Query 004613
Match_columns 742
No_of_seqs 514 out of 2714
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2316 Predicted ATPase (PP-l 100.0 2.5E-88 5.4E-93 666.3 22.2 250 1-252 1-250 (277)
2 COG2102 Predicted ATPases of P 100.0 5.5E-67 1.2E-71 524.1 25.5 222 1-250 1-223 (223)
3 TIGR00290 MJ0570_dom MJ0570-re 100.0 3.6E-65 7.8E-70 521.2 26.7 221 1-250 1-222 (223)
4 TIGR00289 conserved hypothetic 100.0 1.6E-63 3.5E-68 509.1 26.7 221 1-251 1-222 (222)
5 PF01902 ATP_bind_4: ATP-bindi 100.0 4.9E-64 1.1E-68 512.4 22.8 217 1-246 1-218 (218)
6 cd01994 Alpha_ANH_like_IV This 100.0 1.2E-54 2.6E-59 437.7 23.1 192 2-214 1-194 (194)
7 TIGR03679 arCOG00187 arCOG0018 100.0 1.1E-53 2.3E-58 438.3 25.8 217 4-245 1-218 (218)
8 KOG2317 Putative translation i 99.9 5E-25 1.1E-29 207.4 10.7 126 422-565 5-130 (138)
9 COG0251 TdcF Putative translat 99.9 3.9E-23 8.5E-28 196.0 15.2 121 429-567 9-130 (130)
10 TIGR00004 endoribonuclease L-P 99.9 7.8E-23 1.7E-27 192.1 15.7 119 428-564 5-123 (124)
11 PRK11401 putative endoribonucl 99.9 1.9E-22 4.1E-27 191.0 15.5 122 429-566 7-128 (129)
12 PF01042 Ribonuc_L-PSP: Endori 99.9 2.1E-22 4.5E-27 188.5 14.4 119 431-565 3-121 (121)
13 TIGR03610 RutC pyrimidine util 99.9 4E-22 8.7E-27 188.4 15.7 119 429-565 8-126 (127)
14 cd06154 YjgF_YER057c_UK114_lik 99.9 3.6E-21 7.8E-26 179.8 14.4 116 429-563 3-119 (119)
15 cd06152 YjgF_YER057c_UK114_lik 99.9 5.6E-21 1.2E-25 177.4 14.0 111 438-564 2-114 (114)
16 cd06156 eu_AANH_C_2 A group of 99.8 1.3E-20 2.8E-25 176.0 14.2 118 439-563 1-118 (118)
17 cd02199 YjgF_YER057c_UK114_lik 99.8 3.2E-20 6.9E-25 178.7 13.7 118 429-563 6-141 (142)
18 cd06150 YjgF_YER057c_UK114_lik 99.8 1.3E-19 2.8E-24 165.6 13.1 104 438-564 2-105 (105)
19 cd02198 YjgH_like YjgH belongs 99.8 1.7E-19 3.8E-24 166.4 12.8 108 438-564 2-110 (111)
20 cd00448 YjgF_YER057c_UK114_fam 99.8 2.7E-18 5.9E-23 155.7 13.8 107 439-563 1-107 (107)
21 cd06153 YjgF_YER057c_UK114_lik 99.8 8.6E-18 1.9E-22 156.0 13.5 105 439-563 1-114 (114)
22 cd06151 YjgF_YER057c_UK114_lik 99.7 9.4E-17 2E-21 151.6 13.6 114 439-563 1-126 (126)
23 cd06155 eu_AANH_C_1 A group of 99.7 8E-17 1.7E-21 146.3 12.3 98 443-564 4-101 (101)
24 cd06155 eu_AANH_C_1 A group of 99.6 2.6E-15 5.6E-20 136.4 11.2 80 329-414 21-100 (101)
25 cd06150 YjgF_YER057c_UK114_lik 99.6 3.2E-15 6.9E-20 136.7 11.2 81 329-414 24-104 (105)
26 cd06152 YjgF_YER057c_UK114_lik 99.6 1.2E-14 2.6E-19 135.1 11.9 81 329-414 29-113 (114)
27 COG0251 TdcF Putative translat 99.6 1.6E-14 3.4E-19 137.3 12.3 83 329-416 46-128 (130)
28 TIGR03610 RutC pyrimidine util 99.6 1.4E-14 2.9E-19 137.2 10.1 81 329-415 45-125 (127)
29 PRK11401 putative endoribonucl 99.5 6.2E-14 1.3E-18 132.9 11.9 84 329-415 43-126 (129)
30 cd06154 YjgF_YER057c_UK114_lik 99.5 8.2E-14 1.8E-18 130.2 11.5 79 329-413 39-118 (119)
31 cd02198 YjgH_like YjgH belongs 99.5 1.2E-13 2.6E-18 127.5 10.7 82 329-415 28-110 (111)
32 PF01042 Ribonuc_L-PSP: Endori 99.5 1.6E-13 3.4E-18 128.6 10.9 83 329-415 38-120 (121)
33 TIGR00004 endoribonuclease L-P 99.5 2.7E-13 5.9E-18 127.4 10.1 80 330-415 44-123 (124)
34 cd00448 YjgF_YER057c_UK114_fam 99.4 9.1E-13 2E-17 119.5 10.9 80 329-413 27-106 (107)
35 TIGR00032 argG argininosuccina 99.4 1.3E-12 2.9E-17 145.0 14.1 166 2-181 1-183 (394)
36 cd06153 YjgF_YER057c_UK114_lik 99.4 1.2E-12 2.7E-17 121.6 11.2 78 329-413 31-113 (114)
37 PF14588 YjgF_endoribonc: YjgF 99.4 1.5E-12 3.3E-17 125.0 11.8 126 430-564 12-147 (148)
38 cd02199 YjgF_YER057c_UK114_lik 99.4 7.3E-13 1.6E-17 127.8 9.0 80 330-414 52-141 (142)
39 cd06151 YjgF_YER057c_UK114_lik 99.4 1.1E-12 2.4E-17 123.9 9.9 84 329-413 36-125 (126)
40 cd06156 eu_AANH_C_2 A group of 99.4 1.6E-12 3.4E-17 121.6 10.3 82 329-413 28-117 (118)
41 cd01995 ExsB ExsB is a transcr 99.3 1E-10 2.2E-15 115.3 15.4 145 2-178 1-157 (169)
42 KOG2317 Putative translation i 99.0 1.7E-09 3.7E-14 102.7 7.8 81 329-415 49-129 (138)
43 COG0482 TrmU Predicted tRNA(5- 98.9 6.3E-09 1.4E-13 113.2 9.3 148 1-155 4-166 (356)
44 PF03054 tRNA_Me_trans: tRNA m 98.8 5.5E-10 1.2E-14 122.6 -1.2 145 1-149 1-162 (356)
45 PRK14561 hypothetical protein; 98.7 1.1E-07 2.3E-12 96.6 12.9 135 1-152 1-143 (194)
46 TIGR00420 trmU tRNA (5-methyla 98.7 4.5E-08 9.7E-13 108.0 9.8 160 1-169 1-195 (352)
47 PRK00143 mnmA tRNA-specific 2- 98.6 1.8E-07 4E-12 103.0 11.8 157 1-159 1-182 (346)
48 PRK08349 hypothetical protein; 98.6 4.9E-07 1.1E-11 91.9 12.7 145 1-158 1-159 (198)
49 cd01990 Alpha_ANH_like_I This 98.5 9.4E-07 2E-11 89.7 11.9 142 3-159 1-148 (202)
50 PRK14665 mnmA tRNA-specific 2- 98.5 1.9E-07 4E-12 103.3 6.4 136 2-148 7-156 (360)
51 PRK08384 thiamine biosynthesis 98.4 2.7E-06 5.9E-11 94.7 13.2 141 2-159 182-340 (381)
52 TIGR00364 exsB protein. This p 98.4 6.3E-06 1.4E-10 83.8 14.7 143 3-157 1-173 (201)
53 PRK13820 argininosuccinate syn 98.4 2.8E-06 6E-11 94.8 12.8 164 2-180 4-183 (394)
54 TIGR02432 lysidine_TilS_N tRNA 98.4 1.3E-05 2.7E-10 80.4 16.0 147 2-161 1-169 (189)
55 TIGR00268 conserved hypothetic 98.3 7.7E-06 1.7E-10 86.3 12.7 142 2-159 14-160 (252)
56 cd01712 ThiI ThiI is required 98.3 9.1E-06 2E-10 80.9 12.5 150 2-164 1-163 (177)
57 cd01993 Alpha_ANH_like_II This 98.3 2.4E-05 5.3E-10 77.6 15.5 147 2-158 1-173 (185)
58 cd01998 tRNA_Me_trans tRNA met 98.2 3E-06 6.4E-11 93.6 8.5 152 2-158 1-182 (349)
59 PRK04527 argininosuccinate syn 98.2 3.8E-06 8.2E-11 93.7 9.0 163 2-180 4-187 (400)
60 cd01992 PP-ATPase N-terminal d 98.2 3.9E-05 8.4E-10 76.4 15.1 143 2-160 1-164 (185)
61 PLN00200 argininosuccinate syn 98.2 8.1E-06 1.8E-10 91.4 11.2 163 2-179 7-189 (404)
62 TIGR00342 thiazole biosynthesi 98.2 1.2E-05 2.7E-10 89.5 12.1 143 2-157 174-328 (371)
63 PRK14664 tRNA-specific 2-thiou 98.1 9.9E-06 2.1E-10 89.7 10.6 152 2-169 7-187 (362)
64 PF06508 QueC: Queuosine biosy 98.1 5.2E-05 1.1E-09 78.0 14.9 143 2-156 1-174 (209)
65 PRK01565 thiamine biosynthesis 98.1 1.7E-05 3.7E-10 89.1 12.2 143 2-157 178-332 (394)
66 PF02568 ThiI: Thiamine biosyn 98.1 9.9E-06 2.1E-10 82.4 9.3 143 1-156 4-160 (197)
67 PRK00509 argininosuccinate syn 98.1 9.7E-06 2.1E-10 90.6 8.9 164 2-180 4-186 (399)
68 PRK11106 queuosine biosynthesi 98.0 0.00015 3.3E-09 75.7 15.7 147 1-159 2-180 (231)
69 COG2117 Predicted subunit of t 98.0 1.2E-05 2.6E-10 77.9 5.9 60 1-73 1-60 (198)
70 cd01999 Argininosuccinate_Synt 97.9 6.5E-05 1.4E-09 83.9 12.3 163 3-180 1-183 (385)
71 PRK00919 GMP synthase subunit 97.9 5.8E-05 1.3E-09 81.9 11.3 165 2-181 23-202 (307)
72 TIGR00884 guaA_Cterm GMP synth 97.9 7.5E-05 1.6E-09 81.3 12.2 165 2-181 18-204 (311)
73 PRK10696 tRNA 2-thiocytidine b 97.9 0.00058 1.3E-08 72.4 17.1 145 2-160 31-198 (258)
74 PRK08576 hypothetical protein; 97.9 0.00012 2.6E-09 82.9 12.4 141 2-158 236-386 (438)
75 cd01997 GMP_synthase_C The C-t 97.8 0.00011 2.4E-09 79.4 11.6 163 2-180 1-188 (295)
76 PRK01269 tRNA s(4)U8 sulfurtra 97.8 0.0001 2.2E-09 84.9 11.4 142 2-157 179-333 (482)
77 PF01171 ATP_bind_3: PP-loop f 97.8 0.00053 1.2E-08 68.6 15.1 117 2-133 1-122 (182)
78 COG0037 MesJ tRNA(Ile)-lysidin 97.7 0.00093 2E-08 71.7 16.1 148 2-160 23-189 (298)
79 cd01986 Alpha_ANH_like Adenine 97.7 0.00033 7.2E-09 63.6 10.3 82 3-128 1-82 (103)
80 PRK00074 guaA GMP synthase; Re 97.6 0.00015 3.3E-09 84.1 9.5 165 2-180 217-403 (511)
81 cd01713 PAPS_reductase This do 97.6 0.00035 7.6E-09 67.5 10.6 144 2-157 1-159 (173)
82 cd01996 Alpha_ANH_like_III Thi 97.6 0.00045 9.7E-09 66.9 11.0 59 2-72 3-62 (154)
83 COG0603 Predicted PP-loop supe 97.6 0.00099 2.1E-08 68.8 13.7 144 1-156 3-177 (222)
84 PRK05370 argininosuccinate syn 97.3 0.0025 5.4E-08 71.8 13.2 165 1-180 12-203 (447)
85 PRK05253 sulfate adenylyltrans 97.2 0.0037 7.9E-08 67.9 13.0 106 2-120 29-140 (301)
86 TIGR03573 WbuX N-acetyl sugar 97.2 0.0019 4.1E-08 71.4 10.8 60 3-73 62-122 (343)
87 PF00764 Arginosuc_synth: Argi 97.1 0.0013 2.7E-08 73.5 8.4 162 4-180 1-181 (388)
88 PRK02090 phosphoadenosine phos 96.8 0.006 1.3E-07 64.1 9.6 141 2-157 42-192 (241)
89 TIGR02039 CysD sulfate adenyly 96.7 0.018 4E-07 62.2 12.7 103 3-118 22-130 (294)
90 COG1606 ATP-utilizing enzymes 96.7 0.006 1.3E-07 63.9 8.6 106 2-124 19-130 (269)
91 PLN02347 GMP synthetase 96.7 0.0078 1.7E-07 70.3 10.4 167 2-181 231-429 (536)
92 TIGR00552 nadE NAD+ synthetase 96.7 0.0052 1.1E-07 64.9 8.1 62 2-73 24-86 (250)
93 PRK13980 NAD synthetase; Provi 96.6 0.008 1.7E-07 64.0 9.3 60 2-72 32-93 (265)
94 PF01507 PAPS_reduct: Phosphoa 96.5 0.0036 7.7E-08 61.2 5.3 144 2-158 1-154 (174)
95 PRK10660 tilS tRNA(Ile)-lysidi 96.4 0.054 1.2E-06 61.9 14.8 112 2-132 17-135 (436)
96 KOG2805 tRNA (5-methylaminomet 96.4 0.012 2.7E-07 63.0 8.7 66 2-72 7-75 (377)
97 COG0137 ArgG Argininosuccinate 96.4 0.0058 1.3E-07 67.4 6.3 163 1-180 5-188 (403)
98 PRK12563 sulfate adenylyltrans 96.3 0.014 3E-07 63.6 8.9 117 2-139 39-161 (312)
99 cd00553 NAD_synthase NAD+ synt 96.3 0.015 3.3E-07 61.2 8.6 61 2-73 25-87 (248)
100 cd01984 AANH_like Adenine nucl 96.2 0.019 4.2E-07 49.9 7.6 29 3-31 1-32 (86)
101 COG0301 ThiI Thiamine biosynth 96.0 0.039 8.4E-07 61.6 10.5 36 2-37 177-212 (383)
102 cd01991 Asn_Synthase_B_C The C 95.9 0.034 7.4E-07 58.5 9.2 103 2-117 17-126 (269)
103 TIGR00434 cysH phosophoadenyly 95.8 0.037 8E-07 56.8 8.8 141 2-158 15-168 (212)
104 PRK02628 nadE NAD synthetase; 95.1 0.087 1.9E-06 63.5 9.9 61 2-73 363-430 (679)
105 PRK13794 hypothetical protein; 95.0 0.17 3.8E-06 58.5 11.5 144 2-157 249-402 (479)
106 PRK13795 hypothetical protein; 94.9 0.22 4.8E-06 59.6 12.5 146 2-158 245-399 (636)
107 PRK08557 hypothetical protein; 94.5 0.081 1.7E-06 60.1 7.0 59 2-71 183-241 (417)
108 COG1365 Predicted ATPase (PP-l 94.4 0.019 4.1E-07 58.6 1.6 121 1-141 61-189 (255)
109 PRK00876 nadE NAD synthetase; 94.3 0.086 1.9E-06 58.0 6.6 61 2-73 35-97 (326)
110 PF00733 Asn_synthase: Asparag 94.3 0.14 3E-06 52.8 7.9 63 2-74 19-81 (255)
111 PRK11572 copper homeostasis pr 94.2 0.67 1.4E-05 49.1 12.6 153 12-193 9-168 (248)
112 PF02540 NAD_synthase: NAD syn 94.2 0.3 6.5E-06 51.5 10.1 61 2-73 20-82 (242)
113 TIGR03183 DNA_S_dndC putative 93.8 0.23 4.9E-06 56.9 9.0 109 3-117 16-148 (447)
114 PF03932 CutC: CutC family; I 93.4 1 2.3E-05 46.2 12.2 129 12-163 8-147 (201)
115 COG0175 CysH 3'-phosphoadenosi 93.3 0.45 9.9E-06 50.7 9.7 62 3-75 42-103 (261)
116 TIGR01536 asn_synth_AEB aspara 92.2 0.67 1.4E-05 53.4 9.8 104 2-117 255-366 (467)
117 PRK05647 purN phosphoribosylgl 92.1 0.93 2E-05 46.5 9.8 54 1-71 2-58 (200)
118 PRK13981 NAD synthetase; Provi 92.0 0.55 1.2E-05 55.2 9.1 61 2-73 282-344 (540)
119 PTZ00323 NAD+ synthase; Provis 91.9 0.28 6E-06 53.3 5.9 62 2-73 48-114 (294)
120 PRK06850 hypothetical protein; 91.9 0.59 1.3E-05 54.3 8.8 110 2-117 36-169 (507)
121 TIGR02057 PAPS_reductase phosp 90.7 1.1 2.4E-05 46.8 8.8 53 2-67 27-82 (226)
122 PF14588 YjgF_endoribonc: YjgF 90.6 1.4 3.1E-05 43.1 8.8 77 333-414 60-146 (148)
123 PRK13011 formyltetrahydrofolat 89.3 2.2 4.8E-05 46.2 9.9 53 1-72 90-145 (286)
124 TIGR00639 PurN phosphoribosylg 88.4 3.5 7.5E-05 42.0 10.1 54 1-71 1-57 (190)
125 COG3969 Predicted phosphoadeno 87.9 0.54 1.2E-05 51.4 4.0 32 2-33 29-64 (407)
126 PRK06027 purU formyltetrahydro 86.3 4 8.6E-05 44.2 9.7 53 1-72 90-145 (286)
127 PRK00768 nadE NAD synthetase; 85.7 2.8 6.1E-05 45.0 8.0 61 2-73 40-110 (268)
128 PRK00748 1-(5-phosphoribosyl)- 84.8 51 0.0011 34.0 16.8 152 12-202 31-198 (233)
129 COG0519 GuaA GMP synthase, PP- 84.3 4.6 9.9E-05 43.4 8.6 63 2-74 23-86 (315)
130 TIGR00007 phosphoribosylformim 84.1 55 0.0012 33.8 16.7 153 12-203 29-198 (230)
131 COG3142 CutC Uncharacterized p 83.9 14 0.0003 38.8 11.7 132 12-163 9-148 (241)
132 PF00875 DNA_photolyase: DNA p 83.8 2.4 5.3E-05 41.5 6.1 94 15-131 15-112 (165)
133 TIGR00655 PurU formyltetrahydr 83.1 7.1 0.00015 42.2 9.7 53 1-72 85-140 (280)
134 PRK13010 purU formyltetrahydro 82.7 7.1 0.00015 42.4 9.6 54 1-73 94-150 (289)
135 TIGR02765 crypto_DASH cryptoch 80.9 5.9 0.00013 45.1 8.7 99 15-136 17-128 (429)
136 TIGR03556 photolyase_8HDF deox 80.3 8.1 0.00018 44.8 9.6 94 15-131 17-114 (471)
137 PRK09431 asnB asparagine synth 78.0 8.3 0.00018 45.7 8.9 59 2-73 229-301 (554)
138 TIGR03108 eps_aminotran_1 exos 75.3 9.5 0.00021 45.7 8.6 61 2-73 260-321 (628)
139 PLN02828 formyltetrahydrofolat 75.1 15 0.00033 39.5 9.1 59 1-73 71-132 (268)
140 cd04732 HisA HisA. Phosphorib 75.0 1.1E+02 0.0023 31.6 18.4 153 12-203 30-199 (234)
141 PLN02339 NAD+ synthase (glutam 74.6 7.2 0.00016 47.5 7.3 21 53-73 428-448 (700)
142 cd04731 HisF The cyclase subun 73.8 1.2E+02 0.0026 31.6 17.5 154 12-204 28-203 (243)
143 COG0171 NadE NAD synthase [Coe 73.5 6.3 0.00014 42.4 5.7 62 2-73 27-93 (268)
144 TIGR03471 HpnJ hopanoid biosyn 72.3 12 0.00025 43.3 8.1 104 90-198 228-340 (472)
145 KOG4013 Predicted Cu2+ homeost 72.3 10 0.00022 38.7 6.5 105 56-172 51-162 (255)
146 PF06506 PrpR_N: Propionate ca 70.7 7.5 0.00016 38.8 5.3 86 56-163 45-132 (176)
147 TIGR03104 trio_amidotrans aspa 70.4 14 0.0003 44.1 8.3 63 2-74 262-327 (589)
148 PLN02331 phosphoribosylglycina 69.8 39 0.00085 34.9 10.4 53 2-71 1-56 (207)
149 PTZ00077 asparagine synthetase 67.7 18 0.00039 43.2 8.5 101 2-117 239-359 (586)
150 PF02677 DUF208: Uncharacteriz 66.3 10 0.00022 38.4 5.0 117 10-143 8-145 (176)
151 PRK01033 imidazole glycerol ph 65.0 1.9E+02 0.0042 30.6 15.3 147 17-202 36-204 (258)
152 PLN02549 asparagine synthase ( 63.2 32 0.00069 41.1 9.3 102 2-118 227-346 (578)
153 PF00532 Peripla_BP_1: Peripla 60.0 2.3E+02 0.0051 30.1 14.5 102 56-162 72-186 (279)
154 KOG1622 GMP synthase [Nucleoti 58.5 23 0.0005 40.5 6.6 59 2-71 232-292 (552)
155 PF00448 SRP54: SRP54-type pro 57.7 52 0.0011 33.5 8.6 76 8-112 11-88 (196)
156 TIGR00460 fmt methionyl-tRNA f 56.7 75 0.0016 34.8 10.2 61 1-70 1-62 (313)
157 TIGR03572 WbuZ glycosyl amidat 56.4 2.5E+02 0.0053 29.0 13.6 140 5-165 77-229 (232)
158 PRK00005 fmt methionyl-tRNA fo 56.0 64 0.0014 35.2 9.5 60 1-69 1-61 (309)
159 COG0367 AsnB Asparagine syntha 55.3 35 0.00075 40.5 7.8 61 2-73 232-294 (542)
160 PRK06843 inosine 5-monophospha 54.9 84 0.0018 35.9 10.4 45 92-164 179-223 (404)
161 TIGR00424 APS_reduc 5'-adenyly 52.9 32 0.00069 40.0 6.8 55 2-70 117-173 (463)
162 COG2403 Predicted GTPase [Gene 51.4 1.9E+02 0.004 32.9 11.9 165 1-208 7-202 (449)
163 TIGR02766 crypt_chrom_pln cryp 50.6 60 0.0013 37.6 8.7 98 16-136 15-119 (475)
164 COG0299 PurN Folate-dependent 50.5 1.3E+02 0.0028 31.1 9.8 56 1-73 1-59 (200)
165 PRK02083 imidazole glycerol ph 50.5 3.2E+02 0.007 28.6 15.7 147 19-204 38-207 (253)
166 PRK08125 bifunctional UDP-gluc 49.4 90 0.0019 37.7 10.2 58 1-70 1-59 (660)
167 PF06506 PrpR_N: Propionate ca 48.5 1E+02 0.0022 30.7 8.9 87 8-137 61-147 (176)
168 KOG1706 Argininosuccinate synt 48.3 17 0.00037 39.7 3.4 32 2-33 7-39 (412)
169 cd04740 DHOD_1B_like Dihydroor 47.5 3.9E+02 0.0083 28.7 14.8 147 2-171 91-267 (296)
170 TIGR02313 HpaI-NOT-DapA 2,4-di 47.5 91 0.002 33.8 9.0 120 11-166 82-209 (294)
171 PF02951 GSH-S_N: Prokaryotic 47.2 28 0.0006 33.0 4.3 30 1-30 1-37 (119)
172 PRK06988 putative formyltransf 46.7 1.3E+02 0.0027 33.1 10.0 58 1-69 3-60 (312)
173 TIGR00591 phr2 photolyase PhrI 46.4 1E+02 0.0022 35.5 9.6 94 16-132 40-138 (454)
174 COG2179 Predicted hydrolase of 45.0 99 0.0021 31.2 7.8 121 58-194 21-167 (175)
175 PRK02261 methylaspartate mutas 44.5 1.1E+02 0.0024 29.4 8.1 27 92-118 69-96 (137)
176 KOG0571 Asparagine synthase (g 42.7 80 0.0017 36.2 7.6 99 2-115 227-341 (543)
177 PRK13585 1-(5-phosphoribosyl)- 42.7 4E+02 0.0087 27.5 17.0 154 12-204 33-203 (241)
178 PRK10674 deoxyribodipyrimidine 42.0 1.2E+02 0.0027 35.1 9.5 99 15-132 18-121 (472)
179 cd02067 B12-binding B12 bindin 41.4 1.6E+02 0.0035 26.9 8.5 46 89-139 62-108 (119)
180 cd04724 Tryptophan_synthase_al 41.2 3.1E+02 0.0067 28.8 11.6 92 52-160 64-156 (242)
181 COG0223 Fmt Methionyl-tRNA for 40.8 1.2E+02 0.0025 33.5 8.4 51 13-70 13-63 (307)
182 COG2877 KdsA 3-deoxy-D-manno-o 40.6 1.4E+02 0.003 31.9 8.4 95 56-160 40-135 (279)
183 PRK15424 propionate catabolism 40.3 1.3E+02 0.0028 35.8 9.3 87 56-164 75-163 (538)
184 TIGR02329 propionate_PrpR prop 39.9 1.4E+02 0.0029 35.5 9.4 87 56-164 65-153 (526)
185 cd02071 MM_CoA_mut_B12_BD meth 39.6 1.8E+02 0.004 27.0 8.6 47 89-140 62-109 (122)
186 COG5019 CDC3 Septin family pro 37.5 67 0.0014 36.1 6.0 42 668-725 130-173 (373)
187 PRK14024 phosphoribosyl isomer 37.1 5.1E+02 0.011 27.1 17.3 151 12-202 33-198 (241)
188 PLN02231 alanine transaminase 37.1 2.9E+02 0.0064 32.6 11.7 106 4-137 194-308 (534)
189 PRK03620 5-dehydro-4-deoxygluc 36.6 2.3E+02 0.0051 30.8 10.1 87 56-165 124-213 (303)
190 cd02933 OYE_like_FMN Old yello 36.6 6.3E+02 0.014 28.0 14.7 138 14-162 155-313 (338)
191 TIGR02026 BchE magnesium-proto 35.7 64 0.0014 37.7 5.9 100 90-197 223-339 (497)
192 PRK07206 hypothetical protein; 34.8 4.6E+02 0.01 29.4 12.5 32 1-32 2-33 (416)
193 cd00954 NAL N-Acetylneuraminic 34.8 3.8E+02 0.0082 28.8 11.3 128 3-164 73-207 (288)
194 PRK13125 trpA tryptophan synth 34.6 5.6E+02 0.012 26.8 14.3 160 3-191 6-181 (244)
195 PRK13111 trpA tryptophan synth 34.2 5.7E+02 0.012 27.4 12.3 88 97-191 109-197 (258)
196 PRK01033 imidazole glycerol ph 33.6 2.3E+02 0.0051 30.0 9.3 51 47-117 179-229 (258)
197 PRK12702 mannosyl-3-phosphogly 33.4 3E+02 0.0064 30.4 10.0 97 56-160 48-173 (302)
198 PRK02083 imidazole glycerol ph 32.8 4.1E+02 0.009 27.8 11.0 51 49-119 182-232 (253)
199 PLN02368 alanine transaminase 32.7 4E+02 0.0086 30.3 11.5 104 4-135 133-245 (407)
200 cd00331 IGPS Indole-3-glycerol 32.6 4.9E+02 0.011 26.5 11.2 86 54-163 62-148 (217)
201 KOG0573 Asparagine synthase [A 32.3 53 0.0012 37.8 4.2 33 2-34 252-286 (520)
202 PRK12656 fructose-6-phosphate 32.2 2.8E+02 0.0061 29.1 9.3 72 94-181 94-171 (222)
203 COG2910 Putative NADH-flavin r 31.8 70 0.0015 32.9 4.6 32 1-32 1-32 (211)
204 PRK08636 aspartate aminotransf 31.3 4.2E+02 0.0091 29.6 11.4 107 4-137 98-212 (403)
205 PF00551 Formyl_trans_N: Formy 29.6 79 0.0017 31.6 4.7 33 1-33 1-36 (181)
206 COG1419 FlhF Flagellar GTP-bin 29.3 1.3E+02 0.0028 34.4 6.7 58 2-71 204-267 (407)
207 TIGR03249 KdgD 5-dehydro-4-deo 28.8 3.8E+02 0.0082 28.9 10.1 87 56-165 122-211 (296)
208 COG2515 Acd 1-aminocyclopropan 28.0 2.8E+02 0.006 30.7 8.6 87 46-144 11-100 (323)
209 PRK05096 guanosine 5'-monophos 28.0 2.7E+02 0.0058 31.2 8.6 24 329-352 298-321 (346)
210 TIGR03572 WbuZ glycosyl amidat 28.0 6.8E+02 0.015 25.7 18.0 152 12-202 31-205 (232)
211 PLN02309 5'-adenylylsulfate re 27.0 1.6E+02 0.0034 34.3 7.0 57 2-70 112-168 (457)
212 PF09079 Cdc6_C: CDC6, C termi 26.1 65 0.0014 28.0 2.9 44 107-158 12-55 (85)
213 PRK08361 aspartate aminotransf 26.0 3.6E+02 0.0078 29.9 9.6 96 4-133 96-199 (391)
214 PTZ00314 inosine-5'-monophosph 26.0 4.6E+02 0.01 30.8 10.7 56 147-202 294-352 (495)
215 PRK07259 dihydroorotate dehydr 26.0 2.7E+02 0.0059 30.0 8.4 150 3-177 94-275 (301)
216 PF00735 Septin: Septin; Inte 25.9 1.4E+02 0.0031 32.2 6.1 67 644-726 81-154 (281)
217 PRK05764 aspartate aminotransf 25.6 3.5E+02 0.0075 29.9 9.4 97 4-134 94-198 (393)
218 COG1089 Gmd GDP-D-mannose dehy 24.9 82 0.0018 34.5 3.9 32 1-32 1-34 (345)
219 PRK12815 carB carbamoyl phosph 24.4 7.6E+02 0.017 31.9 13.1 134 13-166 577-715 (1068)
220 cd04731 HisF The cyclase subun 24.0 8.2E+02 0.018 25.3 11.4 139 5-165 74-225 (243)
221 TIGR00109 hemH ferrochelatase. 23.9 9.9E+02 0.021 26.3 13.8 127 17-162 110-265 (322)
222 PRK04302 triosephosphate isome 23.9 6.1E+02 0.013 26.1 10.2 89 52-158 44-136 (223)
223 TIGR01037 pyrD_sub1_fam dihydr 23.7 5.6E+02 0.012 27.5 10.3 166 3-195 93-289 (300)
224 COG0415 PhrB Deoxyribodipyrimi 23.5 2.1E+02 0.0046 33.3 7.2 88 15-125 18-108 (461)
225 KOG2840 Uncharacterized conser 23.5 1.3E+02 0.0028 33.4 5.1 62 2-71 53-119 (347)
226 PRK13587 1-(5-phosphoribosyl)- 23.3 8.7E+02 0.019 25.4 12.3 152 12-202 32-200 (234)
227 PRK06939 2-amino-3-ketobutyrat 22.8 5.5E+02 0.012 28.1 10.2 20 470-489 377-396 (397)
228 cd08768 Cdc6_C Winged-helix do 22.7 71 0.0015 27.5 2.5 44 107-158 19-62 (87)
229 PTZ00377 alanine aminotransfer 22.6 6.4E+02 0.014 29.0 11.1 106 4-137 141-255 (481)
230 PRK07309 aromatic amino acid a 22.6 5.9E+02 0.013 28.3 10.5 50 4-72 94-144 (391)
231 PF00478 IMPDH: IMP dehydrogen 22.1 7.3E+02 0.016 28.0 10.8 101 53-202 110-219 (352)
232 cd02070 corrinoid_protein_B12- 22.1 3.9E+02 0.0085 27.1 8.2 83 48-138 94-189 (201)
233 COG4087 Soluble P-type ATPase 21.9 3.6E+02 0.0078 26.4 7.1 63 56-139 59-121 (152)
234 TIGR03551 F420_cofH 7,8-dideme 21.8 3.2E+02 0.007 30.2 8.1 69 91-161 72-156 (343)
235 PRK00035 hemH ferrochelatase; 21.7 1.1E+03 0.023 25.9 14.4 128 16-162 110-267 (333)
236 PRK14719 bifunctional RNAse/5- 21.7 6.2E+02 0.013 28.5 10.3 94 89-199 5-100 (360)
237 PRK00885 phosphoribosylamine-- 21.6 8.7E+02 0.019 27.4 11.7 36 331-366 240-276 (420)
238 PRK12745 3-ketoacyl-(acyl-carr 21.5 6.2E+02 0.013 25.7 9.7 26 91-116 64-89 (256)
239 PF00282 Pyridoxal_deC: Pyrido 21.4 1E+03 0.022 26.7 12.0 73 4-104 106-191 (373)
240 KOG2655 Septin family protein 21.1 1.4E+02 0.003 33.7 4.9 43 668-726 126-170 (366)
241 PRK12414 putative aminotransfe 21.0 5.8E+02 0.013 28.2 10.0 96 4-134 93-196 (384)
242 PF07876 Dabb: Stress responsi 20.7 1.3E+02 0.0028 26.2 3.9 33 87-119 14-46 (97)
243 TIGR01501 MthylAspMutase methy 20.5 6E+02 0.013 24.5 8.6 22 49-70 14-35 (134)
244 PLN02285 methionyl-tRNA formyl 20.4 4.7E+02 0.01 29.0 9.0 37 24-67 35-71 (334)
245 cd02641 R3H_Smubp-2_like R3H d 20.2 2E+02 0.0043 23.8 4.5 46 93-139 3-48 (60)
246 PRK09061 D-glutamate deacylase 20.1 7.4E+02 0.016 29.1 11.0 110 86-205 163-286 (509)
No 1
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=100.00 E-value=2.5e-88 Score=666.29 Aligned_cols=250 Identities=67% Similarity=1.112 Sum_probs=246.0
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
||++||+||||||||||++|++.||+||||+|++|+++..+|+||||||||||++++++|+|||+||||+.|+|.+.||.
T Consensus 1 MrvvaLiSGGKDScynmm~cv~~gHeiVaLanl~p~~d~~delDSyMyQtVGh~~i~lyaecm~lPlyrr~i~g~s~nq~ 80 (277)
T KOG2316|consen 1 MRVVALISGGKDSCYNMMCCVRLGHEIVALANLHPKEDESDELDSYMYQTVGHDVIDLYAECMGLPLYRRRIRGRSINQK 80 (277)
T ss_pred CcEEEEEeCChHHHHHHHHHHHcCCeeeeeecccCCcccchhHHHHHHHhhhHHHHHHHHHHhcCceeeeeccCcccccc
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEE
Q 004613 81 LSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 81 ~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
++|..|++||+||||++|+.+|+++|.++||++|||+|+|||+||||||+||||.+++|||++||++||+||+.+|++||
T Consensus 81 l~Y~~t~~DEvEDLy~ll~~VK~~~p~~eaVS~GAIlS~YQr~RVEnVC~RL~L~~Ls~LW~rdQ~~LL~eMi~~g~~Ai 160 (277)
T KOG2316|consen 81 LQYTKTEGDEVEDLYELLKTVKEKIPDVEAVSVGAILSDYQRTRVENVCSRLGLVSLSYLWQRDQEELLQEMILSGLDAI 160 (277)
T ss_pred cccccCCCchHHHHHHHHHHHHhhCCCceeeehhhhHhHHHHHHHHHHHhhhCceeehHHHhccHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccccCccccchhHHHHHhhhhcCCccccCCceeEEEeecCCCCCcceeEEeeeeEEEcCCCCccceeEE
Q 004613 161 TVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVL 240 (742)
Q Consensus 161 ii~Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGEyeTlvlD~PlF~~~ri~i~~~~~~~~~~~~~~~~~~l 240 (742)
||||||.||+. +||||+|++|++.|.+|+++||+|+|||||||||||+|||+|+ |||++++++++.|++|.++|++++
T Consensus 161 iiKVAAigL~~-khLgksL~em~p~L~~l~~ky~vh~CGEGGEyET~vlDcPlF~-krivld~~evv~hs~~~~~~~~v~ 238 (277)
T KOG2316|consen 161 IIKVAAIGLGR-KHLGKSLDEMQPYLLKLNDKYGVHVCGEGGEYETFVLDCPLFK-KRIVLDEYEVVIHSADEVCPVGVL 238 (277)
T ss_pred EEEEeecccCh-hhhCcCHHHHHHHHHHhhhhhCceecCCCcceeEEEecccchh-heeeeeeeEEeecCccCccceeEE
Confidence 99999999995 7999999999999999999999999999999999999999999 499999999999999999999999
Q ss_pred EeeeeEEEeccc
Q 004613 241 HPLAFHLEYKAG 252 (742)
Q Consensus 241 ~~~~~~l~~k~~ 252 (742)
++.+.+|++|.-
T Consensus 239 ~~~k~~l~~k~~ 250 (277)
T KOG2316|consen 239 RFLKLHLEKKHV 250 (277)
T ss_pred eeeecccccccc
Confidence 999999999854
No 2
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=100.00 E-value=5.5e-67 Score=524.15 Aligned_cols=222 Identities=42% Similarity=0.646 Sum_probs=211.5
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
||++|||||||||+||+|+|++.||+|++|++++|++. ||||||++|++++.+||+|||||+++...+|.
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~-----dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~----- 70 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENG-----DSYMFHTPNLELAELQAEAMGIPLVTFDTSGE----- 70 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCC-----CeeeeeccchHHHHHHHHhcCCceEEEecCcc-----
Confidence 99999999999999999999999999999999999875 89999999999999999999999999988873
Q ss_pred ccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEE
Q 004613 81 LSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 81 ~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
+++|+|+|.++|+++ ++++|++|||+|+|||+|+|++|.++|+++++|||++||++||++|+++||+++
T Consensus 71 ------~e~eve~L~~~l~~l-----~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~ 139 (223)
T COG2102 71 ------EEREVEELKEALRRL-----KVDGIVAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAI 139 (223)
T ss_pred ------chhhHHHHHHHHHhC-----cccEEEEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEE
Confidence 478999999999999 489999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccccCccccc-hhHHHHHhhhhcCCccccCCceeEEEeecCCCCCcceeEEeeeeEEEcCCCCccceeE
Q 004613 161 TVKVAAMGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGV 239 (742)
Q Consensus 161 ii~Va~~gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeTlvlD~PlF~~~ri~i~~~~~~~~~~~~~~~~~~ 239 (742)
||+|+++||++ +||||+|++ +.+.|.+|+++||||||||||||||+|+|||+|+ +||++.+.++.|++ .+|+
T Consensus 140 Iv~Vsa~gL~~-~~lGr~i~~~~~e~l~~l~~~ygi~~~GEgGEfeT~VldaP~F~-~ri~~~~~~~~w~~-----~~g~ 212 (223)
T COG2102 140 IVAVSAEGLDE-SWLGRRIDREFLEELKSLNRRYGIHPAGEGGEFETLVLDAPLFK-KRIELVEYEKEWDG-----EWGY 212 (223)
T ss_pred EEEEeccCCCh-HHhCCccCHHHHHHHHHHHHhcCCCccCCCcceEEEEecccccc-ceeEEeeeeeEEEC-----cEeE
Confidence 99999999997 699999995 7899999999999999999999999999999999 49999999999996 3689
Q ss_pred EEeeeeEEEec
Q 004613 240 LHPLAFHLEYK 250 (742)
Q Consensus 240 l~~~~~~l~~k 250 (742)
+.+++++|++|
T Consensus 213 ~~i~~~~l~~~ 223 (223)
T COG2102 213 FEIKRAELVPK 223 (223)
T ss_pred EEEeeeEeccC
Confidence 99999998865
No 3
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=100.00 E-value=3.6e-65 Score=521.17 Aligned_cols=221 Identities=41% Similarity=0.680 Sum_probs=207.3
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
||+++||||||||+||+++|+++ |+|++|+|++|.+. +|||||+++++++++||+||||||+.++..+.
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~~~-~~v~~L~t~~~~~~-----~s~~~H~~~~~~~~~qA~algipl~~~~~~~~----- 69 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHALKE-HEVISLVNIMPENE-----ESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT----- 69 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHHHh-CeeEEEEEEecCCC-----CcccccccCHHHHHHHHHHcCCCeEEeecCCC-----
Confidence 99999999999999999999999 99999999999863 69999999999999999999999988765432
Q ss_pred ccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEE
Q 004613 81 LSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 81 ~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
.++|+++|+++|+++ ||++|+||||+|+|||+|+|++|+++||++++|||++||++||+||++.||+|+
T Consensus 70 ------~e~~~e~l~~~l~~~-----gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i~~G~~ai 138 (223)
T TIGR00290 70 ------EEDEVEELKGILHTL-----DVEAVVFGAIYSEYQKTRIERVCRELGLKSFAPLWHRDPEKLMEEFVEEKFEAR 138 (223)
T ss_pred ------ccHHHHHHHHHHHHc-----CCCEEEECCcccHHHHHHHHHHHHhcCCEEeccccCCCHHHHHHHHHHcCCeEE
Confidence 478999999999887 799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccccCccccc-hhHHHHHhhhhcCCccccCCceeEEEeecCCCCCcceeEEeeeeEEEcCCCCccceeE
Q 004613 161 TVKVAAMGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGV 239 (742)
Q Consensus 161 ii~Va~~gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeTlvlD~PlF~~~ri~i~~~~~~~~~~~~~~~~~~ 239 (742)
|++|++.||++ +||||+|++ +.+.|.+++++||+|||||||||||||+|||+|++ ||.+.+.+++|+.. .||
T Consensus 139 Iv~v~a~gL~~-~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGEyhT~V~d~PlF~~-~i~~~~~e~~~~~~-----~~~ 211 (223)
T TIGR00290 139 IIAVAAEGLDE-SWLGRRIDRKMIDELKKLNEKYGIHPAGEGGEFETLVLDAPIFKK-RLEVKEIEKYWDGR-----NGH 211 (223)
T ss_pred EEEEecCCCCh-HHcCCcccHHHHHHHHHHHhccCCCccCCCceEEEEEecCccccc-ceeeeeeEEEEeCC-----eEE
Confidence 99999999997 699999995 67788888899999999999999999999999995 99999999999953 489
Q ss_pred EEeeeeEEEec
Q 004613 240 LHPLAFHLEYK 250 (742)
Q Consensus 240 l~~~~~~l~~k 250 (742)
+.|++++|++|
T Consensus 212 ~~i~~~~l~~k 222 (223)
T TIGR00290 212 LGIKRAALVSK 222 (223)
T ss_pred EEEEEEEEeeC
Confidence 99999999987
No 4
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=100.00 E-value=1.6e-63 Score=509.15 Aligned_cols=221 Identities=38% Similarity=0.596 Sum_probs=205.9
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
||+++||||||||+||+++|+++ |+|++|+|++|.+. ||||||+++++++++||++|||||+.+.++|.
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~~-~~V~~L~~~~~~~~-----~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~----- 69 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE-HEVISLVGVFSENE-----ESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE----- 69 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHHc-CeeEEEEEEcCCCC-----CccccccCCHHHHHHHHHHcCCCeEEEEcCCc-----
Confidence 99999999999999999999999 99999999999863 69999999999999999999999999987753
Q ss_pred ccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEE
Q 004613 81 LSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 81 ~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
.++|+++|+++|+++ ||++|+||||+|+|||+|+|++|+++||++++|||++||++|+ +|++.||+|+
T Consensus 70 ------~e~~~~~l~~~l~~~-----gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l~-e~i~~Gf~ai 137 (222)
T TIGR00289 70 ------EEKEVEDLAGQLGEL-----DVEALCIGAIESNYQKSRIDKVCRELGLKSIAPLWHADPEKLM-YEVAEKFEVI 137 (222)
T ss_pred ------hhHHHHHHHHHHHHc-----CCCEEEECccccHHHHHHHHHHHHHcCCEEeccccCCCHHHHH-HHHHcCCeEE
Confidence 368899999888654 8999999999999999999999999999999999999999987 8999999999
Q ss_pred EEEEecCCCCCccccCccccc-hhHHHHHhhhhcCCccccCCceeEEEeecCCCCCcceeEEeeeeEEEcCCCCccceeE
Q 004613 161 TVKVAAMGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGV 239 (742)
Q Consensus 161 ii~Va~~gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeTlvlD~PlF~~~ri~i~~~~~~~~~~~~~~~~~~ 239 (742)
|++|++.||++ +||||+|++ +.+.|.+|+++||+|||||||||||||+|||+|++ ||.+.+.+++||+++ ||
T Consensus 138 Iv~v~~~gL~~-~~LGr~id~~~~~~L~~l~~~~gid~~GEgGEyhT~V~d~PlF~~-~i~i~~~e~~~~~~~-----g~ 210 (222)
T TIGR00289 138 IVSVSAMGLDE-SWLGRRIDKECIDDLKRLNEKYGIHLAFEGGEAETLVLDAPLFKK-RIEVDEIEKFWDGVR-----GY 210 (222)
T ss_pred EEEEccCCCCh-HHcCCccCHHHHHHHHHHHhhcCccccCCCceEEEEEEeccccCc-ceeeEEeEEEEeCCc-----eE
Confidence 99999999997 599999994 67788889999999999999999999999999995 999999999999644 79
Q ss_pred EEeeeeEEEecc
Q 004613 240 LHPLAFHLEYKA 251 (742)
Q Consensus 240 l~~~~~~l~~k~ 251 (742)
+.|+++.|++|+
T Consensus 211 ~~i~~~~l~~k~ 222 (222)
T TIGR00289 211 CLIKRASLVDKT 222 (222)
T ss_pred EEEeEEEEeeCC
Confidence 999999999884
No 5
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=100.00 E-value=4.9e-64 Score=512.44 Aligned_cols=217 Identities=43% Similarity=0.712 Sum_probs=172.9
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
||+++||||||||+||+++|+++ |+|++|+|++|++. ||||||+++++++++||+||||||+.+.++|.
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~-----~s~~~H~~~~~~~~~qA~algipl~~~~~~g~----- 69 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEE-----DSYMFHGVNIELIEAQAEALGIPLIEIPTSGD----- 69 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT--EEEEEEEEEESTT-----T-SSS-STTGTCHHHHHHHHT--EEEEEE--------
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh-CCccEEEEeccCCC-----CcccccccCHHHHHHHHHHCCCCEEEEEccCc-----
Confidence 99999999999999999999999 99999999999864 79999999999999999999999999998763
Q ss_pred ccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEE
Q 004613 81 LSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 81 ~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
+++|+++|.++|+++ +|++|+||||+|+|||.|+|++|+++||++++|||++||++||+||++.||+++
T Consensus 70 ------~~~~~~~l~~~l~~~-----~v~~vv~GdI~~~~~r~~~e~vc~~lGl~~~~PLW~~d~~~ll~e~i~~Gf~ai 138 (218)
T PF01902_consen 70 ------EEDYVEDLKEALKEL-----KVEAVVFGDIDSEYQRNWVERVCERLGLEAVFPLWGRDREELLREFIESGFEAI 138 (218)
T ss_dssp ------CCCHHHHHHHHHCTC-------SEEE--TTS-HHHHHHHHHHHHHCT-EEE-TTTT--HHHHHHHHHHTT-EEE
T ss_pred ------cchhhHHHHHHHHHc-----CCCEEEECcCCcHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHHHHHCCCeEE
Confidence 468899999998776 599999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccccCccccc-hhHHHHHhhhhcCCccccCCceeEEEeecCCCCCcceeEEeeeeEEEcCCCCccceeE
Q 004613 161 TVKVAAMGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGV 239 (742)
Q Consensus 161 ii~Va~~gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeTlvlD~PlF~~~ri~i~~~~~~~~~~~~~~~~~~ 239 (742)
||+|++.||++ +||||+|++ ..+.|.+++++||+|||||||||||||+|||+|++ ||.|+..++++++ ..+|
T Consensus 139 Iv~V~~~~L~~-~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GEfhT~V~dgPlF~~-~i~i~~~~~~~~~-----~~~~ 211 (218)
T PF01902_consen 139 IVKVDADGLDE-SFLGRELDRELIEELPELNKKYGVDPCGEGGEFHTFVVDGPLFKK-RIEIEEGEIVWDG-----DYGY 211 (218)
T ss_dssp EEEEESTT--G-GGTT-B--HHHHHHHHHHHHHH---TT-TTTTEEEEEEE-TT-SC-EEEEEEEEEEEET-----TEEE
T ss_pred EEEEeccCCCh-HHCCCCccHHHHHHHHHHHhhcCccccCCCeeEEEEEEEcccccc-eEEEEeeEEEEEC-----CEEE
Confidence 99999999997 699999994 67888888899999999999999999999999995 9999999999974 3589
Q ss_pred EEeeeeE
Q 004613 240 LHPLAFH 246 (742)
Q Consensus 240 l~~~~~~ 246 (742)
+.|++++
T Consensus 212 l~i~~~~ 218 (218)
T PF01902_consen 212 LDIELAR 218 (218)
T ss_dssp EEEEEEE
T ss_pred EEEEECC
Confidence 9988764
No 6
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=100.00 E-value=1.2e-54 Score=437.67 Aligned_cols=192 Identities=56% Similarity=0.908 Sum_probs=179.6
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
|++++|||||||++++++|.++||+|+||+++.|... +++|||+++.+.+++||++||||++.+.+++
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~-----~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~------- 68 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEG-----SSMMYHTVNHELLELQAEAMGIPLIRIEISG------- 68 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCC-----CcccccccCHHHHHHHHHHcCCcEEEEeCCC-------
Confidence 7899999999999999999999999999999988753 5789999999999999999999999998754
Q ss_pred cccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEEE
Q 004613 82 SYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAIT 161 (742)
Q Consensus 82 ~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~i 161 (742)
+.++|.++|+++|++++++ |+++|++|||+|+|||+|+|++|+++||++++|||++||++||+||++.||+++|
T Consensus 69 ----~~e~~~~~l~~~l~~~~~~--g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~ll~e~~~~g~~~~i 142 (194)
T cd01994 69 ----EEEDEVEDLKELLRKLKEE--GVDAVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQEELLREMIEAGFKAII 142 (194)
T ss_pred ----CchHHHHHHHHHHHHHHHc--CCCEEEECccccHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHHHHHcCCeEEE
Confidence 2478889999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCccccCccccchhHHH--HHhhhhcCCccccCCceeEEEeecCCCC
Q 004613 162 VKVAAMGLEPGKHLGKEIAFLDPYL--HKLKESYGINVCGEGGEYETLTLDCPLF 214 (742)
Q Consensus 162 i~Va~~gL~~~~~lG~~l~~~~~~l--~~l~~~~g~~~cGEgGEyeTlvlD~PlF 214 (742)
++|++.||++ +||||+|++ +++ .+++++||+|||||||||||||+|||+|
T Consensus 143 v~v~~~~L~~-~~lG~~~~~--~~~~~~~~~~~~g~~~~GE~GEyhT~V~d~P~f 194 (194)
T cd01994 143 IKVAAEGLDE-SWLGREIDE--MFIELLELNEKYGVDPCGEGGEYETLVLDGPLF 194 (194)
T ss_pred EEeccCCCCH-HHCCCCccH--hhHHHHHhhhhcCcCccCCCceeeEEEEcCCCC
Confidence 9999999997 699999995 333 5788899999999999999999999998
No 7
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=100.00 E-value=1.1e-53 Score=438.32 Aligned_cols=217 Identities=41% Similarity=0.661 Sum_probs=200.9
Q ss_pred EEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccc
Q 004613 4 VALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSY 83 (742)
Q Consensus 4 val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y 83 (742)
+++|||||||++++++|+++||+|++|+++.|.+. ||||||.+.++.++.||++||||++.+.+++.
T Consensus 1 ~vl~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~-----~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~-------- 67 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEEGHEVRCLITVVPENE-----ESYMFHTPNIELTRLQAEALGIPLVKIETSGE-------- 67 (218)
T ss_pred CeeecCcHHHHHHHHHHHHcCCEEEEEEEeccCCC-----CccccCCCCHHHHHHHHHHhCCCEEEEECCCC--------
Confidence 47999999999999999999999999999997752 68999999999999999999999999988652
Q ss_pred cCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEEEEE
Q 004613 84 RMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVK 163 (742)
Q Consensus 84 ~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ii~ 163 (742)
.++|.++|+.+|++++++ |+++|++|||+++||+.|+|++|+++|+++++|||++|+++|+++|++.||+++|++
T Consensus 68 ---~~~~~~~l~~~l~~~~~~--g~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~PLw~~~~~el~~~~~~~G~~~~i~~ 142 (218)
T TIGR03679 68 ---KEKEVEDLKGALKELKRE--GVEGIVTGAIASRYQKSRIERICEELGLKVFAPLWGRDQEEYLRELVERGFRFIIVS 142 (218)
T ss_pred ---ChHHHHHHHHHHHHHHHc--CCCEEEECCcccHhHHHHHHHHHHhCCCeEEeehhcCCHHHHHHHHHHCCCEEEEEE
Confidence 367889999999999987 999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCccccCccccc-hhHHHHHhhhhcCCccccCCceeEEEeecCCCCCcceeEEeeeeEEEcCCCCccceeEEEe
Q 004613 164 VAAMGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHP 242 (742)
Q Consensus 164 Va~~gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeTlvlD~PlF~~~ri~i~~~~~~~~~~~~~~~~~~l~~ 242 (742)
|++.||++ +||||++++ +.+.|.+++++||+|||||||||||||+|||+|++ ||.+.+.+++++.. .||+.|
T Consensus 143 v~~~~l~~-~~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE~hT~V~d~P~F~~-~i~~~~~~~~~~~~-----~~~~~i 215 (218)
T TIGR03679 143 VSAYGLDE-SWLGREIDEKYIEKLKALNKRYGINPAGEGGEYETLVLDAPLFKK-RIEIVEAEKKWSGG-----GGYLII 215 (218)
T ss_pred EecCCCCh-HHCCCccCHHHHHHHHHHHhhcCccccCCCceeeEEEEeccCCCC-ceEEEeeEEEEECC-----eEEEEE
Confidence 99999998 599999995 67788888999999999999999999999999995 99999999999953 388888
Q ss_pred eee
Q 004613 243 LAF 245 (742)
Q Consensus 243 ~~~ 245 (742)
+++
T Consensus 216 ~~~ 218 (218)
T TIGR03679 216 ERA 218 (218)
T ss_pred EeC
Confidence 763
No 8
>KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=5e-25 Score=207.42 Aligned_cols=126 Identities=36% Similarity=0.545 Sum_probs=118.8
Q ss_pred cccccccCCCCCCCCCCccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEE
Q 004613 422 VLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVY 501 (742)
Q Consensus 422 ~lhvqs~s~waP~~iGpYSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY 501 (742)
.+|+|++|+|||+++||||||+++++++|+|||||++|.+|.+..+++.+|++++|+|+.++++++|++.+.+ |+.++|
T Consensus 5 ~l~v~v~S~~Ap~~igPYsQa~~~~~~~~~SGqigl~P~s~~~~~gg~~~q~~q~l~n~~~il~~a~a~~~~~-V~~~i~ 83 (138)
T KOG2317|consen 5 VLHVQVISYWAPANIGPYSQATKANDVVFISGQIGLDPPSMKLVEGGIVDQTEQALLNLEEILKAAGASLDLV-VKVTIF 83 (138)
T ss_pred eeEEEEeeccCCCCcCChhHheeeCCEEEEeccccccCCCCCEeccchHHHHHHHHHHHHHHHHHhccCcccc-EEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred EecccchhhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 004613 502 CSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 565 (742)
Q Consensus 502 ~sd~~~~sd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA~v 565 (742)
+.| +.++..+|+.|..|| ....|+|.++.|..||++..+||++++..
