Query 004611
Match_columns 742
No_of_seqs 413 out of 2361
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 18:00:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004611.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1910-1914//hhsearch_pdb/004611hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gy7_A Urease; JACK bean, hydr 1.0 1 1 1627.9 58.3 742 1-742 1-745 (840)
2 4ac7_C Urease subunit alpha; h 1.0 1 1 808.2 30.6 474 269-742 1-475 (570)
3 4ubp_C Protein (urease (chain 1.0 1 1 808.2 30.3 474 269-742 1-475 (570)
4 1e9y_A Urease subunit alpha; h 1.0 1 1 747.4 25.2 229 1-254 1-229 (238)
5 3qga_A UREA2, fusion of urease 1.0 1 1 742.2 23.2 224 1-250 1-225 (225)
6 1e9y_B Urease subunit beta; hy 1.0 1 1 713.2 30.6 473 269-742 2-474 (569)
7 4ep8_C Urease subunit alpha; a 1.0 1 1 696.5 29.1 470 270-742 2-471 (566)
8 4ac7_B Urease subunit beta; hy 1.0 1 1 382.0 13.0 120 130-251 6-125 (126)
9 4ubp_B Protein (urease (chain 1.0 1 1 382.0 13.0 120 130-251 6-125 (126)
10 4ep8_B Urease subunit beta; al 1.0 1 1 360.5 11.0 101 131-231 1-101 (101)
No 1
>4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A*
Probab=1.00 E-value=1 Score=1627.87 Aligned_cols=742 Identities=78% Similarity=1.237 Sum_probs=715.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCC
Q ss_conf 98880001245699889999998652657757789999999999873619999999999701014578767891200232
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~l~~~e~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|||||||+|||+||+||+||||||+||+|||||||+|||++++||+||||++||||||++|+++|++|||||||++||++
T Consensus 1 m~l~~~e~~~l~~~~~~~~a~~r~~~g~~ln~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (840)
T 4gy7_A 1 MKLSPREVEKLGLHNAGYLAQKRLARGVRLNYTEAVALIASQIMEYARDGEKTVAQLMCLGQHLLGRRQVLPAVPHLLNA 80 (840)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHTCCCHHHHHHHGGGSCCGGGBCTTHHHHCSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCCCHHHHCCE
T ss_conf 98872478899999999999999864344461989999999999999738986999999766517864346784764370
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCCEEECCCCCEEEEEEEEC
Q ss_conf 02101258995239841686588881234202677777888989999899-99971570899432079995379999858
Q 004611 81 VQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPVPAMDKFPGIEDN-NVPGRIIPGGGSITLNHGRKAVILKVVNT 159 (742)
Q Consensus 81 ~~ve~~f~dg~~lv~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pg~~~~~~~~~~~~~~~~~~~~~v~n~ 159 (742)
||||+||||||||||||+||++++|+|++||||||||+|+.+.|+...+. .+||++++.+++|+||+||++++|+|+|+
T Consensus 81 ~~ve~~f~~g~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (840)
T 4gy7_A 81 VQVEATFPDGTKLVTVHDPISRENGELQEALFGSLLPVPSLDKFAETKEDNRIPGEILCEDECLTLNIGRKAVILKVTSK 160 (840)
T ss_dssp EEEEEEETTEEEEEEEESCCCSSSCCHHHHTTTSCCCCCCGGGSCC----CCCTTCEECCSCEEECSCSCEEEEEEEEEC
T ss_pred EEEEEECCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCEEEEEEEEC
T ss_conf 68998848998799847887789986445303665778862125666645579961781687267448984589997767
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 99653321445522338753344222234511467884357289991389999843832796568866898895008999
Q 004611 160 GDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAA 239 (742)
Q Consensus 160 ~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~~~g~~~~~g~~~~~~~~~~~~~~~~~ 239 (742)
|||||||||||||||+|++|+|||++|||||||||||||||||||++|+|+||+|||+|+|+|||||++|++|..+.+++
T Consensus 161 ~~r~~~v~sh~hf~e~n~~l~fdr~~~~g~rl~~~~g~~~rf~pg~~~~v~l~~~~g~~~~~g~~~~~~g~~~~~~~~~~ 240 (840)
T 4gy7_A 161 GDRPIQVGSHYHFIEVNPYLTFDRRKAYGMRLNIAAGTAVRFEPGDCKSVTLVSIEGNKVIRGGNAIADGPVNETNLEAA 240 (840)
T ss_dssp CSSCEEEETTSCGGGSCTTEEBCHHHHTTEEECSCTTCEEEECTTCEEEEEEEECCTTCEECSTTSSSCEESSHHHHHHH
T ss_pred CCCCEEECCCCCHHHCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCEEEEEEEEECCCEEEECCCCCCCCCCCHHHHHHH
T ss_conf 98764754665433228443335666255331566887164288980699999815840775576445686674678999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99999825898975555566457788--7542129888886419998884223696238997015644665322478731
Q 004611 240 MEAVKLRQFGNQEEANTSVGVAGEDR--YLTTVISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKV 317 (742)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~g~~~~~g~gk~ 317 (742)
+++++++||.|.++++..+.....+. +.+++|||++|++|||||+||+||||||+||+|||||+|+|||||+|||||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (840)
T 4gy7_A 241 MHAVRSKGFGHEEEKDASEGFTKEDPNCPFNTFIHRKEYANKYGPTTGDKIRLGDTNLLAEIEKDYALYGDECVFGGGKV 320 (840)
T ss_dssp HHHHHHHTCCBCCCTTCCEEECCSCSSCTTCCEEEHHHHHHHHCCCTTCEEECTTSSCEEECCCBCCCTTCCCCCSTTSS
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCCCEEECCCCEE
T ss_conf 99999717887778764445545677887770307999988619986764774077329999226887662454168604
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECEEECCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEE
Q ss_conf 00000135788877765589990099749995564999989999997358997865688876434888439935997895
Q 004611 318 IREGMGQACGHHYAKSLDTVITNAVIIDHTGIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVT 397 (742)
Q Consensus 318 ~r~~~~~~~~~~~~~~~dlVI~Na~Iid~~gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVt 397 (742)
+||||||+++..+++.+|+||+|++|+|++|++++||+|+||||++||+.+||++||+|++++.++++++|||++|++|+
T Consensus 321 ~r~gmgq~~~~~~~~~~DLVItNA~IVD~tGi~kADI~IkDGRIaAIGkagnpD~~dgV~pdl~ig~gtEVIDA~GkiVt 400 (840)
