Query 004614
Match_columns 742
No_of_seqs 406 out of 1235
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0915 Uncharacterized conser 100.0 5E-120 1E-124 1027.7 62.1 630 1-641 885-1517(1702)
2 KOG2171 Karyopherin (importin) 100.0 1.5E-32 3.3E-37 311.4 49.0 629 36-718 305-1022(1075)
3 KOG2023 Nuclear transport rece 100.0 2.3E-33 5E-38 298.3 37.7 612 3-654 50-798 (885)
4 KOG2023 Nuclear transport rece 100.0 1.6E-34 3.4E-39 307.1 21.6 486 152-697 9-528 (885)
5 KOG1241 Karyopherin (importin) 99.9 7E-25 1.5E-29 238.0 34.4 430 56-556 343-819 (859)
6 KOG1241 Karyopherin (importin) 99.9 1.2E-23 2.7E-28 228.4 42.3 433 152-655 359-837 (859)
7 KOG1824 TATA-binding protein-i 99.9 5.2E-24 1.1E-28 234.8 36.6 347 353-702 127-536 (1233)
8 KOG2171 Karyopherin (importin) 99.9 3.2E-21 7E-26 219.8 45.7 569 4-636 68-715 (1075)
9 COG5215 KAP95 Karyopherin (imp 99.9 2.8E-20 6E-25 195.9 32.9 432 56-559 345-821 (858)
10 COG5215 KAP95 Karyopherin (imp 99.9 8.4E-19 1.8E-23 184.8 41.9 538 42-654 178-834 (858)
11 KOG1242 Protein containing ada 99.8 2.6E-16 5.6E-21 170.5 31.3 473 57-583 38-558 (569)
12 KOG1824 TATA-binding protein-i 99.8 4.6E-14 9.9E-19 157.1 45.8 519 57-636 1-640 (1233)
13 KOG1242 Protein containing ada 99.7 3.1E-14 6.7E-19 154.5 36.0 489 118-657 19-549 (569)
14 KOG0213 Splicing factor 3b, su 99.7 1.3E-12 2.9E-17 142.0 46.0 526 58-638 495-1069(1172)
15 KOG0915 Uncharacterized conser 99.7 4.3E-13 9.2E-18 156.2 37.8 357 169-569 969-1365(1702)
16 KOG0212 Uncharacterized conser 99.6 7.7E-12 1.7E-16 133.1 32.2 444 161-651 4-461 (675)
17 COG5181 HSH155 U2 snRNP splice 99.5 1.1E-10 2.3E-15 125.2 39.4 536 59-652 301-888 (975)
18 PLN03200 cellulose synthase-in 99.5 7.6E-11 1.7E-15 145.9 43.6 536 75-657 190-794 (2102)
19 KOG0213 Splicing factor 3b, su 99.5 1.1E-10 2.4E-15 127.3 39.0 520 56-638 380-916 (1172)
20 KOG0212 Uncharacterized conser 99.5 8.8E-12 1.9E-16 132.7 28.7 420 88-551 13-447 (675)
21 KOG0211 Protein phosphatase 2A 99.5 1.2E-10 2.5E-15 133.4 34.3 498 56-658 99-610 (759)
22 PF01602 Adaptin_N: Adaptin N 99.4 4.6E-09 1E-13 120.7 46.5 469 114-633 40-523 (526)
23 PLN03200 cellulose synthase-in 99.4 5.9E-09 1.3E-13 129.6 45.3 468 117-637 363-863 (2102)
24 KOG0211 Protein phosphatase 2A 99.4 1.2E-09 2.6E-14 125.3 33.5 449 58-548 178-664 (759)
25 PF01602 Adaptin_N: Adaptin N 99.3 1.1E-08 2.5E-13 117.5 41.2 418 131-638 22-448 (526)
26 PTZ00429 beta-adaptin; Provisi 99.3 2.4E-07 5.2E-12 107.7 46.4 435 130-655 47-490 (746)
27 COG5181 HSH155 U2 snRNP splice 99.2 2.6E-08 5.7E-13 107.2 29.1 526 56-639 185-764 (975)
28 PRK13800 putative oxidoreducta 99.1 2.1E-08 4.4E-13 121.5 26.7 172 410-631 724-896 (897)
29 KOG1060 Vesicle coat complex A 99.1 1.1E-06 2.3E-11 97.9 36.1 454 127-657 47-514 (968)
30 PRK09687 putative lyase; Provi 99.0 4.8E-08 1.1E-12 101.6 24.1 242 88-425 36-278 (280)
31 PF12755 Vac14_Fab1_bd: Vacuol 99.0 3.2E-09 6.8E-14 91.1 10.5 72 149-221 19-90 (97)
32 PRK13800 putative oxidoreducta 99.0 1.1E-07 2.4E-12 115.1 27.3 273 158-585 622-895 (897)
33 KOG1943 Beta-tubulin folding c 99.0 3.9E-06 8.5E-11 96.7 37.4 455 82-637 292-790 (1133)
34 PTZ00429 beta-adaptin; Provisi 99.0 3.8E-05 8.2E-10 89.7 45.9 464 115-632 67-544 (746)
35 PF12755 Vac14_Fab1_bd: Vacuol 98.9 8E-09 1.7E-13 88.7 9.2 94 90-184 1-94 (97)
36 PRK09687 putative lyase; Provi 98.8 1.5E-07 3.3E-12 97.9 18.6 210 399-654 23-234 (280)
37 KOG1248 Uncharacterized conser 98.8 0.00028 6E-09 82.9 45.6 537 58-639 331-903 (1176)
38 KOG0166 Karyopherin (importin) 98.8 8.5E-07 1.9E-11 96.8 23.1 321 75-432 110-439 (514)
39 KOG1943 Beta-tubulin folding c 98.8 0.00019 4.2E-09 83.2 42.1 543 57-655 104-729 (1133)
40 PF10508 Proteasom_PSMB: Prote 98.7 4.7E-05 1E-09 86.4 33.8 398 121-587 43-463 (503)
41 PF12460 MMS19_C: RNAPII trans 98.7 7.2E-05 1.6E-09 83.0 34.3 387 118-567 1-413 (415)
42 PF10508 Proteasom_PSMB: Prote 98.6 0.00034 7.4E-09 79.4 38.2 421 56-548 18-462 (503)
43 KOG1991 Nuclear transport rece 98.6 8.7E-05 1.9E-09 85.4 32.5 402 108-628 339-794 (1010)
44 PF12460 MMS19_C: RNAPII trans 98.6 0.00014 3E-09 80.7 33.5 373 202-612 2-413 (415)
45 PF12348 CLASP_N: CLASP N term 98.6 9.2E-07 2E-11 89.8 14.9 183 449-638 19-210 (228)
46 KOG1248 Uncharacterized conser 98.6 0.00034 7.4E-09 82.2 36.3 213 377-593 673-902 (1176)
47 PF12348 CLASP_N: CLASP N term 98.6 1.5E-06 3.3E-11 88.3 15.4 190 83-284 15-210 (228)
48 KOG0166 Karyopherin (importin) 98.5 0.00014 2.9E-09 79.9 29.0 318 247-589 106-436 (514)
49 KOG1062 Vesicle coat complex A 98.4 0.00093 2E-08 75.5 33.4 387 158-636 108-497 (866)
50 KOG1020 Sister chromatid cohes 98.4 0.0034 7.4E-08 75.5 38.6 423 108-638 812-1258(1692)
51 KOG0392 SNF2 family DNA-depend 98.3 0.0052 1.1E-07 72.6 38.3 118 512-637 810-928 (1549)
52 KOG2274 Predicted importin 9 [ 98.3 0.015 3.3E-07 66.8 43.8 291 395-699 445-763 (1005)
53 KOG1060 Vesicle coat complex A 98.3 0.0032 7E-08 71.0 34.1 434 123-625 115-562 (968)
54 PF13513 HEAT_EZ: HEAT-like re 98.3 1.1E-06 2.4E-11 67.3 5.3 52 171-223 1-52 (55)
55 KOG1240 Protein kinase contain 98.3 4.1E-05 8.8E-10 89.3 19.1 286 355-655 420-746 (1431)
56 KOG1992 Nuclear export recepto 98.3 0.018 3.8E-07 65.7 38.5 465 75-592 38-580 (960)
57 KOG1059 Vesicle coat complex A 98.2 0.0036 7.8E-08 70.0 32.5 254 199-549 144-402 (877)
58 KOG1240 Protein kinase contain 98.2 6.7E-05 1.5E-09 87.5 20.0 144 405-552 583-729 (1431)
59 KOG2032 Uncharacterized conser 98.2 0.00014 3.1E-09 77.8 19.6 201 58-268 195-404 (533)
60 KOG1992 Nuclear export recepto 98.2 0.0017 3.6E-08 73.7 28.0 365 133-574 379-778 (960)
61 cd00020 ARM Armadillo/beta-cat 98.1 1.6E-05 3.5E-10 71.3 9.9 112 74-186 7-120 (120)
62 cd00020 ARM Armadillo/beta-cat 98.1 2.2E-05 4.8E-10 70.4 10.2 109 117-226 8-118 (120)
63 KOG4224 Armadillo repeat prote 98.1 0.0012 2.6E-08 68.1 22.6 425 126-636 58-495 (550)
64 KOG1991 Nuclear transport rece 98.0 0.055 1.2E-06 63.1 52.7 500 116-634 93-711 (1010)
65 KOG2956 CLIP-associating prote 98.0 0.00058 1.3E-08 72.8 19.1 161 124-303 295-459 (516)
66 KOG1058 Vesicle coat complex C 98.0 0.031 6.7E-07 63.1 32.7 354 200-637 100-466 (948)
67 KOG1061 Vesicle coat complex A 97.9 0.0026 5.6E-08 72.1 24.8 366 159-638 88-457 (734)
68 COG5240 SEC21 Vesicle coat com 97.9 0.059 1.3E-06 59.1 36.7 257 348-632 294-553 (898)
69 PF13513 HEAT_EZ: HEAT-like re 97.9 6.7E-06 1.5E-10 63.0 2.7 54 89-142 1-54 (55)
70 KOG1077 Vesicle coat complex A 97.9 0.072 1.6E-06 59.8 40.8 272 336-633 307-586 (938)
71 COG5064 SRP1 Karyopherin (impo 97.9 0.0006 1.3E-08 69.6 16.9 289 58-384 91-395 (526)
72 KOG0891 DNA-dependent protein 97.8 0.19 4.2E-06 65.4 40.7 125 506-632 635-761 (2341)
73 KOG2022 Nuclear transport rece 97.8 0.13 2.9E-06 59.3 49.7 340 264-638 480-871 (982)
74 KOG4224 Armadillo repeat prote 97.7 0.0083 1.8E-07 62.1 21.6 412 89-552 61-497 (550)
75 KOG1967 DNA repair/transcripti 97.7 0.00025 5.4E-09 81.0 11.4 128 94-221 886-1017(1030)
76 KOG0946 ER-Golgi vesicle-tethe 97.6 0.21 4.5E-06 57.1 40.3 200 74-281 22-242 (970)
77 PF13646 HEAT_2: HEAT repeats; 97.6 0.00027 5.8E-09 59.8 8.5 85 118-223 1-87 (88)
78 KOG1059 Vesicle coat complex A 97.6 0.18 3.9E-06 57.1 32.0 324 157-550 144-492 (877)
79 KOG4535 HEAT and armadillo rep 97.6 0.014 3.1E-07 62.5 22.5 278 372-652 269-581 (728)
80 KOG1820 Microtubule-associated 97.6 0.0013 2.7E-08 77.1 15.2 184 86-285 264-448 (815)
81 KOG2259 Uncharacterized conser 97.6 0.0064 1.4E-07 67.5 19.5 311 161-552 202-515 (823)
82 COG5098 Chromosome condensatio 97.5 0.077 1.7E-06 59.4 27.4 111 522-637 302-418 (1128)
83 KOG1820 Microtubule-associated 97.5 0.014 3E-07 68.6 22.7 197 353-593 249-447 (815)
84 KOG2956 CLIP-associating prote 97.5 0.0055 1.2E-07 65.7 17.1 210 74-301 286-499 (516)
85 COG5656 SXM1 Importin, protein 97.5 0.35 7.5E-06 55.0 35.3 407 87-611 311-776 (970)
86 KOG4653 Uncharacterized conser 97.4 0.0083 1.8E-07 68.5 19.0 211 372-587 741-962 (982)
87 KOG1020 Sister chromatid cohes 97.4 0.63 1.4E-05 57.0 44.3 121 89-219 830-951 (1692)
88 COG5096 Vesicle coat complex, 97.4 0.49 1.1E-05 55.2 39.2 152 126-309 29-183 (757)
89 PF02985 HEAT: HEAT repeat; I 97.4 0.00027 5.9E-09 46.9 4.0 30 158-187 1-30 (31)
90 COG5240 SEC21 Vesicle coat com 97.4 0.35 7.6E-06 53.4 34.3 246 398-655 263-537 (898)
91 KOG4535 HEAT and armadillo rep 97.4 0.31 6.8E-06 52.6 29.4 100 532-633 497-602 (728)
92 KOG0891 DNA-dependent protein 97.4 0.18 4E-06 65.6 31.7 388 124-569 537-941 (2341)
93 PF12717 Cnd1: non-SMC mitotic 97.4 0.0024 5.3E-08 62.0 12.2 109 91-206 4-112 (178)
94 PF12717 Cnd1: non-SMC mitotic 97.3 0.0036 7.8E-08 60.8 12.7 114 532-656 1-114 (178)
95 TIGR02270 conserved hypothetic 97.3 0.27 5.9E-06 54.1 28.4 268 89-466 17-296 (410)
96 KOG0413 Uncharacterized conser 97.3 0.16 3.5E-06 58.9 26.3 91 532-634 944-1035(1529)
97 PF05804 KAP: Kinesin-associat 97.2 0.23 5E-06 58.0 28.6 105 115-226 289-397 (708)
98 PF13646 HEAT_2: HEAT repeats; 97.2 0.0025 5.4E-08 53.7 9.6 85 522-630 2-88 (88)
99 PF03378 CAS_CSE1: CAS/CSE pro 97.2 0.16 3.4E-06 56.3 25.8 278 356-637 25-327 (435)
100 COG5064 SRP1 Karyopherin (impo 97.2 0.0021 4.5E-08 65.8 9.8 195 74-282 157-400 (526)
101 KOG1062 Vesicle coat complex A 97.2 0.75 1.6E-05 52.9 36.6 165 243-431 289-453 (866)
102 PF02985 HEAT: HEAT repeat; I 97.2 0.00062 1.3E-08 45.2 3.9 30 520-549 1-30 (31)
103 COG5218 YCG1 Chromosome conden 97.1 0.21 4.7E-06 55.1 24.5 152 108-275 41-194 (885)
104 KOG2032 Uncharacterized conser 97.1 0.053 1.2E-06 58.7 19.4 139 515-656 254-400 (533)
105 KOG2025 Chromosome condensatio 97.0 0.39 8.5E-06 54.4 25.4 155 60-222 22-187 (892)
106 KOG1525 Sister chromatid cohes 97.0 1.1 2.3E-05 55.6 31.5 274 373-656 196-474 (1266)
107 PF12719 Cnd3: Nuclear condens 97.0 0.22 4.8E-06 52.6 23.3 138 348-487 55-206 (298)
108 KOG1061 Vesicle coat complex A 96.9 0.15 3.3E-06 58.2 21.9 391 115-540 120-520 (734)
109 COG1413 FOG: HEAT repeat [Ener 96.9 0.17 3.8E-06 54.4 22.1 173 74-307 43-228 (335)
110 KOG1078 Vesicle coat complex C 96.9 1.3 2.9E-05 50.8 35.3 436 125-636 73-534 (865)
111 KOG1058 Vesicle coat complex C 96.9 0.87 1.9E-05 52.0 27.0 64 152-219 129-192 (948)
112 KOG2259 Uncharacterized conser 96.9 0.048 1E-06 60.9 17.1 240 370-631 210-472 (823)
113 KOG2274 Predicted importin 9 [ 96.8 1.5 3.4E-05 51.1 47.2 270 356-633 489-779 (1005)
114 PF10274 ParcG: Parkin co-regu 96.7 0.02 4.3E-07 54.8 11.4 113 477-592 37-167 (183)
115 KOG1967 DNA repair/transcripti 96.6 2.2 4.8E-05 50.0 39.8 156 473-631 862-1021(1030)
116 COG1413 FOG: HEAT repeat [Ener 96.6 0.38 8.3E-06 51.7 22.3 215 357-630 43-269 (335)
117 PF14500 MMS19_N: Dos2-interac 96.5 0.39 8.5E-06 49.5 20.3 54 514-567 203-257 (262)
118 PF08167 RIX1: rRNA processing 96.5 0.077 1.7E-06 50.7 14.0 142 154-301 22-164 (165)
119 TIGR02270 conserved hypothetic 96.4 0.38 8.2E-06 52.9 20.9 117 401-546 88-205 (410)
120 KOG4653 Uncharacterized conser 96.4 0.29 6.3E-06 56.5 20.2 223 157-424 727-959 (982)
121 PF05004 IFRD: Interferon-rela 96.4 0.55 1.2E-05 49.8 21.5 214 153-432 39-260 (309)
122 PF10274 ParcG: Parkin co-regu 96.4 0.026 5.7E-07 54.0 10.0 92 516-611 35-130 (183)
123 PF05004 IFRD: Interferon-rela 96.3 0.54 1.2E-05 49.8 20.8 185 89-283 57-260 (309)
124 PF08167 RIX1: rRNA processing 96.3 0.081 1.7E-06 50.6 12.9 114 111-226 20-141 (165)
125 KOG2062 26S proteasome regulat 96.2 0.18 3.9E-06 57.1 16.7 137 74-224 484-649 (929)
126 KOG1525 Sister chromatid cohes 96.2 5.5 0.00012 49.6 30.3 167 455-635 240-406 (1266)
127 KOG2933 Uncharacterized conser 96.1 0.08 1.7E-06 54.2 12.5 167 117-301 75-257 (334)
128 KOG1078 Vesicle coat complex C 96.1 3.9 8.4E-05 47.3 29.1 288 196-549 242-533 (865)
129 COG5116 RPN2 26S proteasome re 96.1 0.16 3.4E-06 55.9 14.9 168 36-225 461-647 (926)
130 PF04826 Arm_2: Armadillo-like 96.0 0.67 1.5E-05 47.5 19.0 147 74-227 12-162 (254)
131 KOG2025 Chromosome condensatio 95.9 4.5 9.7E-05 46.3 36.8 109 152-275 80-188 (892)
132 PF08506 Cse1: Cse1; InterPro 95.9 2.1 4.6E-05 46.5 22.9 203 454-656 113-359 (370)
133 PF05804 KAP: Kinesin-associat 95.8 3.4 7.4E-05 48.5 25.8 313 116-483 331-674 (708)
134 COG5656 SXM1 Importin, protein 95.8 5 0.00011 46.1 37.8 344 108-483 404-775 (970)
135 PF13251 DUF4042: Domain of un 95.7 0.17 3.6E-06 48.9 12.3 135 92-226 3-172 (182)
136 PF11865 DUF3385: Domain of un 95.7 0.13 2.7E-06 48.9 11.4 127 355-500 8-150 (160)
137 PF03378 CAS_CSE1: CAS/CSE pro 95.7 0.54 1.2E-05 52.2 17.9 232 391-637 18-275 (435)
138 KOG2149 Uncharacterized conser 95.7 0.11 2.3E-06 55.3 11.6 113 113-229 59-171 (393)
139 KOG2160 Armadillo/beta-catenin 95.6 1.3 2.8E-05 46.7 19.1 131 85-215 93-225 (342)
140 KOG1993 Nuclear transport rece 95.6 6 0.00013 45.8 36.0 174 116-301 488-665 (978)
141 PF04118 Dopey_N: Dopey, N-ter 95.6 2.4 5.1E-05 44.7 21.1 156 472-637 91-254 (307)
142 PF05918 API5: Apoptosis inhib 95.5 0.75 1.6E-05 52.0 18.1 120 372-502 36-157 (556)
143 PF13251 DUF4042: Domain of un 95.5 0.14 3E-06 49.4 10.8 142 131-282 1-176 (182)
144 KOG0889 Histone acetyltransfer 95.5 1.3 2.7E-05 59.0 21.9 180 116-301 984-1172(3550)
145 PF14500 MMS19_N: Dos2-interac 95.5 3.6 7.9E-05 42.4 22.5 131 161-304 3-135 (262)
146 COG5096 Vesicle coat complex, 95.5 7.3 0.00016 45.8 35.5 100 117-226 93-193 (757)
147 KOG0392 SNF2 family DNA-depend 95.4 0.053 1.1E-06 64.6 9.0 122 102-228 803-925 (1549)
148 KOG4413 26S proteasome regulat 95.3 4.2 9.1E-05 42.2 27.7 97 129-227 53-156 (524)
149 COG5116 RPN2 26S proteasome re 95.3 0.058 1.2E-06 59.1 8.0 144 56-213 530-676 (926)
150 KOG2022 Nuclear transport rece 95.1 9.4 0.0002 44.9 42.0 113 171-302 481-598 (982)
151 PF11865 DUF3385: Domain of un 95.0 0.3 6.4E-06 46.4 11.2 72 518-589 85-157 (160)
152 KOG2137 Protein kinase [Signal 95.0 0.86 1.9E-05 52.1 16.4 119 151-284 343-462 (700)
153 cd08050 TAF6 TATA Binding Prot 95.0 0.78 1.7E-05 49.4 15.7 88 500-587 239-338 (343)
154 KOG0414 Chromosome condensatio 94.9 0.26 5.7E-06 58.8 12.7 158 113-296 916-1079(1251)
155 PF12719 Cnd3: Nuclear condens 94.8 2.9 6.4E-05 44.1 19.6 104 116-223 26-138 (298)
156 PF10521 DUF2454: Protein of u 94.7 1.3 2.8E-05 46.4 16.2 164 137-304 99-277 (282)
157 KOG0567 HEAT repeat-containing 94.7 0.97 2.1E-05 45.5 14.1 94 518-635 186-281 (289)
158 KOG0168 Putative ubiquitin fus 94.5 11 0.00023 44.3 23.5 184 113-313 168-356 (1051)
159 cd08050 TAF6 TATA Binding Prot 94.5 0.11 2.5E-06 55.8 7.9 101 111-212 205-322 (343)
160 PF08506 Cse1: Cse1; InterPro 94.4 3.5 7.6E-05 44.8 19.1 92 530-629 266-370 (370)
161 PF08623 TIP120: TATA-binding 94.2 0.7 1.5E-05 43.9 11.6 123 513-638 3-151 (169)
162 KOG2149 Uncharacterized conser 94.2 0.43 9.4E-06 50.9 11.2 135 157-302 58-192 (393)
163 PF04826 Arm_2: Armadillo-like 94.0 0.95 2.1E-05 46.4 13.0 149 117-281 13-164 (254)
164 KOG0168 Putative ubiquitin fus 93.9 17 0.00036 42.7 29.1 79 553-638 548-633 (1051)
165 KOG2062 26S proteasome regulat 93.8 0.18 3.8E-06 57.2 7.7 129 73-215 553-681 (929)
166 KOG1848 Uncharacterized conser 93.6 24 0.00053 43.7 27.6 293 247-592 838-1189(1610)
167 KOG0414 Chromosome condensatio 93.6 23 0.0005 43.2 41.8 124 63-190 299-432 (1251)
168 KOG2021 Nuclear mRNA export fa 93.5 18 0.0004 41.9 44.2 296 356-658 334-749 (980)
169 KOG1993 Nuclear transport rece 93.3 20 0.00044 41.8 35.4 354 172-569 412-790 (978)
170 PF08623 TIP120: TATA-binding 93.1 0.22 4.8E-06 47.2 6.2 96 193-302 3-116 (169)
171 smart00638 LPD_N Lipoprotein N 92.8 4.2 9E-05 47.4 17.7 153 128-313 409-570 (574)
172 KOG2549 Transcription initiati 92.8 7.1 0.00015 43.5 17.7 86 504-589 273-370 (576)
173 KOG2137 Protein kinase [Signal 92.7 10 0.00022 43.8 19.4 113 515-636 385-498 (700)
174 KOG1851 Uncharacterized conser 92.5 37 0.0008 42.8 26.0 138 349-492 1518-1662(1710)
175 PF12074 DUF3554: Domain of un 92.5 12 0.00026 40.2 19.6 50 397-447 59-112 (339)
176 PF07571 DUF1546: Protein of u 92.3 0.57 1.2E-05 39.9 7.1 59 530-588 17-77 (92)
177 PF13001 Ecm29: Proteasome sta 92.0 26 0.00057 39.9 22.4 118 516-638 316-447 (501)
178 PF08064 UME: UME (NUC010) dom 91.9 2.1 4.5E-05 37.6 10.4 98 109-208 4-105 (107)
179 PF10521 DUF2454: Protein of u 91.6 17 0.00038 37.9 18.9 110 169-282 87-205 (282)
180 KOG2933 Uncharacterized conser 91.5 3.5 7.6E-05 42.6 12.7 125 88-219 101-225 (334)
181 PF08767 CRM1_C: CRM1 C termin 91.5 1.9 4.1E-05 46.0 11.6 124 89-212 85-227 (319)
182 COG5218 YCG1 Chromosome conden 91.4 17 0.00037 40.9 18.6 107 514-628 86-193 (885)
183 KOG2160 Armadillo/beta-catenin 91.2 3.5 7.7E-05 43.5 12.8 114 522-638 127-244 (342)
184 KOG1293 Proteins containing ar 91.1 3.7 8E-05 46.5 13.4 109 120-228 423-533 (678)
185 KOG1949 Uncharacterized conser 90.8 13 0.00029 42.6 17.3 187 74-279 129-330 (1005)
186 KOG2549 Transcription initiati 90.7 6 0.00013 44.1 14.4 151 62-212 227-396 (576)
187 PF08064 UME: UME (NUC010) dom 90.7 2.4 5.2E-05 37.2 9.6 77 515-593 7-87 (107)
188 KOG0413 Uncharacterized conser 90.6 44 0.00096 40.0 32.9 123 519-653 968-1092(1529)
189 KOG0946 ER-Golgi vesicle-tethe 90.6 27 0.00058 40.8 19.7 202 518-737 121-344 (970)
190 KOG1949 Uncharacterized conser 90.2 16 0.00035 42.0 17.3 150 480-635 176-332 (1005)
191 smart00802 UME Domain in UVSB 90.2 3 6.5E-05 36.5 9.6 99 108-208 3-105 (107)
192 KOG1243 Protein kinase [Genera 90.1 4.2 9E-05 46.6 13.0 196 346-550 318-517 (690)
193 PF13001 Ecm29: Proteasome sta 90.0 40 0.00086 38.5 29.9 224 395-631 234-485 (501)
194 PF01347 Vitellogenin_N: Lipop 89.8 2.9 6.4E-05 49.1 12.5 150 128-313 447-614 (618)
195 KOG1243 Protein kinase [Genera 89.8 4.3 9.3E-05 46.5 12.7 135 412-553 266-403 (690)
196 KOG2081 Nuclear transport regu 89.4 41 0.0009 37.8 26.5 130 513-652 334-476 (559)
197 KOG1293 Proteins containing ar 89.4 7.5 0.00016 44.2 14.0 120 65-188 410-535 (678)
198 PF08161 NUC173: NUC173 domain 89.1 7.3 0.00016 38.3 12.6 165 377-546 19-197 (198)
199 smart00802 UME Domain in UVSB 88.9 2.2 4.8E-05 37.4 7.8 74 573-652 28-101 (107)
200 KOG1822 Uncharacterized conser 88.6 8.1 0.00018 49.1 14.8 186 403-591 55-250 (2067)
201 PF01347 Vitellogenin_N: Lipop 88.4 26 0.00057 41.1 19.1 96 513-629 484-584 (618)
202 PF05918 API5: Apoptosis inhib 87.8 56 0.0012 37.3 27.8 103 162-284 64-166 (556)
203 COG5095 TAF6 Transcription ini 87.5 18 0.00038 37.3 14.0 84 505-588 263-358 (450)
204 KOG0889 Histone acetyltransfer 87.5 1.4E+02 0.003 41.4 36.1 164 514-697 1028-1202(3550)
205 PF14868 DUF4487: Domain of un 87.2 62 0.0013 37.2 24.7 91 343-433 465-556 (559)
206 KOG1048 Neural adherens juncti 87.0 70 0.0015 37.5 25.0 108 118-228 235-349 (717)
207 KOG2081 Nuclear transport regu 87.0 21 0.00045 40.1 15.4 216 56-295 260-510 (559)
208 PF08569 Mo25: Mo25-like; Int 86.9 48 0.001 35.6 25.9 205 396-613 73-298 (335)
209 KOG2973 Uncharacterized conser 86.9 43 0.00092 35.0 22.2 107 159-280 5-111 (353)
210 KOG1848 Uncharacterized conser 86.6 86 0.0019 39.3 21.1 115 522-636 1000-1134(1610)
211 KOG2021 Nuclear mRNA export fa 86.3 75 0.0016 37.2 33.5 393 75-485 336-783 (980)
212 PF10363 DUF2435: Protein of u 86.2 4.9 0.00011 34.2 8.2 71 118-189 5-75 (92)
213 PLN03076 ARF guanine nucleotid 86.0 1.3E+02 0.0028 39.7 36.5 45 512-556 1453-1497(1780)
214 KOG1810 Cell cycle-associated 85.3 49 0.0011 40.9 18.3 222 54-281 708-967 (1417)
215 KOG1517 Guanine nucleotide bin 84.8 11 0.00024 45.2 12.5 134 90-226 572-730 (1387)
216 COG5095 TAF6 Transcription ini 84.4 11 0.00024 38.8 10.8 136 150-303 194-339 (450)
217 PF00790 VHS: VHS domain; Int 84.4 9 0.0002 35.4 9.9 121 522-652 12-136 (140)
218 smart00638 LPD_N Lipoprotein N 84.3 27 0.00059 40.6 16.2 96 169-285 409-514 (574)
219 KOG0567 HEAT repeat-containing 84.2 52 0.0011 33.6 16.1 58 69-136 62-120 (289)
220 PF10363 DUF2435: Protein of u 84.2 14 0.00031 31.4 10.1 69 158-228 4-72 (92)
221 PF12054 DUF3535: Domain of un 83.9 69 0.0015 35.8 18.2 38 395-432 308-345 (441)
222 KOG1517 Guanine nucleotide bin 83.6 6.2 0.00014 47.1 9.9 153 479-636 513-673 (1387)
223 PF08713 DNA_alkylation: DNA a 83.5 4.2 9E-05 40.4 7.8 78 115-199 119-196 (213)
224 PLN03076 ARF guanine nucleotid 83.1 1.7E+02 0.0037 38.7 29.8 272 356-638 1181-1493(1780)
225 PF12530 DUF3730: Protein of u 83.1 56 0.0012 33.1 19.3 202 404-618 5-216 (234)
226 PF10350 DUF2428: Putative dea 83.0 11 0.00023 38.9 10.7 98 75-172 143-255 (255)
227 PF08569 Mo25: Mo25-like; Int 82.1 77 0.0017 34.0 19.9 203 63-283 65-286 (335)
228 PF08767 CRM1_C: CRM1 C termin 81.7 77 0.0017 33.8 21.2 145 132-284 43-198 (319)
229 PF12783 Sec7_N: Guanine nucle 81.2 14 0.00031 35.1 10.3 125 58-187 10-147 (168)
230 PF00514 Arm: Armadillo/beta-c 81.0 3.1 6.7E-05 29.2 4.1 28 158-185 13-40 (41)
231 KOG2973 Uncharacterized conser 80.4 12 0.00026 38.8 9.6 63 123-187 10-72 (353)
232 cd03568 VHS_STAM VHS domain fa 80.0 29 0.00063 32.2 11.4 121 526-656 11-132 (144)
233 PF12765 Cohesin_HEAT: HEAT re 79.7 2.9 6.2E-05 29.8 3.6 40 98-139 2-41 (42)
234 cd06561 AlkD_like A new struct 78.7 28 0.0006 33.9 11.7 76 119-200 108-183 (197)
235 cd03569 VHS_Hrs_Vps27p VHS dom 78.2 29 0.00062 32.2 10.7 118 526-654 15-134 (142)
236 KOG4413 26S proteasome regulat 77.2 28 0.00061 36.4 11.0 183 450-638 53-247 (524)
237 PF08161 NUC173: NUC173 domain 77.1 23 0.0005 34.8 10.3 103 97-206 22-124 (198)
238 PF01603 B56: Protein phosphat 76.1 1.1E+02 0.0024 33.8 16.6 93 179-280 277-370 (409)
239 KOG4524 Uncharacterized conser 75.7 1.9E+02 0.0042 35.0 25.3 115 93-212 566-687 (1014)
240 PF08389 Xpo1: Exportin 1-like 75.6 23 0.00049 32.5 9.6 115 61-181 10-148 (148)
241 KOG1077 Vesicle coat complex A 75.5 1.7E+02 0.0037 34.2 34.8 104 97-206 130-235 (938)
242 KOG3961 Uncharacterized conser 75.2 6 0.00013 38.6 5.4 85 477-565 113-204 (262)
243 KOG3961 Uncharacterized conser 75.2 6.9 0.00015 38.2 5.8 92 519-611 114-205 (262)
244 cd03572 ENTH_epsin_related ENT 74.8 44 0.00096 30.0 10.5 72 154-226 35-117 (122)
245 KOG2213 Apoptosis inhibitor 5/ 74.0 1.4E+02 0.0029 32.4 19.1 54 371-429 37-90 (460)
246 PF12333 Ipi1_N: Rix1 complex 73.9 26 0.00056 30.4 8.7 60 510-569 2-62 (102)
247 PF04078 Rcd1: Cell differenti 73.4 60 0.0013 33.2 12.2 233 3-275 2-257 (262)
248 PF05536 Neurochondrin: Neuroc 73.2 1.3E+02 0.0028 34.7 16.6 178 457-638 77-265 (543)
249 KOG1822 Uncharacterized conser 71.7 3.3E+02 0.007 35.8 27.1 218 174-421 801-1024(2067)
250 PF05536 Neurochondrin: Neuroc 71.4 96 0.0021 35.8 15.0 142 494-637 73-216 (543)
251 PF12726 SEN1_N: SEN1 N termin 69.5 2.6E+02 0.0056 33.7 37.9 96 115-211 119-226 (727)
252 KOG2199 Signal transducing ada 68.7 70 0.0015 34.4 11.8 130 516-655 9-139 (462)
253 COG5098 Chromosome condensatio 68.1 2.3E+02 0.0051 33.0 16.3 92 531-634 908-1000(1128)
254 PF12054 DUF3535: Domain of un 67.9 2.1E+02 0.0045 32.1 18.3 52 417-468 104-157 (441)
255 cd03561 VHS VHS domain family; 67.7 47 0.001 30.2 9.5 104 527-639 12-117 (133)
256 KOG1566 Conserved protein Mo25 67.0 1.7E+02 0.0037 30.7 14.4 165 60-226 65-284 (342)
257 PF12333 Ipi1_N: Rix1 complex 66.3 26 0.00057 30.4 7.1 62 148-209 2-63 (102)
258 PF01851 PC_rep: Proteasome/cy 65.8 5.7 0.00012 27.0 2.3 35 94-134 1-35 (35)
259 PF00514 Arm: Armadillo/beta-c 65.4 11 0.00025 26.2 3.9 28 606-633 13-40 (41)
260 smart00185 ARM Armadillo/beta- 62.9 12 0.00026 25.7 3.6 28 158-185 13-40 (41)
261 cd03561 VHS VHS domain family; 62.9 64 0.0014 29.4 9.4 62 126-187 47-113 (133)
262 PF11698 V-ATPase_H_C: V-ATPas 62.5 31 0.00067 30.8 6.8 67 157-225 43-112 (119)
263 smart00567 EZ_HEAT E-Z type HE 61.0 9 0.00019 24.7 2.5 28 533-570 1-28 (30)
264 PF12765 Cohesin_HEAT: HEAT re 60.8 13 0.00028 26.4 3.4 41 542-584 2-42 (42)
265 KOG4524 Uncharacterized conser 60.0 3.9E+02 0.0085 32.5 34.3 81 516-596 800-883 (1014)
266 PF12530 DUF3730: Protein of u 57.0 2.2E+02 0.0048 28.7 18.0 95 529-638 94-189 (234)
267 PF14225 MOR2-PAG1_C: Cell mor 56.8 2.4E+02 0.0052 29.1 16.1 184 354-552 61-258 (262)
268 PF03224 V-ATPase_H_N: V-ATPas 56.8 1.3E+02 0.0028 31.9 11.9 73 73-146 104-180 (312)
269 PF11841 DUF3361: Domain of un 55.5 1.5E+02 0.0033 28.0 10.5 63 129-191 73-136 (160)
270 PF12397 U3snoRNP10: U3 small 55.1 64 0.0014 28.7 7.9 75 111-188 1-76 (121)
271 KOG0803 Predicted E3 ubiquitin 54.7 5.7E+02 0.012 32.8 20.3 192 401-593 43-267 (1312)
272 PF08146 BP28CT: BP28CT (NUC21 54.3 1.4E+02 0.0031 27.9 10.3 69 341-409 43-118 (153)
273 PF11919 DUF3437: Domain of un 54.3 29 0.00064 29.3 5.1 53 172-226 4-56 (90)
274 PF11864 DUF3384: Domain of un 53.8 3.7E+02 0.008 30.3 35.6 243 172-443 5-259 (464)
275 KOG0803 Predicted E3 ubiquitin 53.8 1.4E+02 0.003 38.0 12.6 110 155-275 39-148 (1312)
276 PF07571 DUF1546: Protein of u 53.6 56 0.0012 27.7 6.8 43 168-213 17-61 (92)
277 PF11919 DUF3437: Domain of un 53.4 31 0.00066 29.2 5.0 56 534-590 4-59 (90)
278 PF12074 DUF3554: Domain of un 53.3 3.1E+02 0.0068 29.3 19.4 80 209-302 33-113 (339)
279 PF11698 V-ATPase_H_C: V-ATPas 52.3 42 0.00091 30.0 5.9 69 358-428 44-114 (119)
280 cd03568 VHS_STAM VHS domain fa 51.2 2.1E+02 0.0044 26.6 10.8 75 518-592 36-113 (144)
281 PF00790 VHS: VHS domain; Int 51.0 1.2E+02 0.0027 27.7 9.3 77 516-592 39-121 (140)
282 KOG3036 Protein involved in ce 50.3 2.6E+02 0.0057 28.4 11.5 122 127-256 136-263 (293)
283 PF14225 MOR2-PAG1_C: Cell mor 49.4 3.2E+02 0.0069 28.2 21.5 189 386-588 50-256 (262)
284 PF12830 Nipped-B_C: Sister ch 49.0 1E+02 0.0022 29.9 8.8 70 116-189 8-77 (187)
285 PF12397 U3snoRNP10: U3 small 48.4 1.1E+02 0.0024 27.2 8.3 71 557-636 3-76 (121)
286 PF04510 DUF577: Family of unk 46.6 1.3E+02 0.0029 28.7 8.6 99 537-635 60-165 (174)
287 PF14631 FancD2: Fanconi anaem 46.5 8E+02 0.017 32.1 29.0 168 381-551 417-586 (1426)
288 cd03567 VHS_GGA VHS domain fam 46.3 2.4E+02 0.0052 26.0 11.2 105 526-638 12-120 (139)
289 cd05394 RasGAP_RASA2 RASA2 (or 46.3 1.4E+02 0.0031 31.5 9.7 41 617-657 69-111 (313)
290 smart00288 VHS Domain present 46.1 2E+02 0.0044 26.1 9.8 103 527-639 12-116 (133)
291 smart00288 VHS Domain present 44.9 1.7E+02 0.0037 26.6 9.1 75 518-592 36-114 (133)
292 cd00197 VHS_ENTH_ANTH VHS, ENT 44.4 1.5E+02 0.0032 26.1 8.4 71 154-225 34-112 (115)
293 cd00197 VHS_ENTH_ANTH VHS, ENT 44.2 1.8E+02 0.0038 25.6 8.9 71 516-586 34-112 (115)
294 PF12783 Sec7_N: Guanine nucle 43.7 1.1E+02 0.0025 28.9 8.1 72 518-589 72-146 (168)
295 PF01417 ENTH: ENTH domain; I 43.5 1.2E+02 0.0027 27.1 7.9 72 153-225 35-118 (125)
296 KOG2122 Beta-catenin-binding p 43.3 8.6E+02 0.019 31.5 19.7 71 560-636 530-603 (2195)
297 COG5101 CRM1 Importin beta-rel 43.2 5.9E+02 0.013 29.6 33.3 140 161-312 485-639 (1053)
298 PF08389 Xpo1: Exportin 1-like 43.2 1.7E+02 0.0036 26.5 9.1 115 534-653 3-135 (148)
299 PF10350 DUF2428: Putative dea 43.1 2E+02 0.0044 29.5 10.3 114 96-210 118-251 (255)
300 PF11701 UNC45-central: Myosin 41.8 2.6E+02 0.0056 26.2 10.1 130 413-544 18-155 (157)
301 PF14631 FancD2: Fanconi anaem 41.3 9.5E+02 0.021 31.4 27.4 165 464-637 421-586 (1426)
302 smart00185 ARM Armadillo/beta- 41.2 37 0.00079 23.1 3.2 28 520-547 13-40 (41)
303 PF03224 V-ATPase_H_N: V-ATPas 41.1 78 0.0017 33.5 7.2 119 515-635 55-180 (312)
304 KOG1810 Cell cycle-associated 38.6 9.3E+02 0.02 30.5 17.1 133 497-635 809-967 (1417)
305 PF09324 DUF1981: Domain of un 36.8 1.1E+02 0.0024 25.5 5.9 66 479-544 19-84 (86)
306 PF09324 DUF1981: Domain of un 36.1 1.4E+02 0.0029 25.0 6.4 57 117-173 19-75 (86)
307 cd03569 VHS_Hrs_Vps27p VHS dom 34.6 3E+02 0.0064 25.4 9.0 76 517-592 39-117 (142)
308 PF12830 Nipped-B_C: Sister ch 34.6 2.2E+02 0.0047 27.6 8.6 67 150-227 5-73 (187)
309 cd03567 VHS_GGA VHS domain fam 34.6 3.2E+02 0.0069 25.2 9.1 74 519-592 38-119 (139)
310 KOG2011 Sister chromatid cohes 32.5 1.1E+03 0.023 29.5 16.1 123 94-224 264-395 (1048)
311 PF04388 Hamartin: Hamartin pr 32.1 1.9E+02 0.0042 34.2 9.1 95 111-208 65-161 (668)
312 PF14664 RICTOR_N: Rapamycin-i 31.8 7.1E+02 0.015 27.2 22.2 348 178-634 4-364 (371)
313 PF13764 E3_UbLigase_R4: E3 ub 31.3 1E+03 0.022 28.9 19.0 76 114-189 165-261 (802)
314 cd03565 VHS_Tom1 VHS domain fa 30.8 3.1E+02 0.0067 25.3 8.5 103 526-639 12-120 (141)
315 COG5543 Uncharacterized conser 30.8 1.1E+03 0.023 28.9 16.0 92 497-590 795-911 (1400)
316 cd05134 RasGAP_RASA3 RASA3 (or 29.7 1.2E+02 0.0026 32.1 6.1 42 616-657 68-111 (310)
317 KOG1087 Cytosolic sorting prot 29.6 5.2E+02 0.011 29.1 11.3 104 525-638 11-116 (470)
318 PF03130 HEAT_PBS: PBS lyase H 28.8 56 0.0012 20.5 2.2 13 173-185 1-13 (27)
319 PF14676 FANCI_S2: FANCI solen 28.1 2.1E+02 0.0046 27.0 6.9 81 540-629 76-156 (158)
320 KOG4199 Uncharacterized conser 27.9 7.8E+02 0.017 26.4 13.7 160 61-228 273-444 (461)
321 cd03562 CID CID (CTD-Interacti 27.8 2.3E+02 0.005 24.7 6.9 69 515-583 33-102 (114)
322 cd07064 AlkD_like_1 A new stru 27.5 6.1E+02 0.013 25.0 12.4 78 116-200 115-192 (208)
323 KOG4346 Uncharacterized conser 27.3 1.1E+03 0.024 27.9 13.6 80 356-436 507-587 (849)
324 PF14764 SPG48: AP-5 complex s 27.2 9.2E+02 0.02 27.0 13.4 173 359-548 217-414 (459)
325 PF12612 TFCD_C: Tubulin foldi 27.1 5.9E+02 0.013 24.7 10.9 92 533-635 21-117 (193)
326 PF04118 Dopey_N: Dopey, N-ter 26.7 7.8E+02 0.017 26.0 22.3 222 154-421 8-246 (307)
327 KOG2122 Beta-catenin-binding p 25.7 1.6E+03 0.035 29.3 15.7 50 605-654 530-582 (2195)
328 cd03572 ENTH_epsin_related ENT 24.5 5.2E+02 0.011 23.2 9.0 75 353-428 34-118 (122)
329 PF06685 DUF1186: Protein of u 24.1 2E+02 0.0042 29.5 6.3 38 126-163 123-163 (249)
330 PF04388 Hamartin: Hamartin pr 23.9 1.3E+03 0.027 27.5 15.0 95 437-535 69-165 (668)
331 PF07539 DRIM: Down-regulated 23.5 4.8E+02 0.01 24.1 8.2 75 121-208 22-97 (141)
332 cd03565 VHS_Tom1 VHS domain fa 23.3 5.1E+02 0.011 23.8 8.4 62 125-186 48-115 (141)
333 PF08158 NUC130_3NT: NUC130/3N 22.5 52 0.0011 24.7 1.4 43 384-427 4-46 (52)
334 COG5221 DOP1 Dopey and related 21.5 6.7E+02 0.014 31.1 10.5 137 492-638 119-258 (1618)
335 PF08713 DNA_alkylation: DNA a 20.9 2.5E+02 0.0055 27.4 6.5 45 113-157 152-196 (213)
336 PF00613 PI3Ka: Phosphoinositi 20.3 2.1E+02 0.0046 27.7 5.5 75 114-204 43-120 (184)
337 PF08146 BP28CT: BP28CT (NUC21 20.3 7.1E+02 0.015 23.2 9.5 94 535-632 37-145 (153)
338 cd06561 AlkD_like A new struct 20.2 7.6E+02 0.017 23.6 12.7 62 160-227 108-169 (197)
No 1
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.8e-120 Score=1027.69 Aligned_cols=630 Identities=45% Similarity=0.786 Sum_probs=591.6
Q ss_pred CcceeecCChhHHHHHHHHHHHHhccCCccccccccCCCcccccCCcccCCCCCCCcchHHHHHHHhhhcCChhHHHHHH
Q 004614 1 MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFM 80 (742)
Q Consensus 1 l~~~y~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~~f~~g~~~~~~~~~~~~tyk~l~~lA~~~~~p~lv~~fm 80 (742)
||||||+||.++|++||++||+|||||+++ +++|++|||||++|+||+||+||++|||||||+||+++||||||||||
T Consensus 885 lglVYelgd~~~k~~LV~sL~~tl~~Gkr~--~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM 962 (1702)
T KOG0915|consen 885 LGLVYELGDSSLKKSLVDSLVNTLTGGKRK--AIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFM 962 (1702)
T ss_pred ceEEEecCCchhHHHHHHHHHHHHhccccc--cceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHH
Confidence 799999999999999999999999996544 689999999999999999999999999999999999999999999999
Q ss_pred HHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 004614 81 DLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFD 160 (742)
Q Consensus 81 ~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~ 160 (742)
+||+|++.||||+||||||++|++++++.++||++++||+||||+|||++.||+||.+||++|+.|++.++++|+.+|++
T Consensus 963 ~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~ 1042 (1702)
T KOG0915|consen 963 QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILD 1042 (1702)
T ss_pred HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCc
Q 004614 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (742)
Q Consensus 161 ~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~ 240 (742)
+|+.++++++|||||+||.|+.||++|++.+++..+++++|.++||+|||+|++||+||.++++.++++|+|.|++.+
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~-- 1120 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN-- 1120 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred cchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcC
Q 004614 241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG 320 (742)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~ 320 (742)
..+++++++.+||||++.|+.++.++||++++.++++|++..|+.++||+|+|+|.|+++.+..||+++||+..++ ++
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~--~~ 1198 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL--IN 1198 (1702)
T ss_pred cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh--hh
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999999888 67
Q ss_pred cchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHH
Q 004614 321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML 400 (742)
Q Consensus 321 ~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~l 400 (742)
++.+++|++|.+++++||||+++++|++|+|.+++.+++|++.+++|.++|+++|++|+.|+..|+.++|.++.||.+++
T Consensus 1199 ~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1199 IETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKL 1278 (1702)
T ss_pred hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhchhhhhhhhhhh
Q 004614 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVI 479 (742)
Q Consensus 401 l~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~-d~~~r~~a~~~l~~i~~~~~~~~~~~~~~v 479 (742)
+++|+.++ .|||+.||+.++.|+|+|+++.++++..++++.+..+|.+ ++..+..++..+..|++++.+.|++|.+.+
T Consensus 1279 l~al~~g~-~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaI 1357 (1702)
T KOG0915|consen 1279 LRALFPGA-KDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAI 1357 (1702)
T ss_pred HHHHhhcc-ccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHH
Confidence 99999999 6999999999999999999999999999999999999963 344344444444449999999999999999
Q ss_pred hhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccC-CCHHHHHHHHHHHHHHHHHhCcchh-hh
Q 004614 480 VPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEILGESLS-NY 557 (742)
Q Consensus 480 lP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~-~sw~vR~~Aa~~lg~La~~~g~~~~-~~ 557 (742)
+|++|.+||+++++..++|.++|.++++|+.++++.|.++|+..++....+ .+|.+|.++|+++..++........ |+
T Consensus 1358 LPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ 1437 (1702)
T KOG0915|consen 1358 LPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPV 1437 (1702)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHH
Confidence 999999999998999999999999999999999999999998887777655 4599999999999999987766554 57
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcC
Q 004614 558 HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (742)
Q Consensus 558 ~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~ 637 (742)
+..+.+.+...+.||+|+||+.+++|+.....+|...+.. -.+.|..+..+++.+++..|+..+..+.|....+.+
T Consensus 1438 ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~----~~~si~~A~~~e~sr~~~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1438 ILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKR----NMSSIEHAVMEEVSRREAKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHH----hchHHHHHHHHHHHHHHhHHHHHHHhhhHHHHhhhh
Confidence 8889999999999999999999999999998888765432 245899999999999999999999999999999987
Q ss_pred CCch
Q 004614 638 DPKF 641 (742)
Q Consensus 638 ~~~~ 641 (742)
.+.+
T Consensus 1514 ~e~~ 1517 (1702)
T KOG0915|consen 1514 AERF 1517 (1702)
T ss_pred hhhH
Confidence 6543
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-32 Score=311.39 Aligned_cols=629 Identities=14% Similarity=0.126 Sum_probs=423.2
Q ss_pred cCCCcccccCCcccCCC-CCCCcchHHHHHHHhhhcCChhHHHHHHHHh---ccccchhhhhhHHhhHHHHHHHhhhhhc
Q 004614 36 LAEDSEVFQEGAIGEGL-GGGKLSTYKELCNLANEMGQPDLIYKFMDLA---NYQVSLNSKRGAAFGFSKIAKQAGDALK 111 (742)
Q Consensus 36 ~~~~t~~f~~g~~~~~~-~~~~~~tyk~l~~lA~~~~~p~lv~~fm~l~---~~~~~w~~r~~A~~~l~~i~~~~~~~l~ 111 (742)
++.|-|..++..+.... +.-...+-+.|+.+|..+|+..+.+.+|+.. -.+++|..|++|.+++++|.+||.+.|+
T Consensus 305 ~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 305 EEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMI 384 (1075)
T ss_pred cccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 34454555555554221 1235677789999999999998888887765 4466799999999999999999999999
Q ss_pred hhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHH-HHHHHHHHhhCCCC-hhHHHHHHHHHHHHhccCC
Q 004614 112 PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRL-WRSREASCLSLADIIQGRK 189 (742)
Q Consensus 112 ~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~-~il~~Ll~~l~~~~-wrvR~aa~~Al~~L~~~~~ 189 (742)
+.|++|+|.++.++.||+|.||.+++++.+++.+|.+..+.+++. .+.+.|+..+.+.. .||..+|+.|+.++.+.+.
