHHHHHHHHHHhcCCCCCCceeeecccC----CHHHHHHHHHcCCc
Confidence 47899999999999999999999953 222444333311 334566776654 47888888888875
Q ss_pred cCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhh
Q 004611 565 PSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRT 644 (742)
Q Consensus 565 psstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~ 644 (742)
.+.+ |...+... .......-..-+...+.+.+.+.+.|+.+++|||++... .+.+...
T Consensus 365 ~~~~-P~~~~~~~-------------------~~~~~~~lg~~~~~~~~p~~~~~~~Gv~v~lGSD~~~~~--~~p~~~~ 422 (479)
T cd01300 365 ASVQ-PNHLYSDG-------------------DAAEDRRLGEERAKRSYPFRSLLDAGVPVALGSDAPVAP--PDPLLGI 422 (479)
T ss_pred eEeC-cccccCch-------------------HHHHHhcccHHHHhcCchHHHHHHCCCeeeccCCCCCCC--CCHHHHH
Confidence 4433 21111000 000000000112334556677888899999999985422 1112122
Q ss_pred hhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEE
Q 004611 645 WQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVL 704 (742)
Q Consensus 645 ~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV 704 (742)
|...... ...+.... ....++++.++|+++|+|||+++|+++++|+|++||.|||||
T Consensus 423 ~~av~~~-~~~~~~~~--~~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk~ADlvv 479 (479)
T cd01300 423 WAAVTRK-TPGGGVLG--NPEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479 (479)
T ss_pred HHHheee-CCCCCCCC--CccccCCHHHHHHHHHHHHHHHhccccccccccCCcccceeC
Confidence 2111100 00000000 134689999999999999999999999999999999999986
No 118
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=6.9e-18 Score=181.89 Aligned_cols=109 Identities=24% Similarity=0.199 Sum_probs=78.9
Q ss_pred hhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 609 AETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 609 ~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
..+++..+.|.+.|+++.+|||..+.. +......+-.|... |.... ....++++++|.++|+|+|++||++
T Consensus 308 ~sG~~~vr~lL~~~v~VgLGtDv~~~s-----~l~a~r~A~~~s~h---L~~~~-~~~~Ls~~e~L~lATi~GA~aLg~d 378 (439)
T KOG3968|consen 308 GSGIPRVRELLDIGVIVGLGTDVSGCS-----ILNALRQAMPMSMH---LACVL-DVMKLSMEEALYLATIGGAKALGRD 378 (439)
T ss_pred ccCCccHHHHHhcCceEeecCCccccc-----cHHHHHHHHHHHHH---HHhcc-CcccCCHHHHHHHHhccchhhccCC
Confidence 345566777788899999999975321 11111111111110 11100 3468999999999999999999999
Q ss_pred CCcccccCCCcceEEEECCCCCC----------------------CCceEEEECCEEEec
Q 004611 689 QFVGSVEVGKLADLVLWKPSFFG----------------------AKPEMVIKGGAIAWA 726 (742)
Q Consensus 689 d~vGSIe~GK~ADLVV~Dp~~~~----------------------~~p~~Vi~~G~iV~~ 726 (742)
+..||+++||.+|++++|.+.+. .++..||++|+.|+.
T Consensus 379 ~~~Gs~eVGK~fDai~id~s~~~~~l~~~~~~~~lI~~~v~~g~drni~~V~V~Gk~v~~ 438 (439)
T KOG3968|consen 379 DTHGSLEVGKYFDAIIIDLSAPESPLYRFSGHHDLISKVVYNGDDRNIAEVFVAGKLVKQ 438 (439)
T ss_pred CcccceecccccceEEEeCCCCcchhhhccchHHHHHHHHhcCCCCceEEEEEccEEecc
Confidence 99999999999999999977541 288999999999875
No 119
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.5e-18 Score=179.35 Aligned_cols=310 Identities=20% Similarity=0.240 Sum_probs=180.9
Q ss_pred EEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCC--------
Q 004611 336 TVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHF-------- 407 (742)
Q Consensus 336 lVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~-------- 407 (742)
++|.|++|+..+.+..+.|.|+||+|..|..... +....+|++|.+++||+||.|+--
T Consensus 1 ~~lsnarivl~D~v~~gsv~i~DG~Ia~i~~g~s--------------~~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PR 66 (377)
T COG3454 1 MILSNARIVLEDRVVNGSVLIRDGLIADIDEGIS--------------PLAAGIDGEGDYLLPGLIELHTDNLERFMTPR 66 (377)
T ss_pred CccccceEEeecceeeeeEEEecceEeeeccccC--------------cccccccCCCCeecccchhhcchhhhcccCCC
Confidence 4789999999999988999999999999988633 236788999999999999999962
Q ss_pred ---CCchH------HHHHHHHHHHHHHhCCC-CCCCCCcccccCCChHHHHHHHHhcCC------CCceEeecCCCC---
Q 004611 408 ---ICPQL------AHDAIASGITTLVGGGT-GPADGTRATTCTPAPSQMKLMLQSTDD------LPLNFGFTGKGN--- 468 (742)
Q Consensus 408 ---~~P~~------~~~al~~GvTTl~~gGt-gp~~~~~~~~~t~~~~~i~~~l~a~~~------~~vn~g~~~~g~--- 468 (742)
.+|-. -...+.+|+||+.+.=. |-.. .......+++.|+++... ...+-.++-+-.
T Consensus 67 PgV~wp~~aAi~ahD~~l~~sGITTv~dal~iGd~~-----~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~ 141 (377)
T COG3454 67 PGVRWPPIAAILAHDAQLAASGITTVLDALAIGDVR-----DGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSH 141 (377)
T ss_pred CCCCCCchHHHHHhhHHHHhcChhhHHhhhhcCccc-----CCccchHHHHHHHHHHHHHHhccchhhccceeeeeecCC
Confidence 13321 25788999999987321 1110 011122355566554322 222222332221
Q ss_pred CCChHHHHHHHHhcCceeEeccCC---------------------CCCH-------------------HHHHHHHHHHHH
Q 004611 469 SAKPDELHEIIKAGAMGLKLHEDW---------------------GSTP-------------------AAIDNCLTVAEE 508 (742)
Q Consensus 469 ~~~~~~l~e~i~aGa~glkl~~d~---------------------~~t~-------------------~~l~~~l~~A~e 508 (742)
....+.++++...+...+..-+|. +.++ .....+...|++
T Consensus 142 ~~~l~~~e~~~~~p~v~LiSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~y~~~~r~~i~~~c~~ 221 (377)
T COG3454 142 PATLPLFEDLMDHPRVKLISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSARYSDPNRQAIAALCRE 221 (377)
T ss_pred hhHHHHHHHHhcCCCeeEEEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 122334444444443322221211 1222 333445578889
Q ss_pred cCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEE
Q 004611 509 YDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMV 588 (742)
Q Consensus 509 ~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v 588 (742)
+|+.+..|-|+..+ -|++... .|..+.-|-+. .+..+...+.++- .+|-
T Consensus 222 rgI~lASHDDaT~~--hV~es~~--~Gv~iAEFPtT-------~eAA~asr~~Gm~--------------------VlMG 270 (377)
T COG3454 222 RGIALASHDDATVE--HVAESHG--LGVAIAEFPTT-------VEAAKASRELGMQ--------------------VLMG 270 (377)
T ss_pred cCCceecCCcCcHH--HHHHHHh--cCeeEEeCccH-------HHHHHHHHHhCch--------------------hhcC
Confidence 99999999865333 2333222 23333332211 2222222222210 0111
Q ss_pred eeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCC
Q 004611 589 CHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNL 668 (742)
Q Consensus 589 ~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl 668 (742)
....-.. -.....+++ ..|.+.|+..+++||..+.. ..+.+-.+.. ...++
T Consensus 271 APNivrG----------gSHsGNvsA-~ela~~glLDiLsSDY~P~S--------Ll~A~F~La~----------~~~~~ 321 (377)
T COG3454 271 APNIVRG----------GSHSGNVSA-RELAQHGLLDILSSDYVPAS--------LLHAAFRLAD----------LGSNI 321 (377)
T ss_pred CCceecc----------CCcccchhH-HHHHhCCceeeecccCCcHH--------HHHHHHHHhh----------hhccc
Confidence 1110000 001111222 34566799999999974321 1222222211 12356
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEe
Q 004611 669 RIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAW 725 (742)
Q Consensus 669 ~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~ 725 (742)
++.+|++|.|.|||+++|+.| .|+|++|+.||||.+..+.---.+..||+.|+.|+
T Consensus 322 ~lpqAvalvt~nPA~algl~D-RG~Ia~GlrADlv~v~~~~~vp~ir~vwr~G~rv~ 377 (377)
T COG3454 322 SLPQAVALVTKNPARALGLTD-RGRIAPGLRADLVRVRRDGGVPVIRTVWRAGKRVA 377 (377)
T ss_pred CHHHHHHHhccCHHHhcCCCc-ccccccccccceEEEecCCCCceeeeeeecceecC
Confidence 899999999999999999996 89999999999998876644457899999999764
No 120
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=2.6e-17 Score=176.42 Aligned_cols=87 Identities=33% Similarity=0.531 Sum_probs=71.7
Q ss_pred cccEEEEecEEEcCCC--ceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC--
Q 004611 333 SLDTVITNAVIIDHTG--IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI-- 408 (742)
Q Consensus 333 ~~dlVI~Na~Iid~~g--i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~-- 408 (742)
.+|+||++++|+|++| .+..||+|+||+|++|++..... --..+.||+.|+||+|||||.|+|..
T Consensus 5 ~YD~ViR~g~ifDGtGnp~f~tdvgIrDGvIaav~kg~~dg-----------~~~~eevDaagriVaPGFIDvHtHyD~~ 73 (579)
T COG3653 5 TYDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDG-----------TGCPEEVDAAGRIVAPGFIDVHTHYDAE 73 (579)
T ss_pred eeeEEEeeceEEeCCCCCccccccccccceEEEEecccccc-----------cCCCeeecccCcEecccEEEeeecccce
Confidence 3799999999999887 67889999999999999963310 12348999999999999999999963
Q ss_pred --CchHHHHHHHHHHHHHHhCCCC
Q 004611 409 --CPQLAHDAIASGITTLVGGGTG 430 (742)
Q Consensus 409 --~P~~~~~al~~GvTTl~~gGtg 430 (742)
...+......+|+||++-|.||
T Consensus 74 ~~~d~~l~psv~hGVTTVv~GNCg 97 (579)
T COG3653 74 VLLDPGLRPSVRHGVTTVVLGNCG 97 (579)
T ss_pred eeecCCccchhhcCeeEEEecCcc
Confidence 2233678899999999987775
No 121
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=99.71 E-value=1.5e-16 Score=174.20 Aligned_cols=295 Identities=18% Similarity=0.190 Sum_probs=189.7
Q ss_pred CEEeecceeeccCCCCchH-HHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcCC-CCceEeecCCCCCC
Q 004611 394 FIVTAGAIDCHVHFICPQL-AHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTDD-LPLNFGFTGKGNSA 470 (742)
Q Consensus 394 ~iVtPGfID~HvH~~~P~~-~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~~-~~vn~g~~~~g~~~ 470 (742)
.+|+||+||+|+|+..|.+ ..+.+.+|+..++.||++ .++.++..+.+.....++..++..+. ..++|+++......
T Consensus 2 ~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~~~ 81 (344)
T cd01316 2 TIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKARCDYAFSIGATST 81 (344)
T ss_pred eEEeCCeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeecCC
Confidence 4799999999999998764 478999999999999984 66777766667778888887777665 56889888555444
Q ss_pred ChHHHHHHHHhcCceeEeccCCC-----CCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHH--HHHHHhcCCeEEEEec
Q 004611 471 KPDELHEIIKAGAMGLKLHEDWG-----STPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVE--HTIAAFKGRTIHTYHS 543 (742)
Q Consensus 471 ~~~~l~e~i~aGa~glkl~~d~~-----~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve--~~l~a~~g~~ih~~H~ 543 (742)
..+.+.++.. ...|+|.+.... ............+...+.++..|.+.. .+. -.+....+..+|+.|.
T Consensus 82 ~~~~~~~l~~-~~~g~k~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~e~~----~~~~~l~la~~~g~~lhi~Hi 156 (344)
T cd01316 82 NAATVGELAS-EAVGLKFYLNETFSTLILDKITAWASHFNAWPSTKPIVTHAKSQ----TLAAVLLLASLHNRSIHICHV 156 (344)
T ss_pred CHHHHHHHHh-ccCeEEEEECCCCCCCccchHHHHHHHHHhcccCCCeEEehhhH----HHHHHHHHHHHHCCCEEEEeC
Confidence 4455666543 357888875321 112222233334445678888888642 122 2344556889999999
Q ss_pred ccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHH--HHhhh----hhhhhhhhHHHH
Q 004611 544 EGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDV--AFAES----RIRAETIAAEDI 617 (742)
Q Consensus 544 ~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edi--a~a~~----Rir~~t~a~~~~ 617 (742)
.... +.+.++.++..++ ++++++ ..|||..+. +++ .+++. |-.....++++.
T Consensus 157 St~~---~~~~i~~ak~~g~---------~vt~ev---------~phhL~l~~-~~~~~~~~k~~PPLR~~~dr~aL~~~ 214 (344)
T cd01316 157 SSKE---EINLIRLAKARGL---------KVTCEV---------SPHHLFLSQ-DDLPRGQYEVRPFLPTREDQEALWEN 214 (344)
T ss_pred CCHH---HHHHHHHHHHCCC---------cEEEEe---------chHHeeccH-HHhhcCCceeCCCCcCHHHHHHHHHH
Confidence 9865 4778877777664 344432 347775542 222 12222 223455677777
Q ss_pred HHHCCCeEEEecCCCccCccchhh-hhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccC
Q 004611 618 LHDMGAISIISSDSQAMGRIGEVI-SRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEV 696 (742)
Q Consensus 618 L~d~Gv~~~lgSDs~a~gr~ge~i-~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~ 696 (742)
|. .+.+++||+.+.. ..+.. ...+.....+ +...++.+....+.++++.+++++++.|||+++|+..
T Consensus 215 l~---~id~i~SDHaP~~-~~~K~~~~a~~G~~g~-e~~lpl~~~~v~~~~i~l~~l~~~~s~nPAk~~gl~~------- 282 (344)
T cd01316 215 LD---YIDCFATDHAPHT-LAEKTGNKPPPGFPGV-ETSLPLLLTAVHEGRLTIEDIVDRLHTNPKRIFNLPP------- 282 (344)
T ss_pred Hh---cCCEEEcCCCCCC-HHHhcCCCCCCCcccH-HHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCCC-------
Confidence 74 4889999986543 11111 0112222222 2233333332234579999999999999999999864
Q ss_pred CCcceEEEECCCC-----------------C-----CCCceEEEECCEEEeccC
Q 004611 697 GKLADLVLWKPSF-----------------F-----GAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 697 GK~ADLVV~Dp~~-----------------~-----~~~p~~Vi~~G~iV~~~~ 728 (742)
+ .+||||+|++. | ..+|..||++|++||.+.
T Consensus 283 ~-~~~lvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~ti~rG~~v~~~g 335 (344)
T cd01316 283 Q-SDTYVEVDLDEEWTIPKNPLQSKKGWTPFEGKKVKGKVQRVVLRGETAFIDG 335 (344)
T ss_pred C-CCCEEEEeCCCcEEEChhhccccCCCCCCCCCEEeeEEEEEEECCEEEEECC
Confidence 2 33799999752 1 238899999999999753
No 122
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=99.67 E-value=3.8e-15 Score=158.92 Aligned_cols=103 Identities=21% Similarity=0.289 Sum_probs=75.6
Q ss_pred CCeEEEecCCCccCccchhh-hhhhhhhhhh-----------hhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCC
Q 004611 622 GAISIISSDSQAMGRIGEVI-SRTWQTAHKM-----------KSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQ 689 (742)
Q Consensus 622 Gv~~~lgSDs~a~gr~ge~i-~~~~~~~~~m-----------~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d 689 (742)
--.++++||++.-|.+-..- ..+|....++ .+++..|+. .+.-+++.+...+.-.|||+.+|+++
T Consensus 383 p~kv~lTTD~PNgGpFt~YP~v~awlMS~k~R~~~i~~~hkwa~~rs~l~~---idrE~t~~eia~~TRa~~ak~lgl~e 459 (575)
T COG1229 383 PWKVVLTTDSPNGGPFTRYPEVMAWLMSEKYREEWIEGVHKWAQDRSALAG---IDRELTLYELAIMTRANPAKVLGLSE 459 (575)
T ss_pred CCeEEEeccCCCCCCccccHHHHHHHHhHHHHHHHHhhhhHhhhhhccccc---ccccccHHHHHHHHhcChhhhccccc
Confidence 45789999998766543211 1344444333 333433332 45578999999999999999999999
Q ss_pred CcccccCCCcceEEEECCCCCCC--------------CceEEEECCEEEecc
Q 004611 690 FVGSVEVGKLADLVLWKPSFFGA--------------KPEMVIKGGAIAWAN 727 (742)
Q Consensus 690 ~vGSIe~GK~ADLVV~Dp~~~~~--------------~p~~Vi~~G~iV~~~ 727 (742)
++|+|.+|..||+.|+|.++... +..+|+|+|+||..+
T Consensus 460 ~kGhLg~GadadIaiYdlnP~~vDps~dye~v~kaf~~A~ytlK~GeIvvkd 511 (575)
T COG1229 460 RKGHLGVGADADIAIYDLNPEQVDPSNDYEKVEKAFRKAAYTLKGGEIVVKD 511 (575)
T ss_pred ccCccCcCccCceEEEecChhhcCCcccHHHHHHHHhheeEEecCceEEEec
Confidence 99999999999999999776433 457889999888764
No 123
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=6.2e-15 Score=150.25 Aligned_cols=335 Identities=19% Similarity=0.207 Sum_probs=175.6
Q ss_pred EEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCC---CchH
Q 004611 336 TVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFI---CPQL 412 (742)
Q Consensus 336 lVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~---~P~~ 412 (742)
+-++|++|+-.-++.+.++||+||||..=-+.--. ....+.+.||++|+|+.|||||....-. +-.+
T Consensus 14 lQFtNCrilR~g~l~~edlWVR~GRIldpe~vFFe----------Ert~Ad~riDCgG~IlaPGfIDlQiNGGfGvDFS~ 83 (407)
T KOG3892|consen 14 LQFTNCRILRGGKLLREDLWVRGGRILDPEKVFFE----------ERTVADERIDCGGRILAPGFIDLQINGGFGVDFSQ 83 (407)
T ss_pred eeeeeeEEeeCCceeehheeEeCCeecCcccccce----------eccchhheeccCCeeecCceEEEEecCcccccccc
Confidence 45999999987788899999999999865442110 1124668899999999999999999842 1122
Q ss_pred HHHHHHHHHHH----HHhCCCCCCCCCcccccCCChHHHHHHHHhcC---CCC---ceEeecCCCCCCChHHHHHHHHhc
Q 004611 413 AHDAIASGITT----LVGGGTGPADGTRATTCTPAPSQMKLMLQSTD---DLP---LNFGFTGKGNSAKPDELHEIIKAG 482 (742)
Q Consensus 413 ~~~al~~GvTT----l~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~---~~~---vn~g~~~~g~~~~~~~l~e~i~aG 482 (742)
..+....|+.+ ++..|.++.. .+..+..+..+..++.... ..| -++|++.++..-+.+
T Consensus 84 dte~~~eGvAlVAr~ll~hGvtsf~---Pt~~tsp~~~YHkilP~ip~~~~~p~GaG~LG~HlEGPFIs~~--------- 151 (407)
T KOG3892|consen 84 DTEDVGEGVALVARQLLSHGVTSFC---PTLVTSPPEVYHKILPQIPVKSGGPHGAGVLGLHLEGPFISRE--------- 151 (407)
T ss_pred chhhhhhhHHHHHHHHHhcCCCcCC---CccccCCchhhhhhccccccccCCCCccceeeeeccCCccChh---------
Confidence 33444444444 4456654322 2334445555555443221 111 122333332211111
Q ss_pred CceeEeccCCCCCHHHHHHHH------HHHHHc----CCEEEEEcCCCccchHHHHHHHHhc--CCeEEEEecccCCCCC
Q 004611 483 AMGLKLHEDWGSTPAAIDNCL------TVAEEY----DIQVNIHTDTLNESGFVEHTIAAFK--GRTIHTYHSEGAGGGH 550 (742)
Q Consensus 483 a~glkl~~d~~~t~~~l~~~l------~~A~e~----g~~v~iH~dtlne~g~ve~~l~a~~--g~~ih~~H~~gagggh 550 (742)
.-++.|+..-+.+ .+-.-| ++.+..-+. |-+...+.+..+. |.++...|.....+
T Consensus 152 --------KrG~HPE~~i~s~~~~~~~~l~~tYGsleni~IvTlAP---El~~~~evi~~lv~~gitVslGHS~A~L~-- 218 (407)
T KOG3892|consen 152 --------KRGAHPEAHIRSFEADAFQDLLATYGSLENIRIVTLAP---ELGGAQEVIRALVARGITVSLGHSVADLR-- 218 (407)
T ss_pred --------hcCCCHHHHHhccCccHHHHHHHHhCCccceEEEEecc---cccCcHHHHHHHHhcceEEeeccchhccC--
Confidence 0123333322111 111122 333333221 2222334444433 44555666543332
Q ss_pred CHHHHHHhhhcCcccCCCCCCCCCcchhhhhh-cceEEEeeccCCCchHHHHHhhhhhhhhhh--------------hHH
Q 004611 551 APDIIKVCGVKNVLPSSTNPTRPYTSNTIDEH-LDMLMVCHHLHKDIPEDVAFAESRIRAETI--------------AAE 615 (742)
Q Consensus 551 apdiI~~a~~~~vlpsstnp~~p~t~~tl~e~-ld~l~v~hhl~~~~~edia~a~~Rir~~t~--------------a~~ 615 (742)
+-+....- -.++..| ++.+...||.++.....+. .+|+....+ ++.
T Consensus 219 ~gE~AV~s-----------------Gat~ITHLFNAMlpfHHRDPGlvGLLt--Sd~lp~gr~iyyGiIsDG~HThpaAL 279 (407)
T KOG3892|consen 219 AGEDAVWS-----------------GATFITHLFNAMLPFHHRDPGLVGLLT--SDRLPAGRCIYYGIISDGTHTHPAAL 279 (407)
T ss_pred cHHHHHhc-----------------cchHHHHHHHhccccccCCCceeEEee--cCCCCCCCeEEEEEecCCccCChhHh
Confidence 11111110 1122223 3445556777765433332 112111110 111
Q ss_pred HH-HHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCc----------------ccCCCCcHHHHHHHHH
Q 004611 616 DI-LHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSA----------------ADNDNLRIRRYIAKYT 678 (742)
Q Consensus 616 ~~-L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~----------------~~~~gl~~~~aL~~aT 678 (742)
+. .+..-.-..+.||..+.-.+++-+...-|..-..+.....+.+.. .++.+++.+-+++++|
T Consensus 280 RIAyrthpqGLvLVTDAI~ALGl~~GvH~lGqq~v~Vkgl~A~~aGT~Tl~GSiApMd~CvRhf~kATgCs~e~AleaAt 359 (407)
T KOG3892|consen 280 RIAYRTHPQGLVLVTDAIPALGLGNGVHTLGQQEVEVKGLTAYVAGTKTLSGSIAPMDVCVRHFLKATGCSMESALEAAT 359 (407)
T ss_pred hhhhhcCCCceEEEecchhhcccccccccccceeEEEcceEEEeeccccccccccCcHHHHHHHHHhcCCcHHHHHhhhc
Confidence 11 122222244667755422222222222221111111111111111 0678999999999999
Q ss_pred HHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECCEEEecc
Q 004611 679 INPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWAN 727 (742)
Q Consensus 679 iNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G~iV~~~ 727 (742)
..||..||+++++|.|..|.+||||++|.+ ..+..+|+.|+.||+.
