Query 004612
Match_columns 742
No_of_seqs 310 out of 1596
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 02:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 2.4E-59 5.2E-64 535.2 14.4 446 75-549 74-555 (775)
2 KOG1845 MORC family ATPases [C 99.8 1.6E-22 3.5E-27 233.3 1.8 269 189-512 1-278 (775)
3 COG0326 HtpG Molecular chapero 99.7 1.1E-17 2.4E-22 189.9 14.8 116 124-250 7-146 (623)
4 PRK05218 heat shock protein 90 99.7 8.7E-18 1.9E-22 193.3 12.8 114 124-248 6-144 (613)
5 PF13589 HATPase_c_3: Histidin 99.7 8.1E-18 1.8E-22 158.7 3.8 93 153-249 3-97 (137)
6 PRK14083 HSP90 family protein; 99.6 1.7E-15 3.7E-20 173.9 12.9 113 124-248 3-129 (601)
7 PTZ00130 heat shock protein 90 99.5 2.6E-15 5.7E-20 175.5 4.7 115 124-249 68-206 (814)
8 PTZ00272 heat shock protein 83 99.5 1.2E-14 2.6E-19 169.1 5.9 113 125-248 6-141 (701)
9 COG0323 MutL DNA mismatch repa 99.3 9.5E-12 2.1E-16 144.3 14.6 151 150-311 21-181 (638)
10 PRK00095 mutL DNA mismatch rep 99.3 1.5E-11 3.3E-16 142.2 13.2 91 150-248 20-116 (617)
11 TIGR00585 mutl DNA mismatch re 99.3 3.8E-11 8.3E-16 127.8 13.8 89 150-246 20-114 (312)
12 KOG0019 Molecular chaperone (H 99.2 4.5E-12 9.7E-17 143.1 4.6 117 123-250 36-174 (656)
13 KOG0020 Endoplasmic reticulum 99.2 5.8E-12 1.3E-16 139.1 2.2 114 125-249 76-217 (785)
14 COG1389 DNA topoisomerase VI, 98.9 4.4E-09 9.6E-14 116.5 11.9 97 151-248 35-139 (538)
15 KOG1979 DNA mismatch repair pr 98.9 3.4E-09 7.5E-14 119.6 7.9 156 150-314 25-188 (694)
16 PRK05559 DNA topoisomerase IV 98.4 2.8E-07 6.1E-12 107.5 6.1 122 115-248 5-140 (631)
17 PRK04184 DNA topoisomerase VI 98.3 1.1E-06 2.3E-11 100.8 8.1 97 152-248 36-141 (535)
18 TIGR01052 top6b DNA topoisomer 98.3 1.6E-06 3.5E-11 98.4 8.5 98 150-248 26-131 (488)
19 PF02518 HATPase_c: Histidine 98.3 1.8E-06 4E-11 77.0 7.2 91 153-247 6-99 (111)
20 PRK14868 DNA topoisomerase VI 98.3 1.3E-06 2.8E-11 102.8 7.8 96 151-248 45-148 (795)
21 TIGR01055 parE_Gneg DNA topois 98.3 8.8E-07 1.9E-11 103.4 5.6 108 131-249 13-134 (625)
22 PRK05644 gyrB DNA gyrase subun 98.2 1.9E-06 4.1E-11 100.8 5.5 122 115-248 5-140 (638)
23 TIGR01059 gyrB DNA gyrase, B s 98.0 5.5E-06 1.2E-10 97.3 5.8 110 131-248 10-133 (654)
24 KOG1978 DNA mismatch repair pr 98.0 5.3E-06 1.2E-10 96.0 5.1 97 143-248 9-114 (672)
25 PRK14867 DNA topoisomerase VI 98.0 1.5E-05 3.2E-10 93.5 8.5 94 153-247 37-138 (659)
26 PRK14939 gyrB DNA gyrase subun 98.0 8.8E-06 1.9E-10 96.7 6.3 111 131-249 16-141 (756)
27 smart00433 TOP2c Topoisomerase 97.9 8.6E-06 1.9E-10 94.7 3.9 88 156-249 5-105 (594)
28 KOG1977 DNA mismatch repair pr 97.7 2.3E-05 4.9E-10 90.9 4.0 91 151-249 20-115 (1142)
29 COG3290 CitA Signal transducti 97.6 0.00014 3.1E-09 83.1 7.7 94 149-247 424-520 (537)
30 cd00075 HATPase_c Histidine ki 97.5 0.00031 6.8E-09 58.5 7.1 89 154-246 2-93 (103)
31 PLN03237 DNA topoisomerase 2; 97.4 0.00029 6.3E-09 88.3 8.4 87 154-245 79-179 (1465)
32 smart00387 HATPase_c Histidine 97.4 0.00044 9.6E-09 58.6 6.5 89 153-245 6-97 (111)
33 PRK10604 sensor protein RstB; 97.3 0.00077 1.7E-08 74.4 8.3 91 152-247 319-412 (433)
34 TIGR01058 parE_Gpos DNA topois 97.2 0.00026 5.7E-09 83.3 4.7 110 131-248 14-137 (637)
35 PRK09470 cpxA two-component se 97.2 0.00088 1.9E-08 72.8 7.8 91 152-247 353-446 (461)
36 PRK11006 phoR phosphate regulo 97.2 0.00099 2.1E-08 73.1 7.8 94 151-247 316-412 (430)
37 TIGR01386 cztS_silS_copS heavy 97.1 0.0011 2.4E-08 71.6 7.9 91 151-244 352-445 (457)
38 TIGR02966 phoR_proteo phosphat 97.1 0.0017 3.6E-08 66.4 8.5 93 151-246 228-323 (333)
39 PRK10364 sensor protein ZraS; 97.1 0.0012 2.7E-08 72.8 7.7 87 151-246 347-436 (457)
40 PRK09303 adaptive-response sen 97.0 0.0023 4.9E-08 69.9 9.2 92 152-247 272-366 (380)
41 PRK10549 signal transduction h 97.0 0.0016 3.5E-08 71.2 7.8 93 152-247 352-447 (466)
42 COG0642 BaeS Signal transducti 97.0 0.00099 2.1E-08 66.5 5.7 88 151-246 227-317 (336)
43 COG0187 GyrB Type IIA topoisom 97.0 0.0006 1.3E-08 79.2 4.0 112 131-249 15-140 (635)
44 PRK10755 sensor protein BasS/P 96.9 0.0015 3.2E-08 69.5 6.5 91 150-247 245-338 (356)
45 PRK11100 sensory histidine kin 96.9 0.0022 4.7E-08 69.6 7.5 92 151-246 367-461 (475)
46 PRK09467 envZ osmolarity senso 96.8 0.0028 6E-08 68.8 7.8 88 152-246 331-421 (435)
47 PRK15053 dpiB sensor histidine 96.7 0.0041 8.8E-08 69.9 8.1 91 151-246 431-527 (545)
48 TIGR02938 nifL_nitrog nitrogen 96.7 0.0044 9.5E-08 67.0 8.0 91 153-246 388-482 (494)
49 TIGR02916 PEP_his_kin putative 96.6 0.0037 7.9E-08 73.4 6.9 85 153-246 580-668 (679)
50 TIGR03785 marine_sort_HK prote 96.5 0.0057 1.2E-07 72.7 7.7 93 152-247 597-692 (703)
51 PTZ00108 DNA topoisomerase 2-l 96.5 0.0036 7.8E-08 78.9 6.0 89 154-247 59-164 (1388)
52 PRK13837 two-component VirA-li 96.4 0.0076 1.6E-07 72.5 8.2 89 151-246 559-663 (828)
53 PRK10815 sensor protein PhoQ; 96.4 0.0089 1.9E-07 67.8 8.0 86 153-247 379-467 (485)
54 PRK11086 sensory histidine kin 96.4 0.0084 1.8E-07 66.6 7.6 87 152-246 433-523 (542)
55 PTZ00109 DNA gyrase subunit b; 96.3 0.0025 5.4E-08 77.1 3.4 121 117-249 99-273 (903)
56 PRK09835 sensor kinase CusS; P 96.3 0.01 2.2E-07 65.1 7.6 91 152-245 375-468 (482)
57 PRK11360 sensory histidine kin 96.2 0.0089 1.9E-07 66.1 6.9 86 153-246 501-589 (607)
58 PRK11073 glnL nitrogen regulat 96.2 0.012 2.7E-07 61.9 7.5 89 152-246 237-336 (348)
59 PRK10337 sensor protein QseC; 96.1 0.014 2.9E-07 63.9 7.5 85 152-246 352-439 (449)
60 PRK15347 two component system 96.0 0.015 3.2E-07 69.6 7.6 88 151-246 512-602 (921)
61 PHA02569 39 DNA topoisomerase 96.0 0.0059 1.3E-07 71.7 4.0 84 157-247 50-151 (602)
62 PRK11107 hybrid sensory histid 95.9 0.02 4.4E-07 68.3 8.5 94 152-247 408-507 (919)
63 PRK11091 aerobic respiration c 95.9 0.021 4.5E-07 67.7 8.1 93 152-247 398-494 (779)
64 PRK11466 hybrid sensory histid 95.8 0.021 4.5E-07 68.6 7.9 89 151-247 560-651 (914)
65 COG4191 Signal transduction hi 95.8 0.014 3.1E-07 67.8 6.0 85 152-244 497-587 (603)
66 PRK10841 hybrid sensory kinase 95.6 0.036 7.8E-07 68.0 9.1 92 151-246 561-655 (924)
67 TIGR02956 TMAO_torS TMAO reduc 95.6 0.025 5.5E-07 68.1 7.7 90 151-246 578-671 (968)
68 PRK10618 phosphotransfer inter 95.6 0.042 9.2E-07 67.4 9.5 94 151-247 564-661 (894)
69 PLN03128 DNA topoisomerase 2; 95.5 0.016 3.5E-07 72.4 5.6 86 155-245 55-154 (1135)
70 PRK10490 sensor protein KdpD; 95.5 0.028 6.1E-07 68.8 7.6 92 151-247 777-871 (895)
71 PRK10547 chemotaxis protein Ch 95.2 0.043 9.3E-07 65.4 7.5 90 154-246 387-511 (670)
72 TIGR01924 rsbW_low_gc serine-p 95.1 0.044 9.5E-07 53.6 6.0 87 153-244 43-131 (159)
73 PRK04069 serine-protein kinase 95.1 0.034 7.3E-07 54.3 5.2 87 153-244 43-131 (161)
74 TIGR01925 spIIAB anti-sigma F 95.0 0.074 1.6E-06 49.5 7.1 85 153-246 40-126 (137)
75 PRK09959 hybrid sensory histid 95.0 0.072 1.6E-06 66.2 9.1 92 151-246 827-924 (1197)
76 COG4585 Signal transduction hi 94.8 0.042 9.1E-07 59.7 5.5 75 151-246 278-353 (365)
77 PRK13557 histidine kinase; Pro 94.7 0.09 2E-06 58.2 7.9 90 152-246 277-382 (540)
78 PRK11644 sensory histidine kin 94.2 0.074 1.6E-06 60.8 6.0 70 152-244 410-482 (495)
79 PF13581 HATPase_c_2: Histidin 93.9 0.14 2.9E-06 46.9 6.0 81 152-242 31-113 (125)
80 PRK03660 anti-sigma F factor; 93.7 0.25 5.4E-06 46.4 7.6 84 153-245 40-125 (146)
81 PRK10600 nitrate/nitrite senso 93.6 0.1 2.2E-06 59.9 5.8 75 151-247 468-545 (569)
82 COG3850 NarQ Signal transducti 92.8 0.2 4.3E-06 58.2 6.4 74 155-248 484-558 (574)
83 COG2205 KdpD Osmosensitive K+ 91.5 0.33 7.2E-06 58.8 6.4 88 153-246 776-867 (890)
84 COG2972 Predicted signal trans 91.3 0.2 4.3E-06 56.7 4.2 54 155-208 353-407 (456)
85 KOG0787 Dehydrogenase kinase [ 90.9 0.54 1.2E-05 52.7 6.9 89 155-245 263-367 (414)
86 PRK13560 hypothetical protein; 90.0 0.5 1.1E-05 55.2 6.1 75 154-245 713-792 (807)
87 COG4192 Signal transduction hi 89.8 0.66 1.4E-05 53.4 6.4 64 152-216 564-627 (673)
88 COG0643 CheA Chemotaxis protei 89.6 0.81 1.8E-05 55.3 7.4 94 153-247 433-562 (716)
89 COG5000 NtrY Signal transducti 88.9 0.6 1.3E-05 55.2 5.4 57 153-209 601-661 (712)
90 COG2172 RsbW Anti-sigma regula 87.5 1.6 3.4E-05 42.8 6.7 87 151-246 39-128 (146)
91 COG3920 Signal transduction hi 86.6 1.1 2.5E-05 46.5 5.4 48 155-202 125-174 (221)
92 PRK10935 nitrate/nitrite senso 84.7 1.2 2.6E-05 50.4 4.9 74 153-247 472-548 (565)
93 PRK13559 hypothetical protein; 81.7 2.1 4.5E-05 45.7 5.0 74 153-245 268-347 (361)
94 COG5002 VicK Signal transducti 80.0 2 4.3E-05 48.3 4.2 75 153-231 343-418 (459)
95 COG3851 UhpB Signal transducti 77.8 3 6.6E-05 47.0 4.8 63 135-201 393-455 (497)
96 COG4251 Bacteriophytochrome (l 75.4 4.5 9.8E-05 48.4 5.5 87 153-246 637-729 (750)
97 COG3852 NtrB Signal transducti 65.5 10 0.00023 42.1 5.3 74 153-232 242-326 (363)
98 COG3275 LytS Putative regulato 46.2 27 0.00058 41.0 4.7 44 157-202 461-507 (557)
99 COG4564 Signal transduction hi 45.5 32 0.0007 38.8 5.0 78 153-248 356-438 (459)
100 KOG0355 DNA topoisomerase type 41.5 45 0.00097 41.3 5.8 48 154-204 55-102 (842)
101 PF14501 HATPase_c_5: GHKL dom 33.1 64 0.0014 28.8 4.2 42 153-196 6-49 (100)
102 KOG2183 Prolylcarboxypeptidase 20.2 32 0.0007 39.8 -0.2 14 78-91 288-301 (492)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.4e-59 Score=535.24 Aligned_cols=446 Identities=51% Similarity=0.781 Sum_probs=393.2
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhcccCCCCCCCCCccccCCCcceeeecchhhhcccccccCHH
Q 004612 75 EVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWAL 154 (742)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fwkag~y~~~~~~~~~~~~~~l~~~~vhp~fLhSnsTsh~w~f 154 (742)
+|++|---+.|-++++.++ .. ++++..-.||||||||+|..++........++.+|+++||+|||+|+|+|+|.+
T Consensus 74 ~vvvP~~t~~~~~~~~~~~----k~-~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~ 148 (775)
T KOG1845|consen 74 AVVVPCPTFNPRTREIVTE----KF-AFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAK 148 (775)
T ss_pred cceeccccccccccccccc----cc-ccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCccccccc
Confidence 3456655555544444331 22 446677899999999999999999888889999999999999999999999999
Q ss_pred HHHHHhhccchhhhhcCCceeEEEEEEccCCC-ceeEEEE-----EcCCCCCHHHHHhhhhccccccccCCcccCccccc
Q 004612 155 GAFAELLDNSLDEVCNGATYSNIDMLINRKDG-SRMLLIE-----DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (742)
Q Consensus 155 ~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g-~~~L~I~-----DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvG 228 (742)
+|++||||||+|.+.++|+.+.|+.+..+.+. ...++|+ |||+||.++-+..||.+|++.|......+|+||+|
T Consensus 149 ~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~g 228 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNG 228 (775)
T ss_pred ChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccc
Confidence 99999999999999999999998887655443 5667766 77999999999999999999987667899999999
Q ss_pred ccccccccCCeEEEEeeecCCCCCCCceeeeeechhhhccCCCCceEEec----cccccchhHHHHHhhccchhhhhhhH
Q 004612 229 FKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPM----LDYEGSQQEWKKIIRSSLDDWNRNVE 304 (742)
Q Consensus 229 fKsAsmrLG~~V~V~SK~~g~~g~~~t~SiglLS~tfl~~~g~ddIvVPm----~dye~~~~~w~~~i~~~~~dw~~nL~ 304 (742)
||++.|++|.+++|++|..+..|.+.++++|+|||+||+.++.++++||| .+|+...+.|..+++.+..+|..++.
T Consensus 229 fktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~ 308 (775)
T KOG1845|consen 229 FKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLE 308 (775)
T ss_pred cccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeee
Confidence 99999999999999999877678889999999999999999999999999 99999889999988888999999998
Q ss_pred h-----hhhcCCCCChHHHHHH---------------hhccCCCeeEEEEecc--ccccCCceeecCCCCcccccccCCc
Q 004612 305 T-----IVQWSPFSSEADLLHQ---------------FNLMKDHGTRIIIYNL--WEDDQGLLELDFDSDKHDIQLRGVN 362 (742)
Q Consensus 305 ~-----IlkySPf~sE~eLl~q---------------f~~Ig~~GT~III~NL--we~~dG~~ELDFdtD~~DI~i~g~~ 362 (742)
+ +++|+||.++.+++.| ++.+..+||.||+||+ |+++.|.+|+||+.+.++|..
T Consensus 309 i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~---- 384 (775)
T KOG1845|consen 309 IEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW---- 384 (775)
T ss_pred eHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc----
Confidence 8 9999999999999988 8888999999999999 999999999999999888841
Q ss_pred chhhhhhhhccCCCcchhhhhHHHHHHHHHHHhhcCCCceEEEEcCeeeccccccccccccccccccCCCCCCCCCCCcc
Q 004612 363 RDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLH 442 (742)
Q Consensus 363 ~d~k~~q~ak~~p~~~~~~~~~~SLRaYLSILYLRfpprfkIiLnGqkVep~~i~~Dl~~~e~~~YrPq~~~~~LP~~~~ 442 (742)
.+.++++.|.++||.++..+|++++.|+++.|+.+..+.+..+...|+|+......+ ...
T Consensus 385 -------------------~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~-~~~ 444 (775)
T KOG1845|consen 385 -------------------TYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGK-QRL 444 (775)
T ss_pred -------------------cchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCcc-chh
Confidence 345788999999999999999999999999999999998888888899985432211 112
Q ss_pred ceeeEEeecccCcccccccCceEEEecCcccc----hhhcccccCCCCCcceeeeecccccCCCCcccchhhHHHHHHHH
Q 004612 443 MAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIK----PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLE 518 (742)
Q Consensus 443 ~~~~itiGfl~~~~~~~~~qGfyVYhnnRLI~----~f~~Vw~~~~s~GrGVIGVleanflePthnKQdFe~t~~l~rL~ 518 (742)
+......||.+..++++++++|+|||++|||. +||+.|+..++.++++++++.+||.+|+|++|+|+.+...++.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~e 524 (775)
T KOG1845|consen 445 IKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSE 524 (775)
T ss_pred hcccCCCCcccccCCCCCccCCccccCCcchhhcccceeeecCCCccccccccceecccccccCCCccccccccccccch
Confidence 34445788999888999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccc
Q 004612 519 ARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD 549 (742)
Q Consensus 519 ~~L~~~ld~YW~~~~~~~Gy~~~~~~~~~~~ 549 (742)
..+.++++.||...|++|+|.........+.