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999998777766655 55557777776654 5999999999999999999
Q ss_pred chhhhhHHHHHHHH-HHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhc-CCCC--ChH
Q 004614 190 FDQVGKHLRRIWTA-AFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE-GILS--KVD 265 (742)
Q Consensus 190 ~~~l~~~L~~i~~~-l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~-gl~~--~~~ 265 (742)
.+.++|||+.++.. +..+.+..++.||+.+..++..++...- ....++.+.+||.|..- +..+ +..
T Consensus 465 ~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~----------~~F~pY~d~~Mp~L~~~L~n~~~~d~r 534 (1075)
T KOG2171|consen 465 KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ----------EKFIPYFDRLMPLLKNFLQNADDKDLR 534 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----------hhhHhHHHHHHHHHHHHHhCCCchhhH
Confidence 99999999999994 4455677899999999776666654331 12456888888888751 1112 456
Q ss_pred HHHHHHHHHHHHHHHhcC-cccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHH
Q 004614 266 SISKASIGVVMKLVKGAG-IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLD 344 (742)
Q Consensus 266 ~vr~~a~~~L~~la~~~g-~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~ 344 (742)
++|...++|++-++...| +.|.|+..++|..+++.-.+.. ++-|-.| |.+..+..
T Consensus 535 ~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~------------------~~dd~~~------sy~~~~wa 590 (1075)
T KOG2171|consen 535 ELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ------------------DDDDPLR------SYMIAFWA 590 (1075)
T ss_pred HHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch------------------hhccccH------HHHHHHHH
Confidence 888899999999999888 5699999999998887632110 0001111 22233333
Q ss_pred HHHhhcChh---HHhhHHHHHHHHHHcc------------------------------CCC-----chHhhHHHHHHHHH
Q 004614 345 LCINVVDTE---SLDQLVPHLARLVRSG------------------------------IGL-----NTRVGVASFISLLV 386 (742)
Q Consensus 345 ~~~~~~d~~---~l~~lvp~L~~~l~~~------------------------------~~~-----~~r~~a~~~l~~L~ 386 (742)
.+++.++++ .++.++|.+.+..+.. ++. ..|..++..++.++
T Consensus 591 rmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a 670 (1075)
T KOG2171|consen 591 RMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYA 670 (1075)
T ss_pred HHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHH
Confidence 444444433 2355566665555311 011 12446788999999
Q ss_pred HHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCH------HHHHHHHHHHHHhhc---CCchhHHHH
Q 004614 387 QKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP------SQAQKLIEETAALHI---DDKNSQISC 457 (742)
Q Consensus 387 ~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~------~~~~~li~~l~~~~~---~d~~~r~~a 457 (742)
...+..|.||.+..++..+..+.-.....||++++.++..+++.... ..+..+...+...+. .++..+...
T Consensus 671 ~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl 750 (1075)
T KOG2171|consen 671 KELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVL 750 (1075)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHH
Confidence 99999999999999996555554567789999999999988764321 122222222222221 122223333
Q ss_pred HHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHH---HHHhcCC-ChhhHHhhHHHHHHHHHhhccCCCH
Q 004614 458 AILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEEL---WEENTSG-DRVTLQLYLGEIVSLICEGIASSSW 533 (742)
Q Consensus 458 ~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~---~~~~~~~-~~~~i~~yl~~il~~l~~~L~~~sw 533 (742)
..++.+|++... .+.+..+ .++........+ ...+... +.+..+..-++...---+.+.+.+-
T Consensus 751 ~~vl~~f~~~i~----~~G~~~L---------~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~ 817 (1075)
T KOG2171|consen 751 SEILESFAECIE----VMGDNCL---------NEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDA 817 (1075)
T ss_pred HHHHHHHHHHHH----hcCcccC---------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhH
Confidence 344444432211 1111000 111111111111 1110000 0000010100000000011114455
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHH
Q 004614 534 SSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSS 612 (742)
Q Consensus 534 ~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~-~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~ 612 (742)
.+-..+...+..+++..+..|.+++..++|.+.+-+. .+.|. |+-.+-.++.++++|+.+. .++.+.+.+.+..
T Consensus 818 ~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d~ie~~~~a~----~~~~~~~~p~~~~ 892 (1075)
T KOG2171|consen 818 YLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA-RQWAVCIFDDLIEGCGEAS----AKYKERFLPLVLE 892 (1075)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHhccccc----chHHHHHHHHHHH
Confidence 6777788899999999999999999999999999995 46677 9999999999999998654 5678999999999
Q ss_pred HHhhhCHHHHHHHHHHHHHHHHHcCCCchHHhH----HHHHHhhhcCccccCCCCCCCCCCCCcccc---ccccCCcchh
Q 004614 613 ACRKKIKKYREAAFSCLEQVIKAFRDPKFFNII----FPLLFEMCGSTALNKSGQVPLPSDASKEES---ADESVSAPLD 685 (742)
Q Consensus 613 ~~~~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v----~~il~~~~~~~~~~~~~~~~a~~~~a~~~~---~~~~~~~p~~ 685 (742)
.+.+++++||++|...+|.+++..+. .+.+++ ..++..+.+.... .+-...|.+|+.++.+ .|+...+|++
T Consensus 893 ~~~d~~pEVRqaAsYGiGvlaq~~g~-~y~~v~~~~l~~L~~~iq~~~ar-~Ee~~~ateNa~gaiaki~~~~~~~i~vd 970 (1075)
T KOG2171|consen 893 ALQDSDPEVRQAAAYGMGVLAQFGGE-DYAPVCSEALPLLVQVLQPPLAR-TEENRRATENAIGAIAKILLFNPNRIPVD 970 (1075)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHHHcChhhh-hHHHhHHHHHHHHHHHHHHHhCCccCcHH
Confidence 99999999999999999999998764 333332 2333333333211 2345567778888888 5788888899
Q ss_pred hhhhhhhhHH-------------------HhhchhhHHhhhhhhhhhhhhcC
Q 004614 686 KVLDCVSSCI-------------------HVAHVNDIIEQEKNLVQLFTISL 718 (742)
Q Consensus 686 ~i~~~~~~a~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 718 (742)
++++.+.+.+ -.+++|.|..+-.+.|+.|..++
T Consensus 971 qvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~ 1022 (1075)
T KOG2171|consen 971 QVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVC 1022 (1075)
T ss_pred HHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHH
Confidence 9999999988 13788888885555555555444
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=298.33 Aligned_cols=612 Identities=15% Similarity=0.169 Sum_probs=437.4
Q ss_pred ceeecCChhHHHHHHHHHHHHhccCCccccccccCCCcc----------cccCCcccCCCCCCCcchHHHHHHHhhhcCC
Q 004614 3 VVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSE----------VFQEGAIGEGLGGGKLSTYKELCNLANEMGQ 72 (742)
Q Consensus 3 ~~y~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~----------~f~~g~~~~~~~~~~~~tyk~l~~lA~~~~~ 72 (742)
|||-+.+.+.....++++-+-+.-..-|.+..+...+.. +.++..+=.++.|-=+|| |.+--.--+|
T Consensus 50 L~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITT---I~s~~~~~~w 126 (885)
T KOG2023|consen 50 LIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITT---IASTGGLQHW 126 (885)
T ss_pred eeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeee---eecccccccc
Confidence 577777777777777776665554433322222222211 122222222223333444 2333345689
Q ss_pred hhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhc-----hhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCC
Q 004614 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK-----PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP 147 (742)
Q Consensus 73 p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~-----~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~ 147 (742)
|++.+.++.+.++.. .+..+||+-||.+|+|++.+.++ .-+.-++|++++++.+|+|.+|.-+..|.++++-..
T Consensus 127 pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 999999999998874 78899999999999999866554 347789999999999999999999999999988766
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 004614 148 KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (742)
Q Consensus 148 ~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~ 227 (742)
+..+..+++..++.++...+|.++.||+-.|.||.-|++.++ +.+.|||..|+...+..-+|.++.|.-.|++..-+++
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~-dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP-DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH-HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 677888999999999999999999999999999999999887 8999999999999999999999999888876544432
Q ss_pred H-----------------HHHh----------hhc---c-----------------------------------------
Q 004614 228 S-----------------LTIR----------LCD---V----------------------------------------- 236 (742)
Q Consensus 228 ~-----------------~~~r----------~~~---~----------------------------------------- 236 (742)
. ++++ +++ +
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 1 1110 000 0
Q ss_pred ------------ccC---ccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhc
Q 004614 237 ------------TLT---EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESL 301 (742)
Q Consensus 237 ------------~~~---~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~l 301 (742)
..- .+..+.+.+..++|+|.+ .|.++.|-+|+...-++|+||+.+-+.+-||+|+|+|.|++.|
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~-~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L 443 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKE-HLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLL 443 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHH-HcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHh
Confidence 000 011234678888998876 4777899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhc-ChhHHhhHHHHHHHHHHccCCCchHh--hH
Q 004614 302 SSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV-DTESLDQLVPHLARLVRSGIGLNTRV--GV 378 (742)
Q Consensus 302 s~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~-d~~~l~~lvp~L~~~l~~~~~~~~r~--~a 378 (742)
++..|-+++..+|..++|+- ++ ..+.-..|.|.|..+++.-.+-+.|+ ++
T Consensus 444 ~DKkplVRsITCWTLsRys~---------------------------wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAA 496 (885)
T KOG2023|consen 444 DDKKPLVRSITCWTLSRYSK---------------------------WVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAA 496 (885)
T ss_pred ccCccceeeeeeeeHhhhhh---------------------------hHhcCChHhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 99988888877777766532 11 01122457777777777766767666 78
Q ss_pred HHHHHHHHHHhcccccccHHHHHHHHhhhhh--ccccHHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHHHHhhc--C
Q 004614 379 ASFISLLVQKIGMDIKPYTSMLLRLLFPVVK--EEKSAAAKRAFASACASVLKYAT-----PSQAQKLIEETAALHI--D 449 (742)
Q Consensus 379 ~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~--~D~~~~Vr~~~~~al~~L~~~~~-----~~~~~~li~~l~~~~~--~ 449 (742)
+..+..+-...|.++.||++.+++.+...+. +.+|--| ...|+|.+....+ +..++.+++.+++.|. .
T Consensus 497 csAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ls 573 (885)
T KOG2023|consen 497 CSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLS 573 (885)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcC
Confidence 8888999999999999999999999999884 2333222 3567777776653 4458899999998884 3
Q ss_pred CchhH-HHHHHHHHHHHhhchhhhhhhhhhhhhHhhH-----------hhcC-----CchHHHHHHHHHHHHhcCCChhh
Q 004614 450 DKNSQ-ISCAILLKSYSSVASDVLSGYHAVIVPVIFI-----------SRFE-----DDKYVSDLFEELWEENTSGDRVT 512 (742)
Q Consensus 450 d~~~r-~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~-----------~~~d-----~~~~v~~~~~~~~~~~~~~~~~~ 512 (742)
|++.. .-.-+++.+++...+..|-+|...+...-+. ..+| ++++.--...+...++..|.+++
T Consensus 574 d~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ 653 (885)
T KOG2023|consen 574 DSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSH 653 (885)
T ss_pred cccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhc
Confidence 33322 2234666677666666665554433321111 1122 23331111113444444444445
Q ss_pred HHhhH--HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhh
Q 004614 513 LQLYL--GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (742)
Q Consensus 513 i~~yl--~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~ 590 (742)
+.+.+ ..|++++.+++.|...+||++|...+|+++..+.+.+.|+...++|.|-..+....-++-..++-|+|+++.+
T Consensus 654 ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k 733 (885)
T KOG2023|consen 654 IEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALK 733 (885)
T ss_pred hHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHH
Confidence 54443 4589999999999999999999999999999999999999999999999888776666778889999999998
Q ss_pred cccccCcCCCCchHHHHHHHHHHHhhh--CHHHHHHHHHHHHHHHHHcCC---CchHHhHHHHHHhhhc
Q 004614 591 CHKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRD---PKFFNIIFPLLFEMCG 654 (742)
Q Consensus 591 ~~~~~~~~~~~~~~~iv~~l~~~~~~~--~~~~R~~a~~~Lg~l~~~~~~---~~~~~~v~~il~~~~~ 654 (742)
.+.... ++...++.-+..-++++ +..+-.+.+-++|++...-|. .++...+-|+-..+..
T Consensus 734 ~g~~~~----~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~ 798 (885)
T KOG2023|consen 734 MGLKMK----QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRN 798 (885)
T ss_pred hchhhh----hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcc
Confidence 875442 45666666555555554 456778888899998877664 2455566677765543
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-34 Score=307.14 Aligned_cols=486 Identities=16% Similarity=0.182 Sum_probs=364.5
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 004614 152 DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (742)
Q Consensus 152 ~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~ 231 (742)
++++.++.+ |++...+++..+|.++...+.++-+ .+++.+||..|+... ......+|.+|+-++|+-.+
T Consensus 9 e~~l~ql~~-lLk~s~Spn~~~~~~~~~~leq~~~---~pdfnnYL~~IL~~~----~~~d~~~Rs~aGLlLKNnvr--- 77 (885)
T KOG2023|consen 9 EQGLQQLAQ-LLKNSQSPNSETRNNVQEKLEQFNL---FPDFNNYLIYILIRA----KSEDVPTRSLAGLLLKNNVR--- 77 (885)
T ss_pred HHHHHHHHH-HHHhccCCChHHHHHHHHHHHHHhc---ccchhceeeEEEecc----cccchhHHHHhhhhHhcccc---
Confidence 456677666 5556667889999999988777644 578899988885543 33445679999888887532
Q ss_pred hhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHH
Q 004614 232 RLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNY 311 (742)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~ 311 (742)
.-... ..++.+.-+-...+ +|+.+.++-+|......+..|+...|-. ++|+++|.|.++|.+...
T Consensus 78 -~~~~~-----~~~~~~~yiKs~~l-~~lgd~~~lIr~tvGivITTI~s~~~~~---~wpelLp~L~~~L~s~d~----- 142 (885)
T KOG2023|consen 78 -GHYNS-----IPSEVLDYIKSECL-HGLGDASPLIRATVGIVITTIASTGGLQ---HWPELLPQLCELLDSPDY----- 142 (885)
T ss_pred -ccccC-----CChHHHHHHHHHHH-hhccCchHHHHhhhhheeeeeecccccc---cchhHHHHHHHHhcCCcc-----
Confidence 21111 11222222222223 2777777889998888888888877743 559999999999975321
Q ss_pred HHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChh----HHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHH
Q 004614 312 IELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE----SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQ 387 (742)
Q Consensus 312 ~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~----~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~ 387 (742)
+..+.++ +++.+.+|+..+.+|.+ -++.++|+++++.+++ ....|..+...+..++.
T Consensus 143 --------n~~EgA~----------~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 143 --------NTCEGAF----------GALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFII 203 (885)
T ss_pred --------cccchhH----------HHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheee
Confidence 1112223 23556777777777765 3678999999999886 34456666666665555
Q ss_pred HhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHH---HHHHHHHHHHhhc-CCchhHHHHHHHHHH
Q 004614 388 KIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ---AQKLIEETAALHI-DDKNSQISCAILLKS 463 (742)
Q Consensus 388 ~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~---~~~li~~l~~~~~-~d~~~r~~a~~~l~~ 463 (742)
.-...+.-+++++++.++... +|.+++||+..+.|+.+|.++.++.. +.+++++++..-. .|++....+|++|.+
T Consensus 204 ~~~qal~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 204 IQTQALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 556667667999999999988 89999999999999999999988764 5778888887765 588899999999999
Q ss_pred HHhh--chhhhhhhhhhhhhHhhHhhcC-------------------CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHH
Q 004614 464 YSSV--ASDVLSGYHAVIVPVIFISRFE-------------------DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVS 522 (742)
Q Consensus 464 i~~~--~~~~~~~~~~~vlP~l~~~~~d-------------------~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~ 522 (742)
++.. ..+.+++|+++++|+++.+|.. .++++|+-|.+-.+...++....-...-++. +
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~-D 361 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED-D 361 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc-c
Confidence 9865 4678999999999999988742 2233455444332211111100000000000 0
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCc
Q 004614 523 LICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTT 602 (742)
Q Consensus 523 ~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~ 602 (742)
..-...+|.+|+|+|++|+.|++.+|..+ ++.++|.|.+.|...+|-+||+.+-|||++++||.+++. ++
T Consensus 362 ---DdD~~~dWNLRkCSAAaLDVLanvf~~el---L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~----p~ 431 (885)
T KOG2023|consen 362 ---DDDAFSDWNLRKCSAAALDVLANVFGDEL---LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFV----PH 431 (885)
T ss_pred ---cccccccccHhhccHHHHHHHHHhhHHHH---HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcc----cc
Confidence 01112469999999999999999999875 678999999999888899999999999999999998874 56
Q ss_pred hHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCC----chHHhHHHHHHhhhcCccccCCCCCCCCCCCCccccccc
Q 004614 603 PFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP----KFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADE 678 (742)
Q Consensus 603 ~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~----~~~~~v~~il~~~~~~~~~~~~~~~~a~~~~a~~~~~~~ 678 (742)
.|.+++.++..+.++.+.||+.++|+|++|..|.-.+ .+.+++.+++..+.++++. +|++||+|+|+.++.+.
T Consensus 432 LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~---VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKK---VQEAACSAFATLEEEAG 508 (885)
T ss_pred hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999998642 4677888999999999888 89999999999999889
Q ss_pred cCCcch-hhhhhhhhhHHHh
Q 004614 679 SVSAPL-DKVLDCVSSCIHV 697 (742)
Q Consensus 679 ~~~~p~-~~i~~~~~~a~~~ 697 (742)
..++|| ++|+..++-||..
T Consensus 509 ~eLVp~l~~IL~~l~~af~k 528 (885)
T KOG2023|consen 509 EELVPYLEYILDQLVFAFGK 528 (885)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999953
No 5
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7e-25 Score=237.98 Aligned_cols=430 Identities=15% Similarity=0.188 Sum_probs=318.4
Q ss_pred CcchHHHHHHHhhhcCCh--hHHHHHHHHhccccchhhhhhHHhhHHHHHHHh-hhhhchhhhhhhHHHhhhcCCCCHHH
Q 004614 56 KLSTYKELCNLANEMGQP--DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA-GDALKPHLRLLIPKLVRFQYDPDKNV 132 (742)
Q Consensus 56 ~~~tyk~l~~lA~~~~~p--~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~-~~~l~~~l~~lip~L~~~~~Dp~~~V 132 (742)
++++..||..+|+.+||. ..|.+|+.-...+++|+.|++|+++||+|++|. .+.+.|++++.+|.+.....||+-.|
T Consensus 343 ~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~V 422 (859)
T KOG1241|consen 343 AKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWV 422 (859)
T ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhh
Confidence 689999999999999996 568888888888889999999999999999996 56888999999999999999999999
Q ss_pred HHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccC--------CchhhhhHHHHHHH
Q 004614 133 QDAMAHIWKSLVADPKR--TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR--------KFDQVGKHLRRIWT 202 (742)
Q Consensus 133 R~a~~~iw~~lv~d~~~--~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~--------~~~~l~~~L~~i~~ 202 (742)
|+++.-.++.+...-+. .-.+|...+++.++.++.| ++||-..+|||+-.|.++. ..+...|+++.|+.
T Consensus 423 kdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~ 501 (859)
T KOG1241|consen 423 KDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIG 501 (859)
T ss_pred cchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHH
Confidence 99986666666643222 2366889999999999988 7999999999999999633 11245689999999
Q ss_pred HHHHHcc--C-CcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhc----------CCCC--ChHHH
Q 004614 203 AAFRAMD--D-IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE----------GILS--KVDSI 267 (742)
Q Consensus 203 ~l~~~l~--D-~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~----------gl~~--~~~~v 267 (742)
.++++-+ | .....|.+|.+++..+.+.+...+. +++..+.++++.+ ++.+ ...++
T Consensus 502 ~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy----------~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eL 571 (859)
T KOG1241|consen 502 SLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVY----------PMVQKLTLVILEKLDQTISSQILSLADRAQLNEL 571 (859)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHH----------HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHH
Confidence 9999876 3 4566899999888888765543332 2233333333321 2222 13688
Q ss_pred HHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHH-HH
Q 004614 268 SKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLD-LC 346 (742)
Q Consensus 268 r~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~-~~ 346 (742)
+...|.+|+.+.++.+..++++...||..|+..+.+..+.++ .++.+-+ .+.+++.++ .+
T Consensus 572 Qs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v------------~e~a~la-------V~tl~~~Lg~~F 632 (859)
T KOG1241|consen 572 QSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVV------------HEEAFLA-------VSTLAESLGKGF 632 (859)
T ss_pred HHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccc------------hHHHHHH-------HHHHHHHHhHhH
Confidence 999999999999999999999999999999999986332221 1222211 122333343 23
Q ss_pred HhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHH
Q 004614 347 INVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACAS 426 (742)
Q Consensus 347 ~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~ 426 (742)
.+ .++.|.|+|...+++-.+.+.-..++++++.|++..+..|.||++.++..|++.| + ++.+++....++
T Consensus 633 ~k-----ym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~L-s--s~~~hR~vKP~I-- 702 (859)
T KOG1241|consen 633 AK-----YMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCL-S--SPNLHRNVKPAI-- 702 (859)
T ss_pred HH-----HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHc-c--CccccccccchH--
Confidence 33 3689999999999766566666788999999999999999999999999999999 3 333444432222
Q ss_pred HHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhc---C-----CchHH---H
Q 004614 427 VLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF---E-----DDKYV---S 495 (742)
Q Consensus 427 L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~---d-----~~~~v---~ 495 (742)
-.+++-|+-..+..|.+|+..++|.+-.+.. | ..+++ |
T Consensus 703 -------------------------------lS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LR 751 (859)
T KOG1241|consen 703 -------------------------------LSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELR 751 (859)
T ss_pred -------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 2344445555588999999999999876652 1 12233 4
Q ss_pred HHHHHHHHHhcCCCh-----hhHHhhHHHHHHHHHhhccCC--CHHHHHHHHHHHHHHHHHhCcchhh
Q 004614 496 DLFEELWEENTSGDR-----VTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSN 556 (742)
Q Consensus 496 ~~~~~~~~~~~~~~~-----~~i~~yl~~il~~l~~~L~~~--sw~vR~~Aa~~lg~La~~~g~~~~~ 556 (742)
+...+.+..++.|.+ ..+++|++.|+.++-+.-.++ +-.+-++|+..|||||..+|....+
T Consensus 752 e~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 752 EGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 433344444433322 356799999999998877654 4678899999999999999976544
No 6
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-23 Score=228.38 Aligned_cols=433 Identities=14% Similarity=0.197 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 004614 152 DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (742)
Q Consensus 152 ~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~ 231 (742)
+..++++++++-+++.+++||.|+++..|||.+++|+....+.|+..+.+|.+.+.|.|..--||.++ .+++++++-
T Consensus 359 D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTa---AwtlgrI~d 435 (859)
T KOG1241|consen 359 DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTA---AWTLGRIAD 435 (859)
T ss_pred ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchH---HHHHHHHHh
Confidence 44677889999999999999999999999999999999999999999999999999999999999887 566655542
Q ss_pred hhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcC---------cccccchhhHHHHHHHhcc
Q 004614 232 RLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG---------IAIRPHLSDLVSCMLESLS 302 (742)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g---------~~l~p~lp~Lv~~Ll~~ls 302 (742)
-..+.. .....+..+++.+++ |+. +.+.+...+|+++..+++.+. +...||.+.|+..|++.-.
T Consensus 436 ~l~e~~-----~n~~~l~~~l~~l~~-gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~td 508 (859)
T KOG1241|consen 436 FLPEAI-----INQELLQSKLSALLE-GLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTD 508 (859)
T ss_pred hchhhc-----ccHhhhhHHHHHHHH-Hhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhcc
Confidence 222111 134577778888775 664 578889999999999997642 1244788888888887654
Q ss_pred ccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHH---h----hHHHHHHHHHHcc-CCCch
Q 004614 303 SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESL---D----QLVPHLARLVRSG-IGLNT 374 (742)
Q Consensus 303 ~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l---~----~lvp~L~~~l~~~-~~~~~ 374 (742)
..+-. -..+|.+ ..+||.+++++.-+++- . ..+-+|.+.+.+. .+...
T Consensus 509 r~dgn------------------qsNLR~A------AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~d 564 (859)
T KOG1241|consen 509 RADGN------------------QSNLRSA------AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLAD 564 (859)
T ss_pred ccccc------------------hhhHHHH------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 22110 0124432 45677777777655432 2 2333344444411 22223
Q ss_pred Hh-------hHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 004614 375 RV-------GVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALH 447 (742)
Q Consensus 375 r~-------~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~ 447 (742)
|. --+..|..+.++.+.++.++.+.+|..+++.+..-++..|.+.+.
T Consensus 565 r~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~-------------------------- 618 (859)
T KOG1241|consen 565 RAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAF-------------------------- 618 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHH--------------------------
Confidence 32 245667777888999999999999999999994324444444433
Q ss_pred cCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcC-CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHh
Q 004614 448 IDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE-DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICE 526 (742)
Q Consensus 448 ~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d-~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~ 526 (742)
..+++++...+..|..|++.|.|++..++.. .+-.|.....++..++....+..+.+|.++++..+++
T Consensus 619 -----------laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq 687 (859)
T KOG1241|consen 619 -----------LAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQ 687 (859)
T ss_pred -----------HHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3444455556888999999999999999855 4445887777888888777777899999999999999
Q ss_pred hccCCC--HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC---C--------ChhhHHHHHHHHHHHHhhccc
Q 004614 527 GIASSS--WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG---R--------LWEGKDALLYAIGSISTSCHK 593 (742)
Q Consensus 527 ~L~~~s--w~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~---r--------~~~~ke~vl~aL~~l~~~~~~ 593 (742)
+|.++. .++|.....++||+|..+|.+|.+|+..++|.|.++-+- + .-..|+++++++..++.+.+.
T Consensus 688 ~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~ 767 (859)
T KOG1241|consen 688 CLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKT 767 (859)
T ss_pred HccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999874 689999999999999999999999999999999888732 2 013599999999999999884
Q ss_pred ccCc-CCCCchHHHHHHHHHHHhhh--CHHHHHHHHHHHHHHHHHcCCCch-----HHhHHHHHHhhhcC
Q 004614 594 DISA-EDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRDPKF-----FNIIFPLLFEMCGS 655 (742)
Q Consensus 594 ~~~~-~~~~~~~~iv~~l~~~~~~~--~~~~R~~a~~~Lg~l~~~~~~~~~-----~~~v~~il~~~~~~ 655 (742)
.-.. ...++.+.|+.++.+-..++ +..+-..|+..+|+++..+|++.. .+.+..+|.+.++.
T Consensus 768 ~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~ 837 (859)
T KOG1241|consen 768 HADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKS 837 (859)
T ss_pred ccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhh
Confidence 2221 12478899999888765443 467888999999999999986321 23566777666643
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.94 E-value=5.2e-24 Score=234.75 Aligned_cols=347 Identities=14% Similarity=0.127 Sum_probs=281.6
Q ss_pred hHHhhHHHHHHHHHHcc-CCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhC
Q 004614 353 ESLDQLVPHLARLVRSG-IGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA 431 (742)
Q Consensus 353 ~~l~~lvp~L~~~l~~~-~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~ 431 (742)
.+++.+.|.+.+.+... .....++.+++.+..+..++|..+.+|...++..++..+ +..-..|||.++.++|.+..++
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql-~s~R~aVrKkai~~l~~la~~~ 205 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQL-QSPRLAVRKKAITALGHLASSC 205 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcc-cChHHHHHHHHHHHHHHHHHhc
Confidence 34566777776666432 223478899999999999999999999999999999999 5666899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcC---CchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhh---cCCchHHHHHHHHHHHHh
Q 004614 432 TPSQAQKLIEETAALHID---DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISR---FEDDKYVSDLFEELWEEN 505 (742)
Q Consensus 432 ~~~~~~~li~~l~~~~~~---d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~---~d~~~~v~~~~~~~~~~~ 505 (742)
+.+....+++.+...+.. ....|..+ .+++++++.++.+|..|.+.++|++.... ..++++.|+...+.++.+
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~I-q~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~f 284 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTYI-QCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESF 284 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHHH-HHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 999999999998887742 23456555 99999999999999999999999998877 457788999999999999
Q ss_pred cCCChhhHHhhHHHHHHHHHhhcc----------------------------------CCCHHHHHHHHHHHHHHHHHhC
Q 004614 506 TSGDRVTLQLYLGEIVSLICEGIA----------------------------------SSSWSSKRKSAKAICKLGEILG 551 (742)
Q Consensus 506 ~~~~~~~i~~yl~~il~~l~~~L~----------------------------------~~sw~vR~~Aa~~lg~La~~~g 551 (742)
...||..+-+|.++|+++++.++. |.+|+|||+||+|+..++.+..
T Consensus 285 l~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~ 364 (1233)
T KOG1824|consen 285 LRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL 364 (1233)
T ss_pred HHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccH
Confidence 999999999999999999999993 4689999999999999999888
Q ss_pred cchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccC---------cCC--------CCchHHHHHHHHHHH
Q 004614 552 ESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS---------AED--------PTTPFAIVDMVSSAC 614 (742)
Q Consensus 552 ~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~---------~~~--------~~~~~~iv~~l~~~~ 614 (742)
+.+..+++.+-|.++.++++|++++|..++.++..+...++-... ... ....+.|++.+.+.+
T Consensus 365 E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ql 444 (1233)
T KOG1824|consen 365 EMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQL 444 (1233)
T ss_pred HHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHH
Confidence 877778999999999999999999999999999999988763221 011 124688999999999
Q ss_pred hhhCHHHHHHHHHHHHHHHHHcCC---CchHHhHHHHHHhhhcCccccCCCCCCCCCCCCcccccc-ccCCcch-hhhhh
Q 004614 615 RKKIKKYREAAFSCLEQVIKAFRD---PKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESAD-ESVSAPL-DKVLD 689 (742)
Q Consensus 615 ~~~~~~~R~~a~~~Lg~l~~~~~~---~~~~~~v~~il~~~~~~~~~~~~~~~~a~~~~a~~~~~~-~~~~~p~-~~i~~ 689 (742)
+.++.++|+.++..|..++...|+ +++..++..|...+.+.+..+- ..-.+..-.-++-..| ..+..|| .++.+
T Consensus 445 r~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~-~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~ 523 (1233)
T KOG1824|consen 445 REKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSN-LKIDALVFLYSALISHPPEVFHPHLSALSP 523 (1233)
T ss_pred hhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHH-HHHHHHHHHHHHHhcCChhhcccchhhhhh
Confidence 999999999999999999999997 4677788888888877653200 0000000000011145 7899999 99999
Q ss_pred hhhhHHHhhchhh
Q 004614 690 CVSSCIHVAHVND 702 (742)
Q Consensus 690 ~~~~a~~~~~~~~ 702 (742)
.+..|+.+.|..-
T Consensus 524 ~v~~aV~d~fyKi 536 (1233)
T KOG1824|consen 524 PVVAAVGDPFYKI 536 (1233)
T ss_pred HHHHHhcCchHhh
Confidence 9999998766543
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.2e-21 Score=219.82 Aligned_cols=569 Identities=14% Similarity=0.155 Sum_probs=401.0
Q ss_pred eeecCChhHHHHHHHHHHHHhccCCcc-ccccccCCCcccccCCcccCCCCCCCcchHHHHHHHhhhc---CChhHHHHH
Q 004614 4 VYELGDASMKQNLVDALVTTLTGSGKR-KRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEM---GQPDLIYKF 79 (742)
Q Consensus 4 ~y~~~~~~~~~~lv~~l~~~~~~~~~~-~~~~~~~~~t~~f~~g~~~~~~~~~~~~tyk~l~~lA~~~---~~p~lv~~f 79 (742)
+|..=++|.|..+-.+|+..+...... .+ .+--.-+-.+|++. +||+++.-+
T Consensus 68 ~w~~l~~e~~~siks~lL~~~~~E~~~~vr------------------------~k~~dviAeia~~~l~e~WPell~~L 123 (1075)
T KOG2171|consen 68 HWSRLSAEVQQSIKSSLLEIIQSETEPSVR------------------------HKLADVIAEIARNDLPEKWPELLQFL 123 (1075)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhccchHHH------------------------HHHHHHHHHHHHhccccchHHHHHHH
Confidence 455567888888888888888876541 10 01111222233321 689998888
Q ss_pred HHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCC--HHHHHHHHHH
Q 004614 80 MDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP--KRTIDEHLDL 157 (742)
Q Consensus 80 m~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~--~~~i~~~~~~ 157 (742)
.+..++. +-+-|+.|.+-|.++.+.-+..+.||+..+.+-+-.++.||+..||-++.+...+++... .+....+|..
T Consensus 124 ~q~~~S~-~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~ 202 (1075)
T KOG2171|consen 124 FQSTKSP-NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD 202 (1075)
T ss_pred HHHhcCC-CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 8877665 468899999999999999999999999999999999999999999999988888876533 1344556666
Q ss_pred HHHHHHHhh----CCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHH
Q 004614 158 IFDDLLIQS----GSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD--DIKETVRTAGDKLCRSVTSLTI 231 (742)
Q Consensus 158 il~~Ll~~l----~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~--D~~~~VR~aA~~~~~~l~~~~~ 231 (742)
++|.++..+ .+.+-.+-..+..+|.+|++..+ .-+.||+.+|+...+.... +.++++|..|...+-.+++...
T Consensus 203 llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p-k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap 281 (1075)
T KOG2171|consen 203 LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP-KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAP 281 (1075)
T ss_pred HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH
Confidence 777666554 34444455666677777777665 7899999999999988765 5789999999888888776643
Q ss_pred hhhccccCccchhHhHHHHHhHHHhhc--CCCCC----------h---HHHHHHHHHHHHHHHHhcCcccccchhhHHHH
Q 004614 232 RLCDVTLTEISDARQSMDIVLPFLLAE--GILSK----------V---DSISKASIGVVMKLVKGAGIAIRPHLSDLVSC 296 (742)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~--gl~~~----------~---~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~ 296 (742)
..+.. ...+...++|.++.. .+..+ . ..-...|..+|..++-..|.. .-+|.+++.
T Consensus 282 ~~~k~-------~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~ 352 (1075)
T KOG2171|consen 282 AMCKK-------LALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEA 352 (1075)
T ss_pred HHhhh-------chhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHH
Confidence 33321 112555666666541 11111 1 124567889999999887743 345667777
Q ss_pred HHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHh
Q 004614 297 MLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRV 376 (742)
Q Consensus 297 Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~ 376 (742)
+-..+.+.+...+ ||+ +..-|.+.+.+.+.+. ..+++++|.++..++++ ...+|-
T Consensus 353 l~~~l~S~~w~~R-----~Aa---------------L~Als~i~EGc~~~m~----~~l~~Il~~Vl~~l~Dp-hprVr~ 407 (1075)
T KOG2171|consen 353 LEAMLQSTEWKER-----HAA---------------LLALSVIAEGCSDVMI----GNLPKILPIVLNGLNDP-HPRVRY 407 (1075)
T ss_pred HHHHhcCCCHHHH-----HHH---------------HHHHHHHHcccHHHHH----HHHHHHHHHHHhhcCCC-CHHHHH
Confidence 7777765433211 111 1111112222222222 24677888888888764 557888
Q ss_pred hHHHHHHHHHHHhccccccc-HHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-hh---c--C
Q 004614 377 GVASFISLLVQKIGMDIKPY-TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAA-LH---I--D 449 (742)
Q Consensus 377 ~a~~~l~~L~~~~g~~l~p~-~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~-~~---~--~ 449 (742)
+|+.+++.+.+.+...+..+ .+.+.+.++..+.+-.++.|...++.|+-....-++.+.+..|++.+.+ ++ . +
T Consensus 408 AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~ 487 (1075)
T KOG2171|consen 408 AALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS 487 (1075)
T ss_pred HHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999888766 5566678888884334578888888888888888888888777777766 32 1 3
Q ss_pred CchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcC-CchHHHHHHHH---HHHHhcCC-ChhhHHhhHHHHHHHH
Q 004614 450 DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE-DDKYVSDLFEE---LWEENTSG-DRVTLQLYLGEIVSLI 524 (742)
Q Consensus 450 d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d-~~~~v~~~~~~---~~~~~~~~-~~~~i~~yl~~il~~l 524 (742)
.+..+..+..++++++..+...|.+|.+.++|.+....+. .+++.|.+-.+ ..+.+... ++....++..++++++
T Consensus 488 ~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll 567 (1075)
T KOG2171|consen 488 KPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLL 567 (1075)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 4556778889999999999999999999999998776554 33555544333 32222111 1245668889999998
Q ss_pred Hhh---ccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC------------------Ch---------
Q 004614 525 CEG---IASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR------------------LW--------- 574 (742)
Q Consensus 525 ~~~---L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r------------------~~--------- 574 (742)
... ..+.+..+|.......+.+|+.+|++|.||++.++|.+.+..+.+ .|
T Consensus 568 ~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e 647 (1075)
T KOG2171|consen 568 LELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKE 647 (1075)
T ss_pred HhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCce
Confidence 887 566778899999999999999999999999999999998877533 11
Q ss_pred ---------hhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHH-HHHhhhCHHHHHHHHHHHHHHHHHc
Q 004614 575 ---------EGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVS-SACRKKIKKYREAAFSCLEQVIKAF 636 (742)
Q Consensus 575 ---------~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~-~~~~~~~~~~R~~a~~~Lg~l~~~~ 636 (742)
+.|+..+.+|+.++...+++. .+|+.+.++..+ ...-.-...||.+|+.++..++...
T Consensus 648 ~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F----~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~ 715 (1075)
T KOG2171|consen 648 NIGIRTSVLDEKETACEALGEYAKELKEAF----APYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCA 715 (1075)
T ss_pred eeeeeehhHHHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 128899999999998877654 567788777333 3322346789999999998887764
No 9
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.89 E-value=2.8e-20 Score=195.88 Aligned_cols=432 Identities=13% Similarity=0.120 Sum_probs=311.0
Q ss_pred CcchHHHHHHHhhhcCCh--hHHHHHHHHhccccchhhhhhHHhhHHHHHHHh-hhhhchhhhhhhHHHhhhcCCCCHHH
Q 004614 56 KLSTYKELCNLANEMGQP--DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA-GDALKPHLRLLIPKLVRFQYDPDKNV 132 (742)
Q Consensus 56 ~~~tyk~l~~lA~~~~~p--~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~-~~~l~~~l~~lip~L~~~~~Dp~~~V 132 (742)
|+++..||...|+..||. ..|..|+.-...+..|..|++|++|||+|+++. .+.+.+++++.+|.+...+.||.--|
T Consensus 345 smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~v 424 (858)
T COG5215 345 SMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWV 424 (858)
T ss_pred hhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeeh
Confidence 799999999999999997 568999999999989999999999999999985 56788999999999999999999999
Q ss_pred HHHHHHHHHHhccCCHHHH--HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCC------chhhhhHHHHHHHHH
Q 004614 133 QDAMAHIWKSLVADPKRTI--DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK------FDQVGKHLRRIWTAA 204 (742)
Q Consensus 133 R~a~~~iw~~lv~d~~~~i--~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~------~~~l~~~L~~i~~~l 204 (742)
.....-|++++...-+..+ ..|+......++.++.| .+++-..+||++-+|+.+.. ...+.++++.|+..+
T Consensus 425 k~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 425 KSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred hhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 9999888888875333333 56888999999999988 57778899999999987543 345788999999988
Q ss_pred HHHcc--CCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhc--------C----CCC--ChHHHH
Q 004614 205 FRAMD--DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE--------G----ILS--KVDSIS 268 (742)
Q Consensus 205 ~~~l~--D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~--------g----l~~--~~~~vr 268 (742)
.++-+ +.+...|.++.+++.++..+|.... .+++..+..+.+.+ | +.+ ..+|++
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V----------~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elq 573 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLILICPDAV----------SDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQ 573 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhhcchhH----------HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 88643 6777889999888888765553222 11222222222111 1 111 257899
Q ss_pred HHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHH-HH
Q 004614 269 KASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDL-CI 347 (742)
Q Consensus 269 ~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~-~~ 347 (742)
+.-+..|..++++.+.++++--++||..++..+.+.+|.... +++-. ..|.++..+++ +.
T Consensus 574 SN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~----------------~dV~~---aIsal~~sl~e~Fe 634 (858)
T COG5215 574 SNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAF----------------GDVYT---AISALSTSLEERFE 634 (858)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhh----------------hHHHH---HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876553211 11111 01223333432 33
Q ss_pred hhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHH
Q 004614 348 NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASV 427 (742)
Q Consensus 348 ~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L 427 (742)
.| .+.++|+|.+.++. .+.+....++.+++.|+...+.+|.+|++.++..|.+.+ + ++..++....++
T Consensus 635 ~y-----~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~l-s--s~~~~R~lKPai--- 702 (858)
T COG5215 635 QY-----ASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCL-S--SEATHRDLKPAI--- 702 (858)
T ss_pred HH-----HhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-c--ChhhccccchHH---
Confidence 33 57899999999843 455666688999999999999999999999999999999 3 334444443333
Q ss_pred HhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhc-CC-------chHHHHHHH
Q 004614 428 LKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF-ED-------DKYVSDLFE 499 (742)
Q Consensus 428 ~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~-d~-------~~~v~~~~~ 499 (742)
-..++-|+-..+..|.+|++.++-++..+.. ++ ++.++....
T Consensus 703 ------------------------------LSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~ 752 (858)
T COG5215 703 ------------------------------LSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQ 752 (858)
T ss_pred ------------------------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHH
Confidence 2344455555578899999998866544432 11 122222222
Q ss_pred HH---HHHhcCCC---hhhHHhhHHHHHHHHHhhccCCC--HHHHHHHHHHHHHHHHHhCc-chhhhHH
Q 004614 500 EL---WEENTSGD---RVTLQLYLGEIVSLICEGIASSS--WSSKRKSAKAICKLGEILGE-SLSNYHH 559 (742)
Q Consensus 500 ~~---~~~~~~~~---~~~i~~yl~~il~~l~~~L~~~s--w~vR~~Aa~~lg~La~~~g~-~~~~~~~ 559 (742)
.+ +-.++.+. .+.+.||+-.|...+-..-+|++ -..-|+|...||||+..+|. .++.++.
