BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004614
(742 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UWE|A Chain A, Akr1c3 Complexed With 3-Phenoxybenzoic Acid
Length = 331
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE+ SL+ L+Y++L+ ++ + + E L + G ++D +DLC
Sbjct: 90 HRPELVRPALEN--SLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTT 147
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E++++ GL +GV++F + +++ K G+ KP
Sbjct: 148 ---WEAMEKC---------KDAGLAKSIGVSNFNRRQLEMILNKPGLKYKP 186
>pdb|1RY0|A Chain A, Structure Of Prostaglandin F Synthase With Prostaglandin
D2
pdb|1RY0|B Chain B, Structure Of Prostaglandin F Synthase With Prostaglandin
D2
pdb|1RY8|A Chain A, Prostaglandin F Synthase Complexed With Nadph And Rutin
pdb|1RY8|B Chain B, Prostaglandin F Synthase Complexed With Nadph And Rutin
pdb|1XF0|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) Complexed With Delta4-
Androstene-3,17-Dione And Nadp
pdb|2F38|A Chain A, Crystal Structure Of Prostaglandin F Synathase Containing
Bimatoprost
pdb|1ZQ5|A Chain A, Crystal Structure Of Human Androgenic
17beta-Hydroxysteroid Dehydrogenase Type 5 In Complexed
With A Potent Inhibitor Em1404
pdb|2FGB|A Chain A, Crystal Structure Of Human 17bet A-Hydroxysteroid
Dehydrogenase Type 5 In Complexes With Peg And Nadp
pdb|4DBS|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3'-[(4-Nitronaphthalen-1-Yl) Amino]benzoic Acid
pdb|4DBS|B Chain B, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3'-[(4-Nitronaphthalen-1-Yl) Amino]benzoic Acid
pdb|4DBU|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3-((4 -(Trifluoromethyl)phenyl) Amino)benzoic Acid
pdb|4DBU|B Chain B, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3-((4 -(Trifluoromethyl)phenyl) Amino)benzoic Acid
Length = 323
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE+ SL+ L+Y++L+ ++ + + E L + G ++D +DLC
Sbjct: 90 HRPELVRPALEN--SLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTT 147
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E++++ GL +GV++F + +++ K G+ KP
Sbjct: 148 ---WEAMEKC---------KDAGLAKSIGVSNFNRRQLEMILNKPGLKYKP 186
>pdb|1S1P|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase
(Akr1c3) In Complex With The Non-Steroidal Anti-
Inflammatory Drugs Flufenamic Acid And Indomethacin
pdb|1S1R|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase
(Akr1c3) In Complex With The Non-Steroidal Anti-
Inflammatory Drugs Flufenamic Acid And Indomethacin
pdb|1S2A|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase In
Complex With The Non-Steroidal Anti-Inflammatory Drugs
Flufenamic Acid And Indomethacin
pdb|1S2C|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase In
Complex With The Non-Steroidal Anti-Inflammatory Drugs
Flufenamic Acid And Indomethacin
Length = 331
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE+ SL+ L+Y++L+ ++ + + E L + G ++D +DLC
Sbjct: 90 HRPELVRPALEN--SLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTT 147
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E++++ GL +GV++F + +++ K G+ KP
Sbjct: 148 ---WEAMEKC---------KDAGLAKSIGVSNFNRRQLEMILNKPGLKYKP 186
>pdb|3R43|A Chain A, Akr1c3 Complexed With Mefenamic Acid
pdb|3R58|A Chain A, Akr1c3 Complex With Naproxen
pdb|3R6I|A Chain A, Akr1c3 Complex With Meclofenamic Acid
pdb|3R7M|A Chain A, Akr1c3 Complex With Sulindac
pdb|3R8G|A Chain A, Akr1c3 Complex With Ibuprofen
pdb|3R8H|A Chain A, Akr1c3 Complex With Zomepirac