T Consensus 360 lhPAqlLg~ek~KGTLDfG~dADFVllDd~---l~V~aT~isG~~V~~a 405 (407)
T KOG3892|consen 360 LHPAQLLGLEKSKGTLDFGADADFVLLDDS---LHVQATYISGELVWQA 405 (407)
T ss_pred cChHHhhccccccccccccccCceEEEccc---eEEEEEEEccEEEEec
Confidence 999999999999999999999999999987 8899999999999974
No 124
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=99.61 E-value=1.2e-14 Score=158.75 Aligned_cols=268 Identities=16% Similarity=0.099 Sum_probs=160.3
Q ss_pred eecceeeccCCCCchHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHH-HHHhcCCC-CceEeecCC---CCCCC
Q 004611 397 TAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKL-MLQSTDDL-PLNFGFTGK---GNSAK 471 (742)
Q Consensus 397 tPGfID~HvH~~~P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~-~l~a~~~~-~vn~g~~~~---g~~~~ 471 (742)
+||+||.|+|+..| +.+..++.++..||+.....++..+.......+.. ..+..+.. ++++.++.. .....
T Consensus 3 ~Pg~iD~h~h~~~~----~~~~~~~~aa~~gGTtvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (335)
T cd01294 3 IPRPDDMHLHLRDG----AMLKLVLPYTARGFSRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLTENTT 78 (335)
T ss_pred CCCcceeEecCCCc----hHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEeccCCCC
Confidence 79999999999987 67778888888777445555554433334443333 33334444 455443211 12224
Q ss_pred hHHHHHHHHh-cCceeEeccC-------CC-CCHHHHHHHHHHHHHcCCEEEEEcCCCcc--------chHHHH---HHH
Q 004611 472 PDELHEIIKA-GAMGLKLHED-------WG-STPAAIDNCLTVAEEYDIQVNIHTDTLNE--------SGFVEH---TIA 531 (742)
Q Consensus 472 ~~~l~e~i~a-Ga~glkl~~d-------~~-~t~~~l~~~l~~A~e~g~~v~iH~dtlne--------~g~ve~---~l~ 531 (742)
.+.++++++. |+.|+|++.. +. .+...+..+++.+.++|+++.+|++...- ...+.. ...
T Consensus 79 ~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~ 158 (335)
T cd01294 79 PEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQ 158 (335)
T ss_pred HHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHH
Confidence 6788888876 9999999842 12 24578899999999999999999964221 111222 222
Q ss_pred HhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHH------hhh
Q 004611 532 AFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAF------AES 605 (742)
Q Consensus 532 a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~------a~~ 605 (742)
.+.+..+|+.|..... +.+.++.++. + +++++ ..|||..+. +++.. ++.
T Consensus 159 ~~p~~~v~i~Hvst~~---~~~~i~~ak~-~-----------vt~Et---------~ph~L~l~~-~~~~~~~~g~~~k~ 213 (335)
T cd01294 159 RFPKLKIVLEHITTAD---AVEYVKSCNE-N-----------VAATI---------TPHHLLLTR-DDLLGGGLNPHLYC 213 (335)
T ss_pred HcCCCeEEEecccHHH---HHHHHHhCCC-C-----------cEEEE---------chhHheeeH-HHhcCCCCCCCeEE
Confidence 3458899999987532 2344433332 2 33332 347776552 22211 111
Q ss_pred ----hhhhhhhhHHHHHHHCCCeE-EEecCCCccCccchhhhhhhhhhhhhhh--hccccCCCcccCCCCcHHHHHHHHH
Q 004611 606 ----RIRAETIAAEDILHDMGAIS-IISSDSQAMGRIGEVISRTWQTAHKMKS--QRGSFGPSAADNDNLRIRRYIAKYT 678 (742)
Q Consensus 606 ----Rir~~t~a~~~~L~d~Gv~~-~lgSDs~a~gr~ge~i~~~~~~~~~m~~--~~~~L~~~~~~~~gl~~~~aL~~aT 678 (742)
|-+....++++.|.+ |.+. +++||+.+... .+.....| ...+.. ...++.+ .....++++++++++++
T Consensus 214 ~PPlR~~~d~~~L~~~l~~-G~id~~i~SDHaP~~~-~~K~~~~g--~~Gi~~~~~~l~~~~-~~~~~~l~l~~~v~~~s 288 (335)
T cd01294 214 KPVAKRPEDREALRKAATS-GHPKFFLGSDSAPHPK-SNKESSCG--CAGIFSAPIALPYLA-EVFEEHNALDKLEAFAS 288 (335)
T ss_pred cCCCCCHHHHHHHHHHHHc-CCCCeEEECCCCCCCC-ccccCCCC--CccccCHHHHHHHHH-HHHhccCCHHHHHHHHH
Confidence 223456688899987 9999 59999965431 11110111 001100 0111111 11124899999999999
Q ss_pred HHHHHHcCCCCCcccccCCC
Q 004611 679 INPAIANGFSQFVGSVEVGK 698 (742)
Q Consensus 679 iNpA~~lGl~d~vGSIe~GK 698 (742)
.|||+++|+..++|+|.+|.
T Consensus 289 ~nPA~i~gl~~~kg~i~~~~ 308 (335)
T cd01294 289 DNGPNFYGLPPNKKTITLVK 308 (335)
T ss_pred hHHHHHhCCCCCCCeEEEEe
Confidence 99999999977667666665
No 125
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=99.53 E-value=1.8e-14 Score=155.27 Aligned_cols=40 Identities=38% Similarity=0.431 Sum_probs=36.3
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEEC
Q 004611 667 NLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWK 706 (742)
Q Consensus 667 gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~D 706 (742)
++++.++|+|+|.|||+++|+++++|+|++||+|||||||
T Consensus 294 ~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 294 GISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp HSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred cccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 3899999999999999999999889999999999999997
No 126
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=99.51 E-value=4.6e-13 Score=145.35 Aligned_cols=165 Identities=22% Similarity=0.278 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCC
Q 004611 495 TPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPY 574 (742)
Q Consensus 495 t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~ 574 (742)
+++.+..+++.|+++|+++.+|.+...+ .++...+. |..+- -|. ...+.++.+.+.++....+. |
T Consensus 161 ~~~~~~~iv~~A~~~gl~vasH~d~~~~--~v~~a~~~--Gv~~~-E~p------~t~e~a~~a~~~G~~vv~ga---p- 225 (325)
T cd01306 161 APANRSELAALARARGIPLASHDDDTPE--HVAEAHEL--GVVIS-EFP------TTLEAAKAARELGLQTLMGA---P- 225 (325)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCChH--HHHHHHHC--CCeec-cCC------CCHHHHHHHHHCCCEEEecC---c-
Confidence 4688899999999999999999974332 25544443 33221 122 14777777777775311110 0
Q ss_pred cchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhh
Q 004611 575 TSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQ 654 (742)
Q Consensus 575 t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~ 654 (742)
+. + +........+ ...+.+.|+.++++||..+.. .+...+ .+.
T Consensus 226 --------------------n~---l---rg~s~~g~~~-~~~ll~~Gv~~al~SD~~p~s----ll~~~~----~la-- 268 (325)
T cd01306 226 --------------------NV---V---RGGSHSGNVS-ARELAAHGLLDILSSDYVPAS----LLHAAF----RLA-- 268 (325)
T ss_pred --------------------cc---c---cCccccccHh-HHHHHHCCCeEEEEcCCCcHh----HHHHHH----HHH--
Confidence 00 0 0000001112 234556799999999984321 111111 111
Q ss_pred ccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEEECCCCCCCCceEEEECC
Q 004611 655 RGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGG 721 (742)
Q Consensus 655 ~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~Dp~~~~~~p~~Vi~~G 721 (742)
...++++.++|+++|.|||+++|+++ .|+|++||.||||+|+.+.-...+..||++|
T Consensus 269 ---------~~~gl~l~eAl~~aT~nPA~~lGl~d-~G~I~~G~~ADlvvvd~~~~~p~v~~v~~~G 325 (325)
T cd01306 269 ---------DLGGWSLPEAVALVSANPARAVGLTD-RGSIAPGKRADLILVDDMDGVPVVRTVWRGG 325 (325)
T ss_pred ---------HHcCCCHHHHHHHHhHHHHHHcCCCC-CCCcCCCCCCCEEEEeCCCCCCccceEEeCc
Confidence 13478999999999999999999985 6999999999999999875445788899987
No 127
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=99.50 E-value=1.7e-13 Score=152.74 Aligned_cols=184 Identities=25% Similarity=0.318 Sum_probs=105.6
Q ss_pred EeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCCeE--EEEecccCCCCCCHHHHHHhhhcCcc
Q 004611 487 KLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTI--HTYHSEGAGGGHAPDIIKVCGVKNVL 564 (742)
Q Consensus 487 kl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~i--h~~H~~gaggghapdiI~~a~~~~vl 564 (742)
..+..+..+++.+.+.++.|.+.|+++.+|+. ....++..++++..... ...|..-. .++.+....+.++.
T Consensus 215 ~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~---gd~a~~~~l~a~~~~~~~~~i~h~~~~----~~~~~~~~~~l~~~ 287 (404)
T PF07969_consen 215 HISGLPSFDPEELEELVRAAREAGLQVAVHAI---GDRAIDEALDAIEAARARGRIEHAELI----DPDDIERMAELGVT 287 (404)
T ss_dssp EETC--SSSHHHHHHHHHHHHHCT-EEEEEEE---SHHHHHHHHHHHHHHTCCHEEEEHCBC----CHHHHHHHHHHTTE
T ss_pred cccccccccchhHHHHHHHHHhcCCeeEEEEc---CCchHHhHHHHHHhhcccceeeccccC----CHHHHHHHHHhCCc
Confidence 33444456788899999999999999999993 33345555554432211 34444433 57888888877765
Q ss_pred cCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhh---hhhhhhHHHHHHHCCCeEEEecCCCccCccchhh
Q 004611 565 PSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRI---RAETIAAEDILHDMGAISIISSDSQAMGRIGEVI 641 (742)
Q Consensus 565 psstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Ri---r~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i 641 (742)
++.+. +++..... .....++ +.....+...+.+.|+.++++||++.... ..+
T Consensus 288 ~~~~p--------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gsD~p~~~~--~P~ 342 (404)
T PF07969_consen 288 ASVQP--------------------HFLFSWGG---EWYEERLGPERARRIYPIRSLLDAGVRVALGSDAPVSPP--NPF 342 (404)
T ss_dssp EEECC--------------------THHHHETE---ETHHHHHHHHCGGGBTHHHHHHHCTTEEEE--TTTTSSC--CHH
T ss_pred cccCh--------------------hHhhhccc---hhhhhhhhhHHHHHHhHHHHHHhccCceecCcCCccccc--Ccc
Confidence 44431 11100000 0011111 23344667788888999999999864211 111
Q ss_pred hhhhhhhhhhhhhccccC-CCcccCCCCcHHHHHHHHHHHHHHHcCCCCCcccccCCCcceEEE
Q 004611 642 SRTWQTAHKMKSQRGSFG-PSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVL 704 (742)
Q Consensus 642 ~~~~~~~~~m~~~~~~L~-~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV 704 (742)
...|.... ........ ........++++++|+++|+|||+.+|+++++|+|++||.|||||
T Consensus 343 ~~~~~~~~--~~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 343 RGIWAAVT--RQMAGERSGPVLGPEQRLSLEEALRAYTSNPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp HHHHHHHH--HHHCHHTHHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred hhhhhhhc--cccccccccccccccccCCHHHHHHHHhHHHHHHcCCCCCcceECCCCCcCeEC
Confidence 11111111 01110000 000013689999999999999999999999999999999999997
No 128
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=99.42 E-value=8.6e-13 Score=137.88 Aligned_cols=79 Identities=27% Similarity=0.208 Sum_probs=54.6
Q ss_pred hhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCCc
Q 004611 612 IAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFV 691 (742)
Q Consensus 612 ~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~v 691 (742)
......+++.|+.++++||+...... .....+....... ...|++++++++++|+|||++||+++++
T Consensus 226 ~~~~~~l~~~Gv~~~l~sD~~~~~~~--~~~~~~~~~~~~~-----------~~~gl~~~~al~~~T~~pA~~lgl~~~~ 292 (304)
T PF13147_consen 226 RAALRELLEAGVPVALGSDHAPSSTE--GSGDLLHEAMRLA-----------VRAGLSPEEALRAATSNPARILGLDDDK 292 (304)
T ss_dssp HHHHHHHHHTTSSEEEEE-BBTTTTT--CTTTHHHHHHHHH-----------HHTSSTHHHHHHHHTHHHHHHTTBTTTS
T ss_pred hHHHHHHHhCCCeEEEEcCCcccccc--cccccchhhhhHH-----------hhcCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 44556677789999999998643210 0111111111110 1358999999999999999999998889
Q ss_pred ccccCCCcceEE
Q 004611 692 GSVEVGKLADLV 703 (742)
Q Consensus 692 GSIe~GK~ADLV 703 (742)
|+|++||.||||
T Consensus 293 G~i~~G~~ADlv 304 (304)
T PF13147_consen 293 GSIAPGKDADLV 304 (304)
T ss_dssp SSTSTTSB-EEE
T ss_pred ccCCCCCCCCcC
Confidence 999999999997
No 129
>PRK05451 dihydroorotase; Provisional
Probab=99.37 E-value=2.3e-11 Score=133.68 Aligned_cols=267 Identities=15% Similarity=0.123 Sum_probs=159.7
Q ss_pred EEeecceeeccCCCCchHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcC-CC--CceEeecC---CCC
Q 004611 395 IVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTD-DL--PLNFGFTG---KGN 468 (742)
Q Consensus 395 iVtPGfID~HvH~~~P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~-~~--~vn~g~~~---~g~ 468 (742)
+-+|=-||.|+|+.... ....+.+|+...+..++ ..++..+.......+...++... .. .++|.+++ ...
T Consensus 5 ~~~~~~~d~h~hl~~~~-~~~~~~~~~~~~~t~~v---~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~~~~ 80 (345)
T PRK05451 5 LTIRRPDDWHLHLRDGA-MLKAVVPYTARQFGRAI---VMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTD 80 (345)
T ss_pred EEecCcceEEEecCCch-HHHHHHHHHHHhcCEEE---ECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEEeCC
Confidence 45788899999999874 44477788775554333 23333333344555555444332 22 24444221 112
Q ss_pred CCChHHHHHHHHhcCc-eeEeccCC-------C-CCHHHHHHHHHHHHHcCCEEEEEcCCCcc--------chHH----H
Q 004611 469 SAKPDELHEIIKAGAM-GLKLHEDW-------G-STPAAIDNCLTVAEEYDIQVNIHTDTLNE--------SGFV----E 527 (742)
Q Consensus 469 ~~~~~~l~e~i~aGa~-glkl~~d~-------~-~t~~~l~~~l~~A~e~g~~v~iH~dtlne--------~g~v----e 527 (742)
....++++++.+.|+. |+|+|..+ + .++..+..+++.+.++|+++.+|++.... ...+ +
T Consensus 81 ~~~~~El~~~~~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~e~~~~~~~l~ 160 (345)
T PRK05451 81 NTDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLE 160 (345)
T ss_pred CCCHHHHHHHHHCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCcccccccchHHHHHHHHH
Confidence 2346788888888965 99998642 1 26778999999999999999999974111 1111 1
Q ss_pred HHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH------
Q 004611 528 HTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA------ 601 (742)
Q Consensus 528 ~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia------ 601 (742)
.....+.+..+|+.|... ++-+..+++.+. ++++++ ..|||..+. +++.
T Consensus 161 ~lA~~~pg~~lhI~Hlst------~~~~e~i~~a~~---------~it~Et---------~ph~L~l~~-~~~~~~~~~~ 215 (345)
T PRK05451 161 PLRRRFPKLKIVFEHITT------KDAVDYVREAND---------NLAATI---------TPHHLLINR-NDMLVGGIRP 215 (345)
T ss_pred HHHHhcCCCcEEEEecCc------HHHHHHHHhcCC---------CEEEEe---------cHHHHhcCH-HHHhCCCcCC
Confidence 122244488999999865 444444433221 344443 347776552 2222
Q ss_pred Hhh----hhhhhhhhhHHHHHHHCCCeE-EEecCCCccCccchh----hhhhhhhhhhhhhhccccCCCcccCCCCcHHH
Q 004611 602 FAE----SRIRAETIAAEDILHDMGAIS-IISSDSQAMGRIGEV----ISRTWQTAHKMKSQRGSFGPSAADNDNLRIRR 672 (742)
Q Consensus 602 ~a~----~Rir~~t~a~~~~L~d~Gv~~-~lgSDs~a~gr~ge~----i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~ 672 (742)
+++ -|-+.+..++|+.|.+ |.+. +++||+.+...-... ....|.....+.. ...+ + .. +.++++
T Consensus 216 ~~k~~PPLR~~~d~~aLw~~l~~-G~Id~~i~SDHaP~~~~~K~~~~G~~gi~~~~~g~~~-~~~~-~---~~-~~~l~~ 288 (345)
T PRK05451 216 HLYCLPILKRETHRQALREAATS-GNPKFFLGTDSAPHARHAKESACGCAGIFSAPAALEL-YAEV-F---EE-AGALDK 288 (345)
T ss_pred CeEEeCCCCCHHHHHHHHHHHHc-CCCCEEEeCCCCCCChHHhCCCCCCCchhhHHHHHHH-HHHH-H---Hc-CCCHHH
Confidence 111 1334566789999988 9999 899999764321100 1112221111100 0001 1 12 238999
Q ss_pred HHHHHHHHHHHHcCCCCCcccccCC
Q 004611 673 YIAKYTINPAIANGFSQFVGSVEVG 697 (742)
Q Consensus 673 aL~~aTiNpA~~lGl~d~vGSIe~G 697 (742)
++++++.|||+++|+..++|+|.+|
T Consensus 289 ~v~~~s~nPAkifGl~~~KG~i~~~ 313 (345)
T PRK05451 289 LEAFASLNGPDFYGLPRNTDTITLV 313 (345)
T ss_pred HHHHHhHHHHHHhCCCCCCCeEEEE
Confidence 9999999999999999889999888
No 130
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=99.21 E-value=2.4e-10 Score=125.47 Aligned_cols=268 Identities=14% Similarity=0.072 Sum_probs=159.5
Q ss_pred EEeecceeeccCCCCchH---HHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHh-cCCC--CceEeecCCC-
Q 004611 395 IVTAGAIDCHVHFICPQL---AHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQS-TDDL--PLNFGFTGKG- 467 (742)
Q Consensus 395 iVtPGfID~HvH~~~P~~---~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a-~~~~--~vn~g~~~~g- 467 (742)
+.+|---|.|+|+...+. +.-....|+|+++.. ++..+.......+...++. .+.. +++|++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~vv~m-------Pnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~ 74 (341)
T TIGR00856 2 LTIRRPDDWHLHLRDGAMLKAVLPYTSEIFSRAIVM-------PNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLY 74 (341)
T ss_pred ceecCccceeeeccCchHHHHHHHHHHhhcCEEEEC-------CCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEE
Confidence 456777899999987654 345666777777763 2222233344455444443 3333 3567644332
Q ss_pred --CCCChHHHHHHHHh-cCceeEeccCCC--------CCHHHHHHHHHHHHHcCCEEEEEcCCCcc--------chHHHH
Q 004611 468 --NSAKPDELHEIIKA-GAMGLKLHEDWG--------STPAAIDNCLTVAEEYDIQVNIHTDTLNE--------SGFVEH 528 (742)
Q Consensus 468 --~~~~~~~l~e~i~a-Ga~glkl~~d~~--------~t~~~l~~~l~~A~e~g~~v~iH~dtlne--------~g~ve~ 528 (742)
.....++++++++. |+.|+|+|..+. .+...+..+++.|.++|+++.+|++.... .-.+..
T Consensus 75 ~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~ 154 (341)
T TIGR00856 75 LTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIES 154 (341)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHH
Confidence 22246778888777 999999985311 24578999999999999999999975310 111211
Q ss_pred HH----HHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH---
Q 004611 529 TI----AAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA--- 601 (742)
Q Consensus 529 ~l----~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia--- 601 (742)
.+ ..+.+..+|+.|..... +.+.++.++.. ++.++ ..|||..+.. ++.
T Consensus 155 ~i~~lA~~~~~~~~~i~H~st~~---~~~~i~~a~~~------------vt~E~---------~ph~L~l~~~-~~~~~~ 209 (341)
T TIGR00856 155 VLEPLRQRFPALKVVLEHITTKD---AIDYVEDGNNR------------LAATI---------TPQHLMFTRN-DLLGGG 209 (341)
T ss_pred HHHHHHHHccCCeEEEEecCcHH---HHHHHHHcCCC------------EEEEE---------cHHHHhccHH-HHhccC
Confidence 11 23558899999987644 35555554321 23322 3466655432 221
Q ss_pred ---Hhh----hhhhhhhhhHHHHHHHCCCeE-EEecCCCccCccchhhh-hhhhhhhhhhhhccccCCCcccCCCCcHHH
Q 004611 602 ---FAE----SRIRAETIAAEDILHDMGAIS-IISSDSQAMGRIGEVIS-RTWQTAHKMKSQRGSFGPSAADNDNLRIRR 672 (742)
Q Consensus 602 ---~a~----~Rir~~t~a~~~~L~d~Gv~~-~lgSDs~a~gr~ge~i~-~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~ 672 (742)
+++ -|-+....++++.|.+ |.+. +++||+.+... .+... ..+.....+ +...++.+.. ...++++++
T Consensus 210 ~~~~~k~~PPlR~~~d~~aL~~~l~~-G~id~~i~SDHaP~~~-~~K~~~~~~~G~~g~-e~~l~~~~~~-~~~~~~l~~ 285 (341)
T TIGR00856 210 VNPHLYCLPILKRNIHQQALLELAAS-GFPKFFLGTDSAPHAR-HRKESSCGCAGCFSA-PTALPSYAEV-FEEMNALEN 285 (341)
T ss_pred CCCceEEeCCCCCHHHHHHHHHHHHc-CCCCEEEeCCCCCCCh-hHcCCCCCCCCcccH-HHHHHHHHHH-HhcCCCHHH
Confidence 111 1334556788999988 9999 79999976431 11100 011111111 1111111111 123689999
Q ss_pred HHHHHHHHHHHHcCCCCCcccccCCCcceEEEEC
Q 004611 673 YIAKYTINPAIANGFSQFVGSVEVGKLADLVLWK 706 (742)
Q Consensus 673 aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVV~D 706 (742)
++++++.|||+++|+. .| .|||+|++
T Consensus 286 ~v~~~s~nPAk~~gl~--~~------dAdi~~~~ 311 (341)
T TIGR00856 286 LEAFCSDNGPQFYGLP--VN------STKIELVK 311 (341)
T ss_pred HHHHHhHhHHHHhCCC--CC------CceEEEEe
Confidence 9999999999999983 24 89999995
No 131
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.20 E-value=2.3e-10 Score=120.84 Aligned_cols=228 Identities=15% Similarity=0.199 Sum_probs=124.5
Q ss_pred EEeecceeeccCCC------------------Cc-------------hHHHHHHHHHHHHHHhCCCCCCCCCcccccCCC
Q 004611 395 IVTAGAIDCHVHFI------------------CP-------------QLAHDAIASGITTLVGGGTGPADGTRATTCTPA 443 (742)
Q Consensus 395 iVtPGfID~HvH~~------------------~P-------------~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~ 443 (742)
+|+|||||+|+|+. ++ +........++..++..|++-+. .....+
T Consensus 1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~----d~~~~~ 76 (263)
T cd01305 1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFA----DFREGG 76 (263)
T ss_pred CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEE----EccCcc
Confidence 58999999999961 10 11123344445555666663110 011223
Q ss_pred hHHHHHHHHhcCCCCceE-eecCCCCCCChHHHHHHHHhcCceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEcCC-Cc
Q 004611 444 PSQMKLMLQSTDDLPLNF-GFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDT-LN 521 (742)
Q Consensus 444 ~~~i~~~l~a~~~~~vn~-g~~~~g~~~~~~~l~e~i~aGa~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~dt-ln 521 (742)
....+...++.+..+++. ++.+... ..+..++ +..+..++..+..+.++ ++.+++.|+++|+++.+|+.. ..
