BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004613
(742 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D13|A Chain A, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|B Chain B, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|C Chain C, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
pdb|2D13|D Chain D, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3
Length = 227
Score = 116 bits (290), Expect = 5e-26, Method: Composition-based stats.
Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 24/222 (10%)
Query: 3 VVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAEC 62
V L SGGKDS YA+ ++ G ++ L +++ ++ +SYMY T ++ A
Sbjct: 7 VAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSENE-----ESYMYHTPNVELTSLQARA 61
Query: 63 MGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQR 122
+G+P+ I G T+ +K EVED+ +L +K V + +GA+AS YQ+
Sbjct: 62 LGIPI----IKGFTKGEK-------EKEVEDLKNVLEGLK-----VDGIVAGALASRYQK 105
Query: 123 LRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAFL 182
R+E+V LGL W++D + E+I G + V V+A GL LG+E+ +
Sbjct: 106 ERIENVARELGLKVYTPAWEKDPYQYMLEIIKLGFKVVFVAVSAYGLNE-SWLGRELNYK 164
Query: 183 D-PYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDE 223
+ L KL E YGI++ GEGGE+ET LD P F A+IV+D+
Sbjct: 165 NLEELKKLSEKYGIHIAGEGGEFETFVLDMPFF-KAKIVIDD 205
>pdb|3RJZ|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase From Pyrococcus Furiosus, The Northeast
Structural Genomics Target Pfr23
pdb|3RK0|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Amp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
pdb|3RK1|A Chain A, 'x-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Atp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
pdb|3RK1|B Chain B, 'x-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Atp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
Length = 237
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 77/228 (33%), Positives = 114/228 (50%), Gaps = 28/228 (12%)
Query: 3 VVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAEC 62
V L SGGKDS YA+ I+ + L + ++ +SY Y T+ + A
Sbjct: 7 VAVLYSGGKDSNYALYWAIKNRFSVKFLVTXVSENE-----ESYXYHTINANLTDLQARA 61
Query: 63 MGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQR 122
+G+PL + G T+ +K EVED+ +L+ +K Q + +GA+AS YQR
Sbjct: 62 LGIPL----VKGFTQGEK-------EKEVEDLKRVLSGLKIQ-----GIVAGALASKYQR 105
Query: 123 LRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGK---EI 179
R+E V LGL W +D +E++ G V V+A GL+ LG+ E
Sbjct: 106 KRIEKVAKELGLEVYTPAWGRDAKEYXRELLNLGFKIXVVGVSAYGLDE-SWLGRILDES 164
Query: 180 AFLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVV 227
A + L L E Y ++V GEGGE+ET LD PLF +IV+D+ + V
Sbjct: 165 ALEE--LITLNEKYKVHVAGEGGEFETFVLDXPLF-KYKIVVDKAKKV 209
>pdb|1ONI|A Chain A, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|B Chain B, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|C Chain C, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|D Chain D, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|E Chain E, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|F Chain F, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|G Chain G, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|H Chain H, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|I Chain I, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
Length = 138
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 491
AP IGPYSQA L + ++GQ+G+DP + L +GG E +QAL+N + K C
Sbjct: 15 APGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDF 74
Query: 492 STSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNL 551
+ VV + +A ++ KQ +F R+ +V + L
Sbjct: 75 TN-----VVKTTVLLADINDFN---TVNEIYKQYFKSNFPARAAYQV----------AAL 116
Query: 552 PKSALVEIKPI 562
PK + +EI+ +
Sbjct: 117 PKGSRIEIEAV 127
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 326 QKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEK 385
Q S G+ ++ + LK + L G D+ +V+ + ++D+N+F NE Y ++
Sbjct: 46 QLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSN- 104
Query: 386 CPCGVPSRSTIELPLLEVG 404
P+R+ ++ L G
Sbjct: 105 ----FPARAAYQVAALPKG 119