T Consensus 84 l~d---~~~f~~vn~v~~k~~--------------~~~~pars~~~v~alp~~~~ie~~~i~~~ 130 (138)
T KOG2317|consen 84 LAD---IIDFAAVNKVYAKYF--------------PKPNPARSCVQVAALPLNGKIEIECIAAE 130 (138)
T ss_pred Eec---chhHHHHHHHHHHHc--------------CCCCcchhhHHHhhcCCCCceEEeeehhh
Confidence 999 778889999998887 45678899999999999999999998864
No 9
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.9e-23 Score=195.98 Aligned_cols=121 Identities=30% Similarity=0.370 Sum_probs=109.2
Q ss_pred CCCCCCCCCCccceeeeCCEEEEeecccCCCCCCcccC-CCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccc
Q 004613 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCN-GGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVA 507 (742)
Q Consensus 429 s~waP~~iGpYSqAv~~g~~vyISGQIpl~P~tm~l~~-~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~ 507 (742)
+..+|.+++||||++++|+++|+|||+|++| ++.+.. +|+++|++++|+|++++|+++|++++++ +++++|++|
T Consensus 9 ~~~~~~~~~~yS~av~~~~~vfvSGQi~~~~-~g~~v~~~d~~~Q~~~~l~ni~a~L~~aG~~~~~V-vk~~v~l~d--- 83 (130)
T COG0251 9 TPNAPAPIGPYSQAVVAGGLVFVSGQIPLDP-TGELVGGEDIEAQTRQALANIKAVLEAAGSTLDDV-VKVTVFLTD--- 83 (130)
T ss_pred CCCCCCCCCCccceEEECCEEEEeCcCCcCC-CCcccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEecC---
Confidence 3568889999999999999999999999999 566554 4999999999999999999999999998 999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEeeC
Q 004613 508 SSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTD 567 (742)
Q Consensus 508 ~sd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA~v~d 567 (742)
..++..+|+.|..||+ ..++|+|++|+|..||++++|||+++|.+++
T Consensus 84 ~~~f~~~n~v~~~~f~-------------~~~~PArs~V~v~~l~~~~~VEIeaiA~~~~ 130 (130)
T COG0251 84 MNDFAAMNEVYDEFFE-------------VGGYPARSAVGVALLPPDALVEIEAIAALPE 130 (130)
T ss_pred chHHHHHHHHHHHHhc-------------cCCCCceeEEEhhhCCCCCeEEEEEEEEecC
Confidence 6778899999999985 2358999999999999999999999998753
No 10
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=99.90 E-value=7.8e-23 Score=192.08 Aligned_cols=119 Identities=30% Similarity=0.396 Sum_probs=109.7
Q ss_pred cCCCCCCCCCCccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccc
Q 004613 428 ISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVA 507 (742)
Q Consensus 428 ~s~waP~~iGpYSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~ 507 (742)
.+.++|++.|+||||+++|+++|+|||+|++|.++.++++|+++|++++|+|+.++|+++|++++++ +++++|+++
T Consensus 5 ~~~~~~~~~~~ys~av~~g~~v~vSGq~~~~~~~g~~~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dv-v~~~vyv~~--- 80 (124)
T TIGR00004 5 STDKAPAAIGPYSQAVKVGNTLFVSGQIPLDPSTGELVGGDIAEQAEQVLENLKAILEAAGLSLDDV-VKTTVFLTD--- 80 (124)
T ss_pred cCCCCCCCCCCCcceEEECCEEEEeeeCCCcCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEeC---
Confidence 3578899999999999999999999999999988888778999999999999999999999999998 999999998
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEE
Q 004613 508 SSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILY 564 (742)
Q Consensus 508 ~sd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA~ 564 (742)
+.++..+++.|.+|| +..+|++++|+|+.||+|++|||+++|+
T Consensus 81 ~~~~~~~~~~~~~~f--------------~~~~Pa~t~v~v~~L~~~~~vEIe~vA~ 123 (124)
T TIGR00004 81 LNDFAEVNEVYGQYF--------------DEPYPARSAVQVAALPKGVLVEIEAIAV 123 (124)
T ss_pred hHHHHHHHHHHHHHc--------------CCCCCceEEEECccCCCCCEEEEEEEEE
Confidence 778888998888877 3467999999999999999999999996
No 11
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=99.89 E-value=1.9e-22 Score=191.04 Aligned_cols=122 Identities=23% Similarity=0.304 Sum_probs=109.9
Q ss_pred CCCCCCCCCCccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccch
Q 004613 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 508 (742)
Q Consensus 429 s~waP~~iGpYSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~~ 508 (742)
+.+.|.+.||||||+++|+++|+|||+|++|.++.+. +|+++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 7 ~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~~~~~~-~d~~~Q~~~~~~ni~~~L~aaG~~~~~V-vk~~vyl~d---~ 81 (129)
T PRK11401 7 TQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIP-ADVQDQARLSLENVKAIVVAAGLSVGDI-IKMTVFITD---L 81 (129)
T ss_pred CCCCCCCCCCccceEEECCEEEEcCcCCccCCCCccC-cCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcc---H
Confidence 4678889999999999999999999999999888874 7899999999999999999999999998 999999998 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEee
Q 004613 509 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVT 566 (742)
Q Consensus 509 sd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA~v~ 566 (742)
.++..+++.|.+||.+. ..++|+|++++|+.||++++|||+++|+++
T Consensus 82 ~~~~~~~~v~~~~f~~~-----------~~~~Part~v~v~~L~~~~~VEIe~~A~~~ 128 (129)
T PRK11401 82 NDFATINEVYKQFFDEH-----------QATYPTRSCVQVARLPKDVKLEIEAIAVRS 128 (129)
T ss_pred HHHHHHHHHHHHHhCCC-----------CCCCCceEEEEcccCCCCCeEEEEEEEEec
Confidence 88999999998888410 124799999999999999999999999864
No 12
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=99.89 E-value=2.1e-22 Score=188.50 Aligned_cols=119 Identities=33% Similarity=0.422 Sum_probs=105.4
Q ss_pred CCCCCCCCccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccchhh
Q 004613 431 WAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSE 510 (742)
Q Consensus 431 waP~~iGpYSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~~sd 510 (742)
.+|.|++|||||++.|+++|+|||+|.+|.++.+.++++++|++++|+|++++|+++|++++|+ +++++|+++ +.+
T Consensus 3 ~a~~p~~~Ys~av~~g~~v~isGq~~~d~~~~~~~~~~~~~Q~~~~l~ni~~~L~~~G~~~~dv-v~~~~yl~d---~~~ 78 (121)
T PF01042_consen 3 SAPEPIGPYSQAVRAGDTVFISGQVGIDPATGQVVPGDIEEQTRQALDNIERILAAAGASLDDV-VKVTVYLTD---MSD 78 (121)
T ss_dssp TSCCCSSSSBSEEEETTEEEEEEEESBCTTTSSBSSSSHHHHHHHHHHHHHHHHHHTTS-GGGE-EEEEEEESS---GGG
T ss_pred cCCCCCCCCCCEEEECCEEEEeeeCCcCCCCCcCCCCCHHHHHHHHHHhhhhhhhcCCCcceeE-eeeeehhhh---hhh
Confidence 4899999999999999999999999999988888789999999999999999999999999998 999999999 778
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 004613 511 RLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 565 (742)
Q Consensus 511 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA~v 565 (742)
+..+++.|.+||+.. ..+|++++++|+.|+++++|||+++|++
T Consensus 79 ~~~~~~v~~~~f~~~------------~~~Pa~t~v~v~~L~~~~~vEIe~~A~v 121 (121)
T PF01042_consen 79 FPAVNEVWKEFFPDH------------PHRPARTTVGVSALPPGALVEIEAIAVV 121 (121)
T ss_dssp HHHHHHHHHHHSTSS------------TS--EEEEEEESBSGGG-SEEEEEEEE-
T ss_pred hHHHHHHHHHHhccc------------CCCCcEEEEEeCcCCCCCcEEEEEEEEC
Confidence 889999999888521 1579999999999999999999999974
No 13
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=99.88 E-value=4e-22 Score=188.41 Aligned_cols=119 Identities=15% Similarity=0.243 Sum_probs=107.9
Q ss_pred CCCCCCCCCCccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccch
Q 004613 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 508 (742)
Q Consensus 429 s~waP~~iGpYSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~~ 508 (742)
+...|.+.+|||||+.+|+++|+|||+|.+|.+..+.++|+++|++++|+|++++|+++|++++++ +++++|++| +
T Consensus 8 ~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~g~~~~~~d~~~Q~~~~l~ni~~iL~~aG~~~~dv-v~~~iyl~d---~ 83 (127)
T TIGR03610 8 PAGTSKPLAPFVPGTLADGVVYVSGTLPFDKDNNVVHVGDAAAQTRHVLETIKSVIETAGGTMDDV-TFNHIFIRD---W 83 (127)
T ss_pred CCCCCCCCCCCCCeEEECCEEEEeccCCcCCCCCeeCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcC---H
Confidence 456777889999999999999999999999976666678999999999999999999999999998 999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEEe
Q 004613 509 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 565 (742)
Q Consensus 509 sd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA~v 565 (742)
+++..+++.|.+|| +..+|+|++++|..|+++++|||+++|++
T Consensus 84 ~~~~~~~~~~~~~f--------------~~~~Pa~t~v~v~l~~p~~lVEIe~vA~~ 126 (127)
T TIGR03610 84 ADYAAINEVYAEYF--------------PGEKPARYCIQCGLVKPDALVEIASVAHI 126 (127)
T ss_pred HHHHHHHHHHHHHc--------------CCCCCcEEEEEeccCCCCCEEEEEEEEEe
Confidence 89999999998887 34679999999987789999999999985
No 14
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.86 E-value=3.6e-21 Score=179.78 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=105.4
Q ss_pred CCCCCCCCCCccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccch
Q 004613 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 508 (742)
Q Consensus 429 s~waP~~iGpYSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~~ 508 (742)
+.|.|++.++|||++++|+++|+|||+|+++.++ +.++++++|++++|+|+.++|+++|++++++ +++++|+++ .
T Consensus 3 ~~~~~~~~~~ys~av~~g~~l~vSGq~~~d~~~~-~~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dV-vk~~vyl~d---~ 77 (119)
T cd06154 3 SGSPWEEQAGYSRAVRVGNWVFVSGTTGYDYDGM-VMPGDAYEQTRQCLEIIEAALAEAGASLEDV-VRTRMYVTD---I 77 (119)
T ss_pred CCCCcccccCcccEEEECCEEEEeCcCcCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC---H
Confidence 4677888899999999999999999999999865 4467999999999999999999999999998 999999998 6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCC-CCCCeEEEEEEE
Q 004613 509 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNL-PKSALVEIKPIL 563 (742)
Q Consensus 509 sd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~L-P~galVEIe~iA 563 (742)
.++..+++.|.+|| ++.+|+|++++|+.| +++++|||+++|
T Consensus 78 ~~~~~~~~~~~~~f--------------~~~~Part~v~v~~L~~~~~lVEIe~~A 119 (119)
T cd06154 78 ADFEAVGRAHGEVF--------------GDIRPAATMVVVSLLVDPEMLVEIEVTA 119 (119)
T ss_pred HHHHHHHHHHHHHc--------------CCCCCceEEEEecccCCCCcEEEEEEEC
Confidence 78888998888877 346899999999999 899999999986
No 15
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.86 E-value=5.6e-21 Score=177.36 Aligned_cols=111 Identities=23% Similarity=0.208 Sum_probs=99.7
Q ss_pred CccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcC-CCCcceeEEEEEEEecccchhhHHHHHH
Q 004613 438 PYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFN-CSISTSAIYFVVYCSTYVASSERLKIQE 516 (742)
Q Consensus 438 pYSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG-~sl~~v~V~~tvY~sd~~~~sd~~~v~~ 516 (742)
|||||+.+|+++|+|||+|.+|+++.+ ++|+++|++++|+|++++|+++| ++++++ +++++|++|..+..++..+++
T Consensus 2 ~ys~av~~g~~v~~SGq~g~d~~g~~~-~~d~~~Q~~~~~~Nl~~~L~~aG~~~~~dV-vk~tvyltd~~~~~~~~~~~~ 79 (114)
T cd06152 2 HYSQAVRIGDRIEISGQGGWDPDTGKI-PEDLEEEIDQAFDNVELALKAAGGKGWEQV-YKVNSYHVDIKNEEAFGLMVE 79 (114)
T ss_pred CCCCeEEECCEEEEeccCCcCCCCCcc-CcCHHHHHHHHHHHHHHHHHHhCCCCHHHE-EEEEEEEecCCcHHHHHHHHH
Confidence 799999999999999999999988777 67999999999999999999999 999998 999999999432367888888
Q ss_pred HHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCC-CCCeEEEEEEEE
Q 004613 517 KLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLP-KSALVEIKPILY 564 (742)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP-~galVEIe~iA~ 564 (742)
.|.+|| +.++|++++++|+.|+ ++++|||+++|+
T Consensus 80 ~~~~~f--------------~~~~Pa~t~v~V~~L~~p~~lVEIe~~A~ 114 (114)
T cd06152 80 NFKKWM--------------PNHQPIWTCVGVTALGLPGMRVEIEVDAI 114 (114)
T ss_pred HHHHHc--------------CCCCCCeEEEEeccCCCCCcEEEEEEEEC
Confidence 888776 4568999999999996 579999999984
No 16
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.85 E-value=1.3e-20 Score=175.97 Aligned_cols=118 Identities=31% Similarity=0.425 Sum_probs=99.3
Q ss_pred ccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccchhhHHHHHHHH
Q 004613 439 YSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKL 518 (742)
Q Consensus 439 YSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~~sd~~~v~~~~ 518 (742)
||||+.+|+++|+|||+|++|.++.+.++++++|++++|+|++++|+++|+ +++ +++++|++| +.++..+++.|
T Consensus 1 yS~av~~~~~i~vSGQ~g~d~~~~~~~~~~~~~Q~~qal~Ni~~vL~~aG~--~dV-vk~~iyl~d---~~~~~~~~~v~ 74 (118)
T cd06156 1 YSQAIVVPKVAYISGQIGLIPATMTLLEGGITLQAVLSLQHLERVAKAMNV--QWV-LAAVCYVTD---ESSVPIARSAW 74 (118)
T ss_pred CCceEEECCEEEEEeeCCccCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC--CCE-EEEEEEEcC---hHHHHHHHHHH
Confidence 899999999999999999999988887889999999999999999999999 898 999999998 78899999999
Q ss_pred HHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEE
Q 004613 519 DAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPIL 563 (742)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA 563 (742)
.+||..-......++. ...++|++++++|+.||++++|||++++
T Consensus 75 ~~~f~~~~~~~~~~~~-~~~~~P~~t~v~V~~L~~~~~VEie~i~ 118 (118)
T cd06156 75 SKYCSELDLEDESRNE-SDDVNPPLVIVVVPELPRGALVEWQGIA 118 (118)
T ss_pred HHHhcCcccccccccc-ccCCCCcEEEEEcccCCCCCeEEEEEeC
Confidence 9998520000000000 0125899999999999999999999874
No 17
>cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.83 E-value=3.2e-20 Score=178.74 Aligned_cols=118 Identities=17% Similarity=0.108 Sum_probs=98.4
Q ss_pred CCCCCCCCCCccceeeeCCEEEEeecccCCCCC----Cccc----CCCHHHHHHHHHHHHHHHHHHcCCCCc---ceeEE
Q 004613 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPT----MTLC----NGGPTVELEQALQNSEAVAKCFNCSIS---TSAIY 497 (742)
Q Consensus 429 s~waP~~iGpYSqAv~~g~~vyISGQIpl~P~t----m~l~----~~di~~Qa~~aLqnl~~VL~aaG~sl~---~v~V~ 497 (742)
++.+|.+.++||||+++|+++|+|||+|++|.+ +.+. .+++++|++++|+|+.++|+++|++++ ++ ++
T Consensus 6 ~~~~~~~~~~ys~av~~g~~l~vSGq~~~d~~~~~~~g~i~~~~~~~d~~~Qt~~~~~Ni~~vL~~aG~~~~~~~dV-vk 84 (142)
T cd02199 6 LPPAPAPVGNYVPAVRTGNLLYVSGQLPRVDGKLVYTGKVGADLSVEEGQEAARLCALNALAALKAALGDLDRVKRV-VR 84 (142)
T ss_pred CCCCCCCCCccceEEEECCEEEEeCcCCCCCCCccccCccccccChHHHHHHHHHHHHHHHHHHHHhcCChhhcCCE-EE
Confidence 467888999999999999999999999999863 2332 246789999999999999999999987 88 99
Q ss_pred EEEEEecccchhhHHHH-------HHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEE
Q 004613 498 FVVYCSTYVASSERLKI-------QEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPIL 563 (742)
Q Consensus 498 ~tvY~sd~~~~sd~~~v-------~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA 563 (742)
+++|++| +.++..+ ++.|.+||. +.++|+|++++|..||++++|||+++|
T Consensus 85 ~~vyl~d---~~~~~~~~~~~~~~~~v~~~~f~-------------~~~~Part~v~V~~L~~~~~VEIe~~A 141 (142)
T cd02199 85 LTGFVNS---APDFTEQPKVANGASDLLVEVFG-------------EAGRHARSAVGVASLPLNAAVEVEAIV 141 (142)
T ss_pred EEEEEec---hHHhhhchhhhHHHHHHHHHHcC-------------CCCCCceEEEEhhhCCCCCEEEEEEEE
Confidence 9999999 4455544 455555552 236899999999999999999999987
No 18
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.82 E-value=1.3e-19 Score=165.58 Aligned_cols=104 Identities=21% Similarity=0.162 Sum_probs=94.8
Q ss_pred CccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccchhhHHHHHHH
Q 004613 438 PYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEK 517 (742)
Q Consensus 438 pYSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~~sd~~~v~~~ 517 (742)
+||||+++|+++|+|||+|.++ ++|+++|++++|+|++++|+++|++++++ +++++|++| +.++..+++.
T Consensus 2 ~~s~av~~g~~v~iSGq~~~~~------~~~~~~Q~~~~~~nl~~~L~~~G~~~~dv-vk~~vyl~d---~~~~~~~~~~ 71 (105)
T cd06150 2 RMSQAVVHNGTVYLAGQVADDT------SADITGQTRQVLAKIDALLAEAGSDKSRI-LSATIWLAD---MADFAAMNAV 71 (105)
T ss_pred CcCCEEEECCEEEEeCcCCcCC------CCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEcc---HHHHHHHHHH
Confidence 7999999999999999999987 46899999999999999999999999998 999999998 7889999999
Q ss_pred HHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEE
Q 004613 518 LDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILY 564 (742)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA~ 564 (742)
|.+||. +..+|+++++++..++++++|||+++|.
T Consensus 72 ~~~~f~-------------~~~~Pa~t~v~~~l~~~~~lvEIe~~Aa 105 (105)
T cd06150 72 WDAWVP-------------PGHAPARACVEAKLADPGYLVEIVVTAA 105 (105)
T ss_pred HHHHcC-------------CCCCCCeEEEEecccCCCCEEEEEEEEC
Confidence 988873 2368999999987777899999999983
No 19
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.81 E-value=1.7e-19 Score=166.37 Aligned_cols=108 Identities=23% Similarity=0.270 Sum_probs=97.0
Q ss_pred CccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccchhhHHHHHHH
Q 004613 438 PYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEK 517 (742)
Q Consensus 438 pYSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~~sd~~~v~~~ 517 (742)
+||||+++|+++|+|||+|.++.+. + ++++++|++++|+|++++|+++|++++++ +++++|+++. ..++..+++.
T Consensus 2 ~ys~av~~g~~l~vSGq~~~d~~g~-~-~~d~~~Q~~~~~~ni~~~L~~aG~~~~dv-vk~~vyl~~~--~~~~~~~~~~ 76 (111)
T cd02198 2 GYSPAVRVGDTLFVSGQVGSDADGS-V-AEDFEAQFRLAFQNLGAVLEAAGCSFDDV-VELTTFHVDM--AAHLPAFAAV 76 (111)
T ss_pred CCcceEEECCEEEEecccCcCCCCC-c-CCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEecc--HHHHHHHHHH
Confidence 7999999999999999999998644 4 57999999999999999999999999998 9999999962 4688888888
Q ss_pred HHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCC-CCCeEEEEEEEE
Q 004613 518 LDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLP-KSALVEIKPILY 564 (742)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP-~galVEIe~iA~ 564 (742)
|.+|| ++++|++++++|..|| ++++|||+++|.
T Consensus 77 ~~~~f--------------~~~~Pa~t~v~V~~L~~~~~~vEIe~~A~ 110 (111)
T cd02198 77 KDEYF--------------KEPYPAWTAVGVAWLARPGLLVEIKVVAV 110 (111)
T ss_pred HHHHc--------------CCCCCceehhhhhhcCCCCcEEEEEEEEE
Confidence 88877 4567999999999997 589999999996
No 20
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.78 E-value=2.7e-18 Score=155.73 Aligned_cols=107 Identities=32% Similarity=0.389 Sum_probs=97.9
Q ss_pred ccceeeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccchhhHHHHHHHH
Q 004613 439 YSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKL 518 (742)
Q Consensus 439 YSqAv~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~~sd~~~v~~~~ 518 (742)
|||++.+|+++|+|||+|.+|.++ ..++++++|++++|+|++++|+++|++++++ +++++|+++ ++++..+++.|
T Consensus 1 ys~~~~~~~~~~~sGq~~~~~~~~-~~~~~~~~Q~~~~~~ni~~~L~~~g~~~~~i-v~~~~yv~~---~~~~~~~~~~~ 75 (107)
T cd00448 1 YSQAVRVGNLVFVSGQIPLDPDGE-LVPGDIEAQTRQALENLEAVLEAAGGSLDDV-VKVTVYLTD---MADFAAVNEVY 75 (107)
T ss_pred CCCeEEECCEEEEeccCCcCCCCc-ccCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEec---HHHHHHHHHHH
Confidence 899999999999999999999874 4468999999999999999999999999998 999999998 78899999999
Q ss_pred HHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEE
Q 004613 519 DAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPIL 563 (742)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA 563 (742)
.+||. ...+|+|++++|+.||++++|||+++|
T Consensus 76 ~~~~~-------------~~~~Pa~t~v~v~~l~~~~~VEie~~a 107 (107)
T cd00448 76 DEFFG-------------EGPPPARTAVGVAALPPGALVEIEAIA 107 (107)
T ss_pred HHHhC-------------CCCCCceEEEEeccCCCCCEEEEEEEC
Confidence 88874 236899999999999999999999975
No 21
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.76 E-value=8.6e-18 Score=156.04 Aligned_cols=105 Identities=23% Similarity=0.282 Sum_probs=91.5
Q ss_pred ccceeee----CCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC-----CcceeEEEEEEEecccchh
Q 004613 439 YSQATLH----KEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCS-----ISTSAIYFVVYCSTYVASS 509 (742)
Q Consensus 439 YSqAv~~----g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~s-----l~~v~V~~tvY~sd~~~~s 509 (742)
||||+.+ |+++|+|||+|++|.+ .+.++|+++|++++|+||+++|+++|++ ++++ +++++|++| +.
T Consensus 1 ~s~a~~~~~~~g~~v~vSGq~~~d~~g-~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~~~~~~dV-vk~~vyl~d---~~ 75 (114)
T cd06153 1 FSRATLLAAGGRTHLFISGTASIVGHG-TVHPGDVEAQTRETLENIEALLEAAGRGGGAQFLADL-LRLKVYLRD---RE 75 (114)
T ss_pred CCCceeeccCCCcEEEEEeECcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCccchhhe-eEEEEEEcc---HH
Confidence 8999988 8899999999999965 4457899999999999999999999999 9998 999999998 78
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEE
Q 004613 510 ERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPIL 563 (742)
Q Consensus 510 d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA 563 (742)
++..+++.|.+||. +.+| ++++.+.-++++++|||+++|
T Consensus 76 ~~~~~~~v~~~~f~--------------~~~P-~t~~~~~l~~p~~lvEIe~~A 114 (114)
T cd06153 76 DLPAVRAILAARLG--------------PAVP-AVFLQADVCRPDLLVEIEAVA 114 (114)
T ss_pred HHHHHHHHHHHHcC--------------CCCC-EEEEEeeecCCCcEEEEEEEC
Confidence 89999999988873 3456 477766555789999999986
No 22
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.71 E-value=9.4e-17 Score=151.57 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=92.1
Q ss_pred ccceeeeC---CEEEEeecccCCCCCC----cc-cCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccc---
Q 004613 439 YSQATLHK---EVLQMAGQLGLDPPTM----TL-CNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVA--- 507 (742)
Q Consensus 439 YSqAv~~g---~~vyISGQIpl~P~tm----~l-~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~--- 507 (742)
|||++.+. +++|+|||+|.++... .. ..+++++|++++|+|++++|+++|++++++ +++++|+++...
T Consensus 1 ~s~~~~v~~~~~~i~vSGq~~~~~d~~~~~g~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~dV-vk~~vyl~~~~~~~~ 79 (126)
T cd06151 1 IAQAVEVPAGAATIYLSGTVPAVVNASAPKGSPARYGDTETQTISVLKRIETILQSQGLTMGDV-VKMRVFLVADPALDG 79 (126)
T ss_pred CCceEEeCCCceEEEEeccCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEEecCccccc
Confidence 89999886 6999999999865431 12 247899999999999999999999999998 999999985322
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCC-CCCeEEEEEEE
Q 004613 508 SSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLP-KSALVEIKPIL 563 (742)
Q Consensus 508 ~sd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP-~galVEIe~iA 563 (742)
..++..+++.|.+||... ..+++|++++++|++|+ ++++|||+++|
T Consensus 80 ~~~~~~~~~~~~~~f~~~----------~~~~~Pa~t~v~V~~L~~p~~~VEIe~iA 126 (126)
T cd06151 80 KMDFAGFMKAYRQFFGTA----------EQPNKPARSTLQVAGLVNPGWLVEIEVVA 126 (126)
T ss_pred hhhHHHHHHHHHHHhccc----------cCCCCCceEEEEeeecCCCCcEEEEEEEC
Confidence 236788888888887411 01157999999999997 48999999986
No 23
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.71 E-value=8e-17 Score=146.30 Aligned_cols=98 Identities=14% Similarity=0.207 Sum_probs=88.2
Q ss_pred eeeCCEEEEeecccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeEEEEEEEecccchhhHHHHHHHHHHHH
Q 004613 443 TLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKLDAFL 522 (742)
Q Consensus 443 v~~g~~vyISGQIpl~P~tm~l~~~di~~Qa~~aLqnl~~VL~aaG~sl~~v~V~~tvY~sd~~~~sd~~~v~~~~~~~~ 522 (742)
.+.|+++|+|||+|.+| ++++++|++++|+|++++|+++|++++|+ +++++|++| ++++..+++.|.+||
T Consensus 4 ~~~g~~v~vSG~~~~~~------~~d~~~Q~~~v~~ni~~~L~~aG~~~~dV-v~~~iyl~d---~~~~~~~n~~~~~~f 73 (101)
T cd06155 4 NRTGGLLWISNVTASES------DETVEEQMESIFSKLREILQSNGLSLSDI-LYVTLYLRD---MSDFAEVNSVYGTFF 73 (101)
T ss_pred EEECCEEEEecCCCCCC------CCCHHHHHHHHHHHHHHHHHHcCCCHHHE-EEEEEEECC---HHHHHHHHHHHHHHc
Confidence 45799999999999987 46899999999999999999999999998 999999998 789999999998887
Q ss_pred HHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEE
Q 004613 523 KQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILY 564 (742)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA~ 564 (742)
. +..+|+|+++++ .|+++++|||+++|+
T Consensus 74 ~-------------~~~~Par~~v~~-~l~~~~lvEIe~vA~ 101 (101)
T cd06155 74 D-------------KPNPPSRVCVEC-GLPEGCDVQLSCVAA 101 (101)
T ss_pred C-------------CCCCCceEEEEe-ccCCCCEEEEEEEEC
Confidence 3 346899999998 577899999999984
No 24
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.62 E-value=2.6e-15 Score=136.44 Aligned_cols=80 Identities=24% Similarity=0.480 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 408 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~~~~~ 408 (742)
++++++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||+++. ||+|+++++.++ .+ ..+
T Consensus 21 ~~d~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~~~~----~Par~~v~~~l~-~~-~lv 94 (101)
T cd06155 21 DETVEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFDKPN----PPSRVCVECGLP-EG-CDV 94 (101)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCCC----CCceEEEEeccC-CC-CEE
Confidence 469999999999999999999999999999999999999999999999999998643 799999998655 34 467
Q ss_pred EEEeee
Q 004613 409 YIEVLV 414 (742)
Q Consensus 409 ~ieV~a 414 (742)
+|++++
T Consensus 95 EIe~vA 100 (101)
T cd06155 95 QLSCVA 100 (101)
T ss_pred EEEEEE
Confidence 888765
No 25
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.61 E-value=3.2e-15 Score=136.67 Aligned_cols=81 Identities=27% Similarity=0.420 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 408 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~~~~~ 408 (742)
++|+++|++++|+||+++|+++|++++||+++++|++||++|+.+|++|.+||++.. ||+|+||+++++.++ .++
T Consensus 24 ~~~~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~~~f~~~~----~Pa~t~v~~~l~~~~-~lv 98 (105)
T cd06150 24 SADITGQTRQVLAKIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDAWVPPGH----APARACVEAKLADPG-YLV 98 (105)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHcCCCC----CCCeEEEEecccCCC-CEE
Confidence 479999999999999999999999999999999999999999999999999998632 699999998776554 467
Q ss_pred EEEeee
Q 004613 409 YIEVLV 414 (742)
Q Consensus 409 ~ieV~a 414 (742)
+||+++
T Consensus 99 EIe~~A 104 (105)
T cd06150 99 EIVVTA 104 (105)
T ss_pred EEEEEE
Confidence 888765
No 26
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.58 E-value=1.2e-14 Score=135.07 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcC-CCcccEEEEEEEecCc---ccHHHHHHHHHHhcCCCCCCCCCCcceEEeccccccc
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYG-FDWGHVLYIHLYISDM---NEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVG 404 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G-~sl~dVv~vtlyL~Dm---~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~ 404 (742)
++|+++|++++|+||+++|+++| ++++||+++++|++|| ++|+.+|++|.+||+.+ +|+|+|++|+.|..+
T Consensus 29 ~~d~~~Q~~~~~~Nl~~~L~~aG~~~~~dVvk~tvyltd~~~~~~~~~~~~~~~~~f~~~-----~Pa~t~v~V~~L~~p 103 (114)
T cd06152 29 PEDLEEEIDQAFDNVELALKAAGGKGWEQVYKVNSYHVDIKNEEAFGLMVENFKKWMPNH-----QPIWTCVGVTALGLP 103 (114)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhCCCCHHHEEEEEEEEecCCcHHHHHHHHHHHHHHcCCC-----CCCeEEEEeccCCCC
Confidence 56899999999999999999999 9999999999999999 79999999999999876 499999999988755
Q ss_pred cceeEEEeee
Q 004613 405 LGKAYIEVLV 414 (742)
Q Consensus 405 ~~~~~ieV~a 414 (742)
-.+++||+.+
T Consensus 104 ~~lVEIe~~A 113 (114)
T cd06152 104 GMRVEIEVDA 113 (114)
T ss_pred CcEEEEEEEE
Confidence 5568888764
No 27
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.6e-14 Score=137.27 Aligned_cols=83 Identities=29% Similarity=0.446 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 408 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~~~~~ 408 (742)
.+++++|++++|+||+++|+++|.+++||+++++||+||++|+.+|++|.+||+.. ++|||+||++..|+.+. .+
T Consensus 46 ~~d~~~Q~~~~l~ni~a~L~~aG~~~~~Vvk~~v~l~d~~~f~~~n~v~~~~f~~~----~~PArs~V~v~~l~~~~-~V 120 (130)
T COG0251 46 GEDIEAQTRQALANIKAVLEAAGSTLDDVVKVTVFLTDMNDFAAMNEVYDEFFEVG----GYPARSAVGVALLPPDA-LV 120 (130)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCchHHHHHHHHHHHHhccC----CCCceeEEEhhhCCCCC-eE
Confidence 45999999999999999999999999999999999999999999999999999874 37999999999998654 58
Q ss_pred EEEeeeec
Q 004613 409 YIEVLVAN 416 (742)
Q Consensus 409 ~ieV~a~~ 416 (742)
+||+++..
T Consensus 121 EIeaiA~~ 128 (130)
T COG0251 121 EIEAIAAL 128 (130)
T ss_pred EEEEEEEe
Confidence 88887654
No 28
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=99.56 E-value=1.4e-14 Score=137.17 Aligned_cols=81 Identities=25% Similarity=0.371 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 408 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~~~~~ 408 (742)
++|+++|++++|+||+++|+++|++++||+++++|++||++|+.+|++|.+||+.+ +|+|+||++.++..+ .++
T Consensus 45 ~~d~~~Q~~~~l~ni~~iL~~aG~~~~dvv~~~iyl~d~~~~~~~~~~~~~~f~~~-----~Pa~t~v~v~l~~p~-~lV 118 (127)
T TIGR03610 45 VGDAAAQTRHVLETIKSVIETAGGTMDDVTFNHIFIRDWADYAAINEVYAEYFPGE-----KPARYCIQCGLVKPD-ALV 118 (127)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCC-----CCcEEEEEeccCCCC-CEE
Confidence 46899999999999999999999999999999999999999999999999999865 599999999777655 468
Q ss_pred EEEeeee
Q 004613 409 YIEVLVA 415 (742)
Q Consensus 409 ~ieV~a~ 415 (742)
+||+++.
T Consensus 119 EIe~vA~ 125 (127)
T TIGR03610 119 EIASVAH 125 (127)
T ss_pred EEEEEEE
Confidence 8888764
No 29
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=99.53 E-value=6.2e-14 Score=132.95 Aligned_cols=84 Identities=27% Similarity=0.523 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 408 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~~~~~ 408 (742)
++|+++|++++|+||+++|+++|++++||+++++||+||++|+.+|++|.+||++++ +.+|+|++|+++.|+.+ ..+
T Consensus 43 ~~d~~~Q~~~~~~ni~~~L~aaG~~~~~Vvk~~vyl~d~~~~~~~~~v~~~~f~~~~--~~~Part~v~v~~L~~~-~~V 119 (129)
T PRK11401 43 PADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQ--ATYPTRSCVQVARLPKD-VKL 119 (129)
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHhCCCC--CCCCceEEEEcccCCCC-CeE
Confidence 468999999999999999999999999999999999999999999999999998742 13699999999999754 468
Q ss_pred EEEeeee
Q 004613 409 YIEVLVA 415 (742)
Q Consensus 409 ~ieV~a~ 415 (742)
+||+++.
T Consensus 120 EIe~~A~ 126 (129)
T PRK11401 120 EIEAIAV 126 (129)
T ss_pred EEEEEEE
Confidence 8888764
No 30
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.52 E-value=8.2e-14 Score=130.23 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccc-ccccce
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLL-EVGLGK 407 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L-~~~~~~ 407 (742)
++++++|++++|+||+++|+++|++++||+++++|++|+++|+.+|++|.+||+.+ +|+|++++++.| +.+ ..
T Consensus 39 ~~d~~~Q~~~~~~ni~~~L~~aG~~~~dVvk~~vyl~d~~~~~~~~~~~~~~f~~~-----~Part~v~v~~L~~~~-~l 112 (119)
T cd06154 39 PGDAYEQTRQCLEIIEAALAEAGASLEDVVRTRMYVTDIADFEAVGRAHGEVFGDI-----RPAATMVVVSLLVDPE-ML 112 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCC-----CCceEEEEecccCCCC-cE
Confidence 56999999999999999999999999999999999999999999999999999875 599999999998 544 46
Q ss_pred eEEEee
Q 004613 408 AYIEVL 413 (742)
Q Consensus 408 ~~ieV~ 413 (742)
++||+.
T Consensus 113 VEIe~~ 118 (119)
T cd06154 113 VEIEVT 118 (119)
T ss_pred EEEEEE
Confidence 788765
No 31
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.49 E-value=1.2e-13 Score=127.47 Aligned_cols=82 Identities=11% Similarity=0.189 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecC-cccHHHHHHHHHHhcCCCCCCCCCCcceEEeccccccccce
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISD-MNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGK 407 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~D-m~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~~~~ 407 (742)
++|+++|++++|+||+++|+++|++++||+++++|++| +++|+.+|++|.+||+.+ +|+|++++|..|+.+-..
T Consensus 28 ~~d~~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~~~-----~Pa~t~v~V~~L~~~~~~ 102 (111)
T cd02198 28 AEDFEAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFKEP-----YPAWTAVGVAWLARPGLL 102 (111)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcCCC-----CCceehhhhhhcCCCCcE
Confidence 57899999999999999999999999999999999996 589999999999999865 599999999988765556
Q ss_pred eEEEeeee
Q 004613 408 AYIEVLVA 415 (742)
Q Consensus 408 ~~ieV~a~ 415 (742)
++||+++.
T Consensus 103 vEIe~~A~ 110 (111)
T cd02198 103 VEIKVVAV 110 (111)
T ss_pred EEEEEEEE
Confidence 88888753
No 32
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=99.49 E-value=1.6e-13 Score=128.58 Aligned_cols=83 Identities=24% Similarity=0.417 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 408 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~~~~~ 408 (742)
++++++|++++|+||+++|+++|++++||+++++|++||++|+.+|++|.+||+... .+|+|++|+++.|+ +...+
T Consensus 38 ~~~~~~Q~~~~l~ni~~~L~~~G~~~~dvv~~~~yl~d~~~~~~~~~v~~~~f~~~~---~~Pa~t~v~v~~L~-~~~~v 113 (121)
T PF01042_consen 38 PGDIEEQTRQALDNIERILAAAGASLDDVVKVTVYLTDMSDFPAVNEVWKEFFPDHP---HRPARTTVGVSALP-PGALV 113 (121)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTTS-GGGEEEEEEEESSGGGHHHHHHHHHHHSTSST---S--EEEEEEESBSG-GG-SE
T ss_pred CCCHHHHHHHHHHhhhhhhhcCCCcceeEeeeeehhhhhhhhHHHHHHHHHHhcccC---CCCcEEEEEeCcCC-CCCcE
Confidence 689999999999999999999999999999999999999999999999999999872 47999999999998 44467
Q ss_pred EEEeeee
Q 004613 409 YIEVLVA 415 (742)
Q Consensus 409 ~ieV~a~ 415 (742)
+||+++.
T Consensus 114 EIe~~A~ 120 (121)
T PF01042_consen 114 EIEAIAV 120 (121)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8887653
No 33
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=99.46 E-value=2.7e-13 Score=127.41 Aligned_cols=80 Identities=24% Similarity=0.461 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEeccccccccceeE
Q 004613 330 AGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKAY 409 (742)
Q Consensus 330 ~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~~~~~~ 409 (742)
+|+++|++++|+||+++|+++|++++||+++++|++||++|+.+|++|.+||+.+ +|+|++|++..|+.+ ..++
T Consensus 44 ~d~~~Q~~~~~~ni~~~L~~aG~~~~dvv~~~vyv~~~~~~~~~~~~~~~~f~~~-----~Pa~t~v~v~~L~~~-~~vE 117 (124)
T TIGR00004 44 GDIAEQAEQVLENLKAILEAAGLSLDDVVKTTVFLTDLNDFAEVNEVYGQYFDEP-----YPARSAVQVAALPKG-VLVE 117 (124)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeChHHHHHHHHHHHHHcCCC-----CCceEEEECccCCCC-CEEE
Confidence 6899999999999999999999999999999999999999999999999999865 599999999998754 4678
Q ss_pred EEeeee
Q 004613 410 IEVLVA 415 (742)
Q Consensus 410 ieV~a~ 415 (742)
||+++.
T Consensus 118 Ie~vA~ 123 (124)
T TIGR00004 118 IEAIAV 123 (124)
T ss_pred EEEEEE
Confidence 887753
No 34
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.42 E-value=9.1e-13 Score=119.45 Aligned_cols=80 Identities=26% Similarity=0.447 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 408 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~~~~~ 408 (742)
++++++|++++|+||+++|+++|++++||+++++|++||++|+.+|++|.+||+.. ++|+|++|+++.|+.+ ..+
T Consensus 27 ~~~~~~Q~~~~~~ni~~~L~~~g~~~~~iv~~~~yv~~~~~~~~~~~~~~~~~~~~----~~Pa~t~v~v~~l~~~-~~V 101 (107)
T cd00448 27 PGDIEAQTRQALENLEAVLEAAGGSLDDVVKVTVYLTDMADFAAVNEVYDEFFGEG----PPPARTAVGVAALPPG-ALV 101 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecHHHHHHHHHHHHHHhCCC----CCCceEEEEeccCCCC-CEE
Confidence 57999999999999999999999999999999999999999999999999999873 3799999999999544 357
Q ss_pred EEEee
Q 004613 409 YIEVL 413 (742)
Q Consensus 409 ~ieV~ 413 (742)
++|++
T Consensus 102 Eie~~ 106 (107)
T cd00448 102 EIEAI 106 (107)
T ss_pred EEEEE
Confidence 77765
No 35
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.42 E-value=1.3e-12 Score=145.02 Aligned_cols=166 Identities=17% Similarity=0.112 Sum_probs=127.2
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCC-CeEEEecCCCcccc-
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGL-PLFRRRIHGSTRHQ- 79 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algi-Pl~~~~i~g~~~~~- 79 (742)
|+++.+|||+||++.++.+.+.|++|+|+.--.+.. .--.+.++..|+.+|+ |++.++++....+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g~~V~av~id~Gq~------------~~e~~~a~~~a~~lGi~~~~viD~~~ef~~~~ 68 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQP------------EEDIDAIPEKALEYGAENHYTIDAREEFVKDY 68 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEEEecCCC------------hHHHHHHHHHHHHhCCCeEEEEeCHHHHHHhh
Confidence 689999999999999999999999998884432210 1124558889999998 79888876433111
Q ss_pred -------cccccC----CCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHh--hcCCeEeeec--cccC
Q 004613 80 -------KLSYRM----TPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCS--RLGLVSLAYL--WKQD 144 (742)
Q Consensus 80 -------~~~Y~~----~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~--rlgl~~l~pL--W~~d 144 (742)
+.-|.+ ...-.--.+++.|.++.++. |+++|+.|+..+.+++.|.++.+. ..++..++|| |+.+
T Consensus 69 ~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~-G~~~Ia~G~t~~gnDqvrf~r~~~~~~~~l~viaPLrew~l~ 147 (394)
T TIGR00032 69 GFAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKE-GANAVAHGCTGKGNDQERFERSIRLLNPDLKVIAPWRDLNFT 147 (394)
T ss_pred chhhhcCCccccCcccccchhhHHHHHHHHHHHHHHc-CCCEEEECccCCcchHHHHHHHHHHhCCCCeEECchhhcCCC
Confidence 222321 11112235666777777776 999999999998776666777666 6789999999 9999
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCCccccCccccc
Q 004613 145 QSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAF 181 (742)
Q Consensus 145 ~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~~ 181 (742)
++++++.+.+.|+++.++++++.++|+ .|+|++++.
T Consensus 148 r~ei~~ya~~~Gip~~~~~~~pys~d~-nl~G~s~e~ 183 (394)
T TIGR00032 148 REEEIEYAIQCGIPYPMSKEKPYSIDE-NLWGRSIEA 183 (394)
T ss_pred HHHHHHHHHHcCCCeeEecCCCCcCCH-HHcCcEecc
Confidence 999999999999999999999999997 699999983
No 36
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.41 E-value=1.2e-12 Score=121.58 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCC-----cccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccc
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFD-----WGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEV 403 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~s-----l~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~ 403 (742)
++|+++|++++|+||+.+|+++|++ ++||+++++|++||++|+.+|++|.+||+.+ ||+ +++.+.++..
T Consensus 31 ~~d~~~Q~~~~l~ni~~~L~~aG~~~~~~~~~dVvk~~vyl~d~~~~~~~~~v~~~~f~~~-----~P~-t~~~~~l~~p 104 (114)
T cd06153 31 PGDVEAQTRETLENIEALLEAAGRGGGAQFLADLLRLKVYLRDREDLPAVRAILAARLGPA-----VPA-VFLQADVCRP 104 (114)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCccchhheeEEEEEEccHHHHHHHHHHHHHHcCCC-----CCE-EEEEeeecCC
Confidence 5699999999999999999999999 9999999999999999999999999999864 464 7776655544
Q ss_pred ccceeEEEee
Q 004613 404 GLGKAYIEVL 413 (742)
Q Consensus 404 ~~~~~~ieV~ 413 (742)
+ .+++||+.
T Consensus 105 ~-~lvEIe~~ 113 (114)
T cd06153 105 D-LLVEIEAV 113 (114)
T ss_pred C-cEEEEEEE
Confidence 4 45777765
No 37
>PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D.
Probab=99.41 E-value=1.5e-12 Score=125.01 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=89.5
Q ss_pred CCCCCCCCCccceeeeCCEEEEeecccCCCCCCcc---cCCCH-----HHHHHHHHHHHHHHHHHcCCCCcce--eEEEE
Q 004613 430 CWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTL---CNGGP-----TVELEQALQNSEAVAKCFNCSISTS--AIYFV 499 (742)
Q Consensus 430 ~waP~~iGpYSqAv~~g~~vyISGQIpl~P~tm~l---~~~di-----~~Qa~~aLqnl~~VL~aaG~sl~~v--~V~~t 499 (742)
+-.|.|.|.|.+++++|+++|+|||+|.+.+...+ .+.++ .+-+++|.-|+-+.++.+-.+++.+ +++++
T Consensus 12 P~~~~p~g~Y~p~~~~G~ll~vSGq~p~~~g~~~~~G~vG~~~s~e~g~~AAr~~~Ln~La~lk~~~G~LdrV~~ivkl~ 91 (148)
T PF14588_consen 12 PEPPAPVGNYVPAVRVGNLLYVSGQLPRDDGKLLYTGKVGEDLSVEEGYEAARLCALNALAALKAALGDLDRVKRIVKLT 91 (148)
T ss_dssp ------SSSC-SEEEETTEEEEEEE--EETTEE-SBS-BTTTB-HHHHHHHHHHHHHHHHHHHHHHCTSGGGECEEEEEE
T ss_pred CCCCCCCceeeeEEEECCEEEEeccCcccCCEEeeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHhHEeEEEEEE
Confidence 45678899999999999999999999998653222 12232 2446677777777777776788887 79999
Q ss_pred EEEecccchhhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCeEEEEEcCCCCCCCeEEEEEEEE
Q 004613 500 VYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILY 564 (742)
Q Consensus 500 vY~sd~~~~sd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Part~V~V~~LP~galVEIe~iA~ 564 (742)
.|+...+++.+...|.+..+++|-++ |++...++|+.++|.+||.|+.|||++++.
T Consensus 92 g~V~s~~~F~~~p~V~ngaSdll~~v---------fGe~G~HaRsAvGv~sLP~~a~VEie~i~e 147 (148)
T PF14588_consen 92 GFVNSTPDFTEHPAVANGASDLLVEV---------FGEAGRHARSAVGVASLPLNAPVEIELIAE 147 (148)
T ss_dssp EEEEB-TT---HHHHHHHHHHHHHHH---------HGGGG-BEEEEEEESC-GGGBSEEEEEEEE
T ss_pred EEEecCCCcccCchhhhhHHHHHHHH---------hCcCCCCcccccccccCCCCCeEEEEEEEE
Confidence 99999999999999988888888654 456678999999999999999999999985
No 38
>cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.40 E-value=7.3e-13 Score=127.77 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcc---cEEEEEEEecCcccHHHH-------HHHHHHhcCCCCCCCCCCcceEEecc
Q 004613 330 AGLLDDLRVVLKQIESKLVRYGFDWG---HVLYIHLYISDMNEFAVA-------NETYVKFITHEKCPCGVPSRSTIELP 399 (742)
Q Consensus 330 ~~i~eQt~~il~nL~~~L~~~G~sl~---dVv~vtlyL~Dm~df~~v-------N~vY~~~F~~~~~p~~pPARt~V~v~ 399 (742)
+++++|++++|+||+.+|+++|++++ ||+++++|++||++|+.+ |++|.+||+... +|||+||++.
T Consensus 52 ~d~~~Qt~~~~~Ni~~vL~~aG~~~~~~~dVvk~~vyl~d~~~~~~~~~~~~~~~~v~~~~f~~~~----~Part~v~V~ 127 (142)
T cd02199 52 EEGQEAARLCALNALAALKAALGDLDRVKRVVRLTGFVNSAPDFTEQPKVANGASDLLVEVFGEAG----RHARSAVGVA 127 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCEEEEEEEEechHHhhhchhhhHHHHHHHHHHcCCCC----CCceEEEEhh
Confidence 47899999999999999999999988 999999999999999875 889999998532 6999999999
Q ss_pred ccccccceeEEEeee
Q 004613 400 LLEVGLGKAYIEVLV 414 (742)
Q Consensus 400 ~L~~~~~~~~ieV~a 414 (742)
.|+.+ ..++||+++
T Consensus 128 ~L~~~-~~VEIe~~A 141 (142)
T cd02199 128 SLPLN-AAVEVEAIV 141 (142)
T ss_pred hCCCC-CEEEEEEEE
Confidence 98766 467888764
No 39
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.40 E-value=1.1e-12 Score=123.86 Aligned_cols=84 Identities=26% Similarity=0.307 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEec-Ccc-----cHHHHHHHHHHhcCCCCCCCCCCcceEEeccccc
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYIS-DMN-----EFAVANETYVKFITHEKCPCGVPSRSTIELPLLE 402 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~-Dm~-----df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~ 402 (742)
.+++++|++++|+||+++|+++|++++||+++++|++ |++ +|+.+|++|.+||+... +|++|+|++|+++.|+
T Consensus 36 ~~d~~~Q~~~~l~ni~~~L~~aG~~~~dVvk~~vyl~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~Pa~t~v~V~~L~ 114 (126)
T cd06151 36 YGDTETQTISVLKRIETILQSQGLTMGDVVKMRVFLVADPALDGKMDFAGFMKAYRQFFGTAE-QPNKPARSTLQVAGLV 114 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecCccccchhhHHHHHHHHHHHhcccc-CCCCCceEEEEeeecC
Confidence 3699999999999999999999999999999999997 666 99999999999998741 1236999999999887
Q ss_pred cccceeEEEee
Q 004613 403 VGLGKAYIEVL 413 (742)
Q Consensus 403 ~~~~~~~ieV~ 413 (742)
..-..++||++
T Consensus 115 ~p~~~VEIe~i 125 (126)
T cd06151 115 NPGWLVEIEVV 125 (126)
T ss_pred CCCcEEEEEEE
Confidence 65456788765
No 40
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.39 E-value=1.6e-12 Score=121.61 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCC--------CCCCCCcceEEeccc
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEK--------CPCGVPSRSTIELPL 400 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~--------~p~~pPARt~V~v~~ 400 (742)
++++++|++++|+||+++|+++|+ +||+++++|++|+++|+.+|++|.+||+.+. -...+|+|++|+++.
T Consensus 28 ~~~~~~Q~~qal~Ni~~vL~~aG~--~dVvk~~iyl~d~~~~~~~~~v~~~~f~~~~~~~~~~~~~~~~~P~~t~v~V~~ 105 (118)
T cd06156 28 EGGITLQAVLSLQHLERVAKAMNV--QWVLAAVCYVTDESSVPIARSAWSKYCSELDLEDESRNESDDVNPPLVIVVVPE 105 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC--CCEEEEEEEEcChHHHHHHHHHHHHHhcCccccccccccccCCCCcEEEEEccc
Confidence 569999999999999999999999 9999999999999999999999999998630 000159999999999
Q ss_pred cccccceeEEEee
Q 004613 401 LEVGLGKAYIEVL 413 (742)
Q Consensus 401 L~~~~~~~~ieV~ 413 (742)
|+.+. .++|+++
T Consensus 106 L~~~~-~VEie~i 117 (118)
T cd06156 106 LPRGA-LVEWQGI 117 (118)
T ss_pred CCCCC-eEEEEEe
Confidence 98653 5677754
No 41
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.26 E-value=1e-10 Score=115.30 Aligned_cols=145 Identities=20% Similarity=0.165 Sum_probs=104.4
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
|++++|||||||.++++.+.+.|++|+++ ++-+... + ....+.++.+|+.+| |++..+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~~~v~~~-~~~~~~~------~----~~~~~~~~~~~~~~g-~~~~~~~~-------- 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHAL-SFDYGQR------H----AKEEEAAKLIAEKLG-PSTYVPAR-------- 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcCCcEEEE-EEECCCC------C----hhHHHHHHHHHHHHC-CCEEEeCc--------
Confidence 68999999999999999999999997765 3332111 1 113367899999999 66543211
Q ss_pred cccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhH------HHHHHH------HHhhcCCeEeeeccccCHHHHH
Q 004613 82 SYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQ------RLRVES------VCSRLGLVSLAYLWKQDQSLLL 149 (742)
Q Consensus 82 ~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yq------r~rve~------vc~rlgl~~l~pLW~~d~~~ll 149 (742)
+ ..++.++.++..++ |+++|++|+..++.. ..+++. ++.+.|+..+.|||..+..+++
T Consensus 61 --------~-~~~~~~l~~~a~~~-g~~~i~~G~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~PL~~~~K~ei~ 130 (169)
T cd01995 61 --------N-LIFLSIAAAYAEAL-GAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALNLGTENGIKIHAPLIDLSKAEIV 130 (169)
T ss_pred --------C-HHHHHHHHHHHHHC-CCCEEEEeeccCccCCCCCCCHHHHHHHHHHHHhhcCCCeEEEeCcccCCHHHHH
Confidence 0 13446677776666 999999999998731 222322 6678899999999999999999
Q ss_pred HHHHHcCCcEEEEEEecCCCCCccccCcc
Q 004613 150 QEMITNGINAITVKVAAMGLEPGKHLGKE 178 (742)
Q Consensus 150 ~em~~~G~~a~ii~Va~~gL~~~~~lG~~ 178 (742)
+.+.+.|+.....--...+ . .+|.|.=
T Consensus 131 ~~~~~~g~~~~~s~sC~~~-~-~~~CG~C 157 (169)
T cd01995 131 RLGGELGVPLELTWSCYNG-G-EKHCGEC 157 (169)
T ss_pred HHHhHcCCChhheeeccCC-C-CCCCCCC
Confidence 9999999977665444444 2 2477753
No 42
>KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.7e-09 Score=102.71 Aligned_cols=81 Identities=27% Similarity=0.525 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCcccHHHHHHHHHHhcCCCCCCCCCCcceEEecccccccccee
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKA 408 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~sl~dVv~vtlyL~Dm~df~~vN~vY~~~F~~~~~p~~pPARt~V~v~~L~~~~~~~ 408 (742)
.+++.+|+++++.|++++|+++|.+...++++++||.|+.||..+|++|.+||..+. |+|+|+.+..++.+ +.+
T Consensus 49 ~gg~~~q~~q~l~n~~~il~~a~a~~~~~V~~~i~l~d~~~f~~vn~v~~k~~~~~~-----pars~~~v~alp~~-~~i 122 (138)
T KOG2317|consen 49 EGGIVDQTEQALLNLEEILKAAGASLDLVVKVTIFLADIIDFAAVNKVYAKYFPKPN-----PARSCVQVAALPLN-GKI 122 (138)
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCccccEEEEEEEecchhHHHHHHHHHHHcCCCC-----cchhhHHHhhcCCC-Cce
Confidence 568999999999999999999999999999999999999999999999999999886 99999999888877 345
Q ss_pred EEEeeee
Q 004613 409 YIEVLVA 415 (742)
Q Consensus 409 ~ieV~a~ 415 (742)
+++++++
T Consensus 123 e~~~i~~ 129 (138)
T KOG2317|consen 123 EIECIAA 129 (138)
T ss_pred EEeeehh
Confidence 5665544
No 43
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=6.3e-09 Score=113.16 Aligned_cols=148 Identities=17% Similarity=0.179 Sum_probs=103.6
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEE-EEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVAL-ANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQ 79 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L-~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~ 79 (742)
||+++++|||-||..+++++.++||+|++| ..++..+. .+.....-...-++..|+-||||++.........+.