T Consensus 77 ~~~~~a~~~a~~~~g~r~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~---l~~~~~~A~~~g~~v~~H~~e~~~ 150 (263)
T cd01305 77 VEGIELLRRALGKLPVPFEVILGRPT--EPDDPEI-LLEVADGLGLSSANDVD---LEDILELLRRRGKLFAIHASETRE 150 (263)
T ss_pred hhHHHHHHHHHHhcCCCceEEeccCC--cchHHHH-HHhhcccccCCCCCccC---HHHHHHHHHHCCCeeEEecCCCCC
Confidence 445666666666666552 2222211 1222232 22344456566555555 899999999999999999942 22
Q ss_pred c--chHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHH
Q 004611 522 E--SGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPED 599 (742)
Q Consensus 522 e--~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~ed 599 (742)
+ ...++...+.......|..|. .++.++..++.++..+.+ |+ .+.
T Consensus 151 ~~g~~~i~~~~~~~~~~i~H~~~l-------~~~~~~~la~~g~~v~~~-P~--------------------sn~----- 197 (263)
T cd01305 151 SVGMTDIERALDLEPDLLVHGTHL-------TDEDLELVRENGVPVVLC-PR--------------------SNL----- 197 (263)
T ss_pred CCCchhHHHHHhCCCCEEEEcCCC-------CHHHHHHHHHcCCcEEEC-hh--------------------hHH-----
Confidence 1 123666666533333444443 467788888887642222 10 000
Q ss_pred HHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHH
Q 004611 600 VAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTI 679 (742)
Q Consensus 600 ia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTi 679 (742)
++ ....++...+.+.|+.+++|||+...+. . ..|+.......... + ...+++.++|+++|+
T Consensus 198 ------~l-~~g~~p~~~l~~~Gv~v~lGtD~~~~~~-~----~~~~~~~~~~~~~~-~------~~~~~~~~~l~~aT~ 258 (263)
T cd01305 198 ------YF-GVGIPPVAELLKLGIKVLLGTDNVMVNE-P----DMWAEMEFLAKYSR-L------QGYLSPLEILRMATV 258 (263)
T ss_pred ------Hh-CCCCCCHHHHHHCCCcEEEECCCCccCC-C----CHHHHHHHHHHHhc-c------cccCCHHHHHHHHhh
Confidence 00 1123445677788999999999754321 1 12222211111000 0 115699999999999
Q ss_pred HHHHH
Q 004611 680 NPAIA 684 (742)
Q Consensus 680 NpA~~ 684 (742)
|+|++
T Consensus 259 ~gA~~ 263 (263)
T cd01305 259 NAAEF 263 (263)
T ss_pred ccccC
Confidence 99973
No 132
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.14 E-value=1.1e-09 Score=113.23 Aligned_cols=194 Identities=16% Similarity=0.147 Sum_probs=113.6
Q ss_pred hHHHHHHHHhcCCC-CceEeecCCCCC-CC------hHHHHHHH----HhcCceeEeccCCCC---CHHHHHHHHHHHHH
Q 004611 444 PSQMKLMLQSTDDL-PLNFGFTGKGNS-AK------PDELHEII----KAGAMGLKLHEDWGS---TPAAIDNCLTVAEE 508 (742)
Q Consensus 444 ~~~i~~~l~a~~~~-~vn~g~~~~g~~-~~------~~~l~e~i----~aGa~glkl~~d~~~---t~~~l~~~l~~A~e 508 (742)
.+..+.+.+..... ++++.+...... +. .+...+.+ +.|+.|++++..+.. +++.+..+++.|++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~ 144 (275)
T cd01292 65 KAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARK 144 (275)
T ss_pred chHHHHHHHHHHHhcCeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHH
Confidence 35666666766665 555544222211 11 22222222 247899999988875 88999999999999
Q ss_pred cCCEEEEEcCCCccc-hHHHHHHHHhc-CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceE
Q 004611 509 YDIQVNIHTDTLNES-GFVEHTIAAFK-GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDML 586 (742)
Q Consensus 509 ~g~~v~iH~dtlne~-g~ve~~l~a~~-g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l 586 (742)
+++++.+|+...... ..++..++... +..+.+.|.... .++.++.....++..+.++
T Consensus 145 ~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~g~~~~~~~----------------- 203 (275)
T cd01292 145 LGLPVVIHAGELPDPTRALEDLVALLRLGGRVVIGHVSHL----DPELLELLKEAGVSLEVCP----------------- 203 (275)
T ss_pred cCCeEEEeeCCcccCccCHHHHHHHHhcCCCEEEECCccC----CHHHHHHHHHcCCeEEECC-----------------
Confidence 999999999533221 12445554433 567778887654 4778888777776433321
Q ss_pred EEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCC
Q 004611 587 MVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADND 666 (742)
Q Consensus 587 ~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~ 666 (742)
++..... ...........+.+.|..+++|||++.++.. . ..+.....+... ...
T Consensus 204 ---~~~~~~~----------~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~-~---~~~~~~~~~~~~---------~~~ 257 (275)
T cd01292 204 ---LSNYLLG----------RDGEGAEALRRLLELGIRVTLGTDGPPHPLG-T---DLLALLRLLLKV---------LRL 257 (275)
T ss_pred ---ccccccc----------CCcCCcccHHHHHHCCCcEEEecCCCCCCCC-C---CHHHHHHHHHHH---------Hhc
Confidence 1110000 0112233445667789999999998754210 1 111111111110 012
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 004611 667 NLRIRRYIAKYTINPAIA 684 (742)
Q Consensus 667 gl~~~~aL~~aTiNpA~~ 684 (742)
+++..++++++|.|||++
T Consensus 258 ~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 258 GLSLEEALRLATINPARA 275 (275)
T ss_pred CCCHHHHHHHHhccccCC
Confidence 479999999999999973
No 133
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.07 E-value=8.8e-11 Score=98.64 Aligned_cols=59 Identities=36% Similarity=0.423 Sum_probs=42.3
Q ss_pred EEEECCEEEEEecCCCCCcccCCCCccccCCCceEEecCCCEEeecceeeccCCCC--------chHHHHHHHHHHHH
Q 004611 354 IGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFIC--------PQLAHDAIASGITT 423 (742)
Q Consensus 354 I~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvH~~~--------P~~~~~al~~GvTT 423 (742)
|+|+||||++|++.... ...+.++||++|++|+|||||+|+|+.. ......+++.|+||
T Consensus 1 V~I~~g~I~~v~~~~~~-----------~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvTT 67 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSEL-----------PADAAEVIDAKGKYVMPGFIDMHTHLGEPGWQSLDPETEAAAALAGGVTT 67 (68)
T ss_dssp EEEETTEEEEEESSCCT-----------TSTCCEEEEETTCEEEE-EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEEE
T ss_pred CEEECCEEEEeCCCCCC-----------CCCCCEEEECCCCEEeCCeEeeeeccccccccccchhhHHHHHHCcceee
Confidence 78999999999654332 1357789999999999999999999542 22345566677665
No 134
>PLN02599 dihydroorotase
Probab=99.07 E-value=2e-09 Score=118.88 Aligned_cols=263 Identities=14% Similarity=0.124 Sum_probs=157.2
Q ss_pred EEeecceeeccCCCCchHHHHHHHHHHHHHHhCCCC-CCCCCcccccCCChHHHHHHHHhcC-C--CCceEeecCCC--C
Q 004611 395 IVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTG-PADGTRATTCTPAPSQMKLMLQSTD-D--LPLNFGFTGKG--N 468 (742)
Q Consensus 395 iVtPGfID~HvH~~~P~~~~~al~~GvTTl~~gGtg-p~~~~~~~~~t~~~~~i~~~l~a~~-~--~~vn~g~~~~g--~ 468 (742)
+.+|---|.|+|+...+.+ +. ++-...||++ ....+|..+.......+....+... . ..++|++++.. .
T Consensus 23 ~~~~~~~d~h~hlr~~~~~----~~-~~~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l~lt 97 (364)
T PLN02599 23 LTITRPDDWHLHLRDGAKL----AA-VVPHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMTLYLT 97 (364)
T ss_pred EEecCCcceeeEccCcHHH----Hh-hhHHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEEecC
Confidence 5689999999999986532 22 2233334443 3345555555566666665555443 3 34677765322 1
Q ss_pred -CCChHHHHHHHHhcCc-eeEeccC-------CCCC-HHHHHHHHHHHHHcCCEEEEEcCCCc--------cchHHHH--
Q 004611 469 -SAKPDELHEIIKAGAM-GLKLHED-------WGST-PAAIDNCLTVAEEYDIQVNIHTDTLN--------ESGFVEH-- 528 (742)
Q Consensus 469 -~~~~~~l~e~i~aGa~-glkl~~d-------~~~t-~~~l~~~l~~A~e~g~~v~iH~dtln--------e~g~ve~-- 528 (742)
....+++.++.+.|+. |+|+|.. .+.+ .+.+..+++.+.+.|+++.+|++... |..+++.
T Consensus 98 ~~~~l~Ei~~~~~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l 177 (364)
T PLN02599 98 DNTTPEEIKAAKASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTIL 177 (364)
T ss_pred CCCCHHHHHHHHHCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHH
Confidence 1346778888888999 9998752 1222 58899999999999999999997521 2222322
Q ss_pred --HHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHH---H-
Q 004611 529 --TIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVA---F- 602 (742)
Q Consensus 529 --~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia---~- 602 (742)
.+..+.+..+|+.|..... +.+.++.++..++ +.+ ...|||..+. +++. +
T Consensus 178 ~~~la~~~g~kI~i~HiSt~~---~ve~v~~ak~~~v-----------tae---------~tpHhL~l~~-~~~~~~~~~ 233 (364)
T PLN02599 178 APLVQKLPQLKIVMEHITTMD---AVEFVESCGDGNV-----------AAT---------VTPQHLLLNR-NALFQGGLQ 233 (364)
T ss_pred HHHHHhccCCeEEEEecChHH---HHHHHHhccCCCE-----------EEE---------ecHHHHhcCH-HHHhccCCC
Confidence 2456778899999998644 3555655442122 222 2357776553 2221 0
Q ss_pred --hhh----hhhhhhhhHHHHHHHCCCe-EEEecCCCccCccchhh-----hhhhhhhhhhhhhccccCCCcccCCCCcH
Q 004611 603 --AES----RIRAETIAAEDILHDMGAI-SIISSDSQAMGRIGEVI-----SRTWQTAHKMKSQRGSFGPSAADNDNLRI 670 (742)
Q Consensus 603 --a~~----Rir~~t~a~~~~L~d~Gv~-~~lgSDs~a~gr~ge~i-----~~~~~~~~~m~~~~~~L~~~~~~~~gl~~ 670 (742)
++. |-.....++++.+.+ |.+ .+++||+.+... .+.- .-.|..... .++........+ ++
T Consensus 234 ~~~k~~PPlR~~~dr~aL~~al~~-G~i~~~i~SDHaPh~~-~~K~~~~g~~Gi~~~~~~-----l~~l~~~~~~~g-~l 305 (364)
T PLN02599 234 PHNYCLPVLKREIHREALVKAATS-GSKKFFLGTDSAPHPK-RAKEASCGCAGIYSAPVA-----LSLYAKAFEEAG-AL 305 (364)
T ss_pred CCeEEECCCCCHHHHHHHHHHHHc-CCCCEEEecCCCCCCh-HHhcCCCCCCCcccHHHH-----HHHHHHHHHhcC-CH
Confidence 111 234556788999888 885 899999865432 1100 001110000 011000001224 89
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccc
Q 004611 671 RRYIAKYTINPAIANGFSQFVGSV 694 (742)
Q Consensus 671 ~~aL~~aTiNpA~~lGl~d~vGSI 694 (742)
++++++++.|||+++|+....|+|
T Consensus 306 ~~l~~~~S~npA~~~gL~~~kg~i 329 (364)
T PLN02599 306 DKLEAFTSFNGPDFYGLPRNTSTI 329 (364)
T ss_pred HHHHHHHhHHHHHHhCCCCCCCeE
Confidence 999999999999999996456653
No 135
>PRK06886 hypothetical protein; Validated
Probab=98.61 E-value=2.2e-06 Score=93.77 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcCCC-ccc-hHHHHH----HHH-hcCCeEEEEecccCCC---CCCHHHHHHhhhc
Q 004611 492 WGSTPAAIDNCLTVAEEYDIQVNIHTDTL-NES-GFVEHT----IAA-FKGRTIHTYHSEGAGG---GHAPDIIKVCGVK 561 (742)
Q Consensus 492 ~~~t~~~l~~~l~~A~e~g~~v~iH~dtl-ne~-g~ve~~----l~a-~~g~~ih~~H~~gagg---ghapdiI~~a~~~ 561 (742)
+..+.+.++.++++|+++|+++.+|++.. .+. ..++.. ++. +.+ .+...|+...+. .....+++..++.
T Consensus 157 ~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~g-rV~~sH~~~L~~~~~~~~~~~i~~La~a 235 (329)
T PRK06886 157 YGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKEKETEQLCDKTIEHGMQG-RVVAIHGISIGAHSKEYRYRLYQKMREA 235 (329)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEeECCCCchhHHHHHHHHHHHHHcCCCC-CEEEEEeccccCcChhhHHHHHHHHHHc
Confidence 35678999999999999999999999532 221 123322 222 234 466667665542 1123456777766
Q ss_pred CcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCc--cCcc--
Q 004611 562 NVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQA--MGRI-- 637 (742)
Q Consensus 562 ~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a--~gr~-- 637 (742)
++..+++ |.. |. +++. .++ .-.....+++...|.+.|+.+++|||+.. +..+
T Consensus 236 gi~Vv~~-P~s----nl---~l~~-----------~~~-----~~p~~rGv~pv~eL~~aGV~V~lGtDnv~D~~~p~g~ 291 (329)
T PRK06886 236 DMMVIAC-PMA----WI---DSNR-----------KED-----LMPFHNALTPADEMIPEGITVALGTDNICDYMVPLCE 291 (329)
T ss_pred CCeEEEC-chh----hh---hhcc-----------ccc-----cCcCCCCCCCHHHHHHCCCeEEEecCCCcccCCCCCC
Confidence 6532222 110 00 0000 000 00012345677788999999999999753 1111
Q ss_pred chhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 638 GEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 638 ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
++.+....... . . ..-.++.+++.|+|+|+|+++|++
T Consensus 292 ~Dmle~~~l~~----~-~---------~~~~~~~~~l~maT~~gAraLgl~ 328 (329)
T PRK06886 292 GDMWQELSLLA----A-G---------CRFYDLDEMVNIASINGRKVLGLE 328 (329)
T ss_pred CCHHHHHHHHH----H-H---------cCCCCHHHHHHHHhhhHHHHhCCC
Confidence 22222211111 0 0 111268999999999999999985
No 136
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=97.87 E-value=0.00077 Score=73.60 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=90.6
Q ss_pred CceeEeccC-CCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHH-hcCCeEEEEecccCCCCCCHHHHHHhhh
Q 004611 483 AMGLKLHED-WGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAA-FKGRTIHTYHSEGAGGGHAPDIIKVCGV 560 (742)
Q Consensus 483 a~glkl~~d-~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a-~~g~~ih~~H~~gaggghapdiI~~a~~ 560 (742)
..|+.+... +..+++.+..+++.|+++|+++.+|+......+.+...+.. ...+..|..+... .++.++.+++
T Consensus 157 vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg~~l~~-----~~~~i~~l~~ 231 (324)
T TIGR01430 157 IVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHGVRALE-----DPELLKRLAQ 231 (324)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchhhhhcc-----CHHHHHHHHH
Confidence 455555532 45668999999999999999999999422111123444432 2234444444321 4678888888
Q ss_pred cCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchh
Q 004611 561 KNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEV 640 (742)
Q Consensus 561 ~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~ 640 (742)
.++.. ..+|+..+.... +..-...+...|.+.|+.+++|||++.+. +.
T Consensus 232 ~gi~v-~~cP~Sn~~l~~----------------------------~~~~~~~pi~~l~~~Gv~v~igTD~~~~~--~~- 279 (324)
T TIGR01430 232 ENITL-EVCPTSNVALGV----------------------------VKSLAEHPLRRFLEAGVKVTLNSDDPAYF--GS- 279 (324)
T ss_pred cCceE-EECCcccccccc----------------------------cCCcccChHHHHHHCCCEEEECCCCCccc--CC-
Confidence 77531 112221111100 00012345566788899999999986442 11
Q ss_pred hhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCCC
Q 004611 641 ISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQ 689 (742)
Q Consensus 641 i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d 689 (742)
..+.....+.. ..++++.+ |.++|.|+++..-+++
T Consensus 280 --~l~~e~~~a~~-----------~~~l~~~e-l~~~~~na~~~~f~~~ 314 (324)
T TIGR01430 280 --YLTEEYEIAAK-----------HAGLTEEE-LKQLARNALEGSFLSD 314 (324)
T ss_pred --CHHHHHHHHHH-----------HcCCCHHH-HHHHHHHHHHHhCCCH
Confidence 11222222211 34899999 8899999999887653
No 137
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=97.72 E-value=0.001 Score=69.07 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhc-CCeEEEEecccCCCCCCHHHHHHhhhcCcc
Q 004611 496 PAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFK-GRTIHTYHSEGAGGGHAPDIIKVCGVKNVL 564 (742)
Q Consensus 496 ~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~-g~~ih~~H~~gaggghapdiI~~a~~~~vl 564 (742)
...+...++.|.++++++.+|+... ...+.+.+..+. ...+ +.|..+ + .++.+..+...|+.
T Consensus 107 ~~~~~~~~~~a~e~~~pv~iH~~~~--~~~~~~l~~~~~~~~~~-i~H~~~-~---~~~~~~~~~~~g~~ 169 (251)
T cd01310 107 KEVFRAQLELAKELNLPVVIHSRDA--HEDVLEILKEYGPPKRG-VFHCFS-G---SAEEAKELLDLGFY 169 (251)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCc--hHHHHHHHHhcCCCCCE-EEEccC-C---CHHHHHHHHHcCCE
Confidence 4667889999999999999998532 223455555554 3333 335433 1 35566555555653
No 138
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=97.61 E-value=0.0017 Score=67.48 Aligned_cols=146 Identities=20% Similarity=0.208 Sum_probs=71.6
Q ss_pred ceeeccCCCCch-------HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCC---ceEeecCCCCC
Q 004611 400 AIDCHVHFICPQ-------LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLP---LNFGFTGKGNS 469 (742)
Q Consensus 400 fID~HvH~~~P~-------~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~---vn~g~~~~g~~ 469 (742)
|||+|+|+.+.. ...++...|+++++..++ .+...+.+.+..+..+ ..+|+++....
T Consensus 1 ~iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~-------------~~~~~~~~~~~~~~~~~i~~~~GihP~~~~ 67 (252)
T TIGR00010 1 LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGT-------------DLEDFLRALELAEKYPNVYAAVGVHPLDVD 67 (252)
T ss_pred CEEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecC-------------CHHHHHHHHHHHHHCCCEEEEEEeCcchhh
Confidence 699999986321 233444555555553221 1244455555455555 22355543222
Q ss_pred C-Ch---HHHHHHHH-hcCceeE-eccCCCC-------CHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCC
Q 004611 470 A-KP---DELHEIIK-AGAMGLK-LHEDWGS-------TPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGR 536 (742)
Q Consensus 470 ~-~~---~~l~e~i~-aGa~glk-l~~d~~~-------t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~ 536 (742)
. .. +.+++.++ .+..++. +..++.. ..+.+...++.|.+++++|.+|+... ...+.+.+..+...
T Consensus 68 ~~~~~~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~--~~~~~~~l~~~~~~ 145 (252)
T TIGR00010 68 DDTKEDIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDA--EEDVLDILREEKPK 145 (252)
T ss_pred cCCHHHHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCc--cHHHHHHHHhcCCC
Confidence 2 12 33333332 1222332 2233321 13667788999999999999999531 12234444443212
Q ss_pred eEEEEecccCCCCCCHHHHHHhhhcCcc
Q 004611 537 TIHTYHSEGAGGGHAPDIIKVCGVKNVL 564 (742)
Q Consensus 537 ~ih~~H~~gaggghapdiI~~a~~~~vl 564 (742)
..-+.|... + .++.+......|+.
T Consensus 146 ~~~i~H~~~-~---~~~~~~~~~~~g~~ 169 (252)
T TIGR00010 146 VGGVLHCFT-G---DAELAKKLLDLGFY 169 (252)
T ss_pred CCEEEEccC-C---CHHHHHHHHHCCCe
Confidence 122234331 1 35666666555654
No 139
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=97.54 E-value=0.0042 Score=67.72 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=89.6
Q ss_pred CceeEeccC-CCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHH-HhcCCeEEEEecccCCCCCCHHHHHHhhh
Q 004611 483 AMGLKLHED-WGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIA-AFKGRTIHTYHSEGAGGGHAPDIIKVCGV 560 (742)
Q Consensus 483 a~glkl~~d-~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~-a~~g~~ih~~H~~gaggghapdiI~~a~~ 560 (742)
..|+.+... ...+++.+..+++.|+++|+++.+|+........+...+. ....+..|..+.. ..++.++.+++
T Consensus 158 vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~i~H~~~l~-----~~~~~~~~l~~ 232 (325)
T cd01320 158 VVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAERIGHGIRAI-----EDPELVKRLAE 232 (325)
T ss_pred EEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcccchhhccC-----ccHHHHHHHHH
Confidence 456655432 2347889999999999999999999942222223444454 2233444544432 14678888888
Q ss_pred cCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchh
Q 004611 561 KNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEV 640 (742)
Q Consensus 561 ~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~ 640 (742)
.++..+ .+|+..+.... .......+...+.+.|+.+++|||++.... .