T Consensus 525 s~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~ 555 (775)
T KOG1845|consen 525 SRDKQSLNTYEEKKCLRIDEAGRQLQKERES 555 (775)
T ss_pred hhhhhcccccccccccccCccchhhhhhhcc
Confidence 9999999999999999999999876665544
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.6e-22 Score=233.34 Aligned_cols=269 Identities=24% Similarity=0.320 Sum_probs=206.7
Q ss_pred eEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccccccccCCeEEEEeeecCCCCCCCceeeeeechhhhcc
Q 004612 189 MLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRS 268 (742)
Q Consensus 189 ~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g~~g~~~t~SiglLS~tfl~~ 268 (742)
+|++.|||+||+++++..+..|+. ....+|+||+|+|+.+|++|+++.++|+..+ +++++++|++|++.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~-----~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~------~~s~~~~sqt~~e~ 69 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV-----GLYGIGDYGNGLKSGSMRIGKDFILFTKKES------TMSCLFLSQTFHES 69 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc-----cccccccccCcccccccccCcccceeecccc------ccceeeeecccccc
Confidence 578999999999999999998843 3458999999999999999999999999754 68999999999999
Q ss_pred CCCCceEEeccccccchhHHHHHhhccchhhhhhhHhhhhcCCCCChHHHHHHhhcc-CCCe-eEEEEeccccccCCcee
Q 004612 269 TGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLM-KDHG-TRIIIYNLWEDDQGLLE 346 (742)
Q Consensus 269 ~g~ddIvVPm~dye~~~~~w~~~i~~~~~dw~~nL~~IlkySPf~sE~eLl~qf~~I-g~~G-T~III~NLwe~~dG~~E 346 (742)
+..+.++||++.|+..+..-. .+.+..++++|+.+|+|..++.++.+++.+ +..| |.+||+|+.+-..|.++
T Consensus 70 ~~~~~vvvP~~t~~~~~~~~~------~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnats 143 (775)
T KOG1845|consen 70 EADDAVVVPCPTFNPRTREIV------TEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATS 143 (775)
T ss_pred cccccceeccccccccccccc------ccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcc
Confidence 999999999999986654321 266778899999999999999999999988 6666 99999999999999999
Q ss_pred ecCCCCcccccccCCcchhhhhhhhccCCCcchhhhhHHHHHHHHHHHhhcCCCceEEEEcCeeeccccccccccccccc
Q 004612 347 LDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKV 426 (742)
Q Consensus 347 LDFdtD~~DI~i~g~~~d~k~~q~ak~~p~~~~~~~~~~SLRaYLSILYLRfpprfkIiLnGqkVep~~i~~Dl~~~e~~ 426 (742)
+||..|+.||+|.++..+ +++ . +.|+.++|.. |.|+|++++..|++.+++.+.-
T Consensus 144 hk~a~~a~aeLldnalDE---------i~~-------~---~tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg----- 197 (775)
T KOG1845|consen 144 HKWAKGAIAELLDNALDE---------ITN-------G---ATFVRVDYIN--PVMDIFIRALVVQLKRISDDGG----- 197 (775)
T ss_pred cccccChhhhhccccccc---------ccc-------c---cceEEeeeec--ccccccceeEEeeccceecccc-----
Confidence 999999999998765422 111 1 2448888887 9999999999999987554421
Q ss_pred cccCCCC----CCCC--CCCcc-ceeeEEeecccCcccccccCceEEEecCcccchhhcccccCCCCCcceeeeeccccc
Q 004612 427 TYRPQPG----ASGI--PTDLH-MAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFV 499 (742)
Q Consensus 427 ~YrPq~~----~~~L--P~~~~-~~~~itiGfl~~~~~~~~~qGfyVYhnnRLI~~f~~Vw~~~~s~GrGVIGVleanfl 499 (742)
..+|+.. ..+. ....+ ...+...||.+... --|-.+|+-.|.-. ..+.++.+.||+|..+||
T Consensus 198 ~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~----rlGa~~i~~~R~~~-------~~~~kstqsiglls~tfL 266 (775)
T KOG1845|consen 198 GMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTM----RLGADAIVFSRCES-------RRGLKSTQSIGLLSYTFL 266 (775)
T ss_pred ccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchh----hhccceeEeehhhh-------hccCCcceeEEEEEEeee
Confidence 1111110 0000 00111 11233455554432 25888888888722 334556799999999999
Q ss_pred CCCCcccchhhHH
Q 004612 500 EPAHDKQGFERTT 512 (742)
Q Consensus 500 ePthnKQdFe~t~ 512 (742)
++|+ |+||-...
T Consensus 267 ~~t~-~~d~iv~~ 278 (775)
T KOG1845|consen 267 RKTG-KRDFIVPM 278 (775)
T ss_pred cccc-CCceeEec
Confidence 9999 99998877
No 3
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-17 Score=189.88 Aligned_cols=116 Identities=27% Similarity=0.473 Sum_probs=98.9
Q ss_pred CCccccCCCcceeeecchhhhcccccccCHHHHHHHhhccchhhhhc-------------CCceeEEEEEEccCCCceeE
Q 004612 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRML 190 (742)
Q Consensus 124 ~~~~~~~~~l~~~~vhp~fLhSnsTsh~w~f~AIAELVDNSiDA~~a-------------gAt~V~IdI~~~~~~g~~~L 190 (742)
..|++++++|.++++|.-| |++.+| |+|||.||.||++. +...++|.|..++ .+.+|
T Consensus 7 ~~Fq~ev~~ll~lmihSlY------SnKeIF--LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk--~~kTL 76 (623)
T COG0326 7 RGFQAEVKQLLDLMIHSLY------SNKEIF--LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDK--DNKTL 76 (623)
T ss_pred hhhhHHHHHHHHHHHHhcc------CCcHHH--HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcc--cCCEE
Confidence 3589999999999999999 999999 99999999999862 1225788887776 56899
Q ss_pred EEEEcCCCCCHHHHHhhhh-ccccccc----------cCCcccCcccccccccccccCCeEEEEeeecCCC
Q 004612 191 LIEDNGGGMNPDKMRHCMS-LGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKD 250 (742)
Q Consensus 191 ~I~DNG~GM~~eeL~~~l~-~G~SsK~----------r~~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g~~ 250 (742)
+|.|||+||+++|+++.+. ++.|... ++...|||||+||++|+| ++++|+|+||+.+.+
T Consensus 77 tI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~ 146 (623)
T COG0326 77 TISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGED 146 (623)
T ss_pred EEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCC
Confidence 9999999999999999875 7766431 235679999999999998 999999999998854
No 4
>PRK05218 heat shock protein 90; Provisional
Probab=99.74 E-value=8.7e-18 Score=193.30 Aligned_cols=114 Identities=26% Similarity=0.464 Sum_probs=90.1
Q ss_pred CCccccCCCcceeeecchhhhcccccccCHHHHHHHhhccchhhhhc-------------CCceeEEEEEEccCCCceeE
Q 004612 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRML 190 (742)
Q Consensus 124 ~~~~~~~~~l~~~~vhp~fLhSnsTsh~w~f~AIAELVDNSiDA~~a-------------gAt~V~IdI~~~~~~g~~~L 190 (742)
..|++++.++.++.+|..| ++...| |+|||+||+||+.. ++....|.|..+. +...|
T Consensus 6 ~~Fq~e~~~ll~ll~~~LY------s~~~v~--lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i 75 (613)
T PRK05218 6 GEFQAEVKQLLHLMIHSLY------SNKEIF--LRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTL 75 (613)
T ss_pred eehhHhHHHHHHHHhhhhc------CCchHH--HHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeE
Confidence 4689999999999999888 565555 99999999999752 3445677776654 34579
Q ss_pred EEEEcCCCCCHHHHHhhh-hccccccc-----------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004612 191 LIEDNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (742)
Q Consensus 191 ~I~DNG~GM~~eeL~~~l-~~G~SsK~-----------r~~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g 248 (742)
.|.|||+||+.++|..++ ++|+|.+. .+...||+||+||+++ |.+|++|+|.||+.+
T Consensus 76 ~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~-f~va~~v~V~Sr~~~ 144 (613)
T PRK05218 76 TISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSA-FMVADKVTVITRSAG 144 (613)
T ss_pred EEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhh-hhccCEEEEEEcCCC
Confidence 999999999999999876 58887421 1346799999999875 459999999999865
No 5
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.69 E-value=8.1e-18 Score=158.75 Aligned_cols=93 Identities=37% Similarity=0.607 Sum_probs=79.2
Q ss_pred HHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc--CCcccCccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK--AANTIGQYGNGFK 230 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r--~~~~IGrfGvGfK 230 (742)
+..||+|||+||+|| .|+.|.|.|.... .+...|.|.|||.||++++|..++.+|.+.+.. ....+|+||+|+|
T Consensus 3 ~~~al~ElI~Ns~DA---~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k 78 (137)
T PF13589_consen 3 PEDALRELIDNSIDA---GATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLK 78 (137)
T ss_dssp CTHHHHHHHHHHHHH---HHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCG
T ss_pred HHHHHHHHHHHHHHc---cCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHH
Confidence 358999999999999 6888888887654 466899999999999999999999999998752 4678999999999
Q ss_pred ccccccCCeEEEEeeecCC
Q 004612 231 TSTMRLGADVIVFSCCCGK 249 (742)
Q Consensus 231 sAsmrLG~~V~V~SK~~g~ 249 (742)
.|++++|+.+.|+|++.+.
T Consensus 79 ~A~~~~~~~~~v~S~~~~~ 97 (137)
T PF13589_consen 79 LAIFSLGDRVEVISKTNGE 97 (137)
T ss_dssp GGGGGTEEEEEEEEESTTS
T ss_pred HHHHHhcCEEEEEEEECCC
Confidence 9999999999999998864
No 6
>PRK14083 HSP90 family protein; Provisional
Probab=99.62 E-value=1.7e-15 Score=173.94 Aligned_cols=113 Identities=21% Similarity=0.409 Sum_probs=87.8
Q ss_pred CCccccCCCcceeeecchhhhcccccccCHHHHHHHhhccchhhhhcC-------CceeEEEEEEccCCCceeEEEEEcC
Q 004612 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-------ATYSNIDMLINRKDGSRMLLIEDNG 196 (742)
Q Consensus 124 ~~~~~~~~~l~~~~vhp~fLhSnsTsh~w~f~AIAELVDNSiDA~~ag-------At~V~IdI~~~~~~g~~~L~I~DNG 196 (742)
..||+++.++.++..+..| ++.+ .+|+|||.||+||+... ...|.|.+. + .+...|.|.|||
T Consensus 3 ~~Fqae~~~ll~ll~~~LY------s~~~--iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d--~~~~~l~I~DnG 71 (601)
T PRK14083 3 HRFQVDLRGVIDLLSRHLY------SSPR--VYVRELLQNAVDAITARRALDPTAPGRIRIELT-D--AGGGTLIVEDNG 71 (601)
T ss_pred ccchHhHHHHHHHHHHhhc------CCcH--HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-c--CCCcEEEEEeCC
Confidence 4689999999998888777 5554 55999999999997521 113444442 3 356899999999
Q ss_pred CCCCHHHHHhhh-hcccccccc------CCcccCcccccccccccccCCeEEEEeeecC
Q 004612 197 GGMNPDKMRHCM-SLGYSAKSK------AANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (742)
Q Consensus 197 ~GM~~eeL~~~l-~~G~SsK~r------~~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g 248 (742)
+||+.+++.+.+ .+|.|.+.. ....||+||+||++++| +|++|.|.||..+
T Consensus 72 iGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~ 129 (601)
T PRK14083 72 IGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAK 129 (601)
T ss_pred CCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCC
Confidence 999999999865 699887743 23579999999997766 9999999999864
No 7
>PTZ00130 heat shock protein 90; Provisional
Probab=99.54 E-value=2.6e-15 Score=175.55 Aligned_cols=115 Identities=22% Similarity=0.369 Sum_probs=94.9
Q ss_pred CCccccCCCcceeeecchhhhcccccccCHHHHHHHhhccchhhhhc-------------CCceeEEEEEEccCCCceeE
Q 004612 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRML 190 (742)
Q Consensus 124 ~~~~~~~~~l~~~~vhp~fLhSnsTsh~w~f~AIAELVDNSiDA~~a-------------gAt~V~IdI~~~~~~g~~~L 190 (742)
..||+++.+|.++.+|..| +++.+| |+|||.||.||++. ....+.|.|..+. ...+|
T Consensus 68 ~~FQaEv~~Lldiii~sLY------S~keIF--LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~--~~~tL 137 (814)
T PTZ00130 68 HQYQTEVTRLMDIIVNSLY------TQKEVF--LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNIL 137 (814)
T ss_pred eehHHHHHHHHHHHhhccC------CCCCce--eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECC--CCCEE
Confidence 3589999999999999999 888888 99999999999851 1235678887654 45799
Q ss_pred EEEEcCCCCCHHHHHhhh-hccccccc----------cCCcccCcccccccccccccCCeEEEEeeecCC
Q 004612 191 LIEDNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (742)
Q Consensus 191 ~I~DNG~GM~~eeL~~~l-~~G~SsK~----------r~~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g~ 249 (742)
+|.|||+||+.++|.+.+ .+|+|... .+...|||||+||++|+| ++++|+|+||+.+.
T Consensus 138 tI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~Trs~~~ 206 (814)
T PTZ00130 138 SITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNND 206 (814)
T ss_pred EEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee-ecCEEEEEEcCCCC
Confidence 999999999999999876 48776421 124589999999999887 99999999998653
No 8
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.50 E-value=1.2e-14 Score=169.14 Aligned_cols=113 Identities=21% Similarity=0.331 Sum_probs=93.0
Q ss_pred CccccCCCcceeeecchhhhcccccccCHHHHHHHhhccchhhhhc-------------CCceeEEEEEEccCCCceeEE
Q 004612 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (742)
Q Consensus 125 ~~~~~~~~l~~~~vhp~fLhSnsTsh~w~f~AIAELVDNSiDA~~a-------------gAt~V~IdI~~~~~~g~~~L~ 191 (742)
.||+++++|.++.+|..| +++.+| |+|||+||.||+.. ....+.|.|..+. ....|.
T Consensus 6 ~Fqae~~~Ll~lli~slY------s~~~if--lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~L~ 75 (701)
T PTZ00272 6 AFQAEINQLMSLIINTFY------SNKEIF--LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDK--ENKTLT 75 (701)
T ss_pred ecHHHHHHHHHHHHhccc------CCccHh--HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcC--CCCEEE
Confidence 589999999999999999 888988 99999999999752 1234677776654 456899
Q ss_pred EEEcCCCCCHHHHHhhhh-ccccccc---------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004612 192 IEDNGGGMNPDKMRHCMS-LGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (742)
Q Consensus 192 I~DNG~GM~~eeL~~~l~-~G~SsK~---------r~~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g 248 (742)
|.|||+||+.++|.+.|. +|.|... .+...|||||+||++++| +|.+|.|.||+.+
T Consensus 76 I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~ 141 (701)
T PTZ00272 76 VEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNS 141 (701)
T ss_pred EEECCCCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCC
Confidence 999999999999988764 7776321 123589999999998887 9999999999764
No 9
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.33 E-value=9.5e-12 Score=144.35 Aligned_cols=151 Identities=19% Similarity=0.291 Sum_probs=102.1
Q ss_pred ccCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCC------cccC
Q 004612 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAA------NTIG 223 (742)
Q Consensus 150 h~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~------~~IG 223 (742)
-..|.+||.|||+||+|| ||+.|.|++.. +|...|.|.|||+||+++||.-++.-..++|-... .++|
T Consensus 21 IerPaSVVKELVENSlDA---GAt~I~I~ve~---gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~TlG 94 (638)
T COG0323 21 IERPASVVKELVENSLDA---GATRIDIEVEG---GGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTLG 94 (638)
T ss_pred eecHHHHHHHHHhccccc---CCCEEEEEEcc---CCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhccC
Confidence 377999999999999998 99987777743 67888999999999999999988754444443222 2344
Q ss_pred cccccccccccccCCeEEEEeeecCCC-CCCCceeeeeechhhhccCC---CCceEEeccccccchhHHHHHhhccchhh
Q 004612 224 QYGNGFKTSTMRLGADVIVFSCCCGKD-GKSPTRSIGLLSYTFLRSTG---KEDIVVPMLDYEGSQQEWKKIIRSSLDDW 299 (742)
Q Consensus 224 rfGvGfKsAsmrLG~~V~V~SK~~g~~-g~~~t~SiglLS~tfl~~~g---~ddIvVPm~dye~~~~~w~~~i~~~~~dw 299 (742)
.-|-. .++++-..+++|.||+.+.. |.+....-|.+. +.++... -..|.|--++|+.+... +...+...++
T Consensus 95 FRGEA--L~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~-~~~~p~a~~~GTtVeV~dLF~NtPaRr--Kflks~~~E~ 169 (638)
T COG0323 95 FRGEA--LASIASVSRLTITSRTAEASEGTQIYAEGGGME-VTVKPAAHPVGTTVEVRDLFYNTPARR--KFLKSEKTEF 169 (638)
T ss_pred ccHHH--HHHHHhhheeEEEeecCCcCceEEEEecCCccc-ccccCCCCCCCCEEEehHhhccChHHH--HhhcccHHHH
Confidence 44444 47888999999999976544 333333322221 1222221 33588999999987543 2445556667
Q ss_pred hhhhHhhhhcCC
Q 004612 300 NRNVETIVQWSP 311 (742)
Q Consensus 300 ~~nL~~IlkySP 311 (742)
.+..++|..|+.