T 4gy7_A 321 IRDGMGQSCGHPPAISLDTVITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVT 400 (840)
T ss_dssp SSBTTTBCSSSCGGGSCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTSBCCTTCEEEECTTCEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEEECEEEECCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEC
T ss_conf 10467767899976668889969499899986982499989999998356785422355666556999989979999983
Q ss_pred ECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 14024114778916999999999999972898878898656469986899999874189990176328999999688999
Q 004611 398 AGAIDCHVHFICPQLAHDAIASGITTLVGGGTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHE 477 (742)
Q Consensus 398 PGfID~HvHl~~P~~~~~al~~GvTTl~~gGtgp~~~~~~t~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e 477 (742)
|||||+|+|+.+|++..+++.+|+||++.+|+++...+..+.++++.+....++......+++++++.++.....+.+.+
T Consensus 401 PGfID~HvHl~~P~~~~eALasGVTTvv~gGtgp~~~~~~~~~~~~~~~~~~~l~a~~~~~vn~g~~~~~~~~~~~~L~e 480 (840)
T 4gy7_A 401 AGAIDCHVHYICPQLVYEAISSGITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQSTDDLPLNFGFTGKGSSSKPDELHE 480 (840)
T ss_dssp ECEEEEEEECCCTHHHHHHHHHTEEEEEEECSSSCHHHHHSSCCCSHHHHHHHHHHTTTSSSEEEEEEECCCSSSHHHHH
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHH
T ss_conf 48315031777778339999756799985897501576544343248899998753203316899967877654899997
Q ss_pred HHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf 99914763685368999999999999999973997999728875225899999985398499981346899998789999
Q 004611 478 IIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKV 557 (742)
Q Consensus 478 ~i~aGa~glkih~d~g~t~~~l~~~l~~A~e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~ 557 (742)
+.+.|+.++|.+.+|..+++.++.++..+++++.++.+|.++.++.+++++.+.+..++..|.+|.++...++++++++.
T Consensus 481 l~~aGa~g~K~~~~~~~t~~~i~~aL~~A~e~g~~V~ih~e~~~~~~~vee~laA~~g~~~h~~~~e~~~~~~A~dii~~ 560 (840)
T 4gy7_A 481 IIKAGAMGLKLHEDWGSTPAAIDNCLTIAEHHDIQINIHTDTLNEAGFVEHSIAAFKGRTIHTYHSEGAGGGHAPDIIKV 560 (840)
T ss_dssp HHHHTCSEEEEETTTCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSCSTTTGGGG
T ss_pred HHHCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHH
T ss_conf 54203348874255578999999999999982988998326743668999999863587643212044110223489998
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 44159645878999877500043202608996036999167899863233342246999999789959991699745763
Q 004611 558 CGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRI 637 (742)
Q Consensus 558 a~~~~vlpsstnpt~p~t~~tl~e~ldmi~v~hhl~~~~~edia~a~~Rir~~tia~~~~L~d~Gv~~~lgSDs~amgr~ 637 (742)
+...+.++.++++..+++.+...+++++.+.+|+++...+++..++.++++.++.+.++.+++.|++++++||++++++.
T Consensus 561 ~~~a~~l~~~t~~~~~~~~~~~~e~l~~~~~~~~l~~~i~ed~~~~~s~~~~~~~a~~~ll~dlGvi~~isSD~~p~~~~ 640 (840)
T 4gy7_A 561 CGIKNVLPSSTNPTRPLTSNTIDEHLDMLMVCHHLDREIPEDLAFAHSRIRKKTIAAEDVLNDIGAISIISSDSQAMGRV 640 (840)
T ss_dssp GGCTTEEEEEESTTSSCBTTHHHHHHHHHHHHTTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCEEECCBTTTBCG
T ss_pred HHCCCCEEEEEECCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 51455321575314154555655000047764035754454565400867766141899997089838982365432332
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEE
Q ss_conf 20023345546664510135677766689974999999999999999099998630017993119998899888894189
Q 004611 638 GEVISRTWQTAHKMKSQRGSFGPSAADNDNLRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMV 717 (742)
Q Consensus 638 ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVI~Dp~~~~~~v~~V 717 (742)
++...+.|+....+...++.+..+...+++++++++|+++|+|||+++|+++++|||++||.||||||||++|+.+|++|
T Consensus 641 ~e~~~~~~~~a~~~~~~~g~~~~e~~~~~~Lsl~eAIr~aTiNPAraLGLddr~GSIEpGK~ADLVLfDPa~FGvKPe~V 720 (840)
T 4gy7_A 641 GEVISRTWQTADKMKAQTGPLKCDSSDNDNFRIRRYIAKYTINPAIANGFSQYVGSVEVGKLADLVMWKPSFFGTKPEMV 720 (840)
T ss_dssp GGHHHHHHHHHHHHHHHHCSCTTSCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSSCTTSBCCEEEECGGGTTTCCSEE
T ss_pred CCCCHHHHCCCCCCHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHCCCCCEEE
T ss_conf 22101122035431021353244443237989999999999999999599888011189983359998826739987599
Q ss_pred EECCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9797888616888777899999999
Q 004611 718 IKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 718 i~~G~iV~~~~gd~~~~~~~~~p~~ 742 (742)
+|+|++||++|||+|+|||||||++
T Consensus 721 ik~G~Iv~~~~gd~~~s~~~~~p~~ 745 (840)
T 4gy7_A 721 IKGGMVAWADIGDPNASIPTPEPVK 745 (840)
T ss_dssp EETTEEEEEEECCTTSSSSCSSCCE
T ss_pred EECCEEEECCCCCCCCCCCCCCCCC
T ss_conf 9899998847889776878987642
No 2
>4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C*
Probab=1.00 E-value=1 Score=808.18 Aligned_cols=474 Identities=63% Similarity=1.050 Sum_probs=455.0
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEECEEECCC
Q ss_conf 2129888886419998884223696238997015644665322478731000001357888-777655899900997499
Q 004611 269 TVISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHH-YAKSLDTVITNAVIIDHT 347 (742)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~g~~~~~g~gk~~r~~~~~~~~~~-~~~~~dlVI~Na~Iid~~ 347 (742)
++|+|++|++|||||+||||||+||+||+|||||||+|||||+|||||++||||||+++.+ +++.+|++|+|++|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dllI~n~~vvd~~ 80 (570)
T 4ac7_C 1 MKINRQQYAESYGPTVGDEVRLADTDLWIEVEKDYTTYGDEVNFGGGKVLREGMGENGTYTRTENVLDLLLTNALILDYT 80 (570)
T ss_dssp CEEEHHHHHHHHCCCTTCEEECTTSSCEEECCCBCCCTTCCCCCSTTCSCSBTTTBCSSCCTTTTBCSEEEEEEEEEETT