T Consensus 233 ~gi~v~-~~P~sn~~l~~----------------------------~~~~~~~p~~~l~~~Gv~v~lgTD~~~~~~-~-- 280 (325)
T cd01320 233 RNIPLE-VCPTSNVQTGA----------------------------VKSLAEHPLRELLDAGVKVTINTDDPTVFG-T-- 280 (325)
T ss_pred cCCeEE-ECCCccccccc----------------------------cCCcccChHHHHHHCCCEEEECCCCCcccC-C--
Confidence 776322 22322211100 000123456677888999999999864331 1
Q ss_pred hhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 641 ISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 641 i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
..+.....+.. ..++++.+ |..+|.|+++...++
T Consensus 281 --~~~~e~~~~~~-----------~~~l~~~e-l~~~~~na~~~~f~~ 314 (325)
T cd01320 281 --YLTDEYELLAE-----------AFGLTEEE-LKKLARNAVEASFLS 314 (325)
T ss_pred --CHHHHHHHHHH-----------HcCCCHHH-HHHHHHHHHHHhCCC
Confidence 11111111111 23788988 666899999987765
No 140
>PRK10812 putative DNAse; Provisional
Probab=97.34 E-value=0.0032 Score=67.10 Aligned_cols=221 Identities=14% Similarity=0.109 Sum_probs=111.6
Q ss_pred ceeeccCCCCch----------HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCC---CceEeecCC
Q 004611 400 AIDCHVHFICPQ----------LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDL---PLNFGFTGK 466 (742)
Q Consensus 400 fID~HvH~~~P~----------~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~---~vn~g~~~~ 466 (742)
+||+|+|+..+. ...++...|+..++.-|+ .+......++.++.. ...+|+++.
T Consensus 3 ~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~-------------~~~~~~~~~~l~~~~~~v~~~~GiHP~ 69 (265)
T PRK10812 3 LVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVAT-------------TLPGYRHMRDLVGERDNVVFSCGVHPL 69 (265)
T ss_pred eEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCC-------------CHHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence 799999986321 133444444444443222 344444455544433 345788875
Q ss_pred CCC--CChHHHHHHHHh------cCceeEeccCCC---CCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHh--
Q 004611 467 GNS--AKPDELHEIIKA------GAMGLKLHEDWG---STPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAF-- 533 (742)
Q Consensus 467 g~~--~~~~~l~e~i~a------Ga~glkl~~d~~---~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~-- 533 (742)
... ...+.+.++++. |.+|+..+.+.. .-.+.+...+++|.++++++.+|+....+ . +-+.+...
T Consensus 70 ~~~~~~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~-~-~l~iL~~~~~ 147 (265)
T PRK10812 70 NQDEPYDVEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDARA-D-TLAILREEKV 147 (265)
T ss_pred CCCChhHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchH-H-HHHHHHhhcC
Confidence 432 223444544432 344555432111 12355678889999999999999953221 1 22233322
Q ss_pred c--CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhh
Q 004611 534 K--GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAET 611 (742)
Q Consensus 534 ~--g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t 611 (742)
. +..+|.| + | ..+.++.+...+...+.+. .+ .....+
T Consensus 148 ~~~~~v~H~f---s-G---~~~~a~~~~~~G~~is~~g------------------~~---t~~~~~------------- 186 (265)
T PRK10812 148 TDCGGVLHCF---T-E---DRETAGKLLDLGFYISFSG------------------IV---TFRNAE------------- 186 (265)
T ss_pred CCCCEEEEee---c-C---CHHHHHHHHHCCCEEEECe------------------ee---ecCccH-------------
Confidence 1 2234444 2 1 4677777766665433220 00 000000
Q ss_pred hhHHHHHHHCC-CeEEEecCCCccCcc---ch--hhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHc
Q 004611 612 IAAEDILHDMG-AISIISSDSQAMGRI---GE--VISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIAN 685 (742)
Q Consensus 612 ~a~~~~L~d~G-v~~~lgSDs~a~gr~---ge--~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~l 685 (742)
...+.+.... -.+.+.||++.+... |. ...........+.. -.|++.++..+..+.|+.+++
T Consensus 187 -~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia~-----------l~g~~~eei~~~~~~N~~~lf 254 (265)
T PRK10812 187 -QLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAV-----------LKGVSVEELAQVTTDNFARLF 254 (265)
T ss_pred -HHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHHH-----------HhCCCHHHHHHHHHHHHHHHH
Confidence 0111222211 147889998754321 10 01111111222222 238999999999999999999
Q ss_pred CCC
Q 004611 686 GFS 688 (742)
Q Consensus 686 Gl~ 688 (742)
+++
T Consensus 255 ~~~ 257 (265)
T PRK10812 255 HID 257 (265)
T ss_pred CCC
Confidence 985
No 141
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.21 E-value=0.011 Score=62.86 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=77.3
Q ss_pred eecceeeccCCCCchH-------HHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCC---ceEeecCC
Q 004611 397 TAGAIDCHVHFICPQL-------AHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLP---LNFGFTGK 466 (742)
Q Consensus 397 tPGfID~HvH~~~P~~-------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~---vn~g~~~~ 466 (742)
++.+||+|+|+....+ ..++...|+..++.-|+ ++......++-.+..+ ..+|+++.
T Consensus 2 ~~~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~-------------~~~~~~~~~~l~~~~~~v~~~~GiHP~ 68 (258)
T PRK11449 2 ICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT-------------EAENFARVLALAERYQPLYAALGLHPG 68 (258)
T ss_pred CceEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeC-------------CHHHHHHHHHHHHhCCCEEEEEeeCcC
Confidence 4668999999864321 33344444444433222 3344444444444333 44677775
Q ss_pred CCCC----ChHHHHHHHH--------hcCceeEeccCCC---CCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHH
Q 004611 467 GNSA----KPDELHEIIK--------AGAMGLKLHEDWG---STPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIA 531 (742)
Q Consensus 467 g~~~----~~~~l~e~i~--------aGa~glkl~~d~~---~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~ 531 (742)
.... ..+.+.++++ -|.+|+..+.... .-.+.+..-+++|.+++.+|.+|+.... +-+-+.+.
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~--~~~~~il~ 146 (258)
T PRK11449 69 MLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--DKLAMHLK 146 (258)
T ss_pred ccccCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc--HHHHHHHH
Confidence 4322 1333444442 1445665432211 1235667888999999999999995322 12333444
Q ss_pred HhcCCeEEEEecccCCCCCCHHHHHHhhhcCcc
Q 004611 532 AFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVL 564 (742)
Q Consensus 532 a~~g~~ih~~H~~gaggghapdiI~~a~~~~vl 564 (742)
...-..--++|+.+. ..+.++.+-..+..
T Consensus 147 ~~~~~~~~i~H~fsG----~~~~a~~~l~~G~~ 175 (258)
T PRK11449 147 RHDLPRTGVVHGFSG----SLQQAERFVQLGYK 175 (258)
T ss_pred hcCCCCCeEEEcCCC----CHHHHHHHHHCCCE
Confidence 322111124555542 46677766665543
No 142
>PRK10425 DNase TatD; Provisional
Probab=97.16 E-value=0.012 Score=62.36 Aligned_cols=153 Identities=12% Similarity=0.184 Sum_probs=75.2
Q ss_pred ceeeccCCCCchHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCC---ceEeecCCCCCCC----h
Q 004611 400 AIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLP---LNFGFTGKGNSAK----P 472 (742)
Q Consensus 400 fID~HvH~~~P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~---vn~g~~~~g~~~~----~ 472 (742)
+||+|+|+..+++ ...+..=+..+...|+.. ...+...+......++..+..+ ..+|+++...... .
T Consensus 1 ~iDtH~HL~~~~~-~~d~~~vl~~a~~~gv~~-----~i~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~~~~~ 74 (258)
T PRK10425 1 MFDIGVNLTSSQF-AKDRDDVVARAFAAGVNG-----MLITGTNLRESQQAQKLARQYPSCWSTAGVHPHDSSQWQAATE 74 (258)
T ss_pred CEEeeeCcCChhh-hccHHHHHHHHHHCCCCE-----EEEeCCCHHHHHHHHHHHHhCCCEEEEEEeCcCccccCCHHHH
Confidence 6999999865443 122222233333333210 0111123444444555444433 4568887543221 2
Q ss_pred HHHHHHHHh------cCceeEeccCCCC---CHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHh-cCCeEEEEe
Q 004611 473 DELHEIIKA------GAMGLKLHEDWGS---TPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAF-KGRTIHTYH 542 (742)
Q Consensus 473 ~~l~e~i~a------Ga~glkl~~d~~~---t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~-~g~~ih~~H 542 (742)
+.+.++++. |.+|+..+.+... -.+.+..-+++|.+++.++.+|+.... .-+-+.+... ....--+.|
T Consensus 75 ~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~--~~~l~iL~~~~~~~~~~i~H 152 (258)
T PRK10425 75 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAH--ERFMALLEPWLDKLPGAVLH 152 (258)
T ss_pred HHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCch--HHHHHHHHHhccCCCCeEEE
Confidence 334444432 5567765432211 124556778999999999999995211 1122333332 111112345
Q ss_pred cccCCCCCCHHHHHHhhhcCcc
Q 004611 543 SEGAGGGHAPDIIKVCGVKNVL 564 (742)
Q Consensus 543 ~~gaggghapdiI~~a~~~~vl 564 (742)
+.+. ..+.++.+-..+..
T Consensus 153 ~fsG----~~~~~~~~l~~G~~ 170 (258)
T PRK10425 153 CFTG----TREEMQACLARGLY 170 (258)
T ss_pred ecCC----CHHHHHHHHHCCCE
Confidence 5442 47777777666654
No 143
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0097 Score=63.01 Aligned_cols=146 Identities=19% Similarity=0.217 Sum_probs=80.3
Q ss_pred ceeeccCCCCchH-------HHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCC---ceEeecCCCC-
Q 004611 400 AIDCHVHFICPQL-------AHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLP---LNFGFTGKGN- 468 (742)
Q Consensus 400 fID~HvH~~~P~~-------~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~---vn~g~~~~g~- 468 (742)
+||+|+|+..+.+ ...+...|++-++.-|+ ........++.++..+ ..+|+++...
T Consensus 3 liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~-------------~~~~~~~~~~la~~y~~v~~~~G~HP~~~~ 69 (256)
T COG0084 3 LIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGT-------------DLEDFKRALELAEKYPNVYAAVGVHPLDAD 69 (256)
T ss_pred cEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEeec-------------CHHHHHHHHHHHHhCCCeEEEEeeCCCccc
Confidence 7999999975322 34566666666665443 2344445555444444 4567776551
Q ss_pred ---CCChHHHHHHHHh-------cCceeEeccCCCC----CHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhc
Q 004611 469 ---SAKPDELHEIIKA-------GAMGLKLHEDWGS----TPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFK 534 (742)
Q Consensus 469 ---~~~~~~l~e~i~a-------Ga~glkl~~d~~~----t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~ 534 (742)
....+.+.+++.. |.+|+..+-.... -.+.+..-+++|++++.++.+|+....+ -+-+.+....
T Consensus 70 ~~~~~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~--d~~~iL~~~~ 147 (256)
T COG0084 70 EHSEEDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHE--DTLEILKEEG 147 (256)
T ss_pred cccHHHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHH--HHHHHHHhcC
Confidence 1223445555542 4556655433322 2355677789999999999999953211 1223333332
Q ss_pred CCeEEEEecccCCCCCCHHHHHHhhhcCcc
Q 004611 535 GRTIHTYHSEGAGGGHAPDIIKVCGVKNVL 564 (742)
Q Consensus 535 g~~ih~~H~~gaggghapdiI~~a~~~~vl 564 (742)
...--++|+.+. +.+..+.+-..+..
T Consensus 148 ~~~~gi~HcFsG----s~e~a~~~~d~G~y 173 (256)
T COG0084 148 APVGGVLHCFSG----SAEEARKLLDLGFY 173 (256)
T ss_pred CCCCEEEEccCC----CHHHHHHHHHcCeE
Confidence 112233444432 46777776666543
No 144
>PRK09358 adenosine deaminase; Provisional
Probab=96.98 E-value=0.03 Score=61.59 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=90.0
Q ss_pred cCceeEeccC-CCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHH-hcCCeEEEEecccCCCCCCHHHHHHhh
Q 004611 482 GAMGLKLHED-WGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAA-FKGRTIHTYHSEGAGGGHAPDIIKVCG 559 (742)
Q Consensus 482 Ga~glkl~~d-~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a-~~g~~ih~~H~~gaggghapdiI~~a~ 559 (742)
+..|+.+..+ +..+++.+..+++.|+++|+++++|+........+...+.. ...+..|..+... .++.++..+
T Consensus 166 ~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~Hg~~l~~-----~~~~~~~l~ 240 (340)
T PRK09358 166 GVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGHGVRAIE-----DPALMARLA 240 (340)
T ss_pred cEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccchhhhhcc-----CHHHHHHHH
Confidence 3456666533 45678999999999999999999999422112234455552 3344444444321 467788888
Q ss_pred hcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccch
Q 004611 560 VKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGE 639 (742)
Q Consensus 560 ~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge 639 (742)
+.++.. ..+|+..+..... ..-...+...|.+.|+++++|||.+.....
T Consensus 241 ~~gi~v-~~cP~Sn~~l~~~----------------------------~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~-- 289 (340)
T PRK09358 241 DRRIPL-EVCPTSNVQTGAV----------------------------PSLAEHPLKTLLDAGVRVTINTDDPLVFGT-- 289 (340)
T ss_pred HcCCeE-EECCCcccccccc----------------------------CCcccChHHHHHHCCCEEEECCCCCcccCC--
Confidence 877532 2223222211100 000123456677889999999998654311
Q ss_pred hhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 640 VISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 640 ~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
..+.....+.. ..++++.+ +..++.|+.+..-++
T Consensus 290 ---~l~~e~~~~~~-----------~~~l~~~e-l~~l~~nai~~sf~~ 323 (340)
T PRK09358 290 ---TLTEEYEALAE-----------AFGLSDED-LAQLARNALEAAFLS 323 (340)
T ss_pred ---CHHHHHHHHHH-----------HhCCCHHH-HHHHHHHHHHHHCCC
Confidence 12222222211 23889999 566788988876554
No 145
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=96.56 E-value=0.019 Score=58.71 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=66.7
Q ss_pred ceeeccCCC--CchHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHh----cCCC----CceEeecCCCCC
Q 004611 400 AIDCHVHFI--CPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQS----TDDL----PLNFGFTGKGNS 469 (742)
Q Consensus 400 fID~HvH~~--~P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a----~~~~----~vn~g~~~~g~~ 469 (742)
+||+|+|.. +-+.+.....+|+.+++.....|....++... ..++++.+.. +... .+.+|.++++..
T Consensus 2 ~iD~HiH~d~r~~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~---~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP 78 (254)
T COG1099 2 YIDSHIHLDVRGFEDLEKMALSGIREVITLAHDPYPMKTAEVY---LDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIP 78 (254)
T ss_pred ccccccccccccHHHHHHHHHhChhhhhhcccCCCCcccHHHH---HHHHHHHHccchhhHHhhCceeeEEeccCCCCCC
Confidence 699999985 34457788889999998754444433332211 1222222221 2222 345677887766
Q ss_pred CChHHH----HHHHH-hcCceeEeccCCCCC---HHHHHHHHHHHHHcCCEEEEEcCCCccc
Q 004611 470 AKPDEL----HEIIK-AGAMGLKLHEDWGST---PAAIDNCLTVAEEYDIQVNIHTDTLNES 523 (742)
Q Consensus 470 ~~~~~l----~e~i~-aGa~glkl~~d~~~t---~~~l~~~l~~A~e~g~~v~iH~dtlne~ 523 (742)
.+.+.. .+++. .++.++.-..--..| .+.+..=+++|+++++++.+|+...|..
T Consensus 79 ~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~ 140 (254)
T COG1099 79 PELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRNKK 140 (254)
T ss_pred chHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcch
Confidence 554332 22221 122222111101123 3455677899999999999999655553
No 146
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=96.11 E-value=0.027 Score=59.54 Aligned_cols=145 Identities=19% Similarity=0.280 Sum_probs=71.5
Q ss_pred eeeccCCCCch-------HHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCCC----ceEeecCCCCC
Q 004611 401 IDCHVHFICPQ-------LAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLP----LNFGFTGKGNS 469 (742)
Q Consensus 401 ID~HvH~~~P~-------~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~~----vn~g~~~~g~~ 469 (742)
||+|+|+..+. ....+...|++.++..++ .....+...+.....+ ..+|+++....
T Consensus 1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~-------------~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~ 67 (255)
T PF01026_consen 1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVST-------------DPEDWERVLELASQYPDRVYPALGIHPWEAH 67 (255)
T ss_dssp EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEES-------------SHHHHHHHHHHHHHTTTEEEEEE---GGGGG
T ss_pred CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCC-------------CHHHhHHHHHHHhcCCCeEEEEecCCcchhh
Confidence 79999998732 233444444444432211 2233344444333333 45677765432
Q ss_pred C-C---hHHHHHH--HH------hcCceeEeccC-C---CCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHh
Q 004611 470 A-K---PDELHEI--IK------AGAMGLKLHED-W---GSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAF 533 (742)
Q Consensus 470 ~-~---~~~l~e~--i~------aGa~glkl~~d-~---~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~ 533 (742)
. . .+.+.++ .+ -|.+|+..+.. . ....+.+.+.+++|.+++.++++|+... ..-+-+.+...
T Consensus 68 ~~~~~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a--~~~~l~il~~~ 145 (255)
T PF01026_consen 68 EVNEEDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKA--HEELLEILKEY 145 (255)
T ss_dssp GHSHHHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESH--HHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCc--HHHHHHHHHhc
Confidence 2 1 2344444 22 14556665321 1 1234566788899999999999999531 11233444444
Q ss_pred cCC-eEEEEecccCCCCCCHHHHHHhhhcCcc
Q 004611 534 KGR-TIHTYHSEGAGGGHAPDIIKVCGVKNVL 564 (742)
Q Consensus 534 ~g~-~ih~~H~~gaggghapdiI~~a~~~~vl 564 (742)
... ..-+.|..+. ..+.++..-..++.
T Consensus 146 ~~~~~~~i~H~f~g----~~~~~~~~~~~g~~ 173 (255)
T PF01026_consen 146 GPPNLRVIFHCFSG----SPEEAKKFLDLGCY 173 (255)
T ss_dssp TGGTSEEEETT--S-----HHHHHHHHHTTEE
T ss_pred cccceeEEEecCCC----CHHHHHHHHhcCce
Confidence 422 1455666543 46666666555654
No 147
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=96.02 E-value=0.14 Score=54.73 Aligned_cols=67 Identities=9% Similarity=0.016 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCEEEEEcCCCc-cchHHHHHHHHhc--CCeEEEEecccCCCCCCHHHHHHhhhcCcccC
Q 004611 497 AAIDNCLTVAEEYDIQVNIHTDTLN-ESGFVEHTIAAFK--GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPS 566 (742)
Q Consensus 497 ~~l~~~l~~A~e~g~~v~iH~dtln-e~g~ve~~l~a~~--g~~ih~~H~~gaggghapdiI~~a~~~~vlps 566 (742)
+.+...+++|+++++++.+|+.... ...-+-+.+.... ...+-+.|+...+ .++.++.+.+.+...+
T Consensus 136 ~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~---~~~~~~~~~~~G~~i~ 205 (293)
T cd00530 136 KVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRND---DPDYLLKIAALGAYLE 205 (293)
T ss_pred HHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCC---CHHHHHHHHhCCCEEE
Confidence 4667889999999999999995321 1111111222211 1123455654222 4666776666665433
No 148
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=93.92 E-value=0.04 Score=52.12 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=21.6
Q ss_pred CCEEeecceeeccCCCCchH-HHHHHHH
Q 004611 393 RFIVTAGAIDCHVHFICPQL-AHDAIAS 419 (742)
Q Consensus 393 G~iVtPGfID~HvH~~~P~~-~~~al~~ 419 (742)
|++++|||||.|+|+.+|.+ +++.+..
T Consensus 1 ~kli~~g~vd~hVhlrepg~~~keti~t 28 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREPGFEAKETIET 28 (142)
T ss_pred Cceeehhhhhhhhhhhcccchhhhhhhc
Confidence 68999999999999999875 4444444
No 149
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=93.81 E-value=3.6 Score=44.40 Aligned_cols=148 Identities=19% Similarity=0.199 Sum_probs=84.2
Q ss_pred EeecceeeccCCCCchHHHHHHHHHHHHHHhCCCCCCCCCcccccCCChHHHHHHHHhcCCC----C-ceEeecCCCCCC
Q 004611 396 VTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDL----P-LNFGFTGKGNSA 470 (742)
Q Consensus 396 VtPGfID~HvH~~~P~~~~~al~~GvTTl~~gGtgp~~~~~~~~~t~~~~~i~~~l~a~~~~----~-vn~g~~~~g~~~ 470 (742)
-+..-.|.|+|+.+.+..+..+..-...+...=+-|...+-.+++......-++++++.-.. | +.+.++. .-
T Consensus 6 ~i~rPdDwHlHLRdg~mL~~V~p~ts~~f~rAiIMPNL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlYLtd---~~ 82 (344)
T COG0418 6 TIRRPDDWHLHLRDGAMLKAVVPYTSRGFGRAIIMPNLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLYLTD---ST 82 (344)
T ss_pred eccCccceeEEecCccHHHHhhhhhhhhcceEEEcCCCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEEEecC---CC
Confidence 35566899999998764333322211111110011322222222222234444555553322 2 3334332 34
Q ss_pred ChHHHHHHHHhc-CceeEeccCC-------C-CCHHHHHHHHHHHHHcCCEEEEEcCCC--------ccchHHHHHHH--
Q 004611 471 KPDELHEIIKAG-AMGLKLHEDW-------G-STPAAIDNCLTVAEEYDIQVNIHTDTL--------NESGFVEHTIA-- 531 (742)
Q Consensus 471 ~~~~l~e~i~aG-a~glkl~~d~-------~-~t~~~l~~~l~~A~e~g~~v~iH~dtl--------ne~g~ve~~l~-- 531 (742)
+++.+++..+.| ..++|++-.- | .+-+.+...++..++.|+++.+|.|.. .|..|++..++
T Consensus 83 ~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl 162 (344)
T COG0418 83 TPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPL 162 (344)
T ss_pred CHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHH
Confidence 588888888887 4588887632 3 345777888899999999999999532 24456665544
Q ss_pred --HhcCCeEEEEecccC
Q 004611 532 --AFKGRTIHTYHSEGA 546 (742)
Q Consensus 532 --a~~g~~ih~~H~~ga 546 (742)
.+....+-+-|+...