T Consensus 170 ~~i~~vv~r~AL 181 (638)
T COG0323 170 GHITELINRYAL 181 (638)
T ss_pred HHHHHHHHHHHh
Confidence 766666655543
No 10
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.29 E-value=1.5e-11 Score=142.16 Aligned_cols=91 Identities=21% Similarity=0.353 Sum_probs=73.4
Q ss_pred ccCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccC------CcccC
Q 004612 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTIG 223 (742)
Q Consensus 150 h~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~------~~~IG 223 (742)
-..|.++|.|||+||+|| +|+.|.|.+.. ++...|.|.|||+||+++++..++..+.++|... ....|
T Consensus 20 I~~~~svvkElveNsiDA---gat~I~v~i~~---~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~G 93 (617)
T PRK00095 20 VERPASVVKELVENALDA---GATRIDIEIEE---GGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLG 93 (617)
T ss_pred ccCHHHHHHHHHHHHHhC---CCCEEEEEEEe---CCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCC
Confidence 378899999999999998 89998888843 4667999999999999999999887666666432 14678
Q ss_pred cccccccccccccCCeEEEEeeecC
Q 004612 224 QYGNGFKTSTMRLGADVIVFSCCCG 248 (742)
Q Consensus 224 rfGvGfKsAsmrLG~~V~V~SK~~g 248 (742)
..|.|+. ++....+++|.||+.+
T Consensus 94 frGeAL~--sI~~vs~l~i~s~~~~ 116 (617)
T PRK00095 94 FRGEALP--SIASVSRLTLTSRTAD 116 (617)
T ss_pred cchhHHH--hhhhceEEEEEEecCC
Confidence 8888874 4445568999999864
No 11
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=3.8e-11 Score=127.84 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=70.4
Q ss_pred ccCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccC------CcccC
Q 004612 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTIG 223 (742)
Q Consensus 150 h~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~------~~~IG 223 (742)
-..+..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++...+..++++|... ....|
T Consensus 20 i~~~~~~l~eLi~Na~dA---~a~~I~i~~~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G 93 (312)
T TIGR00585 20 IERPASVVKELVENSLDA---GATRIDVEIEE---GGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLG 93 (312)
T ss_pred hhhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccC
Confidence 378899999999999998 88988887754 2445699999999999999999887556555322 24678
Q ss_pred cccccccccccccCCeEEEEeee
Q 004612 224 QYGNGFKTSTMRLGADVIVFSCC 246 (742)
Q Consensus 224 rfGvGfKsAsmrLG~~V~V~SK~ 246 (742)
..|.||. +++...+++|.||+
T Consensus 94 ~rG~al~--si~~~s~~~i~S~~ 114 (312)
T TIGR00585 94 FRGEALA--SISSVSRLTITTKT 114 (312)
T ss_pred ccchHHH--HHHhhCcEEEEEee
Confidence 8899884 44555699999997
No 12
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.5e-12 Score=143.12 Aligned_cols=117 Identities=23% Similarity=0.398 Sum_probs=97.1
Q ss_pred CCCccccCCCcceeeecchhhhcccccccCHHHHHHHhhccchhhhh-----------cCCceeEEEEEEccCCCceeEE
Q 004612 123 SGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVC-----------NGATYSNIDMLINRKDGSRMLL 191 (742)
Q Consensus 123 ~~~~~~~~~~l~~~~vhp~fLhSnsTsh~w~f~AIAELVDNSiDA~~-----------agAt~V~IdI~~~~~~g~~~L~ 191 (742)
...||+++.++..+.++..| ||+.+| ++|||.||.||++ .......|.|+.++ ....|+
T Consensus 36 t~~fqaE~~qLm~lii~s~Y------S~kEvF--lRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk--~~~tlt 105 (656)
T KOG0019|consen 36 THEFQAETNQLMDIVAKSLY------SHKEVF--LRELISNASDALEKLRYLELKGDEKALPELEIRIITNK--DKRTIT 105 (656)
T ss_pred ceehhhhHHhHHHHHHHHhh------cchHHH--HHhhhccccchHHHHHHHhhcCccccccceeEEeccCC--CcceEE
Confidence 44689999999999999988 889999 9999999999975 11346788887776 578999
Q ss_pred EEEcCCCCCHHHHHhhhh-cccccc----------ccCCcccCcccccccccccccCCeEEEEeeecCCC
Q 004612 192 IEDNGGGMNPDKMRHCMS-LGYSAK----------SKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKD 250 (742)
Q Consensus 192 I~DNG~GM~~eeL~~~l~-~G~SsK----------~r~~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g~~ 250 (742)
|.|.|+||+.+||.++++ +..|.. ..+.+.|||||+||++|++ .+.+|.|+||+.+.+
T Consensus 106 i~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e 174 (656)
T KOG0019|consen 106 IQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE 174 (656)
T ss_pred EEecCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc
Confidence 999999999999999985 544421 1234689999999999987 999999999998753
No 13
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.8e-12 Score=139.10 Aligned_cols=114 Identities=22% Similarity=0.365 Sum_probs=91.7
Q ss_pred CccccCCCcceeeecchhhhcccccccCHHHHHHHhhccchhhhhc-------------CCceeEEEEEEccCCCceeEE
Q 004612 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (742)
Q Consensus 125 ~~~~~~~~l~~~~vhp~fLhSnsTsh~w~f~AIAELVDNSiDA~~a-------------gAt~V~IdI~~~~~~g~~~L~ 191 (742)
.||+++++|-.+-|+..| .++.+| ++|||.||.||++. ....+.|.|..++ .+..|.
T Consensus 76 ~FQaEVnRmMklIINSLY------~NKeIF--LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dk--e~klLh 145 (785)
T KOG0020|consen 76 EFQAEVNRMMKLIINSLY------RNKEIF--LRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADK--EKKLLH 145 (785)
T ss_pred hHHHHHHHHHHHHHHHHh------hhhHHH--HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeech--hhCeee
Confidence 379999999999999988 789999 99999999999751 1235677776665 578999
Q ss_pred EEEcCCCCCHHHHHhhhh-c---cccc---cc---c-----CCcccCcccccccccccccCCeEEEEeeecCC
Q 004612 192 IEDNGGGMNPDKMRHCMS-L---GYSA---KS---K-----AANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (742)
Q Consensus 192 I~DNG~GM~~eeL~~~l~-~---G~Ss---K~---r-----~~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g~ 249 (742)
|.|.|.||++++|.++|+ + |++. |- . ....|||||+||++|++ ++++|.|+||+++.
T Consensus 146 i~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD 217 (785)
T KOG0020|consen 146 ITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDD 217 (785)
T ss_pred EecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCc
Confidence 999999999999999875 4 3331 11 1 12579999999998876 99999999999874
No 14
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.94 E-value=4.4e-09 Score=116.49 Aligned_cols=97 Identities=23% Similarity=0.327 Sum_probs=78.4
Q ss_pred cCHHHHHHHhhccchhhhhcC--CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccc-cCCcccCccc
Q 004612 151 KWALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKS-KAANTIGQYG 226 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~ag--At~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~-~G~SsK~-r~~~~IGrfG 226 (742)
..+.++|.|||+||+|||... -..|.|.|.... .+...+.|.|||.|++.+.+.++|. +-+++|. +.....||+|
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~-~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqG 113 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG-KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQG 113 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC-CceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhcccccc
Confidence 567899999999999998632 235666665442 3567899999999999999999985 6666775 6678999999
Q ss_pred cccccc----ccccCCeEEEEeeecC
Q 004612 227 NGFKTS----TMRLGADVIVFSCCCG 248 (742)
Q Consensus 227 vGfKsA----smrLG~~V~V~SK~~g 248 (742)
+|.+.| .|..|+.+.|+|++.+
T Consensus 114 iGis~avLysQmTtGkPv~V~s~T~~ 139 (538)
T COG1389 114 IGISAAVLYSQMTTGKPVRVISSTGD 139 (538)
T ss_pred ccHHHHHHHHHhcCCCceEEEecCCC
Confidence 998854 6889999999999875
No 15
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.87 E-value=3.4e-09 Score=119.63 Aligned_cols=156 Identities=21% Similarity=0.313 Sum_probs=114.5
Q ss_pred ccCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh-hhhcccccc--ccCCcccCccc
Q 004612 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-CMSLGYSAK--SKAANTIGQYG 226 (742)
Q Consensus 150 h~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~-~l~~G~SsK--~r~~~~IGrfG 226 (742)
-..|..||.|||.||+|| ++|.|.|.+. .+|-..|.|.|||.||.++||.- |=+|.+|.- ..+...|..||
T Consensus 25 I~RP~NAlKEliENSLDA---~ST~I~V~vk---~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~lsTyG 98 (694)
T KOG1979|consen 25 IQRPVNALKELIENSLDA---NSTSIDVLVK---DGGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLSTYG 98 (694)
T ss_pred hhchHHHHHHHHhccccC---CCceEEEEEe---cCCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhhhcC
Confidence 367889999999999998 8998666553 36788899999999999999975 557877742 33445666776
Q ss_pred c-cccccccccCCeEEEEeeecCCC-CCCCceeeeeechhhhccC-CCC--ceEEeccccccchhHHHHHhhccchhhhh
Q 004612 227 N-GFKTSTMRLGADVIVFSCCCGKD-GKSPTRSIGLLSYTFLRST-GKE--DIVVPMLDYEGSQQEWKKIIRSSLDDWNR 301 (742)
Q Consensus 227 v-GfKsAsmrLG~~V~V~SK~~g~~-g~~~t~SiglLS~tfl~~~-g~d--dIvVPm~dye~~~~~w~~~i~~~~~dw~~ 301 (742)
. |=..|+++-+++|+|.||.++.. |.+.++.-|-+-.+ -+.| |++ -|.|.-++|+....+ ..++...+++..
T Consensus 99 FRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~-pKpcAgk~GT~I~vedLFYN~~~Rr--kal~~~~EE~~k 175 (694)
T KOG1979|consen 99 FRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIAT-PKPCAGKQGTIITVEDLFYNMPTRR--KALRNHAEEYRK 175 (694)
T ss_pred ccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccC-CCCccCCCceEEEehHhhccCHHHH--HHhcCcHHHHHH
Confidence 6 55679999999999999998654 67777776654321 1223 333 367888999977543 344566788888
Q ss_pred hhHhhhhcCCCCC
Q 004612 302 NVETIVQWSPFSS 314 (742)
Q Consensus 302 nL~~IlkySPf~s 314 (742)
-++++..|+-+..
T Consensus 176 i~dlv~ryAIHn~ 188 (694)
T KOG1979|consen 176 IMDLVGRYAIHNP 188 (694)
T ss_pred HHHHHHHHheeCC
Confidence 8888878876554
No 16
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.40 E-value=2.8e-07 Score=107.51 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=90.5
Q ss_pred ccCCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhccchhhhhcC-CceeEEEEEEccCCCceeEEE
Q 004612 115 AGDYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLI 192 (742)
Q Consensus 115 ag~y~~~~~~~~~~~~~~l~~~~vhp~-fLhSnsTsh~w~f~AIAELVDNSiDA~~ag-At~V~IdI~~~~~~g~~~L~I 192 (742)
+.+|+..... .-.+++||+.-|. |+- ++...-+...|.||||||+|++.++ |+.|.|.|..+ ..|+|
T Consensus 5 ~~~y~~~~i~----~L~~lE~VrkRP~mYiG--s~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d-----g~I~V 73 (631)
T PRK05559 5 TNNYNADSIE----VLEGLEPVRKRPGMYIG--STDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD-----GSVSV 73 (631)
T ss_pred cCCCCHHHCe----eccchHHHhcCCCceeC--CCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC-----CcEEE
Confidence 3456655432 2267999999997 543 4445778899999999999987664 88888887542 38999
Q ss_pred EEcCCCCCHHHHHh--------hhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004612 193 EDNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (742)
Q Consensus 193 ~DNG~GM~~eeL~~--------~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g 248 (742)
.|||.||+.+.+.. +|. +..++|..+ ....|..|+|++.+. .+...++|.|++.+
T Consensus 74 ~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vN-alS~~l~V~s~r~g 140 (631)
T PRK05559 74 RDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVN-ALSSRLEVEVKRDG 140 (631)
T ss_pred EEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhh-hheeeEEEEEEeCC
Confidence 99999999998887 564 444555432 257899999997654 48889999999765
No 17
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.32 E-value=1.1e-06 Score=100.82 Aligned_cols=97 Identities=28% Similarity=0.382 Sum_probs=70.0
Q ss_pred CHHHHHHHhhccchhhhhcCC--ceeEEEEEEcc-CCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccC-CcccCccc
Q 004612 152 WALGAFAELLDNSLDEVCNGA--TYSNIDMLINR-KDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYG 226 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agA--t~V~IdI~~~~-~~g~~~L~I~DNG~GM~~eeL~~~l~-~G~SsK~r~-~~~IGrfG 226 (742)
.+..+|.|||+||+||+.... ..|.|.+.... .++...|.|.|||.||+++++..+|. |.+++|... ....|.+|
T Consensus 36 ~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~G 115 (535)
T PRK04184 36 ALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQG 115 (535)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCC
Confidence 367899999999999954211 24666665321 13457899999999999999999885 555555433 45679999
Q ss_pred ccccccc----cccCCeEEEEeeecC
Q 004612 227 NGFKTST----MRLGADVIVFSCCCG 248 (742)
Q Consensus 227 vGfKsAs----mrLG~~V~V~SK~~g 248 (742)
+||..+. +..|..+.|.|+..+
T Consensus 116 LGLsiv~~isq~~~G~~I~V~S~~~~ 141 (535)
T PRK04184 116 IGISAAVLYAQMTTGKPVRVISSTGG 141 (535)
T ss_pred cchHHHHHHHHHhcCCcEEEEEecCC
Confidence 9997653 334677999998754
No 18
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.29 E-value=1.6e-06 Score=98.43 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=71.0
Q ss_pred ccCHHHHHHHhhccchhhhhcCC--ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-cccccccc-CCcccCcc
Q 004612 150 HKWALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSK-AANTIGQY 225 (742)
Q Consensus 150 h~w~f~AIAELVDNSiDA~~agA--t~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~-~G~SsK~r-~~~~IGrf 225 (742)
...+..++.|||+||+||+.... ..|.|.+.... .+...|.|.|||.||+++++..+|. |.+++|.. .....|..
T Consensus 26 ~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g-~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~ 104 (488)
T TIGR01052 26 IRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIG-KDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQ 104 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC-CceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCc
Confidence 35677899999999999953211 15666664321 1234799999999999999999885 66666643 34567999
Q ss_pred ccccccc----ccccCCeEEEEeeecC
Q 004612 226 GNGFKTS----TMRLGADVIVFSCCCG 248 (742)
Q Consensus 226 GvGfKsA----smrLG~~V~V~SK~~g 248 (742)
|+|+..+ .+..|..+.|.|+..+
T Consensus 105 GlGLs~~~~isq~~~G~~i~V~S~~~g 131 (488)
T TIGR01052 105 GIGISGAVLYSQMTTGKPVKVISSTGG 131 (488)
T ss_pred cEehhHHHHHHHHcCCceEEEEEecCC
Confidence 9999754 2445667999999865
No 19
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.29 E-value=1.8e-06 Score=77.03 Aligned_cols=91 Identities=22% Similarity=0.331 Sum_probs=67.3
Q ss_pred HHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsA 232 (742)
+..+|.||++||+++...+ ..|.|.+... ++...|.|.|||.||+.+++..++..+++.+. .....+.+|+||+.+
T Consensus 6 l~~il~~ll~Na~~~~~~~-~~I~i~~~~~--~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~ 81 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG-GKIDITIEED--DDHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIV 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEEEEEEE--TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CEEEEEEEEe--cCeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHH
Confidence 4578999999999985432 5667766554 36789999999999999999999875555443 345567799998643
Q ss_pred ---ccccCCeEEEEeeec
Q 004612 233 ---TMRLGADVIVFSCCC 247 (742)
Q Consensus 233 ---smrLG~~V~V~SK~~ 247 (742)
.-.++-++.+.+...
T Consensus 82 ~~~~~~~~g~l~~~~~~~ 99 (111)
T PF02518_consen 82 KQIAERHGGELTIESSEG 99 (111)
T ss_dssp HHHHHHTTEEEEEEEETT
T ss_pred HHHHHHCCCEEEEEEcCC
Confidence 334667777777743
No 20
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.28 E-value=1.3e-06 Score=102.78 Aligned_cols=96 Identities=23% Similarity=0.331 Sum_probs=71.0
Q ss_pred cCHHHHHHHhhccchhhhhcCCc--eeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccC-CcccCccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGAT--YSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYG 226 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt--~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~-~G~SsK~r~-~~~IGrfG 226 (742)
.++..+|.|||+||+||...+.. .|.|.+... +....|.|.|||+||+++++.++|. |.+++|... ....|+.|
T Consensus 45 r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~--g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG 122 (795)
T PRK14868 45 RGLVTAVKEAVDNALDATEEAGILPDIYVEIEEV--GDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQG 122 (795)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCceEEEEEEEC--CCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCc
Confidence 45789999999999999432211 466666432 3345899999999999999999985 766665322 35679999
Q ss_pred ccccccc----cccCCeEEEEeeecC
Q 004612 227 NGFKTST----MRLGADVIVFSCCCG 248 (742)
Q Consensus 227 vGfKsAs----mrLG~~V~V~SK~~g 248 (742)
+|+.++. +..|..+.|.|+..+
T Consensus 123 ~GLglai~~sqlt~GgpI~I~S~~~~ 148 (795)
T PRK14868 123 IGISAAVLYSQLTSGKPAKITSRTQG 148 (795)
T ss_pred eehHHHHHHHHHcCCCcEEEEeCCCC
Confidence 9987653 445888999999765
No 21
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.26 E-value=8.8e-07 Score=103.35 Aligned_cols=108 Identities=24% Similarity=0.276 Sum_probs=81.5
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhccchhhhhc-CCceeEEEEEEccCCCceeEEEEEcCCCCCHHH-----
Q 004612 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK----- 203 (742)
Q Consensus 131 ~~l~~~~vhp~-fLhSnsTsh~w~f~AIAELVDNSiDA~~a-gAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~ee----- 203 (742)
.++++||.-|- |+-+.+ +...|.||||||+|...+ .|+.|.|.|.. + ..|+|.|||.||+.++
T Consensus 13 ~gle~VRkRPgMYigs~~-----~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~----d-~~I~V~DnGrGIp~~~h~~~g 82 (625)
T TIGR01055 13 DGLEPVRKRPGMYTDTTR-----PNHLVQEVIDNSVDEALAGFASIIMVILHQ----D-QSIEVFDNGRGMPVDIHPKEG 82 (625)
T ss_pred cccHHhhcCCCCeeCCCC-----cceeehhhhhcccchhhcCCCCEEEEEEeC----C-CeEEEEecCCccCcccccccC
Confidence 68889999886 664433 346899999999995555 59998888843 2 6899999999999988
Q ss_pred ---HHhhh-hccccccccC---CcccCcccccccccccccCCeEEEEeeecCC
Q 004612 204 ---MRHCM-SLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (742)
Q Consensus 204 ---L~~~l-~~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g~ 249 (742)
+.-+| .+..++|..+ ....|..|+|+++.. .++..++|.|++.+.