T Consensus 753 ~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~~~ 821 (858)
T COG5215 753 LVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFGLD 821 (858)
T ss_pred HHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhccc
Confidence 22 22222222 34677899999888887777764 45567888999999999886 4554443
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.88 E-value=8.4e-19 Score=184.80 Aligned_cols=538 Identities=14% Similarity=0.160 Sum_probs=348.1
Q ss_pred ccc--CCcccCCCCCC-CcchHHHHHH----HhhhcCChhHHHHHHHHhccccchhh----hhhHHh-hHHHHHHHhhhh
Q 004614 42 VFQ--EGAIGEGLGGG-KLSTYKELCN----LANEMGQPDLIYKFMDLANYQVSLNS----KRGAAF-GFSKIAKQAGDA 109 (742)
Q Consensus 42 ~f~--~g~~~~~~~~~-~~~tyk~l~~----lA~~~~~p~lv~~fm~l~~~~~~w~~----r~~A~~-~l~~i~~~~~~~ 109 (742)
||+ .|++++.|+.. -+++.++|.. +-+++....=...||+..-. .|+. -..|+| .|-+|+.---+.
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvce--atq~~d~e~q~aafgCl~kim~LyY~f 255 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCE--ATQGNDEELQHAAFGCLNKIMMLYYKF 255 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeeh--hccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 677 78887654433 2455555543 33445555555667765421 1222 223444 455577766778
Q ss_pred hchhhhhhhHH-HhhhcCCCCHHHHHHHHHHHHHhccCCHH---------------------------------------
Q 004614 110 LKPHLRLLIPK-LVRFQYDPDKNVQDAMAHIWKSLVADPKR--------------------------------------- 149 (742)
Q Consensus 110 l~~~l~~lip~-L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~--------------------------------------- 149 (742)
|.+|+.+.+-. +-++++.||..|.--+..-|..+....-+
T Consensus 256 m~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e 335 (858)
T COG5215 256 MQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE 335 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence 88888765444 45788899999988888888776542000
Q ss_pred -----------------------HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHH
Q 004614 150 -----------------------TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFR 206 (742)
Q Consensus 150 -----------------------~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~ 206 (742)
.-+..+.+++.++-+++.+++|+-|+++..|||.+++|+....+.+|.++.+|.+..
T Consensus 336 d~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n 415 (858)
T COG5215 336 DYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN 415 (858)
T ss_pred CccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH
Confidence 012345566666677788899999999999999999999988999999999999999
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcc-
Q 004614 207 AMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA- 285 (742)
Q Consensus 207 ~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~- 285 (742)
.+.|.---|.+.++-.+..++......++++.. ....+-..++ |+. +.+.+...+++...+++....+.
T Consensus 416 ~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~H-------l~~~vsa~li--Gl~-D~p~~~~ncsw~~~nlv~h~a~a~ 485 (858)
T COG5215 416 EMSDSCLWVKSTTAWCFGAIADHVAMIISPCGH-------LVLEVSASLI--GLM-DCPFRSINCSWRKENLVDHIAKAV 485 (858)
T ss_pred hcccceeehhhHHHHHHHHHHHHHHHhcCcccc-------ccHHHHHHHh--hhh-ccchHHhhhHHHHHhHHHhhhhhh
Confidence 999998889888866666666655555554310 1111111222 654 35666667788888887765433
Q ss_pred ------cccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhh--
Q 004614 286 ------IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQ-- 357 (742)
Q Consensus 286 ------l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~-- 357 (742)
+.||.+.|+..|+..-... .|- ...|.+ +.+|+++++.+..+.+.+.
T Consensus 486 ~~~~S~l~~fY~ai~~~Lv~~t~~~----~Ne---------------~n~R~s------~fsaLgtli~~~~d~V~~~~a 540 (858)
T COG5215 486 REVESFLAKFYLAILNALVKGTELA----LNE---------------SNLRVS------LFSALGTLILICPDAVSDILA 540 (858)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhh----ccc---------------hhHHHH------HHHHHHHHHhhcchhHHHHHH
Confidence 4456566666655443211 010 112322 2345555555443322211
Q ss_pred -----HHHHHHHHHHcc---CCCc-------hHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHH
Q 004614 358 -----LVPHLARLVRSG---IGLN-------TRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFAS 422 (742)
Q Consensus 358 -----lvp~L~~~l~~~---~~~~-------~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~ 422 (742)
...+|-+.+.-. .... ....-+.++..++++++.++.+..+.++..+++.+++-+...+-...
T Consensus 541 ~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV-- 618 (858)
T COG5215 541 GFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDV-- 618 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHH--
Confidence 112222221100 0001 11134566777788888899888888999888888422122221111
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHH
Q 004614 423 ACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELW 502 (742)
Q Consensus 423 al~~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~ 502 (742)
-..+++++...+++|..|.+.|+|++..+++..|..|........
T Consensus 619 -----------------------------------~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglv 663 (858)
T COG5215 619 -----------------------------------YTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLV 663 (858)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHH
Confidence 245666677778999999999999999988777777877777777
Q ss_pred HHhcCCChhhHHhhHHHHHHHHHhhccCC--CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC-------
Q 004614 503 EENTSGDRVTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL------- 573 (742)
Q Consensus 503 ~~~~~~~~~~i~~yl~~il~~l~~~L~~~--sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~------- 573 (742)
.++....+..+.+|.+.++..+.++|.++ ..++|.+...++||++..+|.+|.+|+..++-.+.++-.-..
T Consensus 664 gdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~ 743 (858)
T COG5215 664 GDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYV 743 (858)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeH
Confidence 77766666788999999999999999886 467999999999999999999999999999999887764221
Q ss_pred ----hhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhh--CHHHHHHHHHHHHHHHHHcCCCch-----H
Q 004614 574 ----WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRDPKF-----F 642 (742)
Q Consensus 574 ----~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~--~~~~R~~a~~~Lg~l~~~~~~~~~-----~ 642 (742)
-..++.|..+++.+..+.++.+.. -.|+..+|...+---..|. +..--++|+..+|+++..+|...+ .
T Consensus 744 ~dy~~~~~~~v~~ayVgI~~~~~nr~~~-v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~~~~ 822 (858)
T COG5215 744 DDYRKNAVQLVNCAYVGIGDSSKNRVRS-VLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFGLDE 822 (858)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHH-hhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhccch
Confidence 134778888888888877643321 1234555555444222222 244458999999999999997533 2
Q ss_pred HhHHHHHHhhhc
Q 004614 643 NIIFPLLFEMCG 654 (742)
Q Consensus 643 ~~v~~il~~~~~ 654 (742)
+-+..++..+++
T Consensus 823 dWv~d~l~~~~~ 834 (858)
T COG5215 823 DWVKDFLYGMMK 834 (858)
T ss_pred HHHHHHHHHHHH
Confidence 245566666555
No 11
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.6e-16 Score=170.51 Aligned_cols=473 Identities=17% Similarity=0.132 Sum_probs=321.5
Q ss_pred cchHHHHHHHhhhcCChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHH
Q 004614 57 LSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAM 136 (742)
Q Consensus 57 ~~tyk~l~~lA~~~~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~ 136 (742)
+.+...+.+..+.-.--.+.+-|=+-.+++..-+-|.+-.-=.|..+... ..-+|....++.+|+.-..-|++.||++.
T Consensus 38 l~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~-~~~d~~~~~~~~~~~~~~~tps~~~q~~~ 116 (569)
T KOG1242|consen 38 LEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHL-QIVDPRPISIIEILLEELDTPSKSVQRAV 116 (569)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhc-cccCcchhHHHHHHHHhcCCCcHHHHHHH
Confidence 34444444444333333444445444455443455555543333333332 34456677889999999999999999999
Q ss_pred HHHHHHhccCCHHHHHH-----------------------------------HHH--HHHHHHHHhhCCCC-hhHHHHHH
Q 004614 137 AHIWKSLVADPKRTIDE-----------------------------------HLD--LIFDDLLIQSGSRL-WRSREASC 178 (742)
Q Consensus 137 ~~iw~~lv~d~~~~i~~-----------------------------------~~~--~il~~Ll~~l~~~~-wrvR~aa~ 178 (742)
..|...++...+..... ++. .++..+...+.|+. .+.|+++.
T Consensus 117 ~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~ 196 (569)
T KOG1242|consen 117 STCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAAL 196 (569)
T ss_pred HHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHH
Confidence 98888877432111111 111 35555666666665 46677777
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhc
Q 004614 179 LSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE 258 (742)
Q Consensus 179 ~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~ 258 (742)
.|+.......+ ..++||+..++|.++....|..+.||.||..+.+++...+ .. ..+..++|.++.
T Consensus 197 ~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~----~~---------~aVK~llpsll~- 261 (569)
T KOG1242|consen 197 LAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL----SA---------YAVKLLLPSLLG- 261 (569)
T ss_pred HHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc----Cc---------chhhHhhhhhHH-
Confidence 77777666555 6789999999999999999999999999999999886543 22 244556666664
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCc
Q 004614 259 GILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSP 338 (742)
Q Consensus 259 gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~ 338 (742)
++....|..+..+++.++.++....+.+.-++|+++|.+.+.|.+..|++.+.
T Consensus 262 ~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a--------------------------- 314 (569)
T KOG1242|consen 262 SLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKA--------------------------- 314 (569)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHH---------------------------
Confidence 45556889999999999999999999999999999999999999988876531
Q ss_pred HHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhccccc-ccHHHHHHHHhhhhhccccHHHH
Q 004614 339 MWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK-PYTSMLLRLLFPVVKEEKSAAAK 417 (742)
Q Consensus 339 l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~-p~~~~ll~~Ll~~l~~D~~~~Vr 417 (742)
..+++..+...+++..+..++|.|.+.+..+. ....+|.+-++ .+.|-..+. |-++.+++.+-+++ ++|+...+
T Consensus 315 ~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~--~~~~e~~~~L~--~ttFV~~V~~psLalmvpiL~R~l-~eRst~~k 389 (569)
T KOG1242|consen 315 GIETLLKFGSVIDNPDIQKIIPTLLDALADPS--CYTPECLDSLG--ATTFVAEVDAPSLALMVPILKRGL-AERSTSIK 389 (569)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc--cchHHHHHhhc--ceeeeeeecchhHHHHHHHHHHHH-hhccchhh
Confidence 12456667777888888999999999985531 12235666553 233333333 45778888899999 79999999
Q ss_pred HHHHHHHHHHHhhCC-HHHHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCc
Q 004614 418 RAFASACASVLKYAT-PSQAQKLIEETAALHI-----DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDD 491 (742)
Q Consensus 418 ~~~~~al~~L~~~~~-~~~~~~li~~l~~~~~-----~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~ 491 (742)
+..+..++.+++... +.-+..+++.++.-+. .+++.|..++.+++.+.+..+.. +.+..+|.++....++-
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f~d~~p~l~e~~~~~k 466 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SFDDLIPELSETLTSEK 466 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cccccccHHHHhhccch
Confidence 999999999999985 4456667666655442 36889999999999988777653 33788898877654433
Q ss_pred hHH-HHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHh
Q 004614 492 KYV-SDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIA--SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKE 568 (742)
Q Consensus 492 ~~v-~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~--~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~ 568 (742)
..+ +....+...+.+.+.+ -.++.++++-+..... ...|.+|..-...+.-+-..+|..+.+|+.++++.+.++
T Consensus 467 ~~~~~~g~aq~l~evl~~~~---v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~ 543 (569)
T KOG1242|consen 467 SLVDRSGAAQDLSEVLAGLG---VEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKG 543 (569)
T ss_pred hhhhhHHHhhhHHHHHhccc---chHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHH
Confidence 332 2222233333333321 1233334443333332 235677877777777777778888999999999999999
Q ss_pred cCCCChhhHHHHHHH
Q 004614 569 VPGRLWEGKDALLYA 583 (742)
Q Consensus 569 l~~r~~~~ke~vl~a 583 (742)
+.+..+.|+..++++
T Consensus 544 ~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 544 LADNDEKGRDTALEA 558 (569)
T ss_pred hhhcCCccccchhhh
Confidence 976666677666654
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.76 E-value=4.6e-14 Score=157.06 Aligned_cols=519 Identities=15% Similarity=0.178 Sum_probs=334.6
Q ss_pred cchHHHHHHHhhhcCChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHH
Q 004614 57 LSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAM 136 (742)
Q Consensus 57 ~~tyk~l~~lA~~~~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~ 136 (742)
|++|+.=.+|-..|..+|-.++||....-.+..+ ++.. ...+..++ +++..|++.+.|.|+.|++-+
T Consensus 1 ma~~~~~i~LlekmtssDKDfRfMAtsDLm~eLq--kdsi--------~Ld~dSe~---kvv~~lLklL~D~ngEVQnlA 67 (1233)
T KOG1824|consen 1 MASMQVGINLLEKMTSSDKDFRFMATSDLMTELQ--KDSI--------KLDDDSER---KVVKMLLKLLEDKNGEVQNLA 67 (1233)
T ss_pred CchhHHHHHHHHHccCCCcchhhhhHHHHHHHHH--hhhh--------hccccchh---HHHHHHHHHHhccCcHHHHHH
Confidence 3455544466777888888899998765443222 2211 12223333 455555566799999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCc--------------------------
Q 004614 137 AHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF-------------------------- 190 (742)
Q Consensus 137 ~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~-------------------------- 190 (742)
..|.+.|++ ++-+.++..+.+.|..++-++.-..|.-+..++-..+...++
T Consensus 68 VKClg~lvs---Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe 144 (1233)
T KOG1824|consen 68 VKCLGPLVS---KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQE 144 (1233)
T ss_pred HHHHHHHHh---hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcc
Confidence 999999994 556677888888888885444445566555554444332221
Q ss_pred ---------------------hhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHH
Q 004614 191 ---------------------DQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD 249 (742)
Q Consensus 191 ---------------------~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~ 249 (742)
+-+-++=..|+..+.--+.-....||+-|..++..++..+ ......
T Consensus 145 ~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-------------~~~ly~ 211 (1233)
T KOG1824|consen 145 DVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-------------NRDLYV 211 (1233)
T ss_pred cchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-------------CHHHHH
Confidence 0011111122222222234456677887755555554332 223445
Q ss_pred HHhHHHhhcCCCCC-hHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhH
Q 004614 250 IVLPFLLAEGILSK-VDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLEN 328 (742)
Q Consensus 250 ~lLP~Ll~~gl~~~-~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~ 328 (742)
.++..|+. ||.++ ....-+..+.+|+.+++..|..+..|++.++|.+.+.....+ ++-|+
T Consensus 212 ~li~~Ll~-~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e------------------~~dDE 272 (1233)
T KOG1824|consen 212 ELIEHLLK-GLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIE------------------EDDDE 272 (1233)
T ss_pred HHHHHHHh-ccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccc------------------cCcHH
Confidence 55666654 66653 333345678999999999999999999999999998773221 11122
Q ss_pred HhhhhccCCcHHHHHHHHHhhcChhHH---hhHHHHHHHHHH---------------------------------ccCCC
Q 004614 329 LRISIAKGSPMWDTLDLCINVVDTESL---DQLVPHLARLVR---------------------------------SGIGL 372 (742)
Q Consensus 329 ~r~~~~~~s~l~~al~~~~~~~d~~~l---~~lvp~L~~~l~---------------------------------~~~~~ 372 (742)
+|... .+++|.++.+--.++. ++++..+++.+. ..+.|
T Consensus 273 LrE~~------lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SW 346 (1233)
T KOG1824|consen 273 LREYC------LQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSW 346 (1233)
T ss_pred HHHHH------HHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhH
Confidence 33221 2333333333222111 111111111111 01236
Q ss_pred chHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCC--------HH----------
Q 004614 373 NTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT--------PS---------- 434 (742)
Q Consensus 373 ~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~--------~~---------- 434 (742)
.+|++++.++..++......+..+...+=+.++.-+ +||.+.|+-....+.-.+++..+ ++
T Consensus 347 kVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~Rf-kEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~ 425 (1233)
T KOG1824|consen 347 KVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRF-KEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSD 425 (1233)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHH-HHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccc
Confidence 788899999988876666656556667777788888 78999998777777666666433 11
Q ss_pred --HHH----HHHHHHHHhhcC-CchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchH--H-HHHHHHHHHH
Q 004614 435 --QAQ----KLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY--V-SDLFEELWEE 504 (742)
Q Consensus 435 --~~~----~li~~l~~~~~~-d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~--v-~~~~~~~~~~ 504 (742)
.+. .++.-+.....+ .-..|..+...+..+....|+.+.++.+.++|.+.....|.... . .....-+...
T Consensus 426 ~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~ 505 (1233)
T KOG1824|consen 426 LSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSA 505 (1233)
T ss_pred hHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHH
Confidence 111 122222222222 12246677788889999999999999999999987766663221 2 2333334455
Q ss_pred hcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc-------chhhhHHHHHHHHHHhcCC--CChh
Q 004614 505 NTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-------SLSNYHHVLLESIMKEVPG--RLWE 575 (742)
Q Consensus 505 ~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~-------~~~~~~~~l~p~L~~~l~~--r~~~ 575 (742)
+....+..+.+|.+.+.+.+.....++-+++---|....+.+++.+.. +..+++.+++....++|.. ..-+
T Consensus 506 L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~Dqe 585 (1233)
T KOG1824|consen 506 LISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQE 585 (1233)
T ss_pred HhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHH
Confidence 555556778999999999999999999999998898999999987542 4567899999999999954 3467
Q ss_pred hHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHc
Q 004614 576 GKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (742)
Q Consensus 576 ~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~ 636 (742)
+||.++.+++.++..+++.+. ...+.+++++.+.+ +|..+|-.|++++..++..-
T Consensus 586 VkeraIscmgq~i~~fgD~l~----~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~ 640 (1233)
T KOG1824|consen 586 VKERAISCMGQIIANFGDFLG----NELPRTLPILLERL--GNEITRLTAVKALTLIAMSP 640 (1233)
T ss_pred HHHHHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhcc
Confidence 999999999999999997764 34788888888777 47889999999999987654
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.1e-14 Score=154.52 Aligned_cols=489 Identities=12% Similarity=0.089 Sum_probs=316.7
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHH
Q 004614 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL 197 (742)
Q Consensus 118 ip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L 197 (742)
++.+...=.||++.||.-|...-........+..-.++.++...-+.... ...+|++..--.+.+..+... ..+..
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~--~~~~~~~~~v~~~~~a~~~~~--~d~~~ 94 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH--NDNLRNNVVVLEGTLAFHLQI--VDPRP 94 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch--hHHHhhhhHHHHHHHHHhccc--cCcch
Confidence 33333334899999999998877666543333344455555555554443 457888887777766655432 33344
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH------------HHhhhccccCc-cc------------------hhHh
Q 004614 198 RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSL------------TIRLCDVTLTE-IS------------------DARQ 246 (742)
Q Consensus 198 ~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~------------~~r~~~~~~~~-~~------------------~~~~ 246 (742)
..++..++..++-+.++||++....+..+... +.+.++...-. .. ....
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~ 174 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFG 174 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhh
Confidence 57888888889999999999886665544221 11222211000 00 0001
Q ss_pred HHHHHhHHHhhcCCCC-ChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhh
Q 004614 247 SMDIVLPFLLAEGILS-KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEK 325 (742)
Q Consensus 247 ~l~~lLP~Ll~~gl~~-~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~ 325 (742)
++..+-- .+.+ .....|..++.+.-......|..+.||+.+++|.++..+++..+.+..
T Consensus 175 ~l~~l~~-----ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~--------------- 234 (569)
T KOG1242|consen 175 FLDNLSK-----AIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVRE--------------- 234 (569)
T ss_pred HHHHHHH-----HhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhH---------------
Confidence 1122111 2222 223344456666667777889999999999999999999876554321
Q ss_pred hhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHh
Q 004614 326 LENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLF 405 (742)
Q Consensus 326 ~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll 405 (742)
+..++...++..++....+.++|.++..+... .|+++.++++.++.++.+.+..+.-+++.+++.+.
T Consensus 235 ------------Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~ls 301 (569)
T KOG1242|consen 235 ------------AAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLS 301 (569)
T ss_pred ------------HHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHH
Confidence 11233444455555556678888888888775 89999999999999999999999889999999999
Q ss_pred hhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcCCchhH-HHHHHHHHHHHhhchhhhhhhhhhhhhHhh
Q 004614 406 PVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQ-ISCAILLKSYSSVASDVLSGYHAVIVPVIF 484 (742)
Q Consensus 406 ~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~d~~~r-~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~ 484 (742)
..+ .|..+.||+++..++-.+..+.....+..+++.+.+.+. |+..+ ..+.+.+++- ......-.+-++.++|.+-
T Consensus 302 evl-~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~-dp~~~~~e~~~~L~~t-tFV~~V~~psLalmvpiL~ 378 (569)
T KOG1242|consen 302 EVL-WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALA-DPSCYTPECLDSLGAT-TFVAEVDAPSLALMVPILK 378 (569)
T ss_pred HHH-ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhc-CcccchHHHHHhhcce-eeeeeecchhHHHHHHHHH
Confidence 999 799999999999999999999888889999999999884 44322 2222333221 1112222467888999998
Q ss_pred HhhcCCchHHHH-HHHHHHHH--hcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHH
Q 004614 485 ISRFEDDKYVSD-LFEELWEE--NTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVL 561 (742)
Q Consensus 485 ~~~~d~~~~v~~-~~~~~~~~--~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l 561 (742)
.+..+.+.+.+. ...-+|+- ++.. +..+.+|++++++-+...+.++..++|.-+++++|.+.+..|.. .++.+
T Consensus 379 R~l~eRst~~kr~t~~IidNm~~LveD-p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f~d~ 454 (569)
T KOG1242|consen 379 RGLAERSTSIKRKTAIIIDNMCKLVED-PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SFDDL 454 (569)
T ss_pred HHHhhccchhhhhHHHHHHHHHHhhcC-HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---ccccc
Confidence 888776655433 22222221 2222 46788999999999999999999999999999999999999875 23667
Q ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhC--HHHHHHHHHHHHHHHHHcCC
Q 004614 562 LESIMKEVPGR-LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKI--KKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 562 ~p~L~~~l~~r-~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~--~~~R~~a~~~Lg~l~~~~~~ 638 (742)
.|.+.+.+.+. ..--|....+.+..++.+.+. +....+++.+++...... +.+|-.-++.+.-+=..++.
T Consensus 455 ~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v-------~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~ 527 (569)
T KOG1242|consen 455 IPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV-------EKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGF 527 (569)
T ss_pred ccHHHHhhccchhhhhhHHHhhhHHHHHhcccc-------hHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhH
Confidence 78777777543 333566777777777776542 235555555555543332 23454444444433333321
Q ss_pred ---CchHHhHHHHHHhhhcCcc
Q 004614 639 ---PKFFNIIFPLLFEMCGSTA 657 (742)
Q Consensus 639 ---~~~~~~v~~il~~~~~~~~ 657 (742)
.++.+++.+++....+.+.
T Consensus 528 ~~~~yi~~i~~~~~k~~ad~de 549 (569)
T KOG1242|consen 528 QFQPYIHEILDEFLKGLADNDE 549 (569)
T ss_pred HhHHHHHHHHHHHHHHhhhcCC
Confidence 2345556666666654443
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.71 E-value=1.3e-12 Score=141.96 Aligned_cols=526 Identities=13% Similarity=0.124 Sum_probs=311.9
Q ss_pred chHHHHHHHhhhcCChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHH
Q 004614 58 STYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMA 137 (742)
Q Consensus 58 ~tyk~l~~lA~~~~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~ 137 (742)
+|.+-.-.+|+.+|=|.+.+-+-.+..+...|..|+--.--.-.|+.-.|-..-|||..++.-+=....|.+-.||--..
T Consensus 495 ttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itA 574 (1172)
T KOG0213|consen 495 TTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITA 574 (1172)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHH
Confidence 45566777888899988776665666666569999866655555555444477889887777777778999999999888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHH-HHHHHHHHHHccCCcHHHH
Q 004614 138 HIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL-RRIWTAAFRAMDDIKETVR 216 (742)
Q Consensus 138 ~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L-~~i~~~l~~~l~D~~~~VR 216 (742)
.+..+|......---+.|+.++.-|-+++...--..=.+-..|+|-|+--.. +.+..|+ .+++-.+.+-.+.++++.+
T Consensus 575 lalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd-~eya~yyTrevmlil~rEf~sPDeemk 653 (1172)
T KOG0213|consen 575 LALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMD-AEYASYYTREVMLILIREFGSPDEEMK 653 (1172)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhcccccc-HHHHHHhHHHHHHHHHHhhCCChHHHH
Confidence 8888887643223345688888888888754322223344566777665555 4455554 4677777777787887777
Q ss_pred HHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhc--C--CCCChHHHHHHHHHHHHHHHHhcCcccccchhh
Q 004614 217 TAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE--G--ILSKVDSISKASIGVVMKLVKGAGIAIRPHLSD 292 (742)
Q Consensus 217 ~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~--g--l~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~ 292 (742)
+-. ++.+. +.|+..... ..-+-..++|.++.. | ...+ ...-+....+-..||...|.. +
T Consensus 654 kiv---LKVv~----qcc~t~Gv~---~~y~r~dilp~ff~~fw~rrmA~d-rr~ykqlv~ttv~ia~KvG~~------~ 716 (1172)
T KOG0213|consen 654 KIV---LKVVK----QCCATDGVE---PAYIRFDILPEFFFSFWGRRMALD-RRNYKQLVDTTVEIAAKVGSD------P 716 (1172)
T ss_pred HHH---HHHHH----HHhcccCCC---HHHHhhhhhHHHHhhhhhhhhhcc-ccchhhHHHHHHHHHHHhCch------H
Confidence 665 33332 223322111 112345567766541 1 1111 111122345667888888864 4
Q ss_pred HHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChh-----HHhhHHHHHHHHHH
Q 004614 293 LVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE-----SLDQLVPHLARLVR 367 (742)
Q Consensus 293 Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~-----~l~~lvp~L~~~l~ 367 (742)
++..++.-+.+..++ |-.+ .+++++.++..++.. .-+.++..++-.++
T Consensus 717 ~v~R~v~~lkde~e~---yrkm------------------------~~etv~ri~~~lg~~diderleE~lidgil~Afq 769 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQ---YRKM------------------------VAETVSRIVGRLGAADIDERLEERLIDGILYAFQ 769 (1172)
T ss_pred HHHHHhhhhccccHH---HHHH------------------------HHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 566666555543222 1111 134455555444322 22345666665655
Q ss_pred ccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCC---HHH-HHHHHHHH
Q 004614 368 SGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT---PSQ-AQKLIEET 443 (742)
Q Consensus 368 ~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~---~~~-~~~li~~l 443 (742)
... .+-.--...++.++..+|...+||++.+...++..| +.+.+.||+.++.-++.+..+.+ ++. +..+-.-+
T Consensus 770 eqt--t~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvL 846 (1172)
T KOG0213|consen 770 EQT--TEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVL 846 (1172)
T ss_pred hcc--cchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHH
Confidence 421 111123456778889999999999999999999999 78999999999999998877655 332 22222222
Q ss_pred HHhhcCCchhHHHHHHHHHHHHhhchh----hhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChh--hHHhhH
Q 004614 444 AALHIDDKNSQISCAILLKSYSSVASD----VLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV--TLQLYL 517 (742)
Q Consensus 444 ~~~~~~d~~~r~~a~~~l~~i~~~~~~----~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~--~i~~yl 517 (742)
.+.+. ++.-...+.+++++.....- .+.+-.+.++|-+.--.....+.|.+...++...++-..+. ..+.++
T Consensus 847 yEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM 924 (1172)
T KOG0213|consen 847 YEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM 924 (1172)
T ss_pred HHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH
Confidence 23222 22233445566655433221 12333444444432222223333444333333332221111 112222
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc-ch-hhhH---------------------------HHHHHHHHHh
Q 004614 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SL-SNYH---------------------------HVLLESIMKE 568 (742)
Q Consensus 518 ~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~-~~-~~~~---------------------------~~l~p~L~~~ 568 (742)
. |+=-+++.|.+-.-.+||+|..++|-+++.+|. ++ ...+ =.++|.|...
T Consensus 925 R-IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmne 1003 (1172)
T KOG0213|consen 925 R-ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNE 1003 (1172)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhh
Confidence 1 111122333333344555555555555555553 11 0000 1478888888
Q ss_pred cCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCC
Q 004614 569 VPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 569 l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
+...+-++..+||++|.-+.+-.++.- ..|.-.+.+.+-+.+.|++..+|+.|...+..++--.++
T Consensus 1004 YrtPe~nVQnGVLkalsf~Feyigems----kdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g 1069 (1172)
T KOG0213|consen 1004 YRTPEANVQNGVLKALSFMFEYIGEMS----KDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG 1069 (1172)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHh----hhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC
Confidence 887778899999999999998777532 356788999999999999999999999999888766544
No 15
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=4.3e-13 Score=156.24 Aligned_cols=357 Identities=17% Similarity=0.251 Sum_probs=255.9
Q ss_pred CChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHH
Q 004614 169 RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM 248 (742)
Q Consensus 169 ~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l 248 (742)
..|..|.+|+.+|+.+..... ++++||+.+++|.++|.-=|+...||.|.....++|.. |+. ....+++
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~-~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~------D~k----~~vd~y~ 1037 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAG-EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALIT------DSK----KVVDEYL 1037 (1702)
T ss_pred chhhcccchhhchHHHHHHHH-HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhcc------ChH----HHHHHHH
Confidence 369999999999999988765 89999999999999999999999999998877777642 111 1134566
Q ss_pred HHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcC-cccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhh
Q 004614 249 DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG-IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLE 327 (742)
Q Consensus 249 ~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g-~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d 327 (742)
+.|+.-|+. ++.+..|.||..+|.+|.+|.+.-. +.+...+|++-..+...+.+.+..+++-...
T Consensus 1038 neIl~eLL~-~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~------------- 1103 (1702)
T KOG0915|consen 1038 NEILDELLV-NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADK------------- 1103 (1702)
T ss_pred HHHHHHHHH-hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 666666664 6788899999999999999998643 4577788888888887777665544321100
Q ss_pred HHhhhhccCCcHHHHHHH-HHhhcC-------hhHHhhHHHHHHHHHHccCC---CchHhhHHHHHHHHHHHhccccccc
Q 004614 328 NLRISIAKGSPMWDTLDL-CINVVD-------TESLDQLVPHLARLVRSGIG---LNTRVGVASFISLLVQKIGMDIKPY 396 (742)
Q Consensus 328 ~~r~~~~~~s~l~~al~~-~~~~~d-------~~~l~~lvp~L~~~l~~~~~---~~~r~~a~~~l~~L~~~~g~~l~p~ 396 (742)
...++.+ |++..| .+.+..++|.|..- ++. ...|..|+..+..|+...|..++||
T Consensus 1104 -----------~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~---gims~v~evr~~si~tl~dl~Kssg~~lkP~ 1169 (1702)
T KOG0915|consen 1104 -----------AARALSKLCVRICDVTNGAKGKEALDIILPFLLDE---GIMSKVNEVRRFSIGTLMDLAKSSGKELKPH 1169 (1702)
T ss_pred -----------HHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhcc---CcccchHHHHHHHHHHHHHHHHhchhhhcch
Confidence 1233443 222222 34567788876542 211 1355688999999999999999999
Q ss_pred HHHHHHHHhhhhhccccHHH-------------------HHHH------HHHHHHHHhhCCHHHHHHHHHHHHHhhcC--
Q 004614 397 TSMLLRLLFPVVKEEKSAAA-------------------KRAF------ASACASVLKYATPSQAQKLIEETAALHID-- 449 (742)
Q Consensus 397 ~~~ll~~Ll~~l~~D~~~~V-------------------r~~~------~~al~~L~~~~~~~~~~~li~~l~~~~~~-- 449 (742)
.+++++.++..+ +.-.+.| |..+ ..+++.++.+.....+.++++++.+...+
T Consensus 1170 ~~~LIp~ll~~~-s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV 1248 (1702)
T KOG0915|consen 1170 FPKLIPLLLNAY-SELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV 1248 (1702)
T ss_pred hhHHHHHHHHHc-cccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC
Confidence 999999999987 3222222 3222 25578888888888899999999988753
Q ss_pred CchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCC-ChhhHHhhHHHHHHHHHhhc
Q 004614 450 DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSG-DRVTLQLYLGEIVSLICEGI 528 (742)
Q Consensus 450 d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~-~~~~i~~yl~~il~~l~~~L 528 (742)
.-..|..++.++..+....+..+.||...++..+|.+..|.++.++..|.-...-+..- .+.....++...+. .++
T Consensus 1249 gl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~---~~l 1325 (1702)
T KOG0915|consen 1249 GLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLA---DLL 1325 (1702)
T ss_pred CCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH---HHh
Confidence 44568889999999999899899999999999999998999999988776554433222 12344455554443 333
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc
Q 004614 529 ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV 569 (742)
Q Consensus 529 ~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l 569 (742)
.+.+. .++.+..++.++++...+.++.|...++|...=+.
T Consensus 1326 ~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~ 1365 (1702)
T KOG0915|consen 1326 GKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAM 1365 (1702)
T ss_pred ccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Confidence 33322 23566667777777777788889999999864333
No 16
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=7.7e-12 Score=133.11 Aligned_cols=444 Identities=15% Similarity=0.165 Sum_probs=285.5
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHhccC----CchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhcc
Q 004614 161 DLLIQSGSRLWRSREASCLSLADIIQGR----KFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (742)
Q Consensus 161 ~Ll~~l~~~~wrvR~aa~~Al~~L~~~~----~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~ 236 (742)
.+..+++||.+.-|++|+.-+-.++.+. ..+++...+.++..... ...+..-|+.+ +-.++...+....
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a---~s~~~n~rkGg---LiGlAA~~iaLg~- 76 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYA---YSPHANMRKGG---LIGLAAVAIALGI- 76 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhc---cCcccccccch---HHHHHHHHHHhcc-
Confidence 4667899999999999998887776533 33455555555544332 22233335543 2222222221111
Q ss_pred ccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHh
Q 004614 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHA 316 (742)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a 316 (742)
.++. +++.++|.++. ...+.+..+|-+||+.+-+++|.+..++.+|.+++...+-.+..+.+..+.+-
T Consensus 77 -----~~~~-Y~~~iv~Pv~~-cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~----- 144 (675)
T KOG0212|consen 77 -----KDAG-YLEKIVPPVLN-CFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG----- 144 (675)
T ss_pred -----ccHH-HHHHhhHHHHH-hccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-----
Confidence 1233 78888887775 45667789999999999999999999999999999999888776655443221
Q ss_pred hhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcC-hhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccc
Q 004614 317 ANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD-TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKP 395 (742)
Q Consensus 317 ~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d-~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p 395 (742)
.+-+|.+. .+.+-.-+ .=.++.++|.|-+.+.. .+..+|+.....+..|-...+-.|-.
T Consensus 145 ------aeLLdRLi-------------kdIVte~~~tFsL~~~ipLL~eriy~-~n~~tR~flv~Wl~~Lds~P~~~m~~ 204 (675)
T KOG0212|consen 145 ------AELLDRLI-------------KDIVTESASTFSLPEFIPLLRERIYV-INPMTRQFLVSWLYVLDSVPDLEMIS 204 (675)
T ss_pred ------HHHHHHHH-------------HHhccccccccCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhcCCcHHHHh
Confidence 01222211 11111111 11357888888777754 36778999999998887788888889
Q ss_pred cHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhC-C-HHH--HHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhhchh
Q 004614 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA-T-PSQ--AQKLIEETAALH-IDDKNSQISCAILLKSYSSVASD 470 (742)
Q Consensus 396 ~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~-~-~~~--~~~li~~l~~~~-~~d~~~r~~a~~~l~~i~~~~~~ 470 (742)
|++.++..|++.| .|.+.+||.-.-.+++.+.+-. + +.. ..+.++-+..-. ..++..+..+-.-+..+.+..|.
T Consensus 205 yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 205 YLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred cchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999 7999999988777777765432 1 112 122233333222 24566676777777888888888
Q ss_pred hhhhhhhhhhhHhhHhhcCCch-HHHHHHHH---HHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 004614 471 VLSGYHAVIVPVIFISRFEDDK-YVSDLFEE---LWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKL 546 (742)
Q Consensus 471 ~~~~~~~~vlP~l~~~~~d~~~-~v~~~~~~---~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~L 546 (742)
.+-.|.+.++-.++-+..+.++ .++..... ..-.+++.....-.-.+..|++.+.+++.+..-+.|-++..=+..+
T Consensus 284 ~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 284 DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 8888888888777777766554 34433221 2222222211000133568999999999999999999999999999
Q ss_pred HHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHH
Q 004614 547 GEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAF 626 (742)
Q Consensus 547 a~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~ 626 (742)
-.+.+..+..|..++++.|.+.+.+++-.+-...+.-++.++..-.. +...+++..+....++...-.+..+-
T Consensus 364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~-------~~~~~fl~sLL~~f~e~~~~l~~Rg~ 436 (675)
T KOG0212|consen 364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS-------PNLRKFLLSLLEMFKEDTKLLEVRGN 436 (675)
T ss_pred HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc-------ccHHHHHHHHHHHHhhhhHHHHhhhh
Confidence 99999988889999999999999998876656666666666543221 12344555555554444554555554
Q ss_pred HHHHHHHHHcCCCchHHhHHHHHHh
Q 004614 627 SCLEQVIKAFRDPKFFNIIFPLLFE 651 (742)
Q Consensus 627 ~~Lg~l~~~~~~~~~~~~v~~il~~ 651 (742)
.-+.+++--+..++++..+-.|++.
T Consensus 437 lIIRqlC~lL~aE~IYr~~a~ILe~ 461 (675)
T KOG0212|consen 437 LIIRQLCLLLNAERIYRSIADILER 461 (675)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 4444544444433444444444433
No 17
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.55 E-value=1.1e-10 Score=125.21 Aligned_cols=536 Identities=15% Similarity=0.129 Sum_probs=309.9
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHH
Q 004614 59 TYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAH 138 (742)
Q Consensus 59 tyk~l~~lA~~~~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~ 138 (742)
|.+-.-.+|..+|=+++.+-+=.+..+-..|..|+--.--...|++-.|...-+||..++.-+=.+..|.+-.||--+.+
T Consensus 301 t~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~ 380 (975)
T COG5181 301 TGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTAN 380 (975)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHh
Confidence 44455667777888776554444444444699888666666677777776777887766665555679999999988888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHH
Q 004614 139 IWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTA 218 (742)
Q Consensus 139 iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~a 218 (742)
....+....-.---+.|+.++.-|-++....--.+=.+-..|.|-++--.+++...-|-.++...+++.++.+++.-.+-
T Consensus 381 alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~ 460 (975)
T COG5181 381 ALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKD 460 (975)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchh
Confidence 88888764322334567888877877765431122223344555555445655555667788889999998777654433
Q ss_pred HHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhc-CCC-C-ChHHHHHHHHHHHHHHHHhcCcccccchhhHHH
Q 004614 219 GDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE-GIL-S-KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVS 295 (742)
Q Consensus 219 A~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~-gl~-~-~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~ 295 (742)
. ....+.|+...+ .+....-+.+.|.+++. +-. + .+...-+....+-.-+|+..|. |.++.
T Consensus 461 ~--------l~v~~~C~~v~~--~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~------~~v~~ 524 (975)
T COG5181 461 L--------LVVERICDKVGT--DTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD------PRVSR 524 (975)
T ss_pred H--------HHHHHHHhccCC--CCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC------hHHHH
Confidence 1 223566665432 22445778888988752 110 0 0000001112444456777665 45788
Q ss_pred HHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhc-----ChhHHhhHHHHHHHHHHccC
Q 004614 296 CMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV-----DTESLDQLVPHLARLVRSGI 370 (742)
Q Consensus 296 ~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~-----d~~~l~~lvp~L~~~l~~~~ 370 (742)
.+++-+++...+ |-.++++ +....+..+ |+..-+.+...++..++...
T Consensus 525 kil~~~~De~ep---~r~m~a~------------------------~vsri~~~lg~~~~dErleerl~d~il~Afqeq~ 577 (975)
T COG5181 525 KILEYYSDEPEP---YRKMNAG------------------------LVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD 577 (975)
T ss_pred HHHhhccCCcch---hhhhhhH------------------------HHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc
Confidence 888888763222 2222222 122222222 22222335555555554321
Q ss_pred CCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHh
Q 004614 371 GLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT----PSQAQKLIEETAAL 446 (742)
Q Consensus 371 ~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~----~~~~~~li~~l~~~ 446 (742)
. .... ....++.+....+...+||+..++..+++.| ..+.+.||..++.-+|.|.++.+ .+.+.++-.-+.+.
T Consensus 578 ~-t~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L-~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~ 654 (975)
T COG5181 578 T-TVGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLL-RSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYEN 654 (975)
T ss_pred c-cccE-EEecccceeeehhhccCcchHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHh
Confidence 0 0000 0111222233445567899999999999999 67889999999999988877655 33455554444444
Q ss_pred hcCCchhHHHHHHHHHHHHhhch-hh---hhhhhhhhhhHhh---HhhcCC----------------chH--HHH----H
Q 004614 447 HIDDKNSQISCAILLKSYSSVAS-DV---LSGYHAVIVPVIF---ISRFED----------------DKY--VSD----L 497 (742)
Q Consensus 447 ~~~d~~~r~~a~~~l~~i~~~~~-~~---~~~~~~~vlP~l~---~~~~d~----------------~~~--v~~----~ 497 (742)
+.+ +.-...+.++.+|+.... .. +++-...++|.+. ..+|.. .+. +|+ .
T Consensus 655 lge--~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc 732 (975)
T COG5181 655 LGE--DYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC 732 (975)
T ss_pred cCc--ccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 432 223345556666644321 12 3344444554432 222210 000 111 1
Q ss_pred HH-----HHHHHhc-CCCh---hhHHhh--HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHH
Q 004614 498 FE-----ELWEENT-SGDR---VTLQLY--LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIM 566 (742)
Q Consensus 498 ~~-----~~~~~~~-~~~~---~~i~~y--l~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~ 566 (742)
|. ..|+.-. .+.. +-|..- =.+++.+++.+|...+...|-|.+-+|+-+++.+|.- .++|.|.
T Consensus 733 feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf------sVlP~lm 806 (975)
T COG5181 733 FELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF------SVLPTLM 806 (975)
T ss_pred HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch------hhHHHHH
Confidence 10 1121100 0000 001111 1345666666666666667777777777777666532 4788888
Q ss_pred HhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCCchHHhHH
Q 004614 567 KEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIF 646 (742)
Q Consensus 567 ~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~ 646 (742)
.-+...+-++..+||+|+.-+.+..++.- -.|.-.|.+.+-+.+.|+++.+|+.|...+..++-.-++--..+..+
T Consensus 807 ~dY~TPe~nVQnGvLkam~fmFeyig~~s----~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~I 882 (975)
T COG5181 807 SDYETPEANVQNGVLKAMCFMFEYIGQAS----LDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAI 882 (975)
T ss_pred hcccCchhHHHHhHHHHHHHHHHHHHHHH----HHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHH
Confidence 88887778899999999999998777532 24678899999999999999999999999998887655422233444
Q ss_pred HHHHhh
Q 004614 647 PLLFEM 652 (742)
Q Consensus 647 ~il~~~ 652 (742)
.++.-+
T Consensus 883 HLlNll 888 (975)
T COG5181 883 HLLNLL 888 (975)
T ss_pred HHHHHh
Confidence 444433
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.54 E-value=7.6e-11 Score=145.91 Aligned_cols=536 Identities=14% Similarity=0.123 Sum_probs=314.3
Q ss_pred HHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhh-hhhhHHHhhhcC-CCCHHHHHHHHHHHHHhccCCHHHHH
Q 004614 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTID 152 (742)
Q Consensus 75 lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l-~~lip~L~~~~~-Dp~~~VR~a~~~iw~~lv~d~~~~i~ 152 (742)
.++.++.+.++.. -..++-|+..+..++....+..+..+ ...+|.|...+. ++++.||+.+..+...|+.+.++..+
T Consensus 190 aVp~LV~LLsS~d-~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~ 268 (2102)
T PLN03200 190 GVDILVKLLSSGN-SDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQ 268 (2102)
T ss_pred CHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHH
Confidence 5677888776543 45666777778787765433221111 246788888775 56789999998888888876543322
Q ss_pred HHHH-HHHHHHHHhhCCCCh---------hHHHHHHHHHHHHhccCCchhhhhHHHHHH----------------HHHHH
Q 004614 153 EHLD-LIFDDLLIQSGSRLW---------RSREASCLSLADIIQGRKFDQVGKHLRRIW----------------TAAFR 206 (742)
Q Consensus 153 ~~~~-~il~~Ll~~l~~~~w---------rvR~aa~~Al~~L~~~~~~~~l~~~L~~i~----------------~~l~~ 206 (742)
...+ -.++.|+..+.+++. ..++.|.+||+++..+.. .+-++|.+++ +.+..