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~-----~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~ 78 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDG-----GGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNK 78 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHcCCeEEEEEEEeeccCC-----CCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHHH
Confidence 799999999999999999999999999998 45554311 122233334455888999999999999988666543
Q ss_pred cccc------------cCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhH-H-HHHHHHHhhcCCeEeeeccccCH
Q 004613 80 KLSY------------RMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQ-R-LRVESVCSRLGLVSLAYLWKQDQ 145 (742)
Q Consensus 80 ~~~Y------------~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yq-r-~rve~vc~rlgl~~l~pLW~~d~ 145 (742)
...| ++..|+-.-++..+|..+++ . |++.|++|+.+..-. . .+.-...........++|++..+
T Consensus 79 V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~-l-gad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~~ 156 (356)
T COG0482 79 VFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKE-L-GADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALSQ 156 (356)
T ss_pred HHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHH-c-CCCeEEEeeeEeeecCCcccccccCCCcccchhheecccCH
Confidence 3333 22346666677778888877 3 999999999982110 0 11222355667888888999888
Q ss_pred HHHHHHHHHc
Q 004613 146 SLLLQEMITN 155 (742)
Q Consensus 146 ~~ll~em~~~ 155 (742)
++|-.-|--.
T Consensus 157 ~ql~~~lFPl 166 (356)
T COG0482 157 EQLERLLFPL 166 (356)
T ss_pred HHHhhccccC
Confidence 8775544333
No 44
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.80 E-value=5.5e-10 Score=122.59 Aligned_cols=145 Identities=16% Similarity=0.100 Sum_probs=85.3
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEE-EEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVAL-ANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQ 79 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L-~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~ 79 (742)
|||++.+|||-||..|++++.++||+|+++ +.+.+.++ +..+...+.-..+-++..|+.||||++...+.....+.
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~~~~---~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~ 77 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQGYDVIGVTMRNWDEED---ESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEE 77 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHCT-EEEEEEEE-SS-SS---SHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHH
T ss_pred CeEEEEccCCHHHHHHHHHHHhhcccceEEEEEEecccc---ccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 899999999999999999999999999987 44444321 10011112223455888999999999999988766655
Q ss_pred cccc-----c-------CCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHH----HHHHHHHhhcCCeEeeecccc
Q 004613 80 KLSY-----R-------MTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQR----LRVESVCSRLGLVSLAYLWKQ 143 (742)
Q Consensus 80 ~~~Y-----~-------~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr----~rve~vc~rlgl~~l~pLW~~ 143 (742)
-.+| . +..++..-++-.+++.+++.. |++.|+||+.+.-... .+.-..+.....+..++||+.
T Consensus 78 Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~-g~d~iATGHYAri~~~~~~~~~~L~r~~D~~KDQSYfL~~l 156 (356)
T PF03054_consen 78 VIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGL-GADYIATGHYARIEKDEKNGRYRLLRGADPKKDQSYFLSRL 156 (356)
T ss_dssp THHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTT-T-SEEE---SEEEEEES-TTEEEEEE-SSTTC--GGGGTT-
T ss_pred HHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhc-CCCeeccceeEEEEeeccCCceEEEecCCCCCCceEEEEec
Confidence 4444 1 123555556667777777744 9999999998732111 111122556678888999998
Q ss_pred CHHHHH
Q 004613 144 DQSLLL 149 (742)
Q Consensus 144 d~~~ll 149 (742)
+|+.|-
T Consensus 157 ~~~~L~ 162 (356)
T PF03054_consen 157 PQEQLS 162 (356)
T ss_dssp -HHHHC
T ss_pred CHHHHH
Confidence 888663
No 45
>PRK14561 hypothetical protein; Provisional
Probab=98.73 E-value=1.1e-07 Score=96.64 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=89.2
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccc-
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQ- 79 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~- 79 (742)
||+++++||||||.+.++.+.+. +++.++ ++.-. | ....+.++.+|+.+|+|+....+.......
T Consensus 1 mkV~ValSGG~DSslll~~l~~~-~~v~a~-t~~~g-----------~-~~e~~~a~~~a~~lGi~~~~v~~~~~~~~~~ 66 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF-YDVELV-TVNFG-----------V-LDSWKHAREAAKALGFPHRVLELDREILEKA 66 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc-CCeEEE-EEecC-----------c-hhHHHHHHHHHHHhCCCEEEEECCHHHHHHH
Confidence 99999999999999998877766 677554 33111 1 112456999999999999999876421000
Q ss_pred -cccccC-CCcchHHHHHH-HHHHHHhhCCCceEEEEcccchh----hHHHHHHHHHhhcCCeEeeeccccCHHHHHHHH
Q 004613 80 -KLSYRM-TPGDEVEDMYI-LLNEVKRQIPSVTAVSSGAIASD----YQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEM 152 (742)
Q Consensus 80 -~~~Y~~-~~~de~e~l~~-~L~~vk~~~~~i~~v~~GaI~s~----yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em 152 (742)
..-|.+ ........+.. +|..+. + |++.|+.|....+ ..|..++..+.+.|++...|||+.+..++.+-.
T Consensus 67 ~~~~~~~~~P~~~~~~l~~~~l~~~a--~-g~~~Ia~G~n~DD~~et~~r~~~~a~~~~~gi~iirPL~~~~K~eI~~la 143 (194)
T PRK14561 67 VDMIIEDGYPNNAIQYVHEHALEALA--E-EYDVIADGTRRDDRVPKLSRSEIQSLEDRKGVQYIRPLLGFGRKTIDRLV 143 (194)
T ss_pred HHHHHHcCCCCchhHHHHHHHHHHHH--c-CCCEEEEEecCCCcchhccHHHHhhhhcCCCcEEEeeCCCCCHHHHHHHH
Confidence 001100 00111123443 555554 2 8888999888754 467777777777899999999999888776533
No 46
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.71 E-value=4.5e-08 Score=108.01 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=94.4
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEE-eecCCCCCCccCccccc----ccCHHHHHHHHHHcCCCeEEEecCCC
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALAN-LMPADDSVDELDSYMYQ----TVGHQIIVSYAECMGLPLFRRRIHGS 75 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~-~~p~~~~~~~~dS~m~q----~v~~~~i~~~A~algiPl~~~~i~g~ 75 (742)
||+++++||||||.++++.+.++|++|+++.. +...+. ++ .++ .-..+.++.+|+.+|||++...++..
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~-----~~-~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~ 74 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDD-----KN-DGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKE 74 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHcCCeEEEEEEEcccccc-----cc-cccCcCCHHHHHHHHHHHHHcCCCEEEEECHHH
Confidence 89999999999999999999999999998733 232221 11 111 22456688899999999999877543
Q ss_pred cccccc-----cc-------cCCCcchHHHHHHHHHHHHhhCCCceEEEEcccc---hhhHHHHHHHHHhhcCC------
Q 004613 76 TRHQKL-----SY-------RMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIA---SDYQRLRVESVCSRLGL------ 134 (742)
Q Consensus 76 ~~~~~~-----~Y-------~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~---s~yqr~rve~vc~rlgl------ 134 (742)
..+... .| ++..+.-.-++..+++.+++.+ |++.|++|+.+ .+..+.|+-+- .+...
T Consensus 75 f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~-G~~~IATGHya~~~~d~~~~~l~~~-~d~~kDqsy~L 152 (352)
T TIGR00420 75 YWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELL-GNDKIATGHYARIAEIEGKSLLLRA-LDKNKDQSYFL 152 (352)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHc-CCCEEEECCcceEeCCCCcEEEEEc-cCCCcCcceec
Confidence 211111 11 1112222222333344444445 89999999987 33322221111 11111
Q ss_pred ---------eEeeeccccCHHHHHHHHHHcCCcEEEEEEecCCC
Q 004613 135 ---------VSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGL 169 (742)
Q Consensus 135 ---------~~l~pLW~~d~~~ll~em~~~G~~a~ii~Va~~gL 169 (742)
..++||+....+++.+-..+.|+.. ..|-.+.|+
T Consensus 153 ~~l~~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~-~~k~~Sq~i 195 (352)
T TIGR00420 153 YHLSHEQLAKLLFPLGELLKPEVRQIAKNAGLPT-AEKKDSQGI 195 (352)
T ss_pred ccCCHHHhhhhcccCCCCCHHHHHHHHHHcCCCC-CCCCCCCCe
Confidence 1456777777777777677777753 224444443
No 47
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.63 E-value=1.8e-07 Score=103.00 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=93.6
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
||+++.+|||+||.++++.+.+.|++|.++.--+......... ...++.-..+.++.+|+.+|||++...+........
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~G~~V~~v~~~~~~~~~~~~~-~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~v 79 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDETGK-GGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRV 79 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHcCCcEEEEEEeCCCccccccc-CCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHH
Confidence 7999999999999999999999999988773322211100000 122344556778999999999999998753221111
Q ss_pred c-----ccc----CCCcchHH-HH-HHHHHHHHhhCCCceEEEEcccchhh--------------HHHHHHHHHhhcCCe
Q 004613 81 L-----SYR----MTPGDEVE-DM-YILLNEVKRQIPSVTAVSSGAIASDY--------------QRLRVESVCSRLGLV 135 (742)
Q Consensus 81 ~-----~Y~----~~~~de~e-~l-~~~L~~vk~~~~~i~~v~~GaI~s~y--------------qr~rve~vc~rlgl~ 135 (742)
. .|. +..+-.-. .+ +.+|.+..+++ |++.|++|+.+.+- |..+.-.+...---.
T Consensus 80 i~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~-g~~~IATGH~a~d~~~~~L~rg~d~~kDqsy~l~~l~~~~l~~ 158 (346)
T PRK00143 80 IDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYAREL-GADYIATGHYARIRDGRELLRGVDPNKDQSYFLYQLTQEQLAK 158 (346)
T ss_pred HHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHC-CCCEEEeeeeccccccceEEEccCCCcChhhhhccCCHHHhcc
Confidence 0 110 11111111 12 34555555555 99999999988542 211111111111125
Q ss_pred EeeeccccCHHHHHHHHHHcCCcE
Q 004613 136 SLAYLWKQDQSLLLQEMITNGINA 159 (742)
Q Consensus 136 ~l~pLW~~d~~~ll~em~~~G~~a 159 (742)
.++||.....+++.+-..+.|+..
T Consensus 159 ~i~PL~~~~K~eVr~~A~~~gl~~ 182 (346)
T PRK00143 159 LLFPLGELTKPEVREIAEEAGLPV 182 (346)
T ss_pred eeccCccCCHHHHHHHHHHcCCCc
Confidence 678888888777777777777753
No 48
>PRK08349 hypothetical protein; Validated
Probab=98.59 E-value=4.9e-07 Score=91.90 Aligned_cols=145 Identities=17% Similarity=0.131 Sum_probs=90.3
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeE---EEecCCCcc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLF---RRRIHGSTR 77 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~---~~~i~g~~~ 77 (742)
||+++++||||||..+++.+++.|++|.++.--+.. .+. .-..++.+.+++.+|+|+. .....+...
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~~g~~v~av~~d~~~----~~~------~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLRRGVEVYPVHFRQDE----KKE------EKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHHcCCeEEEEEEeCCH----HHH------HHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 899999999999999999999999998876332211 011 1113445556666679873 322211100
Q ss_pred cc--------cccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhh---cCCeEeeeccccCHH
Q 004613 78 HQ--------KLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSR---LGLVSLAYLWKQDQS 146 (742)
Q Consensus 78 ~~--------~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~r---lgl~~l~pLW~~d~~ 146 (742)
.. ...+.+..+. --++.++.++.+++ |++.|++|+=..+.--+-+.|.... -++..+.||+..+..
T Consensus 71 ~~~~~~~~~~~~~~~c~~cr--~~~~~~a~~~A~~~-g~~~I~tG~~~~d~a~~~l~nl~~~~~~~~i~i~rPL~~~~K~ 147 (198)
T PRK08349 71 PVFEKLRELKKEKWTCIFCK--YTMYRKAERIAHEI-GASAIITGDSLGQVASQTLDNLMVISTATDLPVLRPLIGLDKE 147 (198)
T ss_pred HHHHHHHhhCCCCCchHHHH--HHHHHHHHHHHHHc-CCCEEEEecCCchHHHHHHHHHhccccccCCeEEcCCCCCCHH
Confidence 00 0001111111 12456666777676 9999999976544433444444433 347889999999999
Q ss_pred HHHHHHHHcCCc
Q 004613 147 LLLQEMITNGIN 158 (742)
Q Consensus 147 ~ll~em~~~G~~ 158 (742)
++++-....|.-
T Consensus 148 eI~~~a~~~g~~ 159 (198)
T PRK08349 148 EIVKIAKEIGTF 159 (198)
T ss_pred HHHHHHHHcCCh
Confidence 999988888853
No 49
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.49 E-value=9.4e-07 Score=89.67 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=93.4
Q ss_pred EEEEeeCchHHHHHHHHHHHcCC-cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccc---
Q 004613 3 VVALVSGGKDSCYAMMKCIQYGH-QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRH--- 78 (742)
Q Consensus 3 ~val~SGGKDS~~al~~~~~~G~-~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~--- 78 (742)
+++++||||||++.++.+.+.+. +|.++ ++-.. ..+....+.++.+|+.+|+|++...+......
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v-~vd~g----------~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~ 69 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAV-TATSP----------LFPRRELEEAKRLAKEIGIRHEVIETDELDDPEFA 69 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEE-EeCCC----------CCCHHHHHHHHHHHHHcCCcEEEEeCCccccHHHh
Confidence 57999999999999999988864 77766 43211 11334566799999999999999887621100
Q ss_pred ccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeecc--ccCHHHHHHHHHHcC
Q 004613 79 QKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLW--KQDQSLLLQEMITNG 156 (742)
Q Consensus 79 ~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW--~~d~~~ll~em~~~G 156 (742)
......+..+. .-.+..+.+..+++ |++.|++|+..++....+.. .-...++..+.||= +.+..++.+-.-+.|
T Consensus 70 ~~~~~~~~~~r--~~~~~~l~~~a~~~-g~~~I~~G~~~dD~~e~~~~-~~~~~~~~iirPL~~~~~~K~ei~~~a~~~g 145 (202)
T cd01990 70 KNPPDRCYLCK--KALYEALKEIAEEL-GLDVVLDGTNADDLGDYRPG-LKALRELGVRSPLAEAGLGKAEIRELARELG 145 (202)
T ss_pred cCCCCccchhH--HHHHHHHHHHHHHC-CCCEEEEcCccccCcccChH-HHHHHHcCCcCchhhcCCCHHHHHHHHHHcC
Confidence 00000000111 23456677777776 99999999998765443321 11122366789997 678899988888888
Q ss_pred CcE
Q 004613 157 INA 159 (742)
Q Consensus 157 ~~a 159 (742)
+..
T Consensus 146 l~~ 148 (202)
T cd01990 146 LPT 148 (202)
T ss_pred CCC
Confidence 765
No 50
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.47 E-value=1.9e-07 Score=103.29 Aligned_cols=136 Identities=18% Similarity=0.223 Sum_probs=82.6
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEE-EeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALA-NLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~-~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
|+++.+|||+||..+++.+.+.|++|+++. +..+... + .-..+.++.+|+.+|||++...++......-
T Consensus 7 kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~~------~----~~d~~~a~~va~~LgIp~~vvd~~~~f~~~v 76 (360)
T PRK14665 7 RVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNG------S----TEYLEDARALAERLGIGHITYDARKVFRKQI 76 (360)
T ss_pred EEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCCC------C----hHHHHHHHHHHHHhCCCEEEEecHHHHHHHH
Confidence 899999999999999999999999998873 2322211 1 1124557899999999999987753221111
Q ss_pred -----cccc----CCCcchHHH-H-HHHHHHHHhhCCCceEEEEcccchhhHHHHHH--HHHhhcCCeEeeeccccCHHH
Q 004613 81 -----LSYR----MTPGDEVED-M-YILLNEVKRQIPSVTAVSSGAIASDYQRLRVE--SVCSRLGLVSLAYLWKQDQSL 147 (742)
Q Consensus 81 -----~~Y~----~~~~de~e~-l-~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve--~vc~rlgl~~l~pLW~~d~~~ 147 (742)
..|. +..+..-.. + +.+|.+..+++ |++.|++|+.+..-.....- ...........++||+.+++.
T Consensus 77 ~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~-G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSyfL~~l~~~~ 155 (360)
T PRK14665 77 IDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEM-GIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFFLWGLRQEI 155 (360)
T ss_pred HhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEECCccceeccCCcEEEEeecCCCCCceEEecCCCHHH
Confidence 1121 111111112 2 34555555555 99999999987421000000 012235566677788888766
Q ss_pred H
Q 004613 148 L 148 (742)
Q Consensus 148 l 148 (742)
|
T Consensus 156 l 156 (360)
T PRK14665 156 L 156 (360)
T ss_pred H
Confidence 5
No 51
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.39 E-value=2.7e-06 Score=94.66 Aligned_cols=141 Identities=17% Similarity=0.137 Sum_probs=94.7
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCC-------eEEEecCC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLP-------LFRRRIHG 74 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiP-------l~~~~i~g 74 (742)
|+++++|||+||..|++.+++.|++|++|.- ...+ + ..+.+..+|+.|+.+ ++.....-
T Consensus 182 kvlvllSGGiDSpVAa~ll~krG~~V~~v~f-~~g~-------~------~~e~v~~la~~L~~~~~~~~i~l~~v~~~~ 247 (381)
T PRK08384 182 KVVALLSGGIDSPVAAFLMMKRGVEVIPVHI-YMGE-------K------TLEKVRKIWNQLKKYHYGGKAELIVVKPQE 247 (381)
T ss_pred cEEEEEeCChHHHHHHHHHHHcCCeEEEEEE-EeCH-------H------HHHHHHHHHHHhcccccCCcceEEEEChHH
Confidence 7899999999999999999999999988733 2111 1 256688899999955 44443210
Q ss_pred C-cc-cc-----cccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHH---HHHhhcCCeEeeeccccC
Q 004613 75 S-TR-HQ-----KLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVE---SVCSRLGLVSLAYLWKQD 144 (742)
Q Consensus 75 ~-~~-~~-----~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve---~vc~rlgl~~l~pLW~~d 144 (742)
. .. .. ...|.+.-+.- -++.++.++.+++ |+++|++|+-+.+---.-.+ .+....++..+.||.+.|
T Consensus 248 ~~~v~~~i~~~~~~~~~C~~Ckr--~m~r~a~~iA~~~-g~~~IaTGhslgqvaSQtl~Nl~~i~~~~~lpilRPLi~~d 324 (381)
T PRK08384 248 RERIIQKLKELKKENYTCVFCKF--MMVKHADRIAKEF-GAKGIVMGDSLGQVASQTLENMYIVSQASDLPIYRPLIGMD 324 (381)
T ss_pred HHHHHHHHHHhccCCCchHHHHH--HHHHHHHHHHHHc-CCCEEEEcccchhHHHHHHHHHHHHhccCCCcEEeeCCCCC
Confidence 0 00 00 01122222222 3678888888887 99999999987432112112 233445678999999999
Q ss_pred HHHHHHHHHHcC-CcE
Q 004613 145 QSLLLQEMITNG-INA 159 (742)
Q Consensus 145 ~~~ll~em~~~G-~~a 159 (742)
.+++.+---+-| ++.
T Consensus 325 K~EIi~~Ar~iGT~~~ 340 (381)
T PRK08384 325 KEEIVAIAKTIGTFEL 340 (381)
T ss_pred HHHHHHHHHHcCCccc
Confidence 999999888888 774
No 52
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.38 E-value=6.3e-06 Score=83.80 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=92.1
Q ss_pred EEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcc--c--
Q 004613 3 VVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTR--H-- 78 (742)
Q Consensus 3 ~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~--~-- 78 (742)
+++++|||+||.+.++.+.+.|++|.++..-++. .+....+.++.+|+.+|+|++..++..-.. .
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~~~-----------~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~ 69 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDEGYEVHAITFDYGQ-----------RHSRELESARKIAEALGIEHHVIDLSLLKQLGGSA 69 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHcCCcEEEEEEECCC-----------CCHHHHHHHHHHHHHhCCCeEEEechhhccccccc
Confidence 4789999999999999999999998876443221 122345679999999999999887763111 0
Q ss_pred -ccccccCC-Ccch---H---------HHHHHHHHHHHhhCCCceEEEEcccchh---hH---------HHHHHHHHhhc
Q 004613 79 -QKLSYRMT-PGDE---V---------EDMYILLNEVKRQIPSVTAVSSGAIASD---YQ---------RLRVESVCSRL 132 (742)
Q Consensus 79 -~~~~Y~~~-~~de---~---------e~l~~~L~~vk~~~~~i~~v~~GaI~s~---yq---------r~rve~vc~rl 132 (742)
.+....+. ...+ . .-++..+..+.+++ |+++|+.|....+ |. -....+.....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~-g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~~~~~ 148 (201)
T TIGR00364 70 LTDESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEAL-GAEAVITGVCETDFSGYPDCRDEFVKAFNHALNLGMLT 148 (201)
T ss_pred ccCCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHC-CCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHhhcCC
Confidence 00000000 0000 0 12335566656665 9999999987644 21 11222333455
Q ss_pred CCeEeeeccccCHHHHHHHHHHcCC
Q 004613 133 GLVSLAYLWKQDQSLLLQEMITNGI 157 (742)
Q Consensus 133 gl~~l~pLW~~d~~~ll~em~~~G~ 157 (742)
++..++||=..+..++++.--+.|+
T Consensus 149 ~~~i~~Pl~~~~K~eI~~la~~~g~ 173 (201)
T TIGR00364 149 PVKIRAPLMDLTKAEIVQLADELGV 173 (201)
T ss_pred CeEEEECCcCCCHHHHHHHHHHcCC
Confidence 6788999999999999888888883
No 53
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.38 E-value=2.8e-06 Score=94.81 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=109.2
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CC-cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccc-
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GH-QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRH- 78 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~-~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~- 78 (742)
|+++.+|||+||.+.++.+.+. |+ +|+|+.--+... .--.+.++..|+.+|+|++...++.....
T Consensus 4 kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~~------------~~e~~~a~~~a~~lGi~~~vvd~~eef~~~ 71 (394)
T PRK13820 4 KVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQP------------EEEIKEAEEKAKKLGDKHYTIDAKEEFAKD 71 (394)
T ss_pred eEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCCC------------hHHHHHHHHHHHHcCCCEEEEeCHHHHHHH
Confidence 8999999999999999999877 88 888773322110 01234588999999999999877632210
Q ss_pred -------ccccccC---CCcchHHHHHHHHHHHHhhCCCceEEEEcccch-hhHHHHHHHHHhhcCCeEeeec--cccCH
Q 004613 79 -------QKLSYRM---TPGDEVEDMYILLNEVKRQIPSVTAVSSGAIAS-DYQRLRVESVCSRLGLVSLAYL--WKQDQ 145 (742)
Q Consensus 79 -------~~~~Y~~---~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s-~yqr~rve~vc~rlgl~~l~pL--W~~d~ 145 (742)
.+..|.+ ...---.-++..|.++.+++ |+++|+.|+-.. +.| .|.|..+..++|..++|+ |+...
T Consensus 72 ~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~-G~~~IA~G~t~~gnDq-~rfe~~~~a~~l~viaP~re~~ltK 149 (394)
T PRK13820 72 YIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKE-GASAIAHGCTGKGNDQ-LRFEAVFRASDLEVIAPIRELNLTR 149 (394)
T ss_pred HHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHc-CCCEEEECCCCCcchH-HHHHHhhHhhcCeeeCchhccCCCH
Confidence 0111211 00011334567777777776 999999999764 444 456777777789999997 66788
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCCccccCcccc
Q 004613 146 SLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180 (742)
Q Consensus 146 ~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~ 180 (742)
+++++-.-+.|+.....+=+.+-.|+ ..+|+++.
T Consensus 150 ~ei~~ya~~~gip~~~~~~~~yS~d~-nlw~~s~e 183 (394)
T PRK13820 150 EWEIEYAKEKGIPVPVGKEKPWSIDE-NLWSRSIE 183 (394)
T ss_pred HHHHHHHHHcCCCCCcCCCCCccccc-cccccccc
Confidence 88888888899877544333344554 35555543
No 54
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.36 E-value=1.3e-05 Score=80.44 Aligned_cols=147 Identities=13% Similarity=0.170 Sum_probs=92.8
Q ss_pred eEEEEeeCchHHHHHHHHHHHc----CCcEEEEEEeecCCCCCCccCccc-ccccCHHHHHHHHHHcCCCeEEEecCCCc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY----GHQIVALANLMPADDSVDELDSYM-YQTVGHQIIVSYAECMGLPLFRRRIHGST 76 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~----G~~vv~L~~~~p~~~~~~~~dS~m-~q~v~~~~i~~~A~algiPl~~~~i~g~~ 76 (742)
|+++.+||||||...++.+.+. |++|.++ ++- .. +. ......+.++.+|+.+|+|++...+....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v-~vd-~g--------~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 70 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAA-HVD-HG--------LRPESDEEAEFVQQFCKKLNIPLEIKKVDVKA 70 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEE-EeC-CC--------CChhHHHHHHHHHHHHHHcCCCEEEEEecchh
Confidence 6899999999999999988763 7776554 331 10 00 00123566889999999999988775321
Q ss_pred ccccccccCCCcchH-HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhc----------------CCeEeee
Q 004613 77 RHQKLSYRMTPGDEV-EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL----------------GLVSLAY 139 (742)
Q Consensus 77 ~~~~~~Y~~~~~de~-e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rl----------------gl~~l~p 139 (742)
... .+....++.- .-.+.+|.++.+++ |++.|++|.-.++--.+...+++..- ++..+.|
T Consensus 71 ~~~--~~~~~~~~~~r~~R~~~l~~~a~~~-g~~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirP 147 (189)
T TIGR02432 71 LAK--GKKKNLEEAAREARYDFFEEIAKKH-GADYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRP 147 (189)
T ss_pred hcc--ccCCCHHHHHHHHHHHHHHHHHHHc-CCCEEEEcCccHHHHHHHHHHHHcCCCcccccCCccccccCCCCEEECC
Confidence 100 0100111111 12344666666666 99999999999887666665555422 4556777
Q ss_pred ccccCHHHHHHHHHHcCCcEEE
Q 004613 140 LWKQDQSLLLQEMITNGINAIT 161 (742)
Q Consensus 140 LW~~d~~~ll~em~~~G~~a~i 161 (742)
|+.....++.+-.-..|+....
T Consensus 148 L~~~~k~ei~~~~~~~~lp~~~ 169 (189)
T TIGR02432 148 LLGISKSEIEEYLKENGLPWFE 169 (189)
T ss_pred CCCCCHHHHHHHHHHcCCCeee
Confidence 8777777777666667775543
No 55
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.27 E-value=7.7e-06 Score=86.33 Aligned_cols=142 Identities=16% Similarity=0.151 Sum_probs=89.8
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcc--cc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTR--HQ 79 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~--~~ 79 (742)
|+++.+|||+||++.++.+.+.|++|+++.--.|.. +.--.+.+..+|+.+|+|++.+.+..-.. ..
T Consensus 14 ~vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~~-----------~~~e~~~a~~~a~~lgi~~~ii~~~~~~~~~~~ 82 (252)
T TIGR00268 14 KVLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPSI-----------SPRELEDAIIIAKEIGVNHEFVKIDKMINPFRA 82 (252)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCCC-----------CHHHHHHHHHHHHHcCCCEEEEEcHHHHHHHHh
Confidence 689999999999999999999999987764322211 11123557889999999999887642110 00
Q ss_pred cccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHH-HHhhcCCeEeeec--cccCHHHHHHHHHHcC
Q 004613 80 KLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVES-VCSRLGLVSLAYL--WKQDQSLLLQEMITNG 156 (742)
Q Consensus 80 ~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~-vc~rlgl~~l~pL--W~~d~~~ll~em~~~G 156 (742)
+....+..+. ..++..+.++.+++ |++.|++|+-.++....|-.. .....| ...|| ++.+..++.+-.-+.|
T Consensus 83 n~~~~c~~ck--~~~~~~l~~~A~~~-g~~~I~~G~n~dD~~~~rpg~~a~~~~~--~~~PL~~~~l~K~eIr~la~~~g 157 (252)
T TIGR00268 83 NVEERCYFCK--KMVLSILVKEAEKR-GYDVVVDGTNADDLFDHRPGYRAVKEFN--GVSPWAEFGITKKEIREIAKSLG 157 (252)
T ss_pred CCCcccchhh--HHHHHHHHHHHHHc-CCCEEEECCCCcccccccHHHHHHHHcC--CCCcchhcCCCHHHHHHHHHHcC
Confidence 0000110111 23566777776666 899999998775533222111 112233 34888 5677888877777888
Q ss_pred CcE
Q 004613 157 INA 159 (742)
Q Consensus 157 ~~a 159 (742)
+..
T Consensus 158 l~~ 160 (252)
T TIGR00268 158 ISF 160 (252)
T ss_pred CCc
Confidence 873
No 56
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.27 E-value=9.1e-06 Score=80.88 Aligned_cols=150 Identities=19% Similarity=0.125 Sum_probs=89.2
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHH---HHHHcCCCeEEEecCCCccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVS---YAECMGLPLFRRRIHGSTRH 78 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~---~A~algiPl~~~~i~g~~~~ 78 (742)
|+++++||||||+++++.+.+.|++|+++.--++... .. |+ .+.+.. .+..+|+++....+.-....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g~~v~av~~d~g~~~-~~--~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 70 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFT-SE--KA-------REKVEDLARKLARYSPGHKLVVIIFTFFV 70 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcCCeEEEEEEeCCCCC-ch--HH-------HHHHHHHHHHHHHhCCCCceEEEeCcHHH
Confidence 6899999999999999999999999887643332211 00 00 111222 23446666643333210000
Q ss_pred ccccc-------cCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHH---hhcCCeEeeeccccCHHHH
Q 004613 79 QKLSY-------RMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVC---SRLGLVSLAYLWKQDQSLL 148 (742)
Q Consensus 79 ~~~~Y-------~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc---~rlgl~~l~pLW~~d~~~l 148 (742)
....| .+..+. .-++..+.+..+++ |++.|++|+...++.-+.+.+.. ..-++..+.||=..+..++
T Consensus 71 ~~~~~~~~~~~~~c~~Cr--~~~~~~~~~~A~~~-g~~~I~~G~~~~D~~~~~~~~l~~~~~~~~~~i~rPl~~~~K~eI 147 (177)
T cd01712 71 QKEIYGYGKEKYRCILCK--RMMYRIAEKLAEEL-GADAIVTGESLGQVASQTLENLLVISSGTDLPILRPLIGFDKEEI 147 (177)
T ss_pred HHHHHHhCCCccHhHHHH--HHHHHHHHHHHHHc-CCCEEEEccCcccchHHHHHhhhhcccCCCCeEECCCCCCCHHHH
Confidence 00001 110111 24455666666665 99999999988776444445544 4456888888888888888
Q ss_pred HHHHHHcCCcEEEEEE
Q 004613 149 LQEMITNGINAITVKV 164 (742)
Q Consensus 149 l~em~~~G~~a~ii~V 164 (742)
.+--.+.|+......+
T Consensus 148 ~~~a~~~gl~~~~~~~ 163 (177)
T cd01712 148 IGIARRIGTYDISIRP 163 (177)
T ss_pred HHHHHHcCCcceeccC
Confidence 8877777766555433
No 57
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.27 E-value=2.4e-05 Score=77.57 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=84.4
Q ss_pred eEEEEeeCchHHHHHHHHHHHc------CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY------GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGS 75 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~------G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~ 75 (742)
|+++.+||||||+..++.+.+. |++++++ ++-.... . +...-.+.++.+|+.+|+|+....+...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~-~~d~~~~------~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 71 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEAL-TVDEGIP------G--YRDESLEVVERLAEELGIELEIVSFKEE 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEE-EEECCCC------C--CcHHHHHHHHHHHHHcCCceEEEehhhh
Confidence 6899999999999999988775 3466554 3321110 0 1112346688999999999998877521
Q ss_pred c---ccccccccCCCcch-HHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhh----------------cCCe
Q 004613 76 T---RHQKLSYRMTPGDE-VEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSR----------------LGLV 135 (742)
Q Consensus 76 ~---~~~~~~Y~~~~~de-~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~r----------------lgl~ 135 (742)
. ...........+.- -.-.+..|.++.+++ +++.|++|+-..+.-.+-..+.+.. -++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~-g~~~l~~Gh~~dD~~et~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 150 (185)
T cd01993 72 YTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKEL-GADKLATGHNLDDEAETLLMNLLRGGILRLMRPGPILYLDEGDVT 150 (185)
T ss_pred cchhhhhhccCCCCCCCccHHHHHHHHHHHHHHc-CCCEEEEcCChHHHHHHHHHHHHhcCHHHHcCCCCccccCCCCce
Confidence 1 00000000000110 012334555665665 8999999998876655544444422 2345
Q ss_pred EeeeccccCHHHHHHHHHHcCCc
Q 004613 136 SLAYLWKQDQSLLLQEMITNGIN 158 (742)
Q Consensus 136 ~l~pLW~~d~~~ll~em~~~G~~ 158 (742)
.+.||......++.+=.-..|+.
T Consensus 151 iirPL~~~~k~eI~~~~~~~~l~ 173 (185)
T cd01993 151 RIRPLVYVREKEIVLYAELNGLP 173 (185)
T ss_pred EEeecccCCHHHHHHHHHHcCCC
Confidence 56666665555555544445543
No 58
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.22 E-value=3e-06 Score=93.65 Aligned_cols=152 Identities=15% Similarity=0.130 Sum_probs=88.4
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEE-EeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALA-NLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~-~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
|+++++|||+||+++++.+.+.|++|+++. +....+. . ....++.-..+.++.+|+.+|||++...++.......
T Consensus 1 kVlValSGGvDSsvla~lL~~~g~~v~~v~i~~~~~~~---~-~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v 76 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDD---G-KGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKV 76 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCcEEEEEEecccccc---c-ccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHH
Confidence 689999999999999999999999998873 3322210 0 0111233445678999999999999988764321110
Q ss_pred -----cccc----CCCcchHH-HH-HHHHHHHHhhCCCceEEEEcccchhhHHH----HHHHHHhhcC------------
Q 004613 81 -----LSYR----MTPGDEVE-DM-YILLNEVKRQIPSVTAVSSGAIASDYQRL----RVESVCSRLG------------ 133 (742)
Q Consensus 81 -----~~Y~----~~~~de~e-~l-~~~L~~vk~~~~~i~~v~~GaI~s~yqr~----rve~vc~rlg------------ 133 (742)
..|. +..+-.-. .+ +.+|.+..++. |++.|++|+.+.+-..+ ++-+-....+
T Consensus 77 ~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~-g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~~ 155 (349)
T cd01998 77 FEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKL-GADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQE 155 (349)
T ss_pred HHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHc-CcCEEEECCcCCeeecCCCceEEeecCCCCCCcceEeccCCHH
Confidence 0111 10111101 12 44555555555 99999999987542111 1101011001
Q ss_pred --CeEeeeccccCHHHHHHHHHHcCCc
Q 004613 134 --LVSLAYLWKQDQSLLLQEMITNGIN 158 (742)
Q Consensus 134 --l~~l~pLW~~d~~~ll~em~~~G~~ 158 (742)
...++||-.....++.+-..+.|+.
T Consensus 156 ~l~~ii~PL~~~~K~eVr~~A~~~gl~ 182 (349)
T cd01998 156 QLSRLIFPLGDLTKPEVREIAKELGLP 182 (349)
T ss_pred HHhheeecCCCCCHHHHHHHHHHcCCC
Confidence 2456666666666666666666665
No 59
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.21 E-value=3.8e-06 Score=93.65 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=104.3
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCC-CeEEEecCCCccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGL-PLFRRRIHGSTRHQK 80 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algi-Pl~~~~i~g~~~~~~ 80 (742)
|+++++|||-||.+.+..+.+.|++|+|+.--.+.. +.--.+.++..|+.+|+ |++.++++......-
T Consensus 4 kVvVA~SGGvDSSvla~~l~e~G~~Viavt~d~gq~-----------~~~El~~a~~~A~~lG~~~~~viD~~eef~e~v 72 (400)
T PRK04527 4 DIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGGV-----------DAEERDFIEKRAAELGAASHVTVDGGPAIWEGF 72 (400)
T ss_pred cEEEEEcCChHHHHHHHHHHHcCCcEEEEEEEeCCC-----------CHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHH
Confidence 799999999999999999999999999885543321 11123457889999999 699888775443211
Q ss_pred c--------c----ccCCCcchHHHHHHHHHHHHhhCCCceEEEEccc--chhhHHHHHHHHHhhcCCeEeeec--ccc-
Q 004613 81 L--------S----YRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAI--ASDYQRLRVESVCSRLGLVSLAYL--WKQ- 143 (742)
Q Consensus 81 ~--------~----Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI--~s~yqr~rve~vc~rlgl~~l~pL--W~~- 143 (742)
. - |+-.-++. -=++..|.++.++. |+++|+.|.- ..+..|.|.=-.+.. .+...+|| |+.
T Consensus 73 i~p~i~aNa~y~G~yPl~~~nR-~~~~~~l~e~A~~~-G~~~IA~G~tgkgnDq~rfrpg~~Al~-el~ViaPlre~~~~ 149 (400)
T PRK04527 73 VKPLVWAGEGYQGQYPLLVSDR-YLIVDAALKRAEEL-GTRIIAHGCTGMGNDQVRFDLAVKALG-DYQIVAPIREIQKE 149 (400)
T ss_pred HHHHHhcchhhcCCCCCccccH-HHHHHHHHHHHHHC-CCCEEEecCcCCCCchhhccHHHHHhh-cCCccchHHHhcCc
Confidence 1 1 11000111 12455565555555 9999999998 455444443333333 55667775 665
Q ss_pred ---CHHHHHHHHHHcCCcEEEEEEecCCCCCccccCcccc
Q 004613 144 ---DQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180 (742)
Q Consensus 144 ---d~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~ 180 (742)
.++++++-..+.|+.+-..+- .+-.|+ ..+|+++.
T Consensus 150 k~~~R~~~i~ya~~~gipv~~~~~-~yS~D~-Nlw~~s~E 187 (400)
T PRK04527 150 HTQTRAYEQKYLEERGFGVRAKQK-AYTINE-NLLGVTMS 187 (400)
T ss_pred ccccHHHHHHHHHHcCCCCCCCCC-Cccccc-chhheecc
Confidence 577778888889987744322 255564 46666654
No 60
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.19 E-value=3.9e-05 Score=76.41 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=87.8
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCC----cEEEEEEeecCCCCCCccCccccc-ccCHHHHHHHHHHcCCCeEEEecCCCc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGH----QIVALANLMPADDSVDELDSYMYQ-TVGHQIIVSYAECMGLPLFRRRIHGST 76 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~----~vv~L~~~~p~~~~~~~~dS~m~q-~v~~~~i~~~A~algiPl~~~~i~g~~ 76 (742)
|+++.+||||||...++.+.+.+. +|.++ ++-... .+. .-..+.+..+|+.+|+|++........
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v-~id~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 70 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAV-HVDHGL---------RPESDEEAAFVADLCAKLGIPLYILVVALAP 70 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEE-EecCCC---------CchHHHHHHHHHHHHHHcCCcEEEEeecccc
Confidence 689999999999999999988763 66544 331110 011 123556888999999999877111000
Q ss_pred ccccccccCCCcchH-HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhc---------------CCeEeeec
Q 004613 77 RHQKLSYRMTPGDEV-EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL---------------GLVSLAYL 140 (742)
Q Consensus 77 ~~~~~~Y~~~~~de~-e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rl---------------gl~~l~pL 140 (742)
... .+.++.- .-.+.+|.++..++ +++.|++|+...+...+...+++..- +...+.||
T Consensus 71 -~~~----~~~~~~~r~~r~~~l~~~a~~~-~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl 144 (185)
T cd01992 71 -KPG----GNLEAAAREARYDFFAEIAKEH-GADVLLTAHHADDQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPL 144 (185)
T ss_pred -CCC----CCHHHHHHHHHHHHHHHHHHHc-CCCEEEEcCCcHHHHHHHHHHHHccCCcccccCCCcccCCCCCeEECCC
Confidence 000 0001111 22345666666666 99999999999988777766665433 34456666
Q ss_pred cccCHHHHHHHHHHcCCcEE
Q 004613 141 WKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 141 W~~d~~~ll~em~~~G~~a~ 160 (742)
......++.+-.-..|+...
T Consensus 145 ~~~~k~eI~~~~~~~~l~~~ 164 (185)
T cd01992 145 LGITRAEIEAYLRENGLPWW 164 (185)
T ss_pred CCCCHHHHHHHHHHcCCCeE
Confidence 66666666555555555443
No 61
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.19 E-value=8.1e-06 Score=91.36 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=96.4
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCe-EEEecCCCccc-
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPL-FRRRIHGSTRH- 78 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl-~~~~i~g~~~~- 78 (742)
|+++.+|||+||.+.++.+.++ |++|+|+.--.+.. . --.+.++..|+.+|+|. +....+.....
T Consensus 7 kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq~--~----------~el~~a~~~A~~lGi~~~~v~dl~~ef~~~ 74 (404)
T PLN00200 7 KVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQG--I----------EELEGLEAKAKASGAKQLVVKDLREEFVRD 74 (404)
T ss_pred eEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCCC--h----------HHHHHHHHHHHHcCCCEEEEEeCHHHHHHh
Confidence 8999999999999999999888 99998874433211 0 12455889999999985 55555432210
Q ss_pred -------cccc----ccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccch-hhHHHHHHHHHhh--cCCeEeeec--cc
Q 004613 79 -------QKLS----YRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIAS-DYQRLRVESVCSR--LGLVSLAYL--WK 142 (742)
Q Consensus 79 -------~~~~----Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s-~yqr~rve~vc~r--lgl~~l~pL--W~ 142 (742)
.+.. |.+...-.---++..|.++.++. |+++|+.|+-.. +.|. |.+.-+.. -.+..++|| |+
T Consensus 75 ~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~-G~~~VahG~tgkGnDq~-rf~~~~~al~pel~ViaPlre~~ 152 (404)
T PLN00200 75 YIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEV-GADAVAHGATGKGNDQV-RFELTFFALNPELKVVAPWREWD 152 (404)
T ss_pred hcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHc-CCCEEEeCCcCCCCcHH-HHHHHHHHhCCCCeeeCchhhcC
Confidence 0111 22211111224566666666665 999999999883 3332 34333332 245788887 44
Q ss_pred cC-HHHHHHHHHHcCCcEEEEEEecCCCCCccccCccc
Q 004613 143 QD-QSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEI 179 (742)
Q Consensus 143 ~d-~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l 179 (742)
.. .+++++-.-+.|+.+-..+-...-.|+ ..+|+++
T Consensus 153 ~~~r~e~~~~A~~~Gipv~~~~~~~yS~D~-Nlw~~s~ 189 (404)
T PLN00200 153 IKGREDLIEYAKKHNIPVPVTKKSIYSRDR-NLWHISY 189 (404)
T ss_pred CCCHHHHHHHHHHcCCCCCCCCCCCCcccc-cccceec
Confidence 32 556655555688764322211234443 3444444
No 62
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.17 E-value=1.2e-05 Score=89.46 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=95.9
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHc---C--CCeEEEecCCCc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECM---G--LPLFRRRIHGST 76 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~al---g--iPl~~~~i~g~~ 76 (742)
|+++++|||+||..+++.+++.|++|++|.--.+... ..-..+.+..+++.+ | ++++..+.....
T Consensus 174 kvlvllSGGiDS~vaa~ll~krG~~V~av~~~~~~~~----------~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~~~~ 243 (371)
T TIGR00342 174 KVLALLSGGIDSPVAAFMMMKRGCRVVAVHFFNEPAA----------SEKAREKVERLANSLNETGGSVKLYVFDFTDVQ 243 (371)
T ss_pred eEEEEecCCchHHHHHHHHHHcCCeEEEEEEeCCCCc----------cHHHHHHHHHHHHHHhhcCCCceEEEEeCHHHH
Confidence 7899999999999999999999999888633222211 012244567777777 3 466666543221
Q ss_pred cc----ccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHh---hcCCeEeeeccccCHHHHH
Q 004613 77 RH----QKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCS---RLGLVSLAYLWKQDQSLLL 149 (742)
Q Consensus 77 ~~----~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~---rlgl~~l~pLW~~d~~~ll 149 (742)
.. ....|.+..+.. -|+..+..+.++. |+++|++|+-+.++.-+.+++... ..++..+.||=+.+..+++
T Consensus 244 ~~i~~~~~~~~~cv~cRr--~m~~~a~~~A~~~-g~~~I~tG~~l~d~asqtl~nl~~i~~~~~~~I~rPLi~~~K~EIi 320 (371)
T TIGR00342 244 EEIIHIIPEGYTCVLCRR--MMYKAASKVAEKE-GCLAIVTGESLGQVASQTLENLRVIQAVSNTPILRPLIGMDKEEII 320 (371)
T ss_pred HHHHhcCCCCceeHhHHH--HHHHHHHHHHHHc-CCCEEEEccChHhhhccHHHHHHHHhccCCCCEEeCCCCCCHHHHH
Confidence 00 011122222222 4566667777776 999999999998775445565433 2357789999999999999
Q ss_pred HHHHHcCC
Q 004613 150 QEMITNGI 157 (742)
Q Consensus 150 ~em~~~G~ 157 (742)
+-.-+.|.
T Consensus 321 ~~a~~iG~ 328 (371)
T TIGR00342 321 ELAKEIGT 328 (371)
T ss_pred HHHHHhCC
Confidence 98888885
No 63
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.14 E-value=9.9e-06 Score=89.70 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=88.2
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
|+++.+|||+||+.+++.+.+.|++|+++..-... + ..+.++.+|+.+|||++...++....+...
T Consensus 7 kVlVa~SGGvDSsv~a~lL~~~G~eV~av~~~~~~----~----------e~~~a~~va~~LGI~~~vvd~~~~f~~~v~ 72 (362)
T PRK14664 7 RVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWG----D----------EPQDARELAARMGIEHYVADERVPFKDTIV 72 (362)
T ss_pred EEEEEEeCCHHHHHHHHHHHHcCCcEEEEEecCcc----h----------hHHHHHHHHHHhCCCEEEEeChHHHHHHHH
Confidence 79999999999999999999999998886442111 0 124588899999999999887632211111
Q ss_pred -----cc-------cCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHH------HH------HHH-HHhhcCC--
Q 004613 82 -----SY-------RMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQR------LR------VES-VCSRLGL-- 134 (742)
Q Consensus 82 -----~Y-------~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr------~r------ve~-vc~rlgl-- 134 (742)
.| ++..+...-. +.+|.+..++. |++.|++|+..-..+. .| -++ ...++.-
T Consensus 73 ~~~~~~~~~G~tpnpC~~Cn~~iK-f~~L~~~A~~~-G~~~IATGHyar~~~~~~~~~l~~g~D~~kDQsyfl~~l~~~~ 150 (362)
T PRK14664 73 KNFIDEYRQGRTPNPCVMCNPLFK-FRMLIEWADKL-GCAWIATGHYSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDI 150 (362)
T ss_pred HHhHHHHHcCCCCCCchhhhHHHH-HHHHHHHHHHc-CCCEEEECCccccccCCCeEEEEEcCCCcchHHHHHHhcCHHH
Confidence 11 1112222222 23455544454 9999999998721100 00 000 0011110
Q ss_pred --eEeeeccccCHHHHHHHHHHcCCcEEEEEEecCCC
Q 004613 135 --VSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGL 169 (742)
Q Consensus 135 --~~l~pLW~~d~~~ll~em~~~G~~a~ii~Va~~gL 169 (742)
..++||.....+++.+-..+.|+..+--|=.+.|+
T Consensus 151 l~~~ifPLg~~~K~evr~~A~~~gl~~~a~k~dSq~i 187 (362)
T PRK14664 151 LRRCIFPLGNYTKQTVREYLREKGYEAKSKEGESMEV 187 (362)
T ss_pred HhHHhccCccCCHHHHHHHHHHcCCCCCCCCCCCCcc
Confidence 24666666666666555556676544444555554
No 64
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.13 E-value=5.2e-05 Score=77.99 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=77.8
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCC-CeEEEecC-----CC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGL-PLFRRRIH-----GS 75 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algi-Pl~~~~i~-----g~ 75 (742)
|+++|+|||.||+..++.+.+.|++|.+|.--+.. + |..-.+.++.+++.+|+ |+..++++ +.
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~~~v~al~~~YGq----------~-~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~ 69 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEGYEVYALTFDYGQ----------R-HRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGG 69 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESSS----------T-TCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSC
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCeEEEEEEECCC----------C-CHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCC
Confidence 78999999999999999999999998877543321 2 34445668999999999 99888887 11
Q ss_pred cccccccccCCC----cchH--------HHHHHHHH-HHHhhCCCceEEEEcccchh---h---HHHH---HH---HHHh
Q 004613 76 TRHQKLSYRMTP----GDEV--------EDMYILLN-EVKRQIPSVTAVSSGAIASD---Y---QRLR---VE---SVCS 130 (742)
Q Consensus 76 ~~~~~~~Y~~~~----~de~--------e~l~~~L~-~vk~~~~~i~~v~~GaI~s~---y---qr~r---ve---~vc~ 130 (742)
+.-....-+... .++. .-++-.+. ....+. +++.|+.|....+ | .+.. ++ +...
T Consensus 70 s~L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~-g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~~~~~ 148 (209)
T PF06508_consen 70 SALTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESL-GAEAIYIGVNAEDASGYPDCRPEFIDAMNRLLNLGE 148 (209)
T ss_dssp HHHHHTT------------------TTHHHHHHHHHHHHHHHH-T-SEEEE---S-STT--GGGSHHHHHHHHHHHHHHH
T ss_pred CcccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHC-CCCEEEEEECcCccCCCCCChHHHHHHHHHHHHhcC
Confidence 100000000000 0111 11222111 222233 8999999998643 2 2222 22 2344
Q ss_pred hcCCeEeeeccccCHHHHHHHHHHcC
Q 004613 131 RLGLVSLAYLWKQDQSLLLQEMITNG 156 (742)
Q Consensus 131 rlgl~~l~pLW~~d~~~ll~em~~~G 156 (742)
..+++..+||++.+..|+++.-.+.|
T Consensus 149 ~~~v~i~~P~~~~tK~eiv~~~~~lg 174 (209)
T PF06508_consen 149 GGPVRIETPLIDLTKAEIVKLGVELG 174 (209)
T ss_dssp TS--EEE-TTTT--HHHHHHHHHHTT
T ss_pred CCCEEEEecCCCCCHHHHHHHHHHcC
Confidence 56899999999999999999988887
No 65
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.13 E-value=1.7e-05 Score=89.06 Aligned_cols=143 Identities=20% Similarity=0.184 Sum_probs=95.9
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcC-----CCeEEEecCCCc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMG-----LPLFRRRIHGST 76 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~alg-----iPl~~~~i~g~~ 76 (742)
|+++++|||.||..+++.+++.|++|.++.-..++.. +.-..+.+...|+.++ +|++.+++....
T Consensus 178 kvvvllSGGiDS~vaa~l~~k~G~~v~av~~~~~~~~----------~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~~~~ 247 (394)
T PRK01565 178 KALLLLSGGIDSPVAGYLAMKRGVEIEAVHFHSPPYT----------SERAKEKVIDLARILAKYGGRIKLHVVPFTEIQ 247 (394)
T ss_pred CEEEEECCChhHHHHHHHHHHCCCEEEEEEEeCCCCC----------cHHHHHHHHHHHHHHHHhcCCCcEEEEECHHHH
Confidence 7899999999999999999999999887643222111 0112244666677774 999988776421
Q ss_pred c----cccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHH---hhcCCeEeeeccccCHHHHH
Q 004613 77 R----HQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVC---SRLGLVSLAYLWKQDQSLLL 149 (742)
Q Consensus 77 ~----~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc---~rlgl~~l~pLW~~d~~~ll 149 (742)
. +....|.+.. --.-|+..+..+.+++ |+++|++|+-+.++--...++.. ...++..+.||=+.+-.++.
T Consensus 248 ~~i~~~~~~~~~~v~--~Rr~~~~~a~~~A~~~-g~~~IvtG~~~~d~~sqt~~~l~~i~~~~~~~V~rPLig~~K~EI~ 324 (394)
T PRK01565 248 EEIKKKVPESYLMTL--MRRFMMRIADKIAEKR-GALAIVTGESLGQVASQTLESMYAINAVTNLPVLRPLIGMDKEEII 324 (394)
T ss_pred HHHhhcCCCceEEEe--HHHHHHHHHHHHHHHc-CCCEEEEccccccccHHHHHHHHHHhhccCcEEEECCCCCCHHHHH
Confidence 0 1011111111 1235667777777776 99999999998665433444443 33467889999999999999
Q ss_pred HHHHHcCC
Q 004613 150 QEMITNGI 157 (742)
Q Consensus 150 ~em~~~G~ 157 (742)
+---+.|.
T Consensus 325 ~lAr~iG~ 332 (394)
T PRK01565 325 EIAKEIGT 332 (394)
T ss_pred HHHHHhCC
Confidence 88888885
No 66
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=98.12 E-value=9.9e-06 Score=82.43 Aligned_cols=143 Identities=22% Similarity=0.190 Sum_probs=72.1
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHc-------CCCeEEEecC
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECM-------GLPLFRRRIH 73 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~al-------giPl~~~~i~ 73 (742)
+|+++|+|||.||.+|++.++++|.+|++|.-..|+-... -..+.++..++.+ .++++..+..