T Consensus 83 ~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vn-alS~~l~v~~~r~g~ 134 (625)
T TIGR01055 83 VSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVN-ALSKRVKIKVYRQGK 134 (625)
T ss_pred CcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHH-HhcCeEEEEEEECCe
Confidence 77677 3444455322 257899999997554 488989999998763
No 22
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.15 E-value=1.9e-06 Score=100.81 Aligned_cols=122 Identities=24% Similarity=0.286 Sum_probs=83.2
Q ss_pred ccCCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhccchhhhhcC-CceeEEEEEEccCCCceeEEE
Q 004612 115 AGDYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLI 192 (742)
Q Consensus 115 ag~y~~~~~~~~~~~~~~l~~~~vhp~-fLhSnsTsh~w~f~AIAELVDNSiDA~~ag-At~V~IdI~~~~~~g~~~L~I 192 (742)
+.+|+..... .-.+++||+.-|. |+-+ +...-+.-.|.||||||+|...++ |+.|.|.|.. + ..|.|
T Consensus 5 ~~~Y~~~~i~----~L~~lE~Vr~RPgMYiGs--~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---~--g~I~V 73 (638)
T PRK05644 5 AQEYDASQIQ----VLEGLEAVRKRPGMYIGS--TGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---D--GSITV 73 (638)
T ss_pred cCCCCHHHCe----EecchHHHhcCCCceECC--CChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC---C--CcEEE
Confidence 3456655422 2267899999887 6543 333445567899999999965557 9988888753 2 38999
Q ss_pred EEcCCCCCHHHHH--------hhhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004612 193 EDNGGGMNPDKMR--------HCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (742)
Q Consensus 193 ~DNG~GM~~eeL~--------~~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g 248 (742)
.|||.||+.+.-. ..|. +..++|..+ ....|..|+|+++.. .++..++|.|++.+
T Consensus 74 ~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vn-alS~~~~v~t~r~g 140 (638)
T PRK05644 74 TDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVN-ALSTWLEVEVKRDG 140 (638)
T ss_pred EEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhh-heeceEEEEEEeCC
Confidence 9999999986322 1233 233344322 237899999997654 48888999999765
No 23
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.02 E-value=5.5e-06 Score=97.29 Aligned_cols=110 Identities=26% Similarity=0.318 Sum_probs=76.5
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhccchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHH---
Q 004612 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMR--- 205 (742)
Q Consensus 131 ~~l~~~~vhp~-fLhSnsTsh~w~f~AIAELVDNSiDA~~ag-At~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~--- 205 (742)
.+++|++.-|. |+-+. -..-+.-.|.|||+||+|...++ |+.|.|.|.. ++ .|.|.|||.||+.+.-.
T Consensus 10 ~~lE~vr~RP~mYiGs~--~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~k 82 (654)
T TIGR01059 10 EGLEAVRKRPGMYIGST--GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---DG--SVTVEDNGRGIPVDIHPEEG 82 (654)
T ss_pred cchHHHhcCCCceeCCC--CcchHHhhhHHhhhccccccccCCCCEEEEEEeC---CC--cEEEEEeCCCcCccccCcCC
Confidence 56788888886 55333 22445677999999999955557 9998888853 22 49999999999986211
Q ss_pred -----hhhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004612 206 -----HCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (742)
Q Consensus 206 -----~~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g 248 (742)
..|. +..+.|..+ ....|..|+|+++.. .++..++|.|++.+
T Consensus 83 i~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~in-alS~~l~v~~~~~g 133 (654)
T TIGR01059 83 ISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVN-ALSEWLEVTVFRDG 133 (654)
T ss_pred CCchHHheeeecccCccCCCcceecCCccchhHHHHH-HhcCeEEEEEEECC
Confidence 1232 233344322 256899999997654 48888999999865
No 24
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.00 E-value=5.3e-06 Score=96.02 Aligned_cols=97 Identities=26% Similarity=0.346 Sum_probs=66.6
Q ss_pred hhcccccc--cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhh-hhccccccccC-
Q 004612 143 LHSNATSH--KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHC-MSLGYSAKSKA- 218 (742)
Q Consensus 143 LhSnsTsh--~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~-l~~G~SsK~r~- 218 (742)
.|-.+++. ..+.+||.|||+||+|| ||+.|.|.+.. .|-..|.|.|||+|+++.+..-+ +..-+ +|-.+
T Consensus 9 vhrI~S~qvI~sl~sAVKELvENSiDA---GAT~I~I~~kd---yG~d~IEV~DNG~GI~~~n~~~l~lkh~T-SKi~~f 81 (672)
T KOG1978|consen 9 VHRICSSQVITSLVSAVKELVENSIDA---GATAIDIKVKD---YGSDSIEVSDNGSGISATDFEGLALKHTT-SKIVSF 81 (672)
T ss_pred hhccccCCeeccHHHHHHHHHhcCccc---CCceeeEecCC---CCcceEEEecCCCCCCccchhhhhhhhhh-hcccch
Confidence 34444433 77889999999999998 99987776632 37889999999999999888752 33333 33221
Q ss_pred -----CcccCcccccccccccccCCeEEEEeeecC
Q 004612 219 -----ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (742)
Q Consensus 219 -----~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g 248 (742)
..+.|.-|-.| +++---.+|+|.|++..
T Consensus 82 ~Dl~~l~T~GFRGEAL--SsLCa~~dv~I~Trt~~ 114 (672)
T KOG1978|consen 82 ADLAVLFTLGFRGEAL--SSLCALGDVMISTRSHS 114 (672)
T ss_pred hhhhhhhhhhhHHHHH--HhhhhccceEEEEeecc
Confidence 23455555554 33333378889999863
No 25
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=97.99 E-value=1.5e-05 Score=93.46 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=67.2
Q ss_pred HHHHHHHhhccchhhhhcCC--ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccC-CcccCccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYGNG 228 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agA--t~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~-~G~SsK~r~-~~~IGrfGvG 228 (742)
+.++|.|||+||+||..... ..|.|.+.... .....|.|.|||.||+++++..+|. |-+.+|... ....|..|+|
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g-~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~G 115 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKLG-SDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIG 115 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEECC-CcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCccc
Confidence 44789999999999953211 25666665421 1234699999999999999999986 455555322 3577899999
Q ss_pred ccccc----cccCCeEEEEeeec
Q 004612 229 FKTST----MRLGADVIVFSCCC 247 (742)
Q Consensus 229 fKsAs----mrLG~~V~V~SK~~ 247 (742)
+.++. +..|..+.|.|+..
T Consensus 116 La~a~~vsql~~G~pI~I~S~~g 138 (659)
T PRK14867 116 AAGVLLFSQITTGKPLKITTSTG 138 (659)
T ss_pred HHHHHHHHHHhcCCcEEEEEEcC
Confidence 87543 44688889999864
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.97 E-value=8.8e-06 Score=96.73 Aligned_cols=111 Identities=22% Similarity=0.270 Sum_probs=78.2
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhccchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHH------
Q 004612 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPD------ 202 (742)
Q Consensus 131 ~~l~~~~vhp~-fLhSnsTsh~w~f~AIAELVDNSiDA~~ag-At~V~IdI~~~~~~g~~~L~I~DNG~GM~~e------ 202 (742)
.+++||+.-|- |+-+.... .-+--.+.||||||+|...++ |+.|.|.|..+ ..|+|.|||.||+.+
T Consensus 16 ~gle~VRkRPgMYIGst~~~-~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~d-----gsIsV~DnGrGIPvd~h~~~g 89 (756)
T PRK14939 16 KGLDAVRKRPGMYIGDTDDG-TGLHHMVYEVVDNAIDEALAGHCDDITVTIHAD-----GSVSVSDNGRGIPTDIHPEEG 89 (756)
T ss_pred cccHHHhcCCCCeeCCCCCC-cchhhhhhHhhcccccccccCCCCEEEEEEcCC-----CeEEEEEcCCcccCCcccccC
Confidence 67899999887 66443320 334467899999999955557 89888887431 389999999999987
Q ss_pred ----HHHhhhhccccccccC---CcccCcccccccccccccCCeEEEEeeecCC
Q 004612 203 ----KMRHCMSLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (742)
Q Consensus 203 ----eL~~~l~~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g~ 249 (742)
|+.-+ .+..++|..+ .-..|..|+|++... .+...+.|.+++.+.
T Consensus 90 ~~~~Elvlt-~lhAggKfd~~~ykvSgGlhGvG~svvN-AlS~~l~v~v~r~gk 141 (756)
T PRK14939 90 VSAAEVIMT-VLHAGGKFDQNSYKVSGGLHGVGVSVVN-ALSEWLELTIRRDGK 141 (756)
T ss_pred Cchhhheee-eecccCCCCCCcccccCCccCccceEee-hccCeEEEEEEeCCe
Confidence 33322 2333344321 236799999987544 589999999998663
No 27
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.87 E-value=8.6e-06 Score=94.70 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=62.4
Q ss_pred HHHHhhccchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh--------hhh-ccccccccC---Cccc
Q 004612 156 AFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTI 222 (742)
Q Consensus 156 AIAELVDNSiDA~~ag-At~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~--------~l~-~G~SsK~r~---~~~I 222 (742)
.|.||||||+||..++ |+.|.|.|..+ ..|+|.|||.||+.+.... .|. +-++.|..+ ....
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~~-----g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~ 79 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDKD-----NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSG 79 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeCC-----CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccC
Confidence 3789999999996555 89888887532 2899999999999644321 122 222334322 2478
Q ss_pred CcccccccccccccCCeEEEEeeecCC
Q 004612 223 GQYGNGFKTSTMRLGADVIVFSCCCGK 249 (742)
Q Consensus 223 GrfGvGfKsAsmrLG~~V~V~SK~~g~ 249 (742)
|..|+|+++.. .+...++|.|++.+.
T Consensus 80 G~~G~Gls~vn-alS~~l~v~~~~~g~ 105 (594)
T smart00433 80 GLHGVGASVVN-ALSTEFEVEVARDGK 105 (594)
T ss_pred CcccchHHHHH-HhcCceEEEEEeCCc
Confidence 99999987554 488999999998753
No 28
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.72 E-value=2.3e-05 Score=90.93 Aligned_cols=91 Identities=20% Similarity=0.190 Sum_probs=63.1
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccc---cCCcccCccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKS---KAANTIGQYG 226 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~-~G~SsK~---r~~~~IGrfG 226 (742)
..+..++.|||-||+|| +|+.|.|.+-. ....+.|.|||.||..++|...-. +.+ +|. .+....-.||
T Consensus 20 ~sla~~VeElv~NSiDA---~At~V~v~V~~----~t~sv~ViDdG~G~~rdDl~~lg~ry~T-SK~h~~ndl~~~~tyG 91 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDA---EATCVAVRVNM----ETFSVQVIDDGFGMGRDDLEKLGNRYFT-SKCHSVNDLENPRTYG 91 (1142)
T ss_pred HHHHHHHHHHHhhcccc---CceEEEEEecC----ceeEEEEEecCCCccHHHHHHHHhhhhh-hhceeccccccccccc
Confidence 45678999999999998 99988777633 357899999999999999987653 333 332 1222333444
Q ss_pred c-cccccccccCCeEEEEeeecCC
Q 004612 227 N-GFKTSTMRLGADVIVFSCCCGK 249 (742)
Q Consensus 227 v-GfKsAsmrLG~~V~V~SK~~g~ 249 (742)
. |-..|+++--..+.|+|+..+.
T Consensus 92 fRGeALasIsd~s~l~v~skkk~r 115 (1142)
T KOG1977|consen 92 FRGEALASISDMSSLVVISKKKNR 115 (1142)
T ss_pred cchhhhhhhhhhhhhhhhhhhcCC
Confidence 4 3334666666677788887653
No 29
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.58 E-value=0.00014 Score=83.11 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=70.0
Q ss_pred cccCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccc
Q 004612 149 SHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (742)
Q Consensus 149 sh~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvG 228 (742)
.+....+.+.-|||||+||..+....-+|.+.....++.-.|.|.|||+||+++.+...+..|+|.|. -+.-|+|
T Consensus 424 ~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~-----~~~rGiG 498 (537)
T COG3290 424 QPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN-----TGGRGIG 498 (537)
T ss_pred ChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccC-----CCCCchh
Confidence 33566789999999999997532222234443344467788999999999999999999999999884 3455888
Q ss_pred ccc---cccccCCeEEEEeeec
Q 004612 229 FKT---STMRLGADVIVFSCCC 247 (742)
Q Consensus 229 fKs---AsmrLG~~V~V~SK~~ 247 (742)
++. ..=++|..+.|.+...
T Consensus 499 L~Lvkq~V~~~~G~I~~~s~~~ 520 (537)
T COG3290 499 LYLVKQLVERLGGSIEVESEKG 520 (537)
T ss_pred HHHHHHHHHHcCceEEEeeCCC
Confidence 763 4557888999988743
No 30
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.52 E-value=0.00031 Score=58.51 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=59.1
Q ss_pred HHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccc-
Q 004612 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS- 232 (742)
Q Consensus 154 f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsA- 232 (742)
..++.|||+||+++.......|.|.+... .+...|.|.|+|.||++..+...+... .+.......+.+|+|++.+
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~~--~~~~~v~i~d~g~g~~~~~~~~~~~~~--~~~~~~~~~~~~g~gl~~~~ 77 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVERD--GDHLEIRVEDNGPGIPEEDLERIFERF--SDGSRSRKGGGTGLGLSIVK 77 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHHhhhh--hcCCCCCCCCccccCHHHHH
Confidence 35799999999998432134555555433 345789999999999999998876532 1112234556788998753
Q ss_pred --ccccCCeEEEEeee
Q 004612 233 --TMRLGADVIVFSCC 246 (742)
Q Consensus 233 --smrLG~~V~V~SK~ 246 (742)
..++|..+.+.+..
T Consensus 78 ~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 78 KLVELHGGRIEVESEP 93 (103)
T ss_pred HHHHHcCCEEEEEeCC
Confidence 23356688886654
No 31
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.44 E-value=0.00029 Score=88.27 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=59.4
Q ss_pred HHHHHHhhccchhhhhc--CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh--------hhh-ccccccccC---C
Q 004612 154 LGAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA---A 219 (742)
Q Consensus 154 f~AIAELVDNSiDA~~a--gAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~--------~l~-~G~SsK~r~---~ 219 (742)
.--+-|+||||+|.... .++.|.|.|... ...|+|.|||.||+-+--.. +|. +-+++|..+ .
T Consensus 79 ~kifdEIldNAvDe~~r~g~~~~I~V~I~~~----~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yK 154 (1465)
T PLN03237 79 YKIFDEILVNAADNKQRDPKMDSLRVVIDVE----QNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKK 154 (1465)
T ss_pred hhhHHHHhhhhHhHHhhcCCCCEEEEEEEcC----CCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcce
Confidence 35689999999997522 357777777532 35899999999998652111 122 333444322 2
Q ss_pred cccCcccccccccccccCCeEEEEee
Q 004612 220 NTIGQYGNGFKTSTMRLGADVIVFSC 245 (742)
Q Consensus 220 ~~IGrfGvGfKsAsmrLG~~V~V~SK 245 (742)
..-|+.|+|.+.+- .+...++|.++
T Consensus 155 vSGGlhGVGasvvN-aLS~~f~Vev~ 179 (1465)
T PLN03237 155 TTGGRNGYGAKLTN-IFSTEFVIETA 179 (1465)
T ss_pred eeccccccCccccc-cccCeeEEEEE
Confidence 46899999987554 48899999998
No 32
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.38 E-value=0.00044 Score=58.57 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=59.3
Q ss_pred HHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsA 232 (742)
+..+|.||++|++++.. ....|.|.+... ++...|.|.|+|.||+.+.+...+..++..+. .....+.+|+|++.+
T Consensus 6 l~~~~~~l~~n~~~~~~-~~~~v~i~~~~~--~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~ 81 (111)
T smart00387 6 LRQVLSNLLDNAIKYTP-EGGRITVTLERD--GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIV 81 (111)
T ss_pred HHHHHHHHHHHHHhcCC-CCCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHH
Confidence 45789999999999732 124666666543 35678999999999999999988765544331 223456789998643
Q ss_pred ---ccccCCeEEEEee
Q 004612 233 ---TMRLGADVIVFSC 245 (742)
Q Consensus 233 ---smrLG~~V~V~SK 245 (742)
...++.++.+.+.
T Consensus 82 ~~~~~~~~g~~~~~~~ 97 (111)
T smart00387 82 KKLVELHGGEISVESE 97 (111)
T ss_pred HHHHHHcCCEEEEEec
Confidence 2335555555433
No 33
>PRK10604 sensor protein RstB; Provisional
Probab=97.26 E-value=0.00077 Score=74.42 Aligned_cols=91 Identities=18% Similarity=0.306 Sum_probs=64.7
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
.+..++..||+||+.+ +...|.|.+... ++.-.|.|.|||.||+++++.+.+...+.........-|.+|+|+..
T Consensus 319 ~l~~vl~NLl~NAik~---~~~~I~I~~~~~--~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~i 393 (433)
T PRK10604 319 LMERVLDNLLNNALRY---AHSRVRVSLLLD--GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEEE--CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHH
Confidence 4667899999999997 346677776554 35568999999999999999999875443221111223567999753
Q ss_pred ---cccccCCeEEEEeeec
Q 004612 232 ---STMRLGADVIVFSCCC 247 (742)
Q Consensus 232 ---AsmrLG~~V~V~SK~~ 247 (742)
..-..|.++.|.+...
T Consensus 394 vk~i~~~~gG~i~v~s~~~ 412 (433)
T PRK10604 394 VHSIALAMGGSVNCDESEL 412 (433)
T ss_pred HHHHHHHCCCEEEEEecCC
Confidence 3456788888887743
No 34
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.24 E-value=0.00026 Score=83.25 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhccchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh--
Q 004612 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-- 206 (742)
Q Consensus 131 ~~l~~~~vhp~-fLhSnsTsh~w~f~AIAELVDNSiDA~~ag-At~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~-- 206 (742)
.+++||+.-|. |+-|... .-+.--+.|+||||+|...++ |+.|.|.|.. ...|+|.|||.||+.+--..
T Consensus 14 ~glE~VRkRPgMYIGst~~--~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~-----dgsitV~DnGrGIPv~~h~~~~ 86 (637)
T TIGR01058 14 EGLDAVRKRPGMYIGSTDS--KGLHHLVWEIVDNSVDEVLAGYADNITVTLHK-----DNSITVQDDGRGIPTGIHQDGN 86 (637)
T ss_pred cccHHHhcCCCCeECCCCc--chhheehhhhhcchhhhhhcCCCcEEEEEEcC-----CCeEEEEECCCcccCcccCcCC
Confidence 57888888887 6644332 223344779999999965433 7887777742 24899999999998642111
Q ss_pred ------hhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004612 207 ------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (742)
Q Consensus 207 ------~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g 248 (742)
.|. +....|..+ ...-|..|+|.+..- .+...++|.+++.|
T Consensus 87 ~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvN-AlS~~~~V~v~r~g 137 (637)
T TIGR01058 87 ISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVN-ALSSWLEVTVKRDG 137 (637)
T ss_pred CccceeEEEEecccCcCCCCcccccCCcccccccccc-eeeceEEEEEEECC
Confidence 122 222333221 245699999987544 58899999998765
No 35
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.19 E-value=0.00088 Score=72.79 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=63.1
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
++..+|.+||+||+.+ +...|.|.+... ++.-.|+|.|||.||+++++.+.+...++........-+.+|+|+..