pdb|3R94|A Chain A, Akr1c3 Complex With Flurbiprofen
pdb|3UFY|A Chain A, Akr1c3 Complex With R-Naproxen
pdb|3UG8|A Chain A, Akr1c3 Complex With Indomethacin At Ph 7.5
pdb|3UGR|A Chain A, Akr1c3 Complex With Indomethacin At Ph 6.8
pdb|4FA3|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
(R)-1-(Naphthalen-2-Ylsulfonyl)piperidine-3- Carboxylic
Acid (86)
pdb|4FAL|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
3-((3,4-Dihydroisoquinolin-2(1h)-Yl)sulfonyl)-N-
Methylbenzamide (80)
pdb|4FAM|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
3-((3,4-Dihydroisoquinolin-2(1h)-Yl)sulfonyl)benzoic
Acid (17)
pdb|4FAM|B Chain B, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
3-((3,4-Dihydroisoquinolin-2(1h)-Yl)sulfonyl)benzoic
Acid (17)
Length = 331
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE+ SL+ L+Y++L+ ++ + + E L + G ++D +DLC
Sbjct: 90 HRPELVRPALEN--SLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTT 147
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E++++ GL +GV++F + +++ K G+ KP
Sbjct: 148 ---WEAMEKC---------KDAGLAKSIGVSNFNRRQLEMILNKPGLKYKP 186
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 68 NEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVR 123
+ G+PD+ Y+F D Y + +RG + +A+ G AL HL P VR
Sbjct: 67 GQSGKPDIAYRFFDHVRYLDAFIEQRGVTSAY-LVAQDWGTALAFHLAARRPDFVR 121
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 68 NEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVR 123
+ G+PD+ Y+F D Y + +RG + +A+ G AL HL P VR
Sbjct: 67 GQSGKPDIAYRFFDHVRYLDAFIEQRGVTSAY-LVAQDWGTALAFHLAARRPDFVR 121
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 68 NEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVR 123
+ G+PD+ Y+F D Y + +RG + +A+ G AL HL P VR
Sbjct: 67 GQSGKPDIAYRFFDHVRYLDAFIEQRGVTSAY-LVAQDWGTALAFHLAARRPDFVR 121
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 7/148 (4%)
Query: 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG-----DALKPHLRLLIPKLVRFQYD 127
PDL+ K L + + N+ GA KI + + D L L + IPK ++F
Sbjct: 127 PDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIXIPKFLQFFKH 185
Query: 128 PDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG 187
++ + + + H+D ++L +G R+ C +L +++
Sbjct: 186 SSPKIRSHAVACVNQFIISRTQALXLHIDSFTENLFALAGDEEPEVRKNVCRALVXLLEV 245
Query: 188 RKFDQVGKHLRRIWTAAFRAMDDIKETV 215
R D++ H I + D E V
Sbjct: 246 R-MDRLLPHXHNIVEYXLQRTQDQDENV 272
>pdb|3GUG|A Chain A, Crystal Structure Of Akr1c1 L308v Mutant In Complex With
Nadp And 3,5-Dichlorosalicylic Acid
Length = 323
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE SL++ L+Y++L+ + + + E + G ++DT+DLC
Sbjct: 90 HRPELVRPALER--SLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLCAT 147
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E GL +GV++F + +++ K G+ KP
Sbjct: 148 WEAVEKC------------KDAGLAKSIGVSNFNRRQLEMILNKPGLKYKP 186
>pdb|1MRQ|A Chain A, Crystal Structure Of Human 20alpha-hsd In Ternary Complex
With Nadp And 20alpha-hydroxy-progesterone
Length = 323
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE SL++ L+Y++L+ + + + E + G ++DT+DLC
Sbjct: 90 HRPELVRPALER--SLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLCAT 147
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E GL +GV++F + +++ K G+ KP
Sbjct: 148 WEAVEKC------------KDAGLAKSIGVSNFNRRQLEMILNKPGLKYKP 186
>pdb|3C3U|A Chain A, Crystal Structure Of Akr1c1 In Complex With Nadp And 3,5-
Dichlorosalicylic Acid
pdb|3NTY|A Chain A, Crystal Structure Of Akr1c1 In Complex With Nadp And