T ss_pred CCCCHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCEEEECEEEECCC
T ss_conf 94588999886099867645513773089995146566704650587363344576777776667788899795998999
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 95564999989999997358997865688876434888439935997895140241147789169999999999999728
Q 004611 348 GIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGG 427 (742)
Q Consensus 348 gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvHl~~P~~~~~al~~GvTTl~~g 427 (742)
++.++||+|+||||++|++.+++++|+++++++..+.++++||++|++|+|||||+|+|+.+|++...++..|+||++++
T Consensus 81 g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~Pg~~~aAl~gGvTTvv~g 160 (570)
T 4ac7_C 81 GIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINPDQVDVALANGITTLFGG 160 (570)
T ss_dssp EEEEEEEEEETTEEEEEECCBCTTTCSSCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCTTHHHHHHHTTEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECEEECCCCCCCCCHHHHHHHCCCEEEEEC
T ss_conf 82887999989999996167785423454433357888628968998895287863536678605799985597399855
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 98878898656469986899999874189990176328999999688999999147636853689999999999999999
Q 004611 428 GTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAE 507 (742)
Q Consensus 428 Gtgp~~~~~~t~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkih~d~g~t~~~l~~~l~~A~ 507 (742)
|++|.++++..+++++.+.++.++++.+..+++++++++++....+.+.++.++|+.++|+|++|+.+++.+++++++|+
T Consensus 161 g~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~~~~~g~~~~~~l~el~el~~aGa~gfK~~~~~~~~~~~L~~aL~~A~ 240 (570)
T 4ac7_C 161 GTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGLKIHEDWGATPASIDRSLTVAD 240 (570)
T ss_dssp CSSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCCSSHHHHHHHHHHTCCEEEEEGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 75764456776767759999999987541781489884567768999999997599757503678999999999999999
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCEEE
Q ss_conf 73997999728875225899999985398499981346899998789999441596458789998775000432026089
Q 004611 508 EYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLM 587 (742)
Q Consensus 508 e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnpt~p~t~~tl~e~ldmi~ 587 (742)
++++++.+|++++++.++++++++++.++.+|.+|.++++++|+||+++.++..|++|++|||+.||+.++++||++|+|
T Consensus 241 ~~g~~V~iHae~l~e~g~Vedalea~~Gr~ih~~HiEgag~~hapd~i~~~~~~~vlps~t~Pt~p~~~n~~~e~ld~l~ 320 (570)
T 4ac7_C 241 EADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLM 320 (570)
T ss_dssp HHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGGGSTTEEEBCCGGGSSCBTTHHHHHHHHHH
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHEE
T ss_conf 73998999748863313999999983899412576404455567689997414873046568887753011687640164
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 96036999167899863233342246999999789959991699745763200233455466645101356777666899
Q 004611 588 VCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDN 667 (742)
Q Consensus 588 v~hhl~~~~~edia~a~~Rir~~tia~~~~L~d~Gv~~~lgSDs~amgr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~g 667 (742)
+|||+++.+++|++++++|+|.+++++++.|++.|+.+++|||+++++++++.+.+.|+.+.+++..++.+..+...+++
T Consensus 321 v~hhl~~~i~~D~~~a~~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge~~~~~~~~a~~~~~~rg~l~~~~~~~~~ 400 (570)
T 4ac7_C 321 VCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDN 400 (570)
T ss_dssp HHTTCCTTCHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCHHHHHHHHHHHHHHHHCSCTTCCTTCCH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 31036745541267788654153016445545449889998760114776765472899999999854899975543347
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 749999999999999990999986300179931199988998888941899797888616888777899999999
Q 004611 668 LRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 668 l~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVI~Dp~~~~~~v~~Vi~~G~iV~~~~gd~~~~~~~~~p~~ 742 (742)
++++++|+++|+|||+++|+++++|||++||.||||+||+++|..++..||++|+++|+.+||+|+|||||||++
T Consensus 401 ~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~~~~v~~t~~~G~~v~~~~gd~~~s~~~~~~~~ 475 (570)
T 4ac7_C 401 FRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDPSASIPTPQPVM 475 (570)
T ss_dssp HHHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGTTTSCSEEEETTEEEEEEECCTTSSSSCSSCCE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCE
T ss_conf 899999999869999984887877665878816889989402059657999899997814689777889987525
No 3
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Probab=1.00 E-value=1 Score=808.18 Aligned_cols=474 Identities=63% Similarity=1.050 Sum_probs=455.0
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEECEEECCC
Q ss_conf 2129888886419998884223696238997015644665322478731000001357888-777655899900997499
Q 004611 269 TVISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHH-YAKSLDTVITNAVIIDHT 347 (742)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~g~~~~~g~gk~~r~~~~~~~~~~-~~~~~dlVI~Na~Iid~~ 347 (742)
++|+|++|++|||||+||||||+||+||+|||||||+|||||+|||||++||||||+++.+ +++.+|++|+|++|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dllI~n~~vvd~~ 80 (570)
T 4ubp_C 1 MKINRQQYAESYGPTVGDEVRLADTDLWIEVEKDYTTYGDEVNFGGGKVLREGMGENGTYTRTENVLDLLLTNALILDYT 80 (570)
T ss_dssp CEEEHHHHHHHHCCCTTCEEECTTSSCEEECCCBCCCTTCCCCCSTTCSCSBTTTBCSSCCTTTTBCSEEEEEEEEEETT