>pdb|1NQ3|A Chain A, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|B Chain B, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|C Chain C, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|D Chain D, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|E Chain E, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|F Chain F, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
Length = 136
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 491
AP+ IGPYSQA L + ++GQLG+DP + L GG E +QAL N + K C
Sbjct: 13 APAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALTNIGEILKAAGCDF 72
Query: 492 S 492
+
Sbjct: 73 T 73
>pdb|1X25|A Chain A, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
pdb|1X25|B Chain B, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
Length = 128
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 36/140 (25%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 491
AP +GPYSQA L ++GQ+ +DP T + G V+ Q L N + + K S+
Sbjct: 12 APKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSL 71
Query: 492 STSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVW---------HFEERSMSKVLDPI 542
S A+ FV FLK M ++ +F+++ ++V
Sbjct: 72 SDVAMAFV---------------------FLKDMNMFNDFNSVYAEYFKDKPPARVT--- 107
Query: 543 FLFVLASNLPKSALVEIKPI 562
V S LPK AL+EI I
Sbjct: 108 ---VEVSRLPKDALIEIAVI 124
>pdb|1QAH|A Chain A, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
pdb|1QAH|B Chain B, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
Length = 136
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 491
AP+ IG YSQA L + ++GQ+G+DP + L GG E +QAL+N + K C
Sbjct: 13 APAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDF 72
Query: 492 S 492
+
Sbjct: 73 T 73
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 326 QKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEK 385
Q G+ ++ + LK + L G D+ +V+ + ++D+N+F NE Y +
Sbjct: 44 QLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGN- 102
Query: 386 CPCGVPSRSTIELPLLEVG 404
+P+R+ ++ L G
Sbjct: 103 ----LPARAAYQVAALPKG 117
>pdb|2DYY|A Chain A, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|B Chain B, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|C Chain C, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|D Chain D, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|E Chain E, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|F Chain F, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|G Chain G, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|H Chain H, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|I Chain I, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|J Chain J, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|K Chain K, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|L Chain L, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
Length = 126
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 22/135 (16%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 491
AP IGPYSQA L +AGQ+ +DP T + G + Q L+N +A+ + S+
Sbjct: 10 APKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSL 69
Query: 492 STSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVW--HFEERSMSKVLDPIFLFVLAS 549
+ V+ + Y+ + ++ F K V+ +F E ++V V S
Sbjct: 70 ND-----VIKVTVYL---------KDMNDFAKMNEVYAEYFGESKPARVA------VEVS 109
Query: 550 NLPKSALVEIKPILY 564
LPK L+EI+ I Y
Sbjct: 110 RLPKDVLIEIEAIAY 124
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 334 DDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSR 393
D R VL+ I++ L G+ V+ + +Y+ DMN+FA NE Y ++ K P+R
Sbjct: 49 DQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESK-----PAR 103
Query: 394 STIELPLL 401
+E+ L
Sbjct: 104 VAVEVSRL 111
>pdb|1XRG|A Chain A, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|B Chain B, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|C Chain C, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
Length = 156
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 36/159 (22%)
Query: 406 GKAYIEVLVANDQSKRVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLC 465
G YIEV+ N AP IGPYSQA + + +GQ+ ++P T +
Sbjct: 29 GLXYIEVVKTNK--------------APEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVV 74
Query: 466 NGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKLDAFLKQM 525