T Consensus 269 ~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~--~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 269 AIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS--ALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCch--hhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 2222 234444544443332 348999999999998753 3444543332 22333
Q ss_pred HccCCcHHHHH-HHHHHHHHHHHHHHhhhccccCcc--chhHhHHHH---------------HhHHHhhcCCC-CChHHH
Q 004614 207 AMDDIKETVRT-AGDKLCRSVTSLTIRLCDVTLTEI--SDARQSMDI---------------VLPFLLAEGIL-SKVDSI 267 (742)
Q Consensus 207 ~l~D~~~~VR~-aA~~~~~~l~~~~~r~~~~~~~~~--~~~~~~l~~---------------lLP~Ll~~gl~-~~~~~v 267 (742)
..++..+.++. .....++.|.+++ ....... ....+.+.. ..+.|+ +|. ..+.++
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~Ll----r~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV--~LL~~~~~ev 420 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKLL----KPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLV--GLITMATADV 420 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHHh----CCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhh--hhhccCCHHH
Confidence 34444443331 0012234444433 2111000 001111111 122232 222 256789
Q ss_pred HHHHHHHHHHHHHhcCcccccch-hhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHH
Q 004614 268 SKASIGVVMKLVKGAGIAIRPHL-SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLC 346 (742)
Q Consensus 268 r~~a~~~L~~la~~~g~~l~p~l-p~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~ 346 (742)
|..++.+|..+++...+...-.. -..+|.|++.|++..+....+..+ ++..+
T Consensus 421 Q~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~---------------------------~L~nL 473 (2102)
T PLN03200 421 QEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVA---------------------------LLAIL 473 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH---------------------------HHHHH
Confidence 99999999998865322111000 124788888887654433222111 11111
Q ss_pred HhhcChhH---H-hhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHH--HHHHHHhhhhhccccHHHHHHH
Q 004614 347 INVVDTES---L-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS--MLLRLLFPVVKEEKSAAAKRAF 420 (742)
Q Consensus 347 ~~~~d~~~---l-~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~--~ll~~Ll~~l~~D~~~~Vr~~~ 420 (742)
....++.. . ...+|.|.++++++ +...+..|+-+++.++.. ....+..+. ..++.++..| ++.+..+++.+
T Consensus 474 a~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~A 550 (2102)
T PLN03200 474 TDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLL-KNGGPKGQEIA 550 (2102)
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHH
Confidence 11111100 1 35788899999764 456777888888887652 222222231 4567788888 56678899999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhh--hhhh--hhhhhhHhhHhhcCCchHHH
Q 004614 421 ASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDV--LSGY--HAVIVPVIFISRFEDDKYVS 495 (742)
Q Consensus 421 ~~al~~L~~~~~~~~~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~--~~~~--~~~vlP~l~~~~~d~~~~v~ 495 (742)
+.++..++.....+.+.. +..++. +|+..+..+...++.+....... +... ....+|.+.......++.++
T Consensus 551 a~AL~nLi~~~d~~~I~~----Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ik 626 (2102)
T PLN03200 551 AKTLTKLVRTADAATISQ----LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQ 626 (2102)
T ss_pred HHHHHHHHhccchhHHHH----HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHH
Confidence 999999988776665544 445554 45566666666666664433221 1110 12456766655555667777
Q ss_pred HHHHHHHHHhcCCChhhHH-hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHH-HHHHHHHHhcCCC
Q 004614 496 DLFEELWEENTSGDRVTLQ-LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHH-VLLESIMKEVPGR 572 (742)
Q Consensus 496 ~~~~~~~~~~~~~~~~~i~-~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~-~~~~~~-~l~p~L~~~l~~r 572 (742)
.....+...++.+.+.... ....++++.++..|.+.+.++|+.||.+|+.+....... ...+.. -.+|.|++-++..
T Consensus 627 k~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 627 EKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC
Confidence 7655666666555432222 223456777888889999999999999999999732221 111222 3678899999887
Q ss_pred ChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCCc-h------HHhH
Q 004614 573 LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPK-F------FNII 645 (742)
Q Consensus 573 ~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~~-~------~~~v 645 (742)
..+.++.++.+|..++........ -....+++.+++.++..+.+.|+.|+++|..++...+-++ + .-.+
T Consensus 707 d~~v~e~Al~ALanLl~~~e~~~e----i~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v 782 (2102)
T PLN03200 707 SIEVAEQAVCALANLLSDPEVAAE----ALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTV 782 (2102)
T ss_pred ChHHHHHHHHHHHHHHcCchHHHH----HHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcH
Confidence 788999999999999874431110 0123457788888888899999999999999999887544 2 2256
Q ss_pred HHHHHhhhcCcc
Q 004614 646 FPLLFEMCGSTA 657 (742)
Q Consensus 646 ~~il~~~~~~~~ 657 (742)
.|+++-+...+-
T Consensus 783 ~~l~~~L~~~~~ 794 (2102)
T PLN03200 783 LALVDLLNSTDL 794 (2102)
T ss_pred HHHHHHHhcCCc
Confidence 677766655543
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.54 E-value=1.1e-10 Score=127.27 Aligned_cols=520 Identities=13% Similarity=0.117 Sum_probs=310.0
Q ss_pred CcchHHHHHHHhhhcCChhHHHHHHHHhccccc-hhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHH
Q 004614 56 KLSTYKELCNLANEMGQPDLIYKFMDLANYQVS-LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (742)
Q Consensus 56 ~~~tyk~l~~lA~~~~~p~lv~~fm~l~~~~~~-w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~ 134 (742)
-+++.+-|-.-|.+.|...++.+.+.++-+... =.-|+=-.--+-.|+-+.++...||+.+|+=.+=.+..|++...|-
T Consensus 380 Rk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~ 459 (1172)
T KOG0213|consen 380 RKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARV 459 (1172)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhh
Confidence 467888888899999999999999998855432 1333333344556888888899999999886666778999999886
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCc-H
Q 004614 135 AMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK-E 213 (742)
Q Consensus 135 a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~-~ 213 (742)
.-..|..-|+. ..-|..++..+-..+.+.+.-||+-...|++.+..+.+.+.+.|+|..+ +...+ -
T Consensus 460 egreIisnLak------aaGla~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkav-------c~SkkSw 526 (1172)
T KOG0213|consen 460 EGREIISNLAK------AAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAV-------CGSKKSW 526 (1172)
T ss_pred chHHHHHHHHH------HhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH-------hccccch
Confidence 66667666653 2235555555666678889999999999999999988888777776665 33332 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhH
Q 004614 214 TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDL 293 (742)
Q Consensus 214 ~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~L 293 (742)
.-|..+.+....++-++ -|. .-..+..++.++ +.|+.+++..||..+..++..+++..+ ||=-+-
T Consensus 527 qaRhTgIkivqqIail~--Gcs--------vlphl~~lv~ii-~~gl~De~qkVR~itAlalsalaeaa~----Pygie~ 591 (1172)
T KOG0213|consen 527 QARHTGIKIVQQIAILS--GCS--------VLPHLKPLVKII-EHGLKDEQQKVRTITALALSALAEAAT----PYGIEQ 591 (1172)
T ss_pred hhhchhhHHHHHHHHHh--cch--------hhhhhHHHHHHH-HHhhcccchhhhhHHHHHHHHHHHhcC----CcchHH
Confidence 23555533333332221 110 122344444443 358888889999999999999998776 443223
Q ss_pred HHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCc
Q 004614 294 VSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLN 373 (742)
Q Consensus 294 v~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~ 373 (742)
+...+..|.. -+.+|-++ .+ ..+.+|++-++...|.+.-..+.-.++..+....+.|
T Consensus 592 fDsVlkpLwk-------gir~hrgk------~l----------aafLkAigyliplmd~eya~yyTrevmlil~rEf~sP 648 (1172)
T KOG0213|consen 592 FDSVLKPLWK-------GIRQHRGK------EL----------AAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSP 648 (1172)
T ss_pred HHHHHHHHHH-------HHHHccCh------HH----------HHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCC
Confidence 3333332221 00011110 00 1244567767777776655445444444443334444
Q ss_pred h---HhhHHHHHHHHHHHhccccccc-HHHHHHHHhhhhhccccHHHHHHH---HHHHHHHHhh-CCHHHHHHHHHHHHH
Q 004614 374 T---RVGVASFISLLVQKIGMDIKPY-TSMLLRLLFPVVKEEKSAAAKRAF---ASACASVLKY-ATPSQAQKLIEETAA 445 (742)
Q Consensus 374 ~---r~~a~~~l~~L~~~~g~~l~p~-~~~ll~~Ll~~l~~D~~~~Vr~~~---~~al~~L~~~-~~~~~~~~li~~l~~ 445 (742)
. +.-...++...|..-|.+= .| -..+++.++..+-..+...=|+.| ...-..++.. -.++.+. +++.
T Consensus 649 DeemkkivLKVv~qcc~t~Gv~~-~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~----R~v~ 723 (1172)
T KOG0213|consen 649 DEEMKKIVLKVVKQCCATDGVEP-AYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS----RVVL 723 (1172)
T ss_pred hHHHHHHHHHHHHHHhcccCCCH-HHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH----HHhh
Confidence 3 3333444433332222211 12 335666666665322222112222 2222233322 2233333 3333
Q ss_pred hh-cCCchhHHHHHHHHHHHHhhchh-hhh-hhhhhhhhHhhHhhcC--CchHH-HHHHHHHHHHhcCCChhhHHhhHHH
Q 004614 446 LH-IDDKNSQISCAILLKSYSSVASD-VLS-GYHAVIVPVIFISRFE--DDKYV-SDLFEELWEENTSGDRVTLQLYLGE 519 (742)
Q Consensus 446 ~~-~~d~~~r~~a~~~l~~i~~~~~~-~~~-~~~~~vlP~l~~~~~d--~~~~v-~~~~~~~~~~~~~~~~~~i~~yl~~ 519 (742)
-| .+.+..|.-++.++..+....|. .+. .....++--++.+.+. .++.| -..|-.+.+++. .-+++|++.
T Consensus 724 ~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg----~r~kpylpq 799 (1172)
T KOG0213|consen 724 DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALG----GRVKPYLPQ 799 (1172)
T ss_pred hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHh----hccccchHH
Confidence 33 34455677666777666554432 222 2334445555555433 22222 234444555543 246899999
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcC
Q 004614 520 IVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE 598 (742)
Q Consensus 520 il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~-~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~ 598 (742)
|+..++..|.+.+.++|++||..++.++..+..- =...+..+--.|.+.+.+...++--.||.|+.+++...+-. ..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~--km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT--KM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc--cc
Confidence 9999999999999999999999999999765431 01124455566788888877888889999999998765421 11
Q ss_pred CCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCC
Q 004614 599 DPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 599 ~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
.+=...|++.+.--++.+..++..+++..+|.++..-+.
T Consensus 878 -~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 878 -TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred -CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 122455556666666777788999999999998876543
No 20
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=8.8e-12 Score=132.69 Aligned_cols=420 Identities=17% Similarity=0.185 Sum_probs=282.6
Q ss_pred chhhhhhHHhhHHHHHHHhhhhh-chhhhhhhHHHh-hhcCCCCHHHHHHHH----HHHHHhccCCHHHHHHHHHHHHHH
Q 004614 88 SLNSKRGAAFGFSKIAKQAGDAL-KPHLRLLIPKLV-RFQYDPDKNVQDAMA----HIWKSLVADPKRTIDEHLDLIFDD 161 (742)
Q Consensus 88 ~w~~r~~A~~~l~~i~~~~~~~l-~~~l~~lip~L~-~~~~Dp~~~VR~a~~----~iw~~lv~d~~~~i~~~~~~il~~ 161 (742)
.+..||+|+.-+.++..++-..= -..+++++..|. .|.+.|+.+-|+... .+--++-.+ . ..|...+++-
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~---~-~~Y~~~iv~P 88 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIK---D-AGYLEKIVPP 88 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccc---c-HHHHHHhhHH
Confidence 36789999999999988772211 135667777555 377888887777431 111122222 2 2399999999
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCcc
Q 004614 162 LLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEI 241 (742)
Q Consensus 162 Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~ 241 (742)
++.+++|.+-++|.-||.++-++...+. ..+-.|..+|+..+-++..|.+.+||.+| ++++.+.+-.+ .+.
T Consensus 89 v~~cf~D~d~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIV---te~---- 159 (675)
T KOG0212|consen 89 VLNCFSDQDSQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIV---TES---- 159 (675)
T ss_pred HHHhccCccceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhc---ccc----
Confidence 9999999999999999999999988776 56778999999999999999999999987 44555443221 111
Q ss_pred chhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCc
Q 004614 242 SDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGI 321 (742)
Q Consensus 242 ~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~ 321 (742)
+..-.++.++|.|-++ +-..++..|.+.+.-|.-+-...+-.+-.|+|.+.+-|++.+++..+++...-....+
T Consensus 160 -~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~---- 233 (675)
T KOG0212|consen 160 -ASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS---- 233 (675)
T ss_pred -ccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH----
Confidence 1133678899998764 3334678899998888777777777788999999999999999876655421110000
Q ss_pred chhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHH
Q 004614 322 QTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLL 401 (742)
Q Consensus 322 ~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll 401 (742)
+-+.+. +++|.. + ..++.++.+..-+.++ ..-.+.-+...+.+++.-.|..+-+|..+++
T Consensus 234 --~fL~eI-----~s~P~s---------~---d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~s~il 293 (675)
T KOG0212|consen 234 --EFLAEI-----RSSPSS---------M---DYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYLSGIL 293 (675)
T ss_pred --HHHHHH-----hcCccc---------c---CcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhhhhhh
Confidence 011111 111110 0 1234444444444432 1123445678888889999999999999999
Q ss_pred HHHhhhhhccccH-HHHHHHHHHHHHHHhhCCHHHH------HHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhh
Q 004614 402 RLLFPVVKEEKSA-AAKRAFASACASVLKYATPSQA------QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLS 473 (742)
Q Consensus 402 ~~Ll~~l~~D~~~-~Vr~~~~~al~~L~~~~~~~~~------~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~ 473 (742)
..+++.+ .|..+ .++..+...-+.+.+..+.+.. ..+++-+...++ +.++.|.++-.-+.-+....|..+-
T Consensus 294 ~~iLpc~-s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~ 372 (675)
T KOG0212|consen 294 TAILPCL-SDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL 372 (675)
T ss_pred hhcccCC-CCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh
Confidence 9999999 44444 4555544444456665554332 356666666554 3456788887777778788888888
Q ss_pred hhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChh-hHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhC
Q 004614 474 GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV-TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILG 551 (742)
Q Consensus 474 ~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~-~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g 551 (742)
.|.+.+.+.++....|.+++|....-++...++.+... ..++++.++++++.+ + .--++.-+..-+..+|.-+.
T Consensus 373 ~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e---~-~~~l~~Rg~lIIRqlC~lL~ 447 (675)
T KOG0212|consen 373 VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKE---D-TKLLEVRGNLIIRQLCLLLN 447 (675)
T ss_pred hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhh---h-hHHHHhhhhHHHHHHHHHhC
Confidence 89999999999988998888876666677666655332 456777777766654 2 22345556666777776554
No 21
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-10 Score=133.45 Aligned_cols=498 Identities=14% Similarity=0.173 Sum_probs=308.7
Q ss_pred CcchHHHHHHHhhhcCCh---hHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHH
Q 004614 56 KLSTYKELCNLANEMGQP---DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNV 132 (742)
Q Consensus 56 ~~~tyk~l~~lA~~~~~p---~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~V 132 (742)
-..+.+.+.++|..+|++ .-..+|..-+..+ .-....+++..||.+....+ ...|-.-+.|.|.....+..-.|
T Consensus 99 r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~-~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~~~eet~v 175 (759)
T KOG0211|consen 99 RLNSGRKLSNLALALGVERTRLELIPFLTEAEDD-EDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLATVEETGV 175 (759)
T ss_pred hhhhhccccchhhhcccchhhhhhhhHHHHhccc-hhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhhHHHHHHH
Confidence 356777888999999998 4455555555432 34556788889998776542 22233445666665577888889
Q ss_pred HHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccC
Q 004614 133 QDAMAHIWKSLV-ADPKRTIDEHLDLIFDDLLIQSGSRLWRS-REASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD 210 (742)
Q Consensus 133 R~a~~~iw~~lv-~d~~~~i~~~~~~il~~Ll~~l~~~~wrv-R~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D 210 (742)
|+........+. .-++....+|+-+++..+ ...+|+. |-++|-.++...-..+.+.+.. ++.+...+..+|
T Consensus 176 r~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l----~~~d~~~sr~sacglf~~~~~~~~~~~vk~---elr~~~~~lc~d 248 (759)
T KOG0211|consen 176 REKAVESLLKVAVGLPKEKLREHLVPLLKRL----ATGDWFQSRLSACGLFGKLYVSLPDDAVKR---ELRPIVQSLCQD 248 (759)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHc----cchhhhhcchhhhhhhHHhccCCChHHHHH---HHHHHHHhhccc
Confidence 998866555543 344444456666644433 3337866 7788888888876665455666 555555556899
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCC-ChHHHHHHHHHHHHHHHHhcCcccccc
Q 004614 211 IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS-KVDSISKASIGVVMKLVKGAGIAIRPH 289 (742)
Q Consensus 211 ~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~-~~~~vr~~a~~~L~~la~~~g~~l~p~ 289 (742)
..+.||.++++.+..+++.... ....+.++|.+. +|.. +.+.||..|.+.+..+.+...... +.
T Consensus 249 ~~~~Vr~~~a~~l~~~a~~~~~------------~~~~s~v~~~~~--~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~ 313 (759)
T KOG0211|consen 249 DTPMVRRAVASNLGNIAKVLES------------EIVKSEVLPTLI--QLLRDDQDSVREAAVESLVSLLDLLDDDD-DV 313 (759)
T ss_pred cchhhHHHHHhhhHHHHHHHHH------------HHHHhhccHHHh--hhhhcchhhHHHHHHHHHHHHHHhcCCch-hh
Confidence 9999999998888877766522 123455666665 3443 567899999999888887655432 33
Q ss_pred hhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHcc
Q 004614 290 LSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSG 369 (742)
Q Consensus 290 lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~ 369 (742)
...+.+.+++...+. .+.+.|..
T Consensus 314 ~~~~~~~l~~~~~d~-~~~v~~~~-------------------------------------------------------- 336 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDG-SWRVSYMV-------------------------------------------------------- 336 (759)
T ss_pred hhhhhHHHHHHhcCh-hHHHHHHH--------------------------------------------------------
Confidence 334555555554432 22322221
Q ss_pred CCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHH-----HHHHHHHHHH
Q 004614 370 IGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-----QAQKLIEETA 444 (742)
Q Consensus 370 ~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~-----~~~~li~~l~ 444 (742)
......|...+|.. ..-..........+ .|...++|.+.+.-...+..+.+.+ ..+.+++.+.
T Consensus 337 ---------~~~~~~L~~~~~~~--~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~ 404 (759)
T KOG0211|consen 337 ---------ADKFSELSSAVGPS--ATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQ 404 (759)
T ss_pred ---------hhhhhhHHHHhccc--cCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHH
Confidence 11111222222220 01111222222333 3444555555555555555444421 1222334444
Q ss_pred Hhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHH--hcCCChhhHHhhHHHHH
Q 004614 445 ALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEE--NTSGDRVTLQLYLGEIV 521 (742)
Q Consensus 445 ~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~--~~~~~~~~i~~yl~~il 521 (742)
.+.. .++..|...+..+..+....| ...-...++|.......|....|+....+.... .+.. ..++..+.+..+
T Consensus 405 ~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~-v~g~~~~s~slL 481 (759)
T KOG0211|consen 405 VLVLDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVND-VIGISTVSNSLL 481 (759)
T ss_pred HHHhcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccC-cccchhhhhhhh
Confidence 3332 234445544444444443333 345567778877766777888887654422111 1222 134566777888
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCC
Q 004614 522 SLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPT 601 (742)
Q Consensus 522 ~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~ 601 (742)
+.+...-.+..|.+|.+.-..+-.++...|..| +-+.+-+.+...+.++..+.|+++...+..++..+| .-|.
T Consensus 482 p~i~el~~d~~wRvr~ail~~ip~la~q~~~~~--~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~---- 554 (759)
T KOG0211|consen 482 PAIVELAEDLLWRVRLAILEYIPQLALQLGVEF--FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWA---- 554 (759)
T ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH--hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchh----
Confidence 888888788899999999999999998888543 234566777777788788899999999999999887 4443
Q ss_pred chHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhhhcCccc
Q 004614 602 TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTAL 658 (742)
Q Consensus 602 ~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~~~~~~~ 658 (742)
...+++.+.....+.+..+|+..+.++..++.+++.+-+...+.|++..+..+..+
T Consensus 555 -~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~va 610 (759)
T KOG0211|consen 555 -RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVA 610 (759)
T ss_pred -HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCch
Confidence 66777777777666689999999999999999997654555777888887777653
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.45 E-value=4.6e-09 Score=120.72 Aligned_cols=469 Identities=14% Similarity=0.102 Sum_probs=296.4
Q ss_pred hhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhh
Q 004614 114 LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQV 193 (742)
Q Consensus 114 l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l 193 (742)
+..+++.+.++...++..+|+-..-.|..+....++ .+.-+...+.+.+.+++.-+|..|..+++.+. . +++
T Consensus 40 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~-~~~ 111 (526)
T PF01602_consen 40 ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIR---T-PEM 111 (526)
T ss_dssp -GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----S-HHH
T ss_pred CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---c-cch
Confidence 346788888888999999999988888888765433 44556777888899999999999988888875 2 444
Q ss_pred hhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHH
Q 004614 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIG 273 (742)
Q Consensus 194 ~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~ 273 (742)
.+ .+.+.+.+.+.|.++.||+.|..++..+.+.. +. ..... ++|.+.. -+.+.++.|+..|+.
T Consensus 112 ~~---~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-----p~-----~~~~~---~~~~l~~-lL~d~~~~V~~~a~~ 174 (526)
T PF01602_consen 112 AE---PLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-----PD-----LVEDE---LIPKLKQ-LLSDKDPSVVSAALS 174 (526)
T ss_dssp HH---HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-----HC-----CHHGG---HHHHHHH-HTTHSSHHHHHHHHH
T ss_pred hh---HHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-----HH-----HHHHH---HHHHHhh-hccCCcchhHHHHHH
Confidence 44 56667777789999999999966665553321 11 11111 3444433 134457889999999
Q ss_pred HHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchh-------hhhHHhhh--hccCCcHHHHHH
Q 004614 274 VVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTE-------KLENLRIS--IAKGSPMWDTLD 344 (742)
Q Consensus 274 ~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~-------~~d~~r~~--~~~~s~l~~al~ 344 (742)
++..+ +...+...+.++.++..|.+.+....|+..-.+-.....+..... -++..... ....+...+++.
T Consensus 175 ~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~ 253 (526)
T PF01602_consen 175 LLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIR 253 (526)
T ss_dssp HHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99988 332222236677788888877777777754333222222222111 11111110 111223455666
Q ss_pred HHHhhcChh-HHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHH
Q 004614 345 LCINVVDTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASA 423 (742)
Q Consensus 345 ~~~~~~d~~-~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~a 423 (742)
.+....... .+...++.|.+++.+ .+.+.|..+.+.+..++...+..+. +.. ..+..+..+++..||......
T Consensus 254 ~i~~l~~~~~~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~~~~~~~v~-~~~----~~~~~l~~~~d~~Ir~~~l~l 327 (526)
T PF01602_consen 254 LIIKLSPSPELLQKAINPLIKLLSS-SDPNVRYIALDSLSQLAQSNPPAVF-NQS----LILFFLLYDDDPSIRKKALDL 327 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHCCHCHHHHG-THH----HHHHHHHCSSSHHHHHHHHHH
T ss_pred HHHHhhcchHHHHhhHHHHHHHhhc-ccchhehhHHHHHHHhhcccchhhh-hhh----hhhheecCCCChhHHHHHHHH
Confidence 555544433 367789999999874 3556777888888777666533332 211 122233247788898877655
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhh-c-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHH
Q 004614 424 CASVLKYATPSQAQKLIEETAALH-I-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEEL 501 (742)
Q Consensus 424 l~~L~~~~~~~~~~~li~~l~~~~-~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~ 501 (742)
+..+ ++++.+..+++.+.... . .|++.|..+...++.++...+.....+.+.++.++-.....-..++...+.++
T Consensus 328 L~~l---~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~l 404 (526)
T PF01602_consen 328 LYKL---ANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDL 404 (526)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHH
T ss_pred Hhhc---ccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHH
Confidence 5544 56677777777777766 3 36778888888888888777777777777777665432111112222222233
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHhhccC-CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHH
Q 004614 502 WEENTSGDRVTLQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDAL 580 (742)
Q Consensus 502 ~~~~~~~~~~~i~~yl~~il~~l~~~L~~-~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~v 580 (742)
... .++ . -..++..+.+.+.+ .+..+++.++-.+|+-+..... .. ..+.++..+.+.+......+|..+
T Consensus 405 l~~-~~~----~---~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~i 474 (526)
T PF01602_consen 405 LSN-NPE----L---REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQI 474 (526)
T ss_dssp HHH-STT----T---HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred hhc-Chh----h---hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHH
Confidence 222 111 1 12344445555554 4567899999999998877655 11 466788888888877667899999
Q ss_pred HHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHh--hhCHHHHHHHHHHHHHHH
Q 004614 581 LYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR--KKIKKYREAAFSCLEQVI 633 (742)
Q Consensus 581 l~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~--~~~~~~R~~a~~~Lg~l~ 633 (742)
+.++..+....+. ....+.+.+.+.+..+ +.+.++|+.|...+.-+-
T Consensus 475 lt~~~Kl~~~~~~------~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 475 LTALAKLFKRNPE------NEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHHSCS------TTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCc------hhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 9999999876542 1235688888888887 679999999998877653
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.40 E-value=5.9e-09 Score=129.56 Aligned_cols=468 Identities=13% Similarity=0.093 Sum_probs=278.7
Q ss_pred hhHHHhhhcCCCCHHH-HHHHHHHHHHhccCCHHHHHHH--HHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhh
Q 004614 117 LIPKLVRFQYDPDKNV-QDAMAHIWKSLVADPKRTIDEH--LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQV 193 (742)
Q Consensus 117 lip~L~~~~~Dp~~~V-R~a~~~iw~~lv~d~~~~i~~~--~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l 193 (742)
+.+.|...+.+++|.+ +..+..+...++.|+ ...+. .....+-|+..+...+..+|+.+|+++..+..+.. +..
T Consensus 363 v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~--~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~ 439 (2102)
T PLN03200 363 IEQILVKLLKPRDTKLVQERIIEALASLYGNA--YLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKG-GLW 439 (2102)
T ss_pred cHHHHHHHhCCCCCchhHHHHHHHHHHhcCCh--HHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHH
Confidence 3455555555555543 544555555555553 11111 12334445555555667899999999999987643 211
Q ss_pred hhHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhH-HHHHhHHHhhcCCCCChHHHHHHH
Q 004614 194 GKHL-RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQS-MDIVLPFLLAEGILSKVDSISKAS 271 (742)
Q Consensus 194 ~~~L-~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~-l~~lLP~Ll~~gl~~~~~~vr~~a 271 (742)
.-.. ...++.+.+.|...++.+|+.|..++..++... + .....+ -...+|.|.+. |.+.+..+|+.|
T Consensus 440 ~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n----d------enr~aIieaGaIP~LV~L-L~s~~~~iqeeA 508 (2102)
T PLN03200 440 EALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV----D------ESKWAITAAGGIPPLVQL-LETGSQKAKEDS 508 (2102)
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----H------HHHHHHHHCCCHHHHHHH-HcCCCHHHHHHH
Confidence 1111 124667777788888999999866665553211 0 001111 12346666642 345678999999
Q ss_pred HHHHHHHHHhcCcccccch--hhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhh
Q 004614 272 IGVVMKLVKGAGIAIRPHL--SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV 349 (742)
Q Consensus 272 ~~~L~~la~~~g~~l~p~l--p~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~ 349 (742)
+++|++++.. .+..+..+ ...+|.|++.|.+.++..+.. ...+|..+...
T Consensus 509 awAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~---------------------------Aa~AL~nLi~~ 560 (2102)
T PLN03200 509 ATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEI---------------------------AAKTLTKLVRT 560 (2102)
T ss_pred HHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH---------------------------HHHHHHHHHhc
Confidence 9999999963 22333333 246788888887654332110 12345555554
Q ss_pred cChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhccc-cc-c--cHHHHHHHHhhhhhccccHHHHHHHHHHHH
Q 004614 350 VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMD-IK-P--YTSMLLRLLFPVVKEEKSAAAKRAFASACA 425 (742)
Q Consensus 350 ~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~-l~-p--~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~ 425 (742)
-+.+.+ +.+..++... +...+..+.++++.++...... +. . -...-++.|...+ +..+..+++.++.++.
T Consensus 561 ~d~~~I----~~Lv~LLlsd-d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL-~sgs~~ikk~Aa~iLs 634 (2102)
T PLN03200 561 ADAATI----SQLTALLLGD-LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL-SSSKEETQEKAASVLA 634 (2102)
T ss_pred cchhHH----HHHHHHhcCC-ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 444433 4455555432 3355556777776654422111 00 0 0124567778878 5678899999999999
Q ss_pred HHHhhCCHHH----HHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhh-hhhhh-hhhhhHhhHhhcCCchHHHHHH
Q 004614 426 SVLKYATPSQ----AQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDV-LSGYH-AVIVPVIFISRFEDDKYVSDLF 498 (742)
Q Consensus 426 ~L~~~~~~~~----~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~-~~~~~-~~vlP~l~~~~~d~~~~v~~~~ 498 (742)
.++...++.. ....++.++.++. .+.+.+..++.++..+++...+. -..+. .-.+|.+.....+.+.++++..
T Consensus 635 nL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~A 714 (2102)
T PLN03200 635 DIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQA 714 (2102)
T ss_pred HHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHH
Confidence 9987555421 2345677777775 56677888889999888643221 11222 3467777776777777887766
Q ss_pred HHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc--chhhhHH--HHHHHHHHhcCCCCh
Q 004614 499 EELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE--SLSNYHH--VLLESIMKEVPGRLW 574 (742)
Q Consensus 499 ~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~--~~~~~~~--~l~p~L~~~l~~r~~ 574 (742)
...+..+...+.....-.-..+++.+.+.|.+.+.+.|++|+.+|..|+..... .+..+.. -.+..|..-|++-..
T Consensus 715 l~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~ 794 (2102)
T PLN03200 715 VCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDL 794 (2102)
T ss_pred HHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCc
Confidence 666666655432221112245678888899999999999999999999987552 2323221 234455666665544
Q ss_pred hhHH--HHHHHHHHHHhhcccccCc---------CCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcC
Q 004614 575 EGKD--ALLYAIGSISTSCHKDISA---------EDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (742)
Q Consensus 575 ~~ke--~vl~aL~~l~~~~~~~~~~---------~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~ 637 (742)
+... .++++|+.+.+. +.+... +.+.-...++.. +...++.+..+|+..|.++++-++
T Consensus 795 ~~~~~~~al~~l~~l~~~-~~~~~~~~~~~~~~~e~p~~l~~l~~~----l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 795 DSSATSEALEALALLART-KGGANFSHPPWAVLAEVPSSLEPLVRC----LAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred chhhHHHHHHHHHHHHhh-cccCCCCCCchhhHHhccCchHHHHHH----HHcCChHHHHHHHHHHHHHhccCh
Confidence 4444 488899888873 222211 112223444444 455789999999999999988766
No 24
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.36 E-value=1.2e-09 Score=125.28 Aligned_cols=449 Identities=14% Similarity=0.090 Sum_probs=276.3
Q ss_pred chHHHHHHHhhhcCChhHHHHHHHHhccc--cchhhhhhHHhhHHHHHHH-hh-hhhchhhhhhhHHHhhhcCCCCHHHH
Q 004614 58 STYKELCNLANEMGQPDLIYKFMDLANYQ--VSLNSKRGAAFGFSKIAKQ-AG-DALKPHLRLLIPKLVRFQYDPDKNVQ 133 (742)
Q Consensus 58 ~tyk~l~~lA~~~~~p~lv~~fm~l~~~~--~~w~~r~~A~~~l~~i~~~-~~-~~l~~~l~~lip~L~~~~~Dp~~~VR 133 (742)
.+-.+++.++..+..+.+.-.|.++..+. .+|+++|..++|+...+-. .. +.++..+..++-.| ..|.+|+||
T Consensus 178 k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr 254 (759)
T KOG0211|consen 178 KAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVR 254 (759)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhH
Confidence 34557888888888888888888877654 3599999999888885443 33 45555555555554 899999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcH
Q 004614 134 DAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE 213 (742)
Q Consensus 134 ~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~ 213 (742)
+++..=.+.+.+--+. ...-..+++....-..|.+--||++|..++..+.+-...+. +....+.+.++...+|...
T Consensus 255 ~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~ 330 (759)
T KOG0211|consen 255 RAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSW 330 (759)
T ss_pred HHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhH
Confidence 9986644444321100 11123344444455555556778887777777766443332 4455666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHh-------------hhccccC-----------------c-cchhHhHHHHHhHHHhhcCCCC
Q 004614 214 TVRTAGDKLCRSVTSLTIR-------------LCDVTLT-----------------E-ISDARQSMDIVLPFLLAEGILS 262 (742)
Q Consensus 214 ~VR~aA~~~~~~l~~~~~r-------------~~~~~~~-----------------~-~~~~~~~l~~lLP~Ll~~gl~~ 262 (742)
.||...+..+..+...... .+..... + .....-..+.++|.+... +.+
T Consensus 331 ~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l-v~d 409 (759)
T KOG0211|consen 331 RVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL-VLD 409 (759)
T ss_pred HHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH-Hhc
Confidence 7777766655554332211 0000000 0 000111345567877642 345
Q ss_pred ChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHH
Q 004614 263 KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDT 342 (742)
Q Consensus 263 ~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~a 342 (742)
.+..||.+....++.++...|+. .-++.+.|.++..+++..+.+..-+..+.. -
T Consensus 410 ~~~~vr~a~a~~~~~~~p~~~k~--~ti~~llp~~~~~l~de~~~V~lnli~~ls------------------------~ 463 (759)
T KOG0211|consen 410 NALHVRSALASVITGLSPILPKE--RTISELLPLLIGNLKDEDPIVRLNLIDKLS------------------------L 463 (759)
T ss_pred ccchHHHHHhccccccCccCCcC--cCccccChhhhhhcchhhHHHHHhhHHHHH------------------------H
Confidence 67889988888888777777643 445556777777777655544322111110 1
Q ss_pred HHHHHhhcChhHH-hhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHH
Q 004614 343 LDLCINVVDTESL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (742)
Q Consensus 343 l~~~~~~~d~~~l-~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~ 421 (742)
++.+.+..+.+.. +.++|.+....... .|+.|.+...++..++...|..| +-+++-+.+..++ .|...+||+.++
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~~~~--~~~~~~~l~~~~l-~d~v~~Ir~~aa 539 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLGVEF--FDEKLAELLRTWL-PDHVYSIREAAA 539 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhhhHH--hhHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 1222233333322 45777776665443 57778899999999999998555 4566777788888 678889999999
Q ss_pred HHHHHHHhhCCH-HHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHH
Q 004614 422 SACASVLKYATP-SQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFE 499 (742)
Q Consensus 422 ~al~~L~~~~~~-~~~~~li~~l~~~~~~-d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~ 499 (742)
..+-.++...+. -.....++++...... +.-.|.+....+..++...+..+ +...++|.+.....|+.++||--..
T Consensus 540 ~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nva 617 (759)
T KOG0211|consen 540 RNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVA 617 (759)
T ss_pred HHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHH
Confidence 999888877773 2356667776666543 25678888888888888777543 4677899998889999999986555
Q ss_pred HHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 004614 500 ELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGE 548 (742)
Q Consensus 500 ~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~ 548 (742)
+.+..+.+.... ...-..+.++....-.|++.++|-.|..+.+.+..
T Consensus 618 k~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 618 KHLPKILKLLDE--SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHHhhcch--HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 555554443211 12223344444444456655555555555555443
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.35 E-value=1.1e-08 Score=117.50 Aligned_cols=418 Identities=12% Similarity=0.110 Sum_probs=261.3
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccC
Q 004614 131 NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD 210 (742)
Q Consensus 131 ~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D 210 (742)
.-++++..+......+. .+...+..+++.+.+++.+.|.-+-.++..+....+ + .+.-+...+.+-+.+
T Consensus 22 ~~~~~l~kli~~~~~G~------~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-~----~~~l~~n~l~kdl~~ 90 (526)
T PF01602_consen 22 KKKEALKKLIYLMMLGY------DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDP-E----LLILIINSLQKDLNS 90 (526)
T ss_dssp HHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH-H----HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCC------CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch-h----HHHHHHHHHHHhhcC
Confidence 34445555555444321 233455557788889999999999999988876544 2 333466677777889
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccch
Q 004614 211 IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHL 290 (742)
Q Consensus 211 ~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~l 290 (742)
.++.+|..| +++++.+. ..++.+.++|.+.. .+.++++.||+.|+.++..+.+..++.+.+.
T Consensus 91 ~n~~~~~lA---L~~l~~i~-------------~~~~~~~l~~~v~~-ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~- 152 (526)
T PF01602_consen 91 PNPYIRGLA---LRTLSNIR-------------TPEMAEPLIPDVIK-LLSDPSPYVRKKAALALLKIYRKDPDLVEDE- 152 (526)
T ss_dssp SSHHHHHHH---HHHHHHH--------------SHHHHHHHHHHHHH-HHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-
T ss_pred CCHHHHHHH---Hhhhhhhc-------------ccchhhHHHHHHHH-HhcCCchHHHHHHHHHHHHHhccCHHHHHHH-
Confidence 999999998 55554433 23466667777654 4566789999999999999999866544332
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcCh---hHHhhHHHHHHHHHH
Q 004614 291 SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT---ESLDQLVPHLARLVR 367 (742)
Q Consensus 291 p~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~---~~l~~lvp~L~~~l~ 367 (742)
+++.+.+++.+..+.++... ..++..+ +.-+. ..++.++..|.+.+.
T Consensus 153 --~~~~l~~lL~d~~~~V~~~a---------------------------~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~ 202 (526)
T PF01602_consen 153 --LIPKLKQLLSDKDPSVVSAA---------------------------LSLLSEI-KCNDDSYKSLIPKLIRILCQLLS 202 (526)
T ss_dssp --HHHHHHHHTTHSSHHHHHHH---------------------------HHHHHHH-HCTHHHHTTHHHHHHHHHHHHHT
T ss_pred --HHHHHhhhccCCcchhHHHH---------------------------HHHHHHH-ccCcchhhhhHHHHHHHhhhccc
Confidence 57778888876665543211 1122222 11111 123444444444432
Q ss_pred ccCCCchHhhHHHHHHHHHHHhcccccccH--HHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCH-HHHHHHHHHHH
Q 004614 368 SGIGLNTRVGVASFISLLVQKIGMDIKPYT--SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP-SQAQKLIEETA 444 (742)
Q Consensus 368 ~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~--~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~-~~~~~li~~l~ 444 (742)
....| ..+...+++ ..+...-.... ..+++.+...+ +..++.|.-+++.++..+ .+. ..+...++.+.
T Consensus 203 ~~~~~-~q~~il~~l----~~~~~~~~~~~~~~~~i~~l~~~l-~s~~~~V~~e~~~~i~~l---~~~~~~~~~~~~~L~ 273 (526)
T PF01602_consen 203 DPDPW-LQIKILRLL----RRYAPMEPEDADKNRIIEPLLNLL-QSSSPSVVYEAIRLIIKL---SPSPELLQKAINPLI 273 (526)
T ss_dssp CCSHH-HHHHHHHHH----TTSTSSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---SSSHHHHHHHHHHHH
T ss_pred ccchH-HHHHHHHHH----HhcccCChhhhhHHHHHHHHHHHh-hccccHHHHHHHHHHHHh---hcchHHHHhhHHHHH
Confidence 21111 122333333 22222111223 46888888888 567777766655555433 333 34677788888
Q ss_pred Hhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHH
Q 004614 445 ALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSL 523 (742)
Q Consensus 445 ~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~ 523 (742)
.++. .|++.|..+...+..++...+..+. ..-..++....+++..+|....++...++.. .. ..+|++-
T Consensus 274 ~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~n----~~~Il~e 343 (526)
T PF01602_consen 274 KLLSSSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDDDPSIRKKALDLLYKLANE--SN----VKEILDE 343 (526)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--HH----HHHHHHH
T ss_pred HHhhcccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCCChhHHHHHHHHHhhcccc--cc----hhhHHHH
Confidence 7775 5777898888888888777643332 1222234456688888988777777665432 23 3446666
Q ss_pred HHhhcc-CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCc
Q 004614 524 ICEGIA-SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTT 602 (742)
Q Consensus 524 l~~~L~-~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~ 602 (742)
+..++. ..+.++|+.++++|+.++.+.......+++.++..+ .......+.+++..+..++.+.+ ..
T Consensus 344 L~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll----~~~~~~~~~~~~~~i~~ll~~~~--------~~ 411 (526)
T PF01602_consen 344 LLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL----EISGDYVSNEIINVIRDLLSNNP--------EL 411 (526)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH----HCTGGGCHCHHHHHHHHHHHHST--------TT
T ss_pred HHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh----hhccccccchHHHHHHHHhhcCh--------hh
Confidence 666673 347779999999999999998666555555555444 33334567888888888887543 33
Q ss_pred hHHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHcCC
Q 004614 603 PFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 603 ~~~iv~~l~~~~~~-~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
...+++.+.+.+.+ +++.+++.++|.+|++....++
T Consensus 412 ~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 412 REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 56677777777665 6788999999999999998864
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=99.28 E-value=2.4e-07 Score=107.69 Aligned_cols=435 Identities=12% Similarity=0.057 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHcc
Q 004614 130 KNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (742)
Q Consensus 130 ~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~ 209 (742)
...+.++..+...+... ..+.. ++.++++.+.+++..+|+-+...+....+..+ + ...-.+..+.+-+.
T Consensus 47 ~~kk~alKkvIa~mt~G--~DvS~----LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p-e----lalLaINtl~KDl~ 115 (746)
T PTZ00429 47 YRKKAAVKRIIANMTMG--RDVSY----LFVDVVKLAPSTDLELKKLVYLYVLSTARLQP-E----KALLAVNTFLQDTT 115 (746)
T ss_pred HHHHHHHHHHHHHHHCC--CCchH----HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh-H----HHHHHHHHHHHHcC
Confidence 34577777777776543 22344 44446668888899999999998888765443 2 12244566677789
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccc
Q 004614 210 DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPH 289 (742)
Q Consensus 210 D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~ 289 (742)
|..|.||.-| +++++++- ...+++.+++.+.. ++.+.++-||+.|.-++.++.+..++.+..
T Consensus 116 d~Np~IRaLA---LRtLs~Ir-------------~~~i~e~l~~~lkk-~L~D~~pYVRKtAalai~Kly~~~pelv~~- 177 (746)
T PTZ00429 116 NSSPVVRALA---VRTMMCIR-------------VSSVLEYTLEPLRR-AVADPDPYVRKTAAMGLGKLFHDDMQLFYQ- 177 (746)
T ss_pred CCCHHHHHHH---HHHHHcCC-------------cHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhCcccccc-
Confidence 9999999998 55554321 33466777777654 678889999999999999998766643221
Q ss_pred hhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcCh--hHHhhHHHHHHHHHH
Q 004614 290 LSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT--ESLDQLVPHLARLVR 367 (742)
Q Consensus 290 lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~--~~l~~lvp~L~~~l~ 367 (742)
..+++.|.+++.+..+.++.-.. .++..+.+.-.. +.....+.+|+..+.
T Consensus 178 -~~~~~~L~~LL~D~dp~Vv~nAl---------------------------~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~ 229 (746)
T PTZ00429 178 -QDFKKDLVELLNDNNPVVASNAA---------------------------AIVCEVNDYGSEKIESSNEWVNRLVYHLP 229 (746)
T ss_pred -cchHHHHHHHhcCCCccHHHHHH---------------------------HHHHHHHHhCchhhHHHHHHHHHHHHHhh
Confidence 13456666777776665532110 011112111100 111233344444443
Q ss_pred ccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHH----H
Q 004614 368 SGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEE----T 443 (742)
Q Consensus 368 ~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~----l 443 (742)
.-..| ......+++ .++...=......++..+.+.+ +..|+.|.=+++.++-.+.....++.+...+.+ +
T Consensus 230 e~~EW-~Qi~IL~lL----~~y~P~~~~e~~~il~~l~~~L-q~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pL 303 (746)
T PTZ00429 230 ECNEW-GQLYILELL----AAQRPSDKESAETLLTRVLPRM-SHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTAL 303 (746)
T ss_pred cCChH-HHHHHHHHH----HhcCCCCcHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHH
Confidence 22122 222222222 3333222334567888888888 678888877777777766655445555554433 3
Q ss_pred HHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHH
Q 004614 444 AALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSL 523 (742)
Q Consensus 444 ~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~ 523 (742)
+.+...+++.|..+-..+..+....+..|.++.+.| ..+.++..+|+..-.++.-.++.. . -+++|+.-
T Consensus 304 v~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~F-----f~~~~Dp~yIK~~KLeIL~~Lane--~----Nv~~IL~E 372 (746)
T PTZ00429 304 LTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSF-----YVRYSDPPFVKLEKLRLLLKLVTP--S----VAPEILKE 372 (746)
T ss_pred HHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhh-----hcccCCcHHHHHHHHHHHHHHcCc--c----cHHHHHHH
Confidence 344345778887777777788777787777765443 234444446777666777665543 2 24456666
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCch
Q 004614 524 ICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTP 603 (742)
Q Consensus 524 l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~ 603 (742)
+.++..+.+.++++.+.++||.+|.++.... ...+..|.+-+..+. +...+++..+..++++.++.
T Consensus 373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a----~~cV~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~~--------- 438 (746)
T PTZ00429 373 LAEYASGVDMVFVVEVVRAIASLAIKVDSVA----PDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKYPEL--------- 438 (746)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhChHHH----HHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHCccH---------
Confidence 6678888899999999999999998876543 344445544444332 23345677777777754421
Q ss_pred HHHHHHHHHHH--h-hhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhhhcC
Q 004614 604 FAIVDMVSSAC--R-KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (742)
Q Consensus 604 ~~iv~~l~~~~--~-~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~~~~ 655 (742)
.++..+.+.+ . =.++..|.+.+|.+|+|....++ ..+++..++..+.++
T Consensus 439 -~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~~L~~~i~~f~~E 490 (746)
T PTZ00429 439 -LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKDIIQRFIDTIMEH 490 (746)
T ss_pred -HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHHHHHHHHhhhccC
Confidence 1444444322 1 14678899999999999887642 233343444444443
No 27
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.18 E-value=2.6e-08 Score=107.24 Aligned_cols=526 Identities=13% Similarity=0.086 Sum_probs=296.5
Q ss_pred CcchHHHHHHHhhhcCChhHHHHHHHHhccccc-hhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHH
Q 004614 56 KLSTYKELCNLANEMGQPDLIYKFMDLANYQVS-LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (742)
Q Consensus 56 ~~~tyk~l~~lA~~~~~p~lv~~fm~l~~~~~~-w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~ 134 (742)
-+++.+-|-.-|-+.|..-+..+.+.++-+-.. =.-|+=..--+-.++.+.++...||+.+|+=..=.+..|+++++|.
T Consensus 185 R~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllided~~~r~ 264 (975)
T COG5181 185 RMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLKRRC 264 (975)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccCccHHHhc
Confidence 467777788888888888888888887633221 1233333334455777788888899888876655678999999886
Q ss_pred HHHHHHHHhcc-------------CC--HH------------HHHHH--HHHHHHHHHHhhCCC-ChhHHHHHHHHHHHH
Q 004614 135 AMAHIWKSLVA-------------DP--KR------------TIDEH--LDLIFDDLLIQSGSR-LWRSREASCLSLADI 184 (742)
Q Consensus 135 a~~~iw~~lv~-------------d~--~~------------~i~~~--~~~il~~Ll~~l~~~-~wrvR~aa~~Al~~L 184 (742)
.-..|.-.|+. |. ++ ++..+ ++++++.|-...+++ +|..|..+....-.+
T Consensus 265 ~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI 344 (975)
T COG5181 265 MGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQI 344 (975)
T ss_pred ccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHH
Confidence 65555555442 11 00 12222 457788777777776 899998776555554
Q ss_pred hc--cCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCC
Q 004614 185 IQ--GRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS 262 (742)
Q Consensus 185 ~~--~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~ 262 (742)
.. |++ ..+|+..++..+-..+.|.+.-||--++.++.++++.. -|. +.+.++.++-.|-+ |..+
T Consensus 345 ~~llG~s---~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~----~Py------gie~fd~vl~pLw~-g~~~ 410 (975)
T COG5181 345 CELLGRS---RLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELV----GPY------GIEQFDEVLCPLWE-GASQ 410 (975)
T ss_pred HHHhCcc---HHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhc----CCc------chHHHHHHHHHHHH-HHHh
Confidence 43 443 56899999999999999999999998877777776543 222 45577777776654 4322
Q ss_pred -ChHHHHHHHHHHHHHHHHhcCcc-cccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHH
Q 004614 263 -KVDSISKASIGVVMKLVKGAGIA-IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMW 340 (742)
Q Consensus 263 -~~~~vr~~a~~~L~~la~~~g~~-l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~ 340 (742)
..++..+ -+.+.|-|+--..++ .-.|--+.|..++..+.+.+.+.+ .. .