T Consensus 353 ~l~~~l~nli~NA~~~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~i 427 (461)
T PRK09470 353 ALASALENIVRNALRY---SHTKIEVAFSVD--KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAI 427 (461)
T ss_pred HHHHHHHHHHHHHHHh---CCCcEEEEEEEE--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHH
Confidence 3566899999999997 445667766543 34567999999999999999998864443221111234567888764
Q ss_pred c---ccccCCeEEEEeeec
Q 004612 232 S---TMRLGADVIVFSCCC 247 (742)
Q Consensus 232 A---smrLG~~V~V~SK~~ 247 (742)
+ ...+|.++.+.+...
T Consensus 428 v~~~v~~~~G~l~~~s~~~ 446 (461)
T PRK09470 428 VENAIQQHRGWVKAEDSPL 446 (461)
T ss_pred HHHHHHHCCCEEEEEECCC
Confidence 2 345778888887643
No 36
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.15 E-value=0.00099 Score=73.06 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=64.3
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
..+..++..||+||+.+.. ....|.|.+..+ ++.-.|.|.|||.||+++++.+.+...++.+.......+-.|+||.
T Consensus 316 ~~l~~vl~NLl~NAik~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ 392 (430)
T PRK11006 316 DQLRSAISNLVYNAVNHTP-EGTHITVRWQRV--PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA 392 (430)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHH
Confidence 3467889999999999843 223456655443 3456899999999999999999987554432211223345688875
Q ss_pred cc---ccccCCeEEEEeeec
Q 004612 231 TS---TMRLGADVIVFSCCC 247 (742)
Q Consensus 231 sA---smrLG~~V~V~SK~~ 247 (742)
.+ .-..|..+.|.|...
T Consensus 393 ivk~iv~~~gG~i~i~s~~~ 412 (430)
T PRK11006 393 IVKHALSHHDSRLEIESEVG 412 (430)
T ss_pred HHHHHHHHCCCEEEEEecCC
Confidence 32 345788898888743
No 37
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.14 E-value=0.0011 Score=71.64 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=62.5
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
..+..++.+||+||+.+.. ....|.|.+..+ ++.-.|.|.|||.||+++.+.+.+..+++.+......-+..|+|+.
T Consensus 352 ~~l~~~~~nll~Nai~~~~-~~~~I~i~~~~~--~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~ 428 (457)
T TIGR01386 352 QMFRRAISNLLSNALRHTP-DGGTITVRIERR--SDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLA 428 (457)
T ss_pred HHHHHHHHHHHHHHHHcCC-CCceEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHH
Confidence 3366789999999999732 234566666543 4566899999999999999999887555443211112345788876
Q ss_pred cc---ccccCCeEEEEe
Q 004612 231 TS---TMRLGADVIVFS 244 (742)
Q Consensus 231 sA---smrLG~~V~V~S 244 (742)
.+ .-++|..+.+.+
T Consensus 429 i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 429 IVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 43 345788888887
No 38
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.11 E-value=0.0017 Score=66.42 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=62.1
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
..+..++.+||.||+.+.. ....|.|.+... ++.-.|.|.|||.||+++.+.+++...+..+......-+..|+|+.
T Consensus 228 ~~l~~vl~nll~Nai~~~~-~~~~i~i~~~~~--~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~ 304 (333)
T TIGR02966 228 DELRSAFSNLVSNAIKYTP-EGGTITVRWRRD--GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLA 304 (333)
T ss_pred HHHHHHHHHHHHHhheeCC-CCCeEEEEEEEc--CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHH
Confidence 3467789999999999732 234455655443 3457899999999999999999987544322111112234588876
Q ss_pred cc---ccccCCeEEEEeee
Q 004612 231 TS---TMRLGADVIVFSCC 246 (742)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (742)
.+ .-.+|.++.+.+..
T Consensus 305 ~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 305 IVKHVLSRHHARLEIESEL 323 (333)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 42 33478888888874
No 39
>PRK10364 sensor protein ZraS; Provisional
Probab=97.08 E-value=0.0012 Score=72.79 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=64.3
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
..+..++..||+||+++.. ....|.|.+... ++.-.|.|.|||.||+++.+.+.+..+++.|. +..|+|+.
T Consensus 347 ~~l~~il~NLl~NA~k~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~------~g~GlGL~ 417 (457)
T PRK10364 347 DRLTQVLLNLYLNAIQAIG-QHGVISVTASES--GAGVKISVTDSGKGIAADQLEAIFTPYFTTKA------EGTGLGLA 417 (457)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCeEEEEEEEe--CCeEEEEEEECCCCCCHHHHHHHhCccccCCC------CCCcccHH
Confidence 4577889999999999843 345666666543 34578999999999999999999987776652 13588875
Q ss_pred c---cccccCCeEEEEeee
Q 004612 231 T---STMRLGADVIVFSCC 246 (742)
Q Consensus 231 s---AsmrLG~~V~V~SK~ 246 (742)
. ..-.+|.++.|.+..
T Consensus 418 iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 418 VVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 3 234578888887764
No 40
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.04 E-value=0.0023 Score=69.86 Aligned_cols=92 Identities=16% Similarity=0.120 Sum_probs=63.2
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
.+..+|..||+||+.+... ...|.|.+.... ++.-.|.|.|||.||+++++.+.|...++.+. ...-+-+|+||..
T Consensus 272 ~l~qvl~NLl~NAik~~~~-~~~I~i~~~~~~-~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i 347 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTPE-GGTITLSMLHRT-TQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSV 347 (380)
T ss_pred HHHHHHHHHHHHHHhcCCC-CceEEEEEEecC-CCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHH
Confidence 3567899999999998432 234555543322 34467999999999999999999875554332 2223458888853
Q ss_pred c---ccccCCeEEEEeeec
Q 004612 232 S---TMRLGADVIVFSCCC 247 (742)
Q Consensus 232 A---smrLG~~V~V~SK~~ 247 (742)
+ .-.+|..+.|.+...
T Consensus 348 ~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 348 CRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 2 346888999888754
No 41
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.02 E-value=0.0016 Score=71.16 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=63.8
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
.+..++.+||+||+.+.. ....|.|.+... ++.-.|.|.|||.||+++++.+.+.-.++.+.......|..|+|+..
T Consensus 352 ~l~qvl~nll~NAi~~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 428 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTD-SGGSLHISAEQR--DKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAI 428 (466)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEEEEc--CCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHH
Confidence 466789999999999732 223566666543 35568999999999999999998864444332222234567888753
Q ss_pred c---ccccCCeEEEEeeec
Q 004612 232 S---TMRLGADVIVFSCCC 247 (742)
Q Consensus 232 A---smrLG~~V~V~SK~~ 247 (742)
+ .-+.|..+.+.+...
T Consensus 429 v~~i~~~~~G~l~~~s~~~ 447 (466)
T PRK10549 429 CLNIVEAHNGRIIAAHSPF 447 (466)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 2 345788888888643
No 42
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.02 E-value=0.00099 Score=66.49 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=59.7
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
.|+..+|..||+||++|.. ...|.|.+.... +.-.|.|.|||.||+++.+...+..+++.+.... -.|+|+.
T Consensus 227 ~~l~~vl~nLi~NAi~~~~--~~~i~i~~~~~~--~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~GlGL~ 298 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP--GGEITISVRQDD--EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GTGLGLA 298 (336)
T ss_pred HHHHHHHHHHHHHHhccCC--CCeEEEEEEecC--CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CCCccHH
Confidence 5566799999999999832 466666665432 3468999999999999999889887776653211 3456654
Q ss_pred cc---ccccCCeEEEEeee
Q 004612 231 TS---TMRLGADVIVFSCC 246 (742)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (742)
.+ .-..|.++.+.+..
T Consensus 299 i~~~~~~~~~g~i~~~~~~ 317 (336)
T COG0642 299 IVKRIVELHGGTISVESEP 317 (336)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 32 22344556665553
No 43
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0006 Score=79.23 Aligned_cols=112 Identities=25% Similarity=0.282 Sum_probs=74.7
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhccchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHH-----
Q 004612 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK----- 203 (742)
Q Consensus 131 ~~l~~~~vhp~-fLhSnsTsh~w~f~AIAELVDNSiDA~~ag-At~V~IdI~~~~~~g~~~L~I~DNG~GM~~ee----- 203 (742)
.+|++|+.-|- |+-+... ..-+.--+.|+||||+|...+| |+.|.|.+.. ...|+|.|||.||+-+-
T Consensus 15 ~GLEaVRkRPGMYIGst~~-~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~-----d~sisV~DnGRGIPvdiH~~~~ 88 (635)
T COG0187 15 EGLEAVRKRPGMYIGSTGD-GRGLHHLVWEVVDNSIDEALAGYADRIDVTLHE-----DGSISVEDNGRGIPVDIHPKEK 88 (635)
T ss_pred cCcHHhhcCCCceeccCCC-CCcceeeEeEeeechHhHHhhCcCcEEEEEEcC-----CCeEEEEECCCCCccccCCCCC
Confidence 56777777775 5433222 0122233789999999987766 7777776643 36899999999999765
Q ss_pred ---HHhhhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecCC
Q 004612 204 ---MRHCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (742)
Q Consensus 204 ---L~~~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~V~V~SK~~g~ 249 (742)
+.-+|. +....|..+ ...=|..|+|.+ +.-.|...+.|.+++++.
T Consensus 89 ~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~S-VVNALS~~l~v~v~r~gk 140 (635)
T COG0187 89 VSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVS-VVNALSTWLEVEVKRDGK 140 (635)
T ss_pred CCceEEEEEeeccCcccCCCccEeecCCCccceE-EEecccceEEEEEEECCE
Confidence 233344 333344322 135688999975 555699999999998764
No 44
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.95 E-value=0.0015 Score=69.47 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=64.9
Q ss_pred ccCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004612 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (742)
Q Consensus 150 h~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (742)
..|+..++..||+||+.+.. ....|.|.+..+ ++.-.|.|.|||.||+++++...+..++..+ ..-+.+|+|+
T Consensus 245 ~~~l~~il~nLi~NA~k~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~----~~~~g~GlGL 317 (356)
T PRK10755 245 ATLLRLLLRNLVENAHRYSP-EGSTITIKLSQE--DGGAVLAVEDEGPGIDESKCGELSKAFVRMD----SRYGGIGLGL 317 (356)
T ss_pred HHHHHHHHHHHHHHHHhhCC-CCCcEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHhCCCeEeCC----CCCCCcCHHH
Confidence 35677899999999998732 245566766443 3567899999999999999999887554322 1224578887
Q ss_pred ccc---ccccCCeEEEEeeec
Q 004612 230 KTS---TMRLGADVIVFSCCC 247 (742)
Q Consensus 230 KsA---smrLG~~V~V~SK~~ 247 (742)
+.+ .-.+|..+.+.|...
T Consensus 318 ~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 318 SIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 643 345788899888754
No 45
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.90 E-value=0.0022 Score=69.56 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=64.1
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
.++..++.+||.||+.+. .....|.|.+... ++...|+|.|||.||+++++.+.+..+++.+.. ...-+..|+|++
T Consensus 367 ~~l~~vl~nli~Na~~~~-~~~~~i~i~~~~~--~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~GlGL~ 442 (475)
T PRK11100 367 FLLRQALGNLLDNAIDFS-PEGGTITLSAEVD--GEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTGLGLA 442 (475)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcchhHH
Confidence 457788999999999973 2345677766543 456789999999999999999988755543321 112234578876
Q ss_pred cc---ccccCCeEEEEeee
Q 004612 231 TS---TMRLGADVIVFSCC 246 (742)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (742)
.+ ...+|..+.+.+..
T Consensus 443 i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 443 FVREVARLHGGEVTLRNRP 461 (475)
T ss_pred HHHHHHHHCCCEEEEEEcC
Confidence 42 33577888888864
No 46
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.85 E-value=0.0028 Score=68.82 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=61.3
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
++..++..||+||+.+ +...|.|.+... ++.-.|+|.|||.||+++++.+.+..++..... ..-+.+|+|+..
T Consensus 331 ~l~~il~NLl~NA~k~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~--~~~~g~GlGL~i 403 (435)
T PRK09467 331 AIKRALANLVVNAARY---GNGWIKVSSGTE--GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSA--RGSSGTGLGLAI 403 (435)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEec--CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCC--CCCCCeehhHHH
Confidence 4567899999999987 456667766543 345689999999999999999998755532211 112457888753
Q ss_pred c---ccccCCeEEEEeee
Q 004612 232 S---TMRLGADVIVFSCC 246 (742)
Q Consensus 232 A---smrLG~~V~V~SK~ 246 (742)
+ .-..|.++.+.+..
T Consensus 404 v~~i~~~~~g~l~i~~~~ 421 (435)
T PRK09467 404 VKRIVDQHNGKVELGNSE 421 (435)
T ss_pred HHHHHHHCCCEEEEEECC
Confidence 2 23467788887664
No 47
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.71 E-value=0.0041 Score=69.94 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=64.5
Q ss_pred cCHHHHHHHhhccchhhhhc---CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccc
Q 004612 151 KWALGAFAELLDNSLDEVCN---GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN 227 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~a---gAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGv 227 (742)
..+...+.+||+||+++... +...|.|.+... ++.-.|.|.|||.||+++++...|..|++.|.+ ..|..|+
T Consensus 431 ~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~---~~~g~Gl 505 (545)
T PRK15053 431 TEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDE--GDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD---EPGEHGI 505 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEEC--CCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC---CCCCcee
Confidence 34566799999999998531 235566655432 355679999999999999999999888876532 2344588
Q ss_pred ccccc---ccccCCeEEEEeee
Q 004612 228 GFKTS---TMRLGADVIVFSCC 246 (742)
Q Consensus 228 GfKsA---smrLG~~V~V~SK~ 246 (742)
|+..+ .-..|..+.|.|..
T Consensus 506 GL~ivk~iv~~~~G~i~v~s~~ 527 (545)
T PRK15053 506 GLYLIASYVTRCGGVITLEDND 527 (545)
T ss_pred CHHHHHHHHHHcCCEEEEEECC
Confidence 87533 33477788887764
No 48
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.71 E-value=0.0044 Score=66.98 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHHHHHhhccchhhhhcCC-ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGA-TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agA-t~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
+-.+|.+||.||+++...+. ....|.+.....++.-.|+|.|||.||+++.+.+.|...++.|... .+--|+||..
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---~~G~GlGL~i 464 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---RKHIGMGLSV 464 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---CCCCcccHHH
Confidence 56789999999999854331 1223444333334567899999999999999999987555544211 3335777753
Q ss_pred c---ccccCCeEEEEeee
Q 004612 232 S---TMRLGADVIVFSCC 246 (742)
Q Consensus 232 A---smrLG~~V~V~SK~ 246 (742)
+ .-.+|..+.|.|..
T Consensus 465 ~~~iv~~~gG~i~~~s~~ 482 (494)
T TIGR02938 465 AQEIVADHGGIIDLDDDY 482 (494)
T ss_pred HHHHHHHcCCEEEEEECC
Confidence 2 33589999997764
No 49
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.60 E-value=0.0037 Score=73.42 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=61.2
Q ss_pred HHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHH-HHhhhhccccccccCCcccCcccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK-MRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~ee-L~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
+..++.+||+||+++.. ....|.|.+... ++.-.|.|.|||.||+++. ..+.+...++.+. +..|+|+..
T Consensus 580 l~~vl~nLl~NAik~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------~G~GLGL~i 650 (679)
T TIGR02916 580 LERVLGHLVQNALEATP-GEGRVAIRVERE--CGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------AGMGIGVYE 650 (679)
T ss_pred HHHHHHHHHHHHHHhCC-CCCcEEEEEEEc--CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------CCcchhHHH
Confidence 56789999999999842 234567766543 3567899999999999999 5667775555442 346788754
Q ss_pred c---ccccCCeEEEEeee
Q 004612 232 S---TMRLGADVIVFSCC 246 (742)
Q Consensus 232 A---smrLG~~V~V~SK~ 246 (742)
+ .-.+|.++.|.+..
T Consensus 651 ~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 651 CRQYVEEIGGRIEVESTP 668 (679)
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 3 34588899988864
No 50
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.49 E-value=0.0057 Score=72.68 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=64.9
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
.+..+|..||+||+.+.. ....|.|.+..+ ++.-.|.|.|||.||+++++.+.+...++.+......-+..|+||..
T Consensus 597 ~L~~il~NLI~NAik~s~-~~~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~I 673 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSP-EDGLIEVGLSQN--KSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYI 673 (703)
T ss_pred HHHHHHHHHHHHHHHHCC-CCCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHH
Confidence 466789999999999843 234466666543 35667999999999999999999876555432222223357889864
Q ss_pred c---ccccCCeEEEEeeec
Q 004612 232 S---TMRLGADVIVFSCCC 247 (742)
Q Consensus 232 A---smrLG~~V~V~SK~~ 247 (742)
+ ....|..+.+.+...
T Consensus 674 vr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 674 VRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 3 455788888877653
No 51
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.47 E-value=0.0036 Score=78.93 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=62.0
Q ss_pred HHHHHHhhccchhhhhc-----CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh--------hhh-ccccccccC-
Q 004612 154 LGAFAELLDNSLDEVCN-----GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA- 218 (742)
Q Consensus 154 f~AIAELVDNSiDA~~a-----gAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~--------~l~-~G~SsK~r~- 218 (742)
.-.+.|+||||+|...+ .++.|.|.|..+ ...|+|.|||.||+-+--.. +|. +-++.|..+
T Consensus 59 ~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d----~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~ 134 (1388)
T PTZ00108 59 YKIFDEILVNAADNKARDKGGHRMTYIKVTIDEE----NGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDT 134 (1388)
T ss_pred hhhHHHHhhhhhhhhcccCCCCCccEEEEEEecc----CCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCC
Confidence 35679999999997652 367777777432 35899999999997643211 122 233444422
Q ss_pred --CcccCcccccccccccccCCeEEEEeeec
Q 004612 219 --ANTIGQYGNGFKTSTMRLGADVIVFSCCC 247 (742)
Q Consensus 219 --~~~IGrfGvGfKsAsmrLG~~V~V~SK~~ 247 (742)
...-|+.|+|.+.+- .+...+.|.++..
T Consensus 135 ~yKvSGGlhGVGasvvN-alS~~f~Vev~r~ 164 (1388)
T PTZ00108 135 EKRVTGGRNGFGAKLTN-IFSTKFTVECVDS 164 (1388)
T ss_pred ceeeecccccCCccccc-cccceEEEEEEEC
Confidence 246899999987554 4899999999986
No 52
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.42 E-value=0.0076 Score=72.48 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=64.0
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEc-------------cCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLIN-------------RKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK 217 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~-------------~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r 217 (742)
..+..+|..||+||+.+.. ....|.|.+... ..++.-.|.|.|||.||+++++.+.|...++.+.
T Consensus 559 ~~L~qvl~NLl~NAik~~~-~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~- 636 (828)
T PRK13837 559 AELQQVLMNLCSNAAQAMD-GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHHcc-cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC-
Confidence 3467899999999999853 344566666543 1134457999999999999999999875555432
Q ss_pred CCcccCcccccccc---cccccCCeEEEEeee
Q 004612 218 AANTIGQYGNGFKT---STMRLGADVIVFSCC 246 (742)
Q Consensus 218 ~~~~IGrfGvGfKs---AsmrLG~~V~V~SK~ 246 (742)
+-.|+||.. ..-.+|..+.|.|..