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~krG~~V~~l~f~~~~~~~~----------~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~ 73 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMKRGCEVIALHFDSPPFTGE----------KAREKVEELAEKLSEYSPGHKIRLYVVDFT 73 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHCBT-EEEEEEEE-TTTSSC----------CCHHHHHHHHHHHHCCSTTS-EEEEEECHH
T ss_pred ceEEEEecCCccHHHHHHHHHHCCCEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHhCCCcceeEEEECcH
Confidence 4899999999999999999999999999985543332111 0122334444333 3566666543
Q ss_pred CCccc----ccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhh--HHHHHHH-HHhhcCCeEeeeccccCHH
Q 004613 74 GSTRH----QKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDY--QRLRVES-VCSRLGLVSLAYLWKQDQS 146 (742)
Q Consensus 74 g~~~~----~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~y--qr~rve~-vc~rlgl~~l~pLW~~d~~ 146 (742)
..-.. ....|.+. +--.-|++.-+++.+++ |++++++|+.+-+- |...--+ +-+..++-.+-||=+.|.+
T Consensus 74 ~~~~~i~~~~~~~~~ci--~ckr~M~r~A~~ia~~~-ga~~IvTGEsLGQvaSQTl~nL~~i~~~~~~pIlRPLig~dK~ 150 (197)
T PF02568_consen 74 EVQKEILRGVKERNPCI--DCKRFMYRIAEEIAEEE-GADAIVTGESLGQVASQTLENLRVIESASDLPILRPLIGFDKE 150 (197)
T ss_dssp HHHHHHHHHS-GGGHHH--HHHHHHHHHHHHHHHHT-T--EEE----SSSTTS--HHHHHHHGGG--S-EE-TTTT--HH
T ss_pred HHHHHHHhcCCccchhH--HHHHHHHHHHHHHHHHC-CCCEEEeCchhHHHHhhhHHHHhhhhcccCCceeCCcCCCCHH
Confidence 11100 01111110 11134455556666776 99999999988321 2221112 2233488899999999999
Q ss_pred HHHHHHHHcC
Q 004613 147 LLLQEMITNG 156 (742)
Q Consensus 147 ~ll~em~~~G 156 (742)
|+.+..-+-|
T Consensus 151 EIi~~Ar~Ig 160 (197)
T PF02568_consen 151 EIIEIARKIG 160 (197)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9988776666
No 67
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.08 E-value=9.7e-06 Score=90.62 Aligned_cols=164 Identities=18% Similarity=0.170 Sum_probs=103.0
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCC-CeEEEecCCCccc-
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGL-PLFRRRIHGSTRH- 78 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algi-Pl~~~~i~g~~~~- 78 (742)
|+++.+|||.||.+.++.+.++ |++|+|+.--.+.. --.+.++..|+.+|+ +++...++....+
T Consensus 4 kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~-------------~dle~a~~~A~~lGi~~~~viD~~~ef~~~ 70 (399)
T PRK00509 4 KVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG-------------EELEPIREKALKSGASEIYVEDLREEFVRD 70 (399)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH-------------HHHHHHHHHHHHcCCCeEEEEcCHHHHHHH
Confidence 8999999999999999999998 99998884433211 124558889999998 5777666633221
Q ss_pred -------ccccccCCC----cchHHHHHHHHHHHHhhCCCceEEEEcccc--hhhHHHHHHHHHhhcCCeEeeec--ccc
Q 004613 79 -------QKLSYRMTP----GDEVEDMYILLNEVKRQIPSVTAVSSGAIA--SDYQRLRVESVCSRLGLVSLAYL--WKQ 143 (742)
Q Consensus 79 -------~~~~Y~~~~----~de~e~l~~~L~~vk~~~~~i~~v~~GaI~--s~yqr~rve~vc~rlgl~~l~pL--W~~ 143 (742)
.+..|.+.. ----..++..|.++.+++ |+++|+.|.-. .+-.|.|.=-.+-.-.+..++|| |+.
T Consensus 71 ~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~-G~~~IA~G~t~kGnDq~rf~~g~~al~pel~VisPlre~~~ 149 (399)
T PRK00509 71 YVFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKE-GADAVAHGCTGKGNDQVRFELGIAALAPDLKVIAPWREWDL 149 (399)
T ss_pred hHHHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHc-CCCEEEeCCCcCCCCHHHHHHHHHHhCCCCeeecchhhcCC
Confidence 111132111 011123466666666665 99999999998 54433332212222245778886 444
Q ss_pred -CHHHHHHHHHHcCCcEEEEEEecCCCCCccccCcccc
Q 004613 144 -DQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180 (742)
Q Consensus 144 -d~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~ 180 (742)
..+++.+-.-+.|+.+-..+-..+-.|+ ..+|+++.
T Consensus 150 ~tK~eir~~A~~~Gipv~~~~~~~yS~d~-Nlw~~s~e 186 (399)
T PRK00509 150 KSREELIAYAEEHGIPIPVTKKSPYSIDA-NLWHRSIE 186 (399)
T ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCcccc-cccccccc
Confidence 7778777777889876443333455554 36666553
No 68
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.01 E-value=0.00015 Score=75.70 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=93.8
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCC-eEEEecCC-----
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLP-LFRRRIHG----- 74 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiP-l~~~~i~g----- 74 (742)
-|+++++|||.||.+.++.+.+.|++|.+|.--++.. |..=.+.++.+|+.+|+| +..++++.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~~~~v~alt~dygq~-----------~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~ 70 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQYDEVHCVTFDYGQR-----------HRAEIDVARELALKLGARAHKVLDVTLLNELA 70 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhcCCeEEEEEEEeCCC-----------CHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 0899999999999999999988887877774444321 222345688999999997 87776662
Q ss_pred -Cccccc----cccc---C-CCcc---hHHHHHHHHHH-HHhhCCCceEEEEcccchh---h---HHHHHHH---HH---
Q 004613 75 -STRHQK----LSYR---M-TPGD---EVEDMYILLNE-VKRQIPSVTAVSSGAIASD---Y---QRLRVES---VC--- 129 (742)
Q Consensus 75 -~~~~~~----~~Y~---~-~~~d---e~e~l~~~L~~-vk~~~~~i~~v~~GaI~s~---y---qr~rve~---vc--- 129 (742)
.+.... -.+. . .... --.-++..+.. ..++. |++.|+.|....+ | .+..++. ..
T Consensus 71 ~s~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~-g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~~~ 149 (231)
T PRK11106 71 VSSLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQV-KAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLG 149 (231)
T ss_pred ccccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHc-CCCEEEEeeccCcCCCCCCCCHHHHHHHHHHHHhc
Confidence 111000 0000 0 0000 01345555554 34444 9999999998654 3 2223333 21
Q ss_pred hhcCCeEeeeccccCHHHHHHHHHHcC-CcE
Q 004613 130 SRLGLVSLAYLWKQDQSLLLQEMITNG-INA 159 (742)
Q Consensus 130 ~rlgl~~l~pLW~~d~~~ll~em~~~G-~~a 159 (742)
..-++...+||=+.+..++.+.-.+.| .+.
T Consensus 150 ~~~~i~I~aPl~~lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 150 MAKDIRFETPLMWLNKAETWALADYYGQLDL 180 (231)
T ss_pred cCCCcEEEecCCCCCHHHHHHHHHHcCCccc
Confidence 223588999999999999999988888 544
No 69
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=1.2e-05 Score=77.95 Aligned_cols=60 Identities=30% Similarity=0.400 Sum_probs=48.9
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
|++.+||||||||.+|++.+.+-||+|. |+|. +++-+|+|- ....-|+.+|.|+-...+.
T Consensus 1 m~v~vLfSGGKDSSLaA~iL~klgyev~-LVTv-----nFGv~d~~k-------~A~~tA~~lgF~h~vl~Ld 60 (198)
T COG2117 1 MDVYVLFSGGKDSSLAALILDKLGYEVE-LVTV-----NFGVLDSWK-------YARETAAILGFPHEVLQLD 60 (198)
T ss_pred CceEEEecCCCchhHHHHHHHHhCCCcE-EEEE-----Eeccccchh-------hHHHHHHHhCCCcceeccC
Confidence 8999999999999999999999999965 5554 244567753 4788899999999777664
No 70
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=97.95 E-value=6.5e-05 Score=83.93 Aligned_cols=163 Identities=18% Similarity=0.134 Sum_probs=106.4
Q ss_pred EEEEeeCchHHHHHHHHHHHcCC-cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCC-eEEEecCCCcc---
Q 004613 3 VVALVSGGKDSCYAMMKCIQYGH-QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLP-LFRRRIHGSTR--- 77 (742)
Q Consensus 3 ~val~SGGKDS~~al~~~~~~G~-~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiP-l~~~~i~g~~~--- 77 (742)
+++.+|||.||.+.+..+.++++ +|+|+.--.+... . -.+.++..|+.+|++ ++...++....
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~~------~------~~e~a~~~a~~lG~~~~~viD~~~ef~~~~ 68 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPE------E------EIEAIEEKALKLGAKKHVVVDLREEFVEDY 68 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCcc------h------hHHHHHHHHHHcCCCEEEEeccHHHHHHHh
Confidence 57899999999999999998865 8888855443211 1 125688999999997 87776654221
Q ss_pred -----cccccccCCCc----chHHHHHHHHHHHHhhCCCceEEEEcccch-hhHHHHHHHHHhhc--CCeEeeecccc--
Q 004613 78 -----HQKLSYRMTPG----DEVEDMYILLNEVKRQIPSVTAVSSGAIAS-DYQRLRVESVCSRL--GLVSLAYLWKQ-- 143 (742)
Q Consensus 78 -----~~~~~Y~~~~~----de~e~l~~~L~~vk~~~~~i~~v~~GaI~s-~yqr~rve~vc~rl--gl~~l~pLW~~-- 143 (742)
..+..|.+..- -----++..|.++.+++ |+++|+.|.-.. +.|+ |.+..+..+ .+...+||-..
T Consensus 69 i~~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~-Ga~~VA~G~t~~gnDq~-rf~~~~~al~pel~ViaPlre~~~ 146 (385)
T cd01999 69 IFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEE-GADAVAHGCTGKGNDQV-RFELAFYALNPDLKIIAPWRDWEF 146 (385)
T ss_pred hHHHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCcHH-HHHHHHHhhCCCCEEEcchhhhhc
Confidence 11122222100 01122556566666565 999999999864 3444 555555544 68899998766
Q ss_pred -CHHHHHHHHHHcCCcEEEEEEecCCCCCccccCcccc
Q 004613 144 -DQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180 (742)
Q Consensus 144 -d~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~ 180 (742)
..+++++-..+.|+..-..+-...-.|. ..+|+++.
T Consensus 147 ~sr~ev~~~A~~~Gip~~~~~~~pyS~d~-nl~~~s~e 183 (385)
T cd01999 147 LSREEEIEYAEEHGIPVPVTKKKPYSIDE-NLWGRSIE 183 (385)
T ss_pred CCHHHHHHHHHHcCCCCcccCCCCCccCC-Ccceeecc
Confidence 8889999888999876544333445554 36665553
No 71
>PRK00919 GMP synthase subunit B; Validated
Probab=97.93 E-value=5.8e-05 Score=81.91 Aligned_cols=165 Identities=17% Similarity=0.140 Sum_probs=103.3
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
|+++.+|||+||++.++.+.+. |+++.|+.--++-- ..--.+-+...++.+ +++..+..+......-
T Consensus 23 kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~-----------~~~E~e~a~~~~~~~-i~~~vvd~~e~fl~~L 90 (307)
T PRK00919 23 KAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLM-----------RKGETERIKETFSDM-LNLRIVDAKDRFLDAL 90 (307)
T ss_pred CEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCC-----------CHHHHHHHHHHHhcc-CCcEEEECCHHHHHhc
Confidence 6899999999999999999884 99988874432211 111123355556666 8888776653110000
Q ss_pred ccccCCCc-ch-H-HHHHHHHHHHHhhCCCceEEEEcccchhhHHHH--HH---HH---HhhcCCeEeeeccccCHHHHH
Q 004613 81 LSYRMTPG-DE-V-EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLR--VE---SV---CSRLGLVSLAYLWKQDQSLLL 149 (742)
Q Consensus 81 ~~Y~~~~~-de-~-e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~r--ve---~v---c~rlgl~~l~pLW~~d~~~ll 149 (742)
..+..... .. . ..++..+.+..+++ |++.|+.|.++.+-.-.| +. ++ ....++..+.||......++.
T Consensus 91 ~~v~npe~rr~~c~r~~~~~~~~~A~~~-g~~~Ia~Gtn~dD~iE~r~~iks~~nv~gl~~~~~~~Ii~PL~~l~K~EVr 169 (307)
T PRK00919 91 KGVTDPEEKRKIIGETFIRVFEEVAKEI-GAEYLVQGTIAPDWIESEGGIKSHHNVGGLPEGMVLKIVEPLRDLYKDEVR 169 (307)
T ss_pred cCCCChHHhhhHHHHHHHHHHHHHHHHc-CCCEEEECCCCcchhhccCcccccccccccChhhcCCcccCchhCcHHHHH
Confidence 01100000 00 0 23567777777776 899999999886532221 11 11 123346689999999999998
Q ss_pred HHHHHcCCcEEEE---EEecCCCCCccccCccccc
Q 004613 150 QEMITNGINAITV---KVAAMGLEPGKHLGKEIAF 181 (742)
Q Consensus 150 ~em~~~G~~a~ii---~Va~~gL~~~~~lG~~l~~ 181 (742)
+-..+.|+..-++ +-..-||.- +.+| +++.
T Consensus 170 ~la~~lGLp~~~~~r~p~~~pcLa~-Ri~g-~vt~ 202 (307)
T PRK00919 170 EVARALGLPEEISERMPFPGPGLAV-RIIG-EVTE 202 (307)
T ss_pred HHHHHcCCChhhhCCCCCCCCceeE-Eeec-ccCH
Confidence 8888999987764 345677874 6788 6773
No 72
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=97.93 E-value=7.5e-05 Score=81.30 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=103.8
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
|+++.+|||+||+..++.+.+. |.++.|+.--++-.. ..--.++.+..++.+|||++...++......
T Consensus 18 kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~----------~~E~e~~~~~~~~~lgi~~~vvd~~e~fl~~- 86 (311)
T TIGR00884 18 KVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLR----------KGEAEQVVKTFGDRLGLNLVYVDAKERFLSA- 86 (311)
T ss_pred cEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCC----------hHHHHHHHHHHHHHcCCcEEEEeCcHHHHhh-
Confidence 6899999999999999988775 888888743222110 0001223445567899999988776321110
Q ss_pred ccccCCCcch-----HHHHHHHHHHHHhhCCC-ceEEEEcccchhhHHHHH------H---H---HHhhcCCeEeeeccc
Q 004613 81 LSYRMTPGDE-----VEDMYILLNEVKRQIPS-VTAVSSGAIASDYQRLRV------E---S---VCSRLGLVSLAYLWK 142 (742)
Q Consensus 81 ~~Y~~~~~de-----~e~l~~~L~~vk~~~~~-i~~v~~GaI~s~yqr~rv------e---~---vc~rlgl~~l~pLW~ 142 (742)
+.. .+...+ -..++..+.++.+++ | ++.|+.|.++.+..-++. . + .-....+..+.||-.
T Consensus 87 l~~-v~~p~~~r~~~~~~~~~~~~~~A~~~-g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~~~~~~~ii~PL~~ 164 (311)
T TIGR00884 87 LKG-VTDPEEKRKIIGRVFIEVFEREAKKI-GDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLPEDMKLKLVEPLRE 164 (311)
T ss_pred hcC-CCChHHHHHHHHHHHHHHHHHHHHHC-CCCCEEEECCCChhhhhhccChhHhhhccCccccCChhhcCceEEEccc
Confidence 000 000000 013456777776666 7 999999999866433331 0 1 112234668999999
Q ss_pred cCHHHHHHHHHHcCCcEEEEE--E-ecCCCCCccccCccccc
Q 004613 143 QDQSLLLQEMITNGINAITVK--V-AAMGLEPGKHLGKEIAF 181 (742)
Q Consensus 143 ~d~~~ll~em~~~G~~a~ii~--V-a~~gL~~~~~lG~~l~~ 181 (742)
....++.+--.+.|+.--++- - +.-||.- +.+| +++.
T Consensus 165 l~K~EVr~la~~lgLp~~~~~~~Pf~~p~La~-Ri~g-~it~ 204 (311)
T TIGR00884 165 LFKDEVRKLGKELGLPEEIVWRHPFPGPGLAV-RVLG-EVTK 204 (311)
T ss_pred CcHHHHHHHHHHcCCCHHHhhCCCCCCCceEe-eeec-ccCH
Confidence 999998888888998765543 3 5567874 6889 7773
No 73
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=97.86 E-value=0.00058 Score=72.37 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=88.1
Q ss_pred eEEEEeeCchHHHHHHHHHHHc------CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY------GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGS 75 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~------G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~ 75 (742)
|+++.+||||||+.-++.+.+. |++|+++ ++-. . ++....+.+..+++.+|||++...+...
T Consensus 31 kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av-~vd~-g----------~~~~~~~~~~~~~~~lgI~~~v~~~~~~ 98 (258)
T PRK10696 31 RVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAV-NLDQ-K----------QPGFPEHVLPEYLESLGVPYHIEEQDTY 98 (258)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEE-EecC-C----------CCCCCHHHHHHHHHHhCCCEEEEEecch
Confidence 6899999999998766655331 3566554 3311 1 1111234578899999999988765421
Q ss_pred cccccccccC--CCcch-HHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhc--------------CCeEee
Q 004613 76 TRHQKLSYRM--TPGDE-VEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL--------------GLVSLA 138 (742)
Q Consensus 76 ~~~~~~~Y~~--~~~de-~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rl--------------gl~~l~ 138 (742)
.... ..... ..+.. ..--+.+|.++.+++ |++.|++|+-..+.--+-+-+.+..- ++..+.
T Consensus 99 ~~~~-~~~~~~~~~c~~c~~~R~~~l~~~a~~~-g~~~Ia~GH~~dD~~Et~l~nl~rg~~l~~m~~~~~~~~~~i~iiR 176 (258)
T PRK10696 99 SIVK-EKIPEGKTTCSLCSRLRRGILYRTAREL-GATKIALGHHRDDILETLFLNMFYGGKLKAMPPKLLSDDGKHIVIR 176 (258)
T ss_pred hhhh-hhhccCCChhHHHHHHHHHHHHHHHHHc-CCCEEEEcCchHHHHHHHHHHHHhCCcccccCCeeecCCCceeEEe
Confidence 1000 00000 00100 112234666666665 99999999998775544444443221 245788
Q ss_pred eccccCHHHHHHHHHHcCCcEE
Q 004613 139 YLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 139 pLW~~d~~~ll~em~~~G~~a~ 160 (742)
||......++..-....|+..+
T Consensus 177 PLl~~~k~eI~~y~~~~~lp~~ 198 (258)
T PRK10696 177 PLAYVAEKDIIKFAEAKEFPII 198 (258)
T ss_pred cCccCCHHHHHHHHHHcCCCEe
Confidence 8888888888888888888865
No 74
>PRK08576 hypothetical protein; Provisional
Probab=97.85 E-value=0.00012 Score=82.95 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=84.5
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
++++.|||||||++.++.+.+..-++.++. + ... +.| .-..+.++.+++.+|||++...+.-. ....
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~~V~aV~-i-DTG--------~e~-pet~e~~~~lae~LGI~lii~~v~~~--~~~~ 302 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFGDVTAVY-V-DTG--------YEM-PLTDEYVEKVAEKLGVDLIRAGVDVP--MPIE 302 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCCCCEEEE-e-CCC--------CCC-hHHHHHHHHHHHHcCCCEEEcccCHH--HHhh
Confidence 689999999999999999988754555443 2 111 111 12356799999999999987322100 0000
Q ss_pred ccc-----CCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHH-HHHhh----cCCeEeeeccccCHHHHHHH
Q 004613 82 SYR-----MTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVE-SVCSR----LGLVSLAYLWKQDQSLLLQE 151 (742)
Q Consensus 82 ~Y~-----~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve-~vc~r----lgl~~l~pLW~~d~~~ll~e 151 (742)
.|. +..|. ......|.++.+++ +++.+++|+...+.++.+.. .+-.+ -|...+.||..-...++..=
T Consensus 303 ~~g~p~~~~rcCt--~lK~~pL~raake~-g~~~iatG~R~dES~~R~~~p~v~~~~~~~~~v~rI~PL~~Wte~DV~~Y 379 (438)
T PRK08576 303 KYGMPTHSNRWCT--KLKVEALEEAIREL-EDGLLVVGDRDGESARRRLRPPVVERKTNFGKILVVMPIKFWSGAMVQLY 379 (438)
T ss_pred hcCCCCcccchhh--HHHHHHHHHHHHhC-CCCEEEEEeeHHHhHHhhcCCcccccccCCCCeEEEeChhhCCHHHHHHH
Confidence 111 00111 12234565655555 88999999988776654432 11111 14667788877777777766
Q ss_pred HHHcCCc
Q 004613 152 MITNGIN 158 (742)
Q Consensus 152 m~~~G~~ 158 (742)
+...|+.
T Consensus 380 I~~~gLP 386 (438)
T PRK08576 380 ILMNGLE 386 (438)
T ss_pred HHHhCCC
Confidence 6666544
No 75
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=97.85 E-value=0.00011 Score=79.43 Aligned_cols=163 Identities=16% Similarity=0.109 Sum_probs=101.9
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCC-CeEEEecCCCcccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGL-PLFRRRIHGSTRHQ 79 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algi-Pl~~~~i~g~~~~~ 79 (742)
|+++.+|||+||++.++.+.+. |.++.|+.--++- | ..--.+-+...++.+|+ |++..++......
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~----------~-~~~E~~~~~~~~~~~g~i~~~vvd~~e~fl~- 68 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGL----------L-RKNEAERVEELFSKLLGINLIVVDASERFLS- 68 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCC----------C-ChHHHHHHHHHHHHhCCCcEEEEcCcHHHHH-
Confidence 6899999999999999999884 9887776332111 1 01113346667777776 9998877531110
Q ss_pred cccccCCCcchH-----HHHHHHHHHHHhhCCC-ceEEEEcccchhhHHHHHH--------------HHHhhcCCeEeee
Q 004613 80 KLSYRMTPGDEV-----EDMYILLNEVKRQIPS-VTAVSSGAIASDYQRLRVE--------------SVCSRLGLVSLAY 139 (742)
Q Consensus 80 ~~~Y~~~~~de~-----e~l~~~L~~vk~~~~~-i~~v~~GaI~s~yqr~rve--------------~vc~rlgl~~l~p 139 (742)
.+.+. ++..+. ..++..+.+..+++ | ++.|+.|.++.+-.-++-. ..-...++..+.|
T Consensus 69 ~l~~v-~npe~rr~~~g~~~~~~l~~~A~~~-g~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~a~~~~~vi~P 146 (295)
T cd01997 69 ALKGV-TDPEEKRKIIGETFIEVFEEEAKKL-GLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLPEDMKLKLIEP 146 (295)
T ss_pred HhcCC-CCHHHHHHHhhHHHHHHHHHHHHHc-CCCCEEEECCcccchhhhcccccccccccccccccccchHhhCCcccc
Confidence 01111 010100 24566777776666 7 9999999988654222211 0111234557899
Q ss_pred ccccCHHHHHHHHHHcCCcEEEEEE---ecCCCCCccccCcccc
Q 004613 140 LWKQDQSLLLQEMITNGINAITVKV---AAMGLEPGKHLGKEIA 180 (742)
Q Consensus 140 LW~~d~~~ll~em~~~G~~a~ii~V---a~~gL~~~~~lG~~l~ 180 (742)
|=....+|+.+---+.|+..-++.- ..-||.- +.+| +++
T Consensus 147 L~~l~K~EVR~lar~lGLp~~~~~~~Pfp~p~La~-Ri~g-~it 188 (295)
T cd01997 147 LRDLFKDEVRELGRELGLPEEIVERHPFPGPGLAV-RILG-EVT 188 (295)
T ss_pred cccCcHHHHHHHHHHcCCCchhhCCCCCCCCccee-EEec-CCC
Confidence 9888888888888889998766533 4467774 6788 676
No 76
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.81 E-value=0.0001 Score=84.91 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=87.7
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCccccccc--CHHHHHHHHHHc----CCCeEEEecCCC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTV--GHQIIVSYAECM----GLPLFRRRIHGS 75 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v--~~~~i~~~A~al----giPl~~~~i~g~ 75 (742)
|+++|+|||+||..|++.+++.|++|.+|.--++.. |.. -.+....+++.+ +++++.....+.
T Consensus 179 k~lvllSGGiDS~va~~~~~krG~~v~~l~f~~g~~-----------~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~~~ 247 (482)
T PRK01269 179 DVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGA-----------AHEIGVKQVAHYLWNRYGSSHRVRFISVDFEPV 247 (482)
T ss_pred eEEEEEcCCchHHHHHHHHHHcCCEEEEEEEecCCc-----------hhHHHHHHHHHHHHHHhCccCCceEEEEecHHH
Confidence 789999999999999999999999998873322221 101 023344444444 455776664321
Q ss_pred c--cc--ccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHh---hcCCeEeeeccccCHHHH
Q 004613 76 T--RH--QKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCS---RLGLVSLAYLWKQDQSLL 148 (742)
Q Consensus 76 ~--~~--~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~---rlgl~~l~pLW~~d~~~l 148 (742)
. .. ....|...-.. --|+..-..+.++. |+++|++|+-+.+.--..++|... ..++..+.||.+.|..++
T Consensus 248 ~~~i~~~~~~~~~~~v~r--R~ml~iA~~~A~~~-ga~~IvtG~~l~dvasqtl~nl~~~~~~~~~~v~rPLi~~dK~EI 324 (482)
T PRK01269 248 VGEILEKVDDGQMGVVLK--RMMLRAASKVAERY-GIQALVTGEALGQVSSQTLTNLRLIDNVTDTLILRPLIAMDKEDI 324 (482)
T ss_pred HHHHHhcCCCceecHHHH--HHHHHHHHHHHHHc-CCCEEEECcChHhhhhHHHHHHHhhhhhcCCceecCCcCCCHHHH
Confidence 0 00 01112110000 11222224555555 999999999986653445555332 235888999999999999
Q ss_pred HHHHHHcCC
Q 004613 149 LQEMITNGI 157 (742)
Q Consensus 149 l~em~~~G~ 157 (742)
+..-...|.
T Consensus 325 i~~a~~ig~ 333 (482)
T PRK01269 325 IDLAREIGT 333 (482)
T ss_pred HHHHHHhCC
Confidence 999888884
No 77
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.81 E-value=0.00053 Score=68.64 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=64.8
Q ss_pred eEEEEeeCchHHHHHHHHHHHc----CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY----GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTR 77 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~----G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~ 77 (742)
|+++.+||||||+.-++.+.+. |.++.++.--+.-.. +|. -..+.++.+++.+|||++...+.-...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~-----~s~----~~~~~v~~~~~~~~i~~~~~~~~~~~~ 71 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE-----ESD----EEAEFVEEICEQLGIPLYIVRIDEDRK 71 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC-----CHH----HHHHHHHHHHHHTT-EEEEEE--CHCC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-----ccc----hhHHHHHHHHHhcCCceEEEEeeeeec
Confidence 7899999999998777666543 456665532221110 121 124669999999999999998764110
Q ss_pred cccccccCCCcchHHHH-HHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcC
Q 004613 78 HQKLSYRMTPGDEVEDM-YILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLG 133 (742)
Q Consensus 78 ~~~~~Y~~~~~de~e~l-~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlg 133 (742)
...+ .+..--.+ +.+|.++..++ |++.|++|+-+.+.--+-+-+++..-|
T Consensus 72 -~~~~----~e~~aR~~Ry~~l~~~a~~~-g~~~i~~GHh~dD~~ET~l~~l~rg~~ 122 (182)
T PF01171_consen 72 -KGSN----IEECARELRYQFLREIAKEE-GCNKIALGHHLDDQAETFLMNLLRGSG 122 (182)
T ss_dssp -TTST----CHHHHHHHHHHHHHHHHHTT-T-CEEE---BHHHHHHHHHHHHHHT--
T ss_pred -ccCC----HHHHHHHHHHHHHHHhhhcc-cccceeecCcCCccHHHHHHHHHHhcc
Confidence 0000 11111122 35777777776 999999999998877777777766433
No 78
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.00093 Score=71.66 Aligned_cols=148 Identities=17% Similarity=0.210 Sum_probs=91.4
Q ss_pred eEEEEeeCchHHHHHHHHHHHcC--CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYG--HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQ 79 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G--~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~ 79 (742)
|+++.+||||||++.++.+.+.+ .++.++ ++.+.- .+ +-....+.++.+++.+|+|++...+.......
T Consensus 23 ~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~-~Vd~~~------~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 93 (298)
T COG0037 23 KILVAVSGGKDSLALLHLLKELGRRIEVEAV-HVDHGL------RG--YSDQEAELVEKLCEKLGIPLIVERVTDDLGRE 93 (298)
T ss_pred eEEEEeCCChHHHHHHHHHHHhccCceEEEE-EecCCC------CC--ccchHHHHHHHHHHHhCCceEEEEEEeecccc
Confidence 68899999999999999999887 354444 332211 11 12345677999999999999988776433211
Q ss_pred cccccCCCcchH-HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcC---------------C-eEeeeccc
Q 004613 80 KLSYRMTPGDEV-EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLG---------------L-VSLAYLWK 142 (742)
Q Consensus 80 ~~~Y~~~~~de~-e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlg---------------l-~~l~pLW~ 142 (742)
... ..+.+.-- .--+.+|.+..+++ |++.|++|+=+.+.--+-.-++...-+ . .-+-||..
T Consensus 94 ~~~-~~~~c~~c~~~R~~~l~~~a~~~-g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l~~~~~~~~~~~~~~~iRPL~~ 171 (298)
T COG0037 94 TLD-GKSICAACRRLRRGLLYKIAKEL-GADKIATGHHLDDQAETFLMNLLRGSGLRGLRGMPPKRPFEGGLLIIRPLLY 171 (298)
T ss_pred ccC-CCChhHHHHHHHHHHHHHHHHHc-CCCeEEeccCcHHHHHHHHHHHHcCcHhhHHhhCCcccccCCCCeeeeeccc
Confidence 100 00011111 12345677777776 999999999887766554444433332 1 24556666
Q ss_pred cCHHHHHHHHHHcCCcEE
Q 004613 143 QDQSLLLQEMITNGINAI 160 (742)
Q Consensus 143 ~d~~~ll~em~~~G~~a~ 160 (742)
....++..-.-..|+..+
T Consensus 172 ~~~~ei~~~~~~~~l~~~ 189 (298)
T COG0037 172 VREKEIELYAKEKGLPYI 189 (298)
T ss_pred CCHHHHHHHHHHcCCCEe
Confidence 666666666666666433
No 79
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=97.68 E-value=0.00033 Score=63.57 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=55.1
Q ss_pred EEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccccc
Q 004613 3 VVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLS 82 (742)
Q Consensus 3 ~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~ 82 (742)
+++.+||||||.+.++.+.+.|.++.++..-++. |. -.+....+++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~-------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTVDHGI------------SP-RLEDAKEIAKE-------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCCCEEEEEEcCCC------------cc-cHHHHHHHHHH--------------------
Confidence 4789999999999999999998887665332221 11 12223334443
Q ss_pred ccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHH
Q 004613 83 YRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESV 128 (742)
Q Consensus 83 Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~v 128 (742)
..+..+.+..+++ +++.|++|+.+++...++.-+.
T Consensus 48 ----------~r~~~~~~~a~~~-g~~~i~~g~~~~D~~~~~~~~~ 82 (103)
T cd01986 48 ----------AREEAAKRIAKEK-GAETIATGTRRDDVANRALGLT 82 (103)
T ss_pred ----------HHHHHHHHHHHHc-CCCEEEEcCCcchHHHHHHHHH
Confidence 2344455555454 8999999999999988886543
No 80
>PRK00074 guaA GMP synthase; Reviewed
Probab=97.65 E-value=0.00015 Score=84.06 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=101.4
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
|+++.+|||+||.+.++.+.+. |+++.|+.-=++-. -..--.++.+..|+.+|+|++.+.++......-
T Consensus 217 ~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~----------~~~e~~~~~~~~a~~lgi~~~vvd~~~~f~~~l 286 (511)
T PRK00074 217 KVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLL----------RKNEAEQVMEMFREHFGLNLIHVDASDRFLSAL 286 (511)
T ss_pred cEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCC----------CHHHHHHHHHHHHHHcCCcEEEEccHHHHHHhc
Confidence 6899999999999999999887 88888774321110 000012334456789999999887653211100
Q ss_pred ccccCCCcchH-----HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHH-------------HHhhcCCeEeeeccc
Q 004613 81 LSYRMTPGDEV-----EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVES-------------VCSRLGLVSLAYLWK 142 (742)
Q Consensus 81 ~~Y~~~~~de~-----e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~-------------vc~rlgl~~l~pLW~ 142 (742)
... +..++- ..++.+|.++.+++.+++.+++|..+.+..-++.-+ +-....+..+.||-.
T Consensus 287 ~g~--~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~~~~~ik~~~~l~Gl~~~~~~~ii~PL~~ 364 (511)
T PRK00074 287 AGV--TDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTKKAATIKSHHNVGGLPEDMKLKLVEPLRE 364 (511)
T ss_pred cCC--CCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchhhhhcCCCCccccccccCccCcChhHhcccccchhh
Confidence 001 111100 224567777766654799999999886654333111 001112457889988
Q ss_pred cCHHHHHHHHHHcCCcEEEE---EEecCCCCCccccCcccc
Q 004613 143 QDQSLLLQEMITNGINAITV---KVAAMGLEPGKHLGKEIA 180 (742)
Q Consensus 143 ~d~~~ll~em~~~G~~a~ii---~Va~~gL~~~~~lG~~l~ 180 (742)
...+|+.+-..+.|+...++ --...||.- +.+| +++
T Consensus 365 l~K~EIr~~a~~~gLp~~~~~~~p~p~~~la~-Ri~g-~it 403 (511)
T PRK00074 365 LFKDEVRKLGLELGLPEEIVYRHPFPGPGLAI-RILG-EVT 403 (511)
T ss_pred cCHHHHHHHHHHcCCCHHHhCCCCCCCCceee-EEec-ccC
Confidence 88888887777888886665 225567764 5778 465
No 81
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=97.65 E-value=0.00035 Score=67.54 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=85.0
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCC---cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGH---QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRH 78 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~---~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~ 78 (742)
++++.+||||||+..++.+.+.+. ++.++ ++ ... +.|. --.+.++..++.+|+|+...........
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v-~~-dtg--------~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 69 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVI-FL-DTG--------YEFP-ETYEFVDRVAERYGLPLVVVRPPDSPAE 69 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEE-Ee-CCC--------CCCH-HHHHHHHHHHHHhCCCeEEECCCccHHH
Confidence 589999999999999999988765 45433 32 111 0011 1245688899999999988866533210
Q ss_pred c----cccc-cCCCc--chHHHH-HHHHHHHHhhCCCceEEEEcccchhhHHHHHHHH----HhhcCCeEeeeccccCHH
Q 004613 79 Q----KLSY-RMTPG--DEVEDM-YILLNEVKRQIPSVTAVSSGAIASDYQRLRVESV----CSRLGLVSLAYLWKQDQS 146 (742)
Q Consensus 79 ~----~~~Y-~~~~~--de~e~l-~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~v----c~rlgl~~l~pLW~~d~~ 146 (742)
. ...+ ..... .-...+ ...+.+..++. +...++.|.=..+-.+++..+. -..-+...+.||..-..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~-~~~~~~~G~r~de~~~r~~~~~~~~~~~~~~~~~~~Pl~~w~~~ 148 (173)
T cd01713 70 GLALGLKGFPLPSPDRRWCCRILKVEPLRRALKEL-GVVAWITGIRRDESARRALLPVVWTDDGKGGILKVNPLLDWTYE 148 (173)
T ss_pred HHHHhhhccCCccccHHHhhccccchHHHHHHHhc-CCeEEEEEeccccchhhhhCccccccCCCCCcEEEcchhcCCHH
Confidence 0 0000 00000 000111 12333333333 7889999998877665554322 223467788998887778
Q ss_pred HHHHHHHHcCC
Q 004613 147 LLLQEMITNGI 157 (742)
Q Consensus 147 ~ll~em~~~G~ 157 (742)
++.+-+...|+
T Consensus 149 di~~~~~~~~l 159 (173)
T cd01713 149 DVWAYLARHGL 159 (173)
T ss_pred HHHHHHHHcCC
Confidence 87776666664
No 82
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=97.63 E-value=0.00045 Score=66.93 Aligned_cols=59 Identities=25% Similarity=0.196 Sum_probs=40.2
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCC-cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEec
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGH-QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRI 72 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~-~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i 72 (742)
.+++++||||||.+.++.+.+.+. ++.++ ++ +..- .+....+.++.+|+. |+|+....+
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v-~~-~~g~---------~~~~~~~~~~~~a~~-g~~~~~~~~ 62 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAV-TV-DNGF---------NSEEAVKNIKNLIKK-GLDLDHLVI 62 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEE-Ee-CCCC---------CCHHHHHHHHHHHHh-CCCeEEEec
Confidence 478999999999999999988764 55443 22 2110 011134568889999 888876654
No 83
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=97.62 E-value=0.00099 Score=68.77 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=92.1
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC------C
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH------G 74 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~------g 74 (742)
||.|+++|||-||+-.++.+++.|++|.+|---+-.. |..=.+..+.+|+.+|+|+..+.++ |
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQr-----------h~~Ele~A~~iak~lgv~~~iid~~~~~~~~~ 71 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQR-----------HRKELEAAKELAKKLGVPHHIIDVDLLGEIGG 71 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHhcCCEEEEEEeeCCCC-----------cHHHHHHHHHHHHHcCCCeEEechhHHhhcCC
Confidence 6999999999999999999999999988874333211 3344567999999999999877654 2
Q ss_pred CcccccccccCCCc--ch---------HHHHHHHHHHH-HhhCCCceEEEEcccchhhH------HHHH------HHHHh
Q 004613 75 STRHQKLSYRMTPG--DE---------VEDMYILLNEV-KRQIPSVTAVSSGAIASDYQ------RLRV------ESVCS 130 (742)
Q Consensus 75 ~~~~~~~~Y~~~~~--de---------~e~l~~~L~~v-k~~~~~i~~v~~GaI~s~yq------r~rv------e~vc~ 130 (742)
.+...+..+-+... .+ -.-++-.+.-. .+.. |++.|+.|.-..+|- ...+ -+.+.
T Consensus 72 saLtd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~-g~~~I~~Gv~~~D~sgYPDcrpefi~a~~~~~~l~~ 150 (222)
T COG0603 72 SALTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEAL-GADAIIIGVNEEDFSGYPDCRPEFIEALNEALNLGT 150 (222)
T ss_pred CcCcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHc-CCCeEEEEecccccCCCCCCCHHHHHHHHHHHHhhc
Confidence 22211111111111 00 01222222222 2233 899999998664332 2222 24566
Q ss_pred hcCCe-EeeeccccCHHHHHHHHHHcC
Q 004613 131 RLGLV-SLAYLWKQDQSLLLQEMITNG 156 (742)
Q Consensus 131 rlgl~-~l~pLW~~d~~~ll~em~~~G 156 (742)
..|.. ..+||=..+-.++.+.-.+.|
T Consensus 151 ~~~~~~i~aPl~~l~Ka~iv~l~~elg 177 (222)
T COG0603 151 EKGVRIIHAPLMELTKAEIVKLADELG 177 (222)
T ss_pred cCCccEEeCCeeeccHHHHHHHHHHhC
Confidence 66777 589998888888888888888
No 84
>PRK05370 argininosuccinate synthase; Validated
Probab=97.31 E-value=0.0025 Score=71.76 Aligned_cols=165 Identities=18% Similarity=0.041 Sum_probs=113.0
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEE-EEeecCCCCCCccCcccccccCHHHHHHHHHHcCC-CeEEEecCCCccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVAL-ANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGL-PLFRRRIHGSTRH 78 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L-~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algi-Pl~~~~i~g~~~~ 78 (742)
.||+..+|||=|+.+.+.++.++|++|+|+ +++=.++ .++ .+.++.-|..+|. +++..+.+....+
T Consensus 12 ~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~--~ed----------~~~i~~kA~~~GA~~~~viDlr~eF~e 79 (447)
T PRK05370 12 QRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPD--EDD----------YDAIPRRAMEYGAENARLIDCRAQLVA 79 (447)
T ss_pred CEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCC--ccc----------hHHHHHHHHHhCCCEEEEeccHHHHHH
Confidence 389999999999999999999999999998 5552211 011 2458888999998 7888887755432
Q ss_pred c-------ccc--------ccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccc-hhhHHHHHHHHHhhc--CCeEeeec
Q 004613 79 Q-------KLS--------YRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIA-SDYQRLRVESVCSRL--GLVSLAYL 140 (742)
Q Consensus 79 ~-------~~~--------Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~-s~yqr~rve~vc~rl--gl~~l~pL 140 (742)
. +.- |.-...-..--..+.|-++.++. |+++|+-|+=- =+.| -|+|..+..| .|+.++|.
T Consensus 80 ~~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~-ga~aIAHG~TGKGNDQ-vRFE~~~~aL~P~l~ViaPw 157 (447)
T PRK05370 80 EGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKED-GVNIWGDGSTYKGNDI-ERFYRYGLLTNPELKIYKPW 157 (447)
T ss_pred HHHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHh-CCcEEEEcCCCCCCch-HHHHHHHHHhCCCCeEecch
Confidence 1 111 21111001112233444555555 99999999874 3445 5778888877 78899993
Q ss_pred --ccc-----CHHHHHHHHHHcCCcEEEEEEecCCCCCccccCcccc
Q 004613 141 --WKQ-----DQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180 (742)
Q Consensus 141 --W~~-----d~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~ 180 (742)
|.. .+++.++-..+.|+.+-..+-..+-.|+ ..+|+++.
T Consensus 158 Rd~~~~~~f~sR~e~i~Ya~~hGIpv~~~~~~~ySiD~-NLwg~S~E 203 (447)
T PRK05370 158 LDQDFIDELGGRAEMSEFLIAHGFDYKMSVEKAYSTDS-NMLGATHE 203 (447)
T ss_pred hhhhcccccCCHHHHHHHHHHcCCCCCccCCCCccCcc-Chheeeec
Confidence 555 6888898889999998765555566775 47777765
No 85
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.22 E-value=0.0037 Score=67.92 Aligned_cols=106 Identities=17% Similarity=0.116 Sum_probs=59.6
Q ss_pred eEEEEeeCchHHHHHHHHHHHcC----CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYG----HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTR 77 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G----~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~ 77 (742)
+++++|||||||+.-++.+.+.. .++. ++++-.. +.|.. -.+.++..|+.+|+||+...... ..
T Consensus 29 ~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~-vl~iDTG---------~~FpE-t~ef~d~~a~~~gl~l~v~~~~~-~i 96 (301)
T PRK05253 29 NPVMLYSIGKDSSVMLHLARKAFYPGKLPFP-LLHVDTG---------WKFPE-MIEFRDRRAKELGLELIVHSNPE-GI 96 (301)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhcccCCCee-EEEEeCC---------CCCHH-HHHHHHHHHHHhCCCEEEEeChH-HH
Confidence 57899999999999999888763 3333 3333111 11221 14568889999999998875431 11
Q ss_pred ccccc-ccCCCcchHHHHH-HHHHHHHhhCCCceEEEEcccchhh
Q 004613 78 HQKLS-YRMTPGDEVEDMY-ILLNEVKRQIPSVTAVSSGAIASDY 120 (742)
Q Consensus 78 ~~~~~-Y~~~~~de~e~l~-~~L~~vk~~~~~i~~v~~GaI~s~y 120 (742)
..+.. +....+.--..+. ..|++..+++ +++++++|.=..+-
T Consensus 97 ~~g~~~~~~~~~~cC~~lK~~pL~~al~e~-g~da~~~G~RrDE~ 140 (301)
T PRK05253 97 ARGINPFRHGSAKHTNAMKTEGLKQALEKY-GFDAAFGGARRDEE 140 (301)
T ss_pred hcCCCCCCCChHHHHHHHHHHHHHHHHHHc-CCCEEEeccccchh
Confidence 11110 1000000111121 2444444555 89999999876543
No 86
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=97.21 E-value=0.0019 Score=71.37 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=42.8
Q ss_pred EEEEeeCchHHHHHHHHH-HHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 3 VVALVSGGKDSCYAMMKC-IQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 3 ~val~SGGKDS~~al~~~-~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
+++.+||||||++.++.+ .+.|.++.++ ++ +.. + .-..+.+-++..++.+|+|++...+.
T Consensus 62 ~iV~lSGGkDSs~la~ll~~~~gl~~l~v-t~-~~~--------~-~~e~~~~n~~~~~~~lgvd~~~i~~d 122 (343)
T TIGR03573 62 CIIGVSGGKDSTYQAHVLKKKLGLNPLLV-TV-DPG--------W-NTELGVKNLNNLIKKLGFDLHTITIN 122 (343)
T ss_pred EEEECCCCHHHHHHHHHHHHHhCCceEEE-EE-CCC--------C-CCHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 789999999999999777 4568775333 33 221 1 12235567899999999999988764
No 87
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.13 E-value=0.0013 Score=73.46 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=96.6
Q ss_pred EEEeeCchHHHHHHHHHHHcC-CcEEEE-EEeecCCCCCCccCcccccccCHHHHHHHHHHcCC-CeEEEecCCCcccc-
Q 004613 4 VALVSGGKDSCYAMMKCIQYG-HQIVAL-ANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGL-PLFRRRIHGSTRHQ- 79 (742)
Q Consensus 4 val~SGGKDS~~al~~~~~~G-~~vv~L-~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algi-Pl~~~~i~g~~~~~- 79 (742)
|+.+|||=|+++.+.++.++| ++|+|+ +++=-.+ ...+.++.-|..+|. +++..+.+......
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~-------------~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~ 67 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPD-------------EDLEAIEEKALKLGASKHIVVDARDEFAEDY 67 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST--------------S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHT
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcH-------------HHHHHHHHHHHhcCCceeeecchHHHHHHHH
Confidence 678999999999999999999 999998 4442110 124568888999997 99999887554311
Q ss_pred -------cccccC----CCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcC--CeEeeec--cccC
Q 004613 80 -------KLSYRM----TPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLG--LVSLAYL--WKQD 144 (742)
Q Consensus 80 -------~~~Y~~----~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlg--l~~l~pL--W~~d 144 (742)
+..|.. ...=.---+.+.+-++.++. |+++|+-|+=-.---..|+|..+..|+ |+.++|. |...
T Consensus 68 i~~aI~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~-ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~viaP~Rd~~~~ 146 (388)
T PF00764_consen 68 IFPAIKANALYEGRYPLSTSLARPLIAKKLVEVAREE-GADAVAHGCTGKGNDQVRFELSIRALAPELKVIAPWRDWEFS 146 (388)
T ss_dssp HHHHHHTT--BTTTB--CCCCHHHHHHHHHHHHHHHH-T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-GGGHHHHH
T ss_pred HHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHc-CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEecccchhhhh
Confidence 112221 11111112233344444444 999999999764333478899999887 9999996 5556
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCCccccCcccc
Q 004613 145 QSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180 (742)
Q Consensus 145 ~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~ 180 (742)
+++.++-+-+.|+.+-..+-...-.|+ ..+|+++.
T Consensus 147 R~~~i~ya~~~gIpv~~~~~~~yS~D~-Nlwg~s~E 181 (388)
T PF00764_consen 147 REEEIEYAKKHGIPVPVTKKKPYSIDE-NLWGRSIE 181 (388)
T ss_dssp HHHHHHHHHHTT----SS---SSEEEE-ESSEEEEE
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCccc-cccccccc
Confidence 778888888999998877655566675 47787776
No 88
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=96.79 E-value=0.006 Score=64.12 Aligned_cols=141 Identities=13% Similarity=0.042 Sum_probs=75.4
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
++++.|||||||+..++.+.+.+.++.++.. ... ++..--.+.++..++.+|+++...........+..
T Consensus 42 ~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfi--DTG---------~~~pet~e~~~~~~~~~gl~l~v~~~~~~~~~~~~ 110 (241)
T PRK02090 42 RLALVSSFGAEDAVLLHLVAQVDPDIPVIFL--DTG---------YLFPETYRFIDELTERLLLNLKVYRPDASAAEQEA 110 (241)
T ss_pred CEEEEecCCHHHHHHHHHHHhcCCCCcEEEe--cCC---------CCCHHHHHHHHHHHHHhCCCEEEECCCccHHHHHH
Confidence 5789999999999999999998777665532 111 11111345688899999999987754322111000
Q ss_pred cc----c---CC--CcchHHHHHHHHHHHHhhCCCceEEEEcccchh-hHHHHHHHHHhhcCCeEeeeccccCHHHHHHH
Q 004613 82 SY----R---MT--PGDEVEDMYILLNEVKRQIPSVTAVSSGAIASD-YQRLRVESVCSRLGLVSLAYLWKQDQSLLLQE 151 (742)
Q Consensus 82 ~Y----~---~~--~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~-yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~e 151 (742)
.+ . .. .+-.+-+ ...|++..+++ .++++|.=..+ ..|.....+..+-|..-+.||+.-..+++..=
T Consensus 111 ~~~~~~~~~~~~~~~cc~~~K-~~pl~~~~~~~---~~~itG~R~~es~~R~~~~~~~~~~~~~rv~Pi~~Wt~~dV~~Y 186 (241)
T PRK02090 111 RYGGLWEQSVEDRDECCRIRK-VEPLNRALAGL---DAWITGLRREQSGTRANLPVLEIDGGRFKINPLADWTNEDVWAY 186 (241)
T ss_pred HcCCCccccccCHHHHHHHHh-hHHHHHHHhcC---CCeEEEechhhCchhccCceeeecCCeEEEeehhhCCHHHHHHH
Confidence 01 0 00 0001111 12334433333 33788866533 22221111111116677778777777776665
Q ss_pred HHHcCC
Q 004613 152 MITNGI 157 (742)
Q Consensus 152 m~~~G~ 157 (742)
+...|+
T Consensus 187 i~~~~l 192 (241)
T PRK02090 187 LKEHDL 192 (241)
T ss_pred HHHcCC
Confidence 555544
No 89
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=96.71 E-value=0.018 Score=62.24 Aligned_cols=103 Identities=16% Similarity=0.065 Sum_probs=58.3
Q ss_pred EEEEeeCchHHHHHHHHHHHcCCc---EEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccc
Q 004613 3 VVALVSGGKDSCYAMMKCIQYGHQ---IVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQ 79 (742)
Q Consensus 3 ~val~SGGKDS~~al~~~~~~G~~---vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~ 79 (742)
.+++|||||||+..++.+.+..++ -+-++++ ... +-|.. -.+.++..|+.+|++|+........ ..
T Consensus 22 ~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~I-DTG--------~~F~E-t~efrd~~a~~~gl~l~v~~~~~~~-~~ 90 (294)
T TIGR02039 22 PVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHV-DTG--------WKFRE-MIAFRDHMVAKYGLRLIVHSNEEGI-AD 90 (294)
T ss_pred cEEEEecChHHHHHHHHHHHHhcccCCCeEEEEE-ecC--------CCCHH-HHHHHHHHHHHhCCCEEEEechhhh-hc
Confidence 467899999999999999887432 1233333 111 11333 3566888999999999887543110 00
Q ss_pred cc-cccCCCcchH-HHHH-HHHHHHHhhCCCceEEEEcccch
Q 004613 80 KL-SYRMTPGDEV-EDMY-ILLNEVKRQIPSVTAVSSGAIAS 118 (742)
Q Consensus 80 ~~-~Y~~~~~de~-e~l~-~~L~~vk~~~~~i~~v~~GaI~s 118 (742)
+. .+.. ..+.. ..+. ..|++..+++ +++++++|+=..
T Consensus 91 g~~~~~~-~~~~~c~vlK~~pL~~al~e~-g~da~itG~RRD 130 (294)
T TIGR02039 91 GINPFTE-GSALHTDIMKTEALRQALDKN-QFDAAFGGARRD 130 (294)
T ss_pred Ccccccc-ChHHHhhHHHHHHHHHHHHHc-CCCEEEecCChh
Confidence 11 0110 00101 1111 2455555555 899999997543
No 90
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=96.71 E-value=0.006 Score=63.88 Aligned_cols=106 Identities=23% Similarity=0.206 Sum_probs=73.2
Q ss_pred eEEEEeeCchHHHHHHHHH-HHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCc----
Q 004613 2 KVVALVSGGKDSCYAMMKC-IQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGST---- 76 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~-~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~---- 76 (742)
|+++-||||+||++=+..| ...|-+|+|+--..|--. .. -.+-++.+|+-+||-|-.+++..-.
T Consensus 19 kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p----------~~-e~e~A~~~A~~iGi~H~~i~~~~~~~~~~ 87 (269)
T COG1606 19 KVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIP----------RR-EIEEAKNIAKEIGIRHEFIKMNRMDPEFK 87 (269)
T ss_pred eEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCC----------hh-hhhHHHHHHHHhCCcceeeehhhcchhhc
Confidence 7899999999999988888 455877777644434321 10 1345788999999998877765322
Q ss_pred -ccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHH
Q 004613 77 -RHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLR 124 (742)
Q Consensus 77 -~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~r 124 (742)
...+.=|-| ..+++..|.+...+. |.+.|+-|.=+|+-+..|
T Consensus 88 ~n~~~rCY~C-----K~~v~~~l~~~a~~~-Gyd~V~dGtNasDl~~~R 130 (269)
T COG1606 88 ENPENRCYLC-----KRAVYSTLVEEAEKR-GYDVVADGTNASDLFDYR 130 (269)
T ss_pred cCCCCcchHH-----HHHHHHHHHHHHHHc-CCCEEEeCCcHHHhcCCC
Confidence 112222333 246777777777665 999999999999877643
No 91
>PLN02347 GMP synthetase
Probab=96.68 E-value=0.0078 Score=70.30 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=96.5
Q ss_pred eEEEEeeCchHHHHHHHHHHH-cCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccc-
Q 004613 2 KVVALVSGGKDSCYAMMKCIQ-YGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQ- 79 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~-~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~- 79 (742)
|+++.+|||+||++.+..|.+ .|.++.|+.--.+-- -..--.++.+.+|+.+|||+..+.++......
T Consensus 231 ~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~----------~~~E~~~~~~~~a~~lgi~~~vvd~~e~fl~~l 300 (536)
T PLN02347 231 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL----------RYKEQERVMETFKRDLHLPVTCVDASERFLSKL 300 (536)
T ss_pred eEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCC----------ChhHHHHHHHHHHHHcCCcEEEEeCcHHHHhhC
Confidence 689999999999999999998 588888874322211 11112355677999999999999876522111
Q ss_pred -cc------cccCCCcchHHHHHHHH-HHHHhhC-CCceEEEEcccchhhHH--HHH----------------HHHHhhc
Q 004613 80 -KL------SYRMTPGDEVEDMYILL-NEVKRQI-PSVTAVSSGAIASDYQR--LRV----------------ESVCSRL 132 (742)
Q Consensus 80 -~~------~Y~~~~~de~e~l~~~L-~~vk~~~-~~i~~v~~GaI~s~yqr--~rv----------------e~vc~rl 132 (742)
+. -|-+ +++.-+++..+ ++++.++ .+++.++-|-++++..- .|- -.+-+..
T Consensus 301 ~~~~~pe~k~~~~--~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~hhn~~~l~~~~ 378 (536)
T PLN02347 301 KGVTDPEKKRKII--GAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDM 378 (536)
T ss_pred CCCCChHHhcchh--CchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCCCCCccccccceeeecccccChHHH
Confidence 11 1111 22233444433 3555433 13488999998876542 110 0011222
Q ss_pred CCeEeeeccccCHHHHHHHHHHcCCcEEEEEE---ecCCCCCccccCccccc
Q 004613 133 GLVSLAYLWKQDQSLLLQEMITNGINAITVKV---AAMGLEPGKHLGKEIAF 181 (742)
Q Consensus 133 gl~~l~pLW~~d~~~ll~em~~~G~~a~ii~V---a~~gL~~~~~lG~~l~~ 181 (742)
....++||=..--.++-+---+.|+.--|+.- ..-||-- +.+|..+++
T Consensus 379 ~~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~~p~p~p~La~-Ri~g~~~~~ 429 (536)
T PLN02347 379 KLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFPGPGLAV-RVLGDVTEG 429 (536)
T ss_pred HCccccchhhCcHHHHHHHHHHcCCCHHHhcCCCcCCCCEEe-eeCCccCCH
Confidence 34567777665555554444567876444432 2356663 568877663
No 92
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=96.67 E-value=0.0052 Score=64.89 Aligned_cols=62 Identities=26% Similarity=0.173 Sum_probs=43.4
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCC-cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGH-QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~-~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
++++.+|||+||+..+..|.+.+. +++++... |... . + .--.+.++..|+.+|+|++...+.