T Consensus 411 hrgk~l~s-fLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemk-----------------k~-----------~ 461 (975)
T COG5181 411 HRGKELVS-FLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMK-----------------KD-----------L 461 (975)
T ss_pred cCCchHHH-HHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcc-----------------hh-----------H
Confidence 1222211 122222222111111 111122334444444433222111 10 0
Q ss_pred HHHHHHHhhcC---hhH-HhhHHHHHHHHH--HccCC-CchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhcccc
Q 004614 341 DTLDLCINVVD---TES-LDQLVPHLARLV--RSGIG-LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKS 413 (742)
Q Consensus 341 ~al~~~~~~~d---~~~-l~~lvp~L~~~l--~~~~~-~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~ 413 (742)
-.++..+..+| ... ..++.|.+.+-. +...+ -++-......-..++...| ...+.+-++..+ .|+.
T Consensus 462 l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g------~~~v~~kil~~~-~De~ 534 (975)
T COG5181 462 LVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGG------DPRVSRKILEYY-SDEP 534 (975)
T ss_pred HHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcC------ChHHHHHHHhhc-cCCc
Confidence 11222222222 221 244556555433 11111 1100000111112233322 234455566666 5777
Q ss_pred HHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhc
Q 004614 414 AAAKRAFASACASVLKYAT-----PSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF 488 (742)
Q Consensus 414 ~~Vr~~~~~al~~L~~~~~-----~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~ 488 (742)
+.-|+-.+.+...++...+ +.....+..-+...+.++...-..+-.+++++.....-..++|++.++..++.-..
T Consensus 535 ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~ 614 (975)
T COG5181 535 EPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLR 614 (975)
T ss_pred chhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhc
Confidence 6777777766666665544 22234444444444432222111111222233222344557888888887776666
Q ss_pred CCchHHHHHHHHHHHHh---cCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHH
Q 004614 489 EDDKYVSDLFEELWEEN---TSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLES 564 (742)
Q Consensus 489 d~~~~v~~~~~~~~~~~---~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~-~~~~~~~~l~p~ 564 (742)
...++||....+....+ ..+|+.+ ..+..+=.++.++|.....++--...+++..+.++.+- .+.|-...++|.
T Consensus 615 ~k~p~vR~~aadl~~sl~~vlk~c~e~--~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ 692 (975)
T COG5181 615 SKPPDVRIRAADLMGSLAKVLKACGET--KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPS 692 (975)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhcchH--HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcccc
Confidence 66677776554443322 2223211 12223334566888777788888888888888877653 466666677777
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHH---HHHHHHhhhCHHHHHHHHHHHHHHHHHcCCC
Q 004614 565 IMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVD---MVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (742)
Q Consensus 565 L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~---~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~ 639 (742)
|.-.|+.+...+-+.-+.-++.++...++++. ...-.. -++..++.-|++.|++|..++|-+.++.+..
T Consensus 693 ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~------~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq 764 (975)
T COG5181 693 LTPILRNKHQKVVANTIALVGTICMNSPEYIG------VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ 764 (975)
T ss_pred ccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC------HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH
Confidence 76667777666777778788888877766543 233334 3566777789999999999999999999753
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.09 E-value=2.1e-08 Score=121.46 Aligned_cols=172 Identities=14% Similarity=0.110 Sum_probs=117.3
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhc
Q 004614 410 EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF 488 (742)
Q Consensus 410 ~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~ 488 (742)
.|+++.||..++.+++.+- ..+ .+..... +|...|..++..++.+....+ ..+|.+....+
T Consensus 724 ~D~d~~VR~~Av~aL~~~~---~~~-------~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~ 785 (897)
T PRK13800 724 GDPDHRVRIEAVRALVSVD---DVE-------SVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTG 785 (897)
T ss_pred cCCCHHHHHHHHHHHhccc---CcH-------HHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhc
Confidence 5677777777777776541 111 1122222 355667766676666633211 12555566677
Q ss_pred CCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHh
Q 004614 489 EDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKE 568 (742)
Q Consensus 489 d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~ 568 (742)
|+++.||......+..+... +.+...+...|.|++|.||..|+.+|+.+.. +..++.|...
T Consensus 786 D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~ 846 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEA 846 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHH
Confidence 88888998777666553211 1233456677899999999999999986532 2355888888
Q ss_pred cCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 004614 569 VPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (742)
Q Consensus 569 l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~ 631 (742)
+++..|.+|..++.+|+.+- ..+..++.+.+.+++.+..||+.|..+|..
T Consensus 847 L~D~~~~VR~~A~~aL~~~~-------------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 847 LTDPHLDVRKAAVLALTRWP-------------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred hcCCCHHHHHHHHHHHhccC-------------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 89999999999999999851 035677778888889999999999999864
No 29
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.1e-06 Score=97.91 Aligned_cols=454 Identities=13% Similarity=0.113 Sum_probs=265.1
Q ss_pred CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHH
Q 004614 127 DPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFR 206 (742)
Q Consensus 127 Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~ 206 (742)
..+..+++||..|...++++. .+..+|+. +.++..+++..||+-.-.=|....+..+...+. -+....+
T Consensus 47 nkd~~KleAmKRIia~iA~G~--dvS~~Fp~----VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk 115 (968)
T KOG1060|consen 47 NKDSLKLEAMKRIIALIAKGK--DVSLLFPA----VVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQK 115 (968)
T ss_pred cccHHHHHHHHHHHHHHhcCC--cHHHHHHH----HHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHh
Confidence 345679999999999999763 36666665 677888889999998877777776665533331 1345567
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhh---cCCCCChHHHHHHHHHHHHHHHHhcC
Q 004614 207 AMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA---EGILSKVDSISKASIGVVMKLVKGAG 283 (742)
Q Consensus 207 ~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~---~gl~~~~~~vr~~a~~~L~~la~~~g 283 (742)
.|.|+.+.+|..| ++.++.+ -+..|.|+++. +...+.++-||+.|..+|-++-.-..
T Consensus 116 ~L~DpN~LiRasA---LRvlSsI-----------------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~ 175 (968)
T KOG1060|consen 116 ALKDPNQLIRASA---LRVLSSI-----------------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP 175 (968)
T ss_pred hhcCCcHHHHHHH---HHHHHhc-----------------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh
Confidence 7999999999998 4444321 12334444432 34566788999999999988764332
Q ss_pred cccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHH
Q 004614 284 IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLA 363 (742)
Q Consensus 284 ~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~ 363 (742)
+ +-++|+..+-.+|++..|-++....+.-+. +---|+.++ +.-...+..+...+|+=..-.++..|.
T Consensus 176 -e---~k~qL~e~I~~LLaD~splVvgsAv~AF~e-------vCPerldLI--HknyrklC~ll~dvdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 176 -E---QKDQLEEVIKKLLADRSPLVVGSAVMAFEE-------VCPERLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLT 242 (968)
T ss_pred -h---hHHHHHHHHHHHhcCCCCcchhHHHHHHHH-------hchhHHHHh--hHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 2 224677777777787777665432211110 000010000 000111111122222111122344444
Q ss_pred HHHHccCCCchHhhHH----HHHHHHH-----HHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHH
Q 004614 364 RLVRSGIGLNTRVGVA----SFISLLV-----QKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (742)
Q Consensus 364 ~~l~~~~~~~~r~~a~----~~l~~L~-----~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~ 434 (742)
+..|...-.|+..... ..=+.+. .+.+....|-+.-+++..-..+ +.+|++|--+.+.+.-++ ++..
T Consensus 243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl-~S~n~sVVmA~aql~y~l---AP~~ 318 (968)
T KOG1060|consen 243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL-QSRNPSVVMAVAQLFYHL---APKN 318 (968)
T ss_pred HHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH-hcCCcHHHHHHHhHHHhh---CCHH
Confidence 4444332222211000 0000000 1111233444567788777777 678998877766666555 5666
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHH-HHHHHHhcCCChhhH
Q 004614 435 QAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLF-EELWEENTSGDRVTL 513 (742)
Q Consensus 435 ~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~-~~~~~~~~~~~~~~i 513 (742)
.+.++++.++.++.+..+.+..+-..+..|+...+..|.+|++.|. . ...|+.....+ .+++..+...
T Consensus 319 ~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----v--~ssDp~~vk~lKleiLs~La~e----- 387 (968)
T KOG1060|consen 319 QVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFF----V--RSSDPTQVKILKLEILSNLANE----- 387 (968)
T ss_pred HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceE----e--ecCCHHHHHHHHHHHHHHHhhh-----
Confidence 7888888888888777777777778888888888889999988773 2 12344433333 3666555433
Q ss_pred HhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccc
Q 004614 514 QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (742)
Q Consensus 514 ~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~ 593 (742)
.-..+|+.-+..|+.+++..+-..+.++||..+...+.- -++.+.-|+.-++.+. +.|+..-+..++..-.
T Consensus 388 -sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv----~~tCL~gLv~Llsshd----e~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 388 -SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV----TDTCLNGLVQLLSSHD----ELVVAEAVVVIKRLLQ 458 (968)
T ss_pred -ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch----hhHHHHHHHHHHhccc----chhHHHHHHHHHHHHh
Confidence 235567777788889988888888889999999887653 2345566666665543 3334443333333211
Q ss_pred ccCcCCCCchHHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhhhcCcc
Q 004614 594 DISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTA 657 (742)
Q Consensus 594 ~~~~~~~~~~~~iv~~l~~~~~~-~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~~~~~~ 657 (742)
. ++.....|+.-+.+.+.. .-+.-|...+|.+|.++...+ .+.+.++..+..+|.
T Consensus 459 ~----~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vp-----ri~PDVLR~laksFs 514 (968)
T KOG1060|consen 459 K----DPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVP-----RIAPDVLRKLAKSFS 514 (968)
T ss_pred h----ChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc-----hhchHHHHHHHHhhc
Confidence 1 122233455555555532 234557777899999887654 345566666666553
No 30
>PRK09687 putative lyase; Provisional
Probab=99.05 E-value=4.8e-08 Score=101.59 Aligned_cols=242 Identities=11% Similarity=0.011 Sum_probs=153.4
Q ss_pred chhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh-h
Q 004614 88 SLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQ-S 166 (742)
Q Consensus 88 ~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~-l 166 (742)
+.+.|..|+++|+.+-+ ..+++.+.+.+.|+++.||+.+..+.+.+-. ++.. .+..++.|... +
T Consensus 36 d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~-~~~~----~~~a~~~L~~l~~ 100 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGM-AKRC----QDNVFNILNNLAL 100 (280)
T ss_pred CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-Cccc----hHHHHHHHHHHHh
Confidence 36778889988886532 2355566666799999999999999998763 2221 22344444444 5
Q ss_pred CCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHh
Q 004614 167 GSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQ 246 (742)
Q Consensus 167 ~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~ 246 (742)
.|++|.||..++.+||.+-.... .+...++..+...+.|.+..||.+|..++..+. ...
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~-----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------------~~~ 159 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNP-----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------------DEA 159 (280)
T ss_pred cCCCHHHHHHHHHHHhccccccc-----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------------CHH
Confidence 78999999999999999843322 123345555666678889999999855543221 223
Q ss_pred HHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhh
Q 004614 247 SMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKL 326 (742)
Q Consensus 247 ~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~ 326 (742)
.++.+++.| .++++.||..+..+|+.+ ...-|..++.|+..+.+..+.+...
T Consensus 160 ai~~L~~~L-----~d~~~~VR~~A~~aLg~~--------~~~~~~~~~~L~~~L~D~~~~VR~~--------------- 211 (280)
T PRK09687 160 AIPLLINLL-----KDPNGDVRNWAAFALNSN--------KYDNPDIREAFVAMLQDKNEEIRIE--------------- 211 (280)
T ss_pred HHHHHHHHh-----cCCCHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHhcCCChHHHHH---------------
Confidence 445555543 456789999999999887 1223678888888887654443211
Q ss_pred hHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhh
Q 004614 327 ENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFP 406 (742)
Q Consensus 327 d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~ 406 (742)
+ ..+++. ++. +..+|.|++.++++. .+..++..++.+ | .+..++.|.+
T Consensus 212 ------A------~~aLg~----~~~---~~av~~Li~~L~~~~---~~~~a~~ALg~i----g------~~~a~p~L~~ 259 (280)
T PRK09687 212 ------A------IIGLAL----RKD---KRVLSVLIKELKKGT---VGDLIIEAAGEL----G------DKTLLPVLDT 259 (280)
T ss_pred ------H------HHHHHc----cCC---hhHHHHHHHHHcCCc---hHHHHHHHHHhc----C------CHhHHHHHHH
Confidence 1 112222 111 356777777776642 455666666544 1 1356677777
Q ss_pred hhhccccHHHHHHHHHHHH
Q 004614 407 VVKEEKSAAAKRAFASACA 425 (742)
Q Consensus 407 ~l~~D~~~~Vr~~~~~al~ 425 (742)
.+..+.+..|+..+..++.
T Consensus 260 l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHhhCCChhHHHHHHHHHh
Confidence 7743667778777766653
No 31
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.00 E-value=3.2e-09 Score=91.14 Aligned_cols=72 Identities=24% Similarity=0.274 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHH
Q 004614 149 RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDK 221 (742)
Q Consensus 149 ~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~ 221 (742)
..+.+|++.|++.++..++|++||||..||.+|.++..... +.+.+|+.+||..+.+...|.++.||.+|..
T Consensus 19 ~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 19 KDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR-GEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 44899999999999999999999999999999999998776 6788899999999999999999999999843
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.98 E-value=1.1e-07 Score=115.14 Aligned_cols=273 Identities=11% Similarity=0.041 Sum_probs=166.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccc
Q 004614 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (742)
Q Consensus 158 il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~ 237 (742)
-++.|+..+.|+++.||..|+.+|+.+-. ++.++.+.+.|+|.++.||.+|..++..+.... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----~-- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----P-- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----C--
Confidence 44567778889999999999999988631 245566667789999999999866654442100 0
Q ss_pred cCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhh
Q 004614 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (742)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~ 317 (742)
. ...++.. |.++++.||..++.+|+.+-. +. ...|+..+.+.++.+..
T Consensus 685 ------~---~~~L~~~-----L~~~d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~------- 732 (897)
T PRK13800 685 ------P---APALRDH-----LGSPDPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRI------- 732 (897)
T ss_pred ------c---hHHHHHH-----hcCCCHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHH-------
Confidence 0 1122222 234678999999998877531 11 12455566654443221
Q ss_pred hcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccH
Q 004614 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT 397 (742)
Q Consensus 318 ~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~ 397 (742)
.++..+..+ .+
T Consensus 733 -----------------------------------------------------------~Av~aL~~~--------~~-- 743 (897)
T PRK13800 733 -----------------------------------------------------------EAVRALVSV--------DD-- 743 (897)
T ss_pred -----------------------------------------------------------HHHHHHhcc--------cC--
Confidence 111111100 00
Q ss_pred HHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhh
Q 004614 398 SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH 476 (742)
Q Consensus 398 ~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~ 476 (742)
.+.+...+ .|+++.||..++.+++.+-..... -++.+...+. +|+..|..+...++.+...
T Consensus 744 ---~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~~~-----~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~--------- 805 (897)
T PRK13800 744 ---VESVAGAA-TDENREVRIAVAKGLATLGAGGAP-----AGDAVRALTGDPDPLVRAAALAALAELGCP--------- 805 (897)
T ss_pred ---cHHHHHHh-cCCCHHHHHHHHHHHHHhccccch-----hHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------
Confidence 01123334 678888888888888877432111 0223334443 4566777776666665221
Q ss_pred hhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 004614 477 AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (742)
Q Consensus 477 ~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~ 556 (742)
..+.+.+..+..|++..||....+.+..+ +. ++.++.+...|.|++|.||+.|+.+|+.+. +
T Consensus 806 ~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l-~~---------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----- 867 (897)
T PRK13800 806 PDDVAAATAALRASAWQVRQGAARALAGA-AA---------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----- 867 (897)
T ss_pred chhHHHHHHHhcCCChHHHHHHHHHHHhc-cc---------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C-----
Confidence 11223345556777888888766666543 11 234466777889999999999999999851 1
Q ss_pred hHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 004614 557 YHHVLLESIMKEVPGRLWEGKDALLYAIG 585 (742)
Q Consensus 557 ~~~~l~p~L~~~l~~r~~~~ke~vl~aL~ 585 (742)
-+...+.|.+.+++...++|..+..+|.
T Consensus 868 -~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 868 -DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred -CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1346677888888888889999988885
No 33
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.9e-06 Score=96.72 Aligned_cols=455 Identities=15% Similarity=0.175 Sum_probs=254.0
Q ss_pred HhccccchhhhhhHHhhHHH------------HHHH---hhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhcc-
Q 004614 82 LANYQVSLNSKRGAAFGFSK------------IAKQ---AGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVA- 145 (742)
Q Consensus 82 l~~~~~~w~~r~~A~~~l~~------------i~~~---~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~- 145 (742)
+.-+++.|++.||-..=-+. |... -++..-.++..++..|+....|.+..||+++....+-+..
T Consensus 292 l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r 371 (1133)
T KOG1943|consen 292 LKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR 371 (1133)
T ss_pred cCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc
Confidence 44445679999876521111 1111 1222334567888899999999999999999888887765
Q ss_pred CCHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHcc--C------CcHHHH
Q 004614 146 DPKRTIDEHLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD--D------IKETVR 216 (742)
Q Consensus 146 d~~~~i~~~~~~il~~Ll~~l~-~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~--D------~~~~VR 216 (742)
.|+.-.++.+..+++ ++.-.. +..|+ ++|.||+++... + =-+-..+++++|.+.+.+. + .-..||
T Consensus 372 lp~~Lad~vi~svid-~~~p~e~~~aWH---gacLaLAELA~r-G-lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VR 445 (1133)
T KOG1943|consen 372 LPPELADQVIGSVID-LFNPAEDDSAWH---GACLALAELALR-G-LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVR 445 (1133)
T ss_pred CcHHHHHHHHHHHHH-hcCcCCchhHHH---HHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHhhhhhhhcccccccchH
Confidence 455556777888887 444444 66787 999999999752 1 1122345677777777663 2 335699
Q ss_pred HHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHH
Q 004614 217 TAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSC 296 (742)
Q Consensus 217 ~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~ 296 (742)
.||+=.++++++ .-++ .+.++.++.+.+.|+..++-+..-.+|..|.-++.+.+.+.|.. ||=
T Consensus 446 DaAcY~~WAf~R----ays~-----~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~--p~G------ 508 (1133)
T KOG1943|consen 446 DAACYVCWAFAR----AYSP-----SDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF--PHG------ 508 (1133)
T ss_pred HHHHHHHHHHHh----cCCh-----hhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC--CCc------
Confidence 999999998854 2222 22455788888888766677777789999999999888776643 431
Q ss_pred HHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHh
Q 004614 297 MLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRV 376 (742)
Q Consensus 297 Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~ 376 (742)
+++++.. ||.. +..|+
T Consensus 509 -i~Lis~~-----dy~s----------------------------------------------------------V~~rs 524 (1133)
T KOG1943|consen 509 -ISLISTI-----DYFS----------------------------------------------------------VTNRS 524 (1133)
T ss_pred -hhhhhhc-----chhh----------------------------------------------------------hhhhh
Confidence 1111110 1211 01111
Q ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHhhh-hhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh-cCCchhH
Q 004614 377 GVASFISLLVQKIGMDIKPYTSMLLRLLFPV-VKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALH-IDDKNSQ 454 (742)
Q Consensus 377 ~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~-l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~-~~d~~~r 454 (742)
.|-..+..-+ ..+.-|...+++.++.. + ..-+..+|+.++.++..|....++.....+.+++++.. ..|..-|
T Consensus 525 Ncy~~l~~~i----a~~~~y~~~~f~~L~t~Kv-~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r 599 (1133)
T KOG1943|consen 525 NCYLDLCVSI----AEFSGYREPVFNHLLTKKV-CHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMR 599 (1133)
T ss_pred hHHHHHhHHH----HhhhhHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHh
Confidence 1111111111 23334566666665544 3 45677889999999988876666555545555555544 3566666
Q ss_pred HH----HHHHHHHHHhhchh---hhh---hhhhhhhhHhhHhhcCCch-H-HHHHHHHHHHHhcCCChhhHHhhH-HHHH
Q 004614 455 IS----CAILLKSYSSVASD---VLS---GYHAVIVPVIFISRFEDDK-Y-VSDLFEELWEENTSGDRVTLQLYL-GEIV 521 (742)
Q Consensus 455 ~~----a~~~l~~i~~~~~~---~~~---~~~~~vlP~l~~~~~d~~~-~-v~~~~~~~~~~~~~~~~~~i~~yl-~~il 521 (742)
.. ++++++++-+..|- ..+ ..+..++|.++....+... . .+.......+.+.-+-.+..+.++ +...
T Consensus 600 ~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~ 679 (1133)
T KOG1943|consen 600 HGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQ 679 (1133)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 54 44444444332211 111 1223345555544433321 1 233323333333222211112222 2244
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHh--CcchhhhHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHhhcccccCcC
Q 004614 522 SLICEGIASSSWSSKRKSAKAICKLGEIL--GESLSNYHHVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCHKDISAE 598 (742)
Q Consensus 522 ~~l~~~L~~~sw~vR~~Aa~~lg~La~~~--g~~~~~~~~~l~p~L~~~l~~r-~~~~ke~vl~aL~~l~~~~~~~~~~~ 598 (742)
.++.+++.+++ .+|..|..++++++... ++.-. -..+....+.++..- +...|..+..+++.+.... +.
T Consensus 680 ~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~--~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~---i~-- 751 (1133)
T KOG1943|consen 680 MLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGE--EAPLITRYLSRLTKCSEERIRRGLILALGVLPSEL---IH-- 751 (1133)
T ss_pred HHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchh--hhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh---hc--
Confidence 55666666777 89999999999999864 22211 112434444444332 3445666666665543211 11
Q ss_pred CCCchHHHHHHHHHHHh-hhCHHHHHHHHHHHHHHHHHcC
Q 004614 599 DPTTPFAIVDMVSSACR-KKIKKYREAAFSCLEQVIKAFR 637 (742)
Q Consensus 599 ~~~~~~~iv~~l~~~~~-~~~~~~R~~a~~~Lg~l~~~~~ 637 (742)
-.+.+.+.+.+..... +....-|+..+.++...+..+.
T Consensus 752 -~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~ 790 (1133)
T KOG1943|consen 752 -RHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVT 790 (1133)
T ss_pred -hHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 1223344444433221 1255667777777777777765
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=98.97 E-value=3.8e-05 Score=89.68 Aligned_cols=464 Identities=12% Similarity=0.062 Sum_probs=220.5
Q ss_pred hhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhh
Q 004614 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (742)
Q Consensus 115 ~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~ 194 (742)
..++|-..+....++..+|+-..--|....... .+..--.++.+.+.+.|+++-+|-.|...++.+ +. +.+.
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~----pelalLaINtl~KDl~d~Np~IRaLALRtLs~I---r~-~~i~ 138 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ----PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI---RV-SSVL 138 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---Cc-HHHH
Confidence 446666666778899999998877777776532 223445567788889999999998777666654 22 3444
Q ss_pred hHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHH
Q 004614 195 KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGV 274 (742)
Q Consensus 195 ~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~ 274 (742)
+ .+...+.+.+.|.++.||++|+-.+..+-......+. . ..+++.|.+. +.+.++.|...|+.+
T Consensus 139 e---~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~--------~----~~~~~~L~~L-L~D~dp~Vv~nAl~a 202 (746)
T PTZ00429 139 E---YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY--------Q----QDFKKDLVEL-LNDNNPVVASNAAAI 202 (746)
T ss_pred H---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc--------c----cchHHHHHHH-hcCCCccHHHHHHHH
Confidence 4 5555566678999999999996655554322111110 0 1123333321 345678899999999
Q ss_pred HHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcc--hhh---hhHH--hhhhccCCcHHHHHHHHH
Q 004614 275 VMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQ--TEK---LENL--RISIAKGSPMWDTLDLCI 347 (742)
Q Consensus 275 L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~--~~~---~d~~--r~~~~~~s~l~~al~~~~ 347 (742)
|.++.+..+..+. .....+..|+..+.+..+|..-++-.-...|.-+ ++. ++.+ |+....++..++|+..++
T Consensus 203 L~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il 281 (746)
T PTZ00429 203 VCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVA 281 (746)
T ss_pred HHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999876654332 2344456666666655555432221111111110 000 0000 000011111223333222
Q ss_pred hhcChhHHhhHHHHHHHHHHcc-CCCchHhhHHHHHHH-HHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHH
Q 004614 348 NVVDTESLDQLVPHLARLVRSG-IGLNTRVGVASFISL-LVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACA 425 (742)
Q Consensus 348 ~~~d~~~l~~lvp~L~~~l~~~-~~~~~r~~a~~~l~~-L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~ 425 (742)
...... -+.++..+..-+..+ +.+.+.....+++.. -....-.........-++..+-.. +|++ .||... +.
T Consensus 282 ~l~~~~-~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~-~Dp~-yIK~~K---Le 355 (746)
T PTZ00429 282 NLASRC-SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRY-SDPP-FVKLEK---LR 355 (746)
T ss_pred HhcCcC-CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhccc-CCcH-HHHHHH---HH
Confidence 221100 001111111111100 000000001111110 000000000000111122222222 3333 243332 33
Q ss_pred HHHhhCCHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHH
Q 004614 426 SVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEE 504 (742)
Q Consensus 426 ~L~~~~~~~~~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~ 504 (742)
-|.+.+.++.+..++..+.+... .|.+.+..+...++.++.. +......++..++....+..+.+.+. ..+...
T Consensus 356 IL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k----~~~~a~~cV~~Ll~ll~~~~~~v~e~-i~vik~ 430 (746)
T PTZ00429 356 LLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK----VDSVAPDCANLLLQIVDRRPELLPQV-VTAAKD 430 (746)
T ss_pred HHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh----ChHHHHHHHHHHHHHhcCCchhHHHH-HHHHHH
Confidence 33344455555555555554332 2444444444555555432 33455666666655444333333322 233333
Q ss_pred hcCCChhhHHhhHHHHHHHHHhhc--c-CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHH
Q 004614 505 NTSGDRVTLQLYLGEIVSLICEGI--A-SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALL 581 (742)
Q Consensus 505 ~~~~~~~~i~~yl~~il~~l~~~L--~-~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl 581 (742)
+....+.. | ++..++..+ . =.+...|.+..-.||..+..... .+.++..+++.+.+.+..+|-.+|
T Consensus 431 IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~~E~~~VqlqlL 499 (746)
T PTZ00429 431 IVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIMEHEQRVQLAIL 499 (746)
T ss_pred HHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhccCCHHHHHHHH
Confidence 32222211 1 333333322 1 13455677777788887765432 345666666776665667888888
Q ss_pred HHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhh-hCHHHHHHHHHHHHHH
Q 004614 582 YAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQV 632 (742)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~-~~~~~R~~a~~~Lg~l 632 (742)
.+.+.+.-..+. ...+.+.+.+....++ .|+++|..|+....-+
T Consensus 500 ta~vKlfl~~p~-------~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 500 SAAVKMFLRDPQ-------GMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHHHHhcCcH-------HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 888877654431 1123344444344343 6778888887665543
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.89 E-value=8e-09 Score=88.66 Aligned_cols=94 Identities=21% Similarity=0.268 Sum_probs=84.4
Q ss_pred hhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCC
Q 004614 90 NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR 169 (742)
Q Consensus 90 ~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~ 169 (742)
|.|+|+..|+++++-+.+....+|+.+|+|-++.++.|++++||..++...-.+++..+..+-.||.+|++.|.+.+.|+
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999888999999999999999999999999999998888887666666679999999999999999
Q ss_pred ChhHHHHHHHHHHHH
Q 004614 170 LWRSREASCLSLADI 184 (742)
Q Consensus 170 ~wrvR~aa~~Al~~L 184 (742)
+.+||.+|+. +..+
T Consensus 81 d~~Vr~~a~~-Ld~l 94 (97)
T PF12755_consen 81 DENVRSAAEL-LDRL 94 (97)
T ss_pred chhHHHHHHH-HHHH
Confidence 9999999964 4444
No 36
>PRK09687 putative lyase; Provisional
Probab=98.84 E-value=1.5e-07 Score=97.92 Aligned_cols=210 Identities=11% Similarity=0.016 Sum_probs=147.1
Q ss_pred HHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhh
Q 004614 399 MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHA 477 (742)
Q Consensus 399 ~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~ 477 (742)
.-++.|+..| .|++..||..++.+++.+- +++.+ +.+..+.. +|+..|..++.+++.+...-. ...
T Consensus 23 ~~~~~L~~~L-~d~d~~vR~~A~~aL~~~~---~~~~~----~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-----~~~ 89 (280)
T PRK09687 23 LNDDELFRLL-DDHNSLKRISSIRVLQLRG---GQDVF----RLAIELCSSKNPIERDIGADILSQLGMAKR-----CQD 89 (280)
T ss_pred ccHHHHHHHH-hCCCHHHHHHHHHHHHhcC---cchHH----HHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-----chH
Confidence 3355566667 6899999999988887552 22222 22333333 577889999899998843110 033
Q ss_pred hhhhHhhHh-hcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 004614 478 VIVPVIFIS-RFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (742)
Q Consensus 478 ~vlP~l~~~-~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~ 556 (742)
..+|.+... .+|++..||......+..+..+. ..+.+..++.+...+.|.+|.||..++.+||.+. .
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----~---- 157 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----D---- 157 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----C----
Confidence 456666543 57888899988778777653321 1235566777778888999999999999997542 2
Q ss_pred hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHc
Q 004614 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (742)
Q Consensus 557 ~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~ 636 (742)
+..++.|++.+++..|.+|..+..+|+.+. .. .+.+++.+.+.+.+.+..+|..|+..||++
T Consensus 158 --~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--~~----------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---- 219 (280)
T PRK09687 158 --EAAIPLLINLLKDPNGDVRNWAAFALNSNK--YD----------NPDIREAFVAMLQDKNEEIRIEAIIGLALR---- 219 (280)
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--CC----------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc----
Confidence 357788888998888999999999999871 11 357788888888999999999999999984
Q ss_pred CCCchHHhHHHHHHhhhc
Q 004614 637 RDPKFFNIIFPLLFEMCG 654 (742)
Q Consensus 637 ~~~~~~~~v~~il~~~~~ 654 (742)
++ ...+.+++..+.+
T Consensus 220 ~~---~~av~~Li~~L~~ 234 (280)
T PRK09687 220 KD---KRVLSVLIKELKK 234 (280)
T ss_pred CC---hhHHHHHHHHHcC
Confidence 22 2344455555544
No 37
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=0.00028 Score=82.90 Aligned_cols=537 Identities=14% Similarity=0.073 Sum_probs=287.7
Q ss_pred chHHHHHHHhhhcCC--hh----HHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHH
Q 004614 58 STYKELCNLANEMGQ--PD----LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKN 131 (742)
Q Consensus 58 ~tyk~l~~lA~~~~~--p~----lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~ 131 (742)
++|+|+.++-.+.-. +. .+-.+|+.--|. .|+ -++-.+++.++.||+...|++.+-+-.|-+.|.+|+-.
T Consensus 331 ~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~kf~~-~~~---~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~ 406 (1176)
T KOG1248|consen 331 AASQSLKEILKESVTVIDALCSKQLHSLLDYKFHA-VWR---FILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFF 406 (1176)
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHHHcchHHH-HHH---HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCc
Confidence 455555554444332 11 133334333333 364 35667788899999988999998888888888888777
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHh---ccCCchhhhhHHHHHHHHHHHHc
Q 004614 132 VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADII---QGRKFDQVGKHLRRIWTAAFRAM 208 (742)
Q Consensus 132 VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~---~~~~~~~l~~~L~~i~~~l~~~l 208 (742)
-+.....+.++-|. ..-.+++-.++|-=+ ...+- +..=.|-|--|= .|.+...|.+|+-.+...+..-.
T Consensus 407 ~~~~ld~~IGSAV~---AmGPe~vL~~lpLnl-~~~s~----~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~ 478 (1176)
T KOG1248|consen 407 HKLQLDQCIGSAVR---AMGPERVLTILPLNL-HAESL----SFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKA 478 (1176)
T ss_pred cHHHHHHHHHHHHH---hhCHHHHHHHcchhc-ccccc----ccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 66667666666553 122445555555333 11111 122234443332 34443344443333333332221
Q ss_pred ---cCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhc---
Q 004614 209 ---DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGA--- 282 (742)
Q Consensus 209 ---~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~--- 282 (742)
.+....++ .+.++..-+.+++...+.-|.+.......+-|.|.. -....++.|...|..|..++...
T Consensus 479 ~~l~~~~~~~~-----~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~--al~~~~elr~~Ic~sL~~Lv~~n~~~ 551 (1176)
T KOG1248|consen 479 KKLKEAGSQVS-----LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGA--ALLKRPELRETICNSLRMLVEQNKPS 551 (1176)
T ss_pred HhhhhccCcHH-----HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHH--HHhcchHhHHHHHHHHHHHHHcCCCc
Confidence 22222222 244443332222222122233444556666666553 13345699999999999999874
Q ss_pred ------CcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHH-HHHhhcChhHH
Q 004614 283 ------GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLD-LCINVVDTESL 355 (742)
Q Consensus 283 ------g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~-~~~~~~d~~~l 355 (742)
...+..|....||.+.+.-.+..+... |+ -..|. +..+++. +.....+.++-
T Consensus 552 ~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~--------------l~~~~------~~L~~i~~~~~~~t~~dv~ 610 (1176)
T KOG1248|consen 552 SDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KI--------------LASRS------TVLEIIRVDYFTVTPTDVV 610 (1176)
T ss_pred chHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-cc--------------HHHHH------HHHHHHHHHHhhcccHHHH
Confidence 123556667777777766553222110 10 00110 0001111 11111122222
Q ss_pred hhHHHHHHHHHHccCCCchH-hhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCC-H
Q 004614 356 DQLVPHLARLVRSGIGLNTR-VGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-P 433 (742)
Q Consensus 356 ~~lvp~L~~~l~~~~~~~~r-~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~-~ 433 (742)
..|...+.+..... +...+ .....+|-.++.-....=..+..++. .+.....+..+..+++....-+..++..-+ .
T Consensus 611 ~~l~~s~~e~as~~-~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~ 688 (1176)
T KOG1248|consen 611 GSLKDSAGELASDL-DESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGE 688 (1176)
T ss_pred HHHHHHHHhHhccc-hhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchh
Confidence 22222222221111 00000 01222221111111111111222333 555555333467788888888888877622 1
Q ss_pred HHHHHHHHHHHHh----hc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhc--
Q 004614 434 SQAQKLIEETAAL----HI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT-- 506 (742)
Q Consensus 434 ~~~~~li~~l~~~----~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~-- 506 (742)
..+.+.+..+.+. .. .+...|.....++..+.+..+..+-.+....+|-++....+.+...|....+++-.+.
T Consensus 689 ~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i 768 (1176)
T KOG1248|consen 689 GLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAI 768 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHH
Confidence 1223333333332 22 2344566666788888777775555667777776665556655555554333333322
Q ss_pred C-C---ChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhh-hHHHHHHHHHHhcCCCChhhHHHHH
Q 004614 507 S-G---DRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN-YHHVLLESIMKEVPGRLWEGKDALL 581 (742)
Q Consensus 507 ~-~---~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~-~~~~l~p~L~~~l~~r~~~~ke~vl 581 (742)
. . +..-....+++.+.++..++...+-.++.+..-+++.+....+..+.. +++.++..+...+.++....+.+++
T Consensus 769 ~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI 848 (1176)
T KOG1248|consen 769 QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAI 848 (1176)
T ss_pred HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 0 000012345666677777766555555555466777777665554433 6888888888888888889999999
Q ss_pred HHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCC
Q 004614 582 YAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (742)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~ 639 (742)
..+..++.++++..- .++.++|++.+.+..++.+..+|.+.-..|.++++.++-+
T Consensus 849 ~fikvlv~~~pe~~l---~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 849 GFIKVLVYKFPEECL---SPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHHHcCCHHHH---hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 999999988876553 4678999999999888889999999999999999999754
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=8.5e-07 Score=96.75 Aligned_cols=321 Identities=16% Similarity=0.170 Sum_probs=203.6
Q ss_pred HHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhh-hhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHH
Q 004614 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (742)
Q Consensus 75 lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l-~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~ 153 (742)
.+.+|+....+......+.-||-+|-.|++|..+.-+-.+ ...+|.+.+..+.|+..||+-+.-+.+-++.|++..-+-
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 5788998886554456678899999999998866554333 368888999999999999999988888888887544443
Q ss_pred HHH-HHHHHHHHhhCCCCh-hHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 004614 154 HLD-LIFDDLLIQSGSRLW-RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (742)
Q Consensus 154 ~~~-~il~~Ll~~l~~~~w-rvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~ 231 (742)
.+. .+|+.|+..+..... .....+.|++.+|+.|..+..=-..+..++|.+++++.+.++.|..-| |++++.++
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da---~WAlsyLs- 265 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA---CWALSYLT- 265 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHh-
Confidence 333 366667777766554 567778899999999884343345688999999999999999999776 66654432
Q ss_pred hhhccccCccchhHh-HHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCccccc-chhhHHHHHHHhccc-cchHH
Q 004614 232 RLCDVTLTEISDARQ-SMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRP-HLSDLVSCMLESLSS-LEDQG 308 (742)
Q Consensus 232 r~~~~~~~~~~~~~~-~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p-~lp~Lv~~Ll~~ls~-~e~~~ 308 (742)
| +++...+. +-..++|.|.+ -|......++.-++.++|+|+........- --...+|.|..+++. .+...
T Consensus 266 ---d---g~ne~iq~vi~~gvv~~LV~-lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~i 338 (514)
T KOG0166|consen 266 ---D---GSNEKIQMVIDAGVVPRLVD-LLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESI 338 (514)
T ss_pred ---c---CChHHHHHHHHccchHHHHH-HHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhH
Confidence 1 11111111 22345666664 244455667788899999977543321000 012456777777763 33222
Q ss_pred HHHHHHHhhhcCc-chhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHH
Q 004614 309 LNYIELHAANAGI-QTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQ 387 (742)
Q Consensus 309 ~~~~~~~a~~~~~-~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~ 387 (742)
+.-.+|..++..- .++.+ ..++. ..++|.|+..++++ +..+|.+|+-+|+.++.
T Consensus 339 kkEAcW~iSNItAG~~~qi-----------------qaVid-------a~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 339 KKEACWTISNITAGNQEQI-----------------QAVID-------ANLIPVLINLLQTA-EFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHHHHHHHHhhcCCHHHH-----------------HHHHH-------cccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence 3334444433110 01111 11111 36899999999875 57888899999887764
Q ss_pred HhcccccccHH--HHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCC
Q 004614 388 KIGMDIKPYTS--MLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (742)
Q Consensus 388 ~~g~~l~p~~~--~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~ 432 (742)
....+--.|+- .+++.+...| .-.+..+-.....++..+++...
T Consensus 394 ~g~~~qi~yLv~~giI~plcdlL-~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 394 SGTPEQIKYLVEQGIIKPLCDLL-TCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred cCCHHHHHHHHHcCCchhhhhcc-cCCChHHHHHHHHHHHHHHHHHH
Confidence 43333333321 3555555555 34444555666777777776543
No 39
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=0.00019 Score=83.24 Aligned_cols=543 Identities=12% Similarity=0.087 Sum_probs=298.3
Q ss_pred cchHHHHHHH-hhhcCChhHHHHHHHHhc--cccchhhhhhHHhhHHHHHHHh------hh--hhc--hhhhhhhHHHhh
Q 004614 57 LSTYKELCNL-ANEMGQPDLIYKFMDLAN--YQVSLNSKRGAAFGFSKIAKQA------GD--ALK--PHLRLLIPKLVR 123 (742)
Q Consensus 57 ~~tyk~l~~l-A~~~~~p~lv~~fm~l~~--~~~~w~~r~~A~~~l~~i~~~~------~~--~l~--~~l~~lip~L~~ 123 (742)
+.+||-+..+ =.++.+=+.++.++.-.+ +..+|..|-.-.+=|+.++-.. ++ ..+ +.+.+|+.+--.
T Consensus 104 vrgyK~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~ 183 (1133)
T KOG1943|consen 104 VRGYKAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFEN 183 (1133)
T ss_pred hccchhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHH
Confidence 4455544322 223333345555555332 1234888877766666655422 11 112 225566655533
Q ss_pred hcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHHHhccCCchhhhhHHHHHH
Q 004614 124 FQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWR--SREASCLSLADIIQGRKFDQVGKHLRRIW 201 (742)
Q Consensus 124 ~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wr--vR~aa~~Al~~L~~~~~~~~l~~~L~~i~ 201 (742)
|.--.. ..|+++.-+..-+.+-+ +..+. +...+.-++..-.+...+ +.-+...++..+....+.+...||....+
T Consensus 184 Yl~~~~-~~r~~aalllsk~~sR~-D~~~~-~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~ 260 (1133)
T KOG1943|consen 184 YLISSG-ILRRSAALLLSKLFSRT-DVKDL-LLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGL 260 (1133)
T ss_pred HHhccc-hhHHHHHHHHHHHcccc-cHHHH-HHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhh
Confidence 333333 55666655555555321 23332 555555555554443333 33677888999998888788888888887
Q ss_pred HHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHh-----------------hhcccc-------------CccchhHhHHH
Q 004614 202 TAAFRAM--DDIKETVRTAGDKLCRSVTSLTIR-----------------LCDVTL-------------TEISDARQSMD 249 (742)
Q Consensus 202 ~~l~~~l--~D~~~~VR~aA~~~~~~l~~~~~r-----------------~~~~~~-------------~~~~~~~~~l~ 249 (742)
.++-.+. +|.+.-+|+--.+....++-++.. .+++.. .+..+..++++
T Consensus 261 r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE 340 (1133)
T KOG1943|consen 261 RMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVE 340 (1133)
T ss_pred HhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHH
Confidence 7765543 344445666665555544322210 000000 01122446788
Q ss_pred HHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHH
Q 004614 250 IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENL 329 (742)
Q Consensus 250 ~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~ 329 (742)
.++-.|++ ++.+.+..||=.++..++.+.++....+ ..+.+...++.++-.++ +..||.+
T Consensus 341 ~vie~Lls-~l~d~dt~VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~----~~aWHga------------ 400 (1133)
T KOG1943|consen 341 FVIEHLLS-ALSDTDTVVRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAED----DSAWHGA------------ 400 (1133)
T ss_pred HHHHHHHH-hccCCcchhhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCc----hhHHHHH------------
Confidence 88888886 7888888999999999999998877432 23344444544432221 2223321
Q ss_pred hhhhccCCcHHHHHHHHHh--hcChhHHhhHHHHHHHHHH-------ccCCCchHhhHHHHHHHHHHHhc-ccccccHHH
Q 004614 330 RISIAKGSPMWDTLDLCIN--VVDTESLDQLVPHLARLVR-------SGIGLNTRVGVASFISLLVQKIG-MDIKPYTSM 399 (742)
Q Consensus 330 r~~~~~~s~l~~al~~~~~--~~d~~~l~~lvp~L~~~l~-------~~~~~~~r~~a~~~l~~L~~~~g-~~l~p~~~~ 399 (742)
.=++.++.. .+-...++.++|.+++.+. .++|-..|-+++.+++.+.+.+. .+++||+.+
T Consensus 401 ----------cLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~ 470 (1133)
T KOG1943|consen 401 ----------CLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS 470 (1133)
T ss_pred ----------HHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH
Confidence 012222222 1223446788888888873 23556778899999999998875 578999999
Q ss_pred HHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHH----HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhh
Q 004614 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS----QAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGY 475 (742)
Q Consensus 400 ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~----~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~ 475 (742)
+..+|+....-|+.-.+|++++.|+-..+...+.- .+...+++ +. -..| ..+...++... ..|..|
T Consensus 471 L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy----~s--V~~r---sNcy~~l~~~i-a~~~~y 540 (1133)
T KOG1943|consen 471 LASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDY----FS--VTNR---SNCYLDLCVSI-AEFSGY 540 (1133)
T ss_pred HHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcch----hh--hhhh---hhHHHHHhHHH-HhhhhH
Confidence 99987755547999999999998987776543211 11111111 10 0111 12233333222 235566
Q ss_pred hhhhhhHhhHh-hcCCchHHHHHHHHHHHHhcCCChhhHH-hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc-
Q 004614 476 HAVIVPVIFIS-RFEDDKYVSDLFEELWEENTSGDRVTLQ-LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE- 552 (742)
Q Consensus 476 ~~~vlP~l~~~-~~d~~~~v~~~~~~~~~~~~~~~~~~i~-~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~- 552 (742)
...++..++.. ....|+.+|+.+...+..+.--.+..+. -|+++++ ....+.+...|..+..+.|.++..+-.
T Consensus 541 ~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~ll----d~~ls~~~~~r~g~~la~~ev~~~~~~l 616 (1133)
T KOG1943|consen 541 REPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLL----DSTLSKDASMRHGVFLAAGEVIGALRKL 616 (1133)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhh----hhhcCCChHHhhhhHHHHHHHHHHhhhh
Confidence 66666554443 3446778888776665554322222222 2344443 455677888999988888888865321
Q ss_pred c--hhhh-------HHH-HHHHHHHhc-CCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHH-----HHHHHHHHHhh
Q 004614 553 S--LSNY-------HHV-LLESIMKEV-PGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFA-----IVDMVSSACRK 616 (742)
Q Consensus 553 ~--~~~~-------~~~-l~p~L~~~l-~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~-----iv~~l~~~~~~ 616 (742)
. +... +++ +.|...+.+ +|. | +-+..+...+++++...- .++.+. ....+.+...+
T Consensus 617 ~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~---~-~lmr~~~~~~Ie~~s~s~----~~~~~~~v~e~~~~ll~~~l~~ 688 (1133)
T KOG1943|consen 617 EPVIKGLDENRIAGLLSIIPPICDRYFYRGQ---G-TLMRQATLKFIEQLSLSK----DRLFQDFVIENWQMLLAQNLTL 688 (1133)
T ss_pred hhhhhhhHHHHhhhhhhhccHHHHHHhccch---H-HHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHHhhcc
Confidence 1 1100 111 222333333 221 2 445556666777665321 122222 23334444444
Q ss_pred hCHHHHHHHHHHHHHHHHHcCC--Cc-hHHhHHHHHHhhhcC
Q 004614 617 KIKKYREAAFSCLEQVIKAFRD--PK-FFNIIFPLLFEMCGS 655 (742)
Q Consensus 617 ~~~~~R~~a~~~Lg~l~~~~~~--~~-~~~~v~~il~~~~~~ 655 (742)
.| ..|..|.+++++++..+-. +. -.+++..++..+.+.