T ss_pred CCCCHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCEEEECEEEECCC
T ss_conf 94688999886199867645512773399996146555603450586364234576777776667788899795998999
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 95564999989999997358997865688876434888439935997895140241147789169999999999999728
Q 004611 348 GIFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGG 427 (742)
Q Consensus 348 gi~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvHl~~P~~~~~al~~GvTTl~~g 427 (742)
++.++||+|+||||++|++.+++++|+++++++..+.++++||++|++|+|||||+|+|+.+|++...++..|+||++++
T Consensus 81 g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~Pg~~~aAl~gGvTTvv~g 160 (570)
T 4ubp_C 81 GIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINPDQVDVALANGITTLFGG 160 (570)
T ss_dssp EEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCTTHHHHHHHTTEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECEEECCCCCCCCCHHHHHHHCCCEEEEEC
T ss_conf 82887999989999996167785423454433457888628968999896188971537788514799985597399855
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 98878898656469986899999874189990176328999999688999999147636853689999999999999999
Q 004611 428 GTGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAE 507 (742)
Q Consensus 428 Gtgp~~~~~~t~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkih~d~g~t~~~l~~~l~~A~ 507 (742)
|++|.++++..+++++.+.++.++++.+..+++++++++++....+.+.++.++|+.++|+|++|+.+++.+++++++|+
T Consensus 161 g~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~~~~~g~~~~~~l~el~el~~aGa~gfK~~~~~~~~~~~L~~aL~~A~ 240 (570)
T 4ubp_C 161 GTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGLKIHEDWGATPASIDRSLTVAD 240 (570)
T ss_dssp CCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCCSSHHHHHHHHHHTCCEEEEEGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 75665567776777759999999987641781489884567768999999997599757503678999999999999999
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCEEE
Q ss_conf 73997999728875225899999985398499981346899998789999441596458789998775000432026089
Q 004611 508 EYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLM 587 (742)
Q Consensus 508 e~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnpt~p~t~~tl~e~ldmi~ 587 (742)
++++++.+|++++++.++++++++++.++.+|.+|.++++++|+||+++.++..|++|++|||+.||+.++++||++|+|
T Consensus 241 ~~g~~V~iHae~l~e~g~Vedalea~~Gr~ih~~HiEgag~~hapd~i~~~~~~~vlps~t~Pt~p~~~n~~~e~ld~l~ 320 (570)
T 4ubp_C 241 EADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLM 320 (570)
T ss_dssp HHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGGGSTTEEEBCCSTTSSCBTTHHHHHHHHHH
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHEE
T ss_conf 73998999758863304999999983898214777505555567689997324873046568887753011687640164
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 96036999167899863233342246999999789959991699745763200233455466645101356777666899
Q 004611 588 VCHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDN 667 (742)
Q Consensus 588 v~hhl~~~~~edia~a~~Rir~~tia~~~~L~d~Gv~~~lgSDs~amgr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~g 667 (742)
+|||+++.+++|++++++|+|.+++++++.|++.|+.+++|||+++++++++.+.+.|+.+.+++..++.+..+...+++
T Consensus 321 v~hhl~~~i~~D~~~a~~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge~~~~~~~~a~~~~~~rg~l~~~~~~~~~ 400 (570)
T 4ubp_C 321 VCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDN 400 (570)
T ss_dssp HHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSCCH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 31036745430367888654153026445545449879997760124776765472899999999854899975543347
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 749999999999999990999986300179931199988998888941899797888616888777899999999
Q 004611 668 LRIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 668 l~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVI~Dp~~~~~~v~~Vi~~G~iV~~~~gd~~~~~~~~~p~~ 742 (742)
++++++|+++|+|||+++|+++++|||++||.||||+||+++|..++..||++|+++|+.+||+|+|||||||++
T Consensus 401 ~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~~~~v~~t~~~G~~v~~~~gd~~~s~~~~~~~~ 475 (570)
T 4ubp_C 401 FRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDPSASIPTPQPVM 475 (570)
T ss_dssp HHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGTTTSCSEEEETTEEEEEEECCTTSSSSCSSCCE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCCCCE
T ss_conf 899999999738999982987777544789744889989630049703999999998814789766889987514
No 4
>1e9y_A Urease subunit alpha; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A*
Probab=1.00 E-value=1 Score=747.40 Aligned_cols=229 Identities=51% Similarity=0.799 Sum_probs=224.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCC
Q ss_conf 98880001245699889999998652657757789999999999873619999999999701014578767891200232
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~l~~~e~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|||||||+|||+||+||+|||||++||+|||||||+|||++++||+||||++||||||++|+++|++||||||||+||++
T Consensus 1 M~LtPrE~dkLli~~aa~lA~rR~arGlkLN~pEAvAlI~~~ilE~aRdG~~sVaelM~~g~~~L~r~~Vm~GV~~mi~~ 80 (238)
T 1e9y_A 1 MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHE 80 (238)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHHHHTCSCHHHHHHHGGGSCCTTTBCTTHHHHCCE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCCCHHHHCCE
T ss_conf 98870268898999999999999971645574999999999999987638874999999753116886536675764010