T Consensus 163 ~~~fP~LKIV~EHiTT~ 179 (344)
T COG0418 163 RQRFPKLKIVLEHITTK 179 (344)
T ss_pred HhhCCcceEEEEEeccH
Confidence 455667888888863
No 150
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=92.03 E-value=1.6 Score=46.21 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=53.5
Q ss_pred ChHHHHHHHHhcCceeEeccCC--CCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecc
Q 004611 471 KPDELHEIIKAGAMGLKLHEDW--GSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSE 544 (742)
Q Consensus 471 ~~~~l~e~i~aGa~glkl~~d~--~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~ 544 (742)
..+.++++.+.|..|++++..+ ..+.+.+...++.+.++|+++.+|+... ....+...+..+ +.++-+.|..
T Consensus 82 ~~~~l~~~~~~g~rGvRl~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~-~l~~l~~l~~~~-~l~ivldH~G 155 (263)
T cd01311 82 TDAELKEMHDAGVRGVRFNFLFGGVDNKDELDEIAKRAAELGWHVQVYFDAV-DLPALLPFLQKL-PVAVVIDHFG 155 (263)
T ss_pred CHHHHHHHHHCCCeEEEEecccCCCCCHHHHHHHHHHHHHcCCEEEEEeCHh-hHHHHHHHHHHC-CCCEEEECCC
Confidence 3577777877899999988754 2367778889999999999999998431 222355567777 7788888864
No 151
>PRK09875 putative hydrolase; Provisional
Probab=91.70 E-value=5.6 Score=43.17 Aligned_cols=148 Identities=11% Similarity=-0.011 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcC--CeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCCC
Q 004611 497 AAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKG--RTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPY 574 (742)
Q Consensus 497 ~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g--~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p~ 574 (742)
..++.+.+.+.+.|.++.+|+..-++.--+-+.+....- ..+-+.|.... ..++.+....+.++.....
T Consensus 139 kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~---~d~~~~~~l~~~G~~l~fD------ 209 (292)
T PRK09875 139 KVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLK---DNLDNILKMIDLGAYVQFD------ 209 (292)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCC---CCHHHHHHHHHcCCEEEec------
Confidence 445677788889999999998532221111122222222 35666776432 3566666666666542211
Q ss_pred cchhhhhhcceEEEeeccCCC--chHHHHHhhhhhhhhhhhHHHHHHHCC--CeEEEecCCCccCccchhhhhhhhhhhh
Q 004611 575 TSNTIDEHLDMLMVCHHLHKD--IPEDVAFAESRIRAETIAAEDILHDMG--AISIISSDSQAMGRIGEVISRTWQTAHK 650 (742)
Q Consensus 575 t~~tl~e~ld~l~v~hhl~~~--~~edia~a~~Rir~~t~a~~~~L~d~G--v~~~lgSDs~a~gr~ge~i~~~~~~~~~ 650 (742)
+.... .+. .+.......|.+.| -.+++|+|.......... ..|.....
T Consensus 210 ----------------~~g~~~~~pd----------~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~--gg~G~~~i 261 (292)
T PRK09875 210 ----------------TIGKNSYYPD----------EKRIAMLHALRDRGLLNRVMLSMDITRRSHLKAN--GGYGYDYL 261 (292)
T ss_pred ----------------cCCCcccCCH----------HHHHHHHHHHHhcCCCCeEEEeCCCCCccccccc--CCCChhHH
Confidence 11100 010 12234555666667 378889996322110000 00000111
Q ss_pred hhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcC
Q 004611 651 MKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANG 686 (742)
Q Consensus 651 m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lG 686 (742)
+... .+. ....|++.+++=++...||+++|+
T Consensus 262 ~~~~-ip~----L~~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 262 LTTF-IPQ----LRQSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred HHHH-HHH----HHHcCCCHHHHHHHHHHCHHHHhC
Confidence 1100 000 034589999999999999999874
No 152
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=91.66 E-value=3.5 Score=44.82 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=74.5
Q ss_pred cCceeEeccCCCC---CHHHHHHHHHHHHHcC-CEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHH
Q 004611 482 GAMGLKLHEDWGS---TPAAIDNCLTVAEEYD-IQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKV 557 (742)
Q Consensus 482 Ga~glkl~~d~~~---t~~~l~~~l~~A~e~g-~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~ 557 (742)
...|+.+..+-.. .+..+..+++.|++.+ +++.+|+.-......+.+.+.....|.-|-++... .|+.++.
T Consensus 135 ~vvG~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~~~~~~~RIgHg~~~~~-----~p~~~~~ 209 (305)
T cd00443 135 YVVGIDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALLLLPDRIGHGIFLLK-----HPELIYL 209 (305)
T ss_pred CEEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHHHHhccceeeceEecCC-----CHHHHHH
Confidence 4667777665433 5788889999999999 99999993222223356666655667777777643 5788888
Q ss_pred hhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccC
Q 004611 558 CGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMG 635 (742)
Q Consensus 558 a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~g 635 (742)
..+.++. ...+|+....... . ..-...+...+.+.|++++++||.+.+.
T Consensus 210 l~~~~i~-ie~CP~SN~~~~~------------------~----------~~~~~hP~~~~~~~G~~v~i~TDd~~~~ 258 (305)
T cd00443 210 VKLRNIP-IEVCPTSNVVLGT------------------V----------QSYEKHPFMRFFKAGLPVSLSTDDPGIF 258 (305)
T ss_pred HHHcCCE-EEECcchhhhhcC------------------C----------CChhhChHHHHHHCCCeEEEeCCCCccc
Confidence 8887752 1112221111100 0 0001133455677799999999997643
No 153
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=89.64 E-value=1.6 Score=45.56 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=84.2
Q ss_pred EeecceeeccCCCCchHHHHHHHHHHHHHHhCCCCC-CCCCccccc---CCChHHHHHHHHhcC---CCCceEeecCCCC
Q 004611 396 VTAGAIDCHVHFICPQLAHDAIASGITTLVGGGTGP-ADGTRATTC---TPAPSQMKLMLQSTD---DLPLNFGFTGKGN 468 (742)
Q Consensus 396 VtPGfID~HvH~~~P~~~~~al~~GvTTl~~gGtgp-~~~~~~~~~---t~~~~~i~~~l~a~~---~~~vn~g~~~~g~ 468 (742)
=+++.-|.|+|+.... .+..-+-+.+.||... .-++|..+. ++..-..+..++... ..-+.+.++.+
T Consensus 6 ~i~~~~DmHvHlR~g~----ml~aVvP~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~kL~skttfLMslYLs~~-- 79 (344)
T KOG2902|consen 6 TITQPDDMHVHLRDGD----MLHAVVPHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIMKLPSKTTFLMSLYLSDK-- 79 (344)
T ss_pred ecCCccceeEEeccCC----eeeeeccccccCceeEEEEcCCCCCCcchHHHHHHHHHHHHhcCccceeEEEEeecCC--
Confidence 3678899999998664 3444456667777641 122232211 111222233333221 12244444443
Q ss_pred CCChHHHHHHHHhcCc-eeEeccCC-------CCCH--HHHHHHHHHHHHcCCEEEEEcCCCc---------cchHHHHH
Q 004611 469 SAKPDELHEIIKAGAM-GLKLHEDW-------GSTP--AAIDNCLTVAEEYDIQVNIHTDTLN---------ESGFVEHT 529 (742)
Q Consensus 469 ~~~~~~l~e~i~aGa~-glkl~~d~-------~~t~--~~l~~~l~~A~e~g~~v~iH~dtln---------e~g~ve~~ 529 (742)
..++.+.+..+.|++ |+|.+-.- |.++ ....-.++...+.++++.+|-+-.. |.-|+...
T Consensus 80 -ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~~Flptl 158 (344)
T KOG2902|consen 80 -TTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEKIFLPTL 158 (344)
T ss_pred -CCHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCCceecchhhhHHHH
Confidence 357888888877554 88876532 2333 4456677888999999999985311 22233333
Q ss_pred HH---HhcCCeEEEEecccCCCCCCHHHHHHhhh
Q 004611 530 IA---AFKGRTIHTYHSEGAGGGHAPDIIKVCGV 560 (742)
Q Consensus 530 l~---a~~g~~ih~~H~~gaggghapdiI~~a~~ 560 (742)
+. .+....+-.-|+..+. +...++.|..
T Consensus 159 l~LhqrfP~LKivlEHcTt~d---Av~~ve~a~~ 189 (344)
T KOG2902|consen 159 LQLHQRFPQLKIVLEHCTTMD---AVNFVESAKE 189 (344)
T ss_pred HHHHHhCccceeHHHhcccHH---HHHHHHhhcC
Confidence 33 3445566666766543 3444444433
No 154
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=88.73 E-value=5.3 Score=44.36 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=72.8
Q ss_pred CceeEeccCC--CCCHHHHHHHHHHHHHcC--CEEEEEc-CCCc----cchHHHHHHHHhcCCeEEEEecccCCCCCCHH
Q 004611 483 AMGLKLHEDW--GSTPAAIDNCLTVAEEYD--IQVNIHT-DTLN----ESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPD 553 (742)
Q Consensus 483 a~glkl~~d~--~~t~~~l~~~l~~A~e~g--~~v~iH~-dtln----e~g~ve~~l~a~~g~~ih~~H~~gaggghapd 553 (742)
+.|+.+..+- +..+..+..+++.|++.| +++.+|+ +..+ ....+.+.+.....|.-|-++... .|+
T Consensus 163 VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG~~~~~-----dp~ 237 (345)
T cd01321 163 IAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHGFALPK-----HPL 237 (345)
T ss_pred EEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCccccccCc-----CHH
Confidence 5677775543 446788889999999999 9999999 4321 112355566444456666666542 689
Q ss_pred HHHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCc
Q 004611 554 IIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQA 633 (742)
Q Consensus 554 iI~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a 633 (742)
+++.+++.++.... +|+..+.... +..-..-+...|.+.|++++++||.++
T Consensus 238 ll~~l~~~~I~lEv-CPtSN~~~~~----------------------------v~~~~~HPl~~ll~~Gv~vtinTDDp~ 288 (345)
T cd01321 238 LMDLVKKKNIAIEV-CPISNQVLGL----------------------------VSDLRNHPAAALLARGVPVVISSDDPG 288 (345)
T ss_pred HHHHHHHcCCeEEE-Ccchhhhhcc----------------------------ccchhhChHHHHHHCCCeEEEeCCCcc
Confidence 99999988863111 1221111110 000011234467778999999999976
Q ss_pred c
Q 004611 634 M 634 (742)
Q Consensus 634 ~ 634 (742)
+
T Consensus 289 ~ 289 (345)
T cd01321 289 F 289 (345)
T ss_pred h
Confidence 5
No 155
>PTZ00124 adenosine deaminase; Provisional
Probab=84.64 E-value=18 Score=40.50 Aligned_cols=153 Identities=13% Similarity=0.134 Sum_probs=83.7
Q ss_pred CceeEeccCCCCCHHHHHHHHHHHHHcCCEEEEEc-CC--CccchHHHHHHH-HhcCCeEEEEecccCCCCCCHHHHHHh
Q 004611 483 AMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHT-DT--LNESGFVEHTIA-AFKGRTIHTYHSEGAGGGHAPDIIKVC 558 (742)
Q Consensus 483 a~glkl~~d~~~t~~~l~~~l~~A~e~g~~v~iH~-dt--lne~g~ve~~l~-a~~g~~ih~~H~~gaggghapdiI~~a 558 (742)
++|+.+..+-.. ......+++.|++.|+.+.+|+ ++ ......+.+.+. ....|.-|-++... .++.++.+
T Consensus 193 vvGiDLaG~E~~-~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~~-----d~~l~~~l 266 (362)
T PTZ00124 193 FVGFDHAGHEVD-LKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVAE-----SQELIDMV 266 (362)
T ss_pred eEEEeccCCCCC-cHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccccCC-----CHHHHHHH
Confidence 556655443221 2446788899999999999999 32 111112223333 34456667766543 68999999
Q ss_pred hhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccc
Q 004611 559 GVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIG 638 (742)
Q Consensus 559 ~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~g 638 (742)
.+.++... ..|+..+....+ ..-...+...|.+.|++++++||.+++..
T Consensus 267 ~~~~I~lE-vCPtSN~~~~~v----------------------------~~~~~HPi~~l~~~Gv~v~InTDDp~~~~-- 315 (362)
T PTZ00124 267 KEKDILLE-VCPISNVLLNNA----------------------------KSMDTHPIRKLYDAGVKVSVNSDDPGMFL-- 315 (362)
T ss_pred HHcCCeEE-ECCcchhhhhcC----------------------------CchhhHHHHHHHHCCCcEEEeCCCccccC--
Confidence 88876311 112222211100 00011344566778999999999876532
Q ss_pred hhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCC
Q 004611 639 EVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGF 687 (742)
Q Consensus 639 e~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl 687 (742)
-.+..-|.. +. ...|++..+..++ +.|+..+.-+
T Consensus 316 t~l~~Ey~~---~~-----------~~~gls~~~l~~l-~~nai~asF~ 349 (362)
T PTZ00124 316 TNINDDYEE---LY-----------THLNFTLADFMKM-NEWALEKSFL 349 (362)
T ss_pred CChhHHHHH---HH-----------HHcCCCHHHHHHH-HHHHHHHhcC
Confidence 112222211 11 1347888777766 5566554433
No 156
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=81.61 E-value=3.6 Score=44.89 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=48.6
Q ss_pred cCceeEeccC-CCCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHH-hcCCeEEEEecccCCCCCCHHHHHHhh
Q 004611 482 GAMGLKLHED-WGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAA-FKGRTIHTYHSEGAGGGHAPDIIKVCG 559 (742)
Q Consensus 482 Ga~glkl~~d-~~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a-~~g~~ih~~H~~gaggghapdiI~~a~ 559 (742)
+..|+.+..+ ....+......++.|++.++.+.+|+--......+.+.+.. ...|.-|-+++.. .|++++.+.
T Consensus 164 ~vvG~dl~g~E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~l~~~RIgHG~~~~~-----~p~l~~~~~ 238 (331)
T PF00962_consen 164 GVVGFDLAGDEDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPEHIRDAILLLGADRIGHGVRLIK-----DPELLELLA 238 (331)
T ss_dssp TEEEEEEESSTTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHTST-SEEEE-GGGGG-----SHHHHHHHH
T ss_pred eEEEEEecCCcccCchHHHHHHHhhhcccceeecceecccCCcccccchhhhccceeecchhhhhh-----hhHHHHHHH
Confidence 5667776653 23445557788899999999999999322223334555554 3456666666543 689999888
Q ss_pred hcCc
Q 004611 560 VKNV 563 (742)
Q Consensus 560 ~~~v 563 (742)
+.++
T Consensus 239 ~~~I 242 (331)
T PF00962_consen 239 ERQI 242 (331)
T ss_dssp HTT-
T ss_pred HhCC
Confidence 8775
No 157
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=79.96 E-value=5.6 Score=38.17 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=41.7
Q ss_pred CCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEE
Q 004611 133 PGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 133 pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~ 212 (742)
-|.+.+.+..|++++|. +++|.|+|..+-|=.+.++.| |.+...+||+++++++.
T Consensus 53 a~n~~~~P~~I~VkaGD-~Vtl~vtN~d~~~H~f~i~~~------------------------gis~~I~pGet~TitF~ 107 (135)
T TIGR03096 53 AFNVLNEPEALVVKKGT-PVKVTVENKSPISEGFSIDAY------------------------GISEVIKAGETKTISFK 107 (135)
T ss_pred eeeeEEcCCEEEECCCC-EEEEEEEeCCCCccceEECCC------------------------CcceEECCCCeEEEEEE
Confidence 57788899999999996 889999999986433333322 34667788888888876
Q ss_pred E
Q 004611 213 S 213 (742)
Q Consensus 213 ~ 213 (742)
+
T Consensus 108 a 108 (135)
T TIGR03096 108 A 108 (135)
T ss_pred C
Confidence 4
No 158
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=76.86 E-value=14 Score=39.46 Aligned_cols=140 Identities=16% Similarity=0.238 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEcCCCccchHH--HHHHHHhc-CCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCC
Q 004611 493 GSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFV--EHTIAAFK-GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTN 569 (742)
Q Consensus 493 ~~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~v--e~~l~a~~-g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstn 569 (742)
....+.+..++.+|++.|+++++|+++..+..+. .+..+..+ ...--..|- ++..+..|...++.||--
T Consensus 141 ~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~~~~~VVkHh-------a~p~v~~~~~~Gi~pSV~- 212 (285)
T COG1831 141 EASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGIKPYRVVKHH-------APPLVLKCEEVGIFPSVP- 212 (285)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCCCcceeEeec-------CCccchhhhhcCcCCccc-
Confidence 3456778899999999999999999876654331 11121111 011112221 222233333333322211
Q ss_pred CCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhh
Q 004611 570 PTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAH 649 (742)
Q Consensus 570 p~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~ 649 (742)
+..-..++.+. .|-.+++-||..---+...-+.-.|..+.
T Consensus 213 ---------------------------------------asr~~v~~a~~-~g~~FmmETDyIDDp~RpgavL~PktVPr 252 (285)
T COG1831 213 ---------------------------------------ASRKNVEDAAE-LGPRFMMETDYIDDPRRPGAVLGPKTVPR 252 (285)
T ss_pred ---------------------------------------ccHHHHHHHHh-cCCceEeecccccCcccCCCcCCccchhH
Confidence 11112334443 48999999996432222223334555555
Q ss_pred hhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 650 KMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 650 ~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
+.+... ....++.+.+-+-.-.||.++.|++
T Consensus 253 r~~~i~--------~~g~~~ee~vy~i~~E~pe~VYg~~ 283 (285)
T COG1831 253 RTREIL--------EKGDLTEEDVYRIHVENPERVYGIE 283 (285)
T ss_pred HHHHHH--------HhcCCcHHHHHHHHHhCHHHHhCcc
Confidence 444321 1234567777777788999999875
No 159
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=74.97 E-value=31 Score=38.35 Aligned_cols=109 Identities=11% Similarity=0.143 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCCeEEEEecccCCCCCCHHHHHHhhhcCcccCCCCCCCC
Q 004611 494 STPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRP 573 (742)
Q Consensus 494 ~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnp~~p 573 (742)
-.++....+.+.++++|+.+.+|+.......++.+.+....... +.|...+- ..++++....+.++-..+ .|+..
T Consensus 182 ~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~r--I~HGi~~~--~d~~L~~~l~~~qI~lev-CP~SN 256 (345)
T COG1816 182 YPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAER--IGHGIRAI--EDPELLYRLAERQIPLEV-CPLSN 256 (345)
T ss_pred CCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchhh--hccccccc--cCHHHHHHHHHhCCeeEE-CCcch
Confidence 46778889999999999999999954344445666555444332 23322222 256777777666642111 11111
Q ss_pred CcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCccC
Q 004611 574 YTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMG 635 (742)
Q Consensus 574 ~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~g 635 (742)
.... ...++ .-.+.+.+.|+|+.++++||.+++.
T Consensus 257 i~~~------------------~v~~~----------~~hPf~~~~d~Gv~VsLnTDdp~~f 290 (345)
T COG1816 257 IQLG------------------VVPSL----------AKHPFKKLFDAGVKVSLNTDDPLYF 290 (345)
T ss_pred hhcc------------------cccch----------hhCcHHHHHHcCCceEEcCCChhhc
Confidence 1111 00111 1124667888999999999998654
No 160
>PF06651 DUF1163: Protein of unknown function (DUF1163); InterPro: IPR009544 This entry represents the C terminus of hypothetical Arabidopsis thaliana proteins of unknown function.
Probab=74.19 E-value=1.7 Score=36.20 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=13.1
Q ss_pred CceeEeCCCCeeEEEE
Q 004611 196 GTATRFEPGESKIVKL 211 (742)
Q Consensus 196 g~~~rfepg~~~~v~l 211 (742)
.+.+|||||.++.-++
T Consensus 44 e~~LRFEpgse~kAT~ 59 (70)
T PF06651_consen 44 EVTLRFEPGSEMKATM 59 (70)
T ss_pred ceEEEecCCccchhhh
Confidence 4689999999887664
No 161
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=74.17 E-value=4.3 Score=44.86 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=33.8
Q ss_pred eEEEEEEeCCCcceeecc----cccccccCCccccc-------cccccccccccCCCceeEeCCCCeeEEEEEEecCceE
Q 004611 151 AVILKVVNTGDRPVQVGS----HYHFIEVNPYLVFD-------RRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKV 219 (742)
Q Consensus 151 ~~~~~v~n~~dr~~qvgs----h~h~~e~n~~l~f~-------r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~~~g~~~ 219 (742)
+.+++|+|+||.||++|. -.+|. |+.+.=| .-+--|+.++=++ -..|||+|+|++-.-...=.
T Consensus 266 ~~~l~VtN~g~~pv~LgeF~tA~vrFl--n~~v~~~~~~~P~~l~A~~gL~vs~~~----pI~PGETrtl~V~a~dA~We 339 (381)
T PF04744_consen 266 TMTLTVTNNGDSPVRLGEFNTANVRFL--NPDVPTDDPDYPDELLAERGLSVSDNS----PIAPGETRTLTVEAQDAAWE 339 (381)
T ss_dssp EEEEEEEEESSS-BEEEEEESSS-EEE---TTT-SS-S---TTTEETT-EEES--S-----B-TT-EEEEEEEEE-HHHH
T ss_pred EEEEEEEcCCCCceEeeeEEeccEEEe--CcccccCCCCCchhhhccCcceeCCCC----CcCCCceEEEEEEeehhHHH
Confidence 468999999999999995 24443 3333222 0111233333221 35799999999854333333
Q ss_pred EeccCC
Q 004611 220 IRGGNG 225 (742)
Q Consensus 220 ~~g~~~ 225 (742)
+.-++.
T Consensus 340 veRL~~ 345 (381)
T PF04744_consen 340 VERLSD 345 (381)
T ss_dssp HTTGGG
T ss_pred Hhhhhh
Confidence 333333
No 162
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=73.68 E-value=4.4 Score=44.65 Aligned_cols=63 Identities=27% Similarity=0.461 Sum_probs=36.5
Q ss_pred CCCc-eEEEEEEeCCCcceeecc----cccccccCCccccccccccccccccCCCcee----EeCCCCeeEEEEE
Q 004611 147 HGRK-AVILKVVNTGDRPVQVGS----HYHFIEVNPYLVFDRRKAFGMRLNIAAGTAT----RFEPGESKIVKLI 212 (742)
Q Consensus 147 ~~~~-~~~~~v~n~~dr~~qvgs----h~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~----rfepg~~~~v~l~ 212 (742)
+||. +++++|+|.||-||++|= -.+|...|.. +.=...|..-| ++-|-+| -..|||+|+|++-
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v--~~~~~~yP~~l-la~GL~v~d~~pI~PGETr~v~v~ 351 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGV--RVLDPDYPREL-LAEGLEVDDQSAIAPGETVEVKME 351 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccc--cccCCCChHHH-hhccceeCCCCCcCCCcceEEEEE
Confidence 3553 479999999999999983 3344433211 11122222110 1114443 4789999999954
No 163
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=70.00 E-value=54 Score=37.06 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=75.7
Q ss_pred hcCceeEecc--CCCCCHHHHHHHHHHHHHcCCEEEEEcC-CCccchHHHHHHH-HhcCCeEEEEecccCCCCCCHHHHH
Q 004611 481 AGAMGLKLHE--DWGSTPAAIDNCLTVAEEYDIQVNIHTD-TLNESGFVEHTIA-AFKGRTIHTYHSEGAGGGHAPDIIK 556 (742)
Q Consensus 481 aGa~glkl~~--d~~~t~~~l~~~l~~A~e~g~~v~iH~d-tlne~g~ve~~l~-a~~g~~ih~~H~~gaggghapdiI~ 556 (742)
.++.|+.+.. +-+-.+.....++..+.+.|+...+|+. +......++..++ ....|.-|-|++.- .|.++.