T Consensus 689 ~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~ 729 (1133)
T KOG1943|consen 689 PN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKC 729 (1133)
T ss_pred hH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCc
Confidence 45 8999999999999987643 22 234666777776655
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.69 E-value=4.7e-05 Score=86.37 Aligned_cols=398 Identities=14% Similarity=0.133 Sum_probs=217.8
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHH--H
Q 004614 121 LVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL--R 198 (742)
Q Consensus 121 L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L--~ 198 (742)
+|.++.+.+...=..++.|.+.+.... ....-.+.+.+.+..++.+++..||+.+|.+++.+++... ....-+ .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~--~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL--SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE--GAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH--HHHHHhcCc
Confidence 788888887776667778888877542 2333377778889999999999999999999999987643 111111 3
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHH-----hHHHhhcCCCCChHHHHHHHHH
Q 004614 199 RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIV-----LPFLLAEGILSKVDSISKASIG 273 (742)
Q Consensus 199 ~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~l-----LP~Ll~~gl~~~~~~vr~~a~~ 273 (742)
++++.+...+.|.+..|.++|.++++.+++.- ..++.+ ++.|.. -+...++.+|--.++
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~---------------~~~~~l~~~~~~~~L~~-l~~~~~~~vR~Rv~e 182 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHP---------------EGLEQLFDSNLLSKLKS-LMSQSSDIVRCRVYE 182 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc---------------hhHHHHhCcchHHHHHH-HHhccCHHHHHHHHH
Confidence 77888888899999999999988777775311 122222 333322 112235677877888
Q ss_pred HHHHHHHhcCcccccchh--hHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhh-c
Q 004614 274 VVMKLVKGAGIAIRPHLS--DLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV-V 350 (742)
Q Consensus 274 ~L~~la~~~g~~l~p~lp--~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~-~ 350 (742)
++..+++...+.+ .+.- .+++.++..+.+.+.-+ +.+ ..+.+.++... -
T Consensus 183 l~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLv---------------------qln------alell~~La~~~~ 234 (503)
T PF10508_consen 183 LLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILV---------------------QLN------ALELLSELAETPH 234 (503)
T ss_pred HHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHH---------------------HHH------HHHHHHHHHcChh
Confidence 8988887654332 2222 36777777776522111 100 11222222221 0
Q ss_pred ChhHH--hhHHHHHHHHHHccCCCc-hH----hhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHH
Q 004614 351 DTESL--DQLVPHLARLVRSGIGLN-TR----VGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASA 423 (742)
Q Consensus 351 d~~~l--~~lvp~L~~~l~~~~~~~-~r----~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~a 423 (742)
+.+.+ ..+++.|.+.+......| .. .+...|++.++...+..+..-.+.++..++..+ +..++..+..+..+
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~-~s~d~~~~~~A~dt 313 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSML-ESQDPTIREVAFDT 313 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh-CCCChhHHHHHHHH
Confidence 11112 246777777776543333 11 155667777766544444444567888888877 56778899999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhh-hhhhhhhhHhhHhhcC-CchHHHHHHHHH
Q 004614 424 CASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLS-GYHAVIVPVIFISRFE-DDKYVSDLFEEL 501 (742)
Q Consensus 424 l~~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~-~~~~~vlP~l~~~~~d-~~~~v~~~~~~~ 501 (742)
+|.++... +...-+. ....+..+... ..++...+..+..++ ..+. -+..++....+ .++++..+ .+.
T Consensus 314 lg~igst~--~G~~~L~------~~~~~~~~~~l-~~~~~~~~~~~~~lk~r~l~-al~~il~~~~~~~~~~i~~~-~~~ 382 (503)
T PF10508_consen 314 LGQIGSTV--EGKQLLL------QKQGPAMKHVL-KAIGDAIKSGSTELKLRALH-ALASILTSGTDRQDNDILSI-TES 382 (503)
T ss_pred HHHHhCCH--HHHHHHH------hhcchHHHHHH-HHHHHHhcCCchHHHHHHHH-HHHHHHhcCCCCchHHHHHH-HHH
Confidence 99887332 2211110 00001111111 111111111111111 1111 11122211112 23333333 244
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-hCcchhhhHHHHHHHHHHhcCCCChhhHH--
Q 004614 502 WEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEI-LGESLSNYHHVLLESIMKEVPGRLWEGKD-- 578 (742)
Q Consensus 502 ~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~-~g~~~~~~~~~l~p~L~~~l~~r~~~~ke-- 578 (742)
|=+..++.+.. .++...++.|-.++|.++...+..++.. .|-..--..+.++..|..+-.+.+.++|+
T Consensus 383 w~~~~~~~~~~---------~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K 453 (503)
T PF10508_consen 383 WYESLSGSPLS---------NLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAK 453 (503)
T ss_pred HHHHhcCCchH---------HHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHH
Confidence 43333332211 1666777888899999999999999864 23221112344555555555554444444
Q ss_pred -HHHHHHHHH
Q 004614 579 -ALLYAIGSI 587 (742)
Q Consensus 579 -~vl~aL~~l 587 (742)
.++++|..-
T Consensus 454 ~~ii~~l~~~ 463 (503)
T PF10508_consen 454 YDIIKALAKS 463 (503)
T ss_pred HHHHHHHHhc
Confidence 566665543
No 41
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.68 E-value=7.2e-05 Score=82.95 Aligned_cols=387 Identities=14% Similarity=0.154 Sum_probs=222.3
Q ss_pred hHHHhhhcCCCCH---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHhccCCc---
Q 004614 118 IPKLVRFQYDPDK---NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKF--- 190 (742)
Q Consensus 118 ip~L~~~~~Dp~~---~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~-~wrvR~aa~~Al~~L~~~~~~--- 190 (742)
+|+|+....|.++ .-.+....+...+..++ ...+.....++..+.....+. +...-.+.+..+..+++....
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~-~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSP-QILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCCh-hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 3566666666554 23334555666666543 344555555555555544322 346667888888888775432
Q ss_pred -hhhhhHHHH-HHHHHHHHcc-----CCc--HHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhh----
Q 004614 191 -DQVGKHLRR-IWTAAFRAMD-----DIK--ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA---- 257 (742)
Q Consensus 191 -~~l~~~L~~-i~~~l~~~l~-----D~~--~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~---- 257 (742)
....-|..+ +++.+++..- +.. +.+=..++ .+....+|.+++. ..++.++.+...++.
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~----~l~~~iv~~l~~~-----~q~~~~~~~~~lf~~~~~~ 150 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLS----RLINLIVRSLSPE-----KQQEILDELYSLFLSPKSF 150 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHH----HHHHHHHHhCCHH-----HHHHHHHHHHHHHcccccc
Confidence 245556665 7777766542 111 33333333 3334445666543 234466666665541
Q ss_pred cCCCCCh---HHHHHHHHHHHHHHHHhcCcccc-cchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhh
Q 004614 258 EGILSKV---DSISKASIGVVMKLVKGAGIAIR-PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISI 333 (742)
Q Consensus 258 ~gl~~~~---~~vr~~a~~~L~~la~~~g~~l~-p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~ 333 (742)
..+..+. .+.+......+..+.....++.. |...+++..+++...+.+.+. .|..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~--------------------~~~~~ 210 (415)
T PF12460_consen 151 SPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEF--------------------SRLAA 210 (415)
T ss_pred CCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChH--------------------HHHHH
Confidence 1111111 12233344445555555555544 677778888887765432211 11110
Q ss_pred ccCCcHHHHHHHHH-hhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccc
Q 004614 334 AKGSPMWDTLDLCI-NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEK 412 (742)
Q Consensus 334 ~~~s~l~~al~~~~-~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~ 412 (742)
.+.+..++ ++.+.+.+..++..+...+........+..+..++..+..-.-..-.|....++..++..+ +|
T Consensus 211 ------~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL-~~- 282 (415)
T PF12460_consen 211 ------LQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL-SS- 282 (415)
T ss_pred ------HHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh-CC-
Confidence 11222222 2333444555555555544112233455566676665554443344577788888888888 44
Q ss_pred cHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCch
Q 004614 413 SAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDK 492 (742)
Q Consensus 413 ~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~ 492 (742)
+.+...++.+++.++.-. ++.+.+ -.++..|-. .-+++...++|.+..+....+.
T Consensus 283 -~~~g~~aA~~f~il~~d~-~~~l~~---------------------~~~a~vklL--ykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 283 -PELGQQAAKAFGILLSDS-DDVLNK---------------------ENHANVKLL--YKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred -hhhHHHHHHHHhhHhcCc-HHhcCc---------------------cccchhhhH--HhHHHHHHHHHHHHHHHhhcCh
Confidence 677888888888876221 111110 000111111 1246677888888776655555
Q ss_pred HHHHHHHHHHHHhcCCChhh-HHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHH
Q 004614 493 YVSDLFEELWEENTSGDRVT-LQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMK 567 (742)
Q Consensus 493 ~v~~~~~~~~~~~~~~~~~~-i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~ 567 (742)
+.++.+-..+..+....|.. +.++++++++++++.|.-++..+|.++..++-.+...-.+.+.+|+..++|.|++
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 57766655555555555544 4789999999999999999999999999999999988777888899999999875
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.62 E-value=0.00034 Score=79.40 Aligned_cols=421 Identities=13% Similarity=0.058 Sum_probs=226.6
Q ss_pred CcchHHHHHHHhhhcCChhHH-HH-HHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHH
Q 004614 56 KLSTYKELCNLANEMGQPDLI-YK-FMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQ 133 (742)
Q Consensus 56 ~~~tyk~l~~lA~~~~~p~lv-~~-fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR 133 (742)
-+.+|.++.+-.+..+.-+-+ .+ +.+..+.+. -..-.-+...+..+++.. ......+++.+.|.+.+.+|++.||
T Consensus 18 ~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~--~~~~l~~~~~~~L~~gL~h~~~~Vr 94 (503)
T PF10508_consen 18 RLEALPELKTELSSSPFLERLPEPVLFDCLNTSN-REQVELICDILKRLLSAL--SPDSLLPQYQPFLQRGLTHPSPKVR 94 (503)
T ss_pred hHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 456677776655555522111 11 222222220 011112223344554433 2223367888899999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHH-----HHHHHHH
Q 004614 134 DAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRI-----WTAAFRA 207 (742)
Q Consensus 134 ~a~~~iw~~lv~d~~~~i~~~~-~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i-----~~~l~~~ 207 (742)
+-+......++.+.....+... ..+++.++..+.+++-.|.+.|+.+|..+..... .+..+ .+.+..+
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~------~~~~l~~~~~~~~L~~l 168 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE------GLEQLFDSNLLSKLKSL 168 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch------hHHHHhCcchHHHHHHH
Confidence 9998888777765533333222 4688889999999999999999999999986432 22233 5566666
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHH--HHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcc
Q 004614 208 MDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD--IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA 285 (742)
Q Consensus 208 l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~--~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~ 285 (742)
+...++.||-.+..++-.+++.... ..++.. .+++.++. .+.+++--+|..+++++.+|++.- .
T Consensus 169 ~~~~~~~vR~Rv~el~v~i~~~S~~-----------~~~~~~~sgll~~ll~-eL~~dDiLvqlnalell~~La~~~--~ 234 (503)
T PF10508_consen 169 MSQSSDIVRCRVYELLVEIASHSPE-----------AAEAVVNSGLLDLLLK-ELDSDDILVQLNALELLSELAETP--H 234 (503)
T ss_pred HhccCHHHHHHHHHHHHHHHhcCHH-----------HHHHHHhccHHHHHHH-HhcCccHHHHHHHHHHHHHHHcCh--h
Confidence 7666788898776665555432111 112222 26676665 355567779999999999999832 1
Q ss_pred cccchh--hHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHH----hhHH
Q 004614 286 IRPHLS--DLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESL----DQLV 359 (742)
Q Consensus 286 l~p~lp--~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l----~~lv 359 (742)
-..|+. .+++.|.+.+.+.+..- |.....-...+...+.+... ++..+ +.++
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp---------------------~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~ 292 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDP---------------------RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFL 292 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCC---------------------cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 123332 46666766665432110 00000001122333333333 33322 4455
Q ss_pred HHHHHHHHccCCCchHhhHHHHHHHHHHHh-cc-----cccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCH
Q 004614 360 PHLARLVRSGIGLNTRVGVASFISLLVQKI-GM-----DIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP 433 (742)
Q Consensus 360 p~L~~~l~~~~~~~~r~~a~~~l~~L~~~~-g~-----~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~ 433 (742)
..+.+.+.+ .+...+..|.+.++.++... |. ...+-....++.+.... .....++|.++..|++.++....+
T Consensus 293 ~~l~~~~~s-~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~-~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 293 ERLFSMLES-QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI-KSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHHHHHhCC-CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhcCCC
Confidence 555544433 23445556777887776332 21 12234556666666666 345567888889999988765554
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhH
Q 004614 434 SQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTL 513 (742)
Q Consensus 434 ~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i 513 (742)
..-+++......||. .++.. + ... .++.....+-+++|...-.+|..++.- +-.+
T Consensus 371 ~~~~~i~~~~~~w~~--------------~~~~~-~--~~~-------~l~~~~~qPF~elr~a~~~~l~~l~~~-~Wg~ 425 (503)
T PF10508_consen 371 RQDNDILSITESWYE--------------SLSGS-P--LSN-------LLMSLLKQPFPELRCAAYRLLQALAAQ-PWGQ 425 (503)
T ss_pred CchHHHHHHHHHHHH--------------HhcCC-c--hHH-------HHHHHhcCCchHHHHHHHHHHHHHhcC-HHHH
Confidence 333333322333331 11000 0 000 223333445567766555666555433 1122
Q ss_pred Hhh--HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 004614 514 QLY--LGEIVSLICEGIASSSWSSKRKSAKAICKLGE 548 (742)
Q Consensus 514 ~~y--l~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~ 548 (742)
+.. .+.+++.++.--.+.+...+..=..++..|++
T Consensus 426 ~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 426 REICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred HHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 222 23455555544444555666555555666654
No 43
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=8.7e-05 Score=85.36 Aligned_cols=402 Identities=14% Similarity=0.204 Sum_probs=214.0
Q ss_pred hhhchhhhhhhHHHh-h-----------hcCCCCHHHHHHHHHHHHHhcc-CCH----------HHHHHHHHHHHHHHHH
Q 004614 108 DALKPHLRLLIPKLV-R-----------FQYDPDKNVQDAMAHIWKSLVA-DPK----------RTIDEHLDLIFDDLLI 164 (742)
Q Consensus 108 ~~l~~~l~~lip~L~-~-----------~~~Dp~~~VR~a~~~iw~~lv~-d~~----------~~i~~~~~~il~~Ll~ 164 (742)
..++||+.-++--.. . +-.||..-+|+-+ +||.-..+ ++. +--.+.|+.+|+.+.+
T Consensus 339 kll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~-Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~ 417 (1010)
T KOG1991|consen 339 KLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKF-DIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVD 417 (1010)
T ss_pred HHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcC-chhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 467888774443321 1 2238999999864 24443322 110 1114567777777766
Q ss_pred hhC--------CCChhHHHHHHHHHHHHhccCC-chhhhhHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH-Hhh
Q 004614 165 QSG--------SRLWRSREASCLSLADIIQGRK-FDQVGKHLR-RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLT-IRL 233 (742)
Q Consensus 165 ~l~--------~~~wrvR~aa~~Al~~L~~~~~-~~~l~~~L~-~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~-~r~ 233 (742)
-++ .+++|-.++|..++|.|.+--. ...+.+-+. -+.+.++-.+.+.-.-.|..| |+.++..+ +..
T Consensus 418 Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrara---c~vl~~~~~~df 494 (1010)
T KOG1991|consen 418 ILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARA---CWVLSQFSSIDF 494 (1010)
T ss_pred HHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHH---HHHHHHHHhccC
Confidence 554 3467999999999988875321 112222222 344456666677777778777 66665544 111
Q ss_pred hccccCccchhHhHHHHHhHHHhhcCCC-CChHHHHHHHHHHHHHHHHhcC---cccccchhhHHHHHHHhccccchHHH
Q 004614 234 CDVTLTEISDARQSMDIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAG---IAIRPHLSDLVSCMLESLSSLEDQGL 309 (742)
Q Consensus 234 ~~~~~~~~~~~~~~l~~lLP~Ll~~gl~-~~~~~vr~~a~~~L~~la~~~g---~~l~p~lp~Lv~~Ll~~ls~~e~~~~ 309 (742)
-+ +....++++.+.. ++. +..-+||--|..+|..+..... ..++||+|++|+.|+.+....|.+.
T Consensus 495 ~d-----~~~l~~ale~t~~-----~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~- 563 (1010)
T KOG1991|consen 495 KD-----PNNLSEALELTHN-----CLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD- 563 (1010)
T ss_pred CC-----hHHHHHHHHHHHH-----HhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH-
Confidence 11 1123334444444 444 3445788777777777777655 4499999999999998776543322
Q ss_pred HHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHh
Q 004614 310 NYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI 389 (742)
Q Consensus 310 ~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~ 389 (742)
+..++++++.. |
T Consensus 564 -----------------------------Lt~vme~iV~~---------------------------------------f 575 (1010)
T KOG1991|consen 564 -----------------------------LTNVMEKIVCK---------------------------------------F 575 (1010)
T ss_pred -----------------------------HHHHHHHHHHH---------------------------------------H
Confidence 12233333333 3
Q ss_pred cccccccHHHHHHHHhh----hhh--ccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 004614 390 GMDIKPYTSMLLRLLFP----VVK--EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKS 463 (742)
Q Consensus 390 g~~l~p~~~~ll~~Ll~----~l~--~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~ 463 (742)
+.++.||+..+.+.|.. .+. .|.++..-.....|+|-|- +...++.+
T Consensus 576 seElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~---------------------------Ti~Til~s 628 (1010)
T KOG1991|consen 576 SEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILR---------------------------TISTILLS 628 (1010)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHH---------------------------HHHHHHHH
Confidence 33333333322222221 111 2233444444555555441 11233333
Q ss_pred HHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCC---hhhHHhhHHHHHHHHHhhccCCCHHHHHHHH
Q 004614 464 YSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGD---RVTLQLYLGEIVSLICEGIASSSWSSKRKSA 540 (742)
Q Consensus 464 i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~---~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa 540 (742)
+ ...++.++...+.++|++-..... ++.+.+.++.+ ++.++ ...|.+-+-.+++++.+.+.+..-.-=....
T Consensus 629 ~-e~~p~vl~~le~~~l~vi~~iL~~---~i~dfyeE~~e-i~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~ 703 (1010)
T KOG1991|consen 629 L-ENHPEVLKQLEPIVLPVIGFILKN---DITDFYEELLE-IVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMM 703 (1010)
T ss_pred H-hccHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHH-HHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3 234566777777777776433221 12222222221 11111 1234455555666666665554433344444
Q ss_pred HHHHHHHHHhCcchhh---hHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHh
Q 004614 541 KAICKLGEILGESLSN---YHHVLLESIMKEVPGRL--WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR 615 (742)
Q Consensus 541 ~~lg~La~~~g~~~~~---~~~~l~p~L~~~l~~r~--~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~ 615 (742)
-++...+...+..+.. |...++..+.+.+.++. -+..+.+.+-+..++-+|++.+ .++.|.++......++
T Consensus 704 ~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~----dq~iplf~~~a~~~l~ 779 (1010)
T KOG1991|consen 704 PALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLL----DQYIPLFLELALSRLT 779 (1010)
T ss_pred HHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcH----hhHhHHHHHHHHHHHh
Confidence 4444444433333222 56677777777776543 3457778888888888888743 2467777777666666
Q ss_pred h--hCHHHHHHHHHH
Q 004614 616 K--KIKKYREAAFSC 628 (742)
Q Consensus 616 ~--~~~~~R~~a~~~ 628 (742)
+ ++..+|.-++..
T Consensus 780 ~~~e~s~~~~~~leV 794 (1010)
T KOG1991|consen 780 REVETSELRVMLLEV 794 (1010)
T ss_pred ccccchHHHHHHHHH
Confidence 5 566667666544
No 44
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.60 E-value=0.00014 Score=80.74 Aligned_cols=373 Identities=12% Similarity=0.103 Sum_probs=214.2
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhc-C-CC-C-ChHHHHHHHHHHHHH
Q 004614 202 TAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE-G-IL-S-KVDSISKASIGVVMK 277 (742)
Q Consensus 202 ~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~-g-l~-~-~~~~vr~~a~~~L~~ 277 (742)
|.++..+.|.....-..-...++.++.+|. ...++..++|.|+++ . .. + .+.+.-...+.++..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~------------~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~ 69 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALST------------SPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQS 69 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHC------------ChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 455666666544211222234556655541 345777788877763 0 11 0 134445567888888
Q ss_pred HHHhcCccc-----ccchhh-HHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcC
Q 004614 278 LVKGAGIAI-----RPHLSD-LVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD 351 (742)
Q Consensus 278 la~~~g~~l-----~p~lp~-Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d 351 (742)
+.+...... .-|... ++|.+++..-...+...+ .+..-++ .+...+..+++.++
T Consensus 70 ~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~----------~~~~~L~----------~~~~l~~~iv~~l~ 129 (415)
T PF12460_consen 70 LLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD----------LDDRVLE----------LLSRLINLIVRSLS 129 (415)
T ss_pred HHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc----------cchHHHH----------HHHHHHHHHHHhCC
Confidence 877654332 334443 777777665422110000 0001111 12345666677777
Q ss_pred hhHHhhHHHHHHHHHHc-----cCCC--c----hHhhHHHHHHHHHHHhccccc-ccHHHHHHHHhhhhhccccHHHHHH
Q 004614 352 TESLDQLVPHLARLVRS-----GIGL--N----TRVGVASFISLLVQKIGMDIK-PYTSMLLRLLFPVVKEEKSAAAKRA 419 (742)
Q Consensus 352 ~~~l~~lvp~L~~~l~~-----~~~~--~----~r~~a~~~l~~L~~~~g~~l~-p~~~~ll~~Ll~~l~~D~~~~Vr~~ 419 (742)
.+.-..++..+...... +... + ......-.+..+......+.. |....+++.++....+.+++.+|..
T Consensus 130 ~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 209 (415)
T PF12460_consen 130 PEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLA 209 (415)
T ss_pred HHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHH
Confidence 77666666666555431 0000 0 111222223333333344433 5677788888887755556889999
Q ss_pred HHHHHHHHHhhCC-HHHHHHHHHHHHHhh--cCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHH
Q 004614 420 FASACASVLKYAT-PSQAQKLIEETAALH--IDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSD 496 (742)
Q Consensus 420 ~~~al~~L~~~~~-~~~~~~li~~l~~~~--~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~ 496 (742)
++..++.++...+ ++.+.++++.+.... ..+...|..+..++.-+.|..--+-.+....++..++....+ +++..
T Consensus 210 ~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~ 287 (415)
T PF12460_consen 210 ALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQ 287 (415)
T ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHH
Confidence 9999999987654 445677777666655 234455555556666665544322223334444444433333 33322
Q ss_pred HHHHHHHHhcCC--------ChhhHH-----hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHH
Q 004614 497 LFEELWEENTSG--------DRVTLQ-----LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLL 562 (742)
Q Consensus 497 ~~~~~~~~~~~~--------~~~~i~-----~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~-~~~~~~~~l~ 562 (742)
...+.++-+... ....++ .+...+++.+.+...+.+-..|.....++.-+.+..+. -+.+++++++
T Consensus 288 ~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~Ll 367 (415)
T PF12460_consen 288 QAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLL 367 (415)
T ss_pred HHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 222222221111 112333 45667778888887777777888888999999998886 4667899999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHH
Q 004614 563 ESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSS 612 (742)
Q Consensus 563 p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~ 612 (742)
|.|++++.-...+.|...+++|..+++..++.+. ++.+.+++.+++
T Consensus 368 PLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~----~hl~sLI~~LL~ 413 (415)
T PF12460_consen 368 PLLLQSLSLPDADVLLSSLETLKMILEEAPELIS----EHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH----HHHHHHHHHHHh
Confidence 9999999877788999999999999987655443 356777777654
No 45
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.59 E-value=9.2e-07 Score=89.84 Aligned_cols=183 Identities=13% Similarity=0.071 Sum_probs=123.8
Q ss_pred CCchhHHHHHHHHHHHHhhc-----hhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHH
Q 004614 449 DDKNSQISCAILLKSYSSVA-----SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSL 523 (742)
Q Consensus 449 ~d~~~r~~a~~~l~~i~~~~-----~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~ 523 (742)
.|++.|..+..-+..+.+.. .+.|..++..+++.+.....|....|......++..+....+..+.+|.+.+++.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 36667777777777776655 2233344444455544444443333444444566666555566789999999999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHH-HHHHHHhcCCCChhhHHHHHHHHHHHHhhcc---cccCcCC
Q 004614 524 ICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVL-LESIMKEVPGRLWEGKDALLYAIGSISTSCH---KDISAED 599 (742)
Q Consensus 524 l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l-~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~---~~~~~~~ 599 (742)
+++.+.+..-.+|..|..+|..++..++ +.+.+ .+.+....+.+.+..|..++..+..++..++ ..+..
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~-- 171 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK-- 171 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG----
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc--
Confidence 9999999999999999999999999765 12345 7888888999999999999999999999887 22211
Q ss_pred CCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCC
Q 004614 600 PTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 600 ~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
....+.+++.+.+.+.|.++++|..|-.++..|...+|.
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 123578999999999999999999999999999999975
No 46
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=0.00034 Score=82.19 Aligned_cols=213 Identities=15% Similarity=0.069 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHH--hcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHhhc-CC
Q 004614 377 GVASFISLLVQK--IGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS---QAQKLIEETAALHI-DD 450 (742)
Q Consensus 377 ~a~~~l~~L~~~--~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~---~~~~li~~l~~~~~-~d 450 (742)
-+-++|..+.+. .......+++.+.+.+...+ ++....++..+..++..|++..+.+ .+.+.++.++=.+. .|
T Consensus 673 K~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~-qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n 751 (1176)
T KOG1248|consen 673 KAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSF-QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVN 751 (1176)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccccc
Confidence 344555555444 11122345667777788877 5667788889999999999998843 34555555554444 36
Q ss_pred chhHHHHHHHHHHHHh--hchhhh----hhhhhhhhhHhhHhhcCCchHHH-H---HHHHHHHHhcCCChhhHHhhHHHH
Q 004614 451 KNSQISCAILLKSYSS--VASDVL----SGYHAVIVPVIFISRFEDDKYVS-D---LFEELWEENTSGDRVTLQLYLGEI 520 (742)
Q Consensus 451 ~~~r~~a~~~l~~i~~--~~~~~~----~~~~~~vlP~l~~~~~d~~~~v~-~---~~~~~~~~~~~~~~~~i~~yl~~i 520 (742)
...|..+.+++..|++ ...+.- ...++.+++.+..+.-.+...++ . .+..+..+..... -..+++.+
T Consensus 752 ~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l---d~~~l~~l 828 (1176)
T KOG1248|consen 752 VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL---DDETLEKL 828 (1176)
T ss_pred HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHH
Confidence 6677777777777763 221111 23456666666655322222221 1 1224444433321 24688889
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccc
Q 004614 521 VSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (742)
Q Consensus 521 l~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~-~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~ 593 (742)
++.+.-+|.+.+.+++++|...+..++.+++. .+.+|+++++|.+....++..-..|-.+-.-|-.++++++-
T Consensus 829 i~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 829 ISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999999999987 57789999999999988776677888888888888888873
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.56 E-value=1.5e-06 Score=88.27 Aligned_cols=190 Identities=13% Similarity=0.105 Sum_probs=126.6
Q ss_pred hccccchhhhhhHHhhHHHHHHHh-----hhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 004614 83 ANYQVSLNSKRGAAFGFSKIAKQA-----GDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL 157 (742)
Q Consensus 83 ~~~~~~w~~r~~A~~~l~~i~~~~-----~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~ 157 (742)
.+++.+|..|..|.--+..++.+. .+.+-+.+.++++.+.....|.+..|.+.++.++..++...+..++.+++.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 455567999999999999987766 233445567777888889999999999999999999987666678889999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHH-HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhcc
Q 004614 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRI-WTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (742)
Q Consensus 158 il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i-~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~ 236 (742)
+++.|+..++++..-+|++|..++..+++.++ +...+ .+.+...+.+..+.||..+...+..+... ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~----~~~ 164 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEK----WGS 164 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----ccc
Confidence 99999999999888899999999999998776 22244 55566678999999999986655544221 110
Q ss_pred ccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCc
Q 004614 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (742)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~ 284 (742)
. ...-.....++.+.+.+.. ++.+.+++||..|-.++..+.+..|+
T Consensus 165 ~-~~~l~~~~~~~~l~~~l~~-~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 165 D-SSVLQKSAFLKQLVKALVK-LLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHH-HHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred h-HhhhcccchHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 0 0000112245667777654 67778999999999999998877664
No 48
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00014 Score=79.89 Aligned_cols=318 Identities=11% Similarity=0.034 Sum_probs=189.1
Q ss_pred HHHHHhHHHhhcCCC-CChHHHHHHHHHHHHHHHHhcCcccccch-hhHHHHHHHhccccchHHHHHHHHHhhhcCcchh
Q 004614 247 SMDIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAGIAIRPHL-SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTE 324 (742)
Q Consensus 247 ~l~~lLP~Ll~~gl~-~~~~~vr~~a~~~L~~la~~~g~~l~p~l-p~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~ 324 (742)
+...++|.+.+ .+. ++++.+|-.|.++|.+||....+.-+-++ ..-+|.|+.++.+....+..-..|..++.
T Consensus 106 i~~G~v~~lV~-~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNI----- 179 (514)
T KOG0166|consen 106 IQSGVVPRLVE-FLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNI----- 179 (514)
T ss_pred HHcCcHHHHHH-HHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcc-----
Confidence 44567777765 233 35688999999999999986543222111 24688899999887776654444444331
Q ss_pred hhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhc-ccccccHHHHHHH
Q 004614 325 KLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG-MDIKPYTSMLLRL 403 (742)
Q Consensus 325 ~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g-~~l~p~~~~ll~~ 403 (742)
+..||. +.+.+- + ...++.|+..+.........+.+.-++..|++... ..=......++++
T Consensus 180 ---------agds~~---~Rd~vl--~----~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~ 241 (514)
T KOG0166|consen 180 ---------AGDSPD---CRDYVL--S----CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA 241 (514)
T ss_pred ---------ccCChH---HHHHHH--h----hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 111111 111110 1 23455555555443333344455556666665442 1111236689999
Q ss_pred HhhhhhccccHHHHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhchhhhhh-hhh
Q 004614 404 LFPVVKEEKSAAAKRAFASACASVLKYATPSQ----AQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSG-YHA 477 (742)
Q Consensus 404 Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~----~~~li~~l~~~~~~-d~~~r~~a~~~l~~i~~~~~~~~~~-~~~ 477 (742)
|...+ ...++.|...++-|++||....++.. -...++++++++.. +...+..+-.+++.|.......-+- .-.
T Consensus 242 L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~ 320 (514)
T KOG0166|consen 242 LLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS 320 (514)
T ss_pred HHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence 99999 67889999999999999987776542 13557778877753 3344544545555554332222111 113
Q ss_pred hhhhHhhHhhc-CCchHHHHHHHHHHHHhcCCChhhHHhhHH-HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchh
Q 004614 478 VIVPVIFISRF-EDDKYVSDLFEELWEENTSGDRVTLQLYLG-EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLS 555 (742)
Q Consensus 478 ~vlP~l~~~~~-d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~-~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~ 555 (742)
..+|.+..... .+.+.++....-+...++.|....++...+ .+++.++..+.+.+.++|+-|+.+|+.++.....+-.
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence 45566544444 344446665555567777888777876654 6889999999999999999999999999875433222
Q ss_pred hhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHh
Q 004614 556 NYH--HVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (742)
Q Consensus 556 ~~~--~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~ 589 (742)
.|+ .-+++.+...|.-.....=..++.++..+..
T Consensus 401 ~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 401 KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 221 1244555555533222233455666665554
No 49
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00093 Score=75.53 Aligned_cols=387 Identities=12% Similarity=0.092 Sum_probs=203.7
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccc
Q 004614 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (742)
Q Consensus 158 il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~ 237 (742)
+...|.+-+++.+ .-..|+||..|-.-++ +++.+ ++.|.+.+.++..++.||+-|.-.+-.+ +|.
T Consensus 108 ltNslknDL~s~n---q~vVglAL~alg~i~s-~Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~----irK---- 172 (866)
T KOG1062|consen 108 LTNSLKNDLNSSN---QYVVGLALCALGNICS-PEMAR---DLAPEVERLLQHRDPYIRKKAALCAVRF----IRK---- 172 (866)
T ss_pred HHHHHHhhccCCC---eeehHHHHHHhhccCC-HHHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHH----HHc----
Confidence 3344444455544 4455666666554455 55555 7777778889999999999875444333 222
Q ss_pred cCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhh
Q 004614 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (742)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~ 317 (742)
....++.++|.... -|.+.+..|=...+..+.++++...+.+. |.-++++.|...|.+.-.. +| ..
T Consensus 173 ------~P~l~e~f~~~~~~-lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~--~y----sp 238 (866)
T KOG1062|consen 173 ------VPDLVEHFVIAFRK-LLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNS--GY----SP 238 (866)
T ss_pred ------CchHHHHhhHHHHH-HHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcC--CC----CC
Confidence 12244445544322 12333445555667778888887554433 3344666665555421000 00 00
Q ss_pred hcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccH
Q 004614 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT 397 (742)
Q Consensus 318 ~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~ 397 (742)
+|++ ..+ +.|.. .--+=+++.++... +....-.-.+++..+++++...= .-.
T Consensus 239 eydv--~gi---------~dPFL---------------Qi~iLrlLriLGq~-d~daSd~M~DiLaqvatntdssk-N~G 290 (866)
T KOG1062|consen 239 EYDV--HGI---------SDPFL---------------QIRILRLLRILGQN-DADASDLMNDILAQVATNTDSSK-NAG 290 (866)
T ss_pred ccCc--cCC---------CchHH---------------HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcccccc-cch
Confidence 0100 000 01111 00111111222111 11111122233333333321110 011
Q ss_pred HHHHHHHhhhh-hccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhh
Q 004614 398 SMLLRLLFPVV-KEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYH 476 (742)
Q Consensus 398 ~~ll~~Ll~~l-~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~ 476 (742)
..|+=.++..+ .=+.+...|..++..+|..+. ..|.+.|-.+-..+..+...-+...+.|.
T Consensus 291 nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~------------------n~d~NirYvaLn~L~r~V~~d~~avqrHr 352 (866)
T KOG1062|consen 291 NAILYECVRTIMDIRSNSGLRVLAINILGKFLL------------------NRDNNIRYVALNMLLRVVQQDPTAVQRHR 352 (866)
T ss_pred hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc------------------CCccceeeeehhhHHhhhcCCcHHHHHHH
Confidence 11111111111 013566777777777765541 24566777777777777777777778887
Q ss_pred hhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 004614 477 AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (742)
Q Consensus 477 ~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~ 556 (742)
..++ .+..|+|..++.-..|+.-.++.+ .-++..+++++ .+|.+.+...|-..+..+..+++++...=.=
T Consensus 353 ~tIl----eCL~DpD~SIkrralELs~~lvn~--~Nv~~mv~eLl----~fL~~~d~~~k~~~as~I~~laEkfaP~k~W 422 (866)
T KOG1062|consen 353 STIL----ECLKDPDVSIKRRALELSYALVNE--SNVRVMVKELL----EFLESSDEDFKADIASKIAELAEKFAPDKRW 422 (866)
T ss_pred HHHH----HHhcCCcHHHHHHHHHHHHHHhcc--ccHHHHHHHHH----HHHHhccHHHHHHHHHHHHHHHHhcCCcchh
Confidence 7654 567888888876555655455444 24555555554 5566667889999999999999987653223
Q ss_pred hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHH--HhhhCHHHHHHHHHHHHHHHH
Q 004614 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSA--CRKKIKKYREAAFSCLEQVIK 634 (742)
Q Consensus 557 ~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~--~~~~~~~~R~~a~~~Lg~l~~ 634 (742)
|+++++..|..+=. -+|+.++.+|..++.+.....+ .-....+...+... +.-++..+.+.|+||+|+|..
T Consensus 423 ~idtml~Vl~~aG~----~V~~dv~~nll~LIa~~~~e~~---~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGd 495 (866)
T KOG1062|consen 423 HIDTMLKVLKTAGD----FVNDDVVNNLLRLIANAFQELH---EYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGD 495 (866)
T ss_pred HHHHHHHHHHhccc----ccchhhHHHHHHHHhcCCcchh---hHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhH
Confidence 67777776654322 2678888898888876522221 11122233332221 112467789999999999985
Q ss_pred Hc
Q 004614 635 AF 636 (742)
Q Consensus 635 ~~ 636 (742)
.+
T Consensus 496 ll 497 (866)
T KOG1062|consen 496 LL 497 (866)
T ss_pred Hh
Confidence 44
No 50
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.38 E-value=0.0034 Score=75.49 Aligned_cols=423 Identities=13% Similarity=0.090 Sum_probs=214.4
Q ss_pred hhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcc
Q 004614 108 DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (742)
Q Consensus 108 ~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~ 187 (742)
..+++||..|+..| ..|.+.||..+..|...++.-++... ..+.+-..+...+.|..-.||++|.--+|.++-.
T Consensus 812 ~sfD~yLk~Il~~l----~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVL----GENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred HhhHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence 45677777777665 79999999999999999986443322 2455666677888898899999999888888876
Q ss_pred CCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHH-
Q 004614 188 RKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDS- 266 (742)
Q Consensus 188 ~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~- 266 (742)
.+ +-+..|+.+|...+ .|..-+||+-+ ++-+..+|...- +...+.+.....| .+ .+|.++
T Consensus 886 ~~-e~~~qyY~~i~erI----lDtgvsVRKRv---IKIlrdic~e~p--------df~~i~~~cakml-rR--v~DEEg~ 946 (1692)
T KOG1020|consen 886 IP-ELIFQYYDQIIERI----LDTGVSVRKRV---IKILRDICEETP--------DFSKIVDMCAKML-RR--VNDEEGN 946 (1692)
T ss_pred cH-HHHHHHHHHHHhhc----CCCchhHHHHH---HHHHHHHHHhCC--------ChhhHHHHHHHHH-HH--hccchhH
Confidence 65 66777777776654 67777899988 444444442221 1333333333333 23 334444
Q ss_pred HHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHH
Q 004614 267 ISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLC 346 (742)
Q Consensus 267 vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~ 346 (742)
+++.+++++.++= |.|- |.+ ++ .....|. ..-..+.+..+
T Consensus 947 I~kLv~etf~klW------F~p~----------------~~~-~d-------------~~~~~~k----I~~~~~vv~~~ 986 (1692)
T KOG1020|consen 947 IKKLVRETFLKLW------FTPV----------------PEV-ND-------------QPAKARK----ISLEVDVVMSQ 986 (1692)
T ss_pred HHHHHHHHHHHHh------ccCC----------------Ccc-cc-------------cHHHHHh----hHHHHHHHHHH
Confidence 8888888886653 2111 000 00 0000000 00000111111
Q ss_pred HhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHH
Q 004614 347 INVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACAS 426 (742)
Q Consensus 347 ~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~ 426 (742)
. .+..+-++.++-.+++.-.. . +.. ...+|.....++..+..+
T Consensus 987 ~-d~~~~~~eqLl~~ilk~~~~---~-~~~--------------~~~~~v~~~~v~~~~~L~------------------ 1029 (1692)
T KOG1020|consen 987 V-DLMNDWLEQLLDHILKFYLL---K-TMK--------------ESVKPVALAKVTHVLNLL------------------ 1029 (1692)
T ss_pred H-HHhcChHHHHHHHHHHHHHh---h-hhh--------------hhhhHHHHhhcchHHHHH------------------
Confidence 1 11111122222222111000 0 000 011111111111111100
Q ss_pred HHhhCCHHHHHHHHHHHH-Hhhc-CCchhHHHHHHHHHHHHhhchhhhh-hhhhhhhhHhhHhhcCCc-hHHHHHHHHHH
Q 004614 427 VLKYATPSQAQKLIEETA-ALHI-DDKNSQISCAILLKSYSSVASDVLS-GYHAVIVPVIFISRFEDD-KYVSDLFEELW 502 (742)
Q Consensus 427 L~~~~~~~~~~~li~~l~-~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~-~~~~~vlP~l~~~~~d~~-~~v~~~~~~~~ 502 (742)
-.-...++++--. .... +++..-..+..++..+++.-|..+. .|.-.+.|.+-...+... ..+-.....++
T Consensus 1030 -----~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Il 1104 (1692)
T KOG1020|consen 1030 -----THCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQIL 1104 (1692)
T ss_pred -----HHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHH
Confidence 0000000000000 0000 1122233455777788888887776 788888888755422211 12222223333
Q ss_pred HHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchh---hhHHH---HHHHHHHhcCCC----
Q 004614 503 EENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLS---NYHHV---LLESIMKEVPGR---- 572 (742)
Q Consensus 503 ~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~---~~~~~---l~p~L~~~l~~r---- 572 (742)
+..++-.+..-..++..+-+-++..+...+...-..|..|||.++.+.-..+. .-+.. .++.+.+...+-
T Consensus 1105 e~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~ 1184 (1692)
T KOG1020|consen 1105 ECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIV 1184 (1692)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 33222211112345666666666666666667777788999999987543322 11222 223332222222
Q ss_pred ChhhHHHHHHHHHHHHhhcccccC-----cC----CCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCC
Q 004614 573 LWEGKDALLYAIGSISTSCHKDIS-----AE----DPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 573 ~~~~ke~vl~aL~~l~~~~~~~~~-----~~----~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
..+.=...+-++|.+++-+. ... +. .....+.++..+..-++..+..+|+.|+..||.++-.-++
T Consensus 1185 ~~p~l~RsiftlG~l~Ryfd-f~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~ 1258 (1692)
T KOG1020|consen 1185 NFPKLQRSIFTLGLLSRYFD-FPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPS 1258 (1692)
T ss_pred hhHHHHHHHHHHHHHHHhcc-CCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCch
Confidence 22223345667788877321 111 11 1123456666677777788899999999999999987764
No 51
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.35 E-value=0.0052 Score=72.65 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=87.2
Q ss_pred hHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh-CcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhh
Q 004614 512 TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL-GESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (742)
Q Consensus 512 ~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~-g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~ 590 (742)
.+.+ +-..++.+..+..+....+|-+||+|++++.... ++.+...+..++|.+-. +. ....|.++...+..+...
T Consensus 810 ~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~-~~--~~~~r~~a~e~~~~l~~~ 885 (1549)
T KOG0392|consen 810 FLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGD-LD--KFVRRQGADELIELLDAV 885 (1549)
T ss_pred hhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-hh--hHhhhhhHHHHHHHHHHh
Confidence 3444 4455667778888999999999999999999763 44444445666655421 11 244567777777777765
Q ss_pred cccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcC
Q 004614 591 CHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (742)
Q Consensus 591 ~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~ 637 (742)
...++ .++.+-+++.+.+.+.+....+|.+|-.++..++...+
T Consensus 886 l~~~l----~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 886 LMVGL----VPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred hcccc----cccceeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 55444 46788899999999999999999999999999999886
No 52
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.31 E-value=0.015 Score=66.82 Aligned_cols=291 Identities=12% Similarity=0.057 Sum_probs=155.7
Q ss_pred ccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHhhchh
Q 004614 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKY--ATPSQAQKLIEETAALHID--DKNSQISCAILLKSYSSVASD 470 (742)
Q Consensus 395 p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~--~~~~~~~~li~~l~~~~~~--d~~~r~~a~~~l~~i~~~~~~ 470 (742)
.+++.+...+..++.....+..--++.-+++..... ...+....++......... -+-.|..+...+..+++ +.
T Consensus 445 d~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~ 522 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VK 522 (1005)
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ce
Confidence 344444545555553223343333555556554443 2234445555554444432 23346555555555542 23
Q ss_pred hhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCCh---hhH-HhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 004614 471 VLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR---VTL-QLYLGEIVSLICEGIASSSWSSKRKSAKAICKL 546 (742)
Q Consensus 471 ~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~---~~i-~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~L 546 (742)
.+.+..+.++-.+.....+..+++-.+..+.+.-.+.-.+ ..+ ...+|.++.++..+-+|+ .+-..+-.++-++
T Consensus 523 vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el 600 (1005)
T KOG2274|consen 523 VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP--QVASLAQDLFEEL 600 (1005)
T ss_pred eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHH
Confidence 3455556666555544445556665554454433222111 112 245677888888887777 4555555555555
Q ss_pred HHHhCcchhhhHHHHHHHHHHhcCCCC---hhhH-HHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHH-HhhhCHHH
Q 004614 547 GEILGESLSNYHHVLLESIMKEVPGRL---WEGK-DALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSA-CRKKIKKY 621 (742)
Q Consensus 547 a~~~g~~~~~~~~~l~p~L~~~l~~r~---~~~k-e~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~-~~~~~~~~ 621 (742)
+.. .....|+-..++|.+++.+.... ..+. .-++.-|..++++.+.-+.. .+.....+++.+. +-..+-.+
T Consensus 601 ~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~---~l~~~~FpaVak~tlHsdD~~t 676 (1005)
T KOG2274|consen 601 LQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPN---LLICYAFPAVAKITLHSDDHET 676 (1005)
T ss_pred HHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccH---HHHHHHhHHhHhheeecCChHH
Confidence 542 12334456678888888885433 3333 34566677788877643311 1223334444443 23346678
Q ss_pred HHHHHHHHHHHHHHcC--------CC-chHHhHHHHHHhhhcCccccCCCCCCCCCCCCcccc----cc-ccCCcch-hh
Q 004614 622 REAAFSCLEQVIKAFR--------DP-KFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEES----AD-ESVSAPL-DK 686 (742)
Q Consensus 622 R~~a~~~Lg~l~~~~~--------~~-~~~~~v~~il~~~~~~~~~~~~~~~~a~~~~a~~~~----~~-~~~~~p~-~~ 686 (742)
-+.+-.||..|+.+-. ++ .-...+..++..+.+...- ..++ +++|.-= +| +.-+.|. ++
T Consensus 677 lQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~s-----ds~a-~~VG~lV~tLit~a~~el~~n~d~ 750 (1005)
T KOG2274|consen 677 LQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETS-----DSAA-AFVGPLVLTLITHASSELGPNLDQ 750 (1005)
T ss_pred HHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccc-----hhHH-HHHhHHHHHHHHHHHHHhchhHHH
Confidence 8888888888887622 11 2244666777777665421 1111 1222111 56 8889998 99
Q ss_pred hhhhhhhHHHhhc
Q 004614 687 VLDCVSSCIHVAH 699 (742)
Q Consensus 687 i~~~~~~a~~~~~ 699 (742)
|+..+++-++...