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCEEEEEEEECC
Q ss_conf 02101258995239841686588881234202677777888989999899999715708994320799953799998589
Q 004611 81 VQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPVPAMDKFPGIEDNNVPGRIIPGGGSITLNHGRKAVILKVVNTG 160 (742)
Q Consensus 81 ~~ve~~f~dg~~lv~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~ 160 (742)
||||+||||||||||||+||++++| |+||||++++++|+||+||++++|+|+|||
T Consensus 81 vqVEatFpDGTkLVTVh~PI~~~~g-------------------------miPGei~~~~g~I~lN~gr~~~~l~V~NtG 135 (238)
T 1e9y_A 81 VGIEAMFPDGTKLVTVHTPIEANGK-------------------------LVPGELFLKNEDITINEGKKAVSVKVKNVG 135 (238)
T ss_dssp EEEEEEETTEEEEEEEECCSCCCSS-------------------------CCTTCEECCSCEEETTTTCCCCEEEEEECS
T ss_pred EEEEEECCCCCEEEEEECCCCCCCC-------------------------CCCCEEECCCCCEEECCCCCEEEEEEEECC
T ss_conf 1477774899878994057776668-------------------------879758749997464799976899988679
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 96533214455223387533442222345114678843572899913899998438327965688668988950089999
Q 004611 161 DRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAAM 240 (742)
Q Consensus 161 dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 240 (742)
||||||||||||||+|+||+|||++|||||||||||||||||||++|+|+||+|||+|+|||||++++|++|..++.+++
T Consensus 136 DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTAVRFEPG~~r~V~LV~~~G~r~v~Gf~glv~G~ld~~~~~~al 215 (238)
T 1e9y_A 136 DRPVQIGSHFHFFEVNRCLDFDREKTFGKRLDIAAGTAVRFEPGEEKSVELIDIGGNRRIFGFNALVDRQADNESKKIAL 215 (238)
T ss_dssp SSCEEEETTSCGGGSCTTEESCGGGGTTEEECSSTTCEEEECTTCEEEEEEEECCTTCEECSTTSSCCEECSHHHHHHHH
T ss_pred CCCEEECCCCCHHHCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCEEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 89657526554675083111468771786447678774744899836999997358669856787778867702588999
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99998258989755
Q 004611 241 EAVKLRQFGNQEEA 254 (742)
Q Consensus 241 ~~~~~~~~~~~~~~ 254 (742)
++++++||.|.+..
T Consensus 216 ~r~~~~Gf~~~~~~ 229 (238)
T 1e9y_A 216 HRAKERGFHGAKSD 229 (238)
T ss_dssp HHHHHHTCTTCCCC
T ss_pred HHHHHCCCCCCCCC
T ss_conf 99997587877674
No 5
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, hydrolase; HET: FME KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A*
Probab=1.00 E-value=1 Score=742.15 Aligned_cols=224 Identities=44% Similarity=0.685 Sum_probs=219.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCC
Q ss_conf 98880001245699889999998652657757789999999999873619999999999701014578767891200232
Q 004611 1 MKLTPREAEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQTLEFVRDGDKTVAELMDIGKQILGRRQVLPAVPHLLDT 80 (742)
Q Consensus 1 m~l~~~e~~~l~~~~~~~~a~~~~~~g~~l~~~e~~a~~~~~~~e~~r~g~~~~~~~~~~~~~~l~~~~v~~~v~~~~~~ 80 (742)
|||||||+|||+||+||+|||||++||+|||||||+||||+++||+||||++||||||++|+++|++||||||||+||++
T Consensus 1 M~LtPrE~dkL~i~~a~~lA~rR~arGlkLN~pEAvAlI~~~i~E~aRdG~~sVaelM~~g~~~L~r~~Vm~gV~~ml~~ 80 (225)
T 3qga_A 1 MKLTPKEQEKFLLYYAGEVARKRKEEGLKLNQPEAIAYISAHIMDEARRGKKTVAQLMEECVHFLKKDEVMPGVGNMVPD 80 (225)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHTCSCHHHHHHHTTTSBCGGGBCTTHHHHCSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHCCCCHHHHHCC
T ss_conf 98867889999999999999999973645453989999999999997659997999999853438888756776775022
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE-EECCCCEEECCCCCEEEEEEEEC
Q ss_conf 02101258995239841686588881234202677777888989999899999715-70899432079995379999858
Q 004611 81 VQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPVPAMDKFPGIEDNNVPGRI-IPGGGSITLNHGRKAVILKVVNT 159 (742)
Q Consensus 81 ~~ve~~f~dg~~lv~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~-~~~~~~~~~~~~~~~~~~~v~n~ 159 (742)
||||+||||||||||||+||++++ ++|||| ++++++|+||+||++++|+|+|+
T Consensus 81 vqVEatFpDGTkLVTVh~PI~~~~--------------------------~~PGei~~~~~g~I~lN~gr~~~~l~V~Nt 134 (225)
T 3qga_A 81 LGVEANFPDGTKLVTVNWPIEPDD--------------------------FKAGEIKFASDKDIELNAGKEITELKVTNK 134 (225)
T ss_dssp EEEEEEETTEEEEEEEESCBCCCS--------------------------CCTTCEECSCSCCEETTTTCCCEEEEEEEC
T ss_pred CEEEEECCCCCEEEEECCCCCCCC--------------------------CCCCEEECCCCCCEECCCCCCEEEEEEEEC
T ss_conf 126677289987899436766778--------------------------899867615998665079996689999988
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 99653321445522338753344222234511467884357289991389999843832796568866898895008999
Q 004611 160 GDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVKLISIGGRKVIRGGNGIVDGPTDDAGCSAA 239 (742)
Q Consensus 160 ~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~l~~~~g~~~~~g~~~~~~~~~~~~~~~~~ 239 (742)
|||||||||||||||+|++|+|||++|||||||||||||||||||++|+|+||+|||+|+|+|||++++|++|..+++++
T Consensus 135 GDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG~r~v~G~~gl~~G~ld~~~~~~a 214 (225)
T 3qga_A 135 GPKSLHVGSHFHFFEANRALEFDREKAYGKRLDIPSGNTLRIGAGETKTVHLIPIGGSKKIIGMNGLLNGIADDLHKQKA 214 (225)
T ss_dssp SSSCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEEECSTTCEECSTTSSCCEECSHHHHHHH
T ss_pred CCCCEEECCCCCHHHCCCHHHCCHHHHCCCCCCCCCCCEEEECCCCEEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHH
T ss_conf 99964652646656528011125877278644667887075488982699999756875875778667886886789999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999825898
Q 004611 240 MEAVKLRQFGN 250 (742)
Q Consensus 240 ~~~~~~~~~~~ 250 (742)
++|++++||..
