Query 004613
Match_columns 742
No_of_seqs 435 out of 2714
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 18:30:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004613.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1910-1914//hhsearch_pdb/004613hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjz_A N-type ATP pyrophosphat 1.0 1 1 484.1 24.1 226 1-252 5-231 (237)
2 2b33_A Protein synthesis inhib 1.0 1 1 192.9 17.2 123 427-567 17-139 (140)
3 3k0t_A Endoribonuclease L-PSP, 1.0 1 1 190.4 14.2 118 429-565 25-142 (143)
4 1xrg_A Putative translation in 1.0 1 1 190.3 14.6 120 428-565 37-156 (156)
5 3lyb_A Putative endoribonuclea 1.0 1 1 190.2 13.4 127 427-571 2-155 (165)
6 3m1x_A Putative endoribonuclea 1.0 1 1 189.7 16.0 119 429-565 30-148 (148)
7 1x25_A Hypothetical UPF0076 pr 1.0 1 1 189.0 15.4 121 428-566 8-128 (128)
8 3r0p_A L-PSP putative endoribo 1.0 1 1 188.7 16.0 119 429-565 9-127 (127)
9 1qah_A Perchloric acid soluble 1.0 1 1 187.7 15.5 121 429-567 10-130 (136)
10 3l7q_A Putative translation in 1.0 1 1 187.7 14.6 120 428-565 5-124 (125)
No 1
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=1.00 E-value=1 Score=484.14 Aligned_cols=226 Identities=35% Similarity=0.557 Sum_probs=211.3
Q ss_pred CEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 90999940865799999999991990889998305999988667633444378999999998099869992279755444
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
||++++|||||||++|+++|+++||+|++|.+++|.+. +|||||+++++.++++|++||||++++.++|.
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~G~eV~~L~~~~~~~~-----~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~----- 74 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKNRFSVKFLVTMVSENE-----ESYMYHTINANLTDLQARALGIPLVKGFTQGE----- 74 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEEECC-------------CCSSSHHHHHHHHHTCCEEEEEC--------
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCC-----CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC-----
T ss_conf 78999911858999999999986990899999758999-----85026771578999999986997899978888-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEE
Q ss_conf 43458993059999999999885289930999832001667878999874339859640456698999999998699199
Q 004613 81 LSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 81 ~~y~~~~~de~e~l~~lL~~~k~~~~~v~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
+++|+|+|+++|+++ ++++|++|||+|+|||.|+|++|.|+|+++++|||++||++||+||++.||+|+
T Consensus 75 ------~~~e~e~l~~~l~~~-----~i~~vv~Gdi~s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i~~G~~ai 143 (237)
T 3rjz_A 75 ------KEKEVEDLKRVLSGL-----KIQGIVAGALASKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELLNLGFKIM 143 (237)
T ss_dssp ---------CHHHHHHHHTTS-----CCSEEECC---CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHHHTTCEEE
T ss_pred ------CHHHHHHHHHHHHHC-----CCCEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCEEE
T ss_conf ------438999999999865-----995899997560989877888999869989855147899999999998799799
Q ss_pred EEEEECCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCEEE
Q ss_conf 999816998974644841013-0679997434209954558832488862688988632599434699817998444157
Q 004613 161 TVKVAAMGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGV 239 (742)
Q Consensus 161 ivkVa~~gL~~~~~LG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeTlvlD~PlF~~~ri~i~~~~~~~~~~~~~~~~~~ 239 (742)
||+|++.||++ +||||++++ +.+.|.+++++||+|||||||||||||+|||+|++ ||++++.++++++++ .+||