T Consensus 637 -----~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 637 -----GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred -----CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 556888753 234588899998874
No 53
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.37 E-value=0.0089 Score=67.78 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=60.7
Q ss_pred HHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsA 232 (742)
+..++..||+||+.+. ...+.|.+... ++.-.|.|.|||.||+++++...+..++..+. .-+-+|+|+..+
T Consensus 379 l~~vl~NLi~NAik~~---~~~i~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~----~~~G~GLGL~Iv 449 (485)
T PRK10815 379 FMEVMGNVLDNACKYC---LEFVEISARQT--DEHLHIVVEDDGPGIPESKRELIFDRGQRADT----LRPGQGLGLSVA 449 (485)
T ss_pred HHHHHHHHHHHHHHhc---CCcEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCC----CCCCcchhHHHH
Confidence 5678999999999983 34566666443 34568999999999999999998875543321 112468887643
Q ss_pred ---ccccCCeEEEEeeec
Q 004612 233 ---TMRLGADVIVFSCCC 247 (742)
Q Consensus 233 ---smrLG~~V~V~SK~~ 247 (742)
.-..|.++.|.+...
T Consensus 450 k~iv~~~gG~i~v~s~~~ 467 (485)
T PRK10815 450 REITEQYEGKISAGDSPL 467 (485)
T ss_pred HHHHHHcCCEEEEEECCC
Confidence 345788888887753
No 54
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.36 E-value=0.0084 Score=66.64 Aligned_cols=87 Identities=23% Similarity=0.357 Sum_probs=62.5
Q ss_pred CHHHHHHHhhccchhhhhc-CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 152 WALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~a-gAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
.+..++.+|++||+++... ....|.|.+... ++.-.|.|.|||.||+++++.+.|..+++.|. +..|+||.
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~------~g~GlGL~ 504 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYR--NGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG------SNRGVGLY 504 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHhCCCccCC------CCCcCcHH
Confidence 3667899999999998532 234566665443 35568999999999999999999987776552 13488875
Q ss_pred cc---ccccCCeEEEEeee
Q 004612 231 TS---TMRLGADVIVFSCC 246 (742)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (742)
.+ .-..|..+.|.+..
T Consensus 505 iv~~iv~~~~G~i~v~s~~ 523 (542)
T PRK11086 505 LVKQSVENLGGSIAVESEP 523 (542)
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 32 34577888887763
No 55
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.33 E-value=0.0025 Score=77.09 Aligned_cols=121 Identities=24% Similarity=0.288 Sum_probs=78.0
Q ss_pred CCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhccchhhhhcC-CceeEEEEEEccCCCceeEEEEE
Q 004612 117 DYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIED 194 (742)
Q Consensus 117 ~y~~~~~~~~~~~~~~l~~~~vhp~-fLhSnsTsh~w~f~AIAELVDNSiDA~~ag-At~V~IdI~~~~~~g~~~L~I~D 194 (742)
+|+...... -.+|++||.-|- |+-+-. -.-+.--|.|+||||+|...++ |+.|.|.|.. ...|+|.|
T Consensus 99 ~Y~a~~I~v----LeGLEaVRkRPGMYIGst~--~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~-----DgsItV~D 167 (903)
T PTZ00109 99 EYDADDIVV----LEGLEAVRKRPGMYIGNTD--EKGLHQLLFEILDNSVDEYLAGECNKITVVLHK-----DGSVEISD 167 (903)
T ss_pred CCChHhCee----hhccHHHhcCCCceeCCCC--CCcceEEEEEEeeccchhhccCCCcEEEEEEcC-----CCeEEEEe
Confidence 588665432 268899999886 553322 1223334789999999987665 7777777743 24799999
Q ss_pred cCCCCCHHHHHh--------hhh-ccccccccC-------------------------------------------Cccc
Q 004612 195 NGGGMNPDKMRH--------CMS-LGYSAKSKA-------------------------------------------ANTI 222 (742)
Q Consensus 195 NG~GM~~eeL~~--------~l~-~G~SsK~r~-------------------------------------------~~~I 222 (742)
||.||+-+.-.+ +|. +....|..+ ...-
T Consensus 168 nGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSG 247 (903)
T PTZ00109 168 NGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSS 247 (903)
T ss_pred CCccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecC
Confidence 999998743221 122 111111100 1357
Q ss_pred CcccccccccccccCCeEEEEeeecCC
Q 004612 223 GQYGNGFKTSTMRLGADVIVFSCCCGK 249 (742)
Q Consensus 223 GrfGvGfKsAsmrLG~~V~V~SK~~g~ 249 (742)
|..|+|.+ +.-.|...+.|.+++.|.
T Consensus 248 GLHGVG~S-VVNALS~~l~VeV~RdGK 273 (903)
T PTZ00109 248 GLHGVGLS-VVNALSSFLKVDVFKGGK 273 (903)
T ss_pred cCCCccee-eeeeccCeEEEEEEECCE
Confidence 89999986 445699999999998763
No 56
>PRK09835 sensor kinase CusS; Provisional
Probab=96.28 E-value=0.01 Score=65.13 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=61.3
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
.+..+|.+||+||+.+.. ....|.|.+... ++.-.|.|.|||.||+++++...+...++........-+.+|+||..
T Consensus 375 ~l~~vl~nll~Na~~~~~-~~~~I~i~~~~~--~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i 451 (482)
T PRK09835 375 MLRRAISNLLSNALRYTP-AGEAITVRCQEV--DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAI 451 (482)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCeEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHH
Confidence 467889999999999732 233566666543 34568999999999999999988864333221111122457888743
Q ss_pred ---cccccCCeEEEEee
Q 004612 232 ---STMRLGADVIVFSC 245 (742)
Q Consensus 232 ---AsmrLG~~V~V~SK 245 (742)
-.-.+|.++.|.+.
T Consensus 452 ~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 452 VKSIVVAHKGTVAVTSD 468 (482)
T ss_pred HHHHHHHCCCEEEEEEC
Confidence 24457888888775
No 57
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.23 E-value=0.0089 Score=66.14 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=60.0
Q ss_pred HHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc-
Q 004612 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT- 231 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs- 231 (742)
+..++.+||+||+.+... ...|.|.+.... ++.-.|.|.|||.||+++.+...+..+++.+. +..|+|+..
T Consensus 501 l~~~~~nli~na~~~~~~-~~~i~v~~~~~~-~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~------~g~glGL~~~ 572 (607)
T PRK11360 501 LKQVLLNILINAVQAISA-RGKIRIRTWQYS-DGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA------KGTGLGLALS 572 (607)
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEEEEcC-CCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC------CCCchhHHHH
Confidence 677899999999998532 335666654432 12278999999999999999988876655442 134667643
Q ss_pred --cccccCCeEEEEeee
Q 004612 232 --STMRLGADVIVFSCC 246 (742)
Q Consensus 232 --AsmrLG~~V~V~SK~ 246 (742)
..-.+|.++.|.+..
T Consensus 573 ~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 573 QRIINAHGGDIEVESEP 589 (607)
T ss_pred HHHHHHcCCEEEEEEcC
Confidence 233578888888764
No 58
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=96.21 E-value=0.012 Score=61.90 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=58.8
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEcc----CCC----ceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccC
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINR----KDG----SRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIG 223 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~----~~g----~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IG 223 (742)
.+..++..||+||+.+.......|.|.+.... .++ ...|.|.|||.||+++.+.+.|..+++.+. +
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~------~ 310 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC------C
Confidence 46788999999999985223444555442210 001 236899999999999999888875555442 1
Q ss_pred ccccccc---ccccccCCeEEEEeee
Q 004612 224 QYGNGFK---TSTMRLGADVIVFSCC 246 (742)
Q Consensus 224 rfGvGfK---sAsmrLG~~V~V~SK~ 246 (742)
--|+||. ......|..+.|.+..
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEecC
Confidence 3477764 2344578888888763
No 59
>PRK10337 sensor protein QseC; Provisional
Probab=96.10 E-value=0.014 Score=63.90 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=57.8
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
.+..++.+||+||+.+.. ....|.|.+.. ..|+|.|||.||+++++...+...+..+. ...+.+|+|+..
T Consensus 352 ~l~~vl~Nli~NA~k~~~-~~~~i~i~~~~------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~i 421 (449)
T PRK10337 352 LLSLLVRNLLDNAIRYSP-QGSVVDVTLNA------RNFTVRDNGPGVTPEALARIGERFYRPPG---QEATGSGLGLSI 421 (449)
T ss_pred HHHHHHHHHHHHHHhhCC-CCCeEEEEEEe------eEEEEEECCCCCCHHHHHHhcccccCCCC---CCCCccchHHHH
Confidence 456688999999999732 12345554432 37999999999999999998864443221 123457899753
Q ss_pred c---ccccCCeEEEEeee
Q 004612 232 S---TMRLGADVIVFSCC 246 (742)
Q Consensus 232 A---smrLG~~V~V~SK~ 246 (742)
+ ....|.++.+.+..
T Consensus 422 v~~i~~~~gg~l~~~s~~ 439 (449)
T PRK10337 422 VRRIAKLHGMNVSFGNAP 439 (449)
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 2 34578888887764
No 60
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.99 E-value=0.015 Score=69.61 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=62.3
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
.++..+|..||+||+.+.. ...|.|.+... ++.-.|.|.|||.||+++++.+.+...+..+. ..+-.|+||.
T Consensus 512 ~~l~~il~NLl~NAik~~~--~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~ 583 (921)
T PRK15347 512 LRLRQILVNLLGNAVKFTE--TGGIRLRVKRH--EQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----HSQGTGLGLT 583 (921)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCCEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC----CCCCCchHHH
Confidence 3467889999999999842 34566666543 35678999999999999999998874443321 2345688875
Q ss_pred cc---ccccCCeEEEEeee
Q 004612 231 TS---TMRLGADVIVFSCC 246 (742)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (742)
.+ .-.+|..+.|.|..
T Consensus 584 i~~~~~~~~gG~i~i~s~~ 602 (921)
T PRK15347 584 IASSLAKMMGGELTLFSTP 602 (921)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 33 33477888887764
No 61
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.96 E-value=0.0059 Score=71.74 Aligned_cols=84 Identities=21% Similarity=0.255 Sum_probs=57.1
Q ss_pred HHHhhccchhhhhc---C-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh-----------hhh-ccccccccC--
Q 004612 157 FAELLDNSLDEVCN---G-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-----------CMS-LGYSAKSKA-- 218 (742)
Q Consensus 157 IAELVDNSiDA~~a---g-At~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~-----------~l~-~G~SsK~r~-- 218 (742)
+.|+||||+|...+ + ++.|.|.+. + ..|+|.|||.||+-+.-.+ .|. +-...|..+
T Consensus 50 ~~EIldNavDe~~~~~~g~~~~I~V~i~-d-----gsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~y 123 (602)
T PHA02569 50 IDEIIDNSVDEAIRTNFKFANKIDVTIK-N-----NQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTN 123 (602)
T ss_pred eehhhhhhhhhhhccCCCCCcEEEEEEc-C-----CEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcc
Confidence 57999999998665 3 778777774 2 4799999999998643211 122 222344321
Q ss_pred CcccCcccccccccccccCCeEEEEeeec
Q 004612 219 ANTIGQYGNGFKTSTMRLGADVIVFSCCC 247 (742)
Q Consensus 219 ~~~IGrfGvGfKsAsmrLG~~V~V~SK~~ 247 (742)
...-|+.|+|.+.+ -.+...+.|.++..
T Consensus 124 kvSGGlhGVG~svv-NaLS~~~~V~v~~~ 151 (602)
T PHA02569 124 RVTGGMNGVGSSLT-NFFSVLFIGETCDG 151 (602)
T ss_pred eeeCCcCCccceee-eccchhhheEEEcC
Confidence 23579999998754 45888888887654
No 62
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.94 E-value=0.02 Score=68.31 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=60.3
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccC-CC--ceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRK-DG--SRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~-~g--~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvG 228 (742)
.+..+|..||+||+.+.. ...|.|.+..... ++ .-.|.|.|||.||+++++.+.+...+..........|-.|+|
T Consensus 408 ~l~~vl~NLl~NAik~~~--~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLG 485 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTE--SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHHhhcCC--CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchh
Confidence 356789999999999743 2344454432211 11 346899999999999999998863332211111234567888
Q ss_pred ccc---cccccCCeEEEEeeec
Q 004612 229 FKT---STMRLGADVIVFSCCC 247 (742)
Q Consensus 229 fKs---AsmrLG~~V~V~SK~~ 247 (742)
|.. ..-.+|.++.|.|...
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCC
Confidence 753 2345888899988753
No 63
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.86 E-value=0.021 Score=67.70 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=64.5
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccc-cCCcccCccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKS-KAANTIGQYGNGFK 230 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~-r~~~~IGrfGvGfK 230 (742)
.+..+|..||+||+++. ....|.|.+.... ++.-.|.|.|||.||+++++.+.|...++.|. ......+--|+|+.
T Consensus 398 ~l~qvl~NLl~NAik~~--~~g~v~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~ 474 (779)
T PRK11091 398 RLRQILWNLISNAVKFT--QQGGVTVRVRYEE-GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLA 474 (779)
T ss_pred HHHHHHHHHHHHHHHhC--CCCcEEEEEEEcc-CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHH
Confidence 46688999999999984 3445666665542 34568999999999999999999875444431 11222445678874
Q ss_pred cc---ccccCCeEEEEeeec
Q 004612 231 TS---TMRLGADVIVFSCCC 247 (742)
Q Consensus 231 sA---smrLG~~V~V~SK~~ 247 (742)
.+ .-.+|..+.|.|...
T Consensus 475 i~~~iv~~~gG~i~v~s~~g 494 (779)
T PRK11091 475 VSKRLAQAMGGDITVTSEEG 494 (779)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 32 345789999988753
No 64
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.81 E-value=0.021 Score=68.57 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=63.1
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
..+..+|..||+||+.+. ....|.|.+..+ ++.-.|.|.|||.||+++++.+.+...+..+ ...|-.|+|+.
T Consensus 560 ~~l~qil~NLl~NAik~~--~~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~----~~~~g~GLGL~ 631 (914)
T PRK11466 560 RRIRQVITNLLSNALRFT--DEGSIVLRSRTD--GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS----GKRGGTGLGLT 631 (914)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHhchhhcCC----CCCCCCcccHH
Confidence 446678999999999984 344566666443 3456799999999999999999887444322 12255788875
Q ss_pred cc---ccccCCeEEEEeeec
Q 004612 231 TS---TMRLGADVIVFSCCC 247 (742)
Q Consensus 231 sA---smrLG~~V~V~SK~~ 247 (742)
.+ .-.+|.++.|.|...
T Consensus 632 i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 632 ISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 32 345788999988753
No 65
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.77 E-value=0.014 Score=67.81 Aligned_cols=85 Identities=25% Similarity=0.407 Sum_probs=57.2
Q ss_pred CHHHHHHHhhccchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~ag-At~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
.+-..+-.||.||+||.... ...|+|.... .++.-.|.|.|||+|+.++-+.+.|...++.|. +| -|+|+-
T Consensus 497 RLeQVLvNLl~NALDA~~~~~~~~i~i~~~~--~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~-----~~-~GLGLG 568 (603)
T COG4191 497 RLEQVLVNLLQNALDAMAGQEDRRLSIRAQR--EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP-----VG-KGLGLG 568 (603)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe--cCCeEEEEEccCCCCCCHHHHHhhcCCccccCc-----cc-CCcchh
Confidence 34567899999999997521 2345555544 357789999999999999999999985555552 11 145443
Q ss_pred cc-----ccccCCeEEEEe
Q 004612 231 TS-----TMRLGADVIVFS 244 (742)
Q Consensus 231 sA-----smrLG~~V~V~S 244 (742)
.+ .-.+|..+.|.+
T Consensus 569 LaIS~~i~~d~GGsL~v~n 587 (603)
T COG4191 569 LAISQNIARDLGGSLEVAN 587 (603)
T ss_pred HHHHHHHHHHhCCeEEeec
Confidence 22 223567777764
No 66
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.63 E-value=0.036 Score=68.04 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=62.7
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
..+..+|..||+||+.+.. ...|.|.+... ++.-.|.|.|+|.||+++++.+.+...+..+.......+-.|+||.
T Consensus 561 ~~L~qvl~NLl~NAik~t~--~G~I~I~v~~~--~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~ 636 (924)
T PRK10841 561 MRLQQVISNLLSNAIKFTD--TGCIVLHVRVD--GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLA 636 (924)
T ss_pred HHHHHHHHHHHHHHHhhCC--CCcEEEEEEEe--CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHH
Confidence 3466889999999999843 34466665443 3556799999999999999999886433322111122344688875
Q ss_pred cc---ccccCCeEEEEeee
Q 004612 231 TS---TMRLGADVIVFSCC 246 (742)
Q Consensus 231 sA---smrLG~~V~V~SK~ 246 (742)
.+ .-.+|.++.|.|..
T Consensus 637 I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 637 ICEKLINMMDGDISVDSEP 655 (924)
T ss_pred HHHHHHHHCCCEEEEEEcC
Confidence 43 34578899998874
No 67
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=95.62 E-value=0.025 Score=68.09 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=62.9
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCc-eeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGS-RMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~-~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (742)
..+..+|..||+||+.+. ....|.|.+.... +. -.|.|.|+|.||+++++.+.|...++.+ .....|-.|+||
T Consensus 578 ~~l~~il~nLi~NAik~~--~~g~i~i~~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~--~~~~~~g~GLGL 651 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFT--DRGSVVLRVSLND--DSSLLFEVEDTGCGIAEEEQATLFDAFTQAD--GRRRSGGTGLGL 651 (968)
T ss_pred HHHHHHHHHHHHHHHhhC--CCCeEEEEEEEcC--CCeEEEEEEeCCCCCCHHHHHHHHhhhhccC--CCCCCCCccHHH
Confidence 456778999999999983 2345677665543 34 7899999999999999999886333322 122235568887
Q ss_pred ccc---ccccCCeEEEEeee
Q 004612 230 KTS---TMRLGADVIVFSCC 246 (742)
Q Consensus 230 KsA---smrLG~~V~V~SK~ 246 (742)
..+ .-.+|..+.|.|..
T Consensus 652 ~i~~~l~~~~gG~i~~~s~~ 671 (968)
T TIGR02956 652 AISQRLVEAMDGELGVESEL 671 (968)
T ss_pred HHHHHHHHHcCCEEEEEecC
Confidence 532 34578888888764
No 68
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.59 E-value=0.042 Score=67.38 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=62.5
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccC-CCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRK-DGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~-~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (742)
..+..+|..||.||+.+.. ...|.|.+..... ++.-.|.|.|+|.||+++++.+.+...++.+... ..-+--|+||
T Consensus 564 ~~L~QVL~NLL~NAik~t~--~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~-~~~~GtGLGL 640 (894)
T PRK10618 564 DALRKILLLLLNYAITTTA--YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGD-RYGKASGLTF 640 (894)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCC-CCCCCcChhH
Confidence 3466789999999999843 3356666644321 2346799999999999999999886444433211 1112357776
Q ss_pred ccc---ccccCCeEEEEeeec
Q 004612 230 KTS---TMRLGADVIVFSCCC 247 (742)
Q Consensus 230 KsA---smrLG~~V~V~SK~~ 247 (742)
..+ .-.+|..+.|.|...