T Consensus 215 l~r~~~~GF~k 225 (225)
T 3qga_A 215 LEKAKHHGFIK 225 (225)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHCCCCC
T ss_conf 99999736779
No 6
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C*
Probab=1.00 E-value=1 Score=713.15 Aligned_cols=473 Identities=63% Similarity=1.039 Sum_probs=430.4
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEECCCC
Q ss_conf 21298888864199988842236962389970156446653224787310000013578887776558999009974999
Q 004611 269 TVISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHTG 348 (742)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~g~~~~~g~gk~~r~~~~~~~~~~~~~~~dlVI~Na~Iid~~g 348 (742)
.+|+|++||+||||||||||||+||+||+|||||||+|||||+|||||++||||+|+. .++...+|++|+|++|+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dllI~n~~Vid~~g 80 (569)
T 1e9y_B 2 KKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NPSKEELDLIITNALIVDYTG 80 (569)
T ss_dssp CEEEHHHHHTTTCCCTTCEEECTTSSCEEECCEECSCTTCCCCCSTTSSCSBTTTBCS-SCCTTCCSEEEEEEEEEETTE
T ss_pred CCCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCEEEEEEEEECCCC
T ss_conf 8488899988659997874530477149999015666684565378735456777576-787665888999169989998
Q ss_pred CEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 55649999899999973589978656888764348884399359978951402411477891699999999999997289
Q 004611 349 IFKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGG 428 (742)
Q Consensus 349 i~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvHl~~P~~~~~al~~GvTTl~~gG 428 (742)
+.+++|+|+||||++||+..++++|+++.+++..++++++||++|++|+|||||+|+|+.+|++..+++.+|+||++++|
T Consensus 81 i~~~dI~I~dGrI~~IG~~~~~~~~~~~~~~~~~~~~~evIDa~G~iV~PGlID~HvHl~~p~~~~~al~~GvTTv~d~g 160 (569)
T 1e9y_B 81 IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGG 160 (569)
T ss_dssp EEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECEEEEEEETTCTTHHHHHHHTTEEEEEEEC
T ss_pred CEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCEEEEEECCCCCHHHHHHHHCCEEEEECCC
T ss_conf 17516999899999962677844234555445578987289799998831778875357880799999719823998477
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 88788986564699868999998741899901763289999996889999991476368536899999999999999997
Q 004611 429 TGPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEE 508 (742)
Q Consensus 429 tgp~~~~~~t~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkih~d~g~t~~~l~~~l~~A~e 508 (742)
++|..+++..+++++++.++.++++.+..++++++.+++....++.+.++++.|+.++|+|.+|+.+++.++.+++.|++
T Consensus 161 ~~p~~~t~~~~~~~g~~~l~~~~~a~~~~~~~~~~~g~g~~~~~~~l~e~~~~Ga~gik~~~~~~~t~e~l~~~l~~A~~ 240 (569)
T 1e9y_B 161 TGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240 (569)
T ss_dssp CSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCHHHHHHHHHTTCSEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 57777776753577589999999974305845999788876899999999971988897557789999999999999998
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCEEEE
Q ss_conf 39979997288752258999999853984999813468999987899994415964587899987750004320260899
Q 004611 509 YDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMV 588 (742)
Q Consensus 509 ~g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnpt~p~t~~tl~e~ldmi~v 588 (742)
+++++.+|+++.++.++++..++...++.+|++|.+...++|+++.++.+++.++++++++|+.+++.+++.++++++++
T Consensus 241 ~g~~V~iHa~~~~e~g~~~~~la~~~g~~~hi~H~~~~~~~~~~d~I~~~~~~gv~~~~~~ptl~~t~~~~~~~~d~~~v 320 (569)
T 1e9y_B 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMV 320 (569)
T ss_dssp TTCEEEECCCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSCSTTTGGGGGGSTTEEEEECGGGCSCBTTHHHHHHHHHHH
T ss_pred HCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHCHHHH
T ss_conf 39999997698630159999999876997899973367655639999999874984676478521020001323011221
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 60369991678998632333422469999997899599916997457632002334554666451013567776668997
Q 004611 589 CHHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNL 668 (742)
Q Consensus 589 ~hhl~~~~~edia~a~~Rir~~tia~~~~L~d~Gv~~~lgSDs~amgr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl 668 (742)
||++.+..++++.++.+|++.++.++++.|++.|+++++|||++++++.++...+.|+...+|+..++.+..+.....++
T Consensus 321 ~h~l~~~~~ed~~~~~~rlr~~~~a~~~~L~d~Gv~v~iGSD~~~~~~~g~~~~~~~~~~~~~~~~~G~l~~~~~~~~~l 400 (569)
T 1e9y_B 321 CHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNF 400 (569)
T ss_dssp TTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTSHHHHHHHHHHHHHHHHCSCSSCCSSSCHH
T ss_pred HHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCC
T ss_conf 02148441879987431000567789999986799799957998667655433410047888676336763000013699
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 49999999999999990999986300179931199988998888941899797888616888777899999999
Q 004611 669 RIRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 669 ~~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVI~Dp~~~~~~v~~Vi~~G~iV~~~~gd~~~~~~~~~p~~ 742 (742)
+++++++++|+|||+++|+++++|||++||.||||+||+++|..++..||++|+++|.++||+|+|+||+||++
T Consensus 401 s~~~al~~~T~npA~~lGl~~~~GsIe~Gk~ADlvv~d~~~~~~~v~~v~~~G~iv~~~~g~~~~~~~~~~p~~ 474 (569)
T 1e9y_B 401 RIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVY 474 (569)
T ss_dssp HHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEECTTTTTTCCSEEEETTEEEEEEECCTTSSSSCSSCCE
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCC
T ss_conf 99999999959999980998875473799989999978042279846899999999827788555789999862
No 7
>4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ...