T Consensus 144 iv~v~~~gL~~-~~lG~~l~~~~~~~L~~l~~~~gvd~cGEgGEfhT~V~d~PlF~~-~i~i~~~e~v~~~~~---~~~~ 218 (237)
T 3rjz_A 144 VVGVSAYGLDE-SWLGRILDESALEELITLNEKYKVHVAGEGGEFETFVLDMPLFKY-KIVVDKAKKVWEPCT---SSGK 218 (237)
T ss_dssp EEEEESTTCCG-GGTTCBCCHHHHHHHHHHHHHHCCCTTCTTTTEEEEEEECTTCSE-EEEEEEEEEC--CCS---SEEE
T ss_pred EEEEECCCCCH-HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCE-EEEEEEEEEEEECCC---CEEE
T ss_conf 99985699995-897884689999999977754680416898256798983676332-468777899995687---2799
Q ss_pred EEEEEEEEEECCC
Q ss_conf 9841259976366
Q 004613 240 LHPLAFHLEYKAG 252 (742)
Q Consensus 240 l~~~~~~l~~k~~ 252 (742)
+.|++++|++|-+
T Consensus 219 ~~i~~a~l~~~~~ 231 (237)
T 3rjz_A 219 LIIEEAHLESKLE 231 (237)
T ss_dssp EEEEEEEEEECCC
T ss_pred EEEEEEEEEEHHH
T ss_conf 9999999860121
No 2
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=1.00 E-value=1 Score=192.90 Aligned_cols=123 Identities=25% Similarity=0.373 Sum_probs=114.1
Q ss_pred CCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCC
Q ss_conf 46889999999854201217889994113578999732479989999999999999999919998513599999970265
Q 004613 427 SISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYV 506 (742)
Q Consensus 427 ~~S~waP~~iGPYSQAv~~g~~vyISGQI~L~P~tm~l~~~di~~Qa~~aLqnL~aVL~aaG~sl~dv~V~~tvYlsd~~ 506 (742)
..++|+|.++|||||++++|+++|+|||+|++|.++.+..+++++|++++|+|+.++|+++|++++++ +++++|+++
T Consensus 17 ~~~~~~p~~~g~ys~av~~g~~lfvSGq~~~d~~tG~~~~~d~~~Qt~~~l~ni~~~L~~aG~~l~~V-vk~tvyl~d-- 93 (140)
T 2b33_A 17 VETDKAPKAIGPYSQAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSLKDV-VKVTVFTTS-- 93 (140)
T ss_dssp ECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTTTCCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC--
T ss_pred ECCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHE-EEEEEEECC--
T ss_conf 03888899988867789999999997468837999946797999999999999999999809998997-999999887--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEEC
Q ss_conf 5033899999999999985555453201358999818999838999998089999999508
Q 004613 507 ASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTD 567 (742)
Q Consensus 507 ~~sd~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~Part~V~V~~LPkgAlVEIe~vA~v~d 567 (742)
+.++..+++.|.+|| ++.+|+|++|+|+.||++++|||+++|.+++
T Consensus 94 -~~df~~~n~v~~~~f--------------~~~~PArt~V~V~~L~~~~lVEIe~iA~~~~ 139 (140)
T 2b33_A 94 -MDYFQRVNEVYSRYF--------------GDHRPARSFVAVAQLPRNVEIEIEAIAVKEG 139 (140)
T ss_dssp -GGGHHHHHHHHHHHH--------------TTTCCEEEEEECSCCGGGCSEEEEEEEECCC
T ss_pred -CHHHHHHHHHHHHHC--------------CCCCCCEEEEECCCCCCCCEEEEEEEEEECC
T ss_conf -055999999999987--------------9999957999902278998899999999679
No 3
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=1.00 E-value=1 Score=190.44 Aligned_cols=118 Identities=30% Similarity=0.445 Sum_probs=109.1
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCH
Q ss_conf 88999999985420121788999411357899973247998999999999999999991999851359999997026550
Q 004613 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 508 (742)
Q Consensus 429 S~waP~~iGPYSQAv~~g~~vyISGQI~L~P~tm~l~~~di~~Qa~~aLqnL~aVL~aaG~sl~dv~V~~tvYlsd~~~~ 508 (742)
+.++|+|+|||||+++.|+++|+|||+|++|.++.+.. |+++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 25 ~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~~g~~~~-d~~~Qt~~~l~ni~aiL~~aG~~l~~V-vk~tvyl~d---~ 99 (143)
T 3k0t_A 25 SDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPSTMELVE-GIEAQITQVFENLKSVAQAAGGSFKDI-VKLNIFLTD---L 99 (143)