5-Phenyl,3- Chlorosalicylic Acid
Length = 323
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE SL++ L+Y++L+ + + + E + G ++DT+DLC
Sbjct: 90 HRPELVRPALER--SLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLCAT 147
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E GL +GV++F + +++ K G+ KP
Sbjct: 148 WEAVEKC------------KDAGLAKSIGVSNFNRRQLEMILNKPGLKYKP 186
>pdb|1IHI|A Chain A, Crystal Structure Of Human Type Iii 3-Alpha-Hydroxysteroid
DehydrogenaseBILE ACID BINDING PROTEIN (AKR1C2)
COMPLEXED With Nadp+ And Ursodeoxycholate
pdb|1IHI|B Chain B, Crystal Structure Of Human Type Iii 3-Alpha-Hydroxysteroid
DehydrogenaseBILE ACID BINDING PROTEIN (AKR1C2)
COMPLEXED With Nadp+ And Ursodeoxycholate
pdb|2HDJ|A Chain A, Crystal Structure Of Human Type 3 3alpha-Hydroxysteroid
Dehydrogenase In Complex With Nadp(H)
pdb|2HDJ|B Chain B, Crystal Structure Of Human Type 3 3alpha-Hydroxysteroid
Dehydrogenase In Complex With Nadp(H)
Length = 323
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE SL++ L+Y++L+ + + + E + G ++DT+DLC
Sbjct: 90 HRPELVRPALER--SLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLC-- 145
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E++++ GL +GV++F + +++ K G+ KP
Sbjct: 146 -ATWEAMEKC---------KDAGLAKSIGVSNFNHRLLEMILNKPGLKYKP 186
>pdb|2IPJ|A Chain A, Crystal Structure Of H3alpha-Hydroxysteroid Dehydrogenase
Type 3 Mutant Y24a In Complex With Nadp+ And
Epi-Testosterone
pdb|2IPJ|B Chain B, Crystal Structure Of H3alpha-Hydroxysteroid Dehydrogenase
Type 3 Mutant Y24a In Complex With Nadp+ And
Epi-Testosterone
Length = 321
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE SL++ L+Y++L+ + + + E + G ++DT+DLC
Sbjct: 88 HRPELVRPALER--SLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLC-- 143
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E++++ GL +GV++F + +++ K G+ KP
Sbjct: 144 -ATWEAMEKC---------KDAGLAKSIGVSNFNHRLLEMILNKPGLKYKP 184
>pdb|1J96|A Chain A, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And
Testosterone
pdb|1J96|B Chain B, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And
Testosterone
Length = 323
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE SL++ L+Y++L+ + + + E + G ++DT+DLC
Sbjct: 90 HRPELVRPALER--SLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLC-- 145
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E++++ GL +GV++F + +++ K G+ KP
Sbjct: 146 -ATWEAMEKC---------KDAGLAKSIGVSNFNHRLLEMILNKPGLKYKP 186
>pdb|1XJB|A Chain A, Crystal Structure Of Human Type 3 3alpha-Hydroxysteroid
Dehydrogenase In Complex With Nadp(H), Citrate And
Acetate Molecules
pdb|1XJB|B Chain B, Crystal Structure Of Human Type 3 3alpha-Hydroxysteroid
Dehydrogenase In Complex With Nadp(H), Citrate And
Acetate Molecules
Length = 325
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348
H +LV LE SL++ L+Y++L+ + + + E + G ++DT+DLC
Sbjct: 92 HRPELVRPALER--SLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLC-- 147
Query: 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASF----ISLLVQKIGMDIKP 395
E++++ GL +GV++F + +++ K G+ KP
Sbjct: 148 -ATWEAMEKC---------KDAGLAKSIGVSNFNHRLLEMILNKPGLKYKP 188
>pdb|2ZL6|A Chain A, Atomic Resolution Structural Characterization Of
Recognition Of Histo- Blood Group Antigens By Norwalk
Virus
pdb|2ZL6|B Chain B, Atomic Resolution Structural Characterization Of
Recognition Of Histo- Blood Group Antigens By Norwalk
Virus
pdb|2ZL7|A Chain A, Atomic Resolution Structural Characterization Of