T Consensus 209 ~~VvGidL~G~e~~~~p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~~LD~l~~~RIGHG~~l~~-----dp~L~~ 283 (399)
T KOG1097|consen 209 NFVVGIDLVGQEDLGGPLSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKNALDLLGTERIGHGYFLTK-----DPELIN 283 (399)
T ss_pred CeEEEEecCCCCCCCCChhhhHHHHHhhhhcCCcEEEEccccCCChHHHHHHHHhhCCccccCceeccC-----CHHHHH
Confidence 3455665544 3455667778888888889999999994 4345566788888 44566677777654 688899
Q ss_pred HhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCcc
Q 004611 557 VCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAM 634 (742)
Q Consensus 557 ~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~ 634 (742)
.++..|+. ++ +|-..+... . -+..-+..+...+.+.|+++.++||.+++
T Consensus 284 ~~k~~nI~---------lE------------iCP~SN~vl-~-------~v~d~rnhp~~~~~~~~vP~vI~sDDP~~ 332 (399)
T KOG1097|consen 284 LLKSRNIA---------LE------------ICPISNQVL-G-------LVSDLRNHPVARLLAAGVPVVINSDDPGF 332 (399)
T ss_pred HHHhcCce---------EE------------Eccchhhhe-e-------ccccccccHHHHHHhCCCCEEEeCCCccc
Confidence 98888862 11 222111100 0 00011123445566779999999998753
No 164
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=68.26 E-value=6.8 Score=33.44 Aligned_cols=42 Identities=33% Similarity=0.523 Sum_probs=22.6
Q ss_pred eEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCce--------eEeCCCCeeEEEEE
Q 004611 151 AVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTA--------TRFEPGESKIVKLI 212 (742)
Q Consensus 151 ~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~--------~rfepg~~~~v~l~ 212 (742)
++++.|+|.|+.+++-. -.+|+.|+|.. -..+||+++++++.
T Consensus 8 ~~~~tv~N~g~~~~~~v--------------------~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~ 57 (78)
T PF10633_consen 8 TVTLTVTNTGTAPLTNV--------------------SLSLSLPEGWTVSASPASVPSLPPGESVTVTFT 57 (78)
T ss_dssp EEEEEEE--SSS-BSS---------------------EEEEE--TTSE---EEEEE--B-TTSEEEEEEE
T ss_pred EEEEEEEECCCCceeeE--------------------EEEEeCCCCccccCCccccccCCCCCEEEEEEE
Confidence 47999999999887421 23455666655 25678887777653
No 165
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=66.27 E-value=21 Score=37.87 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=46.6
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCcccccccccccccc-ccCCCceeEeCCCCeeEEEEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRL-NIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l-~i~~g~~~rfepg~~~~v~l~ 212 (742)
..+.+....|.++++...++|.|.|+++.|.=|=|= .+. .|-.. +. =|-.=-=.|.|||+...|.++
T Consensus 40 Agi~l~~TRvIy~~~~~~~sl~i~N~~~~p~LvQsW---vd~-----~~~~~----~~pFiVtPPLfRLep~~~~~lRIi 107 (246)
T PRK15233 40 YGLRLGTTRVIYKEDAPSTSFWIMNEKEYPILVQTQ---VYN-----DDKSS----KAPFIVTPPILKVESNARTRLKVI 107 (246)
T ss_pred eeEEeCceEEEEeCCCcEEEEEEEcCCCCcEEEEEE---Eec-----CCCCc----cCCEEECCCeEEECCCCceEEEEE
Confidence 447778888999999999999999999999443331 121 11000 00 011111359999999999999
Q ss_pred Eec
Q 004611 213 SIG 215 (742)
Q Consensus 213 ~~~ 215 (742)
..|
T Consensus 108 ~~~ 110 (246)
T PRK15233 108 PTS 110 (246)
T ss_pred ECC
Confidence 764
No 166
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=64.48 E-value=13 Score=34.18 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=30.8
Q ss_pred ceEEEEEEeCCCcceeecc-cccccccCCcccccccc-ccc-------cccccCCCceeEeCCCCeeEEEEE
Q 004611 150 KAVILKVVNTGDRPVQVGS-HYHFIEVNPYLVFDRRK-AFG-------MRLNIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 150 ~~~~~~v~n~~dr~~qvgs-h~h~~e~n~~l~f~r~~-~~g-------~~l~i~~g~~~rfepg~~~~v~l~ 212 (742)
...-++++|+||+++.+-+ +--.++ .-++-+.. .=| -.+.||||..+.|.||- ..|.|.
T Consensus 16 ~a~y~ti~N~g~~~~~L~~v~s~~a~---~v~lh~~~~~~g~~~m~~v~~i~ipa~~~v~l~pgg-~HlmL~ 83 (110)
T PF04314_consen 16 TAAYFTITNNGDQDDRLVGVSSPAAA---RVELHETVMEDGVMKMRPVDSIPIPAGSTVELKPGG-YHLMLM 83 (110)
T ss_dssp EEEEEEEE-CSSSEEEEEEEE-TTCC---EEEEEEECCCCCEEEECCSS-EEEETT-EEEE-CCC-CEEEEE
T ss_pred EEEEEEEEeCCCCCeEEEEEEcCCCc---eEEEEEEEccCCeEEEEECCCEEECCCCeEEecCCC-EEEEEe
Confidence 3467889999999976532 111111 11222211 112 17999999999999985 444443
No 167
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=63.71 E-value=17 Score=32.76 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=18.1
Q ss_pred EeCCCceeeCCCCceEEEEEEeCCCcc
Q 004611 137 IPGGGSITLNHGRKAVILKVVNTGDRP 163 (742)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~v~n~~dr~ 163 (742)
.+.+..|++.+|. .++|.++|.|+++
T Consensus 31 ~f~P~~i~v~~G~-~v~l~~~N~~~~~ 56 (104)
T PF13473_consen 31 GFSPSTITVKAGQ-PVTLTFTNNDSRP 56 (104)
T ss_dssp EEES-EEEEETTC-EEEEEEEE-SSS-
T ss_pred eEecCEEEEcCCC-eEEEEEEECCCCc
Confidence 4455678888885 5679999999996
No 168
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=62.97 E-value=2.3e+02 Score=30.75 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=50.2
Q ss_pred hHHHHHHHH-hcCceeEeccCC---CCCHHHHHHHHHHHHHcCCEEEEEcCCCc----------cchHHHHHHHHhcCCe
Q 004611 472 PDELHEIIK-AGAMGLKLHEDW---GSTPAAIDNCLTVAEEYDIQVNIHTDTLN----------ESGFVEHTIAAFKGRT 537 (742)
Q Consensus 472 ~~~l~e~i~-aGa~glkl~~d~---~~t~~~l~~~l~~A~e~g~~v~iH~dtln----------e~g~ve~~l~a~~g~~ 537 (742)
.+++++.++ .|..|++++... ..++..+..+.+.|.++|+++.+|+.... ..-.++.....+....
T Consensus 115 ~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~ 194 (293)
T COG2159 115 AEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELK 194 (293)
T ss_pred HHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCc
Confidence 345666665 578899986643 34556688999999999999999994211 1124666777777777
Q ss_pred EEEEec
Q 004611 538 IHTYHS 543 (742)
Q Consensus 538 ih~~H~ 543 (742)
+=+.|.
T Consensus 195 IVl~H~ 200 (293)
T COG2159 195 IVLGHM 200 (293)
T ss_pred EEEEec
Confidence 766665
No 169
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=62.49 E-value=1.1e+02 Score=35.77 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=66.5
Q ss_pred CceeEeccC--CCCCHHHHHHHHH-HHHHcCCEEEEEc-CCCcc----chHHHHHHHHhcCCeEEEEecccCCCCCCHHH
Q 004611 483 AMGLKLHED--WGSTPAAIDNCLT-VAEEYDIQVNIHT-DTLNE----SGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDI 554 (742)
Q Consensus 483 a~glkl~~d--~~~t~~~l~~~l~-~A~e~g~~v~iH~-dtlne----~g~ve~~l~a~~g~~ih~~H~~gaggghapdi 554 (742)
..|+.+..+ .+-++..+...+. .+++.++++..|+ |+... ...+.+.+.....|.-|-+++.. .|.+
T Consensus 290 vvGfDL~G~E~~g~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGHG~~l~~-----~P~l 364 (479)
T TIGR01431 290 VAGFDLVGQEDKGRSLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGHGFALVK-----HPLV 364 (479)
T ss_pred EEEEeccCCCCCCCCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHHHcCCccccCcccccC-----CHHH
Confidence 456766543 3556666666665 5556999999999 44321 12344444333344445555432 6999
Q ss_pred HHHhhhcCcccCCCCCCCCCcchhhhhhcceEEEeeccCCCchHHHHHhhhhhhhhhhhHHHHHHHCCCeEEEecCCCcc
Q 004611 555 IKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAM 634 (742)
Q Consensus 555 I~~a~~~~vlpsstnp~~p~t~~tl~e~ld~l~v~hhl~~~~~edia~a~~Rir~~t~a~~~~L~d~Gv~~~lgSDs~a~ 634 (742)
++.+++.++....+ |+....... ..+ ++ --+...|.+.|++++++||.+++
T Consensus 365 ~~~vke~~I~lEvC-P~SN~~l~~--------------v~~-----------~~---~HPl~~lla~Gvpv~InSDDP~~ 415 (479)
T TIGR01431 365 LQMLKERNIAVEVN-PISNQVLQL--------------VAD-----------LR---NHPCAYLFADNYPMVISSDDPAF 415 (479)
T ss_pred HHHHHHhCCeEEEC-ccchhhhcc--------------cCC-----------cc---cChHHHHHHCCCcEEEeCCCccc
Confidence 99999888642221 211111110 000 00 12344566779999999999865
No 170
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=55.85 E-value=16 Score=33.82 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=47.0
Q ss_pred eEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEEE
Q 004611 136 IIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLIS 213 (742)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~ 213 (742)
+.+..-.|+++++.+..+++|.|+|++|+.|=++. ...|. -.-+.. +-.+ +.+=-..+.+||+.+.|.++.
T Consensus 2 i~i~~trii~~~~~~~~~i~v~N~~~~~~~vq~~v--~~~~~-~~~~~~-~~~~---~vsPp~~~L~pg~~q~vRv~~ 72 (122)
T PF00345_consen 2 IQISPTRIIFNESQRSASITVTNNSDQPYLVQVWV--YDQDD-EDEDEP-TDPF---IVSPPIFRLEPGESQTVRVYR 72 (122)
T ss_dssp EEESSSEEEEETTSSEEEEEEEESSSSEEEEEEEE--EETTS-TTSSSS-SSSE---EEESSEEEEETTEEEEEEEEE
T ss_pred EEEccEEEEEeCCCCEEEEEEEcCCCCcEEEEEEE--EcCCC-cccccc-cccE---EEeCCceEeCCCCcEEEEEEe
Confidence 45666789999999999999999999999886655 22222 000000 0001 112235789999999999965
No 171
>COG4025 Predicted membrane protein [Function unknown]
Probab=54.17 E-value=28 Score=36.40 Aligned_cols=49 Identities=33% Similarity=0.494 Sum_probs=37.7
Q ss_pred CCceeEEeecCccCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCeeEeCCCceeeCCCCceEEEEEEe-----CCCcc
Q 004611 89 DGTKLITIHDPIASENGNLELALHGSFLPVPAMDKFPGIEDNNVPGRIIPGGGSITLNHGRKAVILKVVN-----TGDRP 163 (742)
Q Consensus 89 ~g~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~v~n-----~~dr~ 163 (742)
.++-=|-||+-|+.. ..||.|++... -...+| ..++|.|.| +|.||
T Consensus 224 E~~v~V~V~~DIaaN---------------------------vkPg~YiVe~n-~~~~eg-d~Vkl~VE~s~~s~rgsrP 274 (284)
T COG4025 224 EDLVEVFVHDDIAAN---------------------------VKPGYYIVEGN-FHGKEG-DIVKLLVEHSGRSFRGSRP 274 (284)
T ss_pred CCeEEEEEccchhhc---------------------------CCCCeEEecCc-ccCCCC-CeEEEEEecccceecCCCc
Confidence 457888999999875 56999987654 333344 578999999 89999
Q ss_pred eee
Q 004611 164 VQV 166 (742)
Q Consensus 164 ~qv 166 (742)
|.+
T Consensus 275 VRI 277 (284)
T COG4025 275 VRI 277 (284)
T ss_pred eEE
Confidence 976
No 172
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=51.27 E-value=46 Score=34.79 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=49.3
Q ss_pred CCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEE
Q 004611 133 PGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 133 pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~ 212 (742)
-+.+.+....|.++++....++.|+|+||.|+-|=|.. +. .|-....-+ +=.|. -.|.|||+++.|.++
T Consensus 23 ~a~v~l~~tRvi~~~~~~~~si~v~N~~~~p~lvQ~wv---~~-----~~~~~~~~f-ivtPP--l~rl~pg~~q~vRii 91 (230)
T PRK09918 23 AAGMVPETSVVIVEESDGEGSINVKNTDSNPILLYTTL---VD-----LPEDKSKLL-LVTPP--VARVEPGQSQQVRFI 91 (230)
T ss_pred EeeEEEccEEEEEECCCCeEEEEEEcCCCCcEEEEEEE---ec-----CCCCCCCCE-EEcCC--eEEECCCCceEEEEE
Confidence 35688888899999999999999999999998885532 11 111111100 11222 679999999999877
Q ss_pred Ee
Q 004611 213 SI 214 (742)
Q Consensus 213 ~~ 214 (742)
..
T Consensus 92 ~~ 93 (230)
T PRK09918 92 LK 93 (230)
T ss_pred EC
Confidence 44
No 173
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=48.41 E-value=50 Score=34.93 Aligned_cols=74 Identities=20% Similarity=0.393 Sum_probs=50.3
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCCcceeeccccccccc-CCccccccccccccccc-cCCCceeEeCCCCeeEEEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEV-NPYLVFDRRKAFGMRLN-IAAGTATRFEPGESKIVKL 211 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~-n~~l~f~r~~~~g~~l~-i~~g~~~rfepg~~~~v~l 211 (742)
+.+.+....|.++++.+.++|.|.|+|+.|+-|=| ..+- +..+. .=..+.+ |..=--.|.|||++..|.+
T Consensus 25 A~i~l~~TRvI~~~~~~~~sv~l~N~~~~p~LvQ~---Wvd~~~~~~~-----p~~~~~pfivtPPl~rl~p~~~q~lRI 96 (246)
T PRK09926 25 ADIVISGTRIIYKSDQKDVNVRLENKGNNPLLVQS---WLDTGDDNAE-----PGSIKVPFTATPPVSRIDPKRGQTIKL 96 (246)
T ss_pred eeEEeCceEEEEeCCCceEEEEEEeCCCCcEEEEE---EecCCCCccC-----ccccCCCEEEcCCeEEECCCCccEEEE
Confidence 55788888999999999999999999999988766 2221 11110 0000000 2222267999999999999
Q ss_pred EEec
Q 004611 212 ISIG 215 (742)
Q Consensus 212 ~~~~ 215 (742)
+..+
T Consensus 97 i~~~ 100 (246)
T PRK09926 97 MYTA 100 (246)
T ss_pred EeCC
Confidence 9654
No 174
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=48.39 E-value=34 Score=34.92 Aligned_cols=49 Identities=29% Similarity=0.434 Sum_probs=38.1
Q ss_pred CCceeEEeecCccCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCeeEeCCCceeeCCCCceEEEEEEe---CCCccee
Q 004611 89 DGTKLITIHDPIASENGNLELALHGSFLPVPAMDKFPGIEDNNVPGRIIPGGGSITLNHGRKAVILKVVN---TGDRPVQ 165 (742)
Q Consensus 89 ~g~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~v~n---~~dr~~q 165 (742)
++|--|-||+=|++. ..||.+.+...+ ..-+| +.++|.|.+ +|.||+.
T Consensus 154 ~~~v~V~V~dDI~AN---------------------------VkPg~YwV~~~~-d~~~G-~vVKl~VE~r~~rg~~Pvr 204 (206)
T PF09874_consen 154 ENLVRVFVHDDIAAN---------------------------VKPGYYWVEAVP-DVEEG-DVVKLLVEERTLRGARPVR 204 (206)
T ss_pred CCEEEEEEccchhhc---------------------------CCCCeEEecCCC-CCCCC-ceEEEEEecccccCCCCee
Confidence 468899999999975 679999887665 44455 578898988 5888886
Q ss_pred e
Q 004611 166 V 166 (742)
Q Consensus 166 v 166 (742)
+
T Consensus 205 I 205 (206)
T PF09874_consen 205 I 205 (206)
T ss_pred c
Confidence 5
No 175
>PF07100 ASRT: Anabaena sensory rhodopsin transducer; InterPro: IPR009794 This family consists of several hypothetical bacterial proteins of around 125 resides in length, including the hypothetical protein TM1070 from Thermotoga maritima, which has a beta-sandwich structure with a jelly-roll fold. The function of these proteins is unknown. ; PDB: 1NC7_A 2II9_D 2IIA_A 2II8_B 2II7_G.
Probab=46.94 E-value=13 Score=34.85 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=28.7
Q ss_pred EEEEEeCCCcceeecccccccccCCccccccccccccccccCCCce
Q 004611 153 ILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTA 198 (742)
Q Consensus 153 ~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~ 198 (742)
.+.|.|+||++-+|--+++|- ||+-.=+||+-+||.-.
T Consensus 30 ~~CiLN~~d~dA~i~it~yF~--------Dr~Pvgpy~~~VparRt 67 (121)
T PF07100_consen 30 SLCILNTGDEDAHIEITFYFE--------DRDPVGPYRVTVPARRT 67 (121)
T ss_dssp EEEEEE-SSS-EEEEEEEEES--------SS--EEEEEEEE-TTEE
T ss_pred eEEEEecCCCceEEEEEEEEc--------CCCCCccEEEEEcCceE
Confidence 678999999999999998875 89999999999998754
No 176
>PLN03080 Probable beta-xylosidase; Provisional
Probab=46.90 E-value=27 Score=43.07 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=30.3
Q ss_pred ceEEEEEEeCCCcc----eeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEE
Q 004611 150 KAVILKVVNTGDRP----VQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKL 211 (742)
Q Consensus 150 ~~~~~~v~n~~dr~----~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l 211 (742)
=+++++|+|||+|+ ||+-.+..-.-+.+ -.+.=.|+ .-|..+||++|+|++
T Consensus 686 ~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~----P~k~L~gF-------~kv~L~~Ges~~V~~ 740 (779)
T PLN03080 686 FNVHISVSNVGEMDGSHVVMLFSRSPPVVPGV----PEKQLVGF-------DRVHTASGRSTETEI 740 (779)
T ss_pred EEEEEEEEECCcccCcEEEEEEEecCccCCCC----cchhccCc-------EeEeeCCCCEEEEEE
Confidence 35889999999985 78876664221111 11111122 235567888888875
No 177
>PRK06361 hypothetical protein; Provisional
Probab=46.50 E-value=31 Score=35.07 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=39.8
Q ss_pred HHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCC
Q 004611 614 AEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGF 687 (742)
Q Consensus 614 ~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl 687 (742)
..+...+.|++++++||...+. .+. .+.....+. ...+++.++++.+.+.||+.++++
T Consensus 153 ~l~~a~~~gi~vv~~SDaH~~~----d~~-~~~~~~~i~-----------~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 153 VARIAREAGAPLVINTDTHAPS----DLI-TYEFARKVA-----------LGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred HHHHHHHhCCcEEEECCCCCHH----HHH-HHHHHHHHH-----------cCCCCCHHHHHHHHHHhHHHHHHh
Confidence 4455677899999999975322 111 122222221 356999999999999999999875
No 178
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=45.93 E-value=54 Score=30.86 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=40.8
Q ss_pred CCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccC------CCceeEeCCCCeeEEEEEEe
Q 004611 146 NHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIA------AGTATRFEPGESKIVKLISI 214 (742)
Q Consensus 146 ~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~------~g~~~rfepg~~~~v~l~~~ 214 (742)
-.|.....|.++|+|++|-.+.-. +.+.|- .+-|-++..+ ....|..+||++-...|--.
T Consensus 16 ~~g~~~~~l~~tN~s~~~C~l~G~-------P~v~~~--~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~ 81 (131)
T PF14016_consen 16 GAGQRHATLTFTNTSDTPCTLYGY-------PGVALV--DADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWS 81 (131)
T ss_pred CCCccEEEEEEEECCCCcEEeccC-------CcEEEE--CCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEe
Confidence 567778999999999999887542 556663 2223322222 45679999999877776544
No 179
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=44.47 E-value=77 Score=33.20 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=49.1
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLIS 213 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~ 213 (742)
+.+.+....|.++++.+.+++.|.|++|.|+-|=|=. .+.+.. ++... =+=.|+ -.|.|||++..|.++.