T Consensus 751 IL~Avisrmq~ae 763 (1005)
T KOG2274|consen 751 ILRAVISRLQQAE 763 (1005)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999886533
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0032 Score=71.01 Aligned_cols=434 Identities=12% Similarity=0.060 Sum_probs=207.7
Q ss_pred hhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHH
Q 004614 123 RFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWT 202 (742)
Q Consensus 123 ~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~ 202 (742)
+.++|||+.+|.++..+...+. +.-..+-+|-.+-+...|..++||+.|+.||--|..-.+ ++. + ++..
T Consensus 115 k~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k-~---qL~e 183 (968)
T KOG1060|consen 115 KALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQK-D---QLEE 183 (968)
T ss_pred hhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhH-H---HHHH
Confidence 4567999999999988776654 444566777788889999999999999999999987543 322 2 4444
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCC-ChHHHHHHHHHHHHHHHHh
Q 004614 203 AAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS-KVDSISKASIGVVMKLVKG 281 (742)
Q Consensus 203 ~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~-~~~~vr~~a~~~L~~la~~ 281 (742)
.+-.+|.|..+-|--+|.-+++.+ |...++-- .+ ....+-. .+.+ +.|. |...+.+|.+-|+.
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~ev---CPerldLI------Hk-nyrklC~-----ll~dvdeWg-QvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEV---CPERLDLI------HK-NYRKLCR-----LLPDVDEWG-QVVLINMLTRYARH 247 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHh---chhHHHHh------hH-HHHHHHh-----hccchhhhh-HHHHHHHHHHHHHh
Confidence 444458999999988886555543 21111100 00 0011111 1111 2232 34456666665553
Q ss_pred cCcccccchhhHHHHHHHhcc--ccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCC---------cHHHHHHHHHhhc
Q 004614 282 AGIAIRPHLSDLVSCMLESLS--SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGS---------PMWDTLDLCINVV 350 (742)
Q Consensus 282 ~g~~l~p~lp~Lv~~Ll~~ls--~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s---------~l~~al~~~~~~~ 350 (742)
.= .+|.. +...++-=. ...+...+++. .-|..+ .++|+-.-... ..|.+.+......
T Consensus 248 ~l--~~P~~---~~~~~e~n~~~~~~~~~~~~~~---~P~~~d----~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA 315 (968)
T KOG1060|consen 248 QL--PDPTV---VDSSLEDNGRSCNLKDKYNEIR---TPYVND----PDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA 315 (968)
T ss_pred cC--CCccc---cccccccCcccccccccccccC---CCcccC----ccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC
Confidence 21 11211 000000000 00000000000 000000 00111111111 1222222222222
Q ss_pred ChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhh
Q 004614 351 DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKY 430 (742)
Q Consensus 351 d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~ 430 (742)
-...+..++..|+.++++.- .++--..+.|..++.+.+..|.||+..+. + -..++...+.+ -+..|...
T Consensus 316 P~~~~~~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~~~lF~P~lKsFf------v-~ssDp~~vk~l--KleiLs~L 384 (968)
T KOG1060|consen 316 PKNQVTKIAKALVRLLRSNR--EVQYVVLQNIATISIKRPTLFEPHLKSFF------V-RSSDPTQVKIL--KLEILSNL 384 (968)
T ss_pred CHHHHHHHHHHHHHHHhcCC--cchhhhHHHHHHHHhcchhhhhhhhhceE------e-ecCCHHHHHHH--HHHHHHHH
Confidence 22345667778888887643 23444556666677788888888876542 1 11223333322 12222233
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCCh
Q 004614 431 ATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR 510 (742)
Q Consensus 431 ~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~ 510 (742)
+++..+..++..+..... +.+. ..++.++.+|++++.. .....+..+--+...+...++.|.....-+..-++...+
T Consensus 385 a~esni~~ILrE~q~YI~-s~d~-~faa~aV~AiGrCA~~-~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 385 ANESNISEILRELQTYIK-SSDR-SFAAAAVKAIGRCASR-IGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred hhhccHHHHHHHHHHHHh-cCch-hHHHHHHHHHHHHHHh-hCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 344444444444443332 2222 3566777777766532 223344444444333333455544433333344444333
Q ss_pred hhHHhhHHHHHHHHHhhccCCC-HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh
Q 004614 511 VTLQLYLGEIVSLICEGIASSS-WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (742)
Q Consensus 511 ~~i~~yl~~il~~l~~~L~~~s-w~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~ 589 (742)
...-. |+.-+.+.++... ..-|.+..-.+|.-|+..+. ..|.++-.+.+.+......+|..||.--+.+--
T Consensus 462 ~~h~~----ii~~La~lldti~vp~ARA~IiWLige~~e~vpr----i~PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 462 AEHLE----ILFQLARLLDTILVPAARAGIIWLIGEYCEIVPR----IAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred HHHHH----HHHHHHHHhhhhhhhhhhceeeeeehhhhhhcch----hchHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 22212 2222223332211 11233333446766665321 256788888888888778899888876655432
Q ss_pred hcccccCcCCCCchHHHHHHHHHHHhh-hCHHHHHHH
Q 004614 590 SCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAA 625 (742)
Q Consensus 590 ~~~~~~~~~~~~~~~~iv~~l~~~~~~-~~~~~R~~a 625 (742)
.- ..-+..++.++....+- .++.+|-.|
T Consensus 534 ~~--------~~~~kll~~Yv~~L~~yD~sYDiRDRa 562 (968)
T KOG1060|consen 534 TN--------IDQTKLLVQYVFELARYDLSYDIRDRA 562 (968)
T ss_pred ec--------hhhHHHHHHHHHHHhccCCCcchhHHH
Confidence 11 12245566666655432 244444433
No 54
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.30 E-value=1.1e-06 Score=67.34 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHH
Q 004614 171 WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLC 223 (742)
Q Consensus 171 wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~ 223 (742)
|+||++|+++||.+.+..+ +.+.+|++++++.+...++|.++.||.+|..++
T Consensus 1 p~vR~~A~~aLg~l~~~~~-~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aL 52 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCP-ELLQPYLPELLPALIPLLQDDDDSVRAAAAWAL 52 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTH-HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8999999999999776655 889999999999999999999999999994443
No 55
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.27 E-value=4.1e-05 Score=89.28 Aligned_cols=286 Identities=12% Similarity=0.095 Sum_probs=180.6
Q ss_pred HhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCH-
Q 004614 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP- 433 (742)
Q Consensus 355 l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~- 433 (742)
+--+++.+...+|.-....+|..|...+..|.+....+. -++++++-++..+ .|....||..+..++..++....+
T Consensus 420 a~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 420 AVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred eeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCC
Confidence 344778887777765455788899998888877665554 5788999899888 799999999998888887765442
Q ss_pred --HH---H-HHHHHHHHHhhcC--CchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhc-CCc----------hH-
Q 004614 434 --SQ---A-QKLIEETAALHID--DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF-EDD----------KY- 493 (742)
Q Consensus 434 --~~---~-~~li~~l~~~~~~--d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~-d~~----------~~- 493 (742)
.. . +-+.+.+.++..+ ....|.+.|..+..+++.+.. |..+....= ..+|. +++ .+
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r-Fle~~q~~~---~~g~~n~~nset~~~~~~~~~~ 572 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR-FLELTQELR---QAGMLNDPNSETAPEQNYNTEL 572 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH-HHHHHHHHH---hcccccCcccccccccccchHH
Confidence 11 2 3334445555433 244688888888888776532 211111100 00111 100 00
Q ss_pred --HHHHHHHHHHHhcCCChhhHH-h----------------hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcc-
Q 004614 494 --VSDLFEELWEENTSGDRVTLQ-L----------------YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES- 553 (742)
Q Consensus 494 --v~~~~~~~~~~~~~~~~~~i~-~----------------yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~- 553 (742)
+.....+....++.+.+.-++ - --+-|+..++.+|.|.+|.+|-+-...|.-++--.|..
T Consensus 573 ~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs 652 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS 652 (1431)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee
Confidence 111111222222222221111 0 11345677888899999999998777777666555543
Q ss_pred hhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 004614 554 LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVI 633 (742)
Q Consensus 554 ~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~ 633 (742)
++ +-++|.|+++|.++++-+=..+|.+|..+++.. .+. .+..-+|++.+.-.+...|.=+|+.++.-+....
T Consensus 653 ~s---eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~---K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 653 VS---EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLR---KPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred HH---HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccc---hHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence 33 458899999999999888888888888888632 121 2345566666666677778889999999999988
Q ss_pred HHcCCCchHHhHHHHHHhhhcC
Q 004614 634 KAFRDPKFFNIIFPLLFEMCGS 655 (742)
Q Consensus 634 ~~~~~~~~~~~v~~il~~~~~~ 655 (742)
..+...+.+-++.|++.-....
T Consensus 725 ~~ls~advyc~l~P~irpfl~~ 746 (1431)
T KOG1240|consen 725 RQLSAADVYCKLMPLIRPFLER 746 (1431)
T ss_pred hhhhhhhheEEeehhhHHhhhc
Confidence 8887655555566666555443
No 56
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.018 Score=65.71 Aligned_cols=465 Identities=14% Similarity=0.120 Sum_probs=219.3
Q ss_pred HHHHHHHHhcc-ccchhhhhhHHhhHHHHHHHh----hhh---hchhhh-hhhHHHhhhcCCCCHHHHHHHHHHHHHhcc
Q 004614 75 LIYKFMDLANY-QVSLNSKRGAAFGFSKIAKQA----GDA---LKPHLR-LLIPKLVRFQYDPDKNVQDAMAHIWKSLVA 145 (742)
Q Consensus 75 lv~~fm~l~~~-~~~w~~r~~A~~~l~~i~~~~----~~~---l~~~l~-~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~ 145 (742)
.-..++++..+ +.+.+.|-+|+..|-.-+++- .+. +-..-. ++-.-++..+....+.++.-...+...+..
T Consensus 38 y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~ 117 (960)
T KOG1992|consen 38 YPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGK 117 (960)
T ss_pred chHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhc
Confidence 33455555433 323555666666666644421 111 110111 222222334556667777777777766553
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccC---------------
Q 004614 146 DPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD--------------- 210 (742)
Q Consensus 146 d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D--------------- 210 (742)
....+-++.++++|.+.+++.+..+-.++...-..+......+ ..=+++|..+-.++|.
T Consensus 118 ---~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~e---frSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l 191 (960)
T KOG1992|consen 118 ---RDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPE---FRSDALWLEIKLVLDRFAEPLTDLFRKTMEL 191 (960)
T ss_pred ---cccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcc---cccHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 1245678999999999999888777666665555555432211 1112344433333321
Q ss_pred --CcHHHHHHHHHHHHHH---HHHHHhhhccccCccchhHhHHHHHhHHHhhc------CCCCC------hHHHHHHHHH
Q 004614 211 --IKETVRTAGDKLCRSV---TSLTIRLCDVTLTEISDARQSMDIVLPFLLAE------GILSK------VDSISKASIG 273 (742)
Q Consensus 211 --~~~~VR~aA~~~~~~l---~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~------gl~~~------~~~vr~~a~~ 273 (742)
.++.-..+-..++..+ .++...++- ..-++.....++.-|+.+... .+.++ -.++|...|+
T Consensus 192 ~~~~~~~~~~l~~lf~vlll~~klfysLn~--QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICE 269 (960)
T KOG1992|consen 192 IQRHANDAAALNILFGVLLLICKLFYSLNF--QDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICE 269 (960)
T ss_pred HhhcccchhHHHHHHHHHHHHHHHHHhhhc--ccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHH
Confidence 0110000111111111 111111100 001122233344444443320 12221 2567777888
Q ss_pred HHHHHHHhcCcccccchhhHHHHHHHhccccchHH-HHHHHHHhhhc--Ccc-hhhhhHHhhhhccCCcHHHHHHHH---
Q 004614 274 VVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQG-LNYIELHAANA--GIQ-TEKLENLRISIAKGSPMWDTLDLC--- 346 (742)
Q Consensus 274 ~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~-~~~~~~~a~~~--~~~-~~~~d~~r~~~~~~s~l~~al~~~--- 346 (742)
.+.--+.+..+.+.||+|+.|...-.++.+..+.. ..++.-+|-.+ ++. ..--.+. ....+.+.+.++.+
T Consensus 270 i~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~---F~~~~vl~~i~e~Vvlp 346 (960)
T KOG1992|consen 270 IFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAEL---FEGENVLAQICEKVVLP 346 (960)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhh---hcchHHHHHHHHhhccc
Confidence 88777888888999999999977666665433321 12222111000 000 0000000 01111223333332
Q ss_pred ---HhhcChhHHhh-HHHHHHHHHHccCCCch-HhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHH
Q 004614 347 ---INVVDTESLDQ-LVPHLARLVRSGIGLNT-RVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (742)
Q Consensus 347 ---~~~~d~~~l~~-lvp~L~~~l~~~~~~~~-r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~ 421 (742)
.+.-|+|.+++ -+.++-.-++ +.+..+ |++|++.+..|+.++...+.+-.+..++.++.....+++..=++..
T Consensus 347 N~~lR~eDeElFED~pleYiRRDlE-GsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd- 424 (960)
T KOG1992|consen 347 NLILREEDEELFEDNPLEYIRRDLE-GSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKD- 424 (960)
T ss_pred ccccchhhHHHhccCHHHHHHHhcc-cCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccc-
Confidence 22234554433 3333222222 234454 4589999999999998877777777777777766433332221110
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh-------------chhhhhhhhhhhhhHhhHhhc
Q 004614 422 SACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSV-------------ASDVLSGYHAVIVPVIFISRF 488 (742)
Q Consensus 422 ~al~~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~-------------~~~~~~~~~~~vlP~l~~~~~ 488 (742)
.+..++.+++-. ..+...=+...++|-+...-.
T Consensus 425 ----------------------------------~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v 470 (960)
T KOG1992|consen 425 ----------------------------------RAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV 470 (960)
T ss_pred ----------------------------------hhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc
Confidence 011111111100 011111223445565443111
Q ss_pred CCchHHHHHHH---HHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc---------chhh
Q 004614 489 EDDKYVSDLFE---ELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE---------SLSN 556 (742)
Q Consensus 489 d~~~~v~~~~~---~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~---------~~~~ 556 (742)
.+.+-++.-.. -+.....+ +.++-++++.+.+.|+..+.-|..-||.++..+-...+. .+.|
T Consensus 471 n~~pilka~aIKy~~~FR~ql~------~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap 544 (960)
T KOG1992|consen 471 NEFPILKADAIKYIYTFRNQLG------KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAP 544 (960)
T ss_pred ccccchhhcccceeeeecccCC------hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcch
Confidence 11111221100 00111001 345667788888999999999999999999988765443 4556
Q ss_pred hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcc
Q 004614 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (742)
Q Consensus 557 ~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~ 592 (742)
+...++.-|.++++-..-..-+-+.+++--++.-..
T Consensus 545 ~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~ 580 (960)
T KOG1992|consen 545 FVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQ 580 (960)
T ss_pred HHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCH
Confidence 667777777777632211222444555444444333
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0036 Score=70.01 Aligned_cols=254 Identities=13% Similarity=0.131 Sum_probs=140.4
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004614 199 RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKL 278 (742)
Q Consensus 199 ~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~l 278 (742)
++-+-+|..|...++.||+-|..+ +-+++.++ .+.+....|-|.++ |.++++.|+++|..++.+|
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~---lykvFLkY-----------PeAlr~~FprL~Ek-LeDpDp~V~SAAV~VICEL 208 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILL---LYKVFLKY-----------PEALRPCFPRLVEK-LEDPDPSVVSAAVSVICEL 208 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHH---HHHHHHhh-----------hHhHhhhHHHHHHh-ccCCCchHHHHHHHHHHHH
Confidence 666777888999999999987433 33444443 23566678888774 7778999999999999999
Q ss_pred HHhcCcccccchhhHHHHHHHhcccc-chHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcC-hhHH-
Q 004614 279 VKGAGIAIRPHLSDLVSCMLESLSSL-EDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD-TESL- 355 (742)
Q Consensus 279 a~~~g~~l~p~lp~Lv~~Ll~~ls~~-e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d-~~~l- 355 (742)
|+.-.+...|..| .|..+|-+. ..|++ ...|.-+....- +..+
T Consensus 209 ArKnPknyL~LAP----~ffkllttSsNNWmL------------------------------IKiiKLF~aLtplEPRLg 254 (877)
T KOG1059|consen 209 ARKNPQNYLQLAP----LFYKLLVTSSNNWVL------------------------------IKLLKLFAALTPLEPRLG 254 (877)
T ss_pred HhhCCcccccccH----HHHHHHhccCCCeeh------------------------------HHHHHHHhhccccCchhh
Confidence 9988876555444 444444321 12321 111211111100 1112
Q ss_pred hhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHH
Q 004614 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ 435 (742)
Q Consensus 356 ~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~ 435 (742)
..++|.|.+++++.+.+..--+|++.+... .+..+. .|....+
T Consensus 255 KKLieplt~li~sT~AmSLlYECvNTVVa~-----------------s~s~g~-~d~~asi------------------- 297 (877)
T KOG1059|consen 255 KKLIEPITELMESTVAMSLLYECVNTVVAV-----------------SMSSGM-SDHSASI------------------- 297 (877)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHheee-----------------hhccCC-CCcHHHH-------------------
Confidence 467777777776532222222333333110 111222 1221111
Q ss_pred HHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHH
Q 004614 436 AQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQ 514 (742)
Q Consensus 436 ~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~ 514 (742)
+--+.++..+.. +|++.|-....+++-|.+..+...+.+-+.+ +.++.|.|+.+|--..+++.+++.-
T Consensus 298 -qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlI----lrcL~DkD~SIRlrALdLl~gmVsk------ 366 (877)
T KOG1059|consen 298 -QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLI----LRCLDDKDESIRLRALDLLYGMVSK------ 366 (877)
T ss_pred -HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHH----HHHhccCCchhHHHHHHHHHHHhhh------
Confidence 111222333332 4677777777888888888887766666644 4567788888877666766655432
Q ss_pred hhHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHH
Q 004614 515 LYLGEIVSLICEGIASSSW-SSKRKSAKAICKLGEI 549 (742)
Q Consensus 515 ~yl~~il~~l~~~L~~~sw-~vR~~Aa~~lg~La~~ 549 (742)
.-+.+|+..+..+....+- ..|-.-..-|-.+|+.
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 3344555555555443332 4455444445555543
No 58
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.24 E-value=6.7e-05 Score=87.54 Aligned_cols=144 Identities=8% Similarity=-0.001 Sum_probs=97.1
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhH
Q 004614 405 FPVVKEEKSAAAKRAFASACASVLKYATPSQAQ-KLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPV 482 (742)
Q Consensus 405 l~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~-~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~ 482 (742)
+..|..|..+-||++...+|+.||...+.+.-+ -++.+++..+. .|+..|.+..+-+..++-+.+.+ ..-..++|+
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPL 660 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPL 660 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHH
Confidence 333337888899999999999999988765543 34555666554 35666644434443333444432 224557899
Q ss_pred hhHhhcCCchHHHHHHHHHHHHhcCCChhhH-HhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc
Q 004614 483 IFISRFEDDKYVSDLFEELWEENTSGDRVTL-QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE 552 (742)
Q Consensus 483 l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i-~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~ 552 (742)
+.++..|.+|-|.....+.+..++.. +.+ ++++-+|++.+.-.|-.++-=+|+.+..-|...++.++.
T Consensus 661 l~Q~ltD~EE~Viv~aL~~ls~Lik~--~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 661 LQQGLTDGEEAVIVSALGSLSILIKL--GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHh--cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 99999998887654333333333221 123 578888999998999999877999999999999988774
No 59
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00014 Score=77.80 Aligned_cols=201 Identities=13% Similarity=0.087 Sum_probs=146.3
Q ss_pred chHHHHHHHhhhcCC---hh---HHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhc--hhhhhhhHHHhhhcCCCC
Q 004614 58 STYKELCNLANEMGQ---PD---LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK--PHLRLLIPKLVRFQYDPD 129 (742)
Q Consensus 58 ~tyk~l~~lA~~~~~---p~---lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~--~~l~~lip~L~~~~~Dp~ 129 (742)
..---++++++.++. +. +.-+|.+... +..|+.|-+-.-+|+.+.... .+. +.+..++-.|-.-..||+
T Consensus 195 ~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~t-s~~~~~ritd~Af~ael~~~~--~l~~~~lL~s~~~~la~ka~dp~ 271 (533)
T KOG2032|consen 195 IHRVGLTRLQRFMACVQDLEMGKILAQLLSSIT-SEKENGRITDIAFFAELKRPK--ELDKTGLLGSVLLSLANKATDPS 271 (533)
T ss_pred ccHHHHHHHHHHHHhhCCccHHHHHhhcccccc-hhcccchHHHHHHHHHHhCcc--cccccccHHHHHHHHHHhccCch
Confidence 334456777776554 22 2222222222 334998887776677766544 333 556777777777789999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHc
Q 004614 130 KNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRL-WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM 208 (742)
Q Consensus 130 ~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~-wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l 208 (742)
..+|+.++.+.....+..|+.+..|...++..++.++-|.. -.|.--+..++..+++.....++++|+.++--.+....
T Consensus 272 a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~ 351 (533)
T KOG2032|consen 272 AKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLF 351 (533)
T ss_pred hHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHH
Confidence 99999999999998888778899999999999999986653 46666777778888887777899999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHH
Q 004614 209 DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSIS 268 (742)
Q Consensus 209 ~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr 268 (742)
+|.++.+|.+|..++..|.+++-+-++.. ...++.....|+++. |.+.++-+-
T Consensus 352 ~se~~~~R~aa~~Lfg~L~~l~g~~~e~~-----Fte~v~k~~~~lllh--l~d~~p~va 404 (533)
T KOG2032|consen 352 DSEDDKMRAAAFVLFGALAKLAGGGWEEF-----FTEQVKKRLAPLLLH--LQDPNPYVA 404 (533)
T ss_pred HhcChhhhhhHHHHHHHHHHHcCCCchhh-----hHHHHHhccccceee--eCCCChHHH
Confidence 99999999999999999988775544322 234466677888874 455555443
No 60
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0017 Score=73.66 Aligned_cols=365 Identities=14% Similarity=0.157 Sum_probs=187.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh-hC--CCChhHHHHHHHHHHHHhc-------cCC-ch---hhhh-HH
Q 004614 133 QDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQ-SG--SRLWRSREASCLSLADIIQ-------GRK-FD---QVGK-HL 197 (742)
Q Consensus 133 R~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~-l~--~~~wrvR~aa~~Al~~L~~-------~~~-~~---~l~~-~L 197 (742)
|+++++..+.|..+....+...+...++.++.. .. +.+|+....+..-+..+.- |.. .. .+.. +-
T Consensus 379 RR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~ 458 (960)
T KOG1992|consen 379 RRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA 458 (960)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence 667888888888765444555566656555553 22 3479988888766555542 111 11 1222 23
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHH
Q 004614 198 RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMK 277 (742)
Q Consensus 198 ~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~ 277 (742)
.+|.|.+...-....|.++.++.+-.-+..+. -+++.+-.++|.++. ++..+..-|-.+|..++-+
T Consensus 459 ~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q-------------l~~~~lm~~~p~li~-~L~a~s~vvhsYAA~aiEk 524 (960)
T KOG1992|consen 459 NQILPDLLSPNVNEFPILKADAIKYIYTFRNQ-------------LGKEHLMALLPRLIR-FLEAESRVVHSYAAIAIEK 524 (960)
T ss_pred HHhhHHhccCccccccchhhcccceeeeeccc-------------CChHHHHHHHHHHHH-hccCcchHHHHHHHHHHHh
Confidence 35555554322345666777663333222111 144566677888775 5666677888888888877
Q ss_pred HHHhc--------C-cccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHh
Q 004614 278 LVKGA--------G-IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348 (742)
Q Consensus 278 la~~~--------g-~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~ 348 (742)
+-... | ..+.||.-.++..|...++..+.+. +..+|+++-..+.
T Consensus 525 il~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~E---------------------------neylmKaImRii~ 577 (960)
T KOG1992|consen 525 LLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAE---------------------------NEYLMKAIMRIIS 577 (960)
T ss_pred ccccccCccccccchhhcchHHHHHHHHHHHhccCCcccc---------------------------cHHHHHHHHHHHH
Confidence 65432 2 3477887777777777776543211 1235566666666
Q ss_pred hcChhH---HhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHH
Q 004614 349 VVDTES---LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACA 425 (742)
Q Consensus 349 ~~d~~~---l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~ 425 (742)
..++.. .+.+++.|.+.+......|++- .|..|+=.-+-.++... .+.++..-..+-.++-
T Consensus 578 i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P---------------~fnHYLFEsi~~li~~t-~~~~~~~vs~~e~aL~ 641 (960)
T KOG1992|consen 578 ILQSAIIPHAPELLRQLTEIVEEVSKNPSNP---------------QFNHYLFESIGLLIRKT-CKANPSAVSSLEEALF 641 (960)
T ss_pred hCHHhhhhhhhHHHHHHHHHHHHHhcCCCCc---------------hhHHHHHHHHHHHHHHH-hccCchHHHHHHHHHH
Confidence 555554 4556666666654322222221 12222222222222222 1222222112212211
Q ss_pred HHHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhH-hhcC---CchHHHHHHHHH
Q 004614 426 SVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI-SRFE---DDKYVSDLFEEL 501 (742)
Q Consensus 426 ~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~-~~~d---~~~~v~~~~~~~ 501 (742)
-++...=.+.+.+++++..+.. +.++..=....++.|.+. +|.++. ..-+ .-+.+..+
T Consensus 642 p~fq~Il~eDI~EfiPYvfQll----------a~lve~~~~~ip~~~~~l----~~~lLsp~lW~r~gNipalvrL---- 703 (960)
T KOG1992|consen 642 PVFQTILSEDIQEFIPYVFQLL----------AVLVEHSSGTIPDSYSPL----FPPLLSPNLWKRSGNIPALVRL---- 703 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHhcCCCCchhHHHH----HHHhcCHHHHhhcCCcHHHHHH----
Confidence 1111111222455555555443 122211111234444333 333332 1111 22222222
Q ss_pred HHHhcCCChhhHH--hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHhcCC-CCh
Q 004614 502 WEENTSGDRVTLQ--LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKEVPG-RLW 574 (742)
Q Consensus 502 ~~~~~~~~~~~i~--~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~-~~~~~~~~l~p~L~~~l~~-r~~ 574 (742)
...+..-.+..+. ..++.|+.++.+.+.|.. .-+.+...+..+...+.. .+.||+.+++..|.++++. ++.
T Consensus 704 l~aflk~g~~~~~~~~~l~~iLGifqkLiaSka--~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~ 778 (960)
T KOG1992|consen 704 LQAFLKTGSQIVEAADKLSGILGIFQKLIASKA--NDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTE 778 (960)
T ss_pred HHHHHhcCchhhcccccchhHHHHHHHHhcCcc--cchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcH
Confidence 2222111122232 457778888888877654 346788889988888775 6788999999999999965 444
No 61
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.13 E-value=1.6e-05 Score=71.35 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=88.2
Q ss_pred hHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhh-hhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHH
Q 004614 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID 152 (742)
Q Consensus 74 ~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~-~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~ 152 (742)
+.+..+..+..+.. |..|+.++.+++.++....+.....+. .++|.|..++.|+++.||..+..++..++.+++....
T Consensus 7 ~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 35666666666553 899999999999998764333333343 7899999999999999999999999999987755444
Q ss_pred HHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHhc
Q 004614 153 EHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQ 186 (742)
Q Consensus 153 ~~~~-~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~ 186 (742)
.... .+++.++..+.+.+.++|+.+++++.+|.+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 4444 378889999999899999999999998863
No 62
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.10 E-value=2.2e-05 Score=70.44 Aligned_cols=109 Identities=18% Similarity=0.138 Sum_probs=85.5
Q ss_pred hhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhh
Q 004614 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (742)
Q Consensus 117 lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~-~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~ 195 (742)
++|.|..+++|+++.+|..+..+...+..+.+........ .+++.++..+.++++++|..++++++++.++.+ +....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHHH
Confidence 6777777789999999999999888888775555555555 788889999999999999999999999988754 22222
Q ss_pred HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 004614 196 HL-RRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (742)
Q Consensus 196 ~L-~~i~~~l~~~l~D~~~~VR~aA~~~~~~l 226 (742)
+. ..+++.+.+.+++.+..+|+.+..++.++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 22 24788888889999999999986555544
No 63
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0012 Score=68.12 Aligned_cols=425 Identities=12% Similarity=0.055 Sum_probs=213.6
Q ss_pred CCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHH
Q 004614 126 YDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAF 205 (742)
Q Consensus 126 ~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~ 205 (742)
.|....+|.+...--... .+-+.+.-.+..+-++..+.+.+...+.++|.|+|+|.-.....-+.-.|..+=+-+.
T Consensus 58 SDnlnlqrsaalafAeit----ek~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~ 133 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEIT----EKGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLIL 133 (550)
T ss_pred ccccccchHHHHHHHHHH----HHHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHH
Confidence 455555666554321111 1234444445555567777788889999999999998754432222222223223344
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCC-CChHHHHHHHHHHHHHHHHhcC-
Q 004614 206 RAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAG- 283 (742)
Q Consensus 206 ~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~-~~~~~vr~~a~~~L~~la~~~g- 283 (742)
+.|.|..+ ||.-+..-++.|+.. +..+ .+-.....+.|..- |. +.+..+|.++..+|.+|-..-.
T Consensus 134 qmmtd~ve-vqcnaVgCitnLaT~-----d~nk----~kiA~sGaL~pltr---LakskdirvqrnatgaLlnmThs~En 200 (550)
T KOG4224|consen 134 QMMTDGVE-VQCNAVGCITNLATF-----DSNK----VKIARSGALEPLTR---LAKSKDIRVQRNATGALLNMTHSREN 200 (550)
T ss_pred HhcCCCcE-EEeeehhhhhhhhcc-----ccch----hhhhhccchhhhHh---hcccchhhHHHHHHHHHHHhhhhhhh
Confidence 45666554 555454444444321 2111 01112233344321 22 3567889999999988875421
Q ss_pred -cccccchhhHHHHHHHhccccchHHHHHHHHHh-hhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHH
Q 004614 284 -IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHA-ANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPH 361 (742)
Q Consensus 284 -~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a-~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~ 361 (742)
..+.. ..-+|.|.+++++..+.+. |.+.++ ++.+.+. ..|- .+++ .=+.++|.
T Consensus 201 Rr~LV~--aG~lpvLVsll~s~d~dvq-yycttaisnIaVd~----~~Rk-------------~Laq-----aep~lv~~ 255 (550)
T KOG4224|consen 201 RRVLVH--AGGLPVLVSLLKSGDLDVQ-YYCTTAISNIAVDR----RARK-------------ILAQ-----AEPKLVPA 255 (550)
T ss_pred hhhhhc--cCCchhhhhhhccCChhHH-HHHHHHhhhhhhhH----HHHH-------------HHHh-----cccchHHH
Confidence 11110 1225667777776666554 444332 3222110 0110 0111 12679999
Q ss_pred HHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhcccc-HHHHHHHHHHHHHHHhhCC-HHHH--H
Q 004614 362 LARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKS-AAAKRAFASACASVLKYAT-PSQA--Q 437 (742)
Q Consensus 362 L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~-~~Vr~~~~~al~~L~~~~~-~~~~--~ 437 (742)
|+++++++ ....+..+..++..++........-.-..-++.++..+ +++. +.|.... .++..+.-.-. +..+ .
T Consensus 256 Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Ll-qs~~~plilasV-aCIrnisihplNe~lI~da 332 (550)
T KOG4224|consen 256 LVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELL-QSPMGPLILASV-ACIRNISIHPLNEVLIADA 332 (550)
T ss_pred HHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHH-hCcchhHHHHHH-HHHhhcccccCcccceecc
Confidence 99999875 33455556666665543322111000112244555666 3443 4443332 22222211111 1111 3
Q ss_pred HHHHHHHHhhc--CCchhHHHHHHHHHHHHhhchhhhhh-hhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHH
Q 004614 438 KLIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSG-YHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQ 514 (742)
Q Consensus 438 ~li~~l~~~~~--~d~~~r~~a~~~l~~i~~~~~~~~~~-~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~ 514 (742)
.++..+...+. ++++.+..+...+..++.......+. +-.--+|.+....-|..-++++........+.-+ ..-+
T Consensus 333 gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k 410 (550)
T KOG4224|consen 333 GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDK 410 (550)
T ss_pred cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccH
Confidence 45555666654 45556767777777776533221111 1123345544434444444554443333332221 1123
Q ss_pred hhH--HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcc
Q 004614 515 LYL--GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (742)
Q Consensus 515 ~yl--~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~ 592 (742)
.|+ ..|+++++....|.+-++|-.||.+++.+++... +|.. +++.+.
T Consensus 411 ~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~-----~Yar--------------------------viEawd 459 (550)
T KOG4224|consen 411 EALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE-----HYAR--------------------------VIEAWD 459 (550)
T ss_pred HHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH-----HHHH--------------------------HHHHhc
Confidence 333 2367777788888999999999999998887531 2221 222121
Q ss_pred cccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHc
Q 004614 593 KDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (742)
Q Consensus 593 ~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~ 636 (742)
.| .+.|...+.+-++.....+|..+.|++-.+++.-
T Consensus 460 -------~P-~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 460 -------HP-VQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred -------Cc-chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 11 2455556666666666778888888888887764
No 64
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.055 Score=63.14 Aligned_cols=500 Identities=14% Similarity=0.153 Sum_probs=262.1
Q ss_pred hhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCc-----
Q 004614 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF----- 190 (742)
Q Consensus 116 ~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~----- 190 (742)
.|++.+... ...+|-....|.+.+.... -.++++.+++.+...+.+.+-..--++...+..|.....+
T Consensus 93 nIl~~iv~~----p~~iRvql~~~l~~Ii~~D---~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~ee 165 (1010)
T KOG1991|consen 93 NILETIVQV----PELIRVQLTACLNTIIKAD---YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEE 165 (1010)
T ss_pred HHHHHHHhC----chHHHHHHHHHHHHHHhcC---CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccc
Confidence 466666533 5567777888887766431 3478899999999999988766667777778787763321
Q ss_pred -----hhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcC-----C
Q 004614 191 -----DQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEG-----I 260 (742)
Q Consensus 191 -----~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~g-----l 260 (742)
+.++.+++.|.....+++.+.....-+-....++..-..+.-.+...-..+.....-+...+..+ ++. +
T Consensus 166 R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~-~rpvP~E~l 244 (1010)
T KOG1991|consen 166 RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSIL-NRPVPVEVL 244 (1010)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHH-cCCCChhcc
Confidence 12455566666666666666554433322222222111111000000000011112222222221 221 1
Q ss_pred CC--------ChHHHHHHHHHHHHHHHHhcCcc--------------cccchhhHHHHHHHhccc------cchHHH---
Q 004614 261 LS--------KVDSISKASIGVVMKLVKGAGIA--------------IRPHLSDLVSCMLESLSS------LEDQGL--- 309 (742)
Q Consensus 261 ~~--------~~~~vr~~a~~~L~~la~~~g~~--------------l~p~lp~Lv~~Ll~~ls~------~e~~~~--- 309 (742)
.- .-+-++++|+..+-++.++.|+. +..|.+.+...++..+.. ..|.+.
T Consensus 245 ~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~ 324 (1010)
T KOG1991|consen 245 SLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYL 324 (1010)
T ss_pred cCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 10 12458899999999999987742 123455566666655532 223333
Q ss_pred -HHHHHHhh---h---------------------cCc-chhhhhH-----Hhhh--hc--cCCcH---HHHHHHHHhhcC
Q 004614 310 -NYIELHAA---N---------------------AGI-QTEKLEN-----LRIS--IA--KGSPM---WDTLDLCINVVD 351 (742)
Q Consensus 310 -~~~~~~a~---~---------------------~~~-~~~~~d~-----~r~~--~~--~~s~l---~~al~~~~~~~d 351 (742)
||+.+... . ++. +++.+++ .|.. .. ..||- ++.+-.++.--+
T Consensus 325 l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ 404 (1010)
T KOG1991|consen 325 LNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRG 404 (1010)
T ss_pred HHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcc
Confidence 33322110 0 111 2333331 2322 11 12222 334446777788
Q ss_pred hhHHhhHHHHHHHHHHccCC------C-chHhhHHHHHHHHHHHhcccccccH---H-HHHHHHhhhhhccccHHHHHHH
Q 004614 352 TESLDQLVPHLARLVRSGIG------L-NTRVGVASFISLLVQKIGMDIKPYT---S-MLLRLLFPVVKEEKSAAAKRAF 420 (742)
Q Consensus 352 ~~~l~~lvp~L~~~l~~~~~------~-~~r~~a~~~l~~L~~~~g~~l~p~~---~-~ll~~Ll~~l~~D~~~~Vr~~~ 420 (742)
++.++.+++.+.+++.+..+ . +.+-||.+.++.|+.... .=.||. + -+++.+++.+ +++..-.|.++
T Consensus 405 ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~-K~s~~~~~mE~flv~hVfP~f-~s~~g~Lrara 482 (1010)
T KOG1991|consen 405 KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILL-KKSPYKSQMEYFLVNHVFPEF-QSPYGYLRARA 482 (1010)
T ss_pred hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHc-cCCchHHHHHHHHHHHhhHhh-cCchhHHHHHH
Confidence 99999999999999973222 2 233499999999985442 223443 3 3556677888 66777788888
Q ss_pred HHHHHHHHh-hCCHH-HHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHhhch---hhhhhhhhhhhhHhhHhhcC-Cch
Q 004614 421 ASACASVLK-YATPS-QAQKLIEETAALHIDDK--NSQISCAILLKSYSSVAS---DVLSGYHAVIVPVIFISRFE-DDK 492 (742)
Q Consensus 421 ~~al~~L~~-~~~~~-~~~~li~~l~~~~~~d~--~~r~~a~~~l~~i~~~~~---~~~~~~~~~vlP~l~~~~~d-~~~ 492 (742)
|-.+++... -.+++ .+.+.++-....+..|. -.|..++.++..+..... +.+.++.+.++.-++..+++ +.+
T Consensus 483 c~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End 562 (1010)
T KOG1991|consen 483 CWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND 562 (1010)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh
Confidence 888888873 34443 34555555555554332 368888899999976654 34777777777766665555 455
Q ss_pred HHHHHHHHHHHHhcCCChhhHHhhHHHHHH----HHHhhccC-----CCHHHHHHHH----HHHHHHHHHhCc---chhh
Q 004614 493 YVSDLFEELWEENTSGDRVTLQLYLGEIVS----LICEGIAS-----SSWSSKRKSA----KAICKLGEILGE---SLSN 556 (742)
Q Consensus 493 ~v~~~~~~~~~~~~~~~~~~i~~yl~~il~----~l~~~L~~-----~sw~vR~~Aa----~~lg~La~~~g~---~~~~ 556 (742)
++...+.++.+.+ +..+.||..++++ .+.+.+.. .+-+=|+-+| .++..+..++.. -+..
T Consensus 563 ~Lt~vme~iV~~f----seElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~ 638 (1010)
T KOG1991|consen 563 DLTNVMEKIVCKF----SEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ 638 (1010)
T ss_pred HHHHHHHHHHHHH----HHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 5665555555443 3456666555543 34444442 2233344444 233444444432 2233
Q ss_pred hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH
Q 004614 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIK 634 (742)
Q Consensus 557 ~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~ 634 (742)
..+.++|.+...++....+.=++++ +++.++.-. .++-++.+=.+.+.+....++....|=....-+|..++.
T Consensus 639 le~~~l~vi~~iL~~~i~dfyeE~~----ei~~~~t~~-~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 639 LEPIVLPVIGFILKNDITDFYEELL----EIVSSLTFL-SKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH----HHHhhhhhh-hcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 3556666666666433222223333 333332211 111112222333444444444445555555555554443
No 65
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.97 E-value=0.00058 Score=72.82 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=110.6
Q ss_pred hcCC-CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHhccCCchhhhhHHHHHH
Q 004614 124 FQYD-PDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGS-RLWRSREASCLSLADIIQGRKFDQVGKHLRRIW 201 (742)
Q Consensus 124 ~~~D-p~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~-~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~ 201 (742)
...+ +...-..++..+.+.++.+.-..-++||..||..++.-++| ++.-.|+-|..-|...+...+ ..+.++-...+
T Consensus 295 ~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-~~l~DstE~ai 373 (516)
T KOG2956|consen 295 ISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-ARLFDSTEIAI 373 (516)
T ss_pred ccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-HhhhchHHHHH
Confidence 3444 33333445566888888765456699999999999999998 677778888888888888776 78888888888
Q ss_pred HHHHHHccCCcHHH-HHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004614 202 TAAFRAMDDIKETV-RTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (742)
Q Consensus 202 ~~l~~~l~D~~~~V-R~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~ 280 (742)
.+++.+-.|.+..| |.|+.-+.+.++... ....+..+-|.|+. .+.+.-..++.++.++++
T Consensus 374 ~K~Leaa~ds~~~v~~~Aeed~~~~las~~-------------P~~~I~~i~~~Ilt-----~D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 374 CKVLEAAKDSQDEVMRVAEEDCLTTLASHL-------------PLQCIVNISPLILT-----ADEPRAVAVIKMLTKLFE 435 (516)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHhhC-------------chhHHHHHhhHHhc-----CcchHHHHHHHHHHHHHh
Confidence 88888888876655 555444444444322 23355667777763 233444455678888888
Q ss_pred hcC-cccccchhhHHHHHHHhccc
Q 004614 281 GAG-IAIRPHLSDLVSCMLESLSS 303 (742)
Q Consensus 281 ~~g-~~l~p~lp~Lv~~Ll~~ls~ 303 (742)
... +.+.+.+|+++|.++++..+
T Consensus 436 ~l~~EeL~~ll~diaP~~iqay~S 459 (516)
T KOG2956|consen 436 RLSAEELLNLLPDIAPCVIQAYDS 459 (516)
T ss_pred hcCHHHHHHhhhhhhhHHHHHhcC
Confidence 765 34667777777777766654
No 66
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.031 Score=63.11 Aligned_cols=354 Identities=12% Similarity=0.146 Sum_probs=201.1
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004614 200 IWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLV 279 (742)
Q Consensus 200 i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la 279 (742)
+.....+-|+++.+-||-...+.+..+ +..+.++.++|.+.+ .+...+.=||+.|.-++..|-
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL----------------kE~ELlepl~p~Ira-cleHrhsYVRrNAilaifsIy 162 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL----------------KEPELLEPLMPSIRA-CLEHRHSYVRRNAILAIFSIY 162 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc----------------CcHHHhhhhHHHHHH-HHhCcchhhhhhhheeehhHH
Confidence 333444457788888888763333222 145688999999886 577788999999999999999
Q ss_pred HhcCcccccchhhHHHHHHHhccccchHHHH-HHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhh-
Q 004614 280 KGAGIAIRPHLSDLVSCMLESLSSLEDQGLN-YIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQ- 357 (742)
Q Consensus 280 ~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~-~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~- 357 (742)
+. ++.+-|-.|+|+..++..=.+.. -.+| ++..+-. |..|. .+=+..|+..+. .+..
T Consensus 163 k~-~~~L~pDapeLi~~fL~~e~Dps-CkRNAFi~L~~~---------D~ErA--------l~Yl~~~idqi~--~~~~~ 221 (948)
T KOG1058|consen 163 KN-FEHLIPDAPELIESFLLTEQDPS-CKRNAFLMLFTT---------DPERA--------LNYLLSNIDQIP--SFNDS 221 (948)
T ss_pred hh-hhhhcCChHHHHHHHHHhccCch-hHHHHHHHHHhc---------CHHHH--------HHHHHhhHhhcc--CccHH
Confidence 88 55677888999988885433211 1111 1111100 00010 001112222211 0101
Q ss_pred HHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHH-H
Q 004614 358 LVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ-A 436 (742)
Q Consensus 358 lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~-~ 436 (742)
+--.+.+.+++ .+.+.+. --.++++.++..| +..++.|+=. |.|.++...+++. +
T Consensus 222 LqlViVE~Irk----------------v~~~~p~----~~~~~i~~i~~lL-~stssaV~fE---aa~tlv~lS~~p~al 277 (948)
T KOG1058|consen 222 LQLVIVELIRK----------------VCLANPA----EKARYIRCIYNLL-SSTSSAVIFE---AAGTLVTLSNDPTAL 277 (948)
T ss_pred HHHHHHHHHHH----------------HHhcCHH----HhhHHHHHHHHHH-hcCCchhhhh---hcceEEEccCCHHHH
Confidence 11111122211 1111111 1235667777777 4456666533 3344544444432 3
Q ss_pred HHHHHHHHHhhc--CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHH
Q 004614 437 QKLIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQ 514 (742)
Q Consensus 437 ~~li~~l~~~~~--~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~ 514 (742)
..-....+++.. .|.+.+...-+-+..+.......|+.+.-.+++++ ..++-+||.-..++--+++.+
T Consensus 278 k~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvL----ss~dldvr~Ktldi~ldLvss------ 347 (948)
T KOG1058|consen 278 KAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVL----SSPDLDVRSKTLDIALDLVSS------ 347 (948)
T ss_pred HHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc----CcccccHHHHHHHHHHhhhhh------
Confidence 333333334332 46666666666666776555566777777777764 235556776444443343332
Q ss_pred hhHHHHHHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 004614 515 LYLGEIVSLICEGIA-------SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSI 587 (742)
Q Consensus 515 ~yl~~il~~l~~~L~-------~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l 587 (742)
.-..+++.++.+-+. +.+-+-|+.-.+++...+.++++ +-..+.|.|.+.+.+....--..++..+.+.
T Consensus 348 rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~ 423 (948)
T KOG1058|consen 348 RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREA 423 (948)
T ss_pred ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 123445555554442 33456788888888888876644 4567889999999876665667777777777
Q ss_pred HhhcccccCcCCCCchHHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHcC
Q 004614 588 STSCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFR 637 (742)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~iv~~l~~~~~~-~~~~~R~~a~~~Lg~l~~~~~ 637 (742)
+++.+ ++...|+..++..+.. +..+.-+.|+|-+|.|++...
T Consensus 424 iek~p--------~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 424 IEKFP--------NLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHhCc--------hHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 77654 3455666666655433 456667789999999998775
No 67
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0026 Score=72.09 Aligned_cols=366 Identities=13% Similarity=0.095 Sum_probs=186.3
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004614 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL 238 (742)
Q Consensus 159 l~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~ 238 (742)
+..++....|++|-.|.-|. ..+...+ +......++..+.+.++|..+.||++|+-.+..+...-.+.+..