T Consensus 24 ~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~-~~~~-~----~----~~e~~~a~~~a~~lgi~~~~i~i~ 86 (250)
T TIGR00552 24 GVVLGLSGGIDSAVVAALCVEALGEQNHALLLP-HSVQ-T----P----EQDVQDALALAEPLGINYKNIDIA 86 (250)
T ss_pred CEEEECCCcHHHHHHHHHHHHhhCCceEEEEEC-CccC-C----C----HHHHHHHHHHHHHhCCeEEEEcch
Confidence 688899999999999988887644 66665332 2110 0 0 012456889999999999888654
No 93
>PRK13980 NAD synthetase; Provisional
Probab=96.64 E-value=0.008 Score=64.04 Aligned_cols=60 Identities=28% Similarity=0.288 Sum_probs=43.2
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-C-CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEec
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-G-HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRI 72 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G-~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i 72 (742)
++++.+|||+||...++.|.+. | .+|.++. +|... + ..--.+.++.+|+.+|+|+..+.+
T Consensus 32 ~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~--~~~~~------~---~~~~~~~a~~la~~lgi~~~~i~i 93 (265)
T PRK13980 32 GVVLGLSGGIDSAVVAYLAVKALGKENVLALL--MPSSV------S---PPEDLEDAELVAEDLGIEYKVIEI 93 (265)
T ss_pred cEEEECCCCHHHHHHHHHHHHHhCccceEEEE--eeCCC------C---CHHHHHHHHHHHHHhCCCeEEEEC
Confidence 6899999999999999988875 4 6776652 23221 0 111245688899999999988865
No 94
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=96.51 E-value=0.0036 Score=61.25 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=68.0
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
+++++|||||||...++.+.+.+.++. ++.. .... +. ---.+.++..++.+|+++..............
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~~-vv~~-dtg~---e~------p~t~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 69 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKVP-VVFI-DTGY---EF------PETYEFVDELAKRYGIPIIVYRPPETFEQRFI 69 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTCE-EEEE-E-ST---B-------HHHHHHHHHHHHHTTCEEEEEETTSHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCCc-EEEE-ecCc---cC------HHHHHHHHHHHhhhhhhhhhcccccchhhccc
Confidence 579999999999999999999987753 2222 1111 10 01135588889999999666544432111111
Q ss_pred ccc-CCC-----cchHHHHHHHHHHHHhhCCCceEEEEcccchhh-HHHHHHHHHhhcC---CeEeeeccccCHHHHHHH
Q 004613 82 SYR-MTP-----GDEVEDMYILLNEVKRQIPSVTAVSSGAIASDY-QRLRVESVCSRLG---LVSLAYLWKQDQSLLLQE 151 (742)
Q Consensus 82 ~Y~-~~~-----~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~y-qr~rve~vc~rlg---l~~l~pLW~~d~~~ll~e 151 (742)
.+. +.. +...-+. +-+++..+++ +...++.|-=..+- .|........+-+ ...++||..-..+++..-
T Consensus 70 ~~~~~~~~~~~~c~~~~K~-~p~~~~~~~~-~~~~~~~G~R~~Es~~R~~~~~~~~~~~~~~~~~~~Pi~~wt~~dV~~y 147 (174)
T PF01507_consen 70 LYGWPSKLWRWWCCSILKV-KPLRRALKEY-GKDVWIIGVRADESPRRAKLPMFEFDEDNPKIIRVYPIADWTEEDVWDY 147 (174)
T ss_dssp HHHHSTTHHHHHHHHHHTH-HHHHHHHHHT-TESEEE----TTSTTGCCGSSSEEEETTTTSEEEE-TTTT--HHHHHHH
T ss_pred cccccchhhhHHHHHHHHH-HHHhhhhcch-HHHHHHHHHHhhchhhhhhchhhhcccccCCEEEEEehhhCCHHHHHHH
Confidence 111 000 0011111 1233333444 66788888755432 3332211111112 345667777777777766
Q ss_pred HHHcCCc
Q 004613 152 MITNGIN 158 (742)
Q Consensus 152 m~~~G~~ 158 (742)
+-..|++
T Consensus 148 i~~~~l~ 154 (174)
T PF01507_consen 148 IKANGLP 154 (174)
T ss_dssp HHHHT--
T ss_pred HHHhcCC
Confidence 6665553
No 95
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=96.43 E-value=0.054 Score=61.92 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=60.5
Q ss_pred eEEEEeeCchHHHHHHHHHHH-----cCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQ-----YGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGST 76 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~-----~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~ 76 (742)
|+++.+|||+||+.-++.+.+ .|++++++.-=+.-.. +| .--.+.++.+|+.+|||++...+....
T Consensus 17 ~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~-----~s----~~~~~~~~~~~~~l~i~~~~~~~~~~~ 87 (436)
T PRK10660 17 QILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP-----NA----DSWVKHCEQVCQQWQVPLVVERVQLDQ 87 (436)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc-----ch----HHHHHHHHHHHHHcCCcEEEEEEeccC
Confidence 689999999999876665542 3678776522111100 11 001245788999999999887764211
Q ss_pred ccccccccCCCcchH--HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhc
Q 004613 77 RHQKLSYRMTPGDEV--EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL 132 (742)
Q Consensus 77 ~~~~~~Y~~~~~de~--e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rl 132 (742)
.. . .-++. +.=|.++.+..+.. +.|++|+=..+--.+-.-+.+..-
T Consensus 88 ~~----~---~~e~~AR~~Ry~~~~~~~~~~---~~l~~aHh~DDq~ET~L~~L~rG~ 135 (436)
T PRK10660 88 RG----L---GIEAAARQARYQAFARTLLPG---EVLVTAQHLDDQCETFLLALKRGS 135 (436)
T ss_pred CC----C---CHHHHHHHHHHHHHHHHHHhC---CEEEEcCchHHHHHHHHHHHHcCC
Confidence 00 0 00111 11224555555442 456666655444444455555533
No 96
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.012 Score=62.98 Aligned_cols=66 Identities=23% Similarity=0.252 Sum_probs=48.9
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCH---HHHHHHHHHcCCCeEEEec
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGH---QIIVSYAECMGLPLFRRRI 72 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~---~~i~~~A~algiPl~~~~i 72 (742)
+|++.+|||-||..|++++.++||+|.++.- ..= +.+|++--|-++. .-+...++.|+||+.++..
T Consensus 7 ~VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M-~nW----d~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 7 RVVVAMSGGVDSSVAARLLAARGYNVTGVFM-KNW----DSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred eEEEEecCCchHHHHHHHHHhcCCCeeEEee-ecc----ccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 7999999999999999999999999988742 211 2234433344433 3477889999999988754
No 97
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0058 Score=67.36 Aligned_cols=163 Identities=20% Similarity=0.211 Sum_probs=113.1
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcC-CcEEEE-EEeecCCCCCCccCcccccccCHHHHHHHHHHcCCC-eEEEecCCCcc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYG-HQIVAL-ANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLP-LFRRRIHGSTR 77 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G-~~vv~L-~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiP-l~~~~i~g~~~ 77 (742)
+|+|..+|||=|-..++-++.++| ++|+++ +++=-++ +++ +.++.=|..+|.- .|.++.+..+.
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~e---ed~----------~~i~eKA~~~Ga~~~~viD~reeF~ 71 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPE---EDL----------DAIREKALELGAEEAYVIDAREEFV 71 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCCh---HHh----------HHHHHHHHHhCCceEEEeecHHHHH
Confidence 379999999999999999999998 999987 5553221 223 3378888888875 88888776554
Q ss_pred cc--------cccccCCCcchHHHH-----HHHHHHHHhhCCCceEEEEcccc-hhhHHHHHHHHHh--hcCCeEeeec-
Q 004613 78 HQ--------KLSYRMTPGDEVEDM-----YILLNEVKRQIPSVTAVSSGAIA-SDYQRLRVESVCS--RLGLVSLAYL- 140 (742)
Q Consensus 78 ~~--------~~~Y~~~~~de~e~l-----~~~L~~vk~~~~~i~~v~~GaI~-s~yqr~rve~vc~--rlgl~~l~pL- 140 (742)
+. +..|+...-- .-.| .+.|-++.++. |+++|+-|.-- =+.| .|+|.... .-+|+.++|.
T Consensus 72 ~~yi~~~i~ana~Yeg~YpL-~TalaRPLIak~lVe~A~k~-ga~avaHGcTGKGNDQ-vRFe~~~~al~p~lkiiAP~R 148 (403)
T COG0137 72 EDYIFPAIKANALYEGVYPL-GTALARPLIAKKLVEAAKKE-GADAVAHGCTGKGNDQ-VRFELAILALNPDLKIIAPWR 148 (403)
T ss_pred HHHHHHHHHhhceeeccccc-cchhhHHHHHHHHHHHHHHc-CCCEEEecCCCCCCce-eeeeeehhhhCCCcEEEeehh
Confidence 21 2223210000 0012 22333444555 99999999876 2344 56676655 5689999994
Q ss_pred -cccCHHHHHHHHHHcCCcEEEEEEecCCCCCccccCcccc
Q 004613 141 -WKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180 (742)
Q Consensus 141 -W~~d~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~ 180 (742)
|...++++++=+.+.|+..-..+=..+-.|. ..||+++.
T Consensus 149 ew~~~R~~~i~Ya~~~gipv~~~~~kpySiD~-Nlwg~S~E 188 (403)
T COG0137 149 EWNLTREEEIEYAEEHGIPVKATKEKPYSIDE-NLWGRSIE 188 (403)
T ss_pred hhccChHHHHHHHHHcCCCccccCCCCcccch-hhhccccc
Confidence 8888999999999999999888556677886 58888776
No 98
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.33 E-value=0.014 Score=63.55 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=65.9
Q ss_pred eEEEEeeCchHHHHHHHHHHHc----CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY----GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTR 77 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~----G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~ 77 (742)
+.+++|||||||+.-++.+.+. +.++ -++++ ... +-|... .+..+..|+-+|++|+...-. ...
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~-pvl~V-DTG--------~~FpEt-~efrD~~a~~~gl~Liv~~~~-~~~ 106 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPF-PLLHV-DTT--------WKFREM-IDFRDRRAKELGLDLVVHHNP-DGI 106 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCe-eEEEe-CCC--------CCCHHH-HHHHHHHHHHhCCcEEEecCh-HHH
Confidence 4578999999999999999886 2232 33333 111 222221 455788999999999876432 111
Q ss_pred cccccccCCCcchHHHHH--HHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeee
Q 004613 78 HQKLSYRMTPGDEVEDMY--ILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAY 139 (742)
Q Consensus 78 ~~~~~Y~~~~~de~e~l~--~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~p 139 (742)
..+........+..-++. ..|++..+++ +++++++|+=- ..-+.|..+..+.+
T Consensus 107 ~~G~~~~~~~~~~~c~~~Kv~pL~raL~~~-g~da~itG~RR--------dE~~sRak~~ifs~ 161 (312)
T PRK12563 107 ARGIVPFRHGSALHTDVAKTQGLKQALDHH-GFDAAIGGARR--------DEEKSRAKERIFSF 161 (312)
T ss_pred HhCCCcccCCHHHHhhHHhHHHHHHHHHhc-CCCEEEEecCH--------HHhhhhccCceecc
Confidence 111111001111122222 2455555555 89999999632 33467777666654
No 99
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=96.27 E-value=0.015 Score=61.25 Aligned_cols=61 Identities=26% Similarity=0.307 Sum_probs=44.1
Q ss_pred eEEEEeeCchHHHHHHHHHHHcC--CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYG--HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G--~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
++++.+|||+||+..+..|.+.. .+|.++ ++|... + ...-.+.+..+|+.+|+|+..+.+.
T Consensus 25 ~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~--~~~~~~------~---~~~~~~~a~~~a~~lgi~~~~i~i~ 87 (248)
T cd00553 25 GVVLGLSGGIDSALVAALAVRALGRENVLAL--FMPSRY------S---SEETREDAKELAEALGIEHVNIDID 87 (248)
T ss_pred CEEEeCCCcHHHHHHHHHHHHHhCcccEEEE--ECCCCC------C---CHHHHHHHHHHHHHhCCeEEEeccH
Confidence 68999999999999999988764 566554 333321 0 1223456889999999999888653
No 100
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.21 E-value=0.019 Score=49.91 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=24.0
Q ss_pred EEEEeeCchHHHHHHHHHHHc---CCcEEEEE
Q 004613 3 VVALVSGGKDSCYAMMKCIQY---GHQIVALA 31 (742)
Q Consensus 3 ~val~SGGKDS~~al~~~~~~---G~~vv~L~ 31 (742)
+++.+|||+||...++++.+. +.++.++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~ 32 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALV 32 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 478999999999999999988 66665553
No 101
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=96.02 E-value=0.039 Score=61.61 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=31.3
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPAD 37 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~ 37 (742)
|+++|+|||-||=.|.|.+++.|.+|.+|.-..|+.
T Consensus 177 k~l~LlSGGIDSPVA~~l~mkRG~~v~~v~f~~~p~ 212 (383)
T COG0301 177 KVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPPY 212 (383)
T ss_pred cEEEEEeCCCChHHHHHHHHhcCCEEEEEEEcCCCC
Confidence 789999999999999999999999998885544443
No 102
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=95.89 E-value=0.034 Score=58.49 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=62.1
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCc-EEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQ-IVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~-vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
++.+++|||.||..-+..+.+.+.+ +.+....++... .+ -.+.++..|+.+|+++..+.+........
T Consensus 17 ~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~-~~----------e~~~a~~~a~~l~~~~~~~~~~~~~~~~~ 85 (269)
T cd01991 17 PVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEG-SD----------EREYARRVAEHLGTEHHEVEFTPADLLAA 85 (269)
T ss_pred ceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCC-CC----------hHHHHHHHHHHhCCcceEEEcCHHHHHHH
Confidence 5789999999999999888887754 444322222211 11 14568999999999998887754322111
Q ss_pred cc---c---cCCCcchHHHHHHHHHHHHhhCCCceEEEEcccc
Q 004613 81 LS---Y---RMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIA 117 (742)
Q Consensus 81 ~~---Y---~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~ 117 (742)
.. + .+...-..-.++.+.+.+++. +++.+.+|+-.
T Consensus 86 ~~~~~~~~~~p~~~~~~~~~~~l~~~a~~~--~~~v~l~G~g~ 126 (269)
T cd01991 86 LPDVIWELDEPFADSSAIPLYLLSRLARKH--GIKVVLSGEGA 126 (269)
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHh--CCEEEEecCCc
Confidence 00 0 111111122344455555554 78999999855
No 103
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=95.81 E-value=0.037 Score=56.84 Aligned_cols=141 Identities=15% Similarity=0.102 Sum_probs=74.9
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
++++++||||||+..++.+.+.+-++.++ +......+.+ . .+.++..++.+|+.+....-.-....+..
T Consensus 15 ~~~~s~SgGKDS~Vll~L~~~~~~~~~v~--f~DTg~efpe--------T-~efv~~~~~~~~l~i~~~~~~~~~~~~~~ 83 (212)
T TIGR00434 15 HLVYSTSFGIQGAVLLDLVSKISPDIPVI--FLDTGYHFPE--------T-YELIDELTERYPLNIKVYKPDLSLAEQAA 83 (212)
T ss_pred CEEEEecCCHHHHHHHHHHHhcCCCCcEE--EecCCCCCHH--------H-HHHHHHHHHHhCCceEEECCchhHHHHHH
Confidence 68999999999999999998877565544 2222111111 1 23477788889988766643211111000
Q ss_pred c-----c--cCCCcch---HHHHHHHHHHHHhhCCCceEEEEcccchh-hHHHHHH--HHHhhcCCeEeeeccccCHHHH
Q 004613 82 S-----Y--RMTPGDE---VEDMYILLNEVKRQIPSVTAVSSGAIASD-YQRLRVE--SVCSRLGLVSLAYLWKQDQSLL 148 (742)
Q Consensus 82 ~-----Y--~~~~~de---~e~l~~~L~~vk~~~~~i~~v~~GaI~s~-yqr~rve--~vc~rlgl~~l~pLW~~d~~~l 148 (742)
. | ....+.. ++.|.+.|+ ++ ++.++++|-=..+ ..|.... +.-..-|..-+.||+.=+..++
T Consensus 84 ~~g~~~~~~~~~~cc~~~K~~pl~~~l~----~~-~~~~~i~GiR~~Es~~R~~~~~~~~~~~~~~~~v~PI~dWt~~dV 158 (212)
T TIGR00434 84 KYGDKLWEQDPNKYDYLRKVEPMHRALK----EL-HASAWFTGLRRDQGPSRANLSILNIDEKFGILKVLPLIDWTWKDV 158 (212)
T ss_pred hcCCCccccChHHHhhHHhHHHHHHHHH----hc-CCcEEEEecccccCccccCCceeeecCCCCcEEEeehhhCCHHHH
Confidence 0 1 0001111 223333333 23 4567777755433 2232211 1111225667888888777777
Q ss_pred HHHHHHcCCc
Q 004613 149 LQEMITNGIN 158 (742)
Q Consensus 149 l~em~~~G~~ 158 (742)
.+=+.+.|+.
T Consensus 159 w~Yi~~~~lp 168 (212)
T TIGR00434 159 YQYIDAHNLP 168 (212)
T ss_pred HHHHHHcCCC
Confidence 7777666554
No 104
>PRK02628 nadE NAD synthetase; Reviewed
Probab=95.09 E-value=0.087 Score=63.55 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=44.6
Q ss_pred eEEEEeeCchHHHHHHHHHHHc----C---CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY----G---HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~----G---~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
++++-+||||||+++++.|.+. | .+|.++ +| |...+ -....+.++.+|+.||+|+..+.|.
T Consensus 363 ~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v-~m-p~~~s---------s~~s~~~a~~la~~LGi~~~~i~I~ 430 (679)
T PRK02628 363 KVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAY-TM-PGFAT---------TDRTKNNAVALMKALGVTAREIDIR 430 (679)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEE-EC-CCCCC---------CHHHHHHHHHHHHHhCCeEEEEEcH
Confidence 6899999999999988877765 4 556544 33 64311 1123567899999999999999873
No 105
>PRK13794 hypothetical protein; Provisional
Probab=94.97 E-value=0.17 Score=58.51 Aligned_cols=144 Identities=14% Similarity=0.111 Sum_probs=74.6
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
++++.|||||||+..++.+.+. |.++.++.. ... +-| .--.+.++..++.+|++++..... ......
T Consensus 249 ~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfi--DTG--------~ef-pet~e~i~~~~~~~gl~i~~~~~~-~f~~~~ 316 (479)
T PRK13794 249 PVTVAYSGGKDSLATLLLALKALGINFPVLFN--DTG--------LEF-PETLENVEDVEKHYGLEIIRTKSE-EFWEKL 316 (479)
T ss_pred CEEEEecchHHHHHHHHHHHHHhCCCeEEEEE--ECC--------CCC-hHHHHHHHHHHHhcCCcEEEEchH-HHHHHH
Confidence 5789999999999999988887 677655432 111 001 112455888899999999877532 110001
Q ss_pred ccccC-C----CcchHHHHHHHHHHHHhhCCCceEEEEcccch-hhHHHHHHHHHhh---cCCeEeeeccccCHHHHHHH
Q 004613 81 LSYRM-T----PGDEVEDMYILLNEVKRQIPSVTAVSSGAIAS-DYQRLRVESVCSR---LGLVSLAYLWKQDQSLLLQE 151 (742)
Q Consensus 81 ~~Y~~-~----~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s-~yqr~rve~vc~r---lgl~~l~pLW~~d~~~ll~e 151 (742)
..|.. + .+-.+-++..+-+.+++.+++....+.|-=.. ...|.....+-.. -|...++||..=...++..=
T Consensus 317 ~~~G~P~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~~Ra~~~~~~~~~~~~~~~~~~PI~~Wt~~dVw~Y 396 (479)
T PRK13794 317 EEYGPPARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESFNRSKKPRIWRNPYIKKQILAAPILHWTAMHVWIY 396 (479)
T ss_pred HhcCCCCCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccHhHhcCcccccccCcCCcEEEechHhCCHHHHHHH
Confidence 11211 1 12222222222223333333444556665431 1233322221111 24556788877777776665
Q ss_pred HHHcCC
Q 004613 152 MITNGI 157 (742)
Q Consensus 152 m~~~G~ 157 (742)
+...|+
T Consensus 397 i~~~~l 402 (479)
T PRK13794 397 LFREKA 402 (479)
T ss_pred HHHcCC
Confidence 555543
No 106
>PRK13795 hypothetical protein; Provisional
Probab=94.88 E-value=0.22 Score=59.61 Aligned_cols=146 Identities=13% Similarity=0.067 Sum_probs=79.4
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
++++.+||||||+..++.+.+.+.++.++.. ... +.|. --.+.++.+++.+|++++.............
T Consensus 245 ~v~Va~SGGKDS~vll~L~~~a~~~~~vvfi--DTg--------~efp-et~e~v~~~~~~~gi~i~~~~~~~~f~~~~~ 313 (636)
T PRK13795 245 PVSVSFSGGKDSLVVLDLAREALKDFKAFFN--NTG--------LEFP-ETVENVKEVAEEYGIELIEADAGDAFWRAVE 313 (636)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCCCcEEEEE--eCC--------CCCH-HHHHHHHHHHHHcCCcEEEEcccHhHHHhhh
Confidence 4789999999999999999988766443322 111 1111 1235688899999999988755311111111
Q ss_pred cccCC-----CcchHHHHHHHHHHHHhhCCCceEEEEcccchh-hHHHHHHHHHhh---cCCeEeeeccccCHHHHHHHH
Q 004613 82 SYRMT-----PGDEVEDMYILLNEVKRQIPSVTAVSSGAIASD-YQRLRVESVCSR---LGLVSLAYLWKQDQSLLLQEM 152 (742)
Q Consensus 82 ~Y~~~-----~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~-yqr~rve~vc~r---lgl~~l~pLW~~d~~~ll~em 152 (742)
.|.+. ++-.+-++..+-+.+++.++.....+.|-=..+ .+|.....+-.. -|...++||..-...++..=+
T Consensus 314 ~~g~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~~R~~~~~~~~~~~~~~~~~~~PI~~Wt~~dVw~YI 393 (636)
T PRK13795 314 KFGPPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESFSRAKSPRVWRNPWVPNQIGASPIQDWTALEVWLYI 393 (636)
T ss_pred ccCCCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchHHHhhCcccccCCCCCCcEEEechHhCCHHHHHHHH
Confidence 12111 122233333344444554443333444543322 344433322111 255678898777778777766
Q ss_pred HHcCCc
Q 004613 153 ITNGIN 158 (742)
Q Consensus 153 ~~~G~~ 158 (742)
...|+.
T Consensus 394 ~~~~lp 399 (636)
T PRK13795 394 FWRKLP 399 (636)
T ss_pred HHhCCC
Confidence 666554
No 107
>PRK08557 hypothetical protein; Provisional
Probab=94.48 E-value=0.081 Score=60.08 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=40.3
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEe
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRR 71 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~ 71 (742)
.++++|||||||+..++.+.+.+.++.++ ++ ... +.| .--.+.++..++.+|+|++...
T Consensus 183 ~i~vsfSGGKDS~vlL~L~~~~~~~i~vv-fv-DTG--------~ef-pET~e~ve~v~~~ygl~i~v~~ 241 (417)
T PRK08557 183 AINASFSGGKDSSVSTLLAKEVIPDLEVI-FI-DTG--------LEY-PETINYVKDFAKKYDLNLDTLD 241 (417)
T ss_pred EEEEEcCCcHHHHHHHHHHHHhCCCCEEE-EE-ECC--------CCC-HHHHHHHHHHHHHhCCCEEEEe
Confidence 36799999999999998888877554443 22 111 011 1124568899999999998763
No 108
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=94.40 E-value=0.019 Score=58.63 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=65.6
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEe-----cCCC
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRR-----IHGS 75 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~-----i~g~ 75 (742)
||+++-+|||-||.-+..-+...|..|..--...|..- + .-.+..++.+|.-+--.+ |..+
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~g~~v~p~t~~Lp~~i-----r---------~n~~~l~~~lg~~p~yveedl~~i~kG 126 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWAGFTVDPGTAILPDHI-----R---------RNKEELETLLGEVPEYVEEDLEDIEKG 126 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhhceeeccccccCCHHH-----h---------HHHHHHHHHHccCHHHHHHHHHHHHhh
Confidence 68999999999999999999998955544333334221 0 013334555554321110 0000
Q ss_pred cccccccccCCCcchHHHHH-H-HHHHHHhhCCCceEEEEcccchh-hHHHHHHHHHhhcCCeEeeecc
Q 004613 76 TRHQKLSYRMTPGDEVEDMY-I-LLNEVKRQIPSVTAVSSGAIASD-YQRLRVESVCSRLGLVSLAYLW 141 (742)
Q Consensus 76 ~~~~~~~Y~~~~~de~e~l~-~-~L~~vk~~~~~i~~v~~GaI~s~-yqr~rve~vc~rlgl~~l~pLW 141 (742)
+.| +.--.|-.+ -.+. . ....+++. +++.|+|||.+|. ||--+.|+=--+++|-+++-|=
T Consensus 127 aln-GRfhpCGRC---h~~I~~~V~~k~re~--di~~vafGDlLs~G~~svy~eD~i~rlnlPAflAlt 189 (255)
T COG1365 127 ALN-GRFHPCGRC---HSMIENAVMDKAREL--DIDVVAFGDLLSTGYGSVYREDGIFRLNLPAFLALT 189 (255)
T ss_pred hcc-CCCCCcchH---HHHHHHHHHHHHHhc--CCeEEEEcccccccccceeccCCEEEEccHHHHhhC
Confidence 111 000011111 1122 2 22334433 8999999999974 6766667666677776666553
No 109
>PRK00876 nadE NAD synthetase; Reviewed
Probab=94.32 E-value=0.086 Score=57.99 Aligned_cols=61 Identities=30% Similarity=0.415 Sum_probs=44.2
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CC-cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GH-QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~-~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
++++.+|||+||...+..|.+. |. ++.++. +|... + ..--.+.++..|+.+|++++.+.+.
T Consensus 35 ~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~--~~~~~------s---~~~e~~~A~~lA~~LGi~~~~i~i~ 97 (326)
T PRK00876 35 GVVLGLSGGIDSSVTAALCVRALGKERVYGLL--MPERD------S---SPESLRLGREVAEHLGVEYVVEDIT 97 (326)
T ss_pred CEEEEccCCHHHHHHHHHHHHhhCCCcEEEEE--ecCCC------C---ChHHHHHHHHHHHHcCCCEEEEECc
Confidence 5899999999999999999875 63 455553 34321 0 1112456899999999999998775
No 110
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=94.30 E-value=0.14 Score=52.82 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=41.8
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHG 74 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g 74 (742)
++.+.+|||-||.+-+..|.+.+...+..+|...++...+ -...++..|+.+|+|+....+..
T Consensus 19 ~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~----------e~~~a~~va~~~~~~~~~~~~~~ 81 (255)
T PF00733_consen 19 PIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYD----------EREYARKVARHLGLEHHEIELDP 81 (255)
T ss_dssp EEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC------------HHHHHHHHHHHHT-EEEEEEE-H
T ss_pred CEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcch----------hHHHHHHHhcccccccceeeech
Confidence 5789999999999999988884444455556544432111 24568999999999998887754
No 111
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=94.19 E-value=0.67 Score=49.08 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEE-ecCCCcccccccccCCCcch
Q 004613 12 DSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRR-RIHGSTRHQKLSYRMTPGDE 90 (742)
Q Consensus 12 DS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~-~i~g~~~~~~~~Y~~~~~de 90 (742)
||.-.+..|.+.|-+-+-|..-..... =|+...+++..-+..+||++.. .-+++ +-.| ..+|
T Consensus 9 ~s~~~a~~A~~~GAdRiELc~~L~~GG----------lTPS~g~i~~~~~~~~ipv~vMIRPR~g----dF~Y---s~~E 71 (248)
T PRK11572 9 YSMECALTAQQAGADRIELCAAPKEGG----------LTPSLGVLKSVRERVTIPVHPIIRPRGG----DFCY---SDGE 71 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEccCcCCCC----------cCCCHHHHHHHHHhcCCCeEEEEecCCC----CCCC---CHHH
Confidence 456667778888855555533222221 2455677888888899998744 22222 2346 3689
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcccchh--hHHHHHHHHHhhcC-CeEee---eccccCHHHHHHHHHHcCCcEEEEEE
Q 004613 91 VEDMYILLNEVKRQIPSVTAVSSGAIASD--YQRLRVESVCSRLG-LVSLA---YLWKQDQSLLLQEMITNGINAITVKV 164 (742)
Q Consensus 91 ~e~l~~~L~~vk~~~~~i~~v~~GaI~s~--yqr~rve~vc~rlg-l~~l~---pLW~~d~~~ll~em~~~G~~a~ii~V 164 (742)
++.|.+-++.+++. |+++||+|++-.+ -.+.+.+.+.+..+ +..-+ +=.-.|+.+-|+.+++.||+-++++
T Consensus 72 ~~~M~~di~~~~~~--GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTS- 148 (248)
T PRK11572 72 FAAMLEDIATVREL--GFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTS- 148 (248)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECC-
Confidence 99999999999886 9999999999854 23445555444433 32221 0001388899999999999998875
Q ss_pred ecCCCCCccccCccccchhHHHHHhhhhc
Q 004613 165 AAMGLEPGKHLGKEIAFLDPYLHKLKESY 193 (742)
Q Consensus 165 a~~gL~~~~~lG~~l~~~~~~l~~l~~~~ 193 (742)
|-.+ ...+-.+.|.+|.+.+
T Consensus 149 ---Gg~~------~a~~g~~~L~~lv~~a 168 (248)
T PRK11572 149 ---GQQQ------DAEQGLSLIMELIAAS 168 (248)
T ss_pred ---CCCC------CHHHHHHHHHHHHHhc
Confidence 3222 1223356677777643
No 112
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=94.17 E-value=0.3 Score=51.54 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=44.4
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-C-CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-G-HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G-~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
++|+.+|||.||.+++..|.+. | .+|.|+ +.|... + ..-..+-+...|+.+|+++..+++.
T Consensus 20 ~vVvglSGGiDSav~A~La~~Alg~~~v~~v--~mp~~~------~---~~~~~~~A~~la~~lgi~~~~i~i~ 82 (242)
T PF02540_consen 20 GVVVGLSGGIDSAVVAALAVKALGPDNVLAV--IMPSGF------S---SEEDIEDAKELAEKLGIEYIVIDID 82 (242)
T ss_dssp EEEEEETSSHHHHHHHHHHHHHHGGGEEEEE--EEESST------S---THHHHHHHHHHHHHHTSEEEEEESH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhhhcccccc--cccccc------C---ChHHHHHHHHHHHHhCCCeeccchH
Confidence 6899999999999999988875 4 456655 445321 0 1122455888999999999999773
No 113
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=93.84 E-value=0.23 Score=56.90 Aligned_cols=109 Identities=18% Similarity=0.155 Sum_probs=57.7
Q ss_pred EEEEeeCchHHHHHHHHHHHcC--------CcEEEEEEeecCCCCCCccCcccccccCH--HHHHHHHHHcCCCeEEEec
Q 004613 3 VVALVSGGKDSCYAMMKCIQYG--------HQIVALANLMPADDSVDELDSYMYQTVGH--QIIVSYAECMGLPLFRRRI 72 (742)
Q Consensus 3 ~val~SGGKDS~~al~~~~~~G--------~~vv~L~~~~p~~~~~~~~dS~m~q~v~~--~~i~~~A~algiPl~~~~i 72 (742)
+++.|||||||+..+..+.+.. +..+.+++. +... | -..|++.+.. +-+...|+..|+|+....+
T Consensus 16 ~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~---DTgv-E-~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~v 90 (447)
T TIGR03183 16 WVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVIST---DTLV-E-NPIVAAWVNASLERMQEAAQDQGLPIEPHRL 90 (447)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEEC---cCCC-c-cHHHHHHHHHHHHHHHHHHHHcCCCeEEEec
Confidence 6899999999999998766541 122333222 2111 1 1223333322 3356677888999876544
Q ss_pred CCCccc------cccccc--------CCCcchHHHHHHHHHHHHhhCCCceEEEEcccc
Q 004613 73 HGSTRH------QKLSYR--------MTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIA 117 (742)
Q Consensus 73 ~g~~~~------~~~~Y~--------~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~ 117 (742)
.-.... .+..|+ ||..--++-+.++|+++.+++ +-..++.|-=.
T Consensus 91 ~P~~~~~Fwv~liGrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~-g~~v~vlGvR~ 148 (447)
T TIGR03183 91 TPEIKDTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAAN-GEVILVLGTRK 148 (447)
T ss_pred CCCcchHHHHHHhcCCCCCCCCCCCccChHHHhhHHHHHHHHHHhcc-CCeEEEEEeeh
Confidence 221100 012232 232334456666777766555 44556666544
No 114
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=93.44 E-value=1 Score=46.24 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCcEEEEE-EeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEE-ecCCCcccccccccCCCcc
Q 004613 12 DSCYAMMKCIQYGHQIVALA-NLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRR-RIHGSTRHQKLSYRMTPGD 89 (742)
Q Consensus 12 DS~~al~~~~~~G~~vv~L~-~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~-~i~g~~~~~~~~Y~~~~~d 89 (742)
+|.-.+..+.+.|-+-+-|- ++.... =|+...+++..-+..++|++.. .-++. +-.| ..+
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~l~~GG-----------lTPS~g~i~~~~~~~~ipv~vMIRpr~g----dF~Y---s~~ 69 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSNLEVGG-----------LTPSLGLIRQAREAVDIPVHVMIRPRGG----DFVY---SDE 69 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBTGGGT------------B---HHHHHHHHHHTTSEEEEE--SSSS-----S------HH
T ss_pred CCHHHHHHHHHcCCCEEEECCCccCCC-----------cCcCHHHHHHHHhhcCCceEEEECCCCC----CccC---CHH
Confidence 34556677788885545453 332211 2556677888888999998654 22222 2345 478
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEEcccchhh--HHHHHHHHHhhc-CCeEeeecccc------CHHHHHHHHHHcCCcEE
Q 004613 90 EVEDMYILLNEVKRQIPSVTAVSSGAIASDY--QRLRVESVCSRL-GLVSLAYLWKQ------DQSLLLQEMITNGINAI 160 (742)
Q Consensus 90 e~e~l~~~L~~vk~~~~~i~~v~~GaI~s~y--qr~rve~vc~rl-gl~~l~pLW~~------d~~~ll~em~~~G~~a~ 160 (742)
|++.|.+-++.+++. |++++|+|++-.+. -+.+.+++.+.. |+...+ +| |+.+-++.+++.||+-+
T Consensus 70 E~~~M~~dI~~~~~~--GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tF---HRAfD~~~d~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 70 EIEIMKEDIRMLREL--GADGFVFGALTEDGEIDEEALEELIEAAGGMPVTF---HRAFDEVPDPEEALEQLIELGFDRV 144 (201)
T ss_dssp HHHHHHHHHHHHHHT--T-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE----GGGGGSSTHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHHc--CCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEE---eCcHHHhCCHHHHHHHHHhcCCCEE
Confidence 999999999999886 99999999997543 344555555544 454444 54 78999999999999988
Q ss_pred EEE
Q 004613 161 TVK 163 (742)
Q Consensus 161 ii~ 163 (742)
+++
T Consensus 145 LTS 147 (201)
T PF03932_consen 145 LTS 147 (201)
T ss_dssp EES
T ss_pred ECC
Confidence 874
No 115
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.28 E-value=0.45 Score=50.74 Aligned_cols=62 Identities=24% Similarity=0.184 Sum_probs=42.5
Q ss_pred EEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCC
Q 004613 3 VVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGS 75 (742)
Q Consensus 3 ~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~ 75 (742)
+++++||||||...++.+.+...++-.+.. .. -+-| -.-.+.++..++.+|+++........
T Consensus 42 ~~~~~S~Gkds~V~l~L~~k~~~~~~vif~--DT--------g~~f-~Et~~~~d~~~~~~~~~l~~~~~~~~ 103 (261)
T COG0175 42 VVVSFSGGKDSTVLLHLAAKAFPDFPVIFL--DT--------GYHF-PETYEFRDRLAEEYGLDLKVYRPDDE 103 (261)
T ss_pred eEEEecCchhHHHHHHHHHHhcCCCcEEEE--eC--------CCcC-HHHHHHHHHHHHHcCCeEEEecCccc
Confidence 589999999999999999988776333321 00 1111 12357789999999999877654433
No 116
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=92.17 E-value=0.67 Score=53.35 Aligned_cols=104 Identities=18% Similarity=0.142 Sum_probs=57.7
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCC--cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccc
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGH--QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQ 79 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~--~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~ 79 (742)
++.+++|||.||..-+..+.+.+. .+.++---++..... |. ...+...|+.+|+++..+.++......
T Consensus 255 ~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~---~E-------~~~A~~vA~~lg~~~~~i~~~~~~~~~ 324 (467)
T TIGR01536 255 PVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDF---DE-------SPYARKVADHLGTEHHEVLFSVEEGLD 324 (467)
T ss_pred ceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCC---Ch-------HHHHHHHHHHhCCcCeEEECCHHHHHH
Confidence 478999999999988777766544 444442223321111 11 235889999999999988775321110
Q ss_pred ---cccc---cCCCcchHHHHHHHHHHHHhhCCCceEEEEcccc
Q 004613 80 ---KLSY---RMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIA 117 (742)
Q Consensus 80 ---~~~Y---~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~ 117 (742)
..-| .+....-.--++.+.+.+++ + |++.+.+|+-.
T Consensus 325 ~~~~~v~~~~~p~~~~~~~~~~~l~~~a~~-~-G~~vlltG~Ga 366 (467)
T TIGR01536 325 ALPEVIYHLEDPTTIRASIPLYLLSKLARE-D-GVKVVLSGEGA 366 (467)
T ss_pred HHHHHHHhhCCCCCCchHHHHHHHHHHHHh-c-CCEEEEecCcc
Confidence 0001 01101111123333344444 3 89999999644
No 117
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=92.13 E-value=0.93 Score=46.50 Aligned_cols=54 Identities=31% Similarity=0.480 Sum_probs=41.1
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcC---CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEe
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYG---HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRR 71 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G---~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~ 71 (742)
||++++.||+-..+.+++.++++| ++|+++++-.| +.. +..+|+..|||.+...
T Consensus 2 ~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~--------~~~---------~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 2 KRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP--------DAY---------GLERAEAAGIPTFVLD 58 (200)
T ss_pred ceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc--------cch---------HHHHHHHcCCCEEEEC
Confidence 799999999999999999999887 45555444322 121 5678999999998864
No 118
>PRK13981 NAD synthetase; Provisional
Probab=92.05 E-value=0.55 Score=55.16 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=43.8
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CC-cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GH-QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~-~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
++++.+|||-||++.+..|.+. |+ +|.++ +.|..... .--.+.++..|+.+|+|+..+.+.
T Consensus 282 ~~vvglSGGiDSa~~a~la~~a~g~~~v~~~--~~p~~~~~---------~~~~~~a~~~a~~lgi~~~~i~i~ 344 (540)
T PRK13981 282 GVVLGLSGGIDSALVAAIAVDALGAERVRAV--MMPSRYTS---------EESLDDAAALAKNLGVRYDIIPIE 344 (540)
T ss_pred eEEEECCCCHHHHHHHHHHHHHhCcCcEEEE--ECCCCCCC---------HHHHHHHHHHHHHcCCeEEEEECH
Confidence 6899999999999999999776 75 45544 33422100 012456888999999999888763
No 119
>PTZ00323 NAD+ synthase; Provisional
Probab=91.94 E-value=0.28 Score=53.32 Aligned_cols=62 Identities=21% Similarity=0.145 Sum_probs=41.7
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CC---cEEEEEEe-ecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GH---QIVALANL-MPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~---~vv~L~~~-~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
++|+.+|||-||++.+..|.+. |. .+.-++++ .|...+.+ -.+-+...|+.+|+++..+++.
T Consensus 48 ~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~----------~~~~A~~la~~lGi~~~~idi~ 114 (294)
T PTZ00323 48 GCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAW----------ALNRGRENIQACGATEVTVDQT 114 (294)
T ss_pred cEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHH----------HHHHHHHHHHHhCCcEEEEECc
Confidence 5799999999999999888775 32 22223333 34221111 1345788899999999999774
No 120
>PRK06850 hypothetical protein; Provisional
Probab=91.91 E-value=0.59 Score=54.34 Aligned_cols=110 Identities=19% Similarity=0.131 Sum_probs=55.8
Q ss_pred eEEEEeeCchHHHHHHHHHHHcC--------CcEEEEEEeecCCCCCCccCcccccccC--HHHHHHHHHHcCCCeEEEe
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYG--------HQIVALANLMPADDSVDELDSYMYQTVG--HQIIVSYAECMGLPLFRRR 71 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G--------~~vv~L~~~~p~~~~~~~~dS~m~q~v~--~~~i~~~A~algiPl~~~~ 71 (742)
.+++.|||||||+..+..+.+.- +..+.+++. +... |. ..++..+. .+.+...|+..|+|+....
T Consensus 36 P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~---DTgv-E~-Pe~~~~v~~~l~~i~~~a~~~glpi~~~~ 110 (507)
T PRK06850 36 PWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISS---DTLV-EN-PVVVDWVNKSLERINEAAKKQGLPITPHK 110 (507)
T ss_pred CeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEEC---CCCC-cc-HHHHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 36899999999999997765541 222333221 2111 10 11222221 2345667888899997655
Q ss_pred cCCCccc------cccccc--------CCCcchHHHHHHHHHHHHhhCCCceEEEEcccc
Q 004613 72 IHGSTRH------QKLSYR--------MTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIA 117 (742)
Q Consensus 72 i~g~~~~------~~~~Y~--------~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~ 117 (742)
+...... .+..|+ ||..--+.-+.++++++.+++ +--.++.|-=.
T Consensus 111 v~P~~~~sFwv~liGrG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~-ge~v~vlGvR~ 169 (507)
T PRK06850 111 LTPKINDTFWVNLIGKGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEF-GEVIVVLGVRK 169 (507)
T ss_pred eCCCcchhHHHHHhcCCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhc-CcEEEEEEeec
Confidence 4321110 012242 222223445556666665555 44456666544
No 121
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=90.72 E-value=1.1 Score=46.80 Aligned_cols=53 Identities=8% Similarity=0.017 Sum_probs=34.3
Q ss_pred eEEEEeeCchHHHHHHHHHHHcC---CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCe
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYG---HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPL 67 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G---~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl 67 (742)
++++++||||||+..|+.+.+.+ ..|+.+=|-+. |.. -.+.++..++.+|+.+
T Consensus 27 ~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~------------fpE-T~e~~d~~~~~~~~~l 82 (226)
T TIGR02057 27 GLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYH------------FPQ-TLTLKDELTKKYYQTL 82 (226)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCC------------CHH-HHHHHHHHHHHhCCce
Confidence 58999999999999999888765 23333322111 111 1345788888999544
No 122
>PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D.
Probab=90.61 E-value=1.4 Score=43.06 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCc---ccEEEEEEEecCcccHHH-------HHHHHHHhcCCCCCCCCCCcceEEeccccc
Q 004613 333 LDDLRVVLKQIESKLVRYGFDW---GHVLYIHLYISDMNEFAV-------ANETYVKFITHEKCPCGVPSRSTIELPLLE 402 (742)
Q Consensus 333 ~eQt~~il~nL~~~L~~~G~sl---~dVv~vtlyL~Dm~df~~-------vN~vY~~~F~~~~~p~~pPARt~V~v~~L~ 402 (742)
.+-++.+.-|+-+.|+++=-++ ..|++++.|+..-.+|.+ .-+...+.|++. +.+||+.|++..||
T Consensus 60 ~~AAr~~~Ln~La~lk~~~G~LdrV~~ivkl~g~V~s~~~F~~~p~V~ngaSdll~~vfGe~----G~HaRsAvGv~sLP 135 (148)
T PF14588_consen 60 YEAARLCALNALAALKAALGDLDRVKRIVKLTGFVNSTPDFTEHPAVANGASDLLVEVFGEA----GRHARSAVGVASLP 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSGGGECEEEEEEEEEEB-TT---HHHHHHHHHHHHHHHHGGG----G-BEEEEEEESC-G
T ss_pred HHHHHHHHHHHHHHHHHHhCCHhHEeEEEEEEEEEecCCCcccCchhhhhHHHHHHHHhCcC----CCCcccccccccCC
Confidence 3456667777777776543355 467999999998888733 346777889875 47999999999999
Q ss_pred cccceeEEEeee
Q 004613 403 VGLGKAYIEVLV 414 (742)
Q Consensus 403 ~~~~~~~ieV~a 414 (742)
.+.. ++||.++
T Consensus 136 ~~a~-VEie~i~ 146 (148)
T PF14588_consen 136 LNAP-VEIELIA 146 (148)
T ss_dssp GGBS-EEEEEEE
T ss_pred CCCe-EEEEEEE
Confidence 8864 5666654
No 123
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=89.28 E-value=2.2 Score=46.22 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=42.1
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcC---CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEec
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYG---HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRI 72 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G---~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i 72 (742)
||++++.||+.=.+.|++.+.+.| ++|+++++=.|. +..+|+..|||.+....
T Consensus 90 ~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~-------------------~~~lA~~~gIp~~~~~~ 145 (286)
T PRK13011 90 PKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPD-------------------LEPLAAWHGIPFHHFPI 145 (286)
T ss_pred ceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCcc-------------------HHHHHHHhCCCEEEeCC
Confidence 799999999987788888899887 688888774331 44559999999988753
No 124
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=88.43 E-value=3.5 Score=42.01 Aligned_cols=54 Identities=26% Similarity=0.446 Sum_probs=39.8
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCC---cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEe
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGH---QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRR 71 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~---~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~ 71 (742)
||++++.||+-..+.+++.++++|. +|+++++=.| +.+ ....|+..|||.+...
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~--------~~~---------~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKP--------DAY---------GLERAAQAGIPTFVLS 57 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCc--------cch---------HHHHHHHcCCCEEEEC
Confidence 8999999999999999999998874 4444444222 111 3567999999988753
No 125
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=87.93 E-value=0.54 Score=51.43 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=23.5
Q ss_pred eEEEEeeCchHHHHHHHHHH----HcCCcEEEEEEe
Q 004613 2 KVVALVSGGKDSCYAMMKCI----QYGHQIVALANL 33 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~----~~G~~vv~L~~~ 33 (742)
+|+++|||||||.+-++.++ ++|+.-++++.+
T Consensus 29 ~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~Vlfi 64 (407)
T COG3969 29 RVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFI 64 (407)
T ss_pred eEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEE
Confidence 58999999999999887654 466644555443
No 126
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=86.34 E-value=4 Score=44.25 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=41.0
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcC---CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEec
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYG---HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRI 72 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G---~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i 72 (742)
||+++|.||+-=.+-|++.+.+.| ++|+++++=.| + +..+|+..|||.+....
T Consensus 90 ~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~---------~----------~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 90 KRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD---------D----------LRSLVERFGIPFHHVPV 145 (286)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh---------h----------HHHHHHHhCCCEEEecc
Confidence 699999999977777778888884 78888877422 1 44569999999988754
No 127
>PRK00768 nadE NAD synthetase; Reviewed
Probab=85.73 E-value=2.8 Score=45.02 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=40.8
Q ss_pred eEEEEeeCchHHHHHHHHHHHc----C-----CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCC-CeEEEe
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY----G-----HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGL-PLFRRR 71 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~----G-----~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algi-Pl~~~~ 71 (742)
++|+-+|||.||++++..|.+. | -.+..+....|... + -..+-....|+.+|+ ++..+.
T Consensus 40 g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~----------~-~~~~da~~la~~lgi~~~~~i~ 108 (268)
T PRK00768 40 SLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGV----------Q-ADEDDAQDALAFIQPDRVLTVN 108 (268)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCC----------c-CCHHHHHHHHHhcCCCeeEEEE
Confidence 5899999999999999855532 2 22444555555321 1 124557888999999 677776
Q ss_pred cC
Q 004613 72 IH 73 (742)
Q Consensus 72 i~ 73 (742)
|.
T Consensus 109 I~ 110 (268)
T PRK00768 109 IK 110 (268)
T ss_pred CH
Confidence 63
No 128
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=84.77 E-value=51 Score=33.98 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchH
Q 004613 12 DSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEV 91 (742)
Q Consensus 12 DS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~ 91 (742)
|-.-.+....+.|.+-+.++.+ +. ...-+..+.++++..++..++|+..- |.- ...
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dl---d~------~~~g~~~~~~~i~~i~~~~~~pv~~~---GGI------------~~~ 86 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDL---DG------AKAGKPVNLELIEAIVKAVDIPVQVG---GGI------------RSL 86 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeC---Cc------cccCCcccHHHHHHHHHHCCCCEEEc---CCc------------CCH
Confidence 5555555666678766666665 11 00123467888999999999998653 221 123
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeee-----------cc----ccCHHHHHHHHHHcC
Q 004613 92 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAY-----------LW----KQDQSLLLQEMITNG 156 (742)
Q Consensus 92 e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~p-----------LW----~~d~~~ll~em~~~G 156 (742)
|++.+++.. |+++|+.|.-+.+- ..++++++++.+=....+ =| ..+..++.+++.+.|
T Consensus 87 ed~~~~~~~------Ga~~vilg~~~l~~-~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g 159 (233)
T PRK00748 87 ETVEALLDA------GVSRVIIGTAAVKN-PELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAG 159 (233)
T ss_pred HHHHHHHHc------CCCEEEECchHHhC-HHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcC
Confidence 455544442 89999999987542 245566666542211111 24 345689999999999
Q ss_pred CcEEEEE-EecCCCCCccccCccccchhHHHHHhhhhcCCccccCCc
Q 004613 157 INAITVK-VAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 202 (742)
Q Consensus 157 ~~a~ii~-Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 202 (742)
.+.+++- ++..|-. -| .+ .+.+.++.+...+-+..+||
T Consensus 160 ~~~ii~~~~~~~g~~----~G--~d--~~~i~~l~~~~~ipvia~GG 198 (233)
T PRK00748 160 VKAIIYTDISRDGTL----SG--PN--VEATRELAAAVPIPVIASGG 198 (233)
T ss_pred CCEEEEeeecCcCCc----CC--CC--HHHHHHHHHhCCCCEEEeCC
Confidence 9965554 6655532 25 33 45566666554555666665
No 129
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=84.28 E-value=4.6 Score=43.43 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=47.2
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHG 74 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g 74 (742)
|+++-.|||-||..+...+.+. |-++.|++.=+ -.|=-.-+.++.+...+.+|+++..+.-+.
T Consensus 23 kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~----------GLlR~~E~e~V~~~f~~~~~~nl~~VdA~~ 86 (315)
T COG0519 23 KVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDH----------GLLRKGEAEQVVEMFREHLGLNLIVVDAKD 86 (315)
T ss_pred eEEEEecCCCcHHHHHHHHHHHhhcceEEEEecC----------CcccCCcHHHHHHHHHhhcCCceEEEchHH
Confidence 6889999999999998877765 88888886521 122223345678889999999999886543
No 130
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=84.12 E-value=55 Score=33.75 Aligned_cols=153 Identities=20% Similarity=0.221 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchH
Q 004613 12 DSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEV 91 (742)
Q Consensus 12 DS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~ 91 (742)
|-.-.+....+.|.+=+.++++-... -=|..+.++++..++..++|+..- |.- ...
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~---------~g~~~~~~~i~~i~~~~~~pi~~g---gGI------------~~~ 84 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAK---------EGGPVNLPVIKKIVRETGVPVQVG---GGI------------RSL 84 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccc---------cCCCCcHHHHHHHHHhcCCCEEEe---CCc------------CCH
Confidence 33333334455676656666552211 014457888999999999998663 211 113
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeee------------ccc----cCHHHHHHHHHHc
Q 004613 92 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAY------------LWK----QDQSLLLQEMITN 155 (742)
Q Consensus 92 e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~p------------LW~----~d~~~ll~em~~~ 155 (742)
|++..++. . |+++|+.|....+. ..++.++++++|.+.+.+ =|+ .+..++++++.+.
T Consensus 85 ed~~~~~~----~--Ga~~vvlgs~~l~d-~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 157 (230)
T TIGR00007 85 EDVEKLLD----L--GVDRVIIGTAAVEN-PDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEEL 157 (230)
T ss_pred HHHHHHHH----c--CCCEEEEChHHhhC-HHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhC
Confidence 45544444 2 99999999776542 467888999998654322 243 3557899999999
Q ss_pred CCcEEEE-EEecCCCCCccccCccccchhHHHHHhhhhcCCccccCCce
Q 004613 156 GINAITV-KVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGE 203 (742)
Q Consensus 156 G~~a~ii-~Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGE 203 (742)
|++.+++ .++..|.. -|. + .+.+.++.+..++-+..+||-
T Consensus 158 g~~~ii~~~~~~~g~~----~g~--~--~~~i~~i~~~~~ipvia~GGi 198 (230)
T TIGR00007 158 GLEGIIYTDISRDGTL----SGP--N--FELTKELVKAVNVPVIASGGV 198 (230)
T ss_pred CCCEEEEEeecCCCCc----CCC--C--HHHHHHHHHhCCCCEEEeCCC
Confidence 9997775 45555532 243 3 455666665555666666663
No 131
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=83.92 E-value=14 Score=38.76 Aligned_cols=132 Identities=20% Similarity=0.262 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCcEEEE-EEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEec-CCCcccccccccCCCcc
Q 004613 12 DSCYAMMKCIQYGHQIVAL-ANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRI-HGSTRHQKLSYRMTPGD 89 (742)
Q Consensus 12 DS~~al~~~~~~G~~vv~L-~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i-~g~~~~~~~~Y~~~~~d 89 (742)
|+.-.++.+++.|-+-+=| .++.-.. =|+..-+++..++...||++..-= +|. +.-| ..+
T Consensus 9 en~~~l~~A~~~GAdRiELC~~La~GG-----------~TPSyG~~k~a~~~~~ipv~~MIRPRgG----dFvY---~~~ 70 (241)
T COG3142 9 ENVEGLLAAQAAGADRIELCDALAEGG-----------LTPSYGVIKEAVELSKIPVYVMIRPRGG----DFVY---SDD 70 (241)
T ss_pred cCHhhHHHHHHcCCceeehhhccccCC-----------CCCCHHHHHHHHhhcCCceEEEEecCCC----Cccc---ChH
Confidence 4555677888888655555 3443221 123334588888889999986632 222 2335 368
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEEcccchh--hHHHHHHHHH---hhcCCeEeeec-cccCHHHHHHHHHHcCCcEEEEE
Q 004613 90 EVEDMYILLNEVKRQIPSVTAVSSGAIASD--YQRLRVESVC---SRLGLVSLAYL-WKQDQSLLLQEMITNGINAITVK 163 (742)
Q Consensus 90 e~e~l~~~L~~vk~~~~~i~~v~~GaI~s~--yqr~rve~vc---~rlgl~~l~pL-W~~d~~~ll~em~~~G~~a~ii~ 163 (742)
|.+-|.+=++.+++. |+++||+|++-.+ --..+.|.+. ..|+++-.--+ --.|+.+-|+.+++.|++=++++
T Consensus 71 E~~iM~~DI~~~~~l--G~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs 148 (241)
T COG3142 71 ELEIMLEDIRLAREL--GVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS 148 (241)
T ss_pred HHHHHHHHHHHHHHc--CCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC
Confidence 889998888888776 9999999999743 2234555543 33444421111 11389999999999999988763
No 132
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=83.78 E-value=2.4 Score=41.50 Aligned_cols=94 Identities=22% Similarity=0.267 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCcEEEEEEeecCCC--C--CCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcch
Q 004613 15 YAMMKCIQYGHQIVALANLMPADD--S--VDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDE 90 (742)
Q Consensus 15 ~al~~~~~~G~~vv~L~~~~p~~~--~--~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de 90 (742)
-||+.|.+.|.+|+++.-+-|... . ...--.||++++.. +...-+.+|+||+... ++-
T Consensus 15 ~aL~~A~~~~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~--L~~~L~~~g~~L~v~~----------------g~~ 76 (165)
T PF00875_consen 15 PALHAAAQNGDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLAD--LQESLRKLGIPLLVLR----------------GDP 76 (165)
T ss_dssp HHHHHHHHTTSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHH--HHHHHHHTTS-EEEEE----------------SSH
T ss_pred HHHHHHHHcCCCeEEEEEecccccccccCcchHHHHHHHHHHH--HHHHHHhcCcceEEEe----------------cch
Confidence 477889999999999887766520 0 11112344444322 3344455799998884 333
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhh
Q 004613 91 VEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSR 131 (742)
Q Consensus 91 ~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~r 131 (742)
.+.+..++++ + +|+.|.+-.-...|.+.|.+++.+.