T Consensus 22 A~v~l~~TRvIy~~~~~~~si~i~N~~~~p~LvQswv--~~~~~~---~~~~p---FivtPP--lfrl~p~~~q~lRI~~ 91 (229)
T PRK15211 22 AAFVLNGTRFIYDEGRKNISFEVTNQADQTYGGQVWI--DNTTQG---SSTVY---MVPAPP--FFKVRPKEKQIIRIMK 91 (229)
T ss_pred EEEEECceEEEEcCCCceEEEEEEeCCCCcEEEEEEE--ecCCCC---CccCC---EEEcCC--eEEECCCCceEEEEEE
Confidence 5588888899999999999999999999997665521 111100 00000 011233 5799999999999986
Q ss_pred ec
Q 004611 214 IG 215 (742)
Q Consensus 214 ~~ 215 (742)
.|
T Consensus 92 ~~ 93 (229)
T PRK15211 92 TD 93 (229)
T ss_pred CC
Confidence 64
No 180
>COG4288 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.71 E-value=25 Score=32.23 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=31.6
Q ss_pred EEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCce
Q 004611 152 VILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTA 198 (742)
Q Consensus 152 ~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~ 198 (742)
=++.|.|+||-|-.|--|+||. ||+..==||+.|+|--+
T Consensus 31 es~cilN~gDe~AkvrI~i~fs--------Dr~pvgpyevevaarrt 69 (124)
T COG4288 31 ESLCILNTGDEPAKVRITILFS--------DREPVGPYEVEVAARRT 69 (124)
T ss_pred ceEEEEecCCCCceEEEEEEec--------cCCCCCceEEEeeccee
Confidence 3688999999999999999986 77777667777776544
No 181
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=39.90 E-value=89 Score=32.63 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=50.5
Q ss_pred CCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEE
Q 004611 133 PGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 133 pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~ 212 (742)
-+.+.+....|.++++...++|.|.|+++.|+-|=|= .+-+.. |-... -.=|..=--.|.|||+...|.++
T Consensus 18 ~A~i~l~~TRvI~~~~~~~~si~i~N~~~~p~LvQsW---v~~~~~---~~~~~---~pFivtPPl~rl~p~~~q~lRI~ 88 (226)
T PRK15295 18 HASIVVGGTRLVFDGNNDESSINVENKDSKANLVQSW---LSVVDP---QVTNK---QAFIITPPLFRLDAGQKNSIRVI 88 (226)
T ss_pred cccEEeCceEEEEeCCCceeEEEEEeCCCCcEEEEEE---EeCCCC---CCCCC---CCEEEcCCeEEECCCCceEEEEE
Confidence 3568888889999999999999999999999776542 221110 10000 00022223689999999999998
Q ss_pred Eec
Q 004611 213 SIG 215 (742)
Q Consensus 213 ~~~ 215 (742)
..+
T Consensus 89 ~~~ 91 (226)
T PRK15295 89 RSG 91 (226)
T ss_pred ECC
Confidence 664
No 182
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=38.27 E-value=1.1e+02 Score=32.35 Aligned_cols=75 Identities=11% Similarity=0.209 Sum_probs=50.4
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCCcceeeccccc----ccccCCccccccccccccccccCCCceeEeCCCCeeEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYH----FIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIV 209 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h----~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v 209 (742)
+.+.+....|.++++.+.++|.|.|++|.|.-|=|..= +.+... +...+- + +=.|. -.|.|||+...+
T Consensus 22 Agi~l~~TRvIy~~~~k~~sv~l~N~~~~p~LvQswv~~~~~w~~~~~----~~~~~P-F-ivtPP--lfrl~p~~~~~l 93 (234)
T PRK15192 22 AGVVIGGTRFIYHAGAPALSVPVSNHSEASWLIDTHILPGGRWPGTKN----EGNITP-F-VVTPP--LFMLSARQENSM 93 (234)
T ss_pred eeEEeCceEEEEcCCCceEEEEEEeCCCCcEEEEEEeccCccccccCC----ccccCC-E-EEcCC--eEEECCCCceEE
Confidence 44788888999999999999999999999977766541 001000 000000 0 11222 579999999999
Q ss_pred EEEEecC
Q 004611 210 KLISIGG 216 (742)
Q Consensus 210 ~l~~~~g 216 (742)
.++..|+
T Consensus 94 RI~~~~~ 100 (234)
T PRK15192 94 RVVYTGA 100 (234)
T ss_pred EEEECCC
Confidence 9997753
No 183
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=37.49 E-value=33 Score=35.65 Aligned_cols=51 Identities=31% Similarity=0.487 Sum_probs=32.1
Q ss_pred CceeeCCCCceEEEEEEeCC-------CcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEE
Q 004611 141 GSITLNHGRKAVILKVVNTG-------DRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIV 209 (742)
Q Consensus 141 ~~~~~~~~~~~~~~~v~n~~-------dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v 209 (742)
.+=.+|.|.-.+.|++-|.. ++||+|-+ =|.+--+|||+-||..|||+-+.
T Consensus 109 ~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~------------------DG~~~t~~aG~~l~L~PGESiTL 166 (225)
T PF07385_consen 109 MEDIINRGGGNLVIELYNSDPDGELDADTDVTVPV------------------DGIRRTVPAGTQLRLNPGESITL 166 (225)
T ss_dssp -EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEE------------------TTEEEEE-TT-EEEE-TT-EEEE
T ss_pred hhheeecCCceEEEEEEeccCCCccccCCCeEEec------------------CCcEEEecCCceEEeCCCCeEee
Confidence 33447888788888888865 35565543 38888899999999999997554
No 184
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=37.47 E-value=40 Score=30.79 Aligned_cols=57 Identities=25% Similarity=0.319 Sum_probs=32.2
Q ss_pred ceEEEEEEeCCCcceeec-ccccccccCCcccccccccccccc----------ccCCCceeEeCCCCeeEEEEE
Q 004611 150 KAVILKVVNTGDRPVQVG-SHYHFIEVNPYLVFDRRKAFGMRL----------NIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 150 ~~~~~~v~n~~dr~~qvg-sh~h~~e~n~~l~f~r~~~~g~~l----------~i~~g~~~rfepg~~~~v~l~ 212 (742)
...+|+++|.||.++..- ||. +++........|+.. ..-+...|.-.||++++|++-
T Consensus 10 ~~~~itl~N~~~~~~ty~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vt 77 (112)
T PF06280_consen 10 FSFTITLHNYGDKPVTYTLSHV------PVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVT 77 (112)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEE-------EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEE
T ss_pred eEEEEEEEECCCCCEEEEEeeE------EEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEE
Confidence 678999999999998632 222 445544433334432 233556788889999998873
No 185
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=37.45 E-value=86 Score=28.50 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=28.4
Q ss_pred eEEEEEEeCCCcceeeccc-ccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEE
Q 004611 151 AVILKVVNTGDRPVQVGSH-YHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 151 ~~~~~v~n~~dr~~qvgsh-~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~ 212 (742)
.+.++|+|+|+-++.+.+- |-+...| .-..+......... .....-...||++.+..||
T Consensus 39 ~v~v~v~N~~~~~~~~~~~~f~l~d~~-g~~~~~~~~~~~~~--~~~~~~~i~pG~~~~g~l~ 98 (123)
T PF11611_consen 39 VVDVTVKNNGDEPLDFSPSDFKLYDSD-GNKYDPDFSASSND--NDLFSETIKPGESVTGKLV 98 (123)
T ss_dssp EEEEEEEE-SSS-EEEEGGGEEEE-TT---B--EEE-CCCTT--TB--EEEE-TT-EEEEEEE
T ss_pred EEEEEEEECCCCcEEecccceEEEeCC-CCEEcccccchhcc--ccccccEECCCCEEEEEEE
Confidence 3789999999999998544 3333222 12222222221111 1155677888888887776
No 186
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=37.21 E-value=1.1e+02 Score=32.19 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=51.7
Q ss_pred CCeeEeCCCceeeCCC-CceEEEEEEeCCCcceeeccccccccc-CCccccccccccccccccCCC------ceeEeCCC
Q 004611 133 PGRIIPGGGSITLNHG-RKAVILKVVNTGDRPVQVGSHYHFIEV-NPYLVFDRRKAFGMRLNIAAG------TATRFEPG 204 (742)
Q Consensus 133 pg~~~~~~~~~~~~~~-~~~~~~~v~n~~dr~~qvgsh~h~~e~-n~~l~f~r~~~~g~~l~i~~g------~~~rfepg 204 (742)
-+.+.+.+=.++|+++ .+...++|.|+||.|..|--- .++. ||...=.++..-+ ..|.+ .-+..+||
T Consensus 15 aa~l~V~Pi~~~i~a~~~~~~~v~V~N~g~~~~~vqV~--v~r~~~PG~~~e~~~~~~---~~~~~eLiaSP~~l~L~pg 89 (234)
T PRK15308 15 RANMLVYPMAAEIGAGREEATSLFVYSKSDHTQYVRTR--IKRIEHPATPQEKEVPAG---NDIETGLVVSPEKFALPAG 89 (234)
T ss_pred hceEEEEEeEEEecCCCcceEEEEEEeCCCCcEEEEEE--EEEEcCCCCCCCcccccc---cCCCCcEEEcCceeEECCC
Confidence 5678888888999998 888999999999999766432 2222 4433222221100 12333 23566889
Q ss_pred CeeEEEEEEecC
Q 004611 205 ESKIVKLISIGG 216 (742)
Q Consensus 205 ~~~~v~l~~~~g 216 (742)
+++.|.|+..|-
T Consensus 90 ~~q~IRli~lg~ 101 (234)
T PRK15308 90 TTRTVRVISLQA 101 (234)
T ss_pred CeEEEEEEEcCC
Confidence 999999998883
No 187
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=36.40 E-value=1e+02 Score=28.96 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=42.0
Q ss_pred eeeCCCC-ceEEEEEEeCCCcceeecccccccccCC--cccc-------cccccc--ccccccCCCceeEeCCCCeeEEE
Q 004611 143 ITLNHGR-KAVILKVVNTGDRPVQVGSHYHFIEVNP--YLVF-------DRRKAF--GMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 143 ~~~~~~~-~~~~~~v~n~~dr~~qvgsh~h~~e~n~--~l~f-------~r~~~~--g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
+.+++|. ..+++.|.|.+|.+|.|-.-.+=.=+|. ...+ |....| +-=..+|.- |.-.|+++|+|+
T Consensus 21 L~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~--Vtl~~~~sk~V~ 98 (121)
T PF06030_consen 21 LKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKE--VTLPPNESKTVT 98 (121)
T ss_pred EEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcE--EEECCCCEEEEE
Confidence 5555555 5689999999999998864333222332 2233 222222 222344544 999999999998
Q ss_pred EE
Q 004611 211 LI 212 (742)
Q Consensus 211 l~ 212 (742)
+-
T Consensus 99 ~~ 100 (121)
T PF06030_consen 99 FT 100 (121)
T ss_pred EE
Confidence 74
No 188
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=35.01 E-value=71 Score=29.67 Aligned_cols=59 Identities=27% Similarity=0.432 Sum_probs=39.4
Q ss_pred eeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEEE
Q 004611 143 ITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLIS 213 (742)
Q Consensus 143 ~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~ 213 (742)
|.++.| ++++|.|+|..+.|..| |+|=+.....-.-|- .|..+.--..||++++.+...
T Consensus 28 I~v~~G-d~v~i~~~N~l~~~~si--H~HG~~~~~~~~~DG---------~~~~~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 28 IRVREG-DTVRITVTNNLDEPTSI--HWHGLHQPPSPWMDG---------VPGVTQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEETT-EEEEEEEEEESSSGBSE--EEETSBSTTGGGGSG---------GTTTSGSSBSTTEEEEEEEEE
T ss_pred EEEEcC-CeeEEEEEecccccccc--ccceeeeeeeeecCC---------cccccceeEEeecceeeeEee
Confidence 566666 67999999999988655 888777665522232 233344556777777776554
No 189
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=33.23 E-value=4.4e+02 Score=28.55 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEcC
Q 004611 497 AAIDNCLTVAEEYDIQVNIHTD 518 (742)
Q Consensus 497 ~~l~~~l~~A~e~g~~v~iH~d 518 (742)
...++.++...++|+++.++++
T Consensus 124 ~~~r~~~~rL~~~gl~fdl~~~ 145 (279)
T COG3618 124 PAWRANVERLAKLGLHFDLQVD 145 (279)
T ss_pred HHHHHHHHHHHhcCCeEEEEeC
Confidence 5666777777777777777664
No 190
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=31.74 E-value=1.2e+02 Score=27.03 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=39.5
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLIS 213 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~ 213 (742)
|++.+.+..|++.+|. ++ +.+|.+..| |-..++... ++-.....+. .+. .+.+..+||++.+++..+
T Consensus 10 g~~~F~P~~i~v~~G~-~V--~~~N~~~~~-----H~~~~~~~~---~~~~~~~~~~-~~~-~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 10 GALVFEPAKISIAAGD-TV--EWVNNKGGP-----HNVVFDEDA---VPAGVKELAK-SLS-HKDLLNSPGESYEVTFST 76 (99)
T ss_pred CceeEeCCEEEECCCC-EE--EEEECCCCC-----ceEEECCCC---Cccchhhhcc-ccc-ccccccCCCCEEEEEeCC
Confidence 6688888999999996 34 455886433 433333211 1111100000 111 145778999999998776
Q ss_pred ecCc
Q 004611 214 IGGR 217 (742)
Q Consensus 214 ~~g~ 217 (742)
.|.
T Consensus 77 -~G~ 79 (99)
T TIGR02656 77 -PGT 79 (99)
T ss_pred -CEE
Confidence 443
No 191
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.93 E-value=1.4e+02 Score=31.28 Aligned_cols=73 Identities=22% Similarity=0.395 Sum_probs=52.3
Q ss_pred CCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccc-cccccccc-cCCCceeEeCCCCeeEEE
Q 004611 133 PGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRR-KAFGMRLN-IAAGTATRFEPGESKIVK 210 (742)
Q Consensus 133 pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~-~~~g~~l~-i~~g~~~rfepg~~~~v~ 210 (742)
-+.+.+..-.|.++++.+...|.|.|+++.|+=|=|... +. ...-..-+ |+.=--+|-|||+...|.
T Consensus 26 ~A~v~i~~TRiI~~~~~k~~sl~l~N~~~~p~LvQ~wvd-----------~~~~~~~~~~pfvvtPPv~rl~p~~~q~vR 94 (235)
T COG3121 26 AAGVVLGGTRIIYPAGDKETSLTLRNDGNQPYLVQSWVD-----------DGLEPEKSTVPFVVTPPVFRLEPGQEQQLR 94 (235)
T ss_pred eeeEEecceEEEEeCCCceeEEEEEcCCCCCEEEEEEEc-----------CCCCCccccCCEEecCCeEEECCCCccEEE
Confidence 345677777899999999999999999999987765432 21 11111111 333346899999999999
Q ss_pred EEEecC
Q 004611 211 LISIGG 216 (742)
Q Consensus 211 l~~~~g 216 (742)
++-.|+
T Consensus 95 i~~~~~ 100 (235)
T COG3121 95 ILYTGN 100 (235)
T ss_pred EEecCC
Confidence 998875
No 192
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=30.52 E-value=2.1e+02 Score=30.08 Aligned_cols=78 Identities=13% Similarity=0.222 Sum_probs=51.0
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLIS 213 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~ 213 (742)
..+.+....|.++++...+++.|.|+++.|.-|=|-.- ....--..|-.+.-.-=+=.|. -.|.|||++..+.++.
T Consensus 26 A~v~l~~TRvIy~~~~~~~sv~l~N~~~~p~LvQswv~--~~~~~~~~~~~~~~~pFivtPP--lfrl~p~~~q~lRIi~ 101 (236)
T PRK11385 26 AGVVVGGTRFIFPADRESISILLTNTSQESWLINSKIN--RPTRWAGGEASTVPAPLLAAPP--LILLKPGTTGTLRLLR 101 (236)
T ss_pred eeEEeCceEEEEcCCCceEEEEEEeCCCCcEEEEEEcc--cCccccCcccccccCCEEEcCC--eEEECCCCceEEEEEE
Confidence 56788888999999999999999999999977766431 0000001111100000012233 5799999999999997
Q ss_pred ec
Q 004611 214 IG 215 (742)
Q Consensus 214 ~~ 215 (742)
.+
T Consensus 102 ~~ 103 (236)
T PRK11385 102 TE 103 (236)
T ss_pred CC
Confidence 65
No 193
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=30.16 E-value=57 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=16.3
Q ss_pred CCCCCCCCceEEEECCEEEeccC
Q 004611 706 KPSFFGAKPEMVIKGGAIAWANM 728 (742)
Q Consensus 706 Dp~~~~~~p~~Vi~~G~iV~~~~ 728 (742)
+|.....-+.+||+||++++.+.
T Consensus 12 ~p~~~~~GI~~V~VNG~~vv~~g 34 (48)
T PF07908_consen 12 DPNQPAEGIDYVFVNGQIVVEDG 34 (48)
T ss_dssp STT---BSEEEEEETTEEEECTT
T ss_pred cccccCCCEEEEEECCEEEEECC
Confidence 34445667899999999999754
No 194
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=29.66 E-value=38 Score=25.95 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.7
Q ss_pred EEEEeCCCcceeecc
Q 004611 154 LKVVNTGDRPVQVGS 168 (742)
Q Consensus 154 ~~v~n~~dr~~qvgs 168 (742)
.+++|+|+.|++|-+
T Consensus 2 F~~~N~g~~~L~I~~ 16 (45)
T PF07610_consen 2 FEFTNTGDSPLVITD 16 (45)
T ss_pred EEEEECCCCcEEEEE
Confidence 678999999998854
No 195
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=28.62 E-value=51 Score=34.00 Aligned_cols=74 Identities=31% Similarity=0.429 Sum_probs=47.8
Q ss_pred hHHHHHHH-HhcCceeEeccCCC---CCHHHH-HHHHHHHHHcCCEEEEEcC-C--------CccchHHHHHHHHhcCCe
Q 004611 472 PDELHEII-KAGAMGLKLHEDWG---STPAAI-DNCLTVAEEYDIQVNIHTD-T--------LNESGFVEHTIAAFKGRT 537 (742)
Q Consensus 472 ~~~l~e~i-~aGa~glkl~~d~~---~t~~~l-~~~l~~A~e~g~~v~iH~d-t--------lne~g~ve~~l~a~~g~~ 537 (742)
.+.+++.+ +.|..|++++.... .....+ +..++.|.++|+++.+|+. . ......+...+..+.+..
T Consensus 87 ~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P~l~ 166 (273)
T PF04909_consen 87 VEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLERFPDLR 166 (273)
T ss_dssp HHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHHHSTTSE
T ss_pred HHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHHHhcCCe
Confidence 44555555 57888999888653 333444 4899999999999999953 0 000112344566777888
Q ss_pred EEEEeccc
Q 004611 538 IHTYHSEG 545 (742)
Q Consensus 538 ih~~H~~g 545 (742)
+-..|..+
T Consensus 167 ii~~H~G~ 174 (273)
T PF04909_consen 167 IILAHLGG 174 (273)
T ss_dssp EEESGGGT
T ss_pred EEEecCcc
Confidence 88888654
No 196
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=27.34 E-value=1.9e+02 Score=30.02 Aligned_cols=68 Identities=7% Similarity=-0.016 Sum_probs=43.9
Q ss_pred HHHHHHHCCCeEEEecCCCccCccchhhhhhhhhhhhhhhhccccCCCcccCCCCcHHHHHHHHHHHHHHHcCCC-CCcc
Q 004611 614 AEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFS-QFVG 692 (742)
Q Consensus 614 ~~~~L~d~Gv~~~lgSDs~a~gr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~-d~vG 692 (742)
......+.|++++++||+..+..+ +.+.....+. ...|++.++++.+.+.+|.+++... .+.+
T Consensus 159 ~~~~~~~~g~piiisSdAh~~~~l-----~~~~~~~~l~-----------~~~Gl~~~~~~~~~~~~~~~i~~~~~~~~~ 222 (237)
T PRK00912 159 NLALARKYDFPLVLTSGAMSCYDL-----RSPREMIALA-----------ELFGMEEDEALKALSYYPESIIKKNRNRKN 222 (237)
T ss_pred HHHHHHhcCCCEEEeCCCCccccc-----CCHHHHHHHH-----------HHcCCCHHHHHHHHHHhHHHHHHhhccCCC
Confidence 455667789999999997654322 1111111121 2348999999999999999988764 2234
Q ss_pred cccCC
Q 004611 693 SVEVG 697 (742)
Q Consensus 693 SIe~G 697 (742)
.|..|
T Consensus 223 ~~~~~ 227 (237)
T PRK00912 223 YVIEG 227 (237)
T ss_pred ccccc
Confidence 44444
No 197
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=27.25 E-value=69 Score=34.03 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=50.3
Q ss_pred CCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccC-CccccccccccccccccCCCceeEeCCCCeeEEEE
Q 004611 133 PGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVN-PYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKL 211 (742)
Q Consensus 133 pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n-~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l 211 (742)
-+.+.+....|.++++.+.++|.|.|+||+|+-|=| ..|-+ ..+.=+....- -=+=.|. -.|.|||+...|.+
T Consensus 27 ~A~l~l~~TRviy~~~~~~~sl~l~N~~~~p~LvQs---Wv~~~~~~~~p~~~~~~-pFivtPP--lfrl~p~~~q~lRI 100 (253)
T PRK15249 27 WASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQT---WFDDGDMNTSPENSSAM-PFIATPP--VFRIQPKAGQVVRV 100 (253)
T ss_pred eeEEEeCceEEEEeCCCcceeEEEEcCCCCcEEEEE---EEeCCCCCCCccccccC-cEEEcCC--eEEecCCCceEEEE
Confidence 466888888999999999999999999999987765 22311 11100000000 0011122 57999999999999
Q ss_pred EEec
Q 004611 212 ISIG 215 (742)
Q Consensus 212 ~~~~ 215 (742)
+..|
T Consensus 101 ~~~~ 104 (253)
T PRK15249 101 IYNN 104 (253)
T ss_pred EEcC
Confidence 8654
No 198
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=27.24 E-value=2.2e+02 Score=30.04 Aligned_cols=72 Identities=15% Similarity=0.303 Sum_probs=50.1
Q ss_pred CCeeEeCCCceeeCCCCceEEEEEEeCCC-cceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEE
Q 004611 133 PGRIIPGGGSITLNHGRKAVILKVVNTGD-RPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKL 211 (742)
Q Consensus 133 pg~~~~~~~~~~~~~~~~~~~~~v~n~~d-r~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l 211 (742)
-+.+.+....|.++++...+++.|.|+++ .|+-|=|- .|-. |-..+--+ +=.|. -.|.|||++..|.+
T Consensus 15 ~A~v~l~~TRvIy~~~~~~~sv~v~N~~~~~p~LvQsW---v~d~-----~~~~~~pF-ivtPP--lfrl~p~~~~~lRI 83 (239)
T PRK15254 15 PAAVNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSW---VTDA-----DGVRTDAL-MALPP--LQRIDAGQKSQVRI 83 (239)
T ss_pred eEeEEECceEEEEeCCCceEEEEEEeCCCCCcEEEEEE---EecC-----CCCCcCCE-EEcCC--eEEECCCCceEEEE
Confidence 46688888899999999999999999986 59877763 2311 11111000 11233 67999999999999
Q ss_pred EEec
Q 004611 212 ISIG 215 (742)
Q Consensus 212 ~~~~ 215 (742)
+..+
T Consensus 84 ~~~~ 87 (239)
T PRK15254 84 TQVR 87 (239)
T ss_pred EEcc
Confidence 8664
No 199
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=26.72 E-value=80 Score=32.94 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=50.0
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccc-cCCCceeEeCCCCeeEEEEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLN-IAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~-i~~g~~~rfepg~~~~v~l~ 212 (742)
+.+.+....|.++++.+.++|.|.|.|++|+-|=|= .+.+.. |.. ....+ |..=--.|.|||++..+.++
T Consensus 22 a~i~l~~TRvi~~~~~~~~sl~l~N~~~~p~lvQsW---v~~~~~---~~~---~~~~pfivtPPl~rl~p~~~q~lRI~ 92 (227)
T PRK15299 22 AGINIGTTRVIFHGDAKDASISISNSDNVPYLIQSW---AQSISE---TGA---SGDAPFMVTPPLFRLNGGQKNVLRII 92 (227)
T ss_pred eeEEECceEEEEeCCCcEEEEEEEeCCCCcEEEEEE---eecCCC---CCC---cCCCCEEEcCCeEEECCCCccEEEEE
Confidence 568888889999999999999999999999766542 222111 110 00111 12222679999999999998
Q ss_pred Eec
Q 004611 213 SIG 215 (742)
Q Consensus 213 ~~~ 215 (742)
..|
T Consensus 93 ~~~ 95 (227)
T PRK15299 93 RTG 95 (227)
T ss_pred ECC
Confidence 664
No 200
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=26.65 E-value=38 Score=35.78 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=24.9
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhcccCCcHH
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYT 33 (742)
Q Consensus 1 m~~~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~ 33 (742)
|.+||.|+..++++|.+.|..-=+..|.+|+|-
T Consensus 75 m~~s~~el~~~v~yQigaL~~~a~~~g~~l~hV 107 (242)
T PF03746_consen 75 MDISPEELRDSVLYQIGALQAIAAAEGVPLHHV 107 (242)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTT--EEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEe
Confidence 789999999999999999999999999999874
No 201
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=26.39 E-value=96 Score=32.55 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=56.6
Q ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcccccc--CCCcCCChhhcccceeeeeecCCCcee
Q 004611 17 GYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILG--RRQVLPAVPHLLDTVQVEGTFPDGTKL 93 (742)
Q Consensus 17 ~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~--~~~v~~~v~~~~~~~~ve~~f~~g~~l 93 (742)
..+.+-++.+|+-|--||.+-=+-=--+|..-||+..++.-|..-.++|. -+|+++..-+.++ +.-|..||-|++.