Probab=1.00 E-value=1 Score=696.47 Aligned_cols=470 Identities=68% Similarity=1.094 Sum_probs=440.0
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEECCCCC
Q ss_conf 12988888641999888422369623899701564466532247873100000135788877765589990099749995
Q 004611 270 VISREAYANMYGPTTGDKIQLGDTELYAEIESDFSVYGDECVFGGGKVIREGMGQACGHHYAKSLDTVITNAVIIDHTGI 349 (742)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~g~~~~~g~gk~~r~~~~~~~~~~~~~~~dlVI~Na~Iid~~gi 349 (742)
+|+|++||+|||||||||||||||+||+|||||+|+|||||+|||||++||||||++.. ..+.+|+||+|++|+|++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlvI~Na~Ivd~~Gi 80 (566)
T 4ep8_C 2 NISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQML-AADCVDLVLTNALIVDHWGI 80 (566)
T ss_dssp EEEHHHHHHHHCCCTTCEEECTTSSCEEECCEECSCTTCCCCCSTTCSSSBTTTBCCCC-GGGSCSEEEEEEEEEETTEE
T ss_pred CCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCCCEEEECCCEECCCCCCCCCCC-CCCCCCEEEECCEEECCCCE
T ss_conf 88879988863998677566307725999913676667423305870534456878777-77878889979399899984
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 56499998999999735899786568887643488843993599789514024114778916999999999999972898
Q 004611 350 FKADIGIKNGLIVALGKAGNPDIMNDVHPNMIIGANTEVIAGERFIVTAGAIDCHVHFICPQLAHDAIASGITTLVGGGT 429 (742)
Q Consensus 350 ~~adI~IkdGrIv~IG~~~~~~~~~~~~~~~~~~~~teVIDa~G~iVtPGfID~HvHl~~P~~~~~al~~GvTTl~~gGt 429 (742)
+++||+|+||||++||+.++|+.+++++ +.+++++++||++|++|+|||||+|+|+..|.+.......+.+++..+++
T Consensus 81 ~kaDIlIkDGrIaaIG~ag~pd~~d~vd--l~~~~g~eVIDA~GkiV~PG~ID~HvH~~~~~~~~~a~~~~~~~~~~~~~ 158 (566)
T 4ep8_C 81 VKADIGVKDGRIFAIGKAGNPDIQPNVT--IPIGAATEVIAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGT 158 (566)
T ss_dssp EEEEEEEETTEEEEEECEECTTTCSSCC--EECCTTCEEEECTTCEEEECEEEEEEECSCTTHHHHHHHHTEEEEEEECS
T ss_pred EEEEEEEECCEEEEEECCCCCCCCCCCC--CCCCCCCEEEECCCCEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCE
T ss_conf 9868999899999962677865455543--24689887997999989758787341565777632124566988862866
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 87889865646998689999987418999017632899999968899999914763685368999999999999999973
Q 004611 430 GPADGTRATTCTPAPSQMKLMLQSTDDLPLNFGFTGKGNSAKPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLTVAEEY 509 (742)
Q Consensus 430 gp~~~~~~t~~t~~~~~i~~~l~a~~~~~vn~g~~~~g~~~~~~~l~e~i~aGa~glkih~d~g~t~~~l~~~l~~A~e~ 509 (742)
.+.......++++..+....+..+....++++++.+.+..........+..+++.+++.+.+|......+..++..+..+
T Consensus 159 ~~~~~~~~~~~t~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 238 (566)
T 4ep8_C 159 GPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADEM 238 (566)
T ss_dssp SSSHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCHHHHHHHHHHTCSEEEEEGGGCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 87772378998618889999997421651655344264556503457776410122101233455302356676799875
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCEEEEE
Q ss_conf 99799972887522589999998539849998134689999878999944159645878999877500043202608996
Q 004611 510 DIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVC 589 (742)
Q Consensus 510 g~~v~iH~dtlne~g~ve~~l~a~~g~~ih~~H~~gaggghapdiI~~a~~~~vlpsstnpt~p~t~~tl~e~ldmi~v~ 589 (742)
+.+..+|.+..++.++++.......++..+.+|.......+.+++.+.....+.+++++++..+.+.+...+++++.+.|
T Consensus 239 ~~~~~i~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 318 (566)
T 4ep8_C 239 DIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPTLPYTLNTIDEHLDMLMVC 318 (566)
T ss_dssp TCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGGGCTTEEEEECSTTSSCBTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCEEEEE
T ss_conf 02012233247788998866764168553222233414677899999999876418730004177888764001148986
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 03699916789986323334224699999978995999169974576320023345546664510135677766689974
Q 004611 590 HHLHKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGSFGPSAADNDNLR 669 (742)
Q Consensus 590 hhl~~~~~edia~a~~Rir~~tia~~~~L~d~Gv~~~lgSDs~amgr~ge~i~~~~~~~~~m~~~~~~L~~~~~~~~gl~ 669 (742)
||+.....+...+++.+++..+++....+++.|.+..+++|++++.+.++...+.|+....+...+..+........+++
T Consensus 319 h~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~i~sD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gls 398 (566)
T 4ep8_C 319 HHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFR 398 (566)
T ss_dssp HTCCTTCHHHHHHHHHHCCHHHHHHHHHHHHHTSSCEECCCTTSSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSSCHHH
T ss_pred ECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 12458746677522588754666789999748983467403345330013455567777207999999998641159989
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999990999986300179931199988998888941899797888616888777899999999
Q 004611 670 IRRYIAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVT 742 (742)
Q Consensus 670 ~~~aL~~aTiNpA~~lGl~d~vGSIe~GK~ADLVI~Dp~~~~~~v~~Vi~~G~iV~~~~gd~~~~~~~~~p~~ 742 (742)
++++|+++|+|||+++|+++++|||++||.|||||||+++|+.+|++|+++|++||++|||+|+|||||||++
T Consensus 399 ~~eal~~aTiNPAralGL~d~iGSIevGK~ADLVL~Dp~~f~vkP~~v~~~G~iv~a~~gd~n~~~~~~~~~~ 471 (566)
T 4ep8_C 399 VKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVH 471 (566)
T ss_dssp HHHHHGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEECGGGTTTSCSEEEETTEEEEEEECCTTSSSSCSSCCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCC
T ss_conf 9999999978899981988777677888887899987623589716886489897824699644777898752
No 8
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=1.00 E-value=1 Score=381.98 Aligned_cols=120 Identities=43% Similarity=0.716 Sum_probs=116.8
Q ss_pred CCCCCEEEECCCCEEECCCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 99997157089943207999537999985899653321445522338753344222234511467884357289991389
Q 004611 130 NNVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIV 209 (742)
Q Consensus 130 ~~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v 209 (742)
.|+||||++++++|+||+||++++|+|+|||||||||||||||||+|++|+|||++|||||||||||||||||||++|+|
T Consensus 6 ~miPGei~~~~g~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V 85 (126)
T 4ac7_B 6 YIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEV 85 (126)
T ss_dssp CCCTTCEECCSSEEETTTTSCEEEEEEEECSSSCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEE
T ss_pred CCCCCEEEECCCCEEECCCCCEEEEEEEECCCCCEEECCCCCHHHCCCHHHCCHHHHCCCCCCCCCCCEEEECCCCEEEE
T ss_conf 88898688389878857999478999876898777873655646538001034866167423656877186489984799
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 999843832796568866898895008999999998258989
Q 004611 210 KLISIGGRKVIRGGNGIVDGPTDDAGCSAAMEAVKLRQFGNQ 251 (742)
Q Consensus 210 ~l~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (742)
+||+|||+|+|+|||++++|++|..+ ++++|++++||...