T ss_dssp CTTSCCCCSSCCSEEEETTEEEEEEECSBCTTTCSBCS-SHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCHHHE-EEEEEEECC---H
T ss_conf 99888888986868999999999635770799990784-999999999999999999829996797-999999867---5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf 338999999999999855554532013589998189998389999980899999995
Q 004613 509 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 565 (742)
Q Consensus 509 sd~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~Part~V~V~~LPkgAlVEIe~vA~v 565 (742)
.++..+++.|.+|| +..+|+|++|+|+.||++++|||+++|.+
T Consensus 100 ~df~~~n~v~~~~f--------------~~~~PArt~v~V~~Lp~~~lVEIe~iA~~ 142 (143)
T 3k0t_A 100 GHFAKVNEIMGSYF--------------SQPYPARAAIGVAALPRGAQVEMDAILVI 142 (143)
T ss_dssp GGHHHHHHHHTTTC--------------CSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHC--------------CCCCCCEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 88999999999980--------------99999379999033899987999999997
No 4
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=1.00 E-value=1 Score=190.35 Aligned_cols=120 Identities=27% Similarity=0.385 Sum_probs=111.1
Q ss_pred CCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCC
Q ss_conf 68899999998542012178899941135789997324799899999999999999999199985135999999702655
Q 004613 428 ISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVA 507 (742)
Q Consensus 428 ~S~waP~~iGPYSQAv~~g~~vyISGQI~L~P~tm~l~~~di~~Qa~~aLqnL~aVL~aaG~sl~dv~V~~tvYlsd~~~ 507 (742)
.++|+|+++||||||+++|+++|+|||+|++|.++.+..+++++|++++|+|+.++|+++|++++++ +++++|++|
T Consensus 37 ~~~~~p~~~g~YS~av~~g~~lfvSGq~~~d~~tG~l~~~d~~~Qt~~~l~ni~~iL~~aG~~l~~V-vk~tvyl~d--- 112 (156)
T 1xrg_A 37 KTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKV-VKTTVFIKD--- 112 (156)
T ss_dssp CCTTSCCCCSSCCSEEEETTEEEECCBCCBCTTTSSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---
T ss_pred CCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHE-EEEEEEECC---
T ss_conf 5898888888877789999999997478727998958786899999999999999999809998997-999999877---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf 0338999999999999855554532013589998189998389999980899999995
Q 004613 508 SSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 565 (742)
Q Consensus 508 ~sd~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~Part~V~V~~LPkgAlVEIe~vA~v 565 (742)
+.++..+|+.|.+|| ++.+|+|++|+|+.||++++|||+++|++
T Consensus 113 ~~df~~~n~v~~~~f--------------~~~~PArt~V~V~~Lp~~~lVEIe~iA~~ 156 (156)
T 1xrg_A 113 MDSFAKVNEVYAKYF--------------SEPYPARSCVEVSKLPKGVLIEIEAVAIK 156 (156)
T ss_dssp GGGHHHHHHHHHTTC--------------CSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHC--------------CCCCCCEEEEECCCCCCCCEEEEEEEEEC
T ss_conf 377999999999984--------------99999659999077899986999999979
No 5
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=1.00 E-value=1 Score=190.16 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=114.8
Q ss_pred CCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCC-------------------------CHHHHHHHHHHHHH
Q ss_conf 46889999999854201217889994113578999732479-------------------------98999999999999
Q 004613 427 SISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNG-------------------------GPTVELEQALQNSE 481 (742)
Q Consensus 427 ~~S~waP~~iGPYSQAv~~g~~vyISGQI~L~P~tm~l~~~-------------------------di~~Qa~~aLqnL~ 481 (742)
+.+.++|+|+|||||++++|+++|+|||+|++|.++.+..+ ++++|++++|+|+.