Recognition Of Histo-Blood Group Antigens By Norwalk
Virus
pdb|2ZL7|B Chain B, Atomic Resolution Structural Characterization Of
Recognition Of Histo-Blood Group Antigens By Norwalk
Virus
Length = 295
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 350 VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393
VDT + D VPHL + +GIG VGV S+IS G +
Sbjct: 121 VDT-TPDTFVPHLGSIQANGIGSGNYVGVLSWISPPSHPSGSQV 163
>pdb|2ZL5|A Chain A, Atomic Resolution Structural Characterization Of
Recognition Of Histo-Blood Group Antigen By Norwalk
Virus
pdb|2ZL5|B Chain B, Atomic Resolution Structural Characterization Of
Recognition Of Histo-Blood Group Antigen By Norwalk
Virus
Length = 295
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 350 VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393
VDT + D VPHL + +GIG VGV S+IS G +
Sbjct: 121 VDT-TPDTFVPHLGSIQANGIGSGNYVGVLSWISPPSHPSGSQV 163
>pdb|3BY2|A Chain A, Norwalk P Polypeptide (228-523)
Length = 305
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 350 VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393
VDT + D VPHL + +GIG VGV S+IS G +
Sbjct: 128 VDT-TPDTFVPHLGSIQANGIGSGNYVGVLSWISPPSHPSGSQV 170
>pdb|3D26|A Chain A, Norwalk P Domain A-Trisaccharide Complex
pdb|3D26|B Chain B, Norwalk P Domain A-Trisaccharide Complex
Length = 301
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 350 VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393
VDT + D VPHL + +GIG VGV S+IS G +
Sbjct: 116 VDT-TPDTFVPHLGSIQANGIGSGNYVGVLSWISPPSHPSGSQV 158
>pdb|3BY1|A Chain A, Unliganded Norvalk Virus P Domain
Length = 313
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 350 VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393
VDT + D VPHL + +GIG VGV S+IS G +
Sbjct: 128 VDT-TPDTFVPHLGSIQANGIGSGNYVGVLSWISPPSHPSGSQV 170
>pdb|1IHM|A Chain A, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|B Chain B, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|C Chain C, Crystal Structure Analysis Of Norwalk Virus Capsid
Length = 530
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 350 VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393
VDT + D VPHL + +GIG VGV S+IS G +
Sbjct: 345 VDT-TPDTFVPHLGSIQANGIGSGNYVGVLSWISPPSHPSGSQV 387
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 41/87 (47%)
Query: 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQ 133
DLI + + S+++ R + I++QAG + +L +IP +V+F D ++
Sbjct: 213 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 272
Query: 134 DAMAHIWKSLVADPKRTIDEHLDLIFD 160
+ ++S V + + H+ I +
Sbjct: 273 EYCIQAFESFVRRCPKEVYPHVSTIIN 299
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 41/87 (47%)
Query: 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQ 133
DLI + + S+++ R + I++QAG + +L +IP +V+F D ++
Sbjct: 236 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 295
Query: 134 DAMAHIWKSLVADPKRTIDEHLDLIFD 160
+ ++S V + + H+ I +
Sbjct: 296 EYCIQAFESFVRRCPKEVYPHVSTIIN 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,812,898
Number of Sequences: 62578
Number of extensions: 678551
Number of successful extensions: 1570
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1549
Number of HSP's gapped (non-prelim): 39
length of query: 742
length of database: 14,973,337
effective HSP length: 106
effective length of query: 636
effective length of database: 8,340,069
effective search space: 5304283884
effective search space used: 5304283884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)