T Consensus 77 ~~~l~~l~~~----~-~~~~V~~~~~~~~~~~~rd~~v~~~ 112 (165)
T PF00875_consen 77 EEVLPELAKE----Y-GATAVYFNEEYTPYERRRDERVRKA 112 (165)
T ss_dssp HHHHHHHHHH----H-TESEEEEE---SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----c-CcCeeEeccccCHHHHHHHHHHHHH
Confidence 3344444444 3 7999998888888888887666443
No 133
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=83.07 E-value=7.1 Score=42.25 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=41.0
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcC---CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEec
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYG---HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRI 72 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G---~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i 72 (742)
||+++|.||+-=.+.|++.+.+.| .+|+++++=+|. +..+|+..|||.+..+.
T Consensus 85 ~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~-------------------~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 85 KRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHED-------------------LRSLVERFGIPFHYIPA 140 (280)
T ss_pred cEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChh-------------------HHHHHHHhCCCEEEcCC
Confidence 689999999977777888999888 377777764431 34469999999988753
No 134
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=82.67 E-value=7.1 Score=42.44 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=41.4
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcC---CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYG---HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G---~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
||+++|.||+==.+.|++.+.+.| .+|+++++=.| + +...|+..|||.+..+.+
T Consensus 94 ~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~------------------~-~~~~A~~~gIp~~~~~~~ 150 (289)
T PRK13010 94 PKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP------------------D-LQPLAVQHDIPFHHLPVT 150 (289)
T ss_pred eEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh------------------h-HHHHHHHcCCCEEEeCCC
Confidence 789999999977777888999887 47777766332 1 347799999999987543
No 135
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=80.94 E-value=5.9 Score=45.14 Aligned_cols=99 Identities=13% Similarity=0.158 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCcEEEEEEeecCCCC----------CCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccccccc
Q 004613 15 YAMMKCIQYGHQIVALANLMPADDS----------VDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYR 84 (742)
Q Consensus 15 ~al~~~~~~G~~vv~L~~~~p~~~~----------~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~ 84 (742)
-||++|++.+.+|++|..+-|..-. ...--.||++++ +-+...-+.+|+||+...
T Consensus 17 ~aL~~A~~~~~~vl~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~esL--~~L~~~L~~~g~~L~v~~------------- 81 (429)
T TIGR02765 17 PALYKASSSSDTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLLESL--KDLRTSLRKLGSDLLVRS------------- 81 (429)
T ss_pred HHHHHHHhcCCeEEEEEEECchHhccccccccCCCCHHHHHHHHHHH--HHHHHHHHHcCCCeEEEe-------------
Confidence 4778888888889888877664211 000112232222 224444556899998872
Q ss_pred CCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhh---cCCeE
Q 004613 85 MTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSR---LGLVS 136 (742)
Q Consensus 85 ~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~r---lgl~~ 136 (742)
++-.+-+.+++ +++ +|++|.+=.-..-|.|.|-+.|.+. .|+..
T Consensus 82 ---G~~~~vl~~L~----~~~-~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~ 128 (429)
T TIGR02765 82 ---GKPEDVLPELI----KEL-GVRTVFLHQEVGSEEKSVERLLQQALARLGIHV 128 (429)
T ss_pred ---CCHHHHHHHHH----HHh-CCCEEEEeccCCHHHHHHHHHHHHHHHhcCceE
Confidence 22233344444 344 8999999988888999888887444 46643
No 136
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=80.25 E-value=8.1 Score=44.77 Aligned_cols=94 Identities=22% Similarity=0.228 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCcEEEEEEeecCCCCCCcc----CcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcch
Q 004613 15 YAMMKCIQYGHQIVALANLMPADDSVDEL----DSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDE 90 (742)
Q Consensus 15 ~al~~~~~~G~~vv~L~~~~p~~~~~~~~----dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de 90 (742)
-||.+|.+.|.+|+++..+-|........ -.||++++ .-+...-+.+|+||+... ++.
T Consensus 17 ~AL~~A~~~~~~vl~vfi~dp~~~~~~~~~~~r~~Fl~esL--~~L~~~L~~~G~~L~v~~----------------G~p 78 (471)
T TIGR03556 17 IGLAAARQQSAKVVGLFCLDPNILQADDMAPARVAYLIGCL--QELQQRYQQAGSQLLILQ----------------GDP 78 (471)
T ss_pred HHHHHHHhcCCCEEEEEEEchhhhccccCCHHHHHHHHHHH--HHHHHHHHHCCCCeEEEE----------------CCH
Confidence 47788888888999998877642111000 13444333 224444455799998873 222
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhh
Q 004613 91 VEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSR 131 (742)
Q Consensus 91 ~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~r 131 (742)
.+-+.+++ +++ +|++|.+=.-..-|.+.|.++|++.
T Consensus 79 ~~vl~~l~----~~~-~~~~V~~~~~~~~~~~~rd~~v~~~ 114 (471)
T TIGR03556 79 VQLIPQLA----QQL-GAKAVYWNLDVEPYGRKRDRAVAAA 114 (471)
T ss_pred HHHHHHHH----HHc-CCCEEEEecccCHHHHHHHHHHHHH
Confidence 33343344 344 8999998877777888887666544
No 137
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=78.01 E-value=8.3 Score=45.67 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=38.6
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCC--------------cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCe
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGH--------------QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPL 67 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~--------------~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl 67 (742)
++.+++|||-||..-+..|.+... .+.+...-++. . .=...++..|+.+|.++
T Consensus 229 pvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~---~----------~D~~~A~~vA~~lg~~h 295 (554)
T PRK09431 229 PYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG---S----------PDLKAAREVADHLGTVH 295 (554)
T ss_pred ceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCCC---C----------ChHHHHHHHHHHhCCcc
Confidence 478999999999988777766532 22222111111 0 11345888999999999
Q ss_pred EEEecC
Q 004613 68 FRRRIH 73 (742)
Q Consensus 68 ~~~~i~ 73 (742)
..+.++
T Consensus 296 ~~v~~t 301 (554)
T PRK09431 296 HEIHFT 301 (554)
T ss_pred EEEEeC
Confidence 888765
No 138
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=75.34 E-value=9.5 Score=45.72 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=39.3
Q ss_pred eEEEEeeCchHHHHHHHHHHHcC-CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYG-HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G-~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
.+.+.+|||-||..-+..+.+.+ ..+.+. |+.-++...+| ...++..|+.+|.++....+.
T Consensus 260 ~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~-s~~~~~~~~dE----------~~~A~~vA~~~g~~h~~~~~~ 321 (628)
T TIGR03108 260 PLGAFLSGGVDSSAVVALMAGLSDTPVNTC-SIAFDDPAFDE----------SAYARQVAERYGTNHRVETVD 321 (628)
T ss_pred cceEeecCCccHHHHHHHHHHhcCCCCcEE-EEecCCCCCCh----------HHHHHHHHHHhCCCCeEEecC
Confidence 36789999999997655544443 445544 43222211122 234889999999999888765
No 139
>PLN02828 formyltetrahydrofolate deformylase
Probab=75.14 E-value=15 Score=39.54 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=45.5
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcC---CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYG---HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G---~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
||+++|.||.==++.+++...+.| .+|+++++-.|... +. -+...|+..|||.+..+..
T Consensus 71 ~riavlvSg~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~-----~a---------~~~~~A~~~gIP~~~~~~~ 132 (268)
T PLN02828 71 YKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGP-----NT---------HVMRFLERHGIPYHYLPTT 132 (268)
T ss_pred cEEEEEEcCCChhHHHHHHhhhcCCCCceEEEEEeCCCCCC-----Cc---------hHHHHHHHcCCCEEEeCCC
Confidence 689999999988888999999888 58888888665321 11 1566799999999877543
No 140
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=74.97 E-value=1.1e+02 Score=31.58 Aligned_cols=153 Identities=22% Similarity=0.239 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchH
Q 004613 12 DSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEV 91 (742)
Q Consensus 12 DS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~ 91 (742)
|..-.+..+.++|.+-..++.+-.. +.-+..+.+++....+..++|+..- |.- ...
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~---------~~~~~~~~~~i~~i~~~~~~pv~~~---GgI------------~~~ 85 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGA---------KGGEPVNLELIEEIVKAVGIPVQVG---GGI------------RSL 85 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcc---------ccCCCCCHHHHHHHHHhcCCCEEEe---CCc------------CCH
Confidence 6666666666778776666644211 1125567888999999999998654 211 113
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCe-E-----------eeecc----ccCHHHHHHHHHHc
Q 004613 92 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLV-S-----------LAYLW----KQDQSLLLQEMITN 155 (742)
Q Consensus 92 e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~-~-----------l~pLW----~~d~~~ll~em~~~ 155 (742)
|+..++++. |++.|+.|....+ ...+++++.++.|-+ . ...-| ..+..++++.+.+.
T Consensus 86 e~~~~~~~~------Gad~vvigs~~l~-dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T cd04732 86 EDIERLLDL------GVSRVIIGTAAVK-NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEEL 158 (234)
T ss_pred HHHHHHHHc------CCCEEEECchHHh-ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHc
Confidence 455555531 8999999998754 356778888888762 1 12234 34677899999999
Q ss_pred CCcEEEEE-EecCCCCCccccCccccchhHHHHHhhhhcCCccccCCce
Q 004613 156 GINAITVK-VAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGE 203 (742)
Q Consensus 156 G~~a~ii~-Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGE 203 (742)
|.+.+++- +...|-. -| .+ .+.+.++.+...+-++..||-
T Consensus 159 ga~~iii~~~~~~g~~----~g--~~--~~~i~~i~~~~~ipvi~~GGi 199 (234)
T cd04732 159 GVKAIIYTDISRDGTL----SG--PN--FELYKELAAATGIPVIASGGV 199 (234)
T ss_pred CCCEEEEEeecCCCcc----CC--CC--HHHHHHHHHhcCCCEEEecCC
Confidence 99988774 5554432 24 22 455666666555656666553
No 141
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=74.62 E-value=7.2 Score=47.49 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCeEEEecC
Q 004613 53 HQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 53 ~~~i~~~A~algiPl~~~~i~ 73 (742)
.+-....|+.||+.+..+.|.
T Consensus 428 ~~~A~~la~~lG~~~~~i~I~ 448 (700)
T PLN02339 428 RSRAKQLADEIGSSHLDVKID 448 (700)
T ss_pred HHHHHHHHHHHCCCEEEEeCH
Confidence 345888999999999999874
No 142
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=73.79 E-value=1.2e+02 Score=31.62 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchH
Q 004613 12 DSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEV 91 (742)
Q Consensus 12 DS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~ 91 (742)
|-.--+..+.+.|.+=+.++.+-... .-+.+..++++.+++..++|++.- |.- ...
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~---------~~~~~~~~~i~~i~~~~~~pv~~~---GGI------------~s~ 83 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASS---------EGRETMLDVVERVAEEVFIPLTVG---GGI------------RSL 83 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccc---------ccCcccHHHHHHHHHhCCCCEEEe---CCC------------CCH
Confidence 33344445567787766666653311 125667889999999999998643 321 123
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCC-----------------eEeeecccc----CHHHHHH
Q 004613 92 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGL-----------------VSLAYLWKQ----DQSLLLQ 150 (742)
Q Consensus 92 e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl-----------------~~l~pLW~~----d~~~ll~ 150 (742)
++..+++.. |+++|+.|-.+... -.+++++++++|- ......|.. +..++.+
T Consensus 84 ~d~~~~l~~------G~~~v~ig~~~~~~-p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~ 156 (243)
T cd04731 84 EDARRLLRA------GADKVSINSAAVEN-PELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAK 156 (243)
T ss_pred HHHHHHHHc------CCceEEECchhhhC-hHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHH
Confidence 455555541 78999888665321 2455666666542 122334533 4568889
Q ss_pred HHHHcCCcEEEEE-EecCCCCCccccCccccchhHHHHHhhhhcCCccccCCcee
Q 004613 151 EMITNGINAITVK-VAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEY 204 (742)
Q Consensus 151 em~~~G~~a~ii~-Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGEy 204 (742)
++.+.|++.+++. +...|-.+ | ++ .+.+.++.+..++-+...||-.
T Consensus 157 ~l~~~G~d~i~v~~i~~~g~~~----g--~~--~~~i~~i~~~~~~pvia~GGi~ 203 (243)
T cd04731 157 EVEELGAGEILLTSMDRDGTKK----G--YD--LELIRAVSSAVNIPVIASGGAG 203 (243)
T ss_pred HHHHCCCCEEEEeccCCCCCCC----C--CC--HHHHHHHHhhCCCCEEEeCCCC
Confidence 9999999988874 33333211 2 22 4556666654455555555543
No 143
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=73.51 E-value=6.3 Score=42.39 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=40.5
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-CC---cEEEEEEeecCCC-CCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-GH---QIVALANLMPADD-SVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G~---~vv~L~~~~p~~~-~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
++|+-+|||-||.+++..|.+. |. .-..++.+.|... ... -.+-+...++++|+....+.|+
T Consensus 27 ~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~----------~~~da~~~~~~lg~~~~~i~I~ 93 (268)
T COG0171 27 GVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQA----------DEEDAQDLAEALGIDYKEINIK 93 (268)
T ss_pred CeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCcccc----------CHHHHHHHHHHhCCceEEEecH
Confidence 5899999999999999988876 31 1112334556431 111 1233677899999996566664
No 144
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=72.34 E-value=12 Score=43.31 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhc---CCeEeeec-cccCHHHHHHHHHHcCCcEEEEEEe
Q 004613 90 EVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL---GLVSLAYL-WKQDQSLLLQEMITNGINAITVKVA 165 (742)
Q Consensus 90 e~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rl---gl~~l~pL-W~~d~~~ll~em~~~G~~a~ii~Va 165 (742)
..|.+.+-++.+++++++++.+.++|-.-...+.|++.+|+.+ |+.-.... ... ..++|+.|.++|+..+.+.+-
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~-~~e~l~~l~~aG~~~v~iGiE 306 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARANV-DYETLKVMKENGLRLLLVGYE 306 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCCC-CHHHHHHHHHcCCCEEEEcCC
Confidence 4577777777777777788888887755445677888888654 65322221 122 468999999999999888876
Q ss_pred cCC---CCCccccCcccc--chhHHHHHhhhhcCCccc
Q 004613 166 AMG---LEPGKHLGKEIA--FLDPYLHKLKESYGINVC 198 (742)
Q Consensus 166 ~~g---L~~~~~lG~~l~--~~~~~l~~l~~~~g~~~c 198 (742)
+.- |+ .++|..+ +..+.+..+. ++|+.+.
T Consensus 307 S~s~~~L~---~~~K~~~~~~~~~~i~~~~-~~Gi~v~ 340 (472)
T TIGR03471 307 SGDQQILK---NIKKGLTVEIARRFTRDCH-KLGIKVH 340 (472)
T ss_pred CCCHHHHH---HhcCCCCHHHHHHHHHHHH-HCCCeEE
Confidence 532 32 3456554 2334444444 4677554
No 145
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=72.29 E-value=10 Score=38.68 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=63.5
Q ss_pred HHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhH--HHHHHH---HHh
Q 004613 56 IVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQ--RLRVES---VCS 130 (742)
Q Consensus 56 i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yq--r~rve~---vc~ 130 (742)
+.-+.+.+-||+|-.--+... +.-| .+||.+.+..-++-+|+. |+++.+||++-++=+ |+--.+ .|.
T Consensus 51 l~~~k~~~~iP~ycMiRpR~G---DFvY---sd~Em~a~~~Dv~llk~~--GAdGfVFGaLt~dgsid~~~C~si~~~~r 122 (255)
T KOG4013|consen 51 LSILKYKYPIPLYCMIRPRAG---DFVY---SDDEMAANMEDVELLKKA--GADGFVFGALTSDGSIDRTSCQSIIETAR 122 (255)
T ss_pred hhhhhcccccceEEEEecCCC---Cccc---chHHHHHHHHHHHHHHHc--CCCceEEeecCCCCCcCHHHHHHHHHhcC
Confidence 566677788999865222111 3346 478888887766666665 999999999986533 222222 233
Q ss_pred hcCCeEee-eccccCHHHHHHHHH-HcCCcEEEEEEecCCCCCc
Q 004613 131 RLGLVSLA-YLWKQDQSLLLQEMI-TNGINAITVKVAAMGLEPG 172 (742)
Q Consensus 131 rlgl~~l~-pLW~~d~~~ll~em~-~~G~~a~ii~Va~~gL~~~ 172 (742)
.|-.+-.- +=--.|+..-+++++ +.||+.+++ .|.+|+
T Consensus 123 plPVTFHRAfD~~~D~k~~lE~~l~~lGF~rvLt----SG~~ps 162 (255)
T KOG4013|consen 123 PLPVTFHRAFDVAYDWKTCLEDALLDLGFKRVLT----SGQEPS 162 (255)
T ss_pred CCceeeeeehhhhcCHHHHHHHHHHHhhHHHHhh----cCCCcc
Confidence 33222110 001137888888776 999998775 455554
No 146
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=70.72 E-value=7.5 Score=38.77 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=57.0
Q ss_pred HHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCe
Q 004613 56 IVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLV 135 (742)
Q Consensus 56 i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~ 135 (742)
..++.+.+++|++.+++++ .|+.++|.++++..+.|-.|.+..+... .+.++.-+|+.
T Consensus 45 a~~lr~~~~iPVV~I~~s~-----------------~Dil~al~~a~~~~~~Iavv~~~~~~~~-----~~~~~~ll~~~ 102 (176)
T PF06506_consen 45 AELLRKHVSIPVVEIPISG-----------------FDILRALAKAKKYGPKIAVVGYPNIIPG-----LESIEELLGVD 102 (176)
T ss_dssp HHHHHCC-SS-EEEE---H-----------------HHHHHHHHHCCCCTSEEEEEEESS-SCC-----HHHHHHHHT-E
T ss_pred HHHHHHhCCCCEEEECCCH-----------------hHHHHHHHHHHhcCCcEEEEecccccHH-----HHHHHHHhCCc
Confidence 5566777899999998764 4899999999876555555566655533 56777788999
Q ss_pred EeeeccccCH--HHHHHHHHHcCCcEEEEE
Q 004613 136 SLAYLWKQDQ--SLLLQEMITNGINAITVK 163 (742)
Q Consensus 136 ~l~pLW~~d~--~~ll~em~~~G~~a~ii~ 163 (742)
...+.|.... +..+.++.+.|++++|=.
T Consensus 103 i~~~~~~~~~e~~~~i~~~~~~G~~viVGg 132 (176)
T PF06506_consen 103 IKIYPYDSEEEIEAAIKQAKAEGVDVIVGG 132 (176)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTT--EEEES
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCcEEECC
Confidence 9999987533 366888888999998864
No 147
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=70.41 E-value=14 Score=44.13 Aligned_cols=63 Identities=22% Similarity=0.136 Sum_probs=40.3
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEe-ecCCC--CCCccCcccccccCHHHHHHHHHHcCCCeEEEecCC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANL-MPADD--SVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHG 74 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~-~p~~~--~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g 74 (742)
.+.+++|||-||..=+..+.+.+...+..+|+ ++... ..+| .+.++..|+.+|.++..+.+..
T Consensus 262 pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE----------~~~A~~vA~~~g~~h~~i~~~~ 327 (589)
T TIGR03104 262 PVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDE----------FEYSDIIAERFHTRHHKIRIPN 327 (589)
T ss_pred ceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCCh----------HHHHHHHHHHhCCcCeEEEcCH
Confidence 47899999999997766666655443333333 22110 0112 2458899999999998887653
No 148
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=69.82 E-value=39 Score=34.94 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=40.3
Q ss_pred eEEEEeeCchHHHHHHHHHHHcC---CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEe
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYG---HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRR 71 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G---~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~ 71 (742)
|+++|.||+==.+-|++.+.++| .+|+++++-.|.-. ....|+..|||.+...
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~-----------------~~~~A~~~gIp~~~~~ 56 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCG-----------------GAEYARENGIPVLVYP 56 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCCCCh-----------------HHHHHHHhCCCEEEec
Confidence 68999999988888999999887 36777766543221 3557999999998764
No 149
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=67.74 E-value=18 Score=43.20 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=54.1
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCC------------cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEE
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGH------------QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFR 69 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~------------~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~ 69 (742)
++.+++|||-||..=+..|.+... ++.+. ++ .-++ ..=...++..|+.+|.++..
T Consensus 239 pvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tf-si-g~~~-----------~~D~~~Ar~vA~~lg~~h~~ 305 (586)
T PTZ00077 239 PFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSF-CI-GLEG-----------SPDLKAARKVAEYLGTEHHE 305 (586)
T ss_pred ceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEE-Ec-CCCC-----------CchHHHHHHHHHHhCCcCcE
Confidence 478999999999977666655421 22221 11 1000 11234588899999999977
Q ss_pred EecCCCcccc---cc-----cccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccc
Q 004613 70 RRIHGSTRHQ---KL-----SYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIA 117 (742)
Q Consensus 70 ~~i~g~~~~~---~~-----~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~ 117 (742)
+.++....-. .. .|..+...----++.+-+.+++. |++.|.+|.-.
T Consensus 306 i~~~~~e~~~~l~~~i~~le~~~~~~~~~~~p~yll~r~a~~~--gvkVvLsGeGa 359 (586)
T PTZ00077 306 FTFTVEEGIDALPDVIYHTETYDVTTIRASTPMYLLSRRIKAL--GIKMVLSGEGS 359 (586)
T ss_pred EEECHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhc--CCeEEEecCch
Confidence 7654211000 00 11111111122344444555554 79999998854
No 150
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=66.28 E-value=10 Score=38.35 Aligned_cols=117 Identities=18% Similarity=0.264 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHcCCcEEEEE---EeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCC
Q 004613 10 GKDSCYAMMKCIQYGHQIVALA---NLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMT 86 (742)
Q Consensus 10 GKDS~~al~~~~~~G~~vv~L~---~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~ 86 (742)
|=||++.+-++.+.|++|++.. |++|... | .--.+.++..|+.+|||++..+-.- ..-+...
T Consensus 8 aPCs~~~~~~L~~~g~~vt~~fyNPNIhP~~E-------y---~~R~~~~~~~~~~~~i~~i~~~Y~~-----~~w~~~v 72 (176)
T PF02677_consen 8 APCSTYPLERLREEGFDVTGYFYNPNIHPYEE-------Y---ERRLEELKRFAEKLGIPLIEGDYDP-----EEWLRAV 72 (176)
T ss_pred ccccHHHHHHHHHCCCCeEEEEeCCCCCcHHH-------H---HHHHHHHHHHHHHcCCCEEecCCCH-----HHHHHHH
Confidence 6689999999999999999884 4566542 1 1123457889999999998764210 0000001
Q ss_pred Cc--ch-----------HHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHH-----HHHHhhcCCeEeeecccc
Q 004613 87 PG--DE-----------VEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRV-----ESVCSRLGLVSLAYLWKQ 143 (742)
Q Consensus 87 ~~--de-----------~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rv-----e~vc~rlgl~~l~pLW~~ 143 (742)
.+ +| --.|.+.-+..++. |.++++|==..|-||.... ++++++.|+.-+..=|+.
T Consensus 73 ~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~--gfd~FtTTL~~Sp~k~~~~I~~iG~~~~~~~gv~f~~~DfRk 145 (176)
T PF02677_consen 73 KGLEDEPEGGKRCRVCYDLRLEKTAQYAKEL--GFDYFTTTLLISPYKNHELINEIGERLAKEYGVEFLYRDFRK 145 (176)
T ss_pred hhCccCCccCchhHHHHHHHHHHHHHHHHHc--CCCEEEccccCcCccCHHHHHHHHHHHHHhhCCeEEeecccc
Confidence 11 11 12334444444443 7777777766677765422 223444455555444444
No 151
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=65.03 E-value=1.9e+02 Score=30.63 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=90.0
Q ss_pred HHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHH
Q 004613 17 MMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYI 96 (742)
Q Consensus 17 l~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~ 96 (742)
+-+..++|.+=+.++.+--.. +-+..+.++++..++..++|+.. .|.- .-.++..+
T Consensus 36 a~~~~~~g~~~l~i~Dl~~~~---------~~~~~n~~~i~~i~~~~~~pv~~---gGGi------------~s~~d~~~ 91 (258)
T PRK01033 36 VRIFNEKEVDELIVLDIDASK---------RGSEPNYELIENLASECFMPLCY---GGGI------------KTLEQAKK 91 (258)
T ss_pred HHHHHHcCCCEEEEEECCCCc---------CCCcccHHHHHHHHHhCCCCEEE---CCCC------------CCHHHHHH
Confidence 345556786656666552211 23677899999999999999732 2321 11244444
Q ss_pred HHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcC-----------------CeEeeeccc----cCHHHHHHHHHHc
Q 004613 97 LLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLG-----------------LVSLAYLWK----QDQSLLLQEMITN 155 (742)
Q Consensus 97 ~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlg-----------------l~~l~pLW~----~d~~~ll~em~~~ 155 (742)
++ .. |+++|+.|-.+.+ ....+++++++.| .......|+ .+..++++++.+.
T Consensus 92 l~----~~--G~~~vvigs~~~~-~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~ 164 (258)
T PRK01033 92 IF----SL--GVEKVSINTAALE-DPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEAL 164 (258)
T ss_pred HH----HC--CCCEEEEChHHhc-CHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHc
Confidence 44 11 8999999965422 2345667776654 244556674 4677999999999
Q ss_pred CCcEEEE-EEecCCCCCccccCccccchhHHHHHhhhhcCCccccCCc
Q 004613 156 GINAITV-KVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 202 (742)
Q Consensus 156 G~~a~ii-~Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 202 (742)
|+..+++ .+...|.. -|. + .+.+.++.+...+.+..-||
T Consensus 165 g~~~ii~~~i~~~G~~----~G~--d--~~~i~~~~~~~~ipvIasGG 204 (258)
T PRK01033 165 GAGEILLNSIDRDGTM----KGY--D--LELLKSFRNALKIPLIALGG 204 (258)
T ss_pred CCCEEEEEccCCCCCc----CCC--C--HHHHHHHHhhCCCCEEEeCC
Confidence 9997776 35555643 243 3 45566666655565665555
No 152
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=63.22 E-value=32 Score=41.08 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=54.5
Q ss_pred eEEEEeeCchHHHHHHHHHHHcC----------CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEe
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYG----------HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRR 71 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G----------~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~ 71 (742)
.+.+++|||-||.+=+..|.+.- ..+.. +++ +-.+ ..-....+..|+.+|.++..+.
T Consensus 227 pvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~t-fsi-g~~~-----------~~D~~~Ar~vA~~lg~~h~ev~ 293 (578)
T PLN02549 227 PFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHS-FCV-GLEG-----------SPDLKAAREVADYLGTVHHEFH 293 (578)
T ss_pred ceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceE-Eec-CCCC-----------CCHHHHHHHHHHHhCCCCeEEE
Confidence 47899999999998777665531 12222 111 1110 1123457889999999998877
Q ss_pred cCCCccc---cccccc-----CCCcchHHHHHHHHHHHHhhCCCceEEEEcccch
Q 004613 72 IHGSTRH---QKLSYR-----MTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIAS 118 (742)
Q Consensus 72 i~g~~~~---~~~~Y~-----~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s 118 (742)
+.....- ...-|. ++...----++-+-+.+++. |++.|.+|.-..
T Consensus 294 ~~~~e~~~~l~~~i~~le~~dp~~~~~s~p~yll~r~a~~~--gvkVvLsGeGaD 346 (578)
T PLN02549 294 FTVQEGIDAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSL--GVKMVLSGEGSD 346 (578)
T ss_pred EChHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhc--CCEEEEecCchH
Confidence 6532110 011121 11000111233333345544 899999998653
No 153
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=59.99 E-value=2.3e+02 Score=30.08 Aligned_cols=102 Identities=16% Similarity=0.089 Sum_probs=62.1
Q ss_pred HHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhh-CCC-ceEEEEcccchhhHHHHH---HHHHh
Q 004613 56 IVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQ-IPS-VTAVSSGAIASDYQRLRV---ESVCS 130 (742)
Q Consensus 56 i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~-~~~-i~~v~~GaI~s~yqr~rv---e~vc~ 130 (742)
+..+.+. |+|++...-.... . .......-|..+.-+.+.+.+.++ |-. | +++.|.-.....+.|. ++.++
T Consensus 72 l~~~~~~-~iPvV~~~~~~~~--~-~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I-~~i~~~~~~~~~~~R~~Gy~~Al~ 146 (279)
T PF00532_consen 72 LRRLIKS-GIPVVLIDRYIDN--P-EGVPSVYIDNYEAGYEATEYLIKKGHRRPI-AFIGGPEDSSTSRERLQGYRDALK 146 (279)
T ss_dssp HHHHHHT-TSEEEEESS-SCT--T-CTSCEEEEEHHHHHHHHHHHHHHTTCCSTE-EEEEESTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCEEEEEeccCC--c-ccCCEEEEcchHHHHHHHHHHHhcccCCeE-EEEecCcchHHHHHHHHHHHHHHH
Confidence 6666666 9999887533111 0 012222467888888888887765 323 3 6777766554555554 67889
Q ss_pred hcCC--eEeeecccc----CHHHHHHHHHHcC--CcEEEE
Q 004613 131 RLGL--VSLAYLWKQ----DQSLLLQEMITNG--INAITV 162 (742)
Q Consensus 131 rlgl--~~l~pLW~~----d~~~ll~em~~~G--~~a~ii 162 (742)
+.|+ ....-.+.. +..++++++++.+ ++|++.
T Consensus 147 ~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~ 186 (279)
T PF00532_consen 147 EAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFC 186 (279)
T ss_dssp HTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred HcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 9999 222223332 3448899999987 447765
No 154
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=58.50 E-value=23 Score=40.50 Aligned_cols=59 Identities=25% Similarity=0.386 Sum_probs=38.2
Q ss_pred eEEEEeeCchHHHHHHHHHHHc-C-CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEe
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY-G-HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRR 71 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~-G-~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~ 71 (742)
+++.+.|||-||..+...+.+. | +++.|.. .++ -+|=+.-...+-+.... ||||+.++.
T Consensus 232 ~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~----vdN------G~mrk~Ea~~V~~tl~~-lgi~i~v~~ 292 (552)
T KOG1622|consen 232 KVLVAVSGGVDSTVCAALLRRALGPDRVHAIH----VDN------GFMRKKEAEQVEKTLVY-LGIPITVVD 292 (552)
T ss_pred ceEEEecCCchHHHHHHHHHHhhCCCceEEEE----ecc------cchhhhHHHHHHHHHHH-cCCceEEee
Confidence 6899999999999877655544 5 6766652 222 24433333334445555 999998884
No 155
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=57.68 E-value=52 Score=33.54 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=51.3
Q ss_pred eCchHHHHHHH--HHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccC
Q 004613 8 SGGKDSCYAMM--KCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRM 85 (742)
Q Consensus 8 SGGKDS~~al~--~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~ 85 (742)
.-||-++.|=+ ++..+|+. |+|+++ |. |+--+.+-++.+|+.||+|++....
T Consensus 11 GvGKTTt~aKLAa~~~~~~~~-v~lis~----------D~--~R~ga~eQL~~~a~~l~vp~~~~~~------------- 64 (196)
T PF00448_consen 11 GVGKTTTIAKLAARLKLKGKK-VALISA----------DT--YRIGAVEQLKTYAEILGVPFYVART------------- 64 (196)
T ss_dssp TSSHHHHHHHHHHHHHHTT---EEEEEE----------ST--SSTHHHHHHHHHHHHHTEEEEESST-------------
T ss_pred CCchHhHHHHHHHHHhhcccc-ceeecC----------CC--CCccHHHHHHHHHHHhccccchhhc-------------
Confidence 35999987754 44455654 888886 33 4566778899999999999987532
Q ss_pred CCcchHHHHHHHHHHHHhhCCCceEEE
Q 004613 86 TPGDEVEDMYILLNEVKRQIPSVTAVS 112 (742)
Q Consensus 86 ~~~de~e~l~~~L~~vk~~~~~i~~v~ 112 (742)
..|..+.+.++|++.+.+ +.+.|.
T Consensus 65 -~~~~~~~~~~~l~~~~~~--~~D~vl 88 (196)
T PF00448_consen 65 -ESDPAEIAREALEKFRKK--GYDLVL 88 (196)
T ss_dssp -TSCHHHHHHHHHHHHHHT--TSSEEE
T ss_pred -chhhHHHHHHHHHHHhhc--CCCEEE
Confidence 235566677788877664 555553
No 156
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=56.69 E-value=75 Score=34.82 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=36.6
Q ss_pred CeEEEEeeCchHHHHHHHH-HHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEE
Q 004613 1 MKVVALVSGGKDSCYAMMK-CIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRR 70 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~-~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~ 70 (742)
||++.+ |.-+.....+. ++++||+|++++|--+.....+. . ....-+...|+..|||++..
T Consensus 1 mkIvf~--Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~--~-----~~~~~v~~~A~~~~Ipv~~~ 62 (313)
T TIGR00460 1 LRIVFF--GTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGK--K-----LTPPPVKVLAEEKGIPVFQP 62 (313)
T ss_pred CEEEEE--CCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCC--C-----CCCChHHHHHHHcCCCEEec
Confidence 776555 44444455554 45678999998886443211111 1 11223788899999999764
No 157
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=56.36 E-value=2.5e+02 Score=29.02 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=81.1
Q ss_pred EEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeE--EEecCCC------c
Q 004613 5 ALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLF--RRRIHGS------T 76 (742)
Q Consensus 5 al~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~--~~~i~g~------~ 76 (742)
+.++||-.|.-.+..+.+.|.+.+.+-+..-. +.+++....+..|-+.+ ...+... .
T Consensus 77 v~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~---------------~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~ 141 (232)
T TIGR03572 77 LTVGGGIRSLEDAKKLLSLGADKVSINTAALE---------------NPDLIEEAARRFGSQCVVVSIDVKKELDGSDYK 141 (232)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEChhHhc---------------CHHHHHHHHHHcCCceEEEEEEeccCCCCCcEE
Confidence 57899999999998888888776655332211 13456666676665532 2233221 0
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchh-----hHHHHHHHHHhhcCCeEeeeccccCHHHHHHH
Q 004613 77 RHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASD-----YQRLRVESVCSRLGLVSLAYLWKQDQSLLLQE 151 (742)
Q Consensus 77 ~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~-----yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~e 151 (742)
+... .+...... +..++.+.+.+. |++.++.-++..+ +....++++++..++...+==.-++.+.+.+-
T Consensus 142 v~~~-~~~~~~~~---~~~~~~~~~~~~--G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~ 215 (232)
T TIGR03572 142 VYSD-NGRRATGR---DPVEWAREAEQL--GAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEV 215 (232)
T ss_pred EEEC-CCcccCCC---CHHHHHHHHHHc--CCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHH
Confidence 0000 01000112 233444555444 8999998887643 45677788888877654444444455555544
Q ss_pred HHHcCCcEEEEEEe
Q 004613 152 MITNGINAITVKVA 165 (742)
Q Consensus 152 m~~~G~~a~ii~Va 165 (742)
+...|.+.+++..+
T Consensus 216 l~~~gadgV~vg~a 229 (232)
T TIGR03572 216 ALEAGASAVAAASL 229 (232)
T ss_pred HHHcCCCEEEEehh
Confidence 77789998888653
No 158
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=55.96 E-value=64 Score=35.23 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=35.9
Q ss_pred CeEEEEeeCchHHHHHHHHHHH-cCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEE
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQ-YGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFR 69 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~-~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~ 69 (742)
||++.+ |--+....++.++. .||++++++|--+.....+. . ....-+..+|+..|||++.
T Consensus 1 mkIvf~--G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~--~-----~~~~~v~~~a~~~~Ip~~~ 61 (309)
T PRK00005 1 MRIVFM--GTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGK--K-----LTPSPVKQLALEHGIPVLQ 61 (309)
T ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCC--C-----CCCCHHHHHHHHcCCCEEC
Confidence 786655 43445556665554 49999998876333211110 1 1112377899999999865
No 159
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=55.30 E-value=35 Score=40.46 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=39.1
Q ss_pred eEEEEeeCchHHHHHHHHHHHcC-CcEEEEEEe-ecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYG-HQIVALANL-MPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G-~~vv~L~~~-~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
.+.+++|||-||.+-...+.+.. .+.....++ ++..+ ..=.+..+..|+.||.|+....+.
T Consensus 232 pvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~-----------~~D~~~a~~~A~~lg~~h~~~~~~ 294 (542)
T COG0367 232 PVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSD-----------SPDAKYARAVAKFLGTPHHEIILT 294 (542)
T ss_pred cEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCC-----------CchHHHHHHHHHHhCCCcEEEeec
Confidence 47899999999998776666552 222211222 12110 112355889999999999888775
No 160
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=54.86 E-value=84 Score=35.93 Aligned_cols=45 Identities=18% Similarity=0.416 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEEEEEE
Q 004613 92 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKV 164 (742)
Q Consensus 92 e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ii~V 164 (742)
+.+.+.++++|+++|++. |+.|++.+- +-...+++.|++++.+.+
T Consensus 179 ~~~~~~v~~ik~~~p~~~-vi~g~V~T~---------------------------e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 179 TRIIELVKKIKTKYPNLD-LIAGNIVTK---------------------------EAALDLISVGADCLKVGI 223 (404)
T ss_pred hhHHHHHHHHHhhCCCCc-EEEEecCCH---------------------------HHHHHHHHcCCCEEEECC
Confidence 355666777777777665 666777643 335667888999988533
No 161
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=52.87 E-value=32 Score=39.98 Aligned_cols=55 Identities=11% Similarity=0.133 Sum_probs=32.2
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCC--cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEE
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGH--QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRR 70 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~--~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~ 70 (742)
++++.+|||||+.+ ++.+.+.+- +|+.|=|- |.|.. -.+..+..++.+|+++...
T Consensus 117 ~iavasSG~edsvL-lhl~~~~~~~ipV~flDTG------------~lFpE-Ty~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 117 DIAIAFSGAEDVAL-IEYAHLTGRPFRVFSLDTG------------RLNPE-TYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred CEEEEeccHHHHHH-HHHHHHhCCCCcEEEecCC------------CCCHH-HHHHHHHHHHHhCCceEEE
Confidence 57889999999974 333333343 33333111 11111 1345788888899998765
No 162
>COG2403 Predicted GTPase [General function prediction only]
Probab=51.38 E-value=1.9e+02 Score=32.95 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=90.4
Q ss_pred CeEEEEeeCchHHHHHHHHHHHc-CCcEEEE-EEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQY-GHQIVAL-ANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRH 78 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~-G~~vv~L-~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~ 78 (742)
||+++|.-||.|=--.=.-...+ -|+++++ ++.+|... +++-+. -++-.-..+|+|++...
T Consensus 7 kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~--er~ypp--------sleg~~~p~Gvpi~~~k------- 69 (449)
T COG2403 7 KRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGT--ERIYPP--------SLEGVLYPLGVPILPEK------- 69 (449)
T ss_pred eeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCc--cccCCC--------CcccccccCCccccccc-------
Confidence 47899999999843222222222 3899987 66677442 122110 03334467899985441
Q ss_pred ccccccCCCcchHHHHHHHHHHHHhhCCCce--EEEEcccchhhHHHHHHHHHhhcCCeEeeeccccC------------
Q 004613 79 QKLSYRMTPGDEVEDMYILLNEVKRQIPSVT--AVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQD------------ 144 (742)
Q Consensus 79 ~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~--~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d------------ 144 (742)
| +++|.+.++ ++ +|+ .+..-| +|-.||-|+-+..-..|..- .+.+-.
T Consensus 70 ----------~-~~~lek~ir----e~-~VD~~VlaySD-vs~e~v~~IaS~vLs~GA~f--~~~gP~et~~~~ekPvia 130 (449)
T COG2403 70 ----------D-YDDLEKIIR----EK-DVDIVVLAYSD-VSYEHVFRIASRVLSAGADF--KELGPKETMLKLEKPVIA 130 (449)
T ss_pred ----------c-HHHHHHHHH----Hc-CCCeEEEEccc-CCHHHHHHHHHHHHhCCcee--EEeCccHHhhhhcCceEE
Confidence 1 344444444 43 676 334455 56678888777666666532 122211
Q ss_pred -------------HHHHHHHHHHcCCcEEEEEEecCCCCCccccCccccchhHHHHHhhhhcCCcccc--CCceeEEEe
Q 004613 145 -------------QSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCG--EGGEYETLT 208 (742)
Q Consensus 145 -------------~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cG--EgGEyeTlv 208 (742)
...+.+.|-+.|++..+|.- |.-.-|-++...-++|.++.++ |.|-|- |.-|||.-+
T Consensus 131 V~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh------Pmiy~~~~ieitve~~~k~edl-d~ha~t~eereeye~~I 202 (449)
T COG2403 131 VTATRTGVGKSAVSRYVARLLRERGYRVCVVRH------PMIYRGDRIEITVERLAKLEDL-DRHAATDEEREEYESYI 202 (449)
T ss_pred EEEeccccchhHHHHHHHHHHHHcCCceEEEec------CceecCCchhhhHHHHhCHhhc-cccccchhhHHHHhhcc
Confidence 33556677778888777754 2234455555445677776653 444442 444555443
No 163
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=50.55 E-value=60 Score=37.57 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=53.3
Q ss_pred HHHHHHHcCCcEEEEEEeecCCCCC---C-ccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchH
Q 004613 16 AMMKCIQYGHQIVALANLMPADDSV---D-ELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEV 91 (742)
Q Consensus 16 al~~~~~~G~~vv~L~~~~p~~~~~---~-~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~ 91 (742)
||..|.+.| +|++|.-+-|..-.. . ....|+++++.. +...=+.+|++|+.... |. -
T Consensus 15 aL~~A~~~~-~vlpvyi~dp~~~~~~~~~~~~~~fl~~sL~~--L~~~L~~~G~~L~v~~~-g~--------------~- 75 (475)
T TIGR02766 15 ALAAAARAG-PVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAH--LDQSLRSLGTCLVTIRS-TD--------------T- 75 (475)
T ss_pred HHHHHHhCC-CEEEEEEechHHhccccccHHHHHHHHHHHHH--HHHHHHHcCCceEEEeC-CC--------------H-
Confidence 667777777 888888765542100 0 011144443321 33334457999997641 21 1
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccchhhHHHH---HHHHHhhcCCeE
Q 004613 92 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLR---VESVCSRLGLVS 136 (742)
Q Consensus 92 e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~r---ve~vc~rlgl~~ 136 (742)
.+.|.++.+++ +|+.|.+-.-..-|.+.| |++.|.+.|++.
T Consensus 76 ---~~~l~~l~~~~-~i~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 119 (475)
T TIGR02766 76 ---VAALLDCVRST-GATRLFFNHLYDPVSLVRDHRAKEVLTAQGISV 119 (475)
T ss_pred ---HHHHHHHHHHc-CCCEEEEecccCHHHHHHHHHHHHHHHHcCCEE
Confidence 22344444555 899998777666665555 344444445544
No 164
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=50.52 E-value=1.3e+02 Score=31.12 Aligned_cols=56 Identities=27% Similarity=0.364 Sum_probs=42.2
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcC---CcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYG---HQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G---~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
||+++|.||+=--+-|+..+.+.| -+|++++.=.| |.| .-.-|+..|||-+...-+
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~--------~A~---------~lerA~~~gIpt~~~~~k 59 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKA--------DAY---------ALERAAKAGIPTVVLDRK 59 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCC--------CCH---------HHHHHHHcCCCEEEeccc
Confidence 799999999999999999999877 36777766432 343 344588899998766543
No 165
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=50.47 E-value=3.2e+02 Score=28.65 Aligned_cols=147 Identities=17% Similarity=0.175 Sum_probs=89.0
Q ss_pred HHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHH
Q 004613 19 KCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILL 98 (742)
Q Consensus 19 ~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L 98 (742)
.+...|.+-+.++.+-.. -+.+..+.++++..++..++|+..- |+- ...+++.+++
T Consensus 38 ~~~~~G~~~i~i~dl~~~---------~~~~~~~~~~i~~i~~~~~ipv~~~---GGi------------~s~~~~~~~l 93 (253)
T PRK02083 38 RYNEEGADELVFLDITAS---------SEGRDTMLDVVERVAEQVFIPLTVG---GGI------------RSVEDARRLL 93 (253)
T ss_pred HHHHcCCCEEEEEeCCcc---------cccCcchHHHHHHHHHhCCCCEEee---CCC------------CCHHHHHHHH
Confidence 444678766666666332 2356778999999999999997543 321 1234555555
Q ss_pred HHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcC----C--------------eEeeecccc----CHHHHHHHHHHcC
Q 004613 99 NEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLG----L--------------VSLAYLWKQ----DQSLLLQEMITNG 156 (742)
Q Consensus 99 ~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlg----l--------------~~l~pLW~~----d~~~ll~em~~~G 156 (742)
.. |+++|+.|-.+... -..++++.++.| . +...-.|.. +..++.+++.+.|
T Consensus 94 ~~------Ga~~Viigt~~l~~-p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g 166 (253)
T PRK02083 94 RA------GADKVSINSAAVAN-PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELG 166 (253)
T ss_pred Hc------CCCEEEEChhHhhC-cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcC
Confidence 41 88999998765332 245666666655 1 222334654 4568889999999
Q ss_pred CcEEEE-EEecCCCCCccccCccccchhHHHHHhhhhcCCccccCCcee
Q 004613 157 INAITV-KVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEY 204 (742)
Q Consensus 157 ~~a~ii-~Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGEy 204 (742)
++.+|+ .++..|-.. | ++ .+.+.++.+..++-+...||-.
T Consensus 167 ~~~ii~~~i~~~g~~~----g--~d--~~~i~~~~~~~~ipvia~GGv~ 207 (253)
T PRK02083 167 AGEILLTSMDRDGTKN----G--YD--LELTRAVSDAVNVPVIASGGAG 207 (253)
T ss_pred CCEEEEcCCcCCCCCC----C--cC--HHHHHHHHhhCCCCEEEECCCC
Confidence 987765 344444321 2 23 4555666655456666666643
No 166
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=49.43 E-value=90 Score=37.74 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=36.3
Q ss_pred CeEEEEeeCchHHHHHHH-HHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEE
Q 004613 1 MKVVALVSGGKDSCYAMM-KCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRR 70 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~-~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~ 70 (742)
||+|.+ |--+-....+ .+++.||+|++++|.-+... +. ....-+..+|+..|||++..
T Consensus 1 mkivf~--g~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~--~~--------~~~~~v~~~a~~~~ip~~~~ 59 (660)
T PRK08125 1 MKAVVF--AYHDIGCVGIEALLAAGYEIAAVFTHTDNPG--EN--------HFFGSVARLAAELGIPVYAP 59 (660)
T ss_pred CeEEEE--CCCHHHHHHHHHHHHCCCcEEEEEeCCCCCc--CC--------CCcCHHHHHHHHcCCcEEee
Confidence 786555 4444444444 45567999999888643321 10 11123778899999999864
No 167
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=48.53 E-value=1e+02 Score=30.67 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=54.8
Q ss_pred eCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCC
Q 004613 8 SGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTP 87 (742)
Q Consensus 8 SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~ 87 (742)
-+|-|=+-|+..|.+.| +=++++.....- +. +...++.+|+++....+.
T Consensus 61 ~s~~Dil~al~~a~~~~-~~Iavv~~~~~~------~~----------~~~~~~ll~~~i~~~~~~-------------- 109 (176)
T PF06506_consen 61 ISGFDILRALAKAKKYG-PKIAVVGYPNII------PG----------LESIEELLGVDIKIYPYD-------------- 109 (176)
T ss_dssp --HHHHHHHHHHCCCCT-SEEEEEEESS-S------CC----------HHHHHHHHT-EEEEEEES--------------
T ss_pred CCHhHHHHHHHHHHhcC-CcEEEEeccccc------HH----------HHHHHHHhCCceEEEEEC--------------
Confidence 34555556666665444 456776652211 11 667899999998877653
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEe
Q 004613 88 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSL 137 (742)
Q Consensus 88 ~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l 137 (742)
..+++...+++++++ |++.|+-|... .+.|+++|+...
T Consensus 110 --~~~e~~~~i~~~~~~--G~~viVGg~~~--------~~~A~~~gl~~v 147 (176)
T PF06506_consen 110 --SEEEIEAAIKQAKAE--GVDVIVGGGVV--------CRLARKLGLPGV 147 (176)
T ss_dssp --SHHHHHHHHHHHHHT--T--EEEESHHH--------HHHHHHTTSEEE
T ss_pred --CHHHHHHHHHHHHHc--CCcEEECCHHH--------HHHHHHcCCcEE
Confidence 135778888888887 99998888764 456889999853
No 168
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=48.31 E-value=17 Score=39.67 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=28.0
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEE-EEe
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVAL-ANL 33 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L-~~~ 33 (742)
++|.-+|||-|-..-+.++.++||+|+|. +|+
T Consensus 7 ~vVLAySGgLDTscil~WLkeqGyeViay~Anv 39 (412)
T KOG1706|consen 7 SVVLAYSGGLDTSCILAWLKEQGYEVIAYLANV 39 (412)
T ss_pred eEEEEecCCcCchhhhHHHHhcCceEEEeeccc
Confidence 46789999999999999999999999985 555
No 169
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=47.55 E-value=3.9e+02 Score=28.68 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=80.0
Q ss_pred eEEEEeeCch--HHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCH--HHHHHHHHHcCCCeEEEecCCCcc
Q 004613 2 KVVALVSGGK--DSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGH--QIIVSYAECMGLPLFRRRIHGSTR 77 (742)
Q Consensus 2 k~val~SGGK--DS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~--~~i~~~A~algiPl~~~~i~g~~~ 77 (742)
.+++.+.|.. |=.-++.++.+.|.+.+-| |+.-+..+. +-+.+ .+.+.. ++++..-++.++|+... ++.
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iEl-N~~cP~~~~-~g~~~-~~~~~~~~eiv~~vr~~~~~Pv~vK-l~~--- 163 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIEL-NISCPNVKG-GGMAF-GTDPEAVAEIVKAVKKATDVPVIVK-LTP--- 163 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEE-ECCCCCCCC-Ccccc-cCCHHHHHHHHHHHHhccCCCEEEE-eCC---
Confidence 3667777753 3333444566667775554 444333211 11233 244432 56777777779998765 431
Q ss_pred cccccccCCCcchHHHHHHHHHHHHhhCCCceEEEE-----c---cc-------------c-----hhhHHHHHHHHHhh
Q 004613 78 HQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSS-----G---AI-------------A-----SDYQRLRVESVCSR 131 (742)
Q Consensus 78 ~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~-----G---aI-------------~-----s~yqr~rve~vc~r 131 (742)
..++..++.+.+.+. |+++|+. | |. + ..+...++..+.+.
T Consensus 164 ---------~~~~~~~~a~~~~~~-----G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~ 229 (296)
T cd04740 164 ---------NVTDIVEIARAAEEA-----GADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA 229 (296)
T ss_pred ---------CchhHHHHHHHHHHc-----CCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh
Confidence 112344444444432 7887754 1 11 0 11123455666666
Q ss_pred cCCeEeeeccccCHHHHHHHHHHcCCcEEEEEEecCCCCC
Q 004613 132 LGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEP 171 (742)
Q Consensus 132 lgl~~l~pLW~~d~~~ll~em~~~G~~a~ii~Va~~gL~~ 171 (742)
+++ ++.--=+....+-+.++++.|.+++-+.-+... +|
T Consensus 230 ~~i-pii~~GGI~~~~da~~~l~~GAd~V~igra~l~-~p 267 (296)
T cd04740 230 VEI-PIIGVGGIASGEDALEFLMAGASAVQVGTANFV-DP 267 (296)
T ss_pred cCC-CEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-Ch
Confidence 653 233344455667778888899888888776666 76
No 170
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=47.47 E-value=91 Score=33.79 Aligned_cols=120 Identities=11% Similarity=0.170 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHH---HHHHHHHc-CCCeEEEecCCCcccccccccCC
Q 004613 11 KDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQI---IVSYAECM-GLPLFRRRIHGSTRHQKLSYRMT 86 (742)
Q Consensus 11 KDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~---i~~~A~al-giPl~~~~i~g~~~~~~~~Y~~~ 86 (742)
+|++-.+.++.+.|.+-+.++. |.- |+.--.++ ...+|++. ++|++.+.+++... +.-
T Consensus 82 ~~ai~~a~~A~~~Gad~v~v~p--P~y----------~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg-----~~l- 143 (294)
T TIGR02313 82 DETLELTKFAEEAGADAAMVIV--PYY----------NKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAA-----QEI- 143 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEEcC--ccC----------CCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcC-----cCC-
Confidence 4666666777888866544432 211 11111222 45678899 99999998875321 100
Q ss_pred CcchHHHHHHHHHHHHhhCCCceEE--EEcccchhhHHHHHHHHHhhc--CCeEeeeccccCHHHHHHHHHHcCCcEEEE
Q 004613 87 PGDEVEDMYILLNEVKRQIPSVTAV--SSGAIASDYQRLRVESVCSRL--GLVSLAYLWKQDQSLLLQEMITNGINAITV 162 (742)
Q Consensus 87 ~~de~e~l~~~L~~vk~~~~~i~~v--~~GaI~s~yqr~rve~vc~rl--gl~~l~pLW~~d~~~ll~em~~~G~~a~ii 162 (742)
. .++|.++.+++|.|-++ ++||+.. +.++..+. ++..+. +. +.++-.....|.+..|.
T Consensus 144 ---~----~~~l~~L~~~~pnv~giK~ss~d~~~------~~~~~~~~~~~~~v~~---G~--d~~~~~~l~~Ga~G~is 205 (294)
T TIGR02313 144 ---A----PKTMARLRKDCPNIVGAKESNKDFEH------LNHLFLEAGRDFLLFC---GI--ELLCLPMLAIGAAGSIA 205 (294)
T ss_pred ---C----HHHHHHHHhhCCCEEEEEeCCCCHHH------HHHHHHhcCCCeEEEE---cc--hHHHHHHHHCCCCEEEe
Confidence 0 23556666667888876 5677632 12222222 333333 33 35555677889999988
Q ss_pred EEec
Q 004613 163 KVAA 166 (742)
Q Consensus 163 ~Va~ 166 (742)
.++.