T Consensus 2 ~~~~~ap~p~g~Ys~av~~G~~lfvSGq~~~~~~~g~l~~g~~~~~~~~~~~~g~~G~~g~~~~~~d~~~Qt~~~l~Ni~ 81 (165)
T 3lyb_A 2 SLEAGAGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEFSTDAKQGPILAQSWYVLESIR 81 (165)
T ss_dssp -------------CCEEEETTEEEECCBCCEETTTTEECCSGGGSCHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 88888999989867789999999995107737999957467545432211222444543445465389999999999999
Q ss_pred HHHHHCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC-C-CCCEEEE
Q ss_conf 9999919998513599999970265503389999999999998555545320135899981899983899-9-9980899
Q 004613 482 AVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNL-P-KSALVEI 559 (742)
Q Consensus 482 aVL~aaG~sl~dv~V~~tvYlsd~~~~sd~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~Part~V~V~~L-P-kgAlVEI 559 (742)
++|+++|++++++ +++++|+++ +.++..+++.|.+|| ++.+|+|++|+|+.| | ++++|||
T Consensus 82 aiL~~aG~~l~~V-vkvtvyl~d---~~df~~~n~v~~~~f--------------~~~~PArt~V~V~~L~p~~~~lVEI 143 (165)
T 3lyb_A 82 RTVASAGGQMSDV-IKLVQYFRN---LDHFPYYSRVRKLFY--------------PDQPPVSTVVQVSEMLPDATVLIEV 143 (165)
T ss_dssp HHHHTTTCCGGGE-EEEEEEESC---GGGHHHHHHHHHHHC--------------SSCCCEEEEEECSCCSSCTTCCEEE
T ss_pred HHHHHHCCCHHHH-EEEEEEECC---HHHHHHHHHHHHHHC--------------CCCCCCEEEEECCCCCCCCCCEEEE
T ss_conf 9999820886380-799999777---788689999999981--------------9999956999816357999987999
Q ss_pred EEEEEEECCCCH
Q ss_conf 999995089811
Q 004613 560 KPILYVTDDSET 571 (742)
Q Consensus 560 e~vA~v~d~~~~ 571 (742)
+++|.++...+.
T Consensus 144 e~iA~~~~~~~~ 155 (165)
T 3lyb_A 144 EATVWLPPSFNS 155 (165)
T ss_dssp EEEEECC-----
T ss_pred EEEEEECCCCCC
T ss_conf 999994788874
No 6
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=1.00 E-value=1 Score=189.69 Aligned_cols=119 Identities=24% Similarity=0.243 Sum_probs=111.7
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCH
Q ss_conf 88999999985420121788999411357899973247998999999999999999991999851359999997026550
Q 004613 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 508 (742)
Q Consensus 429 S~waP~~iGPYSQAv~~g~~vyISGQI~L~P~tm~l~~~di~~Qa~~aLqnL~aVL~aaG~sl~dv~V~~tvYlsd~~~~ 508 (742)
++|+|+|+|||||++++|+++|+|||+|++|.++.++++++++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 30 ~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~~G~~~~~d~~~Q~~~~l~nl~aiL~~aG~~l~~V-vk~tvyl~d---~ 105 (148)
T 3m1x_A 30 SPLAPEAVGAYSQAIICNGXVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKV-VKTTCLLAD---I 105 (148)
T ss_dssp CSSSCCCCSSCCSEEEETTEEEEEEEESEETTTTEESCSSHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHE-EEEEEEECC---H
T ss_conf 998888889977589999999998457847999968798999999999999999999829998997-999999778---8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf 338999999999999855554532013589998189998389999980899999995
Q 004613 509 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 565 (742)
Q Consensus 509 sd~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~Part~V~V~~LPkgAlVEIe~vA~v 565 (742)
.++..+|+.|.+|| +..+|+|++|+|+.||++++|||+++|.+
T Consensus 106 ~df~~~n~v~~~~f--------------g~~~PArt~V~V~~L~~~~lVEIe~iA~l 148 (148)
T 3m1x_A 106 KDFGVFNGIYAEAF--------------GNHKPARACFAAAALPKGALVEVECIATL 148 (148)
T ss_dssp GGHHHHHHHHHHHH--------------TTCCCEEEEEECSCCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHH--------------CCCCCCEEEEECCCCCCCCEEEEEEEEEC
T ss_conf 88999999999980--------------99999389998465899987999999979
No 7
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=1.00 E-value=1 Score=189.02 Aligned_cols=121 Identities=29% Similarity=0.355 Sum_probs=112.3