+GG + +Q L+N + V + S++ VV + ++ + D+F K
Sbjct: 75 DGGIEEQAKQVLENLKNVLEAAGSSLNK-----VVKTTVFI---------KDXDSFAKVN 120
Query: 526 RVW--HFEERSMSKVLDPIFLFVLASNLPKSALVEIKPI 562
V+ +F E P V S LPK L+EI+ +
Sbjct: 121 EVYAKYFSEPY------PARSCVEVSKLPKGVLIEIEAV 153
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 323 QETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFIT 382
Q + G+ + + VL+ +++ L G V+ ++I D + FA NE Y K+ +
Sbjct: 69 QTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDXDSFAKVNEVYAKYFS 128
Query: 383 HEKCPCGVPSRSTIELPLLEVGL 405
P+RS +E+ L G+
Sbjct: 129 EP-----YPARSCVEVSKLPKGV 146
>pdb|2B33|A Chain A, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
pdb|2B33|B Chain B, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
Length = 140
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 491
AP IGPYSQA + ++ ++GQ+ +DP T L G + E+ L+N +A+ + S+
Sbjct: 22 APKAIGPYSQAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSL 81
Query: 492 STSAIYFVVYCSTYVASSERL-KIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASN 550
VV + + S + ++ E + R P FV +
Sbjct: 82 KD-----VVKVTVFTTSMDYFQRVNEVYSRYFGDHR--------------PARSFVAVAQ 122
Query: 551 LPKSALVEIKPI 562
LP++ +EI+ I
Sbjct: 123 LPRNVEIEIEAI 134
>pdb|3R0P|A Chain A, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|B Chain B, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|C Chain C, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|D Chain D, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|E Chain E, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|F Chain F, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
Length = 127
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 419 SKRVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQ 478
+K ++H + AP+ IG YSQA + ++GQ+ LDP TM L G V+ Q +
Sbjct: 3 NKAIIHSDN----APAAIGTYSQAVKVNNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFK 58
Query: 479 NSEAVAK 485
N AV +
Sbjct: 59 NLRAVCE 65
>pdb|2UYJ|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYN|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYN|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYP|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYK|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Serine
Length = 129
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 324 ETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITH 383
+T + A + D R+ L+ +++ +V G G ++ + ++I+D+N+FA NE Y +F
Sbjct: 38 QTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDE 97
Query: 384 EKCPCGVPSRSTIELPLL 401
+ P+RS +++ L
Sbjct: 98 HQAT--YPTRSCVQVARL 113
>pdb|2UYN|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
Length = 129
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 324 ETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITH 383
+T + A + D R+ L+ + + +V G G ++ + ++I+D+N+FA NE Y +F
Sbjct: 38 QTGEIPADVQDQARLSLENVXAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDE 97
Query: 384 EKCPCGVPSRSTIELPLL 401
+ P+RS +++ L
Sbjct: 98 HQAT--YPTRSCVQVARL 113
>pdb|1QD9|A Chain A, Bacillus Subtilis Yabj
pdb|1QD9|B Chain B, Bacillus Subtilis Yabj
pdb|1QD9|C Chain C, Bacillus Subtilis Yabj
Length = 124
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 491
AP+ IGPYSQ + + +GQ+ L P+ + NG + Q N +AV + S
Sbjct: 9 APAAIGPYSQGIIVNNMFYSSGQIPLT-PSGEMVNGDIKEQTHQVFSNLKAVLEEAGASF 67
Query: 492 STSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNL 551
T VV + ++A E+ +++ Q H RS +V + L
Sbjct: 68 ET-----VVKATVFIADMEQFA---EVNEVYGQYFDTHKPARSCVEV----------ARL 109
Query: 552 PKSALVEIKPILYV 565
PK ALVEI+ I V
Sbjct: 110 PKDALVEIEVIALV 123
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 339 VLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIEL 398
V +++ L G + V+ ++I+DM +FA NE Y ++ K P+RS +E+
Sbjct: 52 VFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHK-----PARSCVEV 106
Query: 399 PLL 401
L
Sbjct: 107 ARL 109
>pdb|3K0T|A Chain A, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|B Chain B, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|C Chain C, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
Length = 143
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAK 485