T Consensus 641 aI~k~Lve~~GG~I~v~S~~g 661 (894)
T PRK10618 641 FLCNQLCRKLGGHLTIKSREG 661 (894)
T ss_pred HHHHHHHHHcCCEEEEEECCC
Confidence 432 345899999998753
No 69
>PLN03128 DNA topoisomerase 2; Provisional
Probab=95.54 E-value=0.016 Score=72.35 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=59.2
Q ss_pred HHHHHhhccchhhhh--cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh--------hhh-ccccccccC---Cc
Q 004612 155 GAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA---AN 220 (742)
Q Consensus 155 ~AIAELVDNSiDA~~--agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~--------~l~-~G~SsK~r~---~~ 220 (742)
--+.|+||||+|... ..++.|.|.|.. ....|+|.|||.||+-+--.+ +|. +-.+.|..+ ..
T Consensus 55 ki~dEIldNAvDe~~~~g~~~~I~V~i~~----~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykv 130 (1135)
T PLN03128 55 KIFDEILVNAADNKQRDPSMDSLKVDIDV----EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKT 130 (1135)
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEEEEc----CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCcccee
Confidence 458999999999752 236777777753 235899999999998752211 122 333444322 24
Q ss_pred ccCcccccccccccccCCeEEEEee
Q 004612 221 TIGQYGNGFKTSTMRLGADVIVFSC 245 (742)
Q Consensus 221 ~IGrfGvGfKsAsmrLG~~V~V~SK 245 (742)
.-|+.|+|.+.+- .+...+.|.++
T Consensus 131 SGGlhGvGasvvN-aLS~~f~Vev~ 154 (1135)
T PLN03128 131 TGGRNGYGAKLAN-IFSTEFTVETA 154 (1135)
T ss_pred eccccCCCCeEEE-eecCeEEEEEE
Confidence 6899999987554 58899999998
No 70
>PRK10490 sensor protein KdpD; Provisional
Probab=95.52 E-value=0.028 Score=68.77 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
..+..+|..||+||+.+.. ....|.|.+... ++.-.|.|.|||.||+++++.+.|...++.+.. ...+-.|+||.
T Consensus 777 ~~L~qVL~NLL~NAik~s~-~g~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~--~~~~G~GLGL~ 851 (895)
T PRK10490 777 PLFERVLINLLENAVKYAG-AQAEIGIDAHVE--GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE--SAIPGVGLGLA 851 (895)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCeEEEEEEEe--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--CCCCCccHHHH
Confidence 3467889999999999842 234566665433 355789999999999999999998754443311 12234678875
Q ss_pred cc---ccccCCeEEEEeeec
Q 004612 231 TS---TMRLGADVIVFSCCC 247 (742)
Q Consensus 231 sA---smrLG~~V~V~SK~~ 247 (742)
.+ .-.+|.++.+.+...
T Consensus 852 Ivk~ive~hGG~I~v~s~~~ 871 (895)
T PRK10490 852 ICRAIVEVHGGTIWAENRPE 871 (895)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 32 335788898888653
No 71
>PRK10547 chemotaxis protein CheA; Provisional
Probab=95.18 E-value=0.043 Score=65.40 Aligned_cols=90 Identities=19% Similarity=0.337 Sum_probs=59.4
Q ss_pred HHHHHHhhccchhhhhc-----------CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh----------------
Q 004612 154 LGAFAELLDNSLDEVCN-----------GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH---------------- 206 (742)
Q Consensus 154 f~AIAELVDNSiDA~~a-----------gAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~---------------- 206 (742)
..+|..||.||+|+-.. ....|.|..... ++.-.|.|.|||.||+++.+..
T Consensus 387 ~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~--~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~ 464 (670)
T PRK10547 387 IDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQ--GGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDE 464 (670)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHH
Confidence 34467899999997311 112455655432 4556799999999999987752
Q ss_pred -----hhhccccccccCCcccCccccccc---ccccccCCeEEEEeee
Q 004612 207 -----CMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 246 (742)
Q Consensus 207 -----~l~~G~SsK~r~~~~IGrfGvGfK---sAsmrLG~~V~V~SK~ 246 (742)
.|..|++.+.. ...+.-.|+||. ...-.+|..+.|.|..
T Consensus 465 e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~ 511 (670)
T PRK10547 465 EVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ 511 (670)
T ss_pred HHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecC
Confidence 34456766532 233445699984 3445689999999975
No 72
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=95.07 E-value=0.044 Score=53.64 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=55.9
Q ss_pred HHHHHHHhhccchhhhhcC--CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~ag--At~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
+--|+.|++.||+...-.+ ...|.|.+... ++.-.|.|.|+|.|++++.+...+....... .......-|.||.
T Consensus 43 l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~--~~~~~~~~G~GL~ 118 (159)
T TIGR01924 43 LKIAVSEACTNAVKHAYKEGENGEIGISFHIY--EDRLEIIVSDQGDSFDMDTFKQSLGPYDGSE--PIDDLREGGLGLF 118 (159)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe--CCEEEEEEEEcccccCchhhccccCCCCCCC--CcccCCCCccCHH
Confidence 4568999999999873211 23566666543 4567899999999999988775443211111 1111223488887
Q ss_pred ccccccCCeEEEEe
Q 004612 231 TSTMRLGADVIVFS 244 (742)
Q Consensus 231 sAsmrLG~~V~V~S 244 (742)
..- ++.+.+.+..
T Consensus 119 Li~-~L~D~v~~~~ 131 (159)
T TIGR01924 119 LIE-TLMDEVEVYE 131 (159)
T ss_pred HHH-HhccEEEEEe
Confidence 654 5788888765
No 73
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.06 E-value=0.034 Score=54.31 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=54.4
Q ss_pred HHHHHHHhhccchhhhhcCC--ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agA--t~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
+--|+.|++-||+.....+. ..|.|.+... ++.-.|.|.|+|.||+++.+...+...+..+.. .....-|+|+.
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~--~~~~~~G~GL~ 118 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY--EDRLEIVVADNGVSFDYETLKSKLGPYDISKPI--EDLREGGLGLF 118 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE--CCEEEEEEEECCcCCChHHhccccCCCCCCCcc--cccCCCceeHH
Confidence 44689999999998732221 2455655443 467899999999999998887766433322111 11112377776
Q ss_pred ccccccCCeEEEEe
Q 004612 231 TSTMRLGADVIVFS 244 (742)
Q Consensus 231 sAsmrLG~~V~V~S 244 (742)
..- .+.+++.+.+
T Consensus 119 li~-~l~d~v~~~~ 131 (161)
T PRK04069 119 LIE-TLMDDVTVYK 131 (161)
T ss_pred HHH-HHHHhEEEEc
Confidence 544 3667777664
No 74
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.02 E-value=0.074 Score=49.53 Aligned_cols=85 Identities=22% Similarity=0.228 Sum_probs=52.1
Q ss_pred HHHHHHHhhccchhhh-h-cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 153 ALGAFAELLDNSLDEV-C-NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~-~-agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
+-.|+.||+.||+.+. . .....|.|.+... ++.-.|.|.|+|.||+. +...+...++.+. ..+..|+|+.
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~--~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~ 111 (137)
T TIGR01925 40 IKTAVSEAVTNAIIHGYEENCEGVVYISATIE--DHEVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFT 111 (137)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe--CCEEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHH
Confidence 4468999999999741 1 1134566666543 35678999999999973 4445543333321 2234678876
Q ss_pred ccccccCCeEEEEeee
Q 004612 231 TSTMRLGADVIVFSCC 246 (742)
Q Consensus 231 sAsmrLG~~V~V~SK~ 246 (742)
... +++.++.+.+..
T Consensus 112 lv~-~~~~~l~~~~~~ 126 (137)
T TIGR01925 112 VME-NFMDDVSVDSEK 126 (137)
T ss_pred HHH-HhCCcEEEEECC
Confidence 433 456677776653
No 75
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=95.01 E-value=0.072 Score=66.17 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=59.8
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEE--c-cCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLI--N-RKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN 227 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~--~-~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGv 227 (742)
..+..+|..||+||+++...+ .+.|.+.. . .....-.|.|.|||.||+++++.+.+...++.+. ...-+-.|+
T Consensus 827 ~~l~qvl~NLl~NAik~~~~g--~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~--~~~~~G~GL 902 (1197)
T PRK09959 827 QAFKQVLSNLLSNALKFTTEG--AVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA--GRQQTGSGL 902 (1197)
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc--CCCCCCcCc
Confidence 346789999999999985322 33444321 1 1112245889999999999999999874443321 112234688
Q ss_pred ccccc---ccccCCeEEEEeee
Q 004612 228 GFKTS---TMRLGADVIVFSCC 246 (742)
Q Consensus 228 GfKsA---smrLG~~V~V~SK~ 246 (742)
||..+ .-.+|.++.|.+..
T Consensus 903 GL~i~~~iv~~~gG~i~v~s~~ 924 (1197)
T PRK09959 903 GLMICKELIKNMQGDLSLESHP 924 (1197)
T ss_pred hHHHHHHHHHHcCCEEEEEeCC
Confidence 87543 33578889998875
No 76
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.79 E-value=0.042 Score=59.70 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=58.5
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccc-cc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN-GF 229 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGv-Gf 229 (742)
.-+|-++.|.|-|++-. ++|+.+.|.+.... +.-.|.|.|||.|-+.+... |-||+ ||
T Consensus 278 ~~l~rivQEaltN~~rH--a~A~~v~V~l~~~~--~~l~l~V~DnG~Gf~~~~~~-----------------~~~GL~~m 336 (365)
T COG4585 278 DALFRIVQEALTNAIRH--AQATEVRVTLERTD--DELRLEVIDNGVGFDPDKEG-----------------GGFGLLGM 336 (365)
T ss_pred HHHHHHHHHHHHHHHhc--cCCceEEEEEEEcC--CEEEEEEEECCcCCCccccC-----------------CCcchhhH
Confidence 45678899999999997 57999999887654 56899999999997664421 44555 55
Q ss_pred cccccccCCeEEEEeee
Q 004612 230 KTSTMRLGADVIVFSCC 246 (742)
Q Consensus 230 KsAsmrLG~~V~V~SK~ 246 (742)
+-=...+|..++|.|..
T Consensus 337 reRv~~lgG~l~i~S~~ 353 (365)
T COG4585 337 RERVEALGGTLTIDSAP 353 (365)
T ss_pred HHHHHHcCCEEEEEecC
Confidence 55556799999999987
No 77
>PRK13557 histidine kinase; Provisional
Probab=94.68 E-value=0.09 Score=58.16 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=60.1
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEc-------------cCCCceeEEEEEcCCCCCHHHHHhhhhccccccccC
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLIN-------------RKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA 218 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~-------------~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~ 218 (742)
.+..++..|+.||+++... ...+.|..... ..++.-.|.|.|||.||+++.+...|...++.+.
T Consensus 277 ~l~~vl~nll~NA~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~-- 353 (540)
T PRK13557 277 QAEVALLNVLINARDAMPE-GGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE-- 353 (540)
T ss_pred HHHHHHHHHHHHHHHhccc-CCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC--
Confidence 3567899999999998532 23344443321 0123347999999999999999998875555432
Q ss_pred CcccCcccccccc---cccccCCeEEEEeee
Q 004612 219 ANTIGQYGNGFKT---STMRLGADVIVFSCC 246 (742)
Q Consensus 219 ~~~IGrfGvGfKs---AsmrLG~~V~V~SK~ 246 (742)
..+-.|+||.. ..-.+|..+.|.+..
T Consensus 354 --~~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 354 --EGKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred --CCCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 22345777642 344588999998874
No 78
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=94.20 E-value=0.074 Score=60.79 Aligned_cols=70 Identities=26% Similarity=0.368 Sum_probs=49.9
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
.+..++.|+++||+.+. .+..|.|.+..+ ++.-.|.|.|||.||++++. ..|+|++.
T Consensus 410 ~L~ril~nlL~NAiKha--~~~~I~I~l~~~--~~~i~l~V~DnG~Gi~~~~~-------------------~~GLGL~i 466 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHA--DASAVTLQGWQQ--DERLMLVIEDDGSGLPPGSG-------------------QQGFGLRG 466 (495)
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEEEEEc--CCEEEEEEEECCCCCCcCCC-------------------CCCCcHHH
Confidence 35668899999999973 456677776543 35578999999999986531 13777643
Q ss_pred ---cccccCCeEEEEe
Q 004612 232 ---STMRLGADVIVFS 244 (742)
Q Consensus 232 ---AsmrLG~~V~V~S 244 (742)
-.-.+|.++.+.|
T Consensus 467 vr~iv~~~GG~i~v~S 482 (495)
T PRK11644 467 MRERVTALGGTLTISC 482 (495)
T ss_pred HHHHHHHcCCEEEEEc
Confidence 2345888888877
No 79
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.88 E-value=0.14 Score=46.93 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=53.8
Q ss_pred CHHHHHHHhhccchhhhhcCC--ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agA--t~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (742)
.+.-|+.|++-||+.....+. ..|.|.+... .+.-.|.|.|+|.|+++..+........ .....-|.|+
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~--~~~l~i~v~D~G~~~d~~~~~~~~~~~~-------~~~~~~G~Gl 101 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDPDGPVDVRLEVD--PDRLRISVRDNGPGFDPEQLPQPDPWEP-------DSLREGGRGL 101 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc--CCEEEEEEEECCCCCChhhccCcccccC-------CCCCCCCcCH
Confidence 355799999999999843222 3455555444 3668899999999999987765432111 2233447776
Q ss_pred cccccccCCeEEE
Q 004612 230 KTSTMRLGADVIV 242 (742)
Q Consensus 230 KsAsmrLG~~V~V 242 (742)
.... .+++++.+
T Consensus 102 ~li~-~l~D~~~~ 113 (125)
T PF13581_consen 102 FLIR-SLMDEVDY 113 (125)
T ss_pred HHHH-HHHcEEEE
Confidence 6444 58889988
No 80
>PRK03660 anti-sigma F factor; Provisional
Probab=93.71 E-value=0.25 Score=46.44 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=50.7
Q ss_pred HHHHHHHhhccchhhhhcC-C-ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNG-A-TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~ag-A-t~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
+..|+.|++.||+...... . ..|.|.+... ++.-.|.|.|+|.||+. +...+...++.+. .-+.-|+|+.
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~--~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~ 111 (146)
T PRK03660 40 IKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE--EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFT 111 (146)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHH
Confidence 4568999999999642111 1 3466665443 35567999999999986 3344433332221 1123488886
Q ss_pred ccccccCCeEEEEee
Q 004612 231 TSTMRLGADVIVFSC 245 (742)
Q Consensus 231 sAsmrLG~~V~V~SK 245 (742)
.+. +++..+.+.+.
T Consensus 112 i~~-~~~~~i~~~~~ 125 (146)
T PRK03660 112 VME-SFMDEVEVESE 125 (146)
T ss_pred HHH-HhCCeEEEEec
Confidence 543 46777776654
No 81
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=93.64 E-value=0.1 Score=59.94 Aligned_cols=75 Identities=21% Similarity=0.196 Sum_probs=53.3
Q ss_pred cCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
.+++..|.|+|.||+.+ +.++.|.|.+... ++.-.|.|.|||.||+++.- + .-|+|+.
T Consensus 468 ~~l~~il~ell~NA~kh--a~a~~i~V~~~~~--~~~~~l~V~D~G~Gi~~~~~----------~--------~~glGL~ 525 (569)
T PRK10600 468 IHLLQIAREALSNALKH--AQASEVVVTVAQN--QNQVKLSVQDNGCGVPENAE----------R--------SNHYGLI 525 (569)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCeEEEEEEEc--CCEEEEEEEECCCCCCcccc----------C--------CCCccHH
Confidence 35778899999999987 3566777777543 35678999999999987531 0 1255553
Q ss_pred ---ccccccCCeEEEEeeec
Q 004612 231 ---TSTMRLGADVIVFSCCC 247 (742)
Q Consensus 231 ---sAsmrLG~~V~V~SK~~ 247 (742)
.-.-++|.++.|.+...
T Consensus 526 i~~~~~~~lgG~l~i~s~~~ 545 (569)
T PRK10600 526 IMRDRAQSLRGDCRVRRRES 545 (569)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 23346999999988754
No 82
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=92.85 E-value=0.2 Score=58.15 Aligned_cols=74 Identities=27% Similarity=0.395 Sum_probs=57.5
Q ss_pred HHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc-ccc
Q 004612 155 GAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK-TST 233 (742)
Q Consensus 155 ~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK-sAs 233 (742)
.-++|-+.|++.. +.|+.|+|.+..+. |...+.|+|||+|++.. ....|.||+-.- --.
T Consensus 484 qIvREAlsNa~KH--a~As~i~V~~~~~~--g~~~~~VeDnG~Gi~~~----------------~e~~gHyGL~IM~ERA 543 (574)
T COG3850 484 QIVREALSNAIKH--AQASEIKVTVSQND--GQVTLTVEDNGVGIDEA----------------AEPSGHYGLNIMRERA 543 (574)
T ss_pred HHHHHHHHHHHHh--cccCeEEEEEEecC--CeEEEEEeeCCcCCCCc----------------cCCCCCcchHHHHHHH
Confidence 3589999999987 57999888887654 78999999999998864 235678888641 123
Q ss_pred cccCCeEEEEeeecC
Q 004612 234 MRLGADVIVFSCCCG 248 (742)
Q Consensus 234 mrLG~~V~V~SK~~g 248 (742)
-+++..+.|-.|..+
T Consensus 544 ~~L~~~L~i~~~~~g 558 (574)
T COG3850 544 QRLGGQLRIRRREGG 558 (574)
T ss_pred HHhcCeEEEeecCCC
Confidence 369999999988755
No 83
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.53 E-value=0.33 Score=58.82 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=58.2
Q ss_pred HHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccCCcccCcccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~-~G~SsK~r~~~~IGrfGvGfKs 231 (742)
+..+|..|||||+-..- ....|.|..... ...-.+.|.|+|.|++.+++.+.|. |-+-.|..+ ..--|+||..
T Consensus 776 ieQVLiNLleNA~Kyap-~~s~I~I~~~~~--~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~---~~G~GLGLsI 849 (890)
T COG2205 776 IEQVLINLLENALKYAP-PGSEIRINAGVE--RENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA---TRGVGLGLAI 849 (890)
T ss_pred HHHHHHHHHHHHHhhCC-CCCeEEEEEEEe--cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC---CCCccccHHH
Confidence 46789999999998722 234566666544 3667899999999999999999986 544444222 2223455432
Q ss_pred c---ccccCCeEEEEeee
Q 004612 232 S---TMRLGADVIVFSCC 246 (742)
Q Consensus 232 A---smrLG~~V~V~SK~ 246 (742)
+ .-..|..+.+..+.