T Consensus 206 ~~~n 209 (294)
T TIGR02313 206 ATAN 209 (294)
T ss_pred cHHh
Confidence 7653
No 171
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=47.25 E-value=28 Score=32.96 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=19.1
Q ss_pred CeEEEEee------CchHHHHHHHH-HHHcCCcEEEE
Q 004613 1 MKVVALVS------GGKDSCYAMMK-CIQYGHQIVAL 30 (742)
Q Consensus 1 Mk~val~S------GGKDS~~al~~-~~~~G~~vv~L 30 (742)
||++.++- =.|||+++|++ |.+.||+|...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~ 37 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYY 37 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEE
Confidence 56555543 37999999985 56679998654
No 172
>PRK06988 putative formyltransferase; Provisional
Probab=46.73 E-value=1.3e+02 Score=33.08 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=34.2
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEE
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFR 69 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~ 69 (742)
||++.+ .-+.=+.-+|-.+++.||+|++++|--+... +. +...-+...|+..|||++.
T Consensus 3 mkIvf~-Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~--~~--------~~~~~v~~~A~~~gip~~~ 60 (312)
T PRK06988 3 PRAVVF-AYHNVGVRCLQVLLARGVDVALVVTHEDNPT--EN--------IWFGSVAAVAAEHGIPVIT 60 (312)
T ss_pred cEEEEE-eCcHHHHHHHHHHHhCCCCEEEEEcCCCCCc--cC--------cCCCHHHHHHHHcCCcEEc
Confidence 455544 3333233345556678999999877532221 11 1112377889999999875
No 173
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.38 E-value=1e+02 Score=35.51 Aligned_cols=94 Identities=13% Similarity=-0.007 Sum_probs=54.3
Q ss_pred HHHHHHH----cCCcEEEEEEeecCCCC-CCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcch
Q 004613 16 AMMKCIQ----YGHQIVALANLMPADDS-VDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDE 90 (742)
Q Consensus 16 al~~~~~----~G~~vv~L~~~~p~~~~-~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de 90 (742)
||..|.+ .|.+|+++..+-|.... ...--.||+|++ .-+...-+.+|+||+... | +-
T Consensus 40 aL~~A~~~a~~~~~~vl~vyi~dp~~~~~~~~r~~Fl~esL--~~L~~~L~~~g~~L~v~~--g--------------~~ 101 (454)
T TIGR00591 40 ALIAAQTLALKKKLPLHVCFCLVDFFLAATRRHYFFMLGGL--DEVANECERLIIPFHLLD--G--------------PP 101 (454)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeCCCcccccHHHHHHHHHHH--HHHHHHHHHcCCceEEee--c--------------Ch
Confidence 4445533 36678888766553211 111123444333 224445566899998773 2 22
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhc
Q 004613 91 VEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL 132 (742)
Q Consensus 91 ~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rl 132 (742)
.+.+. ++.+++ +|++|.+-.-...|.+.|.+.|.+.+
T Consensus 102 ~~~l~----~l~~~~-~i~~V~~~~~~~~~~~~rd~~v~~~l 138 (454)
T TIGR00591 102 KELLP----YFVDLH-AAAAVVTDFSPLRQPEQWDEAVGKLL 138 (454)
T ss_pred HHHHH----HHHHHc-CCCEEEEecccCcHHHHHHHHHHHHh
Confidence 22333 333445 89999998888888888877776555
No 174
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=44.99 E-value=99 Score=31.19 Aligned_cols=121 Identities=20% Similarity=0.294 Sum_probs=75.5
Q ss_pred HHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEe
Q 004613 58 SYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSL 137 (742)
Q Consensus 58 ~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l 137 (742)
..=++.|+-=+..++.. +-..|. ..+-.+++.+-+.++|++ |+.-++ .|+-.+.||..++.++|+.-+
T Consensus 21 ~~L~~~Gikgvi~DlDN----TLv~wd--~~~~tpe~~~W~~e~k~~--gi~v~v----vSNn~e~RV~~~~~~l~v~fi 88 (175)
T COG2179 21 DILKAHGIKGVILDLDN----TLVPWD--NPDATPELRAWLAELKEA--GIKVVV----VSNNKESRVARAAEKLGVPFI 88 (175)
T ss_pred HHHHHcCCcEEEEeccC----ceeccc--CCCCCHHHHHHHHHHHhc--CCEEEE----EeCCCHHHHHhhhhhcCCcee
Confidence 34455677666555542 222232 223345666667777776 777664 577788999999999999755
Q ss_pred eecccc--------------CH-------HHHHHHHH---HcCCcEEEEE--EecCCCCCccccCccccchhHHHHHhhh
Q 004613 138 AYLWKQ--------------DQ-------SLLLQEMI---TNGINAITVK--VAAMGLEPGKHLGKEIAFLDPYLHKLKE 191 (742)
Q Consensus 138 ~pLW~~--------------d~-------~~ll~em~---~~G~~a~ii~--Va~~gL~~~~~lG~~l~~~~~~l~~l~~ 191 (742)
++-=+- +. .+|+.+.. .+|+..|+|+ +++.|+. .+++|.+. ...+.+|.+
T Consensus 89 ~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~--t~~nR~~E--r~v~~~l~~ 164 (175)
T COG2179 89 YRAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPDGWI--TKINRWRE--RRVLKKLGK 164 (175)
T ss_pred ecccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEeccccchh--hhhhHHHH--HHHHHHHHH
Confidence 433221 11 14555555 5788888886 4556654 46777666 466778888
Q ss_pred hcC
Q 004613 192 SYG 194 (742)
Q Consensus 192 ~~g 194 (742)
+||
T Consensus 165 k~g 167 (175)
T COG2179 165 KYG 167 (175)
T ss_pred hcC
Confidence 766
No 175
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.46 E-value=1.1e+02 Score=29.39 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhh-CCCceEEEEcccch
Q 004613 92 EDMYILLNEVKRQ-IPSVTAVSSGAIAS 118 (742)
Q Consensus 92 e~l~~~L~~vk~~-~~~i~~v~~GaI~s 118 (742)
..+.++++.++++ .+++.-++-|.+..
T Consensus 69 ~~~~~~~~~L~~~~~~~~~i~vGG~~~~ 96 (137)
T PRK02261 69 IDCRGLREKCIEAGLGDILLYVGGNLVV 96 (137)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCC
Confidence 3445555555555 34676677777753
No 176
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=42.74 E-value=80 Score=36.22 Aligned_cols=99 Identities=22% Similarity=0.229 Sum_probs=56.1
Q ss_pred eEEEEeeCchHHHHHHHHHHH--------cCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecC
Q 004613 2 KVVALVSGGKDSCYAMMKCIQ--------YGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIH 73 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~--------~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~ 73 (742)
.+.+|.|||-||.+-+--+.+ .|-.+...+-=+| || +-....+..|+-+|.+++....+
T Consensus 227 p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGle--------~S-----PDL~aarkVAd~igt~Hhe~~ft 293 (543)
T KOG0571|consen 227 PFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAIGLE--------DS-----PDLLAARKVADFIGTIHHEHTFT 293 (543)
T ss_pred ceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEecCC--------CC-----hhHHHHHHHHHHhCCcceEEEEc
Confidence 578999999999875543332 1323322221111 22 34566889999999999887654
Q ss_pred CC-ccc-------ccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcc
Q 004613 74 GS-TRH-------QKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGA 115 (742)
Q Consensus 74 g~-~~~-------~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~Ga 115 (742)
-. ... .-..|..|.=.----||-+=+++|+. ||+.|-+|-
T Consensus 294 ~qegidal~eVI~hLETYDvttIRastpmyLlsr~Ikk~--gvkmvlSGE 341 (543)
T KOG0571|consen 294 IQEGIDALDEVIYHLETYDVTTIRASTPMYLLSRKIKKL--GVKMVLSGE 341 (543)
T ss_pred HHHHHHHHHHHheeeeccccceEecCCchHHHHHHHHhc--ceEEEEecC
Confidence 11 110 01123222111112466666777776 888888775
No 177
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=42.66 E-value=4e+02 Score=27.50 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchH
Q 004613 12 DSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEV 91 (742)
Q Consensus 12 DS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~ 91 (742)
|=.-.+..+.++|.+-+.+..+--... + +....+.+...++..++|+..- |.- ...
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~---~------~~~~~~~i~~i~~~~~~~l~v~---GGi------------~~~ 88 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFE---G------ERKNAEAIEKIIEAVGVPVQLG---GGI------------RSA 88 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhc---C------CcccHHHHHHHHHHcCCcEEEc---CCc------------CCH
Confidence 545555566678877776666542211 0 1234567888888899998652 221 123
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEee------------eccc----cCHHHHHHHHHHc
Q 004613 92 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLA------------YLWK----QDQSLLLQEMITN 155 (742)
Q Consensus 92 e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~------------pLW~----~d~~~ll~em~~~ 155 (742)
|+...++. . |++.|+.|..... ...+++++.++.|-+.+. .=|. .+..++.+++.+.
T Consensus 89 ~~~~~~~~-~-----Ga~~v~iGs~~~~-~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 89 EDAASLLD-L-----GVDRVILGTAAVE-NPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL 161 (241)
T ss_pred HHHHHHHH-c-----CCCEEEEChHHhh-ChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence 45555553 1 9999999998753 234677777776532221 1233 2678999999999
Q ss_pred CCcEEEEE-EecCCCCCccccCccccchhHHHHHhhhhcCCccccCCcee
Q 004613 156 GINAITVK-VAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEY 204 (742)
Q Consensus 156 G~~a~ii~-Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGEy 204 (742)
|++.+++. +...|-. -|. + .+.+.++.+...+.+...||-.
T Consensus 162 G~~~i~~~~~~~~g~~----~g~--~--~~~i~~i~~~~~iPvia~GGI~ 203 (241)
T PRK13585 162 GAGSILFTNVDVEGLL----EGV--N--TEPVKELVDSVDIPVIASGGVT 203 (241)
T ss_pred CCCEEEEEeecCCCCc----CCC--C--HHHHHHHHHhCCCCEEEeCCCC
Confidence 99988763 3333322 132 2 3446666655566777777643
No 178
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=41.96 E-value=1.2e+02 Score=35.09 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=57.0
Q ss_pred HHHHHHHHcC-CcEEEEEEeecCCCC----CCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcc
Q 004613 15 YAMMKCIQYG-HQIVALANLMPADDS----VDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGD 89 (742)
Q Consensus 15 ~al~~~~~~G-~~vv~L~~~~p~~~~----~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~d 89 (742)
-||++|++.+ ..|+.+..+-|..-. ...--.||++++ .-+...-+.+|+||+...-.- .++
T Consensus 18 ~aL~~A~~~~~~~vlpvyv~dp~~~~~~~~~~~r~~Fl~esL--~~L~~~L~~~g~~L~v~~g~~------------~g~ 83 (472)
T PRK10674 18 LALAAACRDPSARVLALFIATPAQWAAHDMAPRQAAFINAQL--NALQIALAEKGIPLLFHEVDD------------FAA 83 (472)
T ss_pred HHHHHHHhCCCCCEEEEEEECchhhccCCCCHHHHHHHHHHH--HHHHHHHHHcCCceEEEecCC------------cCC
Confidence 4777888876 578888766553210 011112333322 224445566899998885310 012
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhc
Q 004613 90 EVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL 132 (742)
Q Consensus 90 e~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rl 132 (742)
-.+-|.+++ +++ +|+.|.+-.-..-|.+.|.++|.+.+
T Consensus 84 ~~~vl~~l~----~~~-~i~~v~~~~~~~~~~~~rd~~v~~~l 121 (472)
T PRK10674 84 SVEWLKQFC----QQH-QVTHLFYNYQYEVNERQRDAAVERAL 121 (472)
T ss_pred HHHHHHHHH----HHc-CCCEEEEecccCHHHHHHHHHHHHHc
Confidence 233333444 344 89999998877888888877765544
No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=41.35 E-value=1.6e+02 Score=26.91 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHhhCC-CceEEEEcccchhhHHHHHHHHHhhcCCeEeee
Q 004613 89 DEVEDMYILLNEVKRQIP-SVTAVSSGAIASDYQRLRVESVCSRLGLVSLAY 139 (742)
Q Consensus 89 de~e~l~~~L~~vk~~~~-~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~p 139 (742)
...+.+.++++.+|+..| ++.-++-|......- .....+|....++
T Consensus 62 ~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~-----~~~~~~G~D~~~~ 108 (119)
T cd02067 62 THMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDF-----KFLKEIGVDAYFG 108 (119)
T ss_pred ccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhH-----HHHHHcCCeEEEC
Confidence 445677777888888877 889899998887532 3567778776664
No 180
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=41.22 E-value=3.1e+02 Score=28.83 Aligned_cols=92 Identities=10% Similarity=0.110 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHcCCCeEEEecCCCcccccccc-cCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHh
Q 004613 52 GHQIIVSYAECMGLPLFRRRIHGSTRHQKLSY-RMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCS 130 (742)
Q Consensus 52 ~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y-~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~ 130 (742)
+.++++...+...+|++... | .+...-=++++ ++.+++. |+++++.-|+..+ +..++-+.|+
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~-----------y~n~~~~~G~~~f---i~~~~~a--G~~giiipDl~~e-e~~~~~~~~~ 126 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMG-----------YYNPILQYGLERF---LRDAKEA--GVDGLIIPDLPPE-EAEEFREAAK 126 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEE-----------ecCHHHHhCHHHH---HHHHHHC--CCcEEEECCCCHH-HHHHHHHHHH
Confidence 35666666666688854321 2 11000002444 4444444 9999999998765 5567788899
Q ss_pred hcCCeEeeeccccCHHHHHHHHHHcCCcEE
Q 004613 131 RLGLVSLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 131 rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
+.|++...-+=-..+.+.++..++.....+
T Consensus 127 ~~g~~~i~~i~P~T~~~~i~~i~~~~~~~v 156 (242)
T cd04724 127 EYGLDLIFLVAPTTPDERIKKIAELASGFI 156 (242)
T ss_pred HcCCcEEEEeCCCCCHHHHHHHHhhCCCCE
Confidence 999988766655556777888887444443
No 181
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=40.79 E-value=1.2e+02 Score=33.55 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEE
Q 004613 13 SCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRR 70 (742)
Q Consensus 13 S~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~ 70 (742)
|+.++-.+++.||+|++++|--++.. ++- .-... .-+...|+..|||+|.=
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~--gR~-~~l~~----spVk~~A~~~~ipv~qP 63 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPA--GRG-KKLTP----SPVKRLALELGIPVFQP 63 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCcc--CCC-CcCCC----ChHHHHHHHcCCceecc
Confidence 55666677888999999998755432 221 11112 22888999999997654
No 182
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=40.62 E-value=1.4e+02 Score=31.87 Aligned_cols=95 Identities=22% Similarity=0.273 Sum_probs=67.6
Q ss_pred HHHHHHHcCCCeEEEecCCCcccc-cccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCC
Q 004613 56 IVSYAECMGLPLFRRRIHGSTRHQ-KLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGL 134 (742)
Q Consensus 56 i~~~A~algiPl~~~~i~g~~~~~-~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl 134 (742)
+....+.+|||++....=.++... .-+| .+--.|+=.+.|+++|+++ |+..+ =|+...||-.-|-.||.=+.+
T Consensus 40 lk~~t~~lgi~~vfKsSfDKANRsSi~s~---RGpGLeeglki~~~vK~ef-gv~il--TDVHe~~q~~~vA~VvDilQi 113 (279)
T COG2877 40 LKELTEKLGIPYVFKSSFDKANRSSIHSY---RGPGLEEGLKILQEVKEEF-GVPIL--TDVHEPSQAQPVAEVVDVLQI 113 (279)
T ss_pred HHHHHhccCCceEEecccccccccccccc---cCCCHHHHHHHHHHHHHHc-CCcee--eccCChhhcchHHhhhhhhcc
Confidence 566778999999776433333222 2234 2445677788999999998 77744 499999999999999988765
Q ss_pred eEeeeccccCHHHHHHHHHHcCCcEE
Q 004613 135 VSLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 135 ~~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
- ++ ---|..||..|.+.|--.-
T Consensus 114 P--AF--LcRQTDLl~A~AkTg~~vN 135 (279)
T COG2877 114 P--AF--LCRQTDLLVAAAKTGAVVN 135 (279)
T ss_pred h--HH--HhhhHHHHHHHHHhCCeEe
Confidence 3 33 3458899999999885433
No 183
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=40.28 E-value=1.3e+02 Score=35.77 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=63.5
Q ss_pred HHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCe
Q 004613 56 IVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLV 135 (742)
Q Consensus 56 i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~ 135 (742)
..++.+.+.||++.+.++| | |+.++|..+++..+.|-.|.++.|... ++.+|.-+|+.
T Consensus 75 a~~i~~~~~iPVv~i~~s~--------~---------Dil~al~~a~~~~~~iavv~~~~~~~~-----~~~~~~~l~~~ 132 (538)
T PRK15424 75 GAYLKSRLSVPVILIKPSG--------F---------DVMQALARARKLTSSIGVVTYQETIPA-----LVAFQKTFNLR 132 (538)
T ss_pred HHHHHhhCCCCEEEecCCH--------h---------HHHHHHHHHHhcCCcEEEEecCcccHH-----HHHHHHHhCCc
Confidence 3445567899999998876 2 788999888876666667777777644 45677777776
Q ss_pred Eeeeccc--cCHHHHHHHHHHcCCcEEEEEE
Q 004613 136 SLAYLWK--QDQSLLLQEMITNGINAITVKV 164 (742)
Q Consensus 136 ~l~pLW~--~d~~~ll~em~~~G~~a~ii~V 164 (742)
.-.+-.. .|-+..+.++.+.|++++|-.+
T Consensus 133 i~~~~~~~~~e~~~~v~~lk~~G~~~vvG~~ 163 (538)
T PRK15424 133 IEQRSYVTEEDARGQINELKANGIEAVVGAG 163 (538)
T ss_pred eEEEEecCHHHHHHHHHHHHHCCCCEEEcCc
Confidence 5444433 3556889999999999999753
No 184
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=39.87 E-value=1.4e+02 Score=35.45 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=63.7
Q ss_pred HHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCe
Q 004613 56 IVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLV 135 (742)
Q Consensus 56 i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~ 135 (742)
..++.+.+.||++.+.++| | |+.++|..+++....+-.|.++.+... ++.+|.-||+.
T Consensus 65 a~~i~~~~~iPVv~i~~s~--------~---------Dil~al~~a~~~~~~ia~vg~~~~~~~-----~~~~~~ll~~~ 122 (526)
T TIGR02329 65 GAYLKSRLSLPVIVIKPTG--------F---------DVMQALARARRIASSIGVVTHQDTPPA-----LRRFQAAFNLD 122 (526)
T ss_pred HHHHHHhCCCCEEEecCCh--------h---------hHHHHHHHHHhcCCcEEEEecCcccHH-----HHHHHHHhCCc
Confidence 4556678899999998876 2 788999888776556667777777644 45677777776
Q ss_pred Eeeeccc--cCHHHHHHHHHHcCCcEEEEEE
Q 004613 136 SLAYLWK--QDQSLLLQEMITNGINAITVKV 164 (742)
Q Consensus 136 ~l~pLW~--~d~~~ll~em~~~G~~a~ii~V 164 (742)
.-.+--. .+-+..+.++.+.|++++|-.+
T Consensus 123 i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~ 153 (526)
T TIGR02329 123 IVQRSYVTEEDARSCVNDLRARGIGAVVGAG 153 (526)
T ss_pred eEEEEecCHHHHHHHHHHHHHCCCCEEECCh
Confidence 5544444 3455789999999999998753
No 185
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.55 E-value=1.8e+02 Score=27.01 Aligned_cols=47 Identities=9% Similarity=0.120 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHhhCC-CceEEEEcccchhhHHHHHHHHHhhcCCeEeeec
Q 004613 89 DEVEDMYILLNEVKRQIP-SVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYL 140 (742)
Q Consensus 89 de~e~l~~~L~~vk~~~~-~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pL 140 (742)
...+.+.++++.++++.| .+.-++-|++..+- .....++|++.+++.
T Consensus 62 ~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~-----~~~~~~~G~d~~~~~ 109 (122)
T cd02071 62 GHMTLFPEVIELLRELGAGDILVVGGGIIPPED-----YELLKEMGVAEIFGP 109 (122)
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH-----HHHHHHCCCCEEECC
Confidence 344566666667766633 55555666544211 122344566555544
No 186
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=37.46 E-value=67 Score=36.12 Aligned_cols=42 Identities=26% Similarity=0.470 Sum_probs=31.7
Q ss_pred cccceEEEEEe--ecCCCccHhHHHHHHHHHHHHHHhhCCCccccCcceeEEEeecccCc
Q 004613 668 WEDVTNLRLYF--PTSLSMPMVTLSAIFSSAFDELAVMNPRMKIDGDSIFNLVPVLGAGR 725 (742)
Q Consensus 668 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (742)
-|.=+|+=+|| |+++++..-+|. +|++|++- +|||||+|=--
T Consensus 130 ~D~RVH~cLYFI~Ptgh~l~~~DIe-----~Mk~ls~~-----------vNlIPVI~KaD 173 (373)
T COG5019 130 KDTRVHACLYFIRPTGHGLKPLDIE-----AMKRLSKR-----------VNLIPVIAKAD 173 (373)
T ss_pred ccCceEEEEEEecCCCCCCCHHHHH-----HHHHHhcc-----------cCeeeeeeccc
Confidence 45667999999 779988877764 56777654 79999997443
No 187
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=37.09 E-value=5.1e+02 Score=27.10 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchH
Q 004613 12 DSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEV 91 (742)
Q Consensus 12 DS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~ 91 (742)
|=.-.+....++|.+-..++-+--. +=+..+.++++.+++..++|+.. .|+- .-.
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~----------~g~~~n~~~i~~i~~~~~~pv~v---gGGi------------rs~ 87 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA----------FGRGSNRELLAEVVGKLDVKVEL---SGGI------------RDD 87 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc----------CCCCccHHHHHHHHHHcCCCEEE---cCCC------------CCH
Confidence 6665556666789887777776211 12556789999999999999853 3321 113
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCe--Eeeec---------ccc---CHHHHHHHHHHcCC
Q 004613 92 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLV--SLAYL---------WKQ---DQSLLLQEMITNGI 157 (742)
Q Consensus 92 e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~--~l~pL---------W~~---d~~~ll~em~~~G~ 157 (742)
|+...+|.. |++.++.|..+.+. ...+++++++.|=. ..-+. |.. +..++++++.+.|+
T Consensus 88 edv~~~l~~------Ga~kvviGs~~l~~-p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~ 160 (241)
T PRK14024 88 ESLEAALAT------GCARVNIGTAALEN-PEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGC 160 (241)
T ss_pred HHHHHHHHC------CCCEEEECchHhCC-HHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCC
Confidence 555555542 89999999887532 23445555444311 11122 432 45688999999999
Q ss_pred cEEEE-EEecCCCCCccccCccccchhHHHHHhhhhcCCccccCCc
Q 004613 158 NAITV-KVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 202 (742)
Q Consensus 158 ~a~ii-~Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 202 (742)
..+++ .+...|.. -|- + .+.+.++.+..++-+..-||
T Consensus 161 ~~iiv~~~~~~g~~----~G~--d--~~~i~~i~~~~~ipviasGG 198 (241)
T PRK14024 161 SRYVVTDVTKDGTL----TGP--N--LELLREVCARTDAPVVASGG 198 (241)
T ss_pred CEEEEEeecCCCCc----cCC--C--HHHHHHHHhhCCCCEEEeCC
Confidence 87776 45566632 253 3 45556665544455555444
No 188
>PLN02231 alanine transaminase
Probab=37.07 E-value=2.9e+02 Score=32.65 Aligned_cols=106 Identities=19% Similarity=0.309 Sum_probs=65.4
Q ss_pred EEEeeCchHHHHHHHHHHH--cCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 4 VALVSGGKDSCYAMMKCIQ--YGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 4 val~SGGKDS~~al~~~~~--~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
|++.+|+...++.+++++- .|-.|+ ...| +|. .....++.+|..++.+.+... .
T Consensus 194 I~iT~Ga~~ai~~~~~~l~~~~gd~Vl---i~~P---------~Y~-------~y~~~~~~~g~~~v~~~l~~~-----~ 249 (534)
T PLN02231 194 IFLTDGASPAVHMMMQLLIRSEKDGIL---CPIP---------QYP-------LYSASIALHGGTLVPYYLDEA-----T 249 (534)
T ss_pred EEEeCCHHHHHHHHHHHhccCCCCEEE---EeCC---------CCh-------hHHHHHHHcCCEEEEEecCcc-----c
Confidence 6688899999999998874 253321 1222 121 134556778888777765421 0
Q ss_pred cccCCCcchHHHHHHHHHHHHhhCCCceEEE-------EcccchhhHHHHHHHHHhhcCCeEe
Q 004613 82 SYRMTPGDEVEDMYILLNEVKRQIPSVTAVS-------SGAIASDYQRLRVESVCSRLGLVSL 137 (742)
Q Consensus 82 ~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~-------~GaI~s~yqr~rve~vc~rlgl~~l 137 (742)
.| +-.+++|.+++++.+.+.+.+++++ +|.+++.-++..+-++|.+.|+..+
T Consensus 250 ~~----~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI 308 (534)
T PLN02231 250 GW----GLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLL 308 (534)
T ss_pred CC----CCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 11 3346777777776655422456554 5777888777777777777666544
No 189
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=36.60 E-value=2.3e+02 Score=30.75 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEE--EEcccchhhHHHHHHHHHhhcC
Q 004613 56 IVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAV--SSGAIASDYQRLRVESVCSRLG 133 (742)
Q Consensus 56 i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v--~~GaI~s~yqr~rve~vc~rlg 133 (742)
...+|++.++|++.+..+|.. . . .+++.++.++||.|.+| ++||+. .+++.+ +. .. -+
T Consensus 124 f~~va~~~~lpi~lYn~~g~~------l------~----~~~l~~L~~~~pni~giK~s~~d~~-~~~~~~-~~-~~-~~ 183 (303)
T PRK03620 124 VEAVCKSTDLGVIVYNRDNAV------L------T----ADTLARLAERCPNLVGFKDGVGDIE-LMQRIV-RA-LG-DR 183 (303)
T ss_pred HHHHHHhCCCCEEEEcCCCCC------C------C----HHHHHHHHhhCCCEEEEEeCCCCHH-HHHHHH-HH-cC-CC
Confidence 456788999999888744311 1 1 23556666567888776 577762 222221 11 11 13
Q ss_pred CeEeeeccccC-HHHHHHHHHHcCCcEEEEEEe
Q 004613 134 LVSLAYLWKQD-QSLLLQEMITNGINAITVKVA 165 (742)
Q Consensus 134 l~~l~pLW~~d-~~~ll~em~~~G~~a~ii~Va 165 (742)
+..+. +.| .+.++-.+...|.+..|..++
T Consensus 184 f~vl~---G~d~~e~~~~~~~~~G~~G~is~~a 213 (303)
T PRK03620 184 LLYLG---GLPTAEVFAAAYLALGVPTYSSAVF 213 (303)
T ss_pred eEEEe---CCCcchhhHHHHHhCCCCEEEecHH
Confidence 43333 444 355666677789888876554
No 190
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=36.60 E-value=6.3e+02 Score=28.01 Aligned_cols=138 Identities=13% Similarity=0.116 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCcEEEEEEee---------cCCCCCCccCcccc-----cccCHHHHHHHHHHcCC-CeEEEecCCCccc
Q 004613 14 CYAMMKCIQYGHQIVALANLM---------PADDSVDELDSYMY-----QTVGHQIIVSYAECMGL-PLFRRRIHGSTRH 78 (742)
Q Consensus 14 ~~al~~~~~~G~~vv~L~~~~---------p~~~~~~~~dS~m~-----q~v~~~~i~~~A~algi-Pl~~~~i~g~~~~ 78 (742)
.-|+.+|.+.|++-|-|---+ |.-+ .+-|.|-= =....++++.+-++.|. | +...++.....
T Consensus 155 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N--~R~D~yGGslenR~rf~~eii~air~~vg~d~-v~vRis~~~~~ 231 (338)
T cd02933 155 RQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSN--KRTDEYGGSIENRARFLLEVVDAVAEAIGADR-VGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHhcCCccC--CCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc-eEEEECccccC
Confidence 346778999999998774433 4332 23344420 01235889999999987 5 55556532110
Q ss_pred ccccccCCCcchHHHHHHHHHHHHhhCCCceEEEE--cccc---hhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHH
Q 004613 79 QKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSS--GAIA---SDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMI 153 (742)
Q Consensus 79 ~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~--GaI~---s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~ 153 (742)
... ..+...|++..+++.+.+. |++.|.. |... ..|+....+.+.+.+++..+. -.+.+ .+.+++++
T Consensus 232 ~~~----~~~~~~ee~~~~~~~l~~~--g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~-~G~i~-~~~a~~~l 303 (338)
T cd02933 232 NDM----GDSDPEATFSYLAKELNKR--GLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIA-AGGYD-AESAEAAL 303 (338)
T ss_pred CCC----CCCCCHHHHHHHHHHHHHc--CCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEE-ECCCC-HHHHHHHH
Confidence 110 0133456666667776554 7777754 5443 235666677777777654333 46666 77788888
Q ss_pred HcC-CcEEEE
Q 004613 154 TNG-INAITV 162 (742)
Q Consensus 154 ~~G-~~a~ii 162 (742)
+.| .+.+-+
T Consensus 304 ~~g~~D~V~~ 313 (338)
T cd02933 304 ADGKADLVAF 313 (338)
T ss_pred HcCCCCEEEe
Confidence 876 555443
No 191
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.70 E-value=64 Score=37.65 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhc---C-CeEeeecccc--------CHHHHHHHHHHcCC
Q 004613 90 EVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRL---G-LVSLAYLWKQ--------DQSLLLQEMITNGI 157 (742)
Q Consensus 90 e~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rl---g-l~~l~pLW~~--------d~~~ll~em~~~G~ 157 (742)
..+.+.+-++.+.+++ |+..+.+.|-.-...+.|+..+|+.+ | +. .-|.- ..+++|+.|.++|+
T Consensus 223 s~e~Vv~Ei~~l~~~~-gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~---i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTH-GVGFFILADEEPTINRKKFQEFCEEIIARNPIS---VTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEecccccCHHHHHHHHHHHHhcCCCC---eEEEEecccccccCCHHHHHHHHHhCC
Confidence 4566667777776666 89888877755455677888888865 2 22 11321 14689999999999
Q ss_pred cEEEEEEecCC---CCCccccCccccc--hhHHHHHhhhhcCCcc
Q 004613 158 NAITVKVAAMG---LEPGKHLGKEIAF--LDPYLHKLKESYGINV 197 (742)
Q Consensus 158 ~a~ii~Va~~g---L~~~~~lG~~l~~--~~~~l~~l~~~~g~~~ 197 (742)
..+.+.+-+.- |+ .++|..+. ..+.+..+. ++|+.+
T Consensus 299 ~~v~iGiES~~~~~L~---~~~K~~t~~~~~~ai~~l~-~~Gi~~ 339 (497)
T TIGR02026 299 VHISLGTEAAAQATLD---HFRKGTTTSTNKEAIRLLR-QHNILS 339 (497)
T ss_pred cEEEEccccCCHHHHH---HhcCCCCHHHHHHHHHHHH-HCCCcE
Confidence 99998886532 32 45666552 334444444 467754
No 192
>PRK07206 hypothetical protein; Provisional
Probab=34.82 E-value=4.6e+02 Score=29.38 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=24.8
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEE
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALAN 32 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~ 32 (742)
||.++++.|+.-...-+..|.+.|++++.+..
T Consensus 2 ~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~ 33 (416)
T PRK07206 2 MKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTS 33 (416)
T ss_pred CCeEEEEcCCchHHHHHHHHHHcCCeEEEEEc
Confidence 78899999887766666677778999887754
No 193
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=34.78 E-value=3.8e+02 Score=28.82 Aligned_cols=128 Identities=18% Similarity=0.179 Sum_probs=66.9
Q ss_pred EEEEeeCc--hHHHHHHHHHHHcCCcEEEEEEeecCC--CCCCccCcccccccCHHHHHHHHHHc-CCCeEEEecCCCcc
Q 004613 3 VVALVSGG--KDSCYAMMKCIQYGHQIVALANLMPAD--DSVDELDSYMYQTVGHQIIVSYAECM-GLPLFRRRIHGSTR 77 (742)
Q Consensus 3 ~val~SGG--KDS~~al~~~~~~G~~vv~L~~~~p~~--~~~~~~dS~m~q~v~~~~i~~~A~al-giPl~~~~i~g~~~ 77 (742)
+++-+++. +|..-.+.++.+.|.+-+.++. |.- .+.+++ .+..+.+|++. ++|++.+.++..+
T Consensus 73 viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~--P~y~~~~~~~i---------~~~~~~v~~a~~~lpi~iYn~P~~t- 140 (288)
T cd00954 73 LIAHVGSLNLKESQELAKHAEELGYDAISAIT--PFYYKFSFEEI---------KDYYREIIAAAASLPMIIYHIPALT- 140 (288)
T ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCCCCHHHH---------HHHHHHHHHhcCCCCEEEEeCcccc-
Confidence 45555432 4555555678888966544322 211 001111 12245678999 9999999887532
Q ss_pred cccccccCCCcchHHHHHHHHHHHHhhCCCceEE--EEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHc
Q 004613 78 HQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAV--SSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITN 155 (742)
Q Consensus 78 ~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v--~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~ 155 (742)
...+. .+.+.++.+ +|.|-++ ++||+. .+++ +-.+.+= -+..+.+.|. ++-.....
T Consensus 141 --g~~l~----------~~~~~~L~~-~pnivgiK~s~~d~~-~~~~-----~~~~~~~-~~~v~~G~d~--~~~~~~~~ 198 (288)
T cd00954 141 --GVNLT----------LEQFLELFE-IPNVIGVKFTATDLY-DLER-----IRAASPE-DKLVLNGFDE--MLLSALAL 198 (288)
T ss_pred --CCCCC----------HHHHHHHhc-CCCEEEEEeCCCCHH-HHHH-----HHHhCCC-CcEEEEechH--HHHHHHHc
Confidence 11111 123444443 6888877 567753 2222 2222221 2444555543 45556678
Q ss_pred CCcEEEEEE
Q 004613 156 GINAITVKV 164 (742)
Q Consensus 156 G~~a~ii~V 164 (742)
|.+-.+..+
T Consensus 199 G~~G~i~~~ 207 (288)
T cd00954 199 GADGAIGST 207 (288)
T ss_pred CCCEEEeCh
Confidence 998877644
No 194
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.65 E-value=5.6e+02 Score=26.85 Aligned_cols=160 Identities=11% Similarity=0.142 Sum_probs=92.8
Q ss_pred EEEEeeCc---hHHHHHHHHHHHcCCcEEEE-EEeecCCCCCCccCcccccccCH--------HHHHHHHHHcCCCeEE-
Q 004613 3 VVALVSGG---KDSCYAMMKCIQYGHQIVAL-ANLMPADDSVDELDSYMYQTVGH--------QIIVSYAECMGLPLFR- 69 (742)
Q Consensus 3 ~val~SGG---KDS~~al~~~~~~G~~vv~L-~~~~p~~~~~~~~dS~m~q~v~~--------~~i~~~A~algiPl~~- 69 (742)
++.-+..| +|.+..+.+++.++ +-+| +++-.++. . .|.--.|.-.. ++++...+...+|++.
T Consensus 6 ~i~y~~~G~p~~~~~~~~~~~l~~~--ad~iElgip~sdp-~--adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM 80 (244)
T PRK13125 6 LVVYLTAGYPNVESFKEFIIGLVEL--VDILELGIPPKYP-K--YDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILM 80 (244)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhh--CCEEEECCCCCCC-C--CCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEE
Confidence 44555544 77778888888777 4444 55522221 1 12211222222 3566666667888743
Q ss_pred EecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccch--hhHHHHHHHHHhhcCCeEeeeccccCHHH
Q 004613 70 RRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIAS--DYQRLRVESVCSRLGLVSLAYLWKQDQSL 147 (742)
Q Consensus 70 ~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s--~yqr~rve~vc~rlgl~~l~pLW~~d~~~ 147 (742)
..++ +.+.+..+.++.+++. |+++|++=|+.- ..+..+.-+.|+++|+++..-+=-..+.+
T Consensus 81 ~y~n---------------~~~~~~~~~i~~~~~~--Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e 143 (244)
T PRK13125 81 TYLE---------------DYVDSLDNFLNMARDV--GADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDL 143 (244)
T ss_pred Eecc---------------hhhhCHHHHHHHHHHc--CCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 2111 1123444455555554 999999977532 34556777889999999887765555577
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCCccccCccccc-hhHHHHHhhh
Q 004613 148 LLQEMITNGINAITVKVAAMGLEPGKHLGKEIAF-LDPYLHKLKE 191 (742)
Q Consensus 148 ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~~-~~~~l~~l~~ 191 (742)
-++.+++..=..++..|... . |.++.. +.+.+.++.+
T Consensus 144 ~l~~~~~~~~~~l~msv~~~------~-g~~~~~~~~~~i~~lr~ 181 (244)
T PRK13125 144 LIHRLSKLSPLFIYYGLRPA------T-GVPLPVSVERNIKRVRN 181 (244)
T ss_pred HHHHHHHhCCCEEEEEeCCC------C-CCCchHHHHHHHHHHHH
Confidence 88888887666666666432 2 223433 3456666664
No 195
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.19 E-value=5.7e+02 Score=27.37 Aligned_cols=88 Identities=11% Similarity=0.155 Sum_probs=53.3
Q ss_pred HHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEEEEEEecCCCCCccccC
Q 004613 97 LLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLG 176 (742)
Q Consensus 97 ~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG 176 (742)
.++++++. |++|+..-|+--+ +....-+.|++.||......=-..+.+-++.+.+..-.++-. |+..|.... .
T Consensus 109 f~~~~~~a--GvdGviipDLp~e-e~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~-vs~~GvTG~---~ 181 (258)
T PRK13111 109 FAADAAEA--GVDGLIIPDLPPE-EAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYY-VSRAGVTGA---R 181 (258)
T ss_pred HHHHHHHc--CCcEEEECCCCHH-HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEE-EeCCCCCCc---c
Confidence 34455554 9999999998765 444556679999999986665556566677666554333322 444554321 1
Q ss_pred ccccc-hhHHHHHhhh
Q 004613 177 KEIAF-LDPYLHKLKE 191 (742)
Q Consensus 177 ~~l~~-~~~~l~~l~~ 191 (742)
..+.. +.+++.++.+
T Consensus 182 ~~~~~~~~~~i~~vk~ 197 (258)
T PRK13111 182 SADAADLAELVARLKA 197 (258)
T ss_pred cCCCccHHHHHHHHHh
Confidence 12222 3456666665
No 196
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.63 E-value=2.3e+02 Score=30.02 Aligned_cols=51 Identities=14% Similarity=0.362 Sum_probs=38.3
Q ss_pred cccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccc
Q 004613 47 MYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIA 117 (742)
Q Consensus 47 m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~ 117 (742)
|++.+..+++...+++.++|++-- |.- ...||+.+++++. |+++|+.|=.+
T Consensus 179 ~~~G~d~~~i~~~~~~~~ipvIas---GGv------------~s~eD~~~l~~~~-----GvdgVivg~a~ 229 (258)
T PRK01033 179 TMKGYDLELLKSFRNALKIPLIAL---GGA------------GSLDDIVEAILNL-----GADAAAAGSLF 229 (258)
T ss_pred CcCCCCHHHHHHHHhhCCCCEEEe---CCC------------CCHHHHHHHHHHC-----CCCEEEEccee
Confidence 578889999999999999999654 221 1246777776543 99999998766
No 197
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=33.35 E-value=3e+02 Score=30.36 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=60.0
Q ss_pred HHHHHHHcCCCeEEEecCCCccccccccc-----------------CCCcchHHHHHHHHHHHHhhCCCceEEEEcccch
Q 004613 56 IVSYAECMGLPLFRRRIHGSTRHQKLSYR-----------------MTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIAS 118 (742)
Q Consensus 56 i~~~A~algiPl~~~~i~g~~~~~~~~Y~-----------------~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s 118 (742)
+..+.+.+|+..+.+.-.|..+.....|. ..-+-.+..+...|++++.++ +.+-..|||.-.
T Consensus 48 v~~l~~~Lgl~~p~I~eNGA~I~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~y~~ir~~L~~l~~~~-~~~f~gF~d~t~ 126 (302)
T PRK12702 48 LEHLCRQLRLEHPFICEDGSAIYVPEHYFPAGILDEQWQHRPPYYVCALGLPYPCLRHILQQVRQDS-HLDLIGFGDWTA 126 (302)
T ss_pred HHHHHHHhCCCCeEEEeCCcEEEEccccccccccccccccCCCceEEecCCCHHHHHHHHHHHHHHh-CCCceehhhCCH
Confidence 44456778886544444555543333333 111223689999999999987 777888999753
Q ss_pred hhHHHHHHHHHhhcCCe------------EeeeccccCHHHHHHHHHHcCCcEE
Q 004613 119 DYQRLRVESVCSRLGLV------------SLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 119 ~yqr~rve~vc~rlgl~------------~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
+.+++-.||. +--.+|.-+.+.+.+.+.+.|+.++
T Consensus 127 -------~ei~~~TGL~~~~A~~A~~Re~SEp~~w~~~~~~~~~~~~~~g~~~~ 173 (302)
T PRK12702 127 -------SELAAATGIPLEEAERAQKREYSEIFSYSGDPARLREAFAQQEANLT 173 (302)
T ss_pred -------HHHHHHhCcCHHHHHHHHhccCCcceEecCCHHHHHHHHHHcCCeEE
Confidence 2333333332 2235688887777777777777664
No 198
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=32.78 E-value=4.1e+02 Score=27.83 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=35.8
Q ss_pred cccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchh
Q 004613 49 QTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASD 119 (742)
Q Consensus 49 q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~ 119 (742)
+.+..+++...++..++|++-. |.- ...+|+.++++. .|+++|+.|-.+.+
T Consensus 182 ~g~d~~~i~~~~~~~~ipvia~---GGv------------~s~~d~~~~~~~-----~G~~gvivg~al~~ 232 (253)
T PRK02083 182 NGYDLELTRAVSDAVNVPVIAS---GGA------------GNLEHFVEAFTE-----GGADAALAASIFHF 232 (253)
T ss_pred CCcCHHHHHHHHhhCCCCEEEE---CCC------------CCHHHHHHHHHh-----CCccEEeEhHHHHc
Confidence 5557888999999999998655 221 124677766544 28999999987743
No 199
>PLN02368 alanine transaminase
Probab=32.74 E-value=4e+02 Score=30.27 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=58.1
Q ss_pred EEEeeCchHHHHHHHHHHH--cCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 4 VALVSGGKDSCYAMMKCIQ--YGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 4 val~SGGKDS~~al~~~~~--~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
|++-+|++..++.++.++- .|-+| .+ .-|. |. ....+++..|..++.+.+... .
T Consensus 133 I~it~Ga~~al~~~~~~l~~~pGd~V-li--~~P~---------Y~-------~y~~~~~~~g~~~v~v~~~~~-----~ 188 (407)
T PLN02368 133 IFLTDGASKGVMQILNAVIRGEKDGV-LV--PVPQ---------YP-------LYSATISLLGGTLVPYYLEES-----E 188 (407)
T ss_pred EEEcccHHHHHHHHHHHHcCCCCCEE-EE--eCCC---------Cc-------cHHHHHHHcCCEEEEEecccc-----c
Confidence 5677888999988887764 35432 22 1221 21 134567788888877765421 1
Q ss_pred cccCCCcchHHHHHHHHHHHHhhCCCceEEE-------EcccchhhHHHHHHHHHhhcCCe
Q 004613 82 SYRMTPGDEVEDMYILLNEVKRQIPSVTAVS-------SGAIASDYQRLRVESVCSRLGLV 135 (742)
Q Consensus 82 ~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~-------~GaI~s~yqr~rve~vc~rlgl~ 135 (742)
.| +-..++|.++++..+.+.+.+++++ +|.+++.-++.++-+.|.+.|+.
T Consensus 189 ~~----~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~ 245 (407)
T PLN02368 189 NW----GLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLV 245 (407)
T ss_pred CC----CCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 12 2235667677765433222345443 46677766666665666555543
No 200
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=32.64 E-value=4.9e+02 Score=26.48 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhh-HHHHHHHHHhhc
Q 004613 54 QIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDY-QRLRVESVCSRL 132 (742)
Q Consensus 54 ~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~y-qr~rve~vc~rl 132 (742)
+.++...+..++|+.... |-. .. + . ++.+.+. |+++|..|.-...+ .-...-+.+..+
T Consensus 62 ~~~~~i~~~v~iPi~~~~-----------~i~--~~--~-~---v~~~~~~--Gad~v~l~~~~~~~~~~~~~~~~~~~~ 120 (217)
T cd00331 62 EDLRAVREAVSLPVLRKD-----------FII--DP--Y-Q---IYEARAA--GADAVLLIVAALDDEQLKELYELAREL 120 (217)
T ss_pred HHHHHHHHhcCCCEEECC-----------eec--CH--H-H---HHHHHHc--CCCEEEEeeccCCHHHHHHHHHHHHHc
Confidence 557777777899987531 100 11 1 1 3333333 99999988765442 222333446778
Q ss_pred CCeEeeeccccCHHHHHHHHHHcCCcEEEEE
Q 004613 133 GLVSLAYLWKQDQSLLLQEMITNGINAITVK 163 (742)
Q Consensus 133 gl~~l~pLW~~d~~~ll~em~~~G~~a~ii~ 163 (742)
|+....-. ...+-+++..+.|++.+.+.
T Consensus 121 g~~~~v~v---~~~~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 121 GMEVLVEV---HDEEELERALALGAKIIGIN 148 (217)
T ss_pred CCeEEEEE---CCHHHHHHHHHcCCCEEEEe
Confidence 99873332 23333677888898877654
No 201
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=32.26 E-value=53 Score=37.75 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=24.5
Q ss_pred eEEEEeeCchHHHHHHHHHHHc--CCcEEEEEEee
Q 004613 2 KVVALVSGGKDSCYAMMKCIQY--GHQIVALANLM 34 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~--G~~vv~L~~~~ 34 (742)
++.+|||||-||++-+..+-.- --+.+-|+|+.
T Consensus 252 ~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVa 286 (520)
T KOG0573|consen 252 NVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVA 286 (520)
T ss_pred cEEEEecCCchHHHHHHHHHhhcCCCCceeEEEee
Confidence 6899999999999877655432 24677887764
No 202
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=32.23 E-value=2.8e+02 Score=29.10 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeecccc------CHHHHHHHHHHcCCcEEEEEEecC
Q 004613 94 MYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQ------DQSLLLQEMITNGINAITVKVAAM 167 (742)
Q Consensus 94 l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~------d~~~ll~em~~~G~~a~ii~Va~~ 167 (742)
=.++.+.++++ ||..-++. |+|--|-.. |.+.|-.-++|..+| |..+++++|... +...
T Consensus 94 Gl~Ai~~L~~~--Gi~vn~T~-ifs~~Qa~~----Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~--------~~~~ 158 (222)
T PRK12656 94 GLAAIKTLKAE--GYHITATA-IYTVFQGLL----AIEAGADYLAPYYNRMENLNIDSNAVIGQLAEA--------IDRE 158 (222)
T ss_pred HHHHHHHHHHC--CCceEEee-eCCHHHHHH----HHHCCCCEEecccchhhhcCCCHHHHHHHHHHH--------HHhc
Confidence 46677777776 78777665 888888644 778999999999998 778888777653 2333
Q ss_pred CCCCccccCccccc
Q 004613 168 GLEPGKHLGKEIAF 181 (742)
Q Consensus 168 gL~~~~~lG~~l~~ 181 (742)
+++. +.|+-++..
T Consensus 159 ~~~t-kILaAS~r~ 171 (222)
T PRK12656 159 NSDS-KILAASFKN 171 (222)
T ss_pred CCCC-EEEEEecCC
Confidence 4443 455555554
No 203
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=31.78 E-value=70 Score=32.90 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=29.8
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEE
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALAN 32 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~ 32 (742)
||+.++=-.||=...=+-.+.+.||+|+|++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEe
Confidence 89999989999999999999999999999976
No 204
>PRK08636 aspartate aminotransferase; Provisional
Probab=31.28 E-value=4.2e+02 Score=29.60 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=61.1
Q ss_pred EEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccc
Q 004613 4 VALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSY 83 (742)
Q Consensus 4 val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y 83 (742)
+++.+|+.+.++.+++++-..-+.|.+-+ |. |. .....++.+|..++.+++.-.. .|
T Consensus 98 I~it~G~~~al~~~~~~l~~~gd~Vlv~~--P~---------y~-------~~~~~~~~~g~~~~~v~~~~~~-----~~ 154 (403)
T PRK08636 98 VVATMGSKEGYVHLVQAITNPGDVAIVPD--PA---------YP-------IHSQAFILAGGNVHKMPLEYNE-----DF 154 (403)
T ss_pred EEECCChHHHHHHHHHHhCCCCCEEEEcC--CC---------Cc-------chHHHHHhcCCEEEEEeccccc-----cC
Confidence 67889999999888887754324333321 21 21 1455688899988777653100 11
Q ss_pred cCCCcchHHHHHHHHHHHHhhC-CCceEEE-------EcccchhhHHHHHHHHHhhcCCeEe
Q 004613 84 RMTPGDEVEDMYILLNEVKRQI-PSVTAVS-------SGAIASDYQRLRVESVCSRLGLVSL 137 (742)
Q Consensus 84 ~~~~~de~e~l~~~L~~vk~~~-~~i~~v~-------~GaI~s~yqr~rve~vc~rlgl~~l 137 (742)
+-..++|.+.|++..+++ +.+.+++ +|.+++.-++.++-++|++.|+..+
T Consensus 155 ----~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 155 ----ELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred ----ccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEE
Confidence 222345555554443321 2444442 5778888777777777777665443
No 205
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=29.63 E-value=79 Score=31.61 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=24.3
Q ss_pred CeEEEEeeCchHHHHHHHHHHHc-CCc--EEEEEEe
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQY-GHQ--IVALANL 33 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~-G~~--vv~L~~~ 33 (742)
||++++.||+-....+++..+++ +++ ++.+++-
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~ 36 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITN 36 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEES
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 89999999999777777766654 576 5555543
No 206
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=29.26 E-value=1.3e+02 Score=34.39 Aligned_cols=58 Identities=29% Similarity=0.429 Sum_probs=42.9
Q ss_pred eEEEEee---CchHHHHHHHHH---HHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEe
Q 004613 2 KVVALVS---GGKDSCYAMMKC---IQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRR 71 (742)
Q Consensus 2 k~val~S---GGKDS~~al~~~---~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~ 71 (742)
|+++|+. =||--++|=+-+ +..|+.=|+|+|+ |+ |.--+++=++.||+.||+|+....
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITt----------Dt--YRIGA~EQLk~Ya~im~vp~~vv~ 267 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITT----------DT--YRIGAVEQLKTYADIMGVPLEVVY 267 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEe----------cc--chhhHHHHHHHHHHHhCCceEEec
Confidence 3445542 388888776544 3457888999997 56 466678889999999999997773
No 207
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=28.75 E-value=3.8e+02 Score=28.94 Aligned_cols=87 Identities=14% Similarity=0.228 Sum_probs=47.1
Q ss_pred HHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEE--EEcccchhhHHHHHHHHHhhcC
Q 004613 56 IVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAV--SSGAIASDYQRLRVESVCSRLG 133 (742)
Q Consensus 56 i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v--~~GaI~s~yqr~rve~vc~rlg 133 (742)
...++++.++|++.+.-+|.. . . .+++.++.+++|.|.+| ++||+.. ++ ++..+.+
T Consensus 122 f~~v~~a~~~pvilYn~~g~~------l------~----~~~~~~La~~~~nvvgiKds~~d~~~-~~-----~~~~~~~ 179 (296)
T TIGR03249 122 VEAVCESTDLGVIVYQRDNAV------L------N----ADTLERLADRCPNLVGFKDGIGDMEQ-MI-----EITQRLG 179 (296)
T ss_pred HHHHHhccCCCEEEEeCCCCC------C------C----HHHHHHHHhhCCCEEEEEeCCCCHHH-HH-----HHHHHcC
Confidence 455688899999888633311 1 1 23455555557888776 5676642 22 1222222
Q ss_pred CeEeeeccccC-HHHHHHHHHHcCCcEEEEEEe
Q 004613 134 LVSLAYLWKQD-QSLLLQEMITNGINAITVKVA 165 (742)
Q Consensus 134 l~~l~pLW~~d-~~~ll~em~~~G~~a~ii~Va 165 (742)
.-+.-|=+.+ .+.++-.++..|.+..|..++
T Consensus 180 -~~~~v~~G~~~~d~~~~~~~~~Ga~G~is~~~ 211 (296)
T TIGR03249 180 -DRLGYLGGMPTAEVTAPAYLPLGVTSYSSAIF 211 (296)
T ss_pred -CCeEEEeCCCcchhhHHHHHhCCCCEEEecHH
Confidence 1122232433 255556667779888876544
No 208
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=28.01 E-value=2.8e+02 Score=30.68 Aligned_cols=87 Identities=23% Similarity=0.432 Sum_probs=62.1
Q ss_pred ccccccCHHHHHHHHHHcCCCeEEEe--cCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCc-eEEEEcccchhhHH
Q 004613 46 YMYQTVGHQIIVSYAECMGLPLFRRR--IHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSV-TAVSSGAIASDYQR 122 (742)
Q Consensus 46 ~m~q~v~~~~i~~~A~algiPl~~~~--i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i-~~v~~GaI~s~yqr 122 (742)
+.+--.+.+-++...+-+|+.+|... +.+.. . .++-.-+|.-+|-+...+ |. +-|.+|++.|+--|
T Consensus 11 l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~------~---gGNK~RKLefll~eal~~--g~dTlvT~GgiQSNh~r 79 (323)
T COG2515 11 LIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLA------F---GGNKIRKLEFLLGEALRK--GADTLVTYGGIQSNHVR 79 (323)
T ss_pred cCCCCChhhhHHHHHHhcCeEEEEEcccccccc------c---CccHHHHHHHHHhhhhhc--CCcEEEEecccchhHHH
Confidence 44445677889999999997776553 22221 1 355666777788777765 88 67789999998554
Q ss_pred HHHHHHHhhcCCeEeeeccccC
Q 004613 123 LRVESVCSRLGLVSLAYLWKQD 144 (742)
Q Consensus 123 ~rve~vc~rlgl~~l~pLW~~d 144 (742)
. .--+++++||++...|=+..
T Consensus 80 ~-tAavA~~lGl~~v~ile~~~ 100 (323)
T COG2515 80 Q-TAAVAAKLGLKCVLILENIE 100 (323)
T ss_pred H-HHHHHHhcCCcEEEEEeccc
Confidence 3 46789999999999985554
No 209
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=28.01 E-value=2.7e+02 Score=31.21 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCC
Q 004613 329 SAGLLDDLRVVLKQIESKLVRYGF 352 (742)
Q Consensus 329 ~~~i~eQt~~il~nL~~~L~~~G~ 352 (742)
.+++.+=..++..-|+..+.-.|.
T Consensus 298 kG~v~~~i~~l~gGlrs~m~Y~Ga 321 (346)
T PRK05096 298 RGPVENTARDILGGLRSACTYVGA 321 (346)
T ss_pred CCcHHHHHHHHHHHHHHHHcccCc
Confidence 456777777777777777776664
No 210
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=27.98 E-value=6.8e+02 Score=25.72 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchH
Q 004613 12 DSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEV 91 (742)
Q Consensus 12 DS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~ 91 (742)
|-.-.+-...+.|.+=+.++.+--.. +-+.++.++++.+++..++|+..- |.- ...