AP+ IGPYSQA + +GQ+ LDP T L G ++ Q +N ++VA+
Sbjct: 28 APAAIGPYSQAIKAGNTVYXSGQIPLDPSTXELVE-GIEAQITQVFENLKSVAQ 80
>pdb|2CWJ|A Chain A, Crystal Structure Of Ape1501, A Putative Endonuclease From
Aeropyrum Pernix
Length = 123
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAK 485
AP +GPYSQA + ++GQ+ ++P T L GG ++AL N +A+ +
Sbjct: 4 APKPVGPYSQAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVE 57
>pdb|1J7H|A Chain A, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|B Chain B, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|C Chain C, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
Length = 130
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 325 TQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHE 384
T + A ++ R L+ +++ + + G ++ +++ D+N+FA N Y +F
Sbjct: 40 TGEVPADIVAQARQSLENVKAIIEKAGLTAADIVKTTVFVKDLNDFAAVNAEYERFFKEN 99
Query: 385 KCPCGVPSRSTIELPLL--EVGL 405
P P+RS +E+ L +VGL
Sbjct: 100 NHP-NFPARSCVEVARLPKDVGL 121
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 421 RVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNS 480
+++H + AP+ IGPY QA ++ +GQ+ ++P T + P + QA Q+
Sbjct: 4 QIIHTEK----APAAIGPYVQAVDLGNLVLTSGQIPVNPATGEV----PADIVAQARQSL 55
Query: 481 EAVAKCFNCSISTSAIYFVVYCSTYVAS-SERLKIQEKLDAFLKQMRVWHFEERSMSKVL 539
E V + T+A +V + +V ++ + + + F K+ +F RS +V
Sbjct: 56 ENVKAIIEKAGLTAAD--IVKTTVFVKDLNDFAAVNAEYERFFKENNHPNFPARSCVEV- 112
Query: 540 DPIFLFVLASNLPKSALVEIKPI 562
+ LPK +EI+ I
Sbjct: 113 ---------ARLPKDVGLEIEAI 126
>pdb|3VCZ|A Chain A, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|B Chain B, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|C Chain C, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
Length = 153
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 21/143 (14%)
Query: 421 RVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNS 480
+VLH S AP+ IGPY Q ++ +GQ+ ++P T + + Q+L N
Sbjct: 27 KVLHTDS----APAAIGPYIQGVDLGNMVLTSGQIPVNPATGEV-PADIAAQARQSLDNV 81
Query: 481 EAVAKCFNCSISTSAIYFVVYCSTYVASSERL-KIQEKLDAFLKQMRVWHFEERSMSKVL 539
+AV + ++ +V + +V + E F + V H+ RS +V
Sbjct: 82 KAVVEASGLTVGD-----IVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEV- 135
Query: 540 DPIFLFVLASNLPKSALVEIKPI 562
+ LPK +EI+ I
Sbjct: 136 ---------ARLPKDVGIEIEAI 149
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 325 TQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHE 384
T + A + R L +++ + G G ++ + +++ D+N+F NE Y F E
Sbjct: 63 TGEVPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFD-E 121
Query: 385 KCPCGVPSRSTIELPLLEVGLG 406
P+RS +E+ L +G
Sbjct: 122 HNVAHYPARSCVEVARLPKDVG 143
>pdb|3L7Q|A Chain A, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|B Chain B, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|C Chain C, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|D Chain D, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|E Chain E, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|F Chain F, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|G Chain G, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|H Chain H, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|I Chain I, Crystal Structure Of Aldr From Streptococcus Mutans
Length = 125
Score = 36.6 bits (83), Expect = 0.057, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 339 VLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIEL 398
VLK I + L G D+ HV+ ++SD+++F NE Y + P+RS +E+
Sbjct: 53 VLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKSD-----FPARSAVEV 107
Query: 399 PLLEVGLGKAYIEVL 413
L + K IEV+
Sbjct: 108 ARLPKDV-KIEIEVI 121
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVE--LEQALQNSEAV 483
AP+ IGPY Q + +L +GQ+ L P T + G T+E +Q L+N A+
Sbjct: 9 APAAIGPYVQGKIVGNLLFASGQVPLSPETGQVI--GTTIEEQTQQVLKNISAI 60
>pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|B Chain B, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|C Chain C, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
Length = 128
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 324 ETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITH 383
+T + A + R L +++ + G G ++ +++ D+N+FA N TY F T
Sbjct: 38 KTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTE 97