Q ss_pred CCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCC
Q ss_conf 68899999998542012178899941135789997324799899999999999999999199985135999999702655
Q 004613 428 ISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVA 507 (742)
Q Consensus 428 ~S~waP~~iGPYSQAv~~g~~vyISGQI~L~P~tm~l~~~di~~Qa~~aLqnL~aVL~aaG~sl~dv~V~~tvYlsd~~~ 507 (742)
.++|+|.++|||||++++|+++|+|||+|++|.++.+..+++++|++++|+|+.++|+++|++++++ +++++|++|
T Consensus 8 ~~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~l~~v-vk~~vyl~d--- 83 (128)
T 1x25_A 8 FTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDV-AMAFVFLKD--- 83 (128)
T ss_dssp CCTTSCCCCSSCCSEEEETTEEEEEEECSEETTTTEECSSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---
T ss_pred CCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHE-EEEEEEECC---
T ss_conf 6898998989967789999999995127737998968785699999999999999999809998997-999999788---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEE
Q ss_conf 03389999999999998555545320135899981899983899999808999999950
Q 004613 508 SSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVT 566 (742)
Q Consensus 508 ~sd~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~Part~V~V~~LPkgAlVEIe~vA~v~ 566 (742)
+.++..+++.|.+|| ++++|+|++|+|+.||++++|||+++|.++
T Consensus 84 ~~~~~~~n~~~~~~f--------------~~~~Part~v~V~~L~~~~~VEIe~iA~~~ 128 (128)
T 1x25_A 84 MNMFNDFNSVYAEYF--------------KDKPPARVTVEVSRLPKDALIEIAVICSKG 128 (128)
T ss_dssp GGGHHHHHHHHHHHC--------------CSSCCEEEEEECSCCGGGCSEEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHC--------------CCCCCCEEEEECCCCCCCCEEEEEEEEEEC
T ss_conf 899999999999984--------------999997899990018999989999999939
No 8
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=1.00 E-value=1 Score=188.70 Aligned_cols=119 Identities=27% Similarity=0.401 Sum_probs=111.1
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCH
Q ss_conf 88999999985420121788999411357899973247998999999999999999991999851359999997026550
Q 004613 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 508 (742)
Q Consensus 429 S~waP~~iGPYSQAv~~g~~vyISGQI~L~P~tm~l~~~di~~Qa~~aLqnL~aVL~aaG~sl~dv~V~~tvYlsd~~~~ 508 (742)
+.|+|.|+|||||++++|+++|+|||+|++|.++.+..+++++|++++|+|+.++|+++|++++++ +++++|+++ +
T Consensus 9 ~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~v-vk~~vyl~d---~ 84 (127)
T 3r0p_A 9 SDNAPAAIGTYSQAVKVNNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFKNLRAVCEAAGGGLRDI-VKLNVYLTD---L 84 (127)
T ss_dssp CTTSCCCCSSCCSEEEETTEEEEEEECSBCTTTSSBCSSCHHHHHHHHHHHHHHHHHHTTSCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHE-EEEEEEECC---H
T ss_conf 988898989987769999999992537707999958787899999999999999999939998997-999999868---8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf 338999999999999855554532013589998189998389999980899999995
Q 004613 509 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 565 (742)
Q Consensus 509 sd~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~Part~V~V~~LPkgAlVEIe~vA~v 565 (742)
.++..+++.|.+|| ++++|+|++++|+.||++++|||+++|.+
T Consensus 85 ~~~~~~~~v~~~~f--------------~~~~Part~v~V~~L~~~~~VEIe~iA~~ 127 (127)
T 3r0p_A 85 ANFPIVNEVMGQYF--------------QAPYPARAAIGINQLPRASLIEADGIMVI 127 (127)
T ss_dssp GGHHHHHHHHHHHC--------------CSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHC--------------CCCCCCEEEEECCCCCCCCEEEEEEEEEC
T ss_conf 89999999999982--------------99999679999265899998999999989
No 9
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=1.00 E-value=1 Score=187.71 Aligned_cols=121 Identities=27% Similarity=0.399 Sum_probs=112.2