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~---------~~~~~n~~~~~~i~~~~~~pv~~~---ggi------------~~~ 86 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASK---------RGREPLFELISNLAEECFMPLTVG---GGI------------RSL 86 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcc---------cCCCCCHHHHHHHHHhCCCCEEEE---CCC------------CCH
Confidence 55555556666676655555552211 125678899999999999998442 221 123
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcC------------------CeEeeeccc----cCHHHHH
Q 004613 92 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLG------------------LVSLAYLWK----QDQSLLL 149 (742)
Q Consensus 92 e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlg------------------l~~l~pLW~----~d~~~ll 149 (742)
+++.+++. . |++.|+.|.-+.+. ..+++++.++.| ......-|. .+..++.
T Consensus 87 ~d~~~~~~----~--G~~~vilg~~~l~~-~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 159 (232)
T TIGR03572 87 EDAKKLLS----L--GADKVSINTAALEN-PDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWA 159 (232)
T ss_pred HHHHHHHH----c--CCCEEEEChhHhcC-HHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHH
Confidence 45544332 1 88999999766322 134444444433 123334453 4567888
Q ss_pred HHHHHcCCcEEEEEE-ecCCCCCccccCccccchhHHHHHhhhhcCCccccCCc
Q 004613 150 QEMITNGINAITVKV-AAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 202 (742)
Q Consensus 150 ~em~~~G~~a~ii~V-a~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 202 (742)
+.+.+.|++++++.- ...|-. -| .+ .+.+.++.+..++.+..-||
T Consensus 160 ~~~~~~G~d~i~i~~i~~~g~~----~g--~~--~~~~~~i~~~~~ipvia~GG 205 (232)
T TIGR03572 160 REAEQLGAGEILLNSIDRDGTM----KG--YD--LELIKTVSDAVSIPVIALGG 205 (232)
T ss_pred HHHHHcCCCEEEEeCCCccCCc----CC--CC--HHHHHHHHhhCCCCEEEECC
Confidence 999999999888753 222211 12 22 45666666555566666665
No 211
>PLN02309 5'-adenylylsulfate reductase
Probab=27.02 E-value=1.6e+02 Score=34.34 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=31.0
Q ss_pred eEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEE
Q 004613 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRR 70 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~ 70 (742)
++++.+|||||+.+--+ +.+.+-++- ++.+ + + -|.|... .+..+..++-+|+++...
T Consensus 112 ~ia~~~SG~ed~vll~l-~~~~~~~ip-V~fl---D--T----G~lfpET-y~~~d~v~~~ygl~i~~~ 168 (457)
T PLN02309 112 DIAIAFSGAEDVALIEY-AHLTGRPFR-VFSL---D--T----GRLNPET-YRLFDAVEKHYGIRIEYM 168 (457)
T ss_pred CEEEEecchHHHHHHHH-HHHhCCCCc-EEEe---c--C----CCCCHHH-HHHHHHHHHHhCCceEEE
Confidence 46788999999964432 333343322 2222 1 0 1111111 345778888899998765
No 212
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=26.07 E-value=65 Score=27.96 Aligned_cols=44 Identities=30% Similarity=0.495 Sum_probs=31.7
Q ss_pred CceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCc
Q 004613 107 SVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIN 158 (742)
Q Consensus 107 ~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~ 158 (742)
+.+.+-+|+|+..| +.+|+..|.+++.+ +--.+++.++-..|+=
T Consensus 12 ~~~~~~~~~vy~~Y-----~~lc~~~~~~pls~---~r~~~~l~eL~~~gli 55 (85)
T PF09079_consen 12 GKEEVTTGEVYEVY-----EELCESLGVDPLSY---RRFSDYLSELEMLGLI 55 (85)
T ss_dssp TSSSEEHHHHHHHH-----HHHHHHTTS----H---HHHHHHHHHHHHTTSE
T ss_pred CCCceeHHHHHHHH-----HHHHHHcCCCCCCH---HHHHHHHHHHHhCCCe
Confidence 45778999999888 47899999988875 4455788999888863
No 213
>PRK08361 aspartate aminotransferase; Provisional
Probab=26.03 E-value=3.6e+02 Score=29.89 Aligned_cols=96 Identities=13% Similarity=0.291 Sum_probs=50.8
Q ss_pred EEEeeCchHHHHHHHHHH-HcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccccc
Q 004613 4 VALVSGGKDSCYAMMKCI-QYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLS 82 (742)
Q Consensus 4 val~SGGKDS~~al~~~~-~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~ 82 (742)
+++.+||..+++.+++++ +.|-.|+ + .-|. | .. ....++..|+.++..++.... .
T Consensus 96 i~~t~G~~~al~~~~~~l~~~g~~Vl-v--~~p~---------y--~~-----~~~~~~~~g~~~~~v~~~~~~-----~ 151 (391)
T PRK08361 96 VIVTAGAYEATYLAFESLLEEGDEVI-I--PDPA---------F--VC-----YVEDAKIAEAKPIRIPLREEN-----E 151 (391)
T ss_pred EEEeCChHHHHHHHHHHhcCCCCEEE-E--cCCC---------C--cc-----cHHHHHHcCCEEEEEecCCcc-----C
Confidence 567889999988877666 3453322 1 1121 1 11 234677789988877664210 1
Q ss_pred ccCCCcchHHHHHHHHHHHHhhCCCceEEE-------EcccchhhHHHHHHHHHhhcC
Q 004613 83 YRMTPGDEVEDMYILLNEVKRQIPSVTAVS-------SGAIASDYQRLRVESVCSRLG 133 (742)
Q Consensus 83 Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~-------~GaI~s~yqr~rve~vc~rlg 133 (742)
| .-..+++.++++ . ++..|+ +|.+++..++..+-++|.+.|
T Consensus 152 ~----~~d~~~l~~~i~---~---~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~ 199 (391)
T PRK08361 152 F----QPDPDELLELIT---K---RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYN 199 (391)
T ss_pred C----CCCHHHHHHhcc---c---ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcC
Confidence 1 122344444432 1 345555 466666555555555555544
No 214
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=26.02 E-value=4.6e+02 Score=30.81 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCcEEEEEEecCC--CCCc-cccCccccchhHHHHHhhhhcCCccccCCc
Q 004613 147 LLLQEMITNGINAITVKVAAMG--LEPG-KHLGKEIAFLDPYLHKLKESYGINVCGEGG 202 (742)
Q Consensus 147 ~ll~em~~~G~~a~ii~Va~~g--L~~~-~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 202 (742)
+-.++++++|.+++.+.+...+ .... ..+|..--.....+.+..+++|+.+.-+||
T Consensus 294 ~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGG 352 (495)
T PTZ00314 294 DQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGG 352 (495)
T ss_pred HHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCC
Confidence 3356788999999887654322 1110 012322111123344555567776666666
No 215
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.99 E-value=2.7e+02 Score=30.02 Aligned_cols=150 Identities=16% Similarity=0.177 Sum_probs=80.6
Q ss_pred EEEEeeCchHHHHH--HHHHHHcC-CcEEEEEEee-cCCCCCCccCccccccc--CHHHHHHHHHHcCCCeEEEecCCCc
Q 004613 3 VVALVSGGKDSCYA--MMKCIQYG-HQIVALANLM-PADDSVDELDSYMYQTV--GHQIIVSYAECMGLPLFRRRIHGST 76 (742)
Q Consensus 3 ~val~SGGKDS~~a--l~~~~~~G-~~vv~L~~~~-p~~~~~~~~dS~m~q~v--~~~~i~~~A~algiPl~~~~i~g~~ 76 (742)
+++.+.|-...-|+ +.++.+.| .+.+- +|+. |... .+ ...+.|.+ -.++++...++.++|+... ++.
T Consensus 94 ~i~si~g~~~~~~~~~a~~~~~aG~~D~iE-lN~~cP~~~-~g--g~~~~~~~~~~~eiv~~vr~~~~~pv~vK-l~~-- 166 (301)
T PRK07259 94 IIANVAGSTEEEYAEVAEKLSKAPNVDAIE-LNISCPNVK-HG--GMAFGTDPELAYEVVKAVKEVVKVPVIVK-LTP-- 166 (301)
T ss_pred EEEEeccCCHHHHHHHHHHHhccCCcCEEE-EECCCCCCC-CC--ccccccCHHHHHHHHHHHHHhcCCCEEEE-cCC--
Confidence 56777665433333 33455556 66444 4443 3221 10 01122222 2466777777789998755 321
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEE-----c---ccc-------------h-----hhHHHHHHHHHh
Q 004613 77 RHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSS-----G---AIA-------------S-----DYQRLRVESVCS 130 (742)
Q Consensus 77 ~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~-----G---aI~-------------s-----~yqr~rve~vc~ 130 (742)
..++..++.+.|. +. |+++|+. | |+. | .+...++..+.+
T Consensus 167 ----------~~~~~~~~a~~l~---~~--G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~ 231 (301)
T PRK07259 167 ----------NVTDIVEIAKAAE---EA--GADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQ 231 (301)
T ss_pred ----------CchhHHHHHHHHH---Hc--CCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHH
Confidence 1123334444333 33 7887753 2 111 0 112356677777
Q ss_pred hcCCeEeeeccccCHHHHHHHHHHcCCcEEEEEEecCCCCCccccCc
Q 004613 131 RLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGK 177 (742)
Q Consensus 131 rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~ 177 (742)
.+++ ++.-.-+....+-..+|+..|.+++-+.-+... +| .+..+
T Consensus 232 ~~~i-pvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-~P-~~~~~ 275 (301)
T PRK07259 232 AVDI-PIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-DP-YAFPK 275 (301)
T ss_pred hCCC-CEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-Cc-HHHHH
Confidence 7764 445566667777888888999888877666555 66 24443
No 216
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=25.87 E-value=1.4e+02 Score=32.24 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=41.3
Q ss_pred cchhhhHHHHHHHHHHHhhhc-C----CCcccceEEEEEe--ecCCCccHhHHHHHHHHHHHHHHhhCCCccccCcceeE
Q 004613 644 GGMGRLSRFCIYLLNKIIVEN-N----FSWEDVTNLRLYF--PTSLSMPMVTLSAIFSSAFDELAVMNPRMKIDGDSIFN 716 (742)
Q Consensus 644 ~~~~~~~~~~~~l~~~~~~~~-~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (742)
..++.|..+++-..++.+.+. + -.-|.-+|+=+|| |+++++...+|. +|++|++. .|
T Consensus 81 ~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-----~mk~Ls~~-----------vN 144 (281)
T PF00735_consen 81 DCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-----FMKRLSKR-----------VN 144 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-----HHHHHTTT-----------SE
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-----HHHHhccc-----------cc
Confidence 345566666665566555433 1 2356778999999 556778777764 56777655 69
Q ss_pred EEeecccCcc
Q 004613 717 LVPVLGAGRS 726 (742)
Q Consensus 717 ~~~~~~~~~~ 726 (742)
+|||++=+-+
T Consensus 145 vIPvIaKaD~ 154 (281)
T PF00735_consen 145 VIPVIAKADT 154 (281)
T ss_dssp EEEEESTGGG
T ss_pred EEeEEecccc
Confidence 9999987654
No 217
>PRK05764 aspartate aminotransferase; Provisional
Probab=25.63 E-value=3.5e+02 Score=29.89 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=52.9
Q ss_pred EEEeeCchHHHHHHHHHH-HcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccccc
Q 004613 4 VALVSGGKDSCYAMMKCI-QYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLS 82 (742)
Q Consensus 4 val~SGGKDS~~al~~~~-~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~ 82 (742)
+++.+||..+++.++.+. +.|-. |.+ .-|. |. ....+++..|+++...+.... ..
T Consensus 94 i~~~~g~~~a~~~~~~~~~~~gd~-vl~--~~p~-----------y~-----~~~~~~~~~g~~~~~~~~~~~-----~~ 149 (393)
T PRK05764 94 VIVTTGAKQALYNAFMALLDPGDE-VII--PAPY-----------WV-----SYPEMVKLAGGVPVFVPTGEE-----NG 149 (393)
T ss_pred EEEeCCcHHHHHHHHHHhcCCCCE-EEe--cCCC-----------Cc-----chHHHHHHcCCEEEEEecCcc-----cC
Confidence 567889999988887764 44532 222 1121 11 134457788998877765311 01
Q ss_pred ccCCCcchHHHHHHHHHHHHhhCCCceEEE-------EcccchhhHHHHHHHHHhhcCC
Q 004613 83 YRMTPGDEVEDMYILLNEVKRQIPSVTAVS-------SGAIASDYQRLRVESVCSRLGL 134 (742)
Q Consensus 83 Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~-------~GaI~s~yqr~rve~vc~rlgl 134 (742)
| .-..+++.++++ ++++.|+ +|.+++.-.+.++-++|.+.|+
T Consensus 150 ~----~~d~~~l~~~l~------~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~ 198 (393)
T PRK05764 150 F----KLTVEQLEAAIT------PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDI 198 (393)
T ss_pred C----cCCHHHHHHhhC------ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCc
Confidence 1 112345554442 2566666 6777766555555555555443
No 218
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=24.89 E-value=82 Score=34.52 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=28.7
Q ss_pred CeEEEEeeC--chHHHHHHHHHHHcCCcEEEEEE
Q 004613 1 MKVVALVSG--GKDSCYAMMKCIQYGHQIVALAN 32 (742)
Q Consensus 1 Mk~val~SG--GKDS~~al~~~~~~G~~vv~L~~ 32 (742)
|.-+||++| |-|+.|=.-+++++||+|.++..
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~R 34 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKR 34 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEee
Confidence 556789998 99999999999999999999865
No 219
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.41 E-value=7.6e+02 Score=31.94 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=72.5
Q ss_pred HHHHHH-HHHHcCCcEEEEEEeecCCCC--CCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcc
Q 004613 13 SCYAMM-KCIQYGHQIVALANLMPADDS--VDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGD 89 (742)
Q Consensus 13 S~~al~-~~~~~G~~vv~L~~~~p~~~~--~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~d 89 (742)
+++.+. .+.+.||+++ +++.-|...+ .+..|.+-|...-.+.+..+++.-++-.+.....|.
T Consensus 577 ~~v~~~~aLk~~G~~vI-~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~-------------- 641 (1068)
T PRK12815 577 SSVHAAFALKKEGYETI-MINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQ-------------- 641 (1068)
T ss_pred hHHHHHHHHHHcCCEEE-EEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcH--------------
Confidence 444444 4456799977 5565554321 122344334444456666666666665544432221
Q ss_pred hHHHHHHHHHHHHhhCCCceEEEE--cccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEEEEEEec
Q 004613 90 EVEDMYILLNEVKRQIPSVTAVSS--GAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAA 166 (742)
Q Consensus 90 e~e~l~~~L~~vk~~~~~i~~v~~--GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ii~Va~ 166 (742)
....+...|.+ . |+..+.+ -+|..--.|.+..+.|.++|+..-.+.--.+.+++++-.-+.||.++|--+..
T Consensus 642 ~~~~la~~le~----~-Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~~igyPvVVKP~~~ 715 (1068)
T PRK12815 642 TAINLAKGLEE----A-GLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIGYPVLIRPSYV 715 (1068)
T ss_pred HHHHHHHHHHH----C-CCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHhcCCCEEEEeCCC
Confidence 11223333322 2 5543222 22334456778889999999976555444566777766667899887665443
No 220
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=23.99 E-value=8.2e+02 Score=25.31 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=76.2
Q ss_pred EEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCC--eEEEecCC-----Ccc
Q 004613 5 ALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLP--LFRRRIHG-----STR 77 (742)
Q Consensus 5 al~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiP--l~~~~i~g-----~~~ 77 (742)
+..+||--|.=.+..+++.|-+-+.+.+....+ .+++...++.++-- .+....+. ..+
T Consensus 74 v~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~---------------p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v 138 (243)
T cd04731 74 LTVGGGIRSLEDARRLLRAGADKVSINSAAVEN---------------PELIREIAKRFGSQCVVVSIDAKRRGDGGYEV 138 (243)
T ss_pred EEEeCCCCCHHHHHHHHHcCCceEEECchhhhC---------------hHHHHHHHHHcCCCCEEEEEEeeecCCCceEE
Confidence 567899888888888888887666554433221 23355555555421 11111110 001
Q ss_pred cccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccch-----hhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHH
Q 004613 78 HQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIAS-----DYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEM 152 (742)
Q Consensus 78 ~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s-----~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em 152 (742)
.....+..+ ..+..++ .+.+.+. |++.++..++.. -|+...++.+++.+++. +..-.+....+=+.++
T Consensus 139 ~~~~~~~~~-~~~~~~~---~~~l~~~--G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~p-via~GGi~~~~di~~~ 211 (243)
T cd04731 139 YTHGGRKPT-GLDAVEW---AKEVEEL--GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIP-VIASGGAGKPEHFVEA 211 (243)
T ss_pred EEcCCceec-CCCHHHH---HHHHHHC--CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCC-EEEeCCCCCHHHHHHH
Confidence 111111111 2222233 3333333 899998888763 35567778888777644 4445555555556677
Q ss_pred HHc-CCcEEEEEEe
Q 004613 153 ITN-GINAITVKVA 165 (742)
Q Consensus 153 ~~~-G~~a~ii~Va 165 (742)
++. |++.+++.-+
T Consensus 212 l~~~g~dgv~vg~a 225 (243)
T cd04731 212 FEEGGADAALAASI 225 (243)
T ss_pred HHhCCCCEEEEeHH
Confidence 775 8998888554
No 221
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=23.91 E-value=9.9e+02 Score=26.26 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=66.1
Q ss_pred HHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCH---HHHHHHHHHcCC-CeEEEecCCCcccccccccCCCcchHH
Q 004613 17 MMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGH---QIIVSYAECMGL-PLFRRRIHGSTRHQKLSYRMTPGDEVE 92 (742)
Q Consensus 17 l~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~---~~i~~~A~algi-Pl~~~~i~g~~~~~~~~Y~~~~~de~e 92 (742)
+-.|.++|++=+.++-|+|.. |. =|.|+ ++-+.+++.-.. |-++. +.+ |. ...+.++
T Consensus 110 l~~l~~~G~~~iv~lPL~Pqy-------S~--~t~gs~~~~~~~~l~~~~~~~~~~~~-i~~--------~~-~~p~yi~ 170 (322)
T TIGR00109 110 VKELLKDGVERAVVLPLYPHF-------SS--STTGSSFNELAEALKKLRSLRPTISV-IES--------WY-DNPKYIK 170 (322)
T ss_pred HHHHHhcCCCeEEEEeCCccc-------cc--ccHHHHHHHHHHHHHhcccCCCeEEE-eCc--------cc-cCcHHHH
Confidence 345667899888889999864 22 23333 222333333333 33333 332 21 2455667
Q ss_pred HHHHHHHHHHhhCCCce--EEEE------------cccchhhHHHHHHHHHhhcCC---eEeeec-------ccc-CHHH
Q 004613 93 DMYILLNEVKRQIPSVT--AVSS------------GAIASDYQRLRVESVCSRLGL---VSLAYL-------WKQ-DQSL 147 (742)
Q Consensus 93 ~l~~~L~~vk~~~~~i~--~v~~------------GaI~s~yqr~rve~vc~rlgl---~~l~pL-------W~~-d~~~ 147 (742)
.+.+.+++..++++.-+ .+++ ||-+-..-..=.+.+++++|. ..++|. |-. +-++
T Consensus 171 a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~~~Gd~Y~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~~Wl~P~~~~ 250 (322)
T TIGR00109 171 ALADSIKETLASFPEPDNAVLLFSAHGLPQSYVDEGDPYPAECEATTRLIAEKLGFPNEYRLTWQSRVGPEPWLGPYTEE 250 (322)
T ss_pred HHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHhhCCCChHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcCCCCHHH
Confidence 77777766544443223 5665 555433223345667777772 122221 211 3457
Q ss_pred HHHHHHHcCCcEEEE
Q 004613 148 LLQEMITNGINAITV 162 (742)
Q Consensus 148 ll~em~~~G~~a~ii 162 (742)
.|+++.+.|.+-+++
T Consensus 251 ~l~~l~~~G~k~V~v 265 (322)
T TIGR00109 251 LLEKLGEQGVQHIVV 265 (322)
T ss_pred HHHHHHHcCCceEEE
Confidence 777888888765554
No 222
>PRK04302 triosephosphate isomerase; Provisional
Probab=23.87 E-value=6.1e+02 Score=26.12 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchH-HHHHHHHHHHHhhCCCceEEEEccc---chhhHHHHHHH
Q 004613 52 GHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEV-EDMYILLNEVKRQIPSVTAVSSGAI---ASDYQRLRVES 127 (742)
Q Consensus 52 ~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~-e~l~~~L~~vk~~~~~i~~v~~GaI---~s~yqr~rve~ 127 (742)
+...+...++..++|++-+.+.... .+-.+ |...+.|+++ |+++|..||- +..-...+.-.
T Consensus 44 ~~~~l~~v~~~~~i~v~aq~~~~~~----------~G~~tg~~~~~~l~~~-----G~~~vii~~ser~~~~~e~~~~v~ 108 (223)
T PRK04302 44 QALDIRRVAEEVDIPVYAQHVDPVE----------PGSHTGHILPEAVKDA-----GAVGTLINHSERRLTLADIEAVVE 108 (223)
T ss_pred CHHHHHHHHHhcCCeEEeccCCCCC----------CCCchhhhHHHHHHHc-----CCCEEEEeccccccCHHHHHHHHH
Confidence 3444677777789999876543210 11111 2233444443 9999999983 22112333444
Q ss_pred HHhhcCCeEeeeccccCHHHHHHHHHHcCCc
Q 004613 128 VCSRLGLVSLAYLWKQDQSLLLQEMITNGIN 158 (742)
Q Consensus 128 vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~ 158 (742)
.|.++||.++. --...+-++...+.|.+
T Consensus 109 ~a~~~Gl~~I~---~v~~~~~~~~~~~~~~~ 136 (223)
T PRK04302 109 RAKKLGLESVV---CVNNPETSAAAAALGPD 136 (223)
T ss_pred HHHHCCCeEEE---EcCCHHHHHHHhcCCCC
Confidence 57888998772 33334444455555544
No 223
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=23.69 E-value=5.6e+02 Score=27.52 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=84.2
Q ss_pred EEEEeeCch-HHHHHHHHHHHc-CCcEEEE-EEeecCCCCCCccCccccccc--CHHHHHHHHHHcCCCeEEEecCCCcc
Q 004613 3 VVALVSGGK-DSCYAMMKCIQY-GHQIVAL-ANLMPADDSVDELDSYMYQTV--GHQIIVSYAECMGLPLFRRRIHGSTR 77 (742)
Q Consensus 3 ~val~SGGK-DS~~al~~~~~~-G~~vv~L-~~~~p~~~~~~~~dS~m~q~v--~~~~i~~~A~algiPl~~~~i~g~~~ 77 (742)
+++.+.|.. |-...+.+.+++ |.-..++ +|+.-+..+ ..-++++ +.+ -.++++..-++.++|+... ++.
T Consensus 93 l~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~-~~g~~l~-~~~~~~~eiv~~vr~~~~~pv~vK-i~~--- 166 (300)
T TIGR01037 93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK-GGGIAIG-QDPELSADVVKAVKDKTDVPVFAK-LSP--- 166 (300)
T ss_pred EEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC-CCccccc-cCHHHHHHHHHHHHHhcCCCEEEE-CCC---
Confidence 455665543 333333344432 2112333 666544321 1223333 322 2467777778889998655 331
Q ss_pred cccccccCCCcchHHHHHHHHHHHHhhCCCceEEEE-----c---ccc-------------h-----hhHHHHHHHHHhh
Q 004613 78 HQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSS-----G---AIA-------------S-----DYQRLRVESVCSR 131 (742)
Q Consensus 78 ~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~-----G---aI~-------------s-----~yqr~rve~vc~r 131 (742)
..++..++.+.|.+ . |+++++. | |+. + .....++..+.+.
T Consensus 167 ---------~~~~~~~~a~~l~~---~--G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~ 232 (300)
T TIGR01037 167 ---------NVTDITEIAKAAEE---A--GADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKM 232 (300)
T ss_pred ---------ChhhHHHHHHHHHH---c--CCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhc
Confidence 11233444444433 2 8998874 2 111 0 0012455666676
Q ss_pred cCCeEeeeccccCHHHHHHHHHHcCCcEEEEEEecCCCCCccccCccccchhHHHHHhhhhcCC
Q 004613 132 LGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGI 195 (742)
Q Consensus 132 lgl~~l~pLW~~d~~~ll~em~~~G~~a~ii~Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~ 195 (742)
+++ ++.--.+....+-..+|++.|.+++-+.-+... +| ++=+. +.+.|.++.++.|+
T Consensus 233 ~~i-pvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~-~p--~~~~~---i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 233 VDI-PIIGVGGITSFEDALEFLMAGASAVQVGTAVYY-RG--FAFKK---IIEGLIAFLKAEGF 289 (300)
T ss_pred CCC-CEEEECCCCCHHHHHHHHHcCCCceeecHHHhc-Cc--hHHHH---HHHHHHHHHHHcCC
Confidence 764 444456666777788888999888777654433 33 22222 33445555555554
No 224
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=23.49 E-value=2.1e+02 Score=33.28 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCcEEEEEEeecCCCCC---CccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcchH
Q 004613 15 YAMMKCIQYGHQIVALANLMPADDSV---DELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEV 91 (742)
Q Consensus 15 ~al~~~~~~G~~vv~L~~~~p~~~~~---~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~ 91 (742)
.||.+|.+.|-.|+.++.+..++.-. ..--.||.|++. -+..-=..+|+||+... +|-.
T Consensus 18 ~aL~~A~~~~~~~~~~vfi~~~~~~~~~~~~~~~Fl~~sL~--~L~~~L~~~gi~L~v~~----------------~~~~ 79 (461)
T COG0415 18 AALAAACQSGQPVIIAVFILDPEQLGHASPRHAAFLLQSLQ--ALQQSLAELGIPLLVRE----------------GDPE 79 (461)
T ss_pred HHHHHHHhcCCCceEEEEEechhhccccCHHHHHHHHHHHH--HHHHHHHHcCCceEEEe----------------CCHH
Confidence 47888999998876555555443210 000123333221 12222345799999884 3333
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcccchhhHHHHH
Q 004613 92 EDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRV 125 (742)
Q Consensus 92 e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rv 125 (742)
+.+.++++++ ++++|....-...+-+.|-
T Consensus 80 ~~l~~~~~~~-----~~~~v~~n~~~~~~~~~rD 108 (461)
T COG0415 80 QVLPELAKQL-----AATTVFWNRDYEEWERQRD 108 (461)
T ss_pred HHHHHHHHHh-----CcceEEeeeeechhHHHHH
Confidence 4444455444 6888888877766666653
No 225
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=23.45 E-value=1.3e+02 Score=33.37 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=38.9
Q ss_pred eEEEEeeCchHHHHHHHHHHH----cCCcEE-EEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEe
Q 004613 2 KVVALVSGGKDSCYAMMKCIQ----YGHQIV-ALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRR 71 (742)
Q Consensus 2 k~val~SGGKDS~~al~~~~~----~G~~vv-~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~ 71 (742)
++..--||||||+.+.+-... ++|.+. .|+... ++ ++- |-..-.+.+.......||||-...
T Consensus 53 ~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~d-eg-----i~g--yrd~sl~avkrn~~~~~lPL~ivs 119 (347)
T KOG2840|consen 53 RVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSID-EG-----IRG--YRDDSLEAVKRNGVQYGLPLCIVS 119 (347)
T ss_pred ccccccccchhHHHHHHHHHHhhhhcCCCceeeeeecc-cc-----ccc--eeccHHHHHHHhhhhcCCceEEec
Confidence 355667999999999985443 223332 222221 11 222 444556778889999999997764
No 226
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.33 E-value=8.7e+02 Score=25.39 Aligned_cols=152 Identities=11% Similarity=0.112 Sum_probs=85.1
Q ss_pred HHHHHHHHHHH-cCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccccccCCCcch
Q 004613 12 DSCYAMMKCIQ-YGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDE 90 (742)
Q Consensus 12 DS~~al~~~~~-~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de 90 (742)
|..-.+....+ +|-+-..++-+--.. .=|..+.++++.+++..++|+. +.|+- .-
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~---------~~~~~n~~~I~~i~~~~~~pi~---vGGGI------------rs 87 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAK---------AQHAREFDYIKSLRRLTTKDIE---VGGGI------------RT 87 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccc---------cCCcchHHHHHHHHhhcCCeEE---EcCCc------------CC
Confidence 44333333444 577777777762221 1255678899999999999953 33321 11
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcC------C-----eEeeecccc----CHHHHHHHHHHc
Q 004613 91 VEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLG------L-----VSLAYLWKQ----DQSLLLQEMITN 155 (742)
Q Consensus 91 ~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlg------l-----~~l~pLW~~----d~~~ll~em~~~ 155 (742)
.|+..++|.. |++.|+.|=...+. -..+++++++.| + +....=|.. +..++++++.+.
T Consensus 88 ~e~v~~~l~~------Ga~kvvigt~a~~~-~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~ 160 (234)
T PRK13587 88 KSQIMDYFAA------GINYCIVGTKGIQD-TDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDI 160 (234)
T ss_pred HHHHHHHHHC------CCCEEEECchHhcC-HHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHc
Confidence 3444444431 77777777655322 234455555542 1 233445654 458999999999
Q ss_pred CCcE-EEEEEecCCCCCccccCccccchhHHHHHhhhhcCCccccCCc
Q 004613 156 GINA-ITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGG 202 (742)
Q Consensus 156 G~~a-~ii~Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgG 202 (742)
|+.. ++..++..|... |-.++ .+.++.+..++.+.-+||
T Consensus 161 g~~~ii~tdi~~dGt~~----G~~~~----li~~l~~~~~ipvi~~GG 200 (234)
T PRK13587 161 PLGGIIYTDIAKDGKMS----GPNFE----LTGQLVKATTIPVIASGG 200 (234)
T ss_pred CCCEEEEecccCcCCCC----ccCHH----HHHHHHHhCCCCEEEeCC
Confidence 9765 445677777542 54443 344444444555555555
No 227
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=22.78 E-value=5.5e+02 Score=28.10 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHcCC
Q 004613 470 TVELEQALQNSEAVAKCFNC 489 (742)
Q Consensus 470 ~~Qa~~aLqnl~~VL~aaG~ 489 (742)
.++.+++++.+..+++..|+
T Consensus 377 ~~~i~~~l~~L~~~~~~~~~ 396 (397)
T PRK06939 377 KEQLDRAIDAFEKVGKELGV 396 (397)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 46788888888888888764
No 228
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=22.72 E-value=71 Score=27.53 Aligned_cols=44 Identities=23% Similarity=0.408 Sum_probs=33.0
Q ss_pred CceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCc
Q 004613 107 SVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIN 158 (742)
Q Consensus 107 ~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~ 158 (742)
+-+.+.+|+|+..|+ ++|++.|+.++.+ +--.+++.++-..|+=
T Consensus 19 ~~~~~~~~~vy~~Y~-----~~c~~~~~~~l~~---~~~~~~l~~L~~~gli 62 (87)
T cd08768 19 GEEEATTGEVYEVYE-----ELCEEIGVDPLTQ---RRISDLLSELEMLGLL 62 (87)
T ss_pred CCCCccHHHHHHHHH-----HHHHHcCCCCCcH---HHHHHHHHHHHHcCCe
Confidence 456688999998884 7799988776553 4455788888888764
No 229
>PTZ00377 alanine aminotransferase; Provisional
Probab=22.56 E-value=6.4e+02 Score=29.04 Aligned_cols=106 Identities=12% Similarity=0.194 Sum_probs=62.2
Q ss_pred EEEeeCchHHHHHHHHHHH--cCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCcccccc
Q 004613 4 VALVSGGKDSCYAMMKCIQ--YGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKL 81 (742)
Q Consensus 4 val~SGGKDS~~al~~~~~--~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~ 81 (742)
|++-+|++..++.+++++- .|-+ |.+ ..| .| ......++..|...+.+++... .
T Consensus 141 I~it~Ga~~al~~~~~~l~~~~gD~-Vlv--~~P---------~y-------~~y~~~~~~~g~~~v~v~~~~~-----~ 196 (481)
T PTZ00377 141 IFLTDGASSGIKLLLQLLIGDPSDG-VMI--PIP---------QY-------PLYSAAITLLGGKQVPYYLDEE-----K 196 (481)
T ss_pred EEEcCCHHHHHHHHHHHhccCCCCE-EEE--CCC---------Cc-------hhHHHHHHHcCCEEEEEEeccc-----c
Confidence 6688899999999988774 3533 222 112 12 1245567788887777765321 0
Q ss_pred cccCCCcchHHHHHHHHHHHHhhCCCceEEE-------EcccchhhHHHHHHHHHhhcCCeEe
Q 004613 82 SYRMTPGDEVEDMYILLNEVKRQIPSVTAVS-------SGAIASDYQRLRVESVCSRLGLVSL 137 (742)
Q Consensus 82 ~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~-------~GaI~s~yqr~rve~vc~rlgl~~l 137 (742)
.| +-..++|.+++...+++.+.+++++ +|.+++.-++.++-++|.+-|+..+
T Consensus 197 ~~----~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI 255 (481)
T PTZ00377 197 GW----SLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLM 255 (481)
T ss_pred CC----CCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEE
Confidence 11 1234666666665433322355543 6777887777777777777666443
No 230
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=22.55 E-value=5.9e+02 Score=28.26 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=29.3
Q ss_pred EEEeeCchHHHHHHHHHHH-cCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEec
Q 004613 4 VALVSGGKDSCYAMMKCIQ-YGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRI 72 (742)
Q Consensus 4 val~SGGKDS~~al~~~~~-~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i 72 (742)
|++.+||...++.+++++- .|-+|+.. -| .|. . ....++..|+.+...+.
T Consensus 94 i~it~G~~~al~~~~~~~~~~gd~vl~~---~p---------~y~--~-----~~~~~~~~g~~~~~~~~ 144 (391)
T PRK07309 94 ILVTIGATEALSASLTAILEPGDKVLLP---AP---------AYP--G-----YEPIVNLVGAEIVEIDT 144 (391)
T ss_pred EEEeCChHHHHHHHHHHhcCCCCEEEEe---CC---------CCc--c-----hHHHHHHcCCEEEEEec
Confidence 6678899999988877653 34332221 12 111 1 23356778988766654
No 231
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=22.09 E-value=7.3e+02 Score=27.97 Aligned_cols=101 Identities=20% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCeEEEecC-CCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhh
Q 004613 53 HQIIVSYAECMGLPLFRRRIH-GSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSR 131 (742)
Q Consensus 53 ~~~i~~~A~algiPl~~~~i~-g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~r 131 (742)
.+.+++..++ |+-++.+.+. |.+ +...+.++++|++||.+.-+ .|-+..-.+
T Consensus 110 ~er~~~L~~a-gvD~ivID~a~g~s---------------~~~~~~ik~ik~~~~~~~vi-aGNV~T~e~---------- 162 (352)
T PF00478_consen 110 FERAEALVEA-GVDVIVIDSAHGHS---------------EHVIDMIKKIKKKFPDVPVI-AGNVVTYEG---------- 162 (352)
T ss_dssp HHHHHHHHHT-T-SEEEEE-SSTTS---------------HHHHHHHHHHHHHSTTSEEE-EEEE-SHHH----------
T ss_pred HHHHHHHHHc-CCCEEEccccCccH---------------HHHHHHHHHHHHhCCCceEE-ecccCCHHH----------
Q ss_pred cCCeEeeeccccCHHHHHHHHHHcCCcEEEEEEecCCCCCcccc--------CccccchhHHHHHhhhhcCCccccCCc
Q 004613 132 LGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHL--------GKEIAFLDPYLHKLKESYGINVCGEGG 202 (742)
Q Consensus 132 lgl~~l~pLW~~d~~~ll~em~~~G~~a~ii~Va~~gL~~~~~l--------G~~l~~~~~~l~~l~~~~g~~~cGEgG 202 (742)
.++|++.|.+++.| |+.|..-+ |..---..-...+..+.|++.++.-||
T Consensus 163 -----------------a~~L~~aGad~vkV-----GiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGG 219 (352)
T PF00478_consen 163 -----------------AKDLIDAGADAVKV-----GIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGG 219 (352)
T ss_dssp -----------------HHHHHHTT-SEEEE-----SSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS
T ss_pred -----------------HHHHHHcCCCEEEE-----eccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCC
No 232
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=22.07 E-value=3.9e+02 Score=27.09 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=50.9
Q ss_pred ccccCHHHHHHHHHHcCCCeEEEecCCCccc----ccccc-------cCCCcchHHHHHHHHHHHHhhCC--CceEEEEc
Q 004613 48 YQTVGHQIIVSYAECMGLPLFRRRIHGSTRH----QKLSY-------RMTPGDEVEDMYILLNEVKRQIP--SVTAVSSG 114 (742)
Q Consensus 48 ~q~v~~~~i~~~A~algiPl~~~~i~g~~~~----~~~~Y-------~~~~~de~e~l~~~L~~vk~~~~--~i~~v~~G 114 (742)
.|++|..++..+.+.-|...+-.-. ..+.. ..... ..+.....+.+.++++.++++.| ++.-++-|
T Consensus 94 ~H~lG~~~v~~~l~~~G~~vi~lG~-~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG 172 (201)
T cd02070 94 IHDIGKNLVATMLEANGFEVIDLGR-DVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGG 172 (201)
T ss_pred cchHHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEEC
Confidence 3888888888888888876532211 11100 00000 11223345678888888888876 78888888
Q ss_pred ccchhhHHHHHHHHHhhcCCeEee
Q 004613 115 AIASDYQRLRVESVCSRLGLVSLA 138 (742)
Q Consensus 115 aI~s~yqr~rve~vc~rlgl~~l~ 138 (742)
..++. ..+.++|.+..+
T Consensus 173 ~~~~~-------~~~~~~GaD~~~ 189 (201)
T cd02070 173 APVNQ-------EFADEIGADGYA 189 (201)
T ss_pred CcCCH-------HHHHHcCCcEEE
Confidence 88764 257777776554
No 233
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=21.90 E-value=3.6e+02 Score=26.37 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=44.9
Q ss_pred HHHHHHHcCCCeEEEecCCCcccccccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCe
Q 004613 56 IVSYAECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLV 135 (742)
Q Consensus 56 i~~~A~algiPl~~~~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~ 135 (742)
+...|+..|+|..+..- +.+.|.-.++++++|+. +=..+..|+..-+--..| -+.||+-
T Consensus 59 l~~lae~~gi~~~rv~a---------------~a~~e~K~~ii~eLkk~--~~k~vmVGnGaND~laLr----~ADlGI~ 117 (152)
T COG4087 59 LVQLAEFVGIPVERVFA---------------GADPEMKAKIIRELKKR--YEKVVMVGNGANDILALR----EADLGIC 117 (152)
T ss_pred HHHHHHHcCCceeeeec---------------ccCHHHHHHHHHHhcCC--CcEEEEecCCcchHHHhh----hcccceE
Confidence 77889999999988842 45567778899999975 557788898876644444 3445655
Q ss_pred Eeee
Q 004613 136 SLAY 139 (742)
Q Consensus 136 ~l~p 139 (742)
.+-+
T Consensus 118 tiq~ 121 (152)
T COG4087 118 TIQQ 121 (152)
T ss_pred Eecc
Confidence 5444
No 234
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.82 E-value=3.2e+02 Score=30.15 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhCCCceEEEE-cccchhhHHHHHHHHHhhc-----CCeEee--e--------ccccCHHHHHHHHHH
Q 004613 91 VEDMYILLNEVKRQIPSVTAVSS-GAIASDYQRLRVESVCSRL-----GLVSLA--Y--------LWKQDQSLLLQEMIT 154 (742)
Q Consensus 91 ~e~l~~~L~~vk~~~~~i~~v~~-GaI~s~yqr~rve~vc~rl-----gl~~l~--p--------LW~~d~~~ll~em~~ 154 (742)
.|++.+.++++++. |++.+.+ |+-...+...|+.++|+.+ ++...+ | .++...++.|++|.+
T Consensus 72 ~eeI~e~~~~~~~~--G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lke 149 (343)
T TIGR03551 72 LEEIAERAAEAWKA--GATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKE 149 (343)
T ss_pred HHHHHHHHHHHHHC--CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34555555555554 6655543 4444444455555555543 233222 2 256667899999999
Q ss_pred cCCcEEE
Q 004613 155 NGINAIT 161 (742)
Q Consensus 155 ~G~~a~i 161 (742)
+|++.+.
T Consensus 150 AGl~~i~ 156 (343)
T TIGR03551 150 AGLDSMP 156 (343)
T ss_pred hCccccc
Confidence 9999886
No 235
>PRK00035 hemH ferrochelatase; Reviewed
Probab=21.74 E-value=1.1e+03 Score=25.86 Aligned_cols=128 Identities=21% Similarity=0.226 Sum_probs=67.6
Q ss_pred HHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHH--HHHHHcC-CCeEEEecCCCcccccccccCCCcchHH
Q 004613 16 AMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIV--SYAECMG-LPLFRRRIHGSTRHQKLSYRMTPGDEVE 92 (742)
Q Consensus 16 al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~--~~A~alg-iPl~~~~i~g~~~~~~~~Y~~~~~de~e 92 (742)
++-.+.++|++-+.++-++|.. | +++.|+..-. ...+... .+-++. ++ .|. ...+.++
T Consensus 110 al~~l~~~G~~~IivlPL~p~~-------s--~~t~gs~~~~i~~~~~~~~~~~~i~~-i~--------~~~-~~p~~i~ 170 (333)
T PRK00035 110 ALEALKADGVDRIVVLPLYPQY-------S--YSTTASYFEDLARALAKLRLQPEIRF-IR--------SYY-DHPGYIE 170 (333)
T ss_pred HHHHHHhcCCCEEEEEECCCcc-------c--cccHHHHHHHHHHHHHhcCCCCcEEE-eC--------Ccc-CCHHHHH
Confidence 3446667899888889999864 2 4666653322 2222222 121222 11 121 1234555
Q ss_pred HHHHHHHHHHhhCC----CceEEEEcccc--------hhhH---HHHHHHHHhhcCC--e--Eeeec-------cc-cCH
Q 004613 93 DMYILLNEVKRQIP----SVTAVSSGAIA--------SDYQ---RLRVESVCSRLGL--V--SLAYL-------WK-QDQ 145 (742)
Q Consensus 93 ~l~~~L~~vk~~~~----~i~~v~~GaI~--------s~yq---r~rve~vc~rlgl--~--~l~pL-------W~-~d~ 145 (742)
.+.+.+++.-.+++ +..-|.+|+=. ..|+ ..-.+.+++++|+ . .++|. |- -+-
T Consensus 171 ~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~~gd~Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~g~~~Wl~P~~ 250 (333)
T PRK00035 171 ALAESIREALAKHGEDPEPDRLLFSAHGLPQRYIDKGDPYQQQCEETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYT 250 (333)
T ss_pred HHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhhcCCChHHHHHHHHHHHHHHhCCCCCCeEEEeeCCCCCCccCCCCH
Confidence 66666655443332 23444444321 1243 2245667888886 2 23333 43 356
Q ss_pred HHHHHHHHHcCCcEEEE
Q 004613 146 SLLLQEMITNGINAITV 162 (742)
Q Consensus 146 ~~ll~em~~~G~~a~ii 162 (742)
++.|+++.+.|++-+++
T Consensus 251 ~~~l~~l~~~g~k~V~v 267 (333)
T PRK00035 251 DDTLEELAEKGVKKVVV 267 (333)
T ss_pred HHHHHHHHHcCCCeEEE
Confidence 78899999999877776
No 236
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=21.71 E-value=6.2e+02 Score=28.53 Aligned_cols=94 Identities=13% Similarity=0.266 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHHHhhCC-CceEEEEcccchhhHHHHHHHHHhhcCCe-EeeeccccCHHHHHHHHHHcCCcEEEEEEec
Q 004613 89 DEVEDMYILLNEVKRQIP-SVTAVSSGAIASDYQRLRVESVCSRLGLV-SLAYLWKQDQSLLLQEMITNGINAITVKVAA 166 (742)
Q Consensus 89 de~e~l~~~L~~vk~~~~-~i~~v~~GaI~s~yqr~rve~vc~rlgl~-~l~pLW~~d~~~ll~em~~~G~~a~ii~Va~ 166 (742)
...|.|.++|.++|++-. |+--+|=| .|=+.-.++||+. ..-|+=+.+-....+.++++|++=+|+.++
T Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~ilveg--------~~d~~~l~~lgi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~D- 75 (360)
T PRK14719 5 ESLEKLLLIIDDLKLLAEKGIPILVEG--------PNDILSLKNLKINANFITVSNTPVFQIADDLIAENISEVILLTD- 75 (360)
T ss_pred HHHHHHHHHHHHHHHhhhCCCEEEEEc--------chHHHHHHHcCCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEEC-
Confidence 447899999999986421 33333333 3445668899995 777777777778999999999998887763
Q ss_pred CCCCCccccCccccchhHHHHHhhhhcCCcccc
Q 004613 167 MGLEPGKHLGKEIAFLDPYLHKLKESYGINVCG 199 (742)
Q Consensus 167 ~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cG 199 (742)
.||. |+.+. ...+..|. ..|+.+.|
T Consensus 76 --~d~~---G~~~~--~~~~~~L~-~aGi~V~~ 100 (360)
T PRK14719 76 --FDRA---GRVYA--KNIMEEFQ-SRGIKVNN 100 (360)
T ss_pred --CCCC---CCccc--hHHHHHHH-HCCCEEEe
Confidence 2343 66665 22233344 36887743
No 237
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=21.64 E-value=8.7e+02 Score=27.37 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=26.6
Q ss_pred CHHHHHHH-HHHHHHHHHHhcCCCcccEEEEEEEecC
Q 004613 331 GLLDDLRV-VLKQIESKLVRYGFDWGHVLYIHLYISD 366 (742)
Q Consensus 331 ~i~eQt~~-il~nL~~~L~~~G~sl~dVv~vtlyL~D 366 (742)
...++... +.+.+.+.|...|+...-++++.+++++
T Consensus 240 ~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~ 276 (420)
T PRK00885 240 EVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITK 276 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEEC
Confidence 34455544 7778888888888877778888888864
No 238
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.47 E-value=6.2e+02 Score=25.67 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEccc
Q 004613 91 VEDMYILLNEVKRQIPSVTAVSSGAI 116 (742)
Q Consensus 91 ~e~l~~~L~~vk~~~~~i~~v~~GaI 116 (742)
.+++.++++++.++++.+++|+..+-
T Consensus 64 ~~~~~~~~~~~~~~~~~id~vi~~ag 89 (256)
T PRK12745 64 LSAHEAMLDAAQAAWGRIDCLVNNAG 89 (256)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 35666777777777778999988763
No 239
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=21.44 E-value=1e+03 Score=26.73 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=46.0
Q ss_pred EEEeeCchHHHHHHHHHHHc---------CC----cEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEE
Q 004613 4 VALVSGGKDSCYAMMKCIQY---------GH----QIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRR 70 (742)
Q Consensus 4 val~SGGKDS~~al~~~~~~---------G~----~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~ 70 (742)
..+-|||..|.+..+.+.++ |. +.+.++ +.. .|--+..-|..+||++.++
T Consensus 106 G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~---s~~--------------aH~S~~Kaa~~lGlg~~~I 168 (373)
T PF00282_consen 106 GVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYV---SEQ--------------AHYSIEKAARILGLGVRKI 168 (373)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEE---ETT--------------S-THHHHHHHHTTSEEEEE
T ss_pred eeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccc---ccc--------------cccHHHHhcceeeeEEEEe
Confidence 45779999999877766542 31 233222 221 2334889999999998777
Q ss_pred ecCCCcccccccccCCCcchHHHHHHHHHHHHhh
Q 004613 71 RIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQ 104 (742)
Q Consensus 71 ~i~g~~~~~~~~Y~~~~~de~e~l~~~L~~vk~~ 104 (742)
++... + .-.+++|.++|++..++
T Consensus 169 ~~~~~-------~----~md~~~L~~~l~~~~~~ 191 (373)
T PF00282_consen 169 PTDED-------G----RMDIEALEKALEKDIAN 191 (373)
T ss_dssp -BBTT-------S----SB-HHHHHHHHHHHHHT
T ss_pred cCCcc-------h----hhhHHHhhhhhcccccc
Confidence 76532 1 23568888888887765
No 240
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.10 E-value=1.4e+02 Score=33.71 Aligned_cols=43 Identities=23% Similarity=0.458 Sum_probs=30.1
Q ss_pred cccceEEEEEe--ecCCCccHhHHHHHHHHHHHHHHhhCCCccccCcceeEEEeecccCcc
Q 004613 668 WEDVTNLRLYF--PTSLSMPMVTLSAIFSSAFDELAVMNPRMKIDGDSIFNLVPVLGAGRS 726 (742)
Q Consensus 668 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (742)
-|+=+|+=+|| |+++++..-++.. |++|++. +|||||+|=--+
T Consensus 126 ~D~RVH~cLYFI~P~ghgL~p~Di~~-----Mk~l~~~-----------vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 126 KDNRVHCCLYFISPTGHGLKPLDIEF-----MKKLSKK-----------VNLIPVIAKADT 170 (366)
T ss_pred cCCceEEEEEEeCCCCCCCcHhhHHH-----HHHHhcc-----------ccccceeecccc
Confidence 35567999999 6688777766653 4555543 899999975443
No 241
>PRK12414 putative aminotransferase; Provisional
Probab=21.00 E-value=5.8e+02 Score=28.23 Aligned_cols=96 Identities=9% Similarity=0.248 Sum_probs=49.8
Q ss_pred EEEeeCchHHHHHHHHHH-HcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccccc
Q 004613 4 VALVSGGKDSCYAMMKCI-QYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQKLS 82 (742)
Q Consensus 4 val~SGGKDS~~al~~~~-~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~~~ 82 (742)
+++.+||.+.+..+++++ ..|-+|+. .-|. |. .....++..|..+..+++... +
T Consensus 93 i~it~g~~~al~~~~~~l~~~gd~Vlv---~~p~---------y~-------~~~~~~~~~g~~~~~v~~~~~------~ 147 (384)
T PRK12414 93 VTVIASASEGLYAAISALVHPGDEVIY---FEPS---------FD-------SYAPIVRLQGATPVAIKLSPE------D 147 (384)
T ss_pred EEEECChHHHHHHHHHHhcCCCCEEEE---eCCC---------cc-------chHHHHHHcCCEEEEEecCcc------c
Confidence 678899999887777665 34533222 2221 11 123346667887766655311 0
Q ss_pred ccCCCcchHHHHHHHHHHHHhhCCCceEEEE-------cccchhhHHHHHHHHHhhcCC
Q 004613 83 YRMTPGDEVEDMYILLNEVKRQIPSVTAVSS-------GAIASDYQRLRVESVCSRLGL 134 (742)
Q Consensus 83 Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~-------GaI~s~yqr~rve~vc~rlgl 134 (742)
| .-..++|.++++ ++.++|+. |.+++.-++.++-.+|++.|+
T Consensus 148 ~----~~d~~~l~~~l~------~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~ 196 (384)
T PRK12414 148 F----RVNWDEVAAAIT------PRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDI 196 (384)
T ss_pred c----ccCHHHHHhhcC------cccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCe
Confidence 1 112344444332 24566654 777766555555455554443
No 242
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=20.69 E-value=1.3e+02 Score=26.22 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=29.1
Q ss_pred CcchHHHHHHHHHHHHhhCCCceEEEEcccchh
Q 004613 87 PGDEVEDMYILLNEVKRQIPSVTAVSSGAIASD 119 (742)
Q Consensus 87 ~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~ 119 (742)
..++.+++.+.|+.++.++|+|..+.+|-..+.
T Consensus 14 ~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~ 46 (97)
T PF07876_consen 14 TEEEIEEVLEALRALKDKIPGIVSFEVGRNFSP 46 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTECEEEEEEESST
T ss_pred CHHHHHHHHHHHHhcccCCCceEEEEEEcccCc
Confidence 467888999999999999999999999988764
No 243
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.52 E-value=6e+02 Score=24.51 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=17.0
Q ss_pred cccCHHHHHHHHHHcCCCeEEE
Q 004613 49 QTVGHQIIVSYAECMGLPLFRR 70 (742)
Q Consensus 49 q~v~~~~i~~~A~algiPl~~~ 70 (742)
|.+|..++....++-|...+--
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~L 35 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNL 35 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEEC
Confidence 8888888888888888776544
No 244
>PLN02285 methionyl-tRNA formyltransferase
Probab=20.41 E-value=4.7e+02 Score=29.01 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=22.2
Q ss_pred CCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCe
Q 004613 24 GHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPL 67 (742)
Q Consensus 24 G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl 67 (742)
+|+|+++++-.|.....+. ..-..-+..+|+..|||.
T Consensus 35 ~~~iv~Vvt~~~~~~gr~~-------~~~~~pv~~~A~~~gIp~ 71 (334)
T PLN02285 35 AFEVAAVVTQPPARRGRGR-------KLMPSPVAQLALDRGFPP 71 (334)
T ss_pred CCeEEEEEeCCCCcccCCc-------ccCCCHHHHHHHHcCCCc
Confidence 6999999887544321110 011112677899999994
No 245
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=20.18 E-value=2e+02 Score=23.81 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeee
Q 004613 93 DMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAY 139 (742)
Q Consensus 93 ~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~p 139 (742)
++...|..++... .-+.+.|=.-++.+||..|-.+|+.+||.+.+.
T Consensus 3 ~~~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~S~ 48 (60)
T cd02641 3 HLKAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRHEST 48 (60)
T ss_pred hHHHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCceEee
Confidence 4556666666542 335566666688999999999999999988764
No 246
>PRK09061 D-glutamate deacylase; Validated
Probab=20.07 E-value=7.4e+02 Score=29.06 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=74.6
Q ss_pred CCcchHHHHHHHHHHHHhhCCCceEEEEccc----chhhHHHHHHHHHhhcCCeEeeeccccC------H----HHHHHH
Q 004613 86 TPGDEVEDMYILLNEVKRQIPSVTAVSSGAI----ASDYQRLRVESVCSRLGLVSLAYLWKQD------Q----SLLLQE 151 (742)
Q Consensus 86 ~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI----~s~yqr~rve~vc~rlgl~~l~pLW~~d------~----~~ll~e 151 (742)
...+|+++|.+++++..++ |+.++.+|.. .++++-.++-+.+++.|.....=....+ . .++++-
T Consensus 163 ~t~~el~~m~~ll~~al~~--Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~l 240 (509)
T PRK09061 163 ATPAELAEILELLEQGLDE--GALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIAA 240 (509)
T ss_pred CCHHHHHHHHHHHHHHHHC--CCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHHH
Confidence 3467888999999877776 9999988643 2667777888899999988776555442 1 223333
Q ss_pred HHHcCCcEEEEEEecCCCCCccccCccccchhHHHHHhhhhcCCccccCCceeE
Q 004613 152 MITNGINAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEYE 205 (742)
Q Consensus 152 m~~~G~~a~ii~Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGEye 205 (742)
....|.+..|+-+.+.|-.+ ..+..+.+.+.. +.|+++..|--=|+
T Consensus 241 A~~~G~rv~IsHlss~g~~~-------~~~~le~I~~Ar-~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 241 AAETGAHMHICHVNSTSLRD-------IDRCLALVEKAQ-AQGLDVTTEAYPYG 286 (509)
T ss_pred HHHhCCCEEEEeeccCCccc-------HHHHHHHHHHHH-HcCCcEEEEecCcc
Confidence 34689998888887766321 222334454544 35888888877666
Done!