T Consensus 850 c~~iv~ahgG~I~a~~~~ 867 (890)
T COG2205 850 CRGIVEAHGGTISAENNP 867 (890)
T ss_pred HHHHHHHcCCeEEEEEcC
Confidence 1 22356777777743
No 84
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=91.31 E-value=0.2 Score=56.69 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=38.4
Q ss_pred HHHHHhhccchhhhh-cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhh
Q 004612 155 GAFAELLDNSLDEVC-NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCM 208 (742)
Q Consensus 155 ~AIAELVDNSiDA~~-agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l 208 (742)
-.|-=|||||+-+.. .......|.|.....++.-.+.|.|||.||+++.+....
T Consensus 353 l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 353 LVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred HHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHH
Confidence 357889999999842 123334555554444567789999999999998887654
No 85
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=90.91 E-value=0.54 Score=52.69 Aligned_cols=89 Identities=20% Similarity=0.324 Sum_probs=61.2
Q ss_pred HHHHHhhccchhhhhcC-------CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc---C---Ccc
Q 004612 155 GAFAELLDNSLDEVCNG-------ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK---A---ANT 221 (742)
Q Consensus 155 ~AIAELVDNSiDA~~ag-------At~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r---~---~~~ 221 (742)
-.+-||..||+.|.... -.-|+|.+..+ +....|.|.|-|+|++++++...|.+++|.-.. + ...
T Consensus 263 ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~p 340 (414)
T KOG0787|consen 263 YMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAP 340 (414)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC--CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCc
Confidence 46899999999987521 22467777654 356789999999999999999999998875421 1 123
Q ss_pred cCccccccccc---ccccCCeEEEEee
Q 004612 222 IGQYGNGFKTS---TMRLGADVIVFSC 245 (742)
Q Consensus 222 IGrfGvGfKsA---smrLG~~V~V~SK 245 (742)
+--||-|+-.+ .-..|.++.+.|-
T Consensus 341 laGfG~GLPisrlYa~yf~Gdl~L~Sl 367 (414)
T KOG0787|consen 341 LAGFGFGLPISRLYARYFGGDLKLQSL 367 (414)
T ss_pred ccccccCCcHHHHHHHHhCCCeeEEee
Confidence 44566666432 2224566666666
No 86
>PRK13560 hypothetical protein; Provisional
Probab=90.03 E-value=0.5 Score=55.20 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=47.7
Q ss_pred HHHHHHhhccchhhhhcC--CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004612 154 LGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 154 f~AIAELVDNSiDA~~ag--At~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (742)
...|.+||.||+.+...+ +..|.|.+.... ++.-.|.|.|||+||+++... . .| -|+||..
T Consensus 713 ~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~-~~~v~i~V~D~G~GI~~~~~~-----~----------~~-~gLGLai 775 (807)
T PRK13560 713 GLIISELLSNALKHAFPDGAAGNIKVEIREQG-DGMVNLCVADDGIGLPAGFDF-----R----------AA-ETLGLQL 775 (807)
T ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEEEEcC-CCEEEEEEEeCCCcCCccccc-----c----------cc-CCccHHH
Confidence 346789999999974222 235566554321 345689999999999986310 0 00 1577643
Q ss_pred c---ccccCCeEEEEee
Q 004612 232 S---TMRLGADVIVFSC 245 (742)
Q Consensus 232 A---smrLG~~V~V~SK 245 (742)
+ .-..|..+.|.|.
T Consensus 776 ~~~iv~~~gG~I~v~S~ 792 (807)
T PRK13560 776 VCALVKQLDGEIALDSR 792 (807)
T ss_pred HHHHHHHcCCEEEEEcC
Confidence 2 3458899999885
No 87
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=89.76 E-value=0.66 Score=53.37 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=50.1
Q ss_pred CHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccc
Q 004612 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKS 216 (742)
Q Consensus 152 w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~ 216 (742)
.+-..+-.|+-||+||+.-.|..|+|+..-+ .++..+|.|.|||-|-+.+-+.+.+...+++|.
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~-~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~ 627 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALGT-EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE 627 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeecC-cccceEEEEecCCCCCchhHHHHhcCCcccccc
Confidence 3556788999999999876666666655432 256789999999999999999999987777774
No 88
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=89.56 E-value=0.81 Score=55.28 Aligned_cols=94 Identities=21% Similarity=0.366 Sum_probs=61.9
Q ss_pred HHHHHHHhhccchhhhh--------cCC-ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh-hhhc------------
Q 004612 153 ALGAFAELLDNSLDEVC--------NGA-TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-CMSL------------ 210 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~--------agA-t~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~-~l~~------------ 210 (742)
+...|-.||-||+|.-. +|- ..=.|.+..--.++.-.|.|.|||.||+++.|.. ++.-
T Consensus 433 l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lS 512 (716)
T COG0643 433 LGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLS 512 (716)
T ss_pred hcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCC
Confidence 33445789999999621 110 1113444333346777899999999999998863 4432
Q ss_pred -----------cccccccCCcccCcccccc---cccccccCCeEEEEeeec
Q 004612 211 -----------GYSAKSKAANTIGQYGNGF---KTSTMRLGADVIVFSCCC 247 (742)
Q Consensus 211 -----------G~SsK~r~~~~IGrfGvGf---KsAsmrLG~~V~V~SK~~ 247 (742)
|+|.+. ..+.+.--|+|| |+..-+||..|.|.|+..
T Consensus 513 d~Ei~~LIF~PGFSTa~-~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G 562 (716)
T COG0643 513 DEEILNLIFAPGFSTAE-QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPG 562 (716)
T ss_pred HHHHHHHHhcCCCCcch-hhhcccCCccCHHHHHHHHHHcCCEEEEEecCC
Confidence 444332 224455559997 778889999999999964
No 89
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=88.86 E-value=0.6 Score=55.16 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=44.0
Q ss_pred HHHHHHHhhccchhhhhcC-Ccee---EEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh
Q 004612 153 ALGAFAELLDNSLDEVCNG-ATYS---NIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS 209 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~ag-At~V---~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~ 209 (742)
+-.|+..||.||.+|+.+. +... .|.+..+..++.-++.|.|||.|.+.+.+.+++.
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhcc
Confidence 4578999999999997522 1111 3555556667888999999999999999999986
No 90
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=87.52 E-value=1.6 Score=42.84 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=53.5
Q ss_pred cCHHHHHHHhhccchhhhhcCC---ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccc
Q 004612 151 KWALGAFAELLDNSLDEVCNGA---TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN 227 (742)
Q Consensus 151 ~w~f~AIAELVDNSiDA~~agA---t~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGv 227 (742)
..+-.|+.|++.|++.+.-..+ ..|.|.+... .+.-.++|.|.|.| .+++...+..++... ..+-.-|+
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~--~~~~~i~i~D~G~~--~~~~~~~~~~~~~~~----~~~~~~G~ 110 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLD--DGKLEIRIWDQGPG--IEDLEESLGPGDTTA----EGLQEGGL 110 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc--CCeEEEEEEeCCCC--CCCHHHhcCCCCCCC----cccccccc
Confidence 4567899999999999732211 3455655554 46789999999944 556666666553322 12222255
Q ss_pred cccccccccCCeEEEEeee
Q 004612 228 GFKTSTMRLGADVIVFSCC 246 (742)
Q Consensus 228 GfKsAsmrLG~~V~V~SK~ 246 (742)
||.. ..++-+++.+....
T Consensus 111 Gl~l-~~~~~D~~~~~~~~ 128 (146)
T COG2172 111 GLFL-AKRLMDEFSYERSE 128 (146)
T ss_pred cHHH-HhhhheeEEEEecc
Confidence 5532 23567778777443
No 91
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=86.62 E-value=1.1 Score=46.49 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=33.9
Q ss_pred HHHHHhhccchhhhhc--CCceeEEEEEEccCCCceeEEEEEcCCCCCHH
Q 004612 155 GAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (742)
Q Consensus 155 ~AIAELVDNSiDA~~a--gAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~e 202 (742)
-+|-||+-||+....- ....|.|.+.....++...+.|.|||.|++.+
T Consensus 125 liv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 4589999999997322 24467777766542224789999999998753
No 92
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=84.71 E-value=1.2 Score=50.42 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=48.3
Q ss_pred HHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc--
Q 004612 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK-- 230 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK-- 230 (742)
+...+.+|+.||+.+. .+..+.|.+.... ++.-.|.|.|||+||++++.. .-|+|+.
T Consensus 472 l~qv~~nll~NA~k~~--~~~~i~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~------------------~~glGL~i~ 530 (565)
T PRK10935 472 LLQIIREATLNAIKHA--NASEIAVSCVTNP-DGEHTVSIRDDGIGIGELKEP------------------EGHYGLNIM 530 (565)
T ss_pred HHHHHHHHHHHHHhcC--CCCeEEEEEEEcC-CCEEEEEEEECCcCcCCCCCC------------------CCCcCHHHH
Confidence 4567899999999862 4556666665431 345679999999999864210 1145542
Q ss_pred -ccccccCCeEEEEeeec
Q 004612 231 -TSTMRLGADVIVFSCCC 247 (742)
Q Consensus 231 -sAsmrLG~~V~V~SK~~ 247 (742)
.-.-.+|..+.|.|...
T Consensus 531 ~~iv~~~~G~i~v~s~~~ 548 (565)
T PRK10935 531 QERAERLGGTLTISQPPG 548 (565)
T ss_pred HHHHHHcCCEEEEEECCC
Confidence 22335777888877653
No 93
>PRK13559 hypothetical protein; Provisional
Probab=81.67 E-value=2.1 Score=45.65 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=46.9
Q ss_pred HHHHHHHhhccchhhhh--cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 153 ALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~--agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
+..++.|||.||+.+-. .....|.|.+.....++...|.+.|||+||.++.- .-|+|+.
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~~-------------------~~g~Gl~ 328 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKLA-------------------KRGFGTV 328 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCCC-------------------CCCcHHH
Confidence 45688999999998721 12346666663233345678999999999765411 1155544
Q ss_pred cc---ccc-cCCeEEEEee
Q 004612 231 TS---TMR-LGADVIVFSC 245 (742)
Q Consensus 231 sA---smr-LG~~V~V~SK 245 (742)
.. .-. +|..+.+.+.
T Consensus 329 i~~~~v~~~~gG~i~~~~~ 347 (361)
T PRK13559 329 IIGAMVESQLNGQLEKTWS 347 (361)
T ss_pred HHHHHHHHHcCCeEEEEEc
Confidence 22 223 8888888776
No 94
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=80.04 E-value=2 Score=48.27 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=50.0
Q ss_pred HHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccCCcccCcccccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFKT 231 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~-~G~SsK~r~~~~IGrfGvGfKs 231 (742)
+...|-.+|.||+-.-- +...|.|.+.. .+..-.|.|.|.|.|++.+++.+.|. |-+-+|.+ ....|-=|+|+.-
T Consensus 343 ~tQVldNii~NA~KYsP-~Gg~Itv~~~~--~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkAR-sR~~gGTGLGLaI 418 (459)
T COG5002 343 MTQVLDNIISNALKYSP-DGGRITVSVKQ--RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKAR-SRKMGGTGLGLAI 418 (459)
T ss_pred HHHHHHHHHHHHhhcCC-CCCeEEEEEee--eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhh-hhcCCCCchhHHH
Confidence 45677788888887622 23345555433 34557899999999999999999985 54444432 2356666888753
No 95
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=77.82 E-value=3 Score=46.99 Aligned_cols=63 Identities=25% Similarity=0.284 Sum_probs=47.2
Q ss_pred eeeecchhhhcccccccCHHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCH
Q 004612 135 HVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNP 201 (742)
Q Consensus 135 ~~~vhp~fLhSnsTsh~w~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~ 201 (742)
+...|++=.+-+-|.-..++--.-|++.|-... +.|+.|+|.+... +..-++.|.|||.|+++
T Consensus 393 q~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KH--A~AS~V~i~l~~~--~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 393 QLDWRINETALDETQRVTLYRLCQELLNNICKH--ADASAVTIQLWQQ--DERLMLEIEDDGSGLPP 455 (497)
T ss_pred EeccccCcccCCcceeEeHHHHHHHHHHHHHhc--cccceEEEEEeeC--CcEEEEEEecCCcCCCC
Confidence 334455555556666677888899999999986 5788888888653 34578999999999765
No 96
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=75.39 E-value=4.5 Score=48.36 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=54.8
Q ss_pred HHHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhc---cccccccCCcccCcccccc
Q 004612 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSL---GYSAKSKAANTIGQYGNGF 229 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~---G~SsK~r~~~~IGrfGvGf 229 (742)
+-.....||.||+-.-......|.|. ..+.+...++.|.|||.|++++-+.+.|.+ +++.. .-.| -|+|+
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~--~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~----~y~g-tG~GL 709 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEIS--AERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRD----EYLG-TGLGL 709 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEe--eeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcCchh----hhcC-CCccH
Confidence 44556889999998744334555554 455567889999999999999999987652 22221 1122 46665
Q ss_pred ccc---ccccCCeEEEEeee
Q 004612 230 KTS---TMRLGADVIVFSCC 246 (742)
Q Consensus 230 KsA---smrLG~~V~V~SK~ 246 (742)
..+ .-+-+..+.|-|+.
T Consensus 710 ~I~kkI~e~H~G~i~vEs~~ 729 (750)
T COG4251 710 AICKKIAERHQGRIWVESTP 729 (750)
T ss_pred HHHHHHHHHhCceEEEeecC
Confidence 321 22344566676663
No 97
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=65.53 E-value=10 Score=42.11 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=44.7
Q ss_pred HHHHHHHhhccchhhhhcCCc---eeEEE------EEEccC--CCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcc
Q 004612 153 ALGAFAELLDNSLDEVCNGAT---YSNID------MLINRK--DGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANT 221 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~agAt---~V~Id------I~~~~~--~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~ 221 (742)
+..|+..||.||..|....+. .|.+. +..... .-.--|.|.|||.|++++-....|..--|.|.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~----- 316 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE----- 316 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC-----
Confidence 568999999999999643221 22111 111100 01235779999999999888888764444442
Q ss_pred cCccccccccc
Q 004612 222 IGQYGNGFKTS 232 (742)
Q Consensus 222 IGrfGvGfKsA 232 (742)
|-=|+|+..+
T Consensus 317 -~GsGLGLala 326 (363)
T COG3852 317 -GGTGLGLALA 326 (363)
T ss_pred -CCccccHHHH
Confidence 1227777544
No 98
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=46.23 E-value=27 Score=40.97 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=30.1
Q ss_pred HHHhhccchhhhh---cCCceeEEEEEEccCCCceeEEEEEcCCCCCHH
Q 004612 157 FAELLDNSLDEVC---NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (742)
Q Consensus 157 IAELVDNSiDA~~---agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~e 202 (742)
|-=||.||+-.-. .+.-.|.|.+... +..-+|.|.|||.|+.++
T Consensus 461 lQPLVENAIKHG~~~~~~~g~V~I~V~~~--d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 461 LQPLVENAIKHGISQLKDTGRVTISVEKE--DADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhHHHHHHHHhcccchhcCCceEEEEEEe--CCeEEEEEecCCCCcCCC
Confidence 4568899987521 1122455655443 456889999999999996
No 99
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=45.48 E-value=32 Score=38.80 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=52.1
Q ss_pred HHHHHHHhhccchhhhh--cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004612 153 ALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~--agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (742)
+.+|+--+++-|+.-+. ++|+.|.|.+. ..++.-.+.|.|||.|.+..++..-+ .|+|+.
T Consensus 356 ~~talyRv~QEaltNIErHa~Atrv~ill~--~~~d~vql~vrDnG~GF~~~~~~~~~----------------~GiGLR 417 (459)
T COG4564 356 VATALYRVVQEALTNIERHAGATRVTILLQ--QMGDMVQLMVRDNGVGFSVKEALQKR----------------HGIGLR 417 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEEEec--cCCcceEEEEecCCCCccchhhccCc----------------cccccc
Confidence 44566666666665443 47887666653 34577889999999998887765322 477764
Q ss_pred c---cccccCCeEEEEeeecC
Q 004612 231 T---STMRLGADVIVFSCCCG 248 (742)
Q Consensus 231 s---AsmrLG~~V~V~SK~~g 248 (742)
- -.-.+|..+.|.|-..|
T Consensus 418 NMrERma~~GG~~~v~s~p~G 438 (459)
T COG4564 418 NMRERMAHFGGELEVESSPQG 438 (459)
T ss_pred cHHHHHHHhCceEEEEecCCC
Confidence 2 12237889999988765
No 100
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=41.53 E-value=45 Score=41.29 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=35.0
Q ss_pred HHHHHHhhccchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHH
Q 004612 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM 204 (742)
Q Consensus 154 f~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g~~~L~I~DNG~GM~~eeL 204 (742)
+.-+-|+++||.| ...++..=.|.+..++ ....|.|.+||.|+.-+..
T Consensus 55 ~ki~dEilvNaad-k~rd~~m~~i~v~i~~--e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 55 YKIFDEILVNAAD-KQRDPKMNTIKVTIDK--EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHhhcccc-cccCCCcceeEEEEcc--CCCEEEEEeCCCcceeeec
Confidence 4567999999999 5555554444444454 4679999999999987554
No 101
>PF14501 HATPase_c_5: GHKL domain
Probab=33.13 E-value=64 Score=28.81 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=27.2
Q ss_pred HHHHHHHhhccchhhhhcC--CceeEEEEEEccCCCceeEEEEEcC
Q 004612 153 ALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNG 196 (742)
Q Consensus 153 ~f~AIAELVDNSiDA~~ag--At~V~IdI~~~~~~g~~~L~I~DNG 196 (742)
+...+.-|+|||++|+... .+.|.|.+... ++...|.|.-..
T Consensus 6 l~~il~nlldNAiea~~~~~~~~~I~i~~~~~--~~~~~i~i~N~~ 49 (100)
T PF14501_consen 6 LCRILGNLLDNAIEACKKYEDKRFISISIREE--NGFLVIIIENSC 49 (100)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--CCEEEEEEEECC
Confidence 4567899999999997532 34566666543 355566665543
No 102
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=20.23 E-value=32 Score=39.78 Aligned_cols=14 Identities=50% Similarity=0.788 Sum_probs=12.2
Q ss_pred cCCCCCCCCCCCCC
Q 004612 78 LPVGFLEPLPAPER 91 (742)
Q Consensus 78 ~~~~~~~~~~~~~~ 91 (742)
-|.+||.|||.-|.
T Consensus 288 y~t~Fl~pLPa~PV 301 (492)
T KOG2183|consen 288 YPTSFLAPLPAWPV 301 (492)
T ss_pred CCccccCcCCCCcH
Confidence 68999999998775
Done!