Query: 384 EKCPCGVPSRSTIELPLL 401
P+RS +E+ L
Sbjct: 98 HNAT--FPARSXVEVARL 113
>pdb|2CSL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CW4|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
Length = 124
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 432 APSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSI 491
AP+ IGPY+QA + ++GQ+ L P +L G V+ E+ +N +AV +
Sbjct: 9 APAAIGPYAQAVKAGGFVFVSGQIPL-APDGSLVEGDIRVQTERVXENLKAVLEA----- 62
Query: 492 STSAIYFVVYCSTYVASSE 510
+ S + VV + ++A E
Sbjct: 63 AGSGLSRVVQTTCFLADXE 81
>pdb|1JD1|A Chain A, Crystal Structure Of Yeo7_yeast
pdb|1JD1|B Chain B, Crystal Structure Of Yeo7_yeast
pdb|1JD1|C Chain C, Crystal Structure Of Yeo7_yeast
pdb|1JD1|D Chain D, Crystal Structure Of Yeo7_yeast
pdb|1JD1|E Chain E, Crystal Structure Of Yeo7_yeast
pdb|1JD1|F Chain F, Crystal Structure Of Yeo7_yeast
Length = 129
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 332 LLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVP 391
+ D V++ I++ L V+ ++++++D+N FA N Y K+ K P
Sbjct: 49 IADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHK-----P 103
Query: 392 SRSTIELPLLEVGL 405
+RS + + L +G+
Sbjct: 104 ARSCVAVAALPLGV 117
>pdb|2DGA|A Chain A, Crystal Structure Of Hexameric Beta-Glucosidase In Wheat
pdb|3AIQ|A Chain A, Crystal Structure Of Beta-Glucosidase In Wheat Complexed
With An Aglycone Dimboa
pdb|3AIR|A Chain A, Crystal Structure Of Beta-Glucosidase In Wheat Complexed
With 2-Deoxy- 2-Fluoroglucoside And Dinitrophenol
Length = 565
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 20 CIQYGHQIVALANLMPADD-SVDELDSYMYQ-TVGHQIIVSYAECMGLPLFRRRIHGSTR 77
C YG I A P D +V E DS T GH I++++AE + L R +HG ++
Sbjct: 242 CFSYGEGIHAPGRCSPGMDCAVPEGDSLREPYTAGHHILLAHAEAVQLFKARYNMHGDSK 301
>pdb|3AIS|A Chain A, Crystal Structure Of A Mutant Beta-Glucosidase In Wheat
Complexed With Dimboa-Glc
Length = 565
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 20 CIQYGHQIVALANLMPADD-SVDELDSYMYQ-TVGHQIIVSYAECMGLPLFRRRIHGSTR 77
C YG I A P D +V E DS T GH I++++AE + L R +HG ++
Sbjct: 242 CFSYGEGIHAPGRCSPGMDCAVPEGDSLREPYTAGHHILLAHAEAVQLFKARYNMHGDSK 301
>pdb|3MQW|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
Length = 148
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQ 478
S AP +G YSQA + ++ +GQ+GLD T G T+E EQ+ Q
Sbjct: 30 SPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFA--GKTIE-EQSKQ 76
>pdb|3M4S|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
Length = 148
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQ 478
S AP +G YSQA + ++ +GQ+GLD T G T+E EQ+ Q
Sbjct: 30 SPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFA--GKTIE-EQSKQ 76
>pdb|3M1X|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Rhomobohedral Form
Length = 148
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQ 478
S AP +G YSQA + + +GQ+GLD T G T+E EQ+ Q
Sbjct: 30 SPLAPEAVGAYSQAIICNGXVYCSGQIGLDRKTGDFA--GKTIE-EQSKQ 76
>pdb|3KJJ|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJK|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
Length = 128
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 339 VLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIEL 398
VL QI+ L G D HVL +Y+ D ++A N + ++ + P+R+ +E
Sbjct: 50 VLAQIDRWLAECGSDKAHVLDAVIYLRDXGDYAEXNGVWDAWVAAGR----TPARACVEA 105
Query: 399 PL 400
L
Sbjct: 106 RL 107
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 268 EKTGLVFEVQGECPQNSEAMCLPVAEVTDSVEVTDNRLNISRRKKDNTFSICCWLQETQK 327
E GL F+VQ + + +V R ++ +T+ L++ +K
Sbjct: 237 ESIGLAFQVQDD-----------ILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARK 285
Query: 328 TSAGLLDDLRVVLKQI 343
+ L+DD R LKQ+
Sbjct: 286 KARDLIDDARQALKQL 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,428,569
Number of Sequences: 62578
Number of extensions: 805400
Number of successful extensions: 1788
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1739
Number of HSP's gapped (non-prelim): 45
length of query: 742
length of database: 14,973,337
effective HSP length: 106
effective length of query: 636
effective length of database: 8,340,069
effective search space: 5304283884
effective search space used: 5304283884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)