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCH
Q ss_conf 88999999985420121788999411357899973247998999999999999999991999851359999997026550
Q 004613 429 SCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVAS 508 (742)
Q Consensus 429 S~waP~~iGPYSQAv~~g~~vyISGQI~L~P~tm~l~~~di~~Qa~~aLqnL~aVL~aaG~sl~dv~V~~tvYlsd~~~~ 508 (742)
+.|+|.++|||||++++|+++|+|||+|++|.++.+.++++++|++++|+|+.++|+++|++++++ +++++|++| +
T Consensus 10 ~~~~p~~~g~ys~av~~g~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~v-vk~~vyl~d---~ 85 (136)
T 1qah_A 10 TSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNV-VKTTVLLAD---I 85 (136)
T ss_dssp CTTSCCCSSSCCSEEEETTEEEEEEECCBCTTTCSBCSSCHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEEEEESC---G
T ss_pred CCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHE-EEEEEEECC---C
T ss_conf 998888889877789999999995278837999948786899999999999999999819997998-999999836---7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEEC
Q ss_conf 33899999999999985555453201358999818999838999998089999999508
Q 004613 509 SERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYVTD 567 (742)
Q Consensus 509 sd~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~Part~V~V~~LPkgAlVEIe~vA~v~d 567 (742)
.++..+++.|.+|| ++.+|+|++|+|+.||++++|||+++|.+++
T Consensus 86 ~d~~~~n~~~~~~f--------------~~~~Part~v~V~~L~~~~~VEIe~iA~~~~ 130 (136)
T 1qah_A 86 NDFGTVNEIYKTYF--------------QGNLPARAAYQVAALPKGSRIEIEAIAVQGP 130 (136)
T ss_dssp GGHHHHHHHHHTTC--------------CSSCCEEEEEECSCCGGGCSEEEEEEEECSC
T ss_pred CCHHHHHHHHHHHC--------------CCCCCCEEEEECCCCCCCCEEEEEEEEEECC
T ss_conf 54999999999980--------------9999947999900188999999999999688
No 10
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=1.00 E-value=1 Score=187.67 Aligned_cols=120 Identities=23% Similarity=0.255 Sum_probs=110.9
Q ss_pred CCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCC
Q ss_conf 68899999998542012178899941135789997324799899999999999999999199985135999999702655
Q 004613 428 ISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAIYFVVYCSTYVA 507 (742)
Q Consensus 428 ~S~waP~~iGPYSQAv~~g~~vyISGQI~L~P~tm~l~~~di~~Qa~~aLqnL~aVL~aaG~sl~dv~V~~tvYlsd~~~ 507 (742)
.++|+|+|+|||||++++|+++|+|||+|++|.++.+.++|+++|++++|+|+.++|+++|++++++ +++++|+++
T Consensus 5 ~~~~~p~p~g~ys~av~~g~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~v-vk~~vyl~d--- 80 (125)
T 3l7q_A 5 HTDKAPAAIGPYVQGKIVGNLLFASGQVPLSPETGQVIGTTIEEQTQQVLKNISAILTEAGTDFDHV-VKTTCFLSD--- 80 (125)
T ss_dssp CCTTSCCCCSSCBSEEEETTEEEEEEECSBCTTTCSBCCSSHHHHHHHHHHHHHHHHHHHTCCGGGE-EEEEEEESC---
T ss_pred CCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHE-EEEEEEECC---
T ss_conf 6898999989977789999999990437737998989886899999999999999998719997998-999999857---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf 0338999999999999855554532013589998189998389999980899999995
Q 004613 508 SSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSALVEIKPILYV 565 (742)
Q Consensus 508 ~sd~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~Part~V~V~~LPkgAlVEIe~vA~v 565 (742)
+.++..+++.|.+|| ++.+|+|++++|+.||++++|||+++|.+
T Consensus 81 ~~~~~~~n~v~~~~f--------------~~~~Part~v~v~~L~~~~~VEIe~iA~v 124 (125)
T 3l7q_A 81 IDDFVPFNEVYATAF--------------KSDFPARSAVEVARLPKDVKIEIEVIAEL 124 (125)
T ss_dssp GGGHHHHHHHHHTTC--------------CSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHC--------------CCCCCCEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 888999999999984--------------99999679999255899998999999996
Done!