T Consensus 86 ~LV~~~G~r~v~G~~gl~~G~ld~~~--~~l~r~~~~GF~~~ 125 (126)
T 4ac7_B 86 ELTELGGNREVFGISDLTNGSVDNKE--LILQRAKELGYKGV 125 (126)
T ss_dssp EEEECCTTCEECSTTTSCSEETTCHH--HHHHHHHHHTCTTC
T ss_pred EEEECCCCEEEECCCCCCCCCCCCHH--HHHHHHHHCCCCCC
T ss_conf 99973687688676755677568689--99999998487668
No 9
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=1.00 E-value=1 Score=381.98 Aligned_cols=120 Identities=43% Similarity=0.716 Sum_probs=116.8
Q ss_pred CCCCCEEEECCCCEEECCCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 99997157089943207999537999985899653321445522338753344222234511467884357289991389
Q 004611 130 NNVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIV 209 (742)
Q Consensus 130 ~~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v 209 (742)
.|+||||++++++|+||+||++++|+|+|||||||||||||||||+|++|+|||++|||||||||||||||||||++|+|
T Consensus 6 ~miPGei~~~~g~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V 85 (126)
T 4ubp_B 6 YIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEV 85 (126)
T ss_dssp CCCTTCEECCSSEEETTTTSCEEEEEEEECSSSCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEE
T ss_pred CCCCCEEEECCCCEEECCCCCEEEEEEEECCCCCEEECCCCCHHHCCCHHHCCHHHHCCCCCCCCCCCEEEECCCCEEEE
T ss_conf 88898688389878857999478999876898777873655646538001034866167423656877186489984799
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 999843832796568866898895008999999998258989
Q 004611 210 KLISIGGRKVIRGGNGIVDGPTDDAGCSAAMEAVKLRQFGNQ 251 (742)
Q Consensus 210 ~l~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (742)
+||+|||+|+|+|||++++|++|..+ ++++|++++||...
T Consensus 86 ~LV~~~G~r~v~G~~gl~~G~ld~~~--~~l~r~~~~GF~~~ 125 (126)
T 4ubp_B 86 ELTELGGNREVFGISDLTNGSVDNKE--LILQRAKELGYKGV 125 (126)
T ss_dssp EEEECCTTCEECSTTTSCSEETTCHH--HHHHHHHHHTCTTC
T ss_pred EEEECCCCEEEECCCCCCCCCCCCHH--HHHHHHHHCCCCCC
T ss_conf 99973687688676755677568689--99999998487668
No 10
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=1.00 E-value=1 Score=360.53 Aligned_cols=101 Identities=52% Similarity=0.852 Sum_probs=99.8
Q ss_pred CCCCEEEECCCCEEECCCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEE
Q ss_conf 99971570899432079995379999858996533214455223387533442222345114678843572899913899
Q 004611 131 NVPGRIIPGGGSITLNHGRKAVILKVVNTGDRPVQVGSHYHFIEVNPYLVFDRRKAFGMRLNIAAGTATRFEPGESKIVK 210 (742)
Q Consensus 131 ~~pg~~~~~~~~~~~~~~~~~~~~~v~n~~dr~~qvgsh~h~~e~n~~l~f~r~~~~g~~l~i~~g~~~rfepg~~~~v~ 210 (742)
|+||||++++++|+||+||++++|+|+|||||||||||||||||+|+||+|||++|||||||||||||||||||++|+|+
T Consensus 1 MiPGei~~~~g~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~r~V~ 80 (101)
T 4ep8_B 1 MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVE 80 (101)
T ss_dssp CCTTCEECCCSEEECSTTCCEEEEEEEECSSSCEEEETTSCGGGSCTTEESCTTTTTTEEECSSTTCEEEECTTCEEEEE
T ss_pred CCCCEEECCCCCEEECCCCCEEEEEEEECCCCCEEECCCCCHHHCCCCEEECHHHCCCCEECCCCCCEEEECCCCEEEEE
T ss_conf 94866862897588769997789997757986468716458567286620228555583026568773866899917999
Q ss_pred EEEECCCEEEECCCCCCCCCC
Q ss_conf 998438327965688668988
Q 004611 211 LISIGGRKVIRGGNGIVDGPT 231 (742)
Q Consensus 211 l~~~~g~~~~~g~~~~~~~~~ 231 (742)
||+|+|+|+|+|||++++|++
T Consensus 81 LV~~~G~r~v~Gf~g~v~G~L 101 (101)
T 4ep8_B 81 LVAFAGHRAVFGFRGEVMGPL 101 (101)
T ss_dssp EEECCTTCEECSTTSSCCEEC
T ss_pred EEECCCCEEEECCCCCCCCCC
T ss_conf 998168649975873435779
Done!