T Consensus 122 ~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~-~k~qLiY~~G~q~ 199 (229)
T PF12340_consen 122 QLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS-VKYQLIYTMGSQQ 199 (229)
T ss_pred HHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC-cceEEEecCCCcc
Confidence 34445667999999999975333333356677885556666666666665 4699999999999 9999999999875
No 202
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=26.10 E-value=3.3e+02 Score=23.76 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=44.1
Q ss_pred CCeeEeCCCceeeCCCCceEEEEEEeCCCc--ceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeE
Q 004611 133 PGRIIPGGGSITLNHGRKAVILKVVNTGDR--PVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKI 208 (742)
Q Consensus 133 pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr--~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~ 208 (742)
||.+.+.......+++...++|.|.=+|+- |++|. |-- -|..+.-|.-. .|.-..|.|+||++..
T Consensus 1 ~g~v~F~~~~~~V~E~~g~~~v~V~R~g~~~~~~~V~--~~t--------~~gtA~~g~Dy-~~~~g~l~F~~ge~~k 67 (90)
T smart00237 1 AGTVGFEQPVYTVSESDGEVEVCVVRTGGARGTVVVP--YRT--------EDGTATAGSDY-EPVEGTLTFPPGETEK 67 (90)
T ss_pred CeEEEECCCeEEEEECCeEEEEEEEecCCCCcEEEEE--EEE--------cCCcCCCCCCc-cccceEEEECCCCEEE
Confidence 678888888899999988888888877764 55543 322 12334444333 3456789999999543
No 203
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.15 E-value=5.3e+02 Score=28.12 Aligned_cols=51 Identities=22% Similarity=0.220 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEcC-CCc-c--chHHHHHH--H--HhcCCeEEEEeccc
Q 004611 495 TPAAIDNCLTVAEEYDIQVNIHTD-TLN-E--SGFVEHTI--A--AFKGRTIHTYHSEG 545 (742)
Q Consensus 495 t~~~l~~~l~~A~e~g~~v~iH~d-tln-e--~g~ve~~l--~--a~~g~~ih~~H~~g 545 (742)
+-+...++.+-++++|+.|+.|.- .+. | ..+++... . ...|..+|..|..-
T Consensus 166 d~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~Lhvvk 224 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVK 224 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEec
Confidence 345566777888999999999981 111 1 11222221 1 23577899999864
No 204
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=25.13 E-value=2.4e+02 Score=27.82 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=43.2
Q ss_pred CCCeeEeCCCceeeCCCCc-eEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEE
Q 004611 132 VPGRIIPGGGSITLNHGRK-AVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 132 ~pg~~~~~~~~~~~~~~~~-~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
.|=+..+....|.+.+|-. .+.-.++|..|+||---+=|...=...+.-|..-.-|=+. -=++.|||+++..
T Consensus 50 lpW~F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A~~nV~P~~a~~YF~KieCFCF~-------eQ~L~pgE~~~mP 122 (152)
T PF04442_consen 50 LPWEFKPEQRSVKVHPGETALVFYEATNPSDKPITGQAIPNVTPGEAGKYFNKIECFCFE-------EQTLAPGETVDMP 122 (152)
T ss_dssp S-EEEE-S-SEEEEETT--EEEEEEEEE-SSS-EE---EEEE-SSS-STTECCS-TTS-S---------EE-TT-EEEEE
T ss_pred CceEEEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEEEeeeECHHHhhhhccccceEecc-------CcCcCCCCeEEEE
Confidence 3666777777777777763 4678999999999988888877766777777666655542 3467899999988
Q ss_pred EEE
Q 004611 211 LIS 213 (742)
Q Consensus 211 l~~ 213 (742)
|+=
T Consensus 123 v~F 125 (152)
T PF04442_consen 123 VVF 125 (152)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 205
>PRK02710 plastocyanin; Provisional
Probab=24.50 E-value=2.1e+02 Score=26.50 Aligned_cols=57 Identities=28% Similarity=0.372 Sum_probs=37.8
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLIS 213 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~ 213 (742)
|++.+.+..|++.+|. + ++.+|.++.|-.+ .|| |. +--+.+...++||++.+++..+
T Consensus 40 ~~~~F~P~~i~v~~Gd-~--V~~~N~~~~~H~v-------------~~~-----~~--~~~~~~~~~~~pg~t~~~tF~~ 96 (119)
T PRK02710 40 GMLAFEPSTLTIKAGD-T--VKWVNNKLAPHNA-------------VFD-----GA--KELSHKDLAFAPGESWEETFSE 96 (119)
T ss_pred CeeEEeCCEEEEcCCC-E--EEEEECCCCCceE-------------Eec-----CC--ccccccccccCCCCEEEEEecC
Confidence 5677788889999996 3 4567888765333 122 11 1113456778999999988877
No 206
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=24.24 E-value=2.4e+02 Score=29.75 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=48.4
Q ss_pred CCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEE
Q 004611 133 PGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 133 pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~ 212 (742)
-+.+.+....|.+|++.+.++|.|.|+++.|.=|=|- .|- .|-...-=+ |-.=--.|.|||+...+.++
T Consensus 27 ~agv~l~~TRvIy~~~~k~~sl~v~N~~~~pyLvQsW---vd~-----~~~~~~~pF---ivtPPlfRlep~~~~~lRI~ 95 (237)
T PRK15224 27 SFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSS---VKA-----ADKSSPAPF---LVMPPLFRLEANQQSQLRIV 95 (237)
T ss_pred eEEEEeCceEEEEeCCCcEEEEEEEcCCCCcEEEEEE---EeC-----CCCCccCCE---EECCCeEEECCCCceEEEEE
Confidence 4567888889999999999999999999999655442 221 011100000 01111358999999999999
Q ss_pred Eec
Q 004611 213 SIG 215 (742)
Q Consensus 213 ~~~ 215 (742)
..|
T Consensus 96 ~~~ 98 (237)
T PRK15224 96 RTG 98 (237)
T ss_pred ECC
Confidence 764
No 207
>PF08428 Rib: Rib/alpha-like repeat; InterPro: IPR012706 This entry represents a region of about 79 amino acids found tandemly repeated up to fourteen times within the proteins that contain it. The repeats lack cysteines and are highly conserved, even at the DNA level, within and between proteins []. Proteins containing these repeats include the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis (Streptococcus faecalis), and related proteins of Lactobacillus. Most members of this protein family also have the cell wall anchor motif, LPXTG, shared by many staphyloccal and streptococcal surface antigens. These repeats are thought to define protective epitopes and may play a role in generating phenotypic and genotypic variation [].
Probab=24.22 E-value=45 Score=27.80 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=12.3
Q ss_pred cceeeeeecCCCce
Q 004611 79 DTVQVEGTFPDGTK 92 (742)
Q Consensus 79 ~~~~ve~~f~~g~~ 92 (742)
....|+.|||||++
T Consensus 41 ~~~~V~VtypDgS~ 54 (65)
T PF08428_consen 41 KTGKVKVTYPDGST 54 (65)
T ss_pred EEEEEEEEcCCCCE
Confidence 47889999999986
No 208
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.13 E-value=1e+02 Score=30.95 Aligned_cols=66 Identities=26% Similarity=0.260 Sum_probs=45.1
Q ss_pred CCCCccchhhhhH---------HHHHHHH---HHHhhc----ccCCcHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcccc
Q 004611 1 MKLTPREAEKLGL---------HNAGYLA---QKRLAR----GLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQI 64 (742)
Q Consensus 1 m~~~~~~~~~l~~---------~~~~~~a---~~~~~~----g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~ 64 (742)
|+||+.|...-+= .+-|.=+ +.|... ++||+-|| +|||+.-++-++ .|.-||...+..|
T Consensus 48 mnLse~eVq~~l~~L~~r~lvr~~sgsRv~kyehrfcnsefgdlkl~~~e-vali~lLlLRGa----QTpgELrtRanRm 122 (215)
T COG3132 48 MNLSESEVQEQLDNLEKRHLVRTVSGSRVTKYEHRFCNSEFGDLKLSAAE-VALITLLLLRGA----QTPGELRTRANRM 122 (215)
T ss_pred hcCCHHHHHHHHHHHHHhhhHHHhhcchHHHHHHHHhhccccceeechHH-HHHHHHHHHcCC----CChhHHHHHHHhh
Confidence 7888887654322 1222222 234455 89999998 789998666433 5888999999999
Q ss_pred ccCCCcC
Q 004611 65 LGRRQVL 71 (742)
Q Consensus 65 l~~~~v~ 71 (742)
-.-+||-
T Consensus 123 ~~Fsdv~ 129 (215)
T COG3132 123 YEFSDVA 129 (215)
T ss_pred hccchHH
Confidence 8888874
No 209
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=24.05 E-value=1e+02 Score=38.14 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCceEEEEEEeCCCcc----eeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEE
Q 004611 148 GRKAVILKVVNTGDRP----VQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKL 211 (742)
Q Consensus 148 ~~~~~~~~v~n~~dr~----~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l 211 (742)
+.-+++++|+|||+|+ ||+--..-. .....-...=.| =+-|..+|||+|+|++
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~----~~~~~P~k~L~g-------F~Kv~L~pGes~~V~~ 723 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVT----ASMSRPVKELKG-------FEKIMLKPGETQTVSF 723 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCC----CCCCCHHHhccC-------ceeEeECCCCeEEEEE
Confidence 3456889999999997 666543221 111111111111 1346788999999985
No 210
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=23.45 E-value=2.6e+02 Score=29.12 Aligned_cols=70 Identities=14% Similarity=0.282 Sum_probs=48.7
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCC-cceeecccccccccCCccccccccccccccc-cCCCceeEeCCCCeeEEEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGD-RPVQVGSHYHFIEVNPYLVFDRRKAFGMRLN-IAAGTATRFEPGESKIVKL 211 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~d-r~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~-i~~g~~~rfepg~~~~v~l 211 (742)
+.+.+....|.++++.+.++|.|.|+++ .|.-|=|-. +.+. -.. ..+ |..=--.|.|||+...|.+
T Consensus 21 agv~l~~TRvI~~~~~~~~si~i~N~~~~~~~LvQsWv---~~~~-----~~~----~~pfivtPPl~rl~p~~~q~lRI 88 (228)
T PRK15208 21 GGVALSSTRVIYDGSKKEASLTVNNKSKTEEFLIQSWI---DDAN-----GNK----KTPFIITPPLFKLDPTKNNVLRI 88 (228)
T ss_pred ccEEeCceEEEEeCCCceEEEEEEeCCCCCcEEEEEEE---ECCC-----CCc----cCCEEECCCeEEECCCCccEEEE
Confidence 4578888899999999999999999996 677664422 2211 011 111 2222367999999999999
Q ss_pred EEec
Q 004611 212 ISIG 215 (742)
Q Consensus 212 ~~~~ 215 (742)
+..+
T Consensus 89 i~~~ 92 (228)
T PRK15208 89 VNIT 92 (228)
T ss_pred EECC
Confidence 8664
No 211
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=22.86 E-value=1.8e+02 Score=25.64 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=38.3
Q ss_pred CCeeEeCCCceeeCCCCceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEE
Q 004611 133 PGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 133 pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~ 212 (742)
|-++.+ |.+.++.- ...+|.++|+|..|. +||+...+ .+. .-++..-+.|. -.||++.++++.
T Consensus 8 P~~ldF--G~v~~g~~-~~~~v~l~N~s~~p~----~f~v~~~~-~~~------~~~~v~~~~g~---l~PG~~~~~~V~ 70 (102)
T PF14874_consen 8 PKELDF--GNVFVGQT-YSRTVTLTNTSSIPA----RFRVRQPE-SLS------SFFSVEPPSGF---LAPGESVELEVT 70 (102)
T ss_pred CCEEEe--eEEccCCE-EEEEEEEEECCCCCE----EEEEEeCC-cCC------CCEEEECCCCE---ECCCCEEEEEEE
Confidence 445555 45555444 358999999999996 45543322 111 12344444553 788888877766
Q ss_pred Ee
Q 004611 213 SI 214 (742)
Q Consensus 213 ~~ 214 (742)
=.
T Consensus 71 ~~ 72 (102)
T PF14874_consen 71 FS 72 (102)
T ss_pred EE
Confidence 55
No 212
>PF15016 DUF4520: Domain of unknown function (DUF4520)
Probab=22.43 E-value=63 Score=28.65 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=21.5
Q ss_pred CCChhhcccceeeeeecCCCc-eeEEeecC
Q 004611 71 LPAVPHLLDTVQVEGTFPDGT-KLITIHDP 99 (742)
Q Consensus 71 ~~~v~~~~~~~~ve~~f~~g~-~l~~~~~p 99 (742)
+.++-+-...-++..+||||+ .||++.+|
T Consensus 39 ~~~~~~~~~~~~c~l~~pDG~~~~i~i~~p 68 (85)
T PF15016_consen 39 IWNFSSREELGWCKLTFPDGQQVLIQIEHP 68 (85)
T ss_pred EeCCCCcccCCEEEEEccCCCEEEEEccCC
Confidence 445555557778899999997 47888887
No 213
>PF09890 DUF2117: Uncharacterized protein conserved in archaea (DUF2117); InterPro: IPR012032 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.26 E-value=1.6e+02 Score=30.64 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=49.7
Q ss_pred ccccCCCccccccccccCCCCCCCcccEEEEecEEEcCCCceeeEEEEECCEEEEEecCCCCCcccCCCCccccCCCceE
Q 004611 309 ECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEV 388 (742)
Q Consensus 309 e~~~g~gk~~r~~~~~~~~~~~~~~~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teV 388 (742)
.+.-|.+++.|.-.|...+. -++.|+.|+-...-.+..|..+||+|+.|--. ..+ .-|+ . --.-
T Consensus 84 ~~~~~~~~v~R~i~Gv~pGE-------~I~VNGiVIG~A~s~~V~lvae~G~i~~I~Gg-~iK-~hGv----E---KL~~ 147 (215)
T PF09890_consen 84 NCWEGKGRVFRKISGVSPGE-------NIFVNGIVIGRATSSEVTLVAENGKIVDIIGG-EIK-EHGV----E---KLGK 147 (215)
T ss_pred ccccCCceEEEEEeccCCCC-------CEEEeeEEEEEEcCCeEEEEEeCCEEEEEECe-Eec-hhhh----h---hccC
Confidence 33445568889988887654 38999999863333445678899999998642 111 0111 0 1112
Q ss_pred EecCCCEEeecceeecc
Q 004611 389 IAGERFIVTAGAIDCHV 405 (742)
Q Consensus 389 IDa~G~iVtPGfID~Hv 405 (742)
+|++..+|=-|.+=-|.
T Consensus 148 vDL~~A~iKTG~lRr~~ 164 (215)
T PF09890_consen 148 VDLEKAWIKTGLLRRSP 164 (215)
T ss_pred CChhheEEeccccccCC
Confidence 67777777777655544
No 214
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=21.85 E-value=93 Score=26.88 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=26.1
Q ss_pred ceEEEEEEeCCCcceeecccccccccCCccccccccccccccccCCCcee-EeCCCCeeEEEEEEe
Q 004611 150 KAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTAT-RFEPGESKIVKLISI 214 (742)
Q Consensus 150 ~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~-rfepg~~~~v~l~~~ 214 (742)
-+++++|+|.|+.+.. ..-.+|+. |.... +...| .++||++++|++--.
T Consensus 21 ~~i~~~V~N~G~~~~~-~~~v~~~~-------~~~~~--------~~~~i~~L~~g~~~~v~~~~~ 70 (101)
T PF07705_consen 21 VTITVTVKNNGTADAE-NVTVRLYL-------DGNSV--------STVTIPSLAPGESETVTFTWT 70 (101)
T ss_dssp EEEEEEEEE-SSS-BE-EEEEEEEE-------TTEEE--------EEEEESEB-TTEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCC-CEEEEEEE-------CCcee--------ccEEECCcCCCcEEEEEEEEE
Confidence 3588999999998732 12223332 22211 23334 778888888876543
No 215
>PF12044 Metallopep: Putative peptidase family; InterPro: IPR021917 This family of proteins is functionally uncharacterised. However, it does contain an HEXXH motif characteristic of metallopeptidases. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 625 to 773 amino acids in length.
Probab=21.38 E-value=55 Score=37.43 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=26.1
Q ss_pred eecCCCceeEEeecCccCCCCchhhhhccCC
Q 004611 85 GTFPDGTKLITIHDPIASENGNLELALHGSF 115 (742)
Q Consensus 85 ~~f~~g~~l~~~~~p~~~~~~~~~~~~~~~~ 115 (742)
..|.--+++++=|-++....++|.|||+||-
T Consensus 242 th~d~~~~~i~gHAALGgG~~~~~LAiFGSh 272 (423)
T PF12044_consen 242 THYDPKSNLITGHAALGGGGGDIKLAIFGSH 272 (423)
T ss_pred cCCCcccCccccccccccCCCCeeEEEeccc
Confidence 3444467799999999999999999999993
No 216
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=21.13 E-value=3.3e+02 Score=28.51 Aligned_cols=71 Identities=17% Similarity=0.343 Sum_probs=47.3
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCCc-ceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGDR-PVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~dr-~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~ 212 (742)
+.+.+....|.++++.+.+++.|+|+++. |.=|=|- .|.. |...+--+ .=.|. -.|.|||+++.+.++
T Consensus 27 Agi~l~~TRvIy~~~~~~~sv~i~N~~~~~p~LvQsW---v~~~-----~~~~~~pF-ivtPP--lfrl~~~~~~~lRI~ 95 (228)
T PRK15188 27 GGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSW---VANA-----DGSRSTDF-IITPP--LFVIQPKKENILRIM 95 (228)
T ss_pred ceEEECcEEEEEcCCCceEEEEEEeCCCCccEEEEEE---EecC-----CCCccCCE-EEcCC--eEEECCCCceEEEEE
Confidence 56888888999999999999999999965 4433332 2211 11111000 11222 579999999999998
Q ss_pred Eec
Q 004611 213 SIG 215 (742)
Q Consensus 213 ~~~ 215 (742)
..|
T Consensus 96 ~~~ 98 (228)
T PRK15188 96 YVG 98 (228)
T ss_pred ECC
Confidence 664
No 217
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=20.80 E-value=2.9e+02 Score=28.93 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=47.5
Q ss_pred CeeEeCCCceeeCCCCceEEEEEEeCCCc-ceeecccccccccCCccccccccccccccccCCCceeEeCCCCeeEEEEE
Q 004611 134 GRIIPGGGSITLNHGRKAVILKVVNTGDR-PVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLI 212 (742)
Q Consensus 134 g~~~~~~~~~~~~~~~~~~~~~v~n~~dr-~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~ 212 (742)
+.+.+....|.++++.+.+++.|.|+++. |.=|=|-. |. .|.... .-=|+.=--.|.|||+.+.|.++
T Consensus 25 Agi~i~~TRvIy~~~~~~~si~l~N~~~~~~~LvQsWv---~~-----~~~~~~---~pfivtPPlfrl~p~~~q~lRIi 93 (229)
T PRK15195 25 GGIALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWI---EN-----SSGVKE---KSFIVTPPLFVSEPKSENTLRII 93 (229)
T ss_pred eeEEECCeEEEEeCCCceEEEEEEeCCCCccEEEEEEe---cC-----CCCCcc---CCEEEcCCeEEECCCCceEEEEE
Confidence 45788888999999999999999999976 44333322 21 111111 11122223689999999999998
Q ss_pred Eec
Q 004611 213 SIG 215 (742)
Q Consensus 213 ~~~ 215 (742)
..+
T Consensus 94 ~~~ 96 (229)
T PRK15195 94 YAG 96 (229)
T ss_pred ECC
Confidence 654
No 218
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=20.64 E-value=1.2e+03 Score=25.83 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=18.7
Q ss_pred cCCCCcHHHHHHHHHHHHHHHcCCC
Q 004611 664 DNDNLRIRRYIAKYTINPAIANGFS 688 (742)
Q Consensus 664 ~~~gl~~~~aL~~aTiNpA~~lGl~ 688 (742)
...|++-+..=.++--|||+.|..+
T Consensus 291 k~~Gvde~~i~~mlvdNP~r~f~~~ 315 (316)
T COG1735 291 KRHGVDEETIDTMLVDNPARLFTAK 315 (316)
T ss_pred HHcCCCHHHHHHHHhhCHHHHhccC
Confidence 5679996666667778999998753
No 219
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.56 E-value=1.8e+02 Score=27.22 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=42.6
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhcccCCcHHHHHHHH--------------------HHHHHHHhhcCCCCHHHHHHH
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALI--------------------ATQTLEFVRDGDKTVAELMDI 60 (742)
Q Consensus 1 m~~~~~~~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~--------------------~~~~~e~~r~g~~~~~~~~~~ 60 (742)
++|++.+++=+.+|.-..=--|..++-+.+.||.+-.-+ ..+||+.+.+|+-|++|-++.
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rGnlKe~e~~lgiSYPTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~GeIs~eeA~~~ 111 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRGNLKEMEKELGISYPTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKGEISVEEALEI 111 (113)
T ss_pred hcCCHHHHHHHHHHHHhcCCHHHHHHHHCCCcHHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcCCCCHHHHHHH
Confidence 478999998888887766555666777777777665432 346778888887788776653
No 220
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=20.28 E-value=89 Score=27.30 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=24.4
Q ss_pred eEEEEEEeCCCcceeec-cc-----cccc--ccCCccccccccccccccccCCCceeEeCCCCeeEEE
Q 004611 151 AVILKVVNTGDRPVQVG-SH-----YHFI--EVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 151 ~~~~~v~n~~dr~~qvg-sh-----~h~~--e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
.++|+|+|.+++||.+- += |... +=|.--+|-+.++|= -|=..+.++||++++.+
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~Ft-----Qal~~~~l~pGe~~~~~ 65 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFT-----QALQEETLEPGESLTYE 65 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT------------EEEEE-TT-EEEEE
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhh-----heeeEEEECCCCEEEEE
Confidence 47899999999999863 11 1111 111111223333331 22246778888887766
Done!