T Consensus 88 vnt~~kD~~d~np~iR~lAl---rtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~-- 158 (734)
T KOG1061|consen 88 VNTFLKDCEDPNPLIRALAL---RTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED-- 158 (734)
T ss_pred hhhhhccCCCCCHHHHHHHh---hceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc--
Confidence 34456678899999996554 4433322 23334466677788899999999999865554443222222221
Q ss_pred CccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCc-ccccchhhHHHHHHHhccccchHHHHHHHHHhh
Q 004614 239 TEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI-AIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (742)
Q Consensus 239 ~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~-~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~ 317 (742)
..+++.|-+ -+.++++.|-..|+.++.+|.+.-.. ...-..++++..+++.+.....|..-
T Consensus 159 ----------~gl~~~L~~-ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi------- 220 (734)
T KOG1061|consen 159 ----------SGLVDALKD-LLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI------- 220 (734)
T ss_pred ----------cchhHHHHH-HhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH-------
Confidence 113333332 12346778999999999999986543 33344466777777777654333211
Q ss_pred hcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhH--HhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccc
Q 004614 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTES--LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKP 395 (742)
Q Consensus 318 ~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~--l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p 395 (742)
..++.+..|.-.+. ...++.++...+++. ..+.-.++..++-.++..+.
T Consensus 221 -----------------------~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~----- 271 (734)
T KOG1061|consen 221 -----------------------FILDCLAEYVPKDSREAEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLK----- 271 (734)
T ss_pred -----------------------HHHHHHHhcCCCCchhHHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHH-----
Confidence 12333334432211 122233332233221 11111133333322211111
Q ss_pred cHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhh
Q 004614 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGY 475 (742)
Q Consensus 396 ~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~ 475 (742)
+ +.+. ...++.+.+.......++....+-.=+.-+....+..|...
T Consensus 272 ---------------~----~~~~---------------~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~ 317 (734)
T KOG1061|consen 272 ---------------Q----VNEL---------------LFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVE 317 (734)
T ss_pred ---------------H----HHHH---------------HHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhH
Confidence 0 1000 01122222222221111111111111111112223333222
Q ss_pred hhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchh
Q 004614 476 HAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLS 555 (742)
Q Consensus 476 ~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~ 555 (742)
.. . |..++.+--+|+..=.++...++.. .-+++++.-+.++-.+-+.+.-+.+.++||.++.+....
T Consensus 318 ~~----~-Ff~kynDPiYvK~eKleil~~la~~------~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-- 384 (734)
T KOG1061|consen 318 IK----V-FFCKYNDPIYVKLEKLEILIELAND------ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-- 384 (734)
T ss_pred hH----e-eeeecCCchhhHHHHHHHHHHHhhH------hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--
Confidence 21 1 2234444445554444555444332 234556666667777778888888999999999886544
Q ss_pred hhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHH
Q 004614 556 NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIK 634 (742)
Q Consensus 556 ~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~-~~~~~R~~a~~~Lg~l~~ 634 (742)
......|.+.+.-+..-+..+++..+-.+.++++. -...++..+..-... .+++-|.+-+|.+|++++
T Consensus 385 ---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~--------~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~ 453 (734)
T KOG1061|consen 385 ---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN--------KYESVVAILCENLDSLQEPEAKAALIWILGEYAE 453 (734)
T ss_pred ---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC--------chhhhhhhhcccccccCChHHHHHHHHHHhhhhh
Confidence 34555566666544434555666666677766653 235555555543322 478889999999999998
Q ss_pred HcCC
Q 004614 635 AFRD 638 (742)
Q Consensus 635 ~~~~ 638 (742)
.+++
T Consensus 454 ~i~~ 457 (734)
T KOG1061|consen 454 RIEN 457 (734)
T ss_pred ccCc
Confidence 8864
No 68
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.059 Score=59.12 Aligned_cols=257 Identities=13% Similarity=0.156 Sum_probs=146.3
Q ss_pred hhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHH
Q 004614 348 NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASV 427 (742)
Q Consensus 348 ~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L 427 (742)
++++.+.....+..|-.++++ ....+|-.|.+.+..|+...+..+. .+.+=++.|+ +|.|-.+ ..-|+-.|
T Consensus 294 ~nv~~~~~~~~vs~L~~fL~s-~rv~~rFsA~Riln~lam~~P~kv~-vcN~evEsLI----sd~Nr~I---styAITtL 364 (898)
T COG5240 294 ENVGSQFVDQTVSSLRTFLKS-TRVVLRFSAMRILNQLAMKYPQKVS-VCNKEVESLI----SDENRTI---STYAITTL 364 (898)
T ss_pred hccCHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhhCCceee-ecChhHHHHh----hcccccc---hHHHHHHH
Confidence 445665556666666556654 2445667899999999988876653 3444444444 4555444 45678888
Q ss_pred HhhCCHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhc
Q 004614 428 LKYATPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT 506 (742)
Q Consensus 428 ~~~~~~~~~~~li~~l~~~~~~-d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~ 506 (742)
++.-.++.+..++..+..+..+ .++-++.+.+++.+++-..|..-..|++-+...+.. ...-+-+....+...+..
T Consensus 365 LKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~ 441 (898)
T COG5240 365 LKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAM 441 (898)
T ss_pred HHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH
Confidence 9999999998888887766531 345566677888888776665544444433322221 111122333333333322
Q ss_pred CCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhh--hHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 004614 507 SGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN--YHHVLLESIMKEVPGRLWEGKDALLYAI 584 (742)
Q Consensus 507 ~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~--~~~~l~p~L~~~l~~r~~~~ke~vl~aL 584 (742)
...|. .-+.++..++.+++|-.+ -+.+..-||-|.+-.+..-.| |...++.-++ -...-+|.+++.||
T Consensus 442 ~~~p~----skEraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aL 511 (898)
T COG5240 442 ENDPD----SKERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLI----LENNIVRSAAVQAL 511 (898)
T ss_pred hhCch----HHHHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHH
Confidence 22221 112233334444444332 233444555555443322111 3333332221 11123788999999
Q ss_pred HHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 004614 585 GSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQV 632 (742)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l 632 (742)
+.+.-...+ .-..+.+..++.|.+.|++.++|..|..++..+
T Consensus 512 skf~ln~~d------~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 512 SKFALNISD------VVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHhccCccc------cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 888654432 334577778888999999999999998887654
No 69
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.92 E-value=6.7e-06 Score=63.00 Aligned_cols=54 Identities=28% Similarity=0.440 Sum_probs=49.9
Q ss_pred hhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHH
Q 004614 89 LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKS 142 (742)
Q Consensus 89 w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~ 142 (742)
|..|++|+.+||.+++.+++.+++++++++|.|...+.|+++.||.++..+.+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999999999999876653
No 70
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.072 Score=59.84 Aligned_cols=272 Identities=13% Similarity=0.105 Sum_probs=159.5
Q ss_pred CCcHHHHHHHHHhhcChh--HHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhccccc-ccHHHHHHHHhhhhhccc
Q 004614 336 GSPMWDTLDLCINVVDTE--SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK-PYTSMLLRLLFPVVKEEK 412 (742)
Q Consensus 336 ~s~l~~al~~~~~~~d~~--~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~-p~~~~ll~~Ll~~l~~D~ 412 (742)
+..+.+|+.-.+. +|.+ .+..-+..|.+++.+. ..+.|--+.+-+..|+.+ .+. .-+.+-...++..|..++
T Consensus 307 naVLFeaI~l~~h-~D~e~~ll~~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkter 381 (938)
T KOG1077|consen 307 NAVLFEAISLAIH-LDSEPELLSRAVNQLGQFLSHR-ETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTER 381 (938)
T ss_pred HHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHhhcc-cccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhcccc
Confidence 3346677764433 3433 3455556666666432 345555555655555544 121 113334556677775589
Q ss_pred cHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCc
Q 004614 413 SAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDD 491 (742)
Q Consensus 413 ~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~ 491 (742)
+.+||+.+..-+-.+|.... ...++..+.+.+. .|...|.....=+.-++.....++.-|.+.++.++-.+-.-.+
T Consensus 382 DvSirrravDLLY~mcD~~N---ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs 458 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDVSN---AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS 458 (938)
T ss_pred chHHHHHHHHHHHHHhchhh---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence 99999998888777765544 3444444444443 4666666544333344443344577888888888766542122
Q ss_pred hHHHHHHHHHHHHhcCCC--hhhHHhhHHHHHHHHHhhccCC--CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHH
Q 004614 492 KYVSDLFEELWEENTSGD--RVTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMK 567 (742)
Q Consensus 492 ~~v~~~~~~~~~~~~~~~--~~~i~~yl~~il~~l~~~L~~~--sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~ 567 (742)
+ ++|--+++-. ...+..|.- ..+.++|+.+ ...+-+.+++.||....-+.+.-...-...+..|.+
T Consensus 459 d-------eVW~RvvQiVvNnedlq~yaa---k~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~ 528 (938)
T KOG1077|consen 459 D-------EVWYRVVQIVVNNEDLQGYAA---KRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHE 528 (938)
T ss_pred H-------HHHHHhheeEecchhhhHHHH---HHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHH
Confidence 2 4554432210 134556643 2233444433 245667788888887765433111123456778888
Q ss_pred hcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 004614 568 EVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVI 633 (742)
Q Consensus 568 ~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~ 633 (742)
.+..-+...|--+|.++..++.-.+ +....+.+.+....+--+.++++.|+.-|...-
T Consensus 529 K~~~~s~~tr~lLLtTyiKl~nl~P--------Ei~~~v~~vFq~~~n~~D~ElQqRa~EYLql~k 586 (938)
T KOG1077|consen 529 KLHLCSPVTRALLLTTYIKLINLFP--------EIKSNVQKVFQLYSNLIDVELQQRAVEYLQLSK 586 (938)
T ss_pred HhccCChhHHHHHHHHHHHHHhhCh--------hhhHHHHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 8877777889999999999986443 445677777777666678999999988765543
No 71
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.0006 Score=69.62 Aligned_cols=289 Identities=15% Similarity=0.168 Sum_probs=168.3
Q ss_pred chHHHHHHHhhhcCCh-------hHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhh-hhhhHHHhhhcCCCC
Q 004614 58 STYKELCNLANEMGQP-------DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDPD 129 (742)
Q Consensus 58 ~tyk~l~~lA~~~~~p-------~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l-~~lip~L~~~~~Dp~ 129 (742)
++||-=..|+.+-..| ..|++|+++...+..---.--|+-++..|++|...+.+-.+ ...+|.+...+++++
T Consensus 91 av~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~ 170 (526)
T COG5064 91 AVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTE 170 (526)
T ss_pred HHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCch
Confidence 4566656667776666 35788888874332111223578899999998855443222 257888888889999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHH-H-HHHHHHHHhhCCCCh--hHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHH
Q 004614 130 KNVQDAMAHIWKSLVADPKRTIDEHL-D-LIFDDLLIQSGSRLW--RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAF 205 (742)
Q Consensus 130 ~~VR~a~~~iw~~lv~d~~~~i~~~~-~-~il~~Ll~~l~~~~w--rvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~ 205 (742)
..||+-+.-..+-+..|++. .+.|. . -.|+-++..+.+... ..-..+.|.|.+|..|..++.=...+.+.+|.++
T Consensus 171 ~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~ 249 (526)
T COG5064 171 DDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILA 249 (526)
T ss_pred HHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHH
Confidence 99999887777778887643 33332 2 133334433333222 3446778999999999876666677888888888
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHH-HhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCc
Q 004614 206 RAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDI-VLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (742)
Q Consensus 206 ~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~-lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~ 284 (742)
++.--.+++|-.-| |++++-+. | ++.+....+++. +.+-|++ -|.+++..++.-++..+|+|+.....
T Consensus 250 KLiys~D~evlvDA---~WAiSYls----D---g~~E~i~avld~g~~~RLvE-lLs~~sa~iqtPalR~vGNIVTG~D~ 318 (526)
T COG5064 250 KLIYSRDPEVLVDA---CWAISYLS----D---GPNEKIQAVLDVGIPGRLVE-LLSHESAKIQTPALRSVGNIVTGSDD 318 (526)
T ss_pred HHHhhcCHHHHHHH---HHHHHHhc----c---CcHHHHHHHHhcCCcHHHHH-HhcCccccccCHHHHhhcCeeecCcc
Confidence 88776666665555 77765432 1 111222233332 2334443 23445666777788888888764322
Q ss_pred c---cccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHH
Q 004614 285 A---IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPH 361 (742)
Q Consensus 285 ~---l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~ 361 (742)
. +-. -..++.|..+|++.+...+.-.||..++. +. +. .+-+..+++ ..++|.
T Consensus 319 QTqviI~--~G~L~a~~~lLs~~ke~irKEaCWTiSNI--TA-------------Gn-teqiqavid-------~nliPp 373 (526)
T COG5064 319 QTQVIIN--CGALKAFRSLLSSPKENIRKEACWTISNI--TA-------------GN-TEQIQAVID-------ANLIPP 373 (526)
T ss_pred ceehhee--cccHHHHHHHhcChhhhhhhhhheeeccc--cc-------------CC-HHHHHHHHh-------cccchH
Confidence 1 111 02345566667765544444445544331 00 00 001111111 358888
Q ss_pred HHHHHHccCCCchHhhHHHHHHH
Q 004614 362 LARLVRSGIGLNTRVGVASFISL 384 (742)
Q Consensus 362 L~~~l~~~~~~~~r~~a~~~l~~ 384 (742)
|+..+... +..+|.++|=++..
T Consensus 374 Li~lls~a-e~k~kKEACWAisN 395 (526)
T COG5064 374 LIHLLSSA-EYKIKKEACWAISN 395 (526)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHh
Confidence 88888653 55666677766644
No 72
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.81 E-value=0.19 Score=65.38 Aligned_cols=125 Identities=17% Similarity=0.223 Sum_probs=95.7
Q ss_pred cCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC-hhhHHHHHHHH
Q 004614 506 TSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL-WEGKDALLYAI 584 (742)
Q Consensus 506 ~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~-~~~ke~vl~aL 584 (742)
..+.+.-+.+|++.++..+..-+.+++..+-+++..++|.||...|..+..+.+.+++.+.+.+.+.. -..|...+.++
T Consensus 635 i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l 714 (2341)
T KOG0891|consen 635 IISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKAL 714 (2341)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHh
Confidence 34444567899999999999999999999999999999999999998776677788888888887665 34578999999
Q ss_pred HHHHhhcccccCcCCCCchHHHHHHHHHHHhh-hCHHHHHHHHHHHHHH
Q 004614 585 GSISTSCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQV 632 (742)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~-~~~~~R~~a~~~Lg~l 632 (742)
+.+.+..+-.+.+ ..-.|.++..+...++. .....|.+++..+|..
T Consensus 715 ~~l~s~~~~~v~p--~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 715 GQLESSTGYVVDP--YLDYPELLDILINILKTEQSSTIRREAIRLLGLL 761 (2341)
T ss_pred hhhhcccceEecc--cccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence 9999877654443 22245666666555443 3567899999998843
No 73
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.13 Score=59.32 Aligned_cols=340 Identities=12% Similarity=0.022 Sum_probs=193.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHh-ccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHH
Q 004614 264 VDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES-LSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDT 342 (742)
Q Consensus 264 ~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~-ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~a 342 (742)
++..-.+++-++..++...|....+++|.++...-.. +|...|+.. +..++.
T Consensus 480 s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~---------------------------~Tss~~ 532 (982)
T KOG2022|consen 480 SLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLL---------------------------STSSDL 532 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHH---------------------------HHHHHH
Confidence 4666677888999999999988888865555443321 121222211 113456
Q ss_pred HHHHHhhcChh--HHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhc-cccHHHHHH
Q 004614 343 LDLCINVVDTE--SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKE-EKSAAAKRA 419 (742)
Q Consensus 343 l~~~~~~~d~~--~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~-D~~~~Vr~~ 419 (742)
++.+..++.+. .++..+|.|.+.+..+ .....+..-+..||+.+..++.||++.++..+-..+.. .-.+..|..
T Consensus 533 igs~s~~l~e~P~~ln~sl~~L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~k 609 (982)
T KOG2022|consen 533 IGSLSNWLGEHPMYLNPSLPLLFQGLHNS---KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLK 609 (982)
T ss_pred HHHHHHHHhcCCcccCchHHHHHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHH
Confidence 77788877655 3577888888887532 23334555588999999999999999999998887732 112577888
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhhc-----------CCchhHHHHHHHHHHHHhhc--------------hh----
Q 004614 420 FASACASVLKYATPSQAQKLIEETAALHI-----------DDKNSQISCAILLKSYSSVA--------------SD---- 470 (742)
Q Consensus 420 ~~~al~~L~~~~~~~~~~~li~~l~~~~~-----------~d~~~r~~a~~~l~~i~~~~--------------~~---- 470 (742)
...++|+++....++...+++.+++..+. ++++.+...+..+..++.-. +.
T Consensus 610 lm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~ 689 (982)
T KOG2022|consen 610 LMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREE 689 (982)
T ss_pred HHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhcc
Confidence 99999999988886666666555554431 24454444444444443211 00
Q ss_pred -----hhhhhhhhhhhHhhHh--hcCCchHHHHHHHHHH-HHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHH
Q 004614 471 -----VLSGYHAVIVPVIFIS--RFEDDKYVSDLFEELW-EENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKA 542 (742)
Q Consensus 471 -----~~~~~~~~vlP~l~~~--~~d~~~~v~~~~~~~~-~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~ 542 (742)
..-..+.+++|++-.. +.-.+.+|.+....+. ..+.+-.+.-..++++++++++.++...+.. +...
T Consensus 690 ~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a-----~tl~ 764 (982)
T KOG2022|consen 690 PFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLA-----VTLS 764 (982)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHH-----HHHH
Confidence 0112345555554211 1112233333221111 1111111122378899999999997655422 1122
Q ss_pred HHHHHH--HhCc-chhhhHHH----HHHHHHHhcCCC----ChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHH
Q 004614 543 ICKLGE--ILGE-SLSNYHHV----LLESIMKEVPGR----LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVS 611 (742)
Q Consensus 543 lg~La~--~~g~-~~~~~~~~----l~p~L~~~l~~r----~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~ 611 (742)
++..+- ..+. .-.+..++ .+..-+..+.+. ..+.-+..+..+..+.++.++...+....+..-|.+...
T Consensus 765 l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~ 844 (982)
T KOG2022|consen 765 LIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAF 844 (982)
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHH
Confidence 222221 1121 11222222 222222222222 234455566666666666665544434456677777888
Q ss_pred HHHhhhCHHHHHHHHHHHHHHHHHcCC
Q 004614 612 SACRKKIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 612 ~~~~~~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
+.++...+..-++|..-+..++..-.+
T Consensus 845 ~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 845 ILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred HhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 888887777777888877777776654
No 74
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.0083 Score=62.11 Aligned_cols=412 Identities=14% Similarity=0.082 Sum_probs=200.7
Q ss_pred hhhhhhHHhhHHHHHHHh-----hhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCH-H-HHHH--HHHHHH
Q 004614 89 LNSKRGAAFGFSKIAKQA-----GDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPK-R-TIDE--HLDLIF 159 (742)
Q Consensus 89 w~~r~~A~~~l~~i~~~~-----~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~-~-~i~~--~~~~il 159 (742)
.+-.+.|+.+|.-|.++- ++..+| + +...+.+.+.++.+++...+-+.-+.. + .+-+ -++.
T Consensus 61 lnlqrsaalafAeitek~vr~Vsres~ep----v----l~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~-- 130 (550)
T KOG4224|consen 61 LNLQRSAALAFAEITEKGVRRVSRESNEP----V----LALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDL-- 130 (550)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhhhhH----H----HHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHH--
Confidence 455567888888876653 233333 2 223589999999999888876654321 1 1111 1222
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccC
Q 004614 160 DDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLT 239 (742)
Q Consensus 160 ~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~ 239 (742)
.+++.++| .-.+|..+...+.+|..-.+...--.+...+ ..+.++-+-.+..||.-+..++-++...- + .
T Consensus 131 -Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sGaL-~pltrLakskdirvqrnatgaLlnmThs~----E-n-- 200 (550)
T KOG4224|consen 131 -LILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSGAL-EPLTRLAKSKDIRVQRNATGALLNMTHSR----E-N-- 200 (550)
T ss_pred -HHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhccch-hhhHhhcccchhhHHHHHHHHHHHhhhhh----h-h--
Confidence 23344554 4455655544455554321111101111111 22233344444567776654444332110 0 0
Q ss_pred ccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHh--cCcccccchhhHHHHHHHhccccchHHHHHHHHHhh
Q 004614 240 EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG--AGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (742)
Q Consensus 240 ~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~--~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~ 317 (742)
.-.-....-+|+|.+ -+.+.+.++|.+++++++.|+-. ..+-+..-=|.++|.|.+++.+..+.++ +....
T Consensus 201 ---Rr~LV~aG~lpvLVs-ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvk-cqA~l-- 273 (550)
T KOG4224|consen 201 ---RRVLVHAGGLPVLVS-LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVK-CQAGL-- 273 (550)
T ss_pred ---hhhhhccCCchhhhh-hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHH-HHHHH--
Confidence 000122335788875 24557889999999999999853 3344556668899999999987666543 21111
Q ss_pred hcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccH
Q 004614 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT 397 (742)
Q Consensus 318 ~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~ 397 (742)
++|.-+..+.+..+.. -..-+|.+.++++++.+ |.-.+....|-.+...-+.+. +..
T Consensus 274 ----------ALrnlasdt~Yq~eiv-----------~ag~lP~lv~Llqs~~~-plilasVaCIrnisihplNe~-lI~ 330 (550)
T KOG4224|consen 274 ----------ALRNLASDTEYQREIV-----------EAGSLPLLVELLQSPMG-PLILASVACIRNISIHPLNEV-LIA 330 (550)
T ss_pred ----------HHhhhcccchhhhHHH-----------hcCCchHHHHHHhCcch-hHHHHHHHHHhhcccccCccc-cee
Confidence 1111111111111111 12346778888876533 221121222211222222222 222
Q ss_pred H-HHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHH--HH--HHHHHHHHHhhcC---CchhHHHHHHHHHHHHhhch
Q 004614 398 S-MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--QA--QKLIEETAALHID---DKNSQISCAILLKSYSSVAS 469 (742)
Q Consensus 398 ~-~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~--~~--~~li~~l~~~~~~---d~~~r~~a~~~l~~i~~~~~ 469 (742)
+ .+++.|+..|..-.|++++-.+...+..|....... .+ ..-+++++++..+ .-..++++|....++.....
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k 410 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK 410 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH
Confidence 2 466777777744456777766667776665422211 01 1235555555532 22345666666666644333
Q ss_pred hhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChh------hHHhhHHHHHHHHHhhccCCCHHHHHHHHHHH
Q 004614 470 DVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV------TLQLYLGEIVSLICEGIASSSWSSKRKSAKAI 543 (742)
Q Consensus 470 ~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~------~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~l 543 (742)
..|.+ .-++|.+.-...+..++|+.-..+.+..+...... ....-.+.|-..+.+.+.+....+|+.+.-+|
T Consensus 411 ~~lld--~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI 488 (550)
T KOG4224|consen 411 EALLD--SGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTI 488 (550)
T ss_pred HHHhh--cCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33321 22344443333444555543222222111111000 00000123344555666777788888888888
Q ss_pred HHHHHHhCc
Q 004614 544 CKLGEILGE 552 (742)
Q Consensus 544 g~La~~~g~ 552 (742)
-.|.+.-..
T Consensus 489 ~qLle~h~~ 497 (550)
T KOG4224|consen 489 QQLLEDHDL 497 (550)
T ss_pred HHHHHhCCc
Confidence 888876433
No 75
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.69 E-value=0.00025 Score=81.03 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=111.0
Q ss_pred hHHhhHHHHHHHh-hhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCC--
Q 004614 94 GAAFGFSKIAKQA-GDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRL-- 170 (742)
Q Consensus 94 ~A~~~l~~i~~~~-~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~-- 170 (742)
--..||+.+.... ...+-|.++.++|-|+.+..=|++.||-+...+++.+.......+.+|++.+++.++.--.|.+
T Consensus 886 ~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~ 965 (1030)
T KOG1967|consen 886 NYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNN 965 (1030)
T ss_pred HHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcc
Confidence 3346777766654 3567788999999999999999999999999999988876667789999999999998776665
Q ss_pred -hhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHH
Q 004614 171 -WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDK 221 (742)
Q Consensus 171 -wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~ 221 (742)
--||+.|...++.|.+..+...+.+|-++++..+...|||.|.-||+.|..
T Consensus 966 ~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 966 MMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 579999999999999988888999999999999999999999999999854
No 76
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.21 Score=57.09 Aligned_cols=200 Identities=15% Similarity=0.154 Sum_probs=124.5
Q ss_pred hHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhch-hhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCC-----
Q 004614 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKP-HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP----- 147 (742)
Q Consensus 74 ~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~-~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~----- 147 (742)
+-|.++.+-+.++.....||.|+-|+-+.+.+-++.+.. -+..+|-.|-|=+.||. .|..+...+...+..+.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E-~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPE-IIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHH-HHHHHHHHHHHHHhcCcchhhc
Confidence 457888888888888899999999999988876554432 24445666655555543 34444444554444431
Q ss_pred ---H--HHHHHHHH-------HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhh---HHHHHHHHHHHHccCCc
Q 004614 148 ---K--RTIDEHLD-------LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK---HLRRIWTAAFRAMDDIK 212 (742)
Q Consensus 148 ---~--~~i~~~~~-------~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~---~L~~i~~~l~~~l~D~~ 212 (742)
+ +....++. ..+..++..+...+.+||..+..-|..++..++.+ +.. -.|.-+..+..+++|.+
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e-~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE-LQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH-HHHHHHHCchhHHHHHHHHhhhh
Confidence 1 11111222 35566777777789999999999999999988844 332 34566677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 004614 213 ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG 281 (742)
Q Consensus 213 ~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~ 281 (742)
+-+|.+|.-++..+.+-+...- .-.....+...++.++-+.|=. +.--|-.-|+..|.+|.+.
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQ-----KlVAFENaFerLfsIIeeEGg~-dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQ-----KLVAFENAFERLFSIIEEEGGL-DGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred hhhchhHHHHHHHHHccCchHH-----HHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHhh
Confidence 9999999877776643221000 0001233455556655444411 2334555577777777775
No 77
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.63 E-value=0.00027 Score=59.77 Aligned_cols=85 Identities=24% Similarity=0.181 Sum_probs=61.3
Q ss_pred hHHHhhhc-CCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhH
Q 004614 118 IPKLVRFQ-YDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (742)
Q Consensus 118 ip~L~~~~-~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~ 196 (742)
||.|+..+ .|+++.||..+..+.+.+- -+..++.|...+.|++|.||..++.+++.+= .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~------ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----D------ 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----H------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----C------
Confidence 57778777 9999999999888776332 1244666777778999999999999999871 1
Q ss_pred HHHHHHHHHHHcc-CCcHHHHHHHHHHH
Q 004614 197 LRRIWTAAFRAMD-DIKETVRTAGDKLC 223 (742)
Q Consensus 197 L~~i~~~l~~~l~-D~~~~VR~aA~~~~ 223 (742)
++.++.+.+.++ |....||.+|..++
T Consensus 61 -~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 -PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 245555566565 46677899885543
No 78
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.18 Score=57.05 Aligned_cols=324 Identities=13% Similarity=0.120 Sum_probs=162.0
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhcc
Q 004614 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (742)
Q Consensus 157 ~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~ 236 (742)
.+-++++..|++.-+-+|+-|...+-.+....+ +.++|. ||.+..-|+|+++.|..||...+..|++-.
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~----FprL~EkLeDpDp~V~SAAV~VICELArKn------ 212 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPC----FPRLVEKLEDPDPSVVSAAVSVICELARKN------ 212 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhh----HHHHHHhccCCCchHHHHHHHHHHHHHhhC------
Confidence 455667888888888999988887766655444 555554 555566689999999999977666664321
Q ss_pred ccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhh----HHHHHHHhccccchHHHHHH
Q 004614 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSD----LVSCMLESLSSLEDQGLNYI 312 (742)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~----Lv~~Ll~~ls~~e~~~~~~~ 312 (742)
.+.++. +-|.+..-=..+++. ++|.+|.+-+|. +.|+=|. |+|.+.+++.+-..-
T Consensus 213 -------PknyL~-LAP~ffkllttSsNN-------WmLIKiiKLF~a-LtplEPRLgKKLieplt~li~sT~Am----- 271 (877)
T KOG1059|consen 213 -------PQNYLQ-LAPLFYKLLVTSSNN-------WVLIKLLKLFAA-LTPLEPRLGKKLIEPITELMESTVAM----- 271 (877)
T ss_pred -------Cccccc-ccHHHHHHHhccCCC-------eehHHHHHHHhh-ccccCchhhhhhhhHHHHHHHhhHHH-----
Confidence 122333 345544310112221 456777777764 4444444 455555555421111
Q ss_pred HHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhh-----c-Chh-HHhhHHHHHHHHHHccCCCchHhhHHHHHHHH
Q 004614 313 ELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV-----V-DTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLL 385 (742)
Q Consensus 313 ~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~-----~-d~~-~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L 385 (742)
|-+.|++..++.. . |.+ ...--+.+|-.++.++ +.+-|--.+-++..+
T Consensus 272 ------------------------SLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fieds-DqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 272 ------------------------SLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDS-DQNLKYLGLLAMSKI 326 (877)
T ss_pred ------------------------HHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcC-CccHHHHHHHHHHHH
Confidence 1112222222111 0 110 0111122222223221 334444344445555
Q ss_pred HHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHH
Q 004614 386 VQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI--DDKNSQISCAILLKS 463 (742)
Q Consensus 386 ~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~--~d~~~r~~a~~~l~~ 463 (742)
...++..+..+-+ .++++| +|.++.||-++. .-+....+.+.+..++..+..... +....|-....-+-+
T Consensus 327 ~ktHp~~Vqa~kd----lIlrcL-~DkD~SIRlrAL---dLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~ 398 (877)
T KOG1059|consen 327 LKTHPKAVQAHKD----LILRCL-DDKDESIRLRAL---DLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIIS 398 (877)
T ss_pred hhhCHHHHHHhHH----HHHHHh-ccCCchhHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 5555555544444 445556 789999986654 444444566666666666665542 233455443333334
Q ss_pred HHhhc----hhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHh-h-----cc--CC
Q 004614 464 YSSVA----SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICE-G-----IA--SS 531 (742)
Q Consensus 464 i~~~~----~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~-~-----L~--~~ 531 (742)
+|... --.|.-|+..++-+.-..- ........+...+++-.. ..+|++.=..+..++. - .+ +.
T Consensus 399 iCS~snY~~ItdFEWYlsVlveLa~l~~----~~~G~~I~eQi~Dv~iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~ 473 (877)
T KOG1059|consen 399 ICSQSNYQYITDFEWYLSVLVELARLEG----TRHGSLIAEQIIDVAIRV-PSIRPFSVSQMSALLDDPLLAGSAQINSQ 473 (877)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHHhccc----cchhhHHHHHHHHHheec-hhhhHhHHHHHHHHHhchhhccchhhccc
Confidence 43322 1247777776665432211 111122222222322222 2456664333333322 1 11 12
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 004614 532 SWSSKRKSAKAICKLGEIL 550 (742)
Q Consensus 532 sw~vR~~Aa~~lg~La~~~ 550 (742)
-.+|-.+||-++|..++..
T Consensus 474 l~eVL~AaaWi~GEyse~v 492 (877)
T KOG1059|consen 474 LCEVLYAAAWILGEYSEFV 492 (877)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3567788888888888754
No 79
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.014 Score=62.45 Aligned_cols=278 Identities=13% Similarity=0.070 Sum_probs=159.8
Q ss_pred CchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHh-----hCCHHHHHHH-HH--HH
Q 004614 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLK-----YATPSQAQKL-IE--ET 443 (742)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~-----~~~~~~~~~l-i~--~l 443 (742)
.+.|.+|.+++..+++.+| ..+-|.-.+.+.+-..+ .|..+++....+..+..+.. ..++..-..+ .. .+
T Consensus 269 s~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~-~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCM-GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccC-CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 3678899999999988886 34456777888888777 67888888777666544432 2222110000 00 01
Q ss_pred HH--------hhc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchH-HHHHHHHHHHH-hcCCChhh
Q 004614 444 AA--------LHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY-VSDLFEELWEE-NTSGDRVT 512 (742)
Q Consensus 444 ~~--------~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~-v~~~~~~~~~~-~~~~~~~~ 512 (742)
+. .|. .-+....+.|+.+..|....-..|.+-.....|..+.++.|..+. ++........- ....+.+.
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~ 426 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ 426 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence 11 111 112334556666666655554555555556777766666643332 33222111111 11223456
Q ss_pred HHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhh---hHHHHHHHH----HHh----cCCCChhhHHHHH
Q 004614 513 LQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN---YHHVLLESI----MKE----VPGRLWEGKDALL 581 (742)
Q Consensus 513 i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~---~~~~l~p~L----~~~----l~~r~~~~ke~vl 581 (742)
...++..-.+.+...+.|.+...|..++-++|.+...+-..+.. +-..+...+ ++. -.++ ..+|...+
T Consensus 427 d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~-dkV~~nav 505 (728)
T KOG4535|consen 427 DVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADK-DKVKSNAV 505 (728)
T ss_pred hHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHH
Confidence 67788888888999999999999999999999988776443221 222222222 221 1121 34788888
Q ss_pred HHHHHHHhhcccccCcCC-CCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcC----CCchHHhHHHHHHhh
Q 004614 582 YAIGSISTSCHKDISAED-PTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR----DPKFFNIIFPLLFEM 652 (742)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~-~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~----~~~~~~~v~~il~~~ 652 (742)
++|+.+.+-...-....+ .-....+.+.+.++....+.+||=+|+.++|.+.+.-. +.+...++.++|-.+
T Consensus 506 raLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~L 581 (728)
T KOG4535|consen 506 RALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSL 581 (728)
T ss_pred HHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHH
Confidence 888887653321111100 01123445555566666688999999999999987532 234555666666544
No 80
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.56 E-value=0.0013 Score=77.11 Aligned_cols=184 Identities=17% Similarity=0.162 Sum_probs=138.7
Q ss_pred ccchhhhhhHHhhHHHHHHHhh-hhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 004614 86 QVSLNSKRGAAFGFSKIAKQAG-DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLI 164 (742)
Q Consensus 86 ~~~w~~r~~A~~~l~~i~~~~~-~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~ 164 (742)
+..|..|.-|+-++..+++... +.-..+...+..-+=.-.+|.|-+|-.-+..|+..+..-.+.....|...+++.++.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLD 343 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHH
Confidence 4469999999999999998775 444444444444443457899999999999999999876666678888899999999
Q ss_pred hhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchh
Q 004614 165 QSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDA 244 (742)
Q Consensus 165 ~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~ 244 (742)
.+.++-..+|++...++..++.... +..+.+.+...+.+..+.+|.....++... .+..++. ...
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~----~~~~~~~----~~~ 408 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRK----LRKLGPK----TVE 408 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHH----HhhcCCc----Ccc
Confidence 9999999999999888888777443 445555566668999999999854444433 3443321 113
Q ss_pred HhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcc
Q 004614 245 RQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA 285 (742)
Q Consensus 245 ~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~ 285 (742)
...+..+.|.+.. ...+.+++||..+.++++.+.+..|+.
T Consensus 409 ~~t~~~l~p~~~~-~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 409 KETVKTLVPHLIK-HINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred hhhHHHHhHHHhh-hccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 4577888998885 355678999999999999999999864
No 81
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0064 Score=67.49 Aligned_cols=311 Identities=13% Similarity=0.140 Sum_probs=161.2
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCc
Q 004614 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (742)
Q Consensus 161 ~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~ 240 (742)
.+....++.++|||.+|..|+-.|-+|.. +.. .+.....+.|.|..+.||+||.++....++.+.--.+... .
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~---~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~-~ 274 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSK---ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES-E 274 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhccccc---ccH---HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh-h
Confidence 36667788899999999999888877543 222 4566677789999999999999999888776531111110 0
Q ss_pred cchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHH--hccccchHHHHHHHHHhhh
Q 004614 241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLE--SLSSLEDQGLNYIELHAAN 318 (742)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~--~ls~~e~~~~~~~~~~a~~ 318 (742)
-....+....-+= .++.+-+..||-.|...||.+-.... +++...+. ++++..-+ .....+..+
T Consensus 275 ---e~kl~D~aF~~vC-~~v~D~sl~VRV~AaK~lG~~~~vSe--------e~i~QTLdKKlms~lRRk--r~ahkrpk~ 340 (823)
T KOG2259|consen 275 ---EEKLKDAAFSSVC-RAVRDRSLSVRVEAAKALGEFEQVSE--------EIIQQTLDKKLMSRLRRK--RTAHKRPKA 340 (823)
T ss_pred ---hhhhHHHHHHHHH-HHHhcCceeeeehHHHHhchHHHhHH--------HHHHHHHHHHHhhhhhhh--hhcccchHH
Confidence 1112222222111 13444567777777777766543322 22222221 12211000 000000000
Q ss_pred cCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHH
Q 004614 319 AGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS 398 (742)
Q Consensus 319 ~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~ 398 (742)
. ....+|..-+.... ..|- + ..|++ -..++| .|||.++
T Consensus 341 l-~s~GewSsGk~~~a-dvps-e-------e~d~~-~~siI~---------------sGACGA~---------------- 378 (823)
T KOG2259|consen 341 L-YSSGEWSSGKEWNA-DVPS-E-------EDDEE-EESIIP---------------SGACGAL---------------- 378 (823)
T ss_pred H-HhcCCcccCccccc-cCch-h-------hcccc-cccccc---------------cccccee----------------
Confidence 0 00011110000000 0000 0 00000 000111 1233332
Q ss_pred HHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhh
Q 004614 399 MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHA 477 (742)
Q Consensus 399 ~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~ 477 (742)
+.++ .|.-.+||+++..+++.|.-..+ .-..+-+.++.+++. +.+..|.-+...+..|+... ....
T Consensus 379 ------VhGl-EDEf~EVR~AAV~Sl~~La~ssP-~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-----~i~e 445 (823)
T KOG2259|consen 379 ------VHGL-EDEFYEVRRAAVASLCSLATSSP-GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL-----AIRE 445 (823)
T ss_pred ------eeec-hHHHHHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----eecH
Confidence 3345 57778999999999998875444 333445666777775 45678888888888887652 3445
Q ss_pred hhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc
Q 004614 478 VIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE 552 (742)
Q Consensus 478 ~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~ 552 (742)
..++.++....|...++|+...+++...--..-..+..-+..++.-+-.+=+| |...-.|++.+.++-+.
T Consensus 446 eql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 446 EQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccChh
Confidence 56777777788888999988877775421111112222233333333333234 34455678887776544
No 82
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.54 E-value=0.077 Score=59.45 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=87.7
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhC--cchh----hhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccc
Q 004614 522 SLICEGIASSSWSSKRKSAKAICKLGEILG--ESLS----NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI 595 (742)
Q Consensus 522 ~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g--~~~~----~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~ 595 (742)
+.+.+.|++.+..+|.+.....+.++...- +.+. +.+..++..|.+++.+..+-.|..+++.+..++.--..+.
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 445567789999999998888888886542 1233 3466788888999988888899999999999987443332
Q ss_pred CcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcC
Q 004614 596 SAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (742)
Q Consensus 596 ~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~ 637 (742)
.-...+...+.+.+.|++.-||+.|++.++.+...-|
T Consensus 382 -----~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 382 -----GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred -----chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3367889999999999999999999999999987665
No 83
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.50 E-value=0.014 Score=68.61 Aligned_cols=197 Identities=13% Similarity=0.115 Sum_probs=144.4
Q ss_pred hHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCC
Q 004614 353 ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (742)
Q Consensus 353 ~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~ 432 (742)
++++.+.|.+...+-+. .|..|.++..-+...+...+....+-...++-.++.....|.|..|..
T Consensus 249 di~~ki~~~l~t~~~s~-~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~-------------- 313 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSK-KWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVM-------------- 313 (815)
T ss_pred hhhhhcChHHHHhhhcc-chHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHH--------------
Confidence 34567777777766554 788888888877766655553333333344444444443455543322
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhh
Q 004614 433 PSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVT 512 (742)
Q Consensus 433 ~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~ 512 (742)
.++.++..|++.++..|.+|...+.|.+|....+....+++...++...+..++
T Consensus 314 -----------------------~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--- 367 (815)
T KOG1820|consen 314 -----------------------LAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST--- 367 (815)
T ss_pred -----------------------HHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc---
Confidence 234666777777787889999999999998777777777777666666654433
Q ss_pred HHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc--chhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhh
Q 004614 513 LQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE--SLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (742)
Q Consensus 513 i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~--~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~ 590 (742)
.+..+.+.+...+.+.+..+|..+...++......+. ....-+..+.|.+++..+++..++|.+.+++++.+.+.
T Consensus 368 ---~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 368 ---PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred ---cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 3456777788889999999999999999999999884 23335889999999999999999999999999999987
Q ss_pred ccc
Q 004614 591 CHK 593 (742)
Q Consensus 591 ~~~ 593 (742)
.++
T Consensus 445 ~Ge 447 (815)
T KOG1820|consen 445 HGE 447 (815)
T ss_pred hhH
Confidence 764
No 84
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.47 E-value=0.0055 Score=65.65 Aligned_cols=210 Identities=14% Similarity=0.193 Sum_probs=131.6
Q ss_pred hHHHHHHHHhccccchhhhhhHHhhHHH-HHHHhhhhhchhhhhhhHHHhhhcCC-CCHHHHHHHHHHHHHhccCCHHHH
Q 004614 74 DLIYKFMDLANYQVSLNSKRGAAFGFSK-IAKQAGDALKPHLRLLIPKLVRFQYD-PDKNVQDAMAHIWKSLVADPKRTI 151 (742)
Q Consensus 74 ~lv~~fm~l~~~~~~w~~r~~A~~~l~~-i~~~~~~~l~~~l~~lip~L~~~~~D-p~~~VR~a~~~iw~~lv~d~~~~i 151 (742)
++|-..+.-.+.+..-..+++|..-+-. ++++.-...+.|..+|+--+|....| -+...|.-+..+..-+..+.++.+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 4454444433444335678888876666 56665556778889999999999999 677788778888888887766656
Q ss_pred HHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 004614 152 DEHLDLIFDDLLIQSGSRLW-RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLT 230 (742)
Q Consensus 152 ~~~~~~il~~Ll~~l~~~~w-rvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~ 230 (742)
..+-.-.+..++....|... .+|.++--++.-+.+..+...+ .-|.+.++. .|.. |..+ +++-+.+++
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I----~~i~~~Ilt--~D~~---~~~~--~iKm~Tkl~ 434 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI----VNISPLILT--ADEP---RAVA--VIKMLTKLF 434 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH----HHHhhHHhc--Ccch---HHHH--HHHHHHHHH
Confidence 55655555556666555554 4455544444444444443223 233333332 2222 1111 233444443
Q ss_pred HhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcC-cccccchhhHHHHHHHhc
Q 004614 231 IRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG-IAIRPHLSDLVSCMLESL 301 (742)
Q Consensus 231 ~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g-~~l~p~lp~Lv~~Ll~~l 301 (742)
-|+-. +....+++.++|.+++ +-.+.+..||+.+.-||..|+...| +.+.||+.+|-..-+.++
T Consensus 435 e~l~~------EeL~~ll~diaP~~iq-ay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 435 ERLSA------EELLNLLPDIAPCVIQ-AYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred hhcCH------HHHHHhhhhhhhHHHH-HhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 33321 1134477788998886 6677888999999999999999999 889999877654444443
No 85
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.35 Score=55.02 Aligned_cols=407 Identities=13% Similarity=0.120 Sum_probs=206.4
Q ss_pred cchhhhhhHHhhHHHHHHHhh------hhhchhhhhh-----hHHHhh-------hcCCCCHHHHHHHHHHHHHh-ccCC
Q 004614 87 VSLNSKRGAAFGFSKIAKQAG------DALKPHLRLL-----IPKLVR-------FQYDPDKNVQDAMAHIWKSL-VADP 147 (742)
Q Consensus 87 ~~w~~r~~A~~~l~~i~~~~~------~~l~~~l~~l-----ip~L~~-------~~~Dp~~~VR~a~~~iw~~l-v~d~ 147 (742)
+.|-+- -..+.++..++.|. ..++||+.-+ +|.|-. +=.||..-+|+-+. +|+-- .+|-
T Consensus 311 qLWlsd-~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~d-f~d~g~spdl 388 (970)
T COG5656 311 QLWLSD-IELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYD-FFDNGLSPDL 388 (970)
T ss_pred Ceecch-HHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcc-hhcCCCChhH
Confidence 445543 35666777777763 3578888744 444321 33488888988752 33321 1110
Q ss_pred ----------HHHHHHHHHHHHHHHHHhhC-------C-CChhHHHHHHHHHHHHhc--cCCchhhhhHHHH-HHHHHHH
Q 004614 148 ----------KRTIDEHLDLIFDDLLIQSG-------S-RLWRSREASCLSLADIIQ--GRKFDQVGKHLRR-IWTAAFR 206 (742)
Q Consensus 148 ----------~~~i~~~~~~il~~Ll~~l~-------~-~~wrvR~aa~~Al~~L~~--~~~~~~l~~~L~~-i~~~l~~ 206 (742)
.+.-++-|..|++.+.+-++ + ++.|-.++|..-++.+.. ... ..+++-+.. |++.+..
T Consensus 389 aal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~-sp~an~me~fiv~hv~P 467 (970)
T COG5656 389 AALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKM-SPAANVMEYFIVNHVIP 467 (970)
T ss_pred HHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccC-chHHHHHHHHHHHHhhH
Confidence 01113337777777776662 1 346777888877777665 111 223333332 3444444
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHh--cCc
Q 004614 207 AMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG--AGI 284 (742)
Q Consensus 207 ~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~--~g~ 284 (742)
...+.-.-.|..|+..+..+ -...-+ +....++.+.++..+. +.+-+|+-.|..++.-+... ..+
T Consensus 468 ~f~s~ygfL~Srace~is~~---eeDfkd-----~~ill~aye~t~ncl~-----nn~lpv~ieAalAlq~fi~~~q~h~ 534 (970)
T COG5656 468 AFRSNYGFLKSRACEFISTI---EEDFKD-----NGILLEAYENTHNCLK-----NNHLPVMIEAALALQFFIFNEQSHE 534 (970)
T ss_pred hhcCcccchHHHHHHHHHHH---HHhccc-----chHHHHHHHHHHHHHh-----cCCcchhhhHHHHHHHHHhchhhhH
Confidence 55666666677664444433 111111 1112334444444443 34456666666666665553 345
Q ss_pred ccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHH
Q 004614 285 AIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLAR 364 (742)
Q Consensus 285 ~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~ 364 (742)
.++.|.|.+|+.|+.+-...+- | |+...+++++++
T Consensus 535 k~sahVp~tmekLLsLSn~fei--------------------D----------~LS~vMe~fVe~--------------- 569 (970)
T COG5656 535 KFSAHVPETMEKLLSLSNTFEI--------------------D----------PLSMVMESFVEY--------------- 569 (970)
T ss_pred HHHhhhhHHHHHHHHhcccccc--------------------h----------HHHHHHHHHHHH---------------
Confidence 6888999999988854433221 1 122233334433
Q ss_pred HHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhh--------h--ccccHHHHHHHHHHHHHHHhhCCHH
Q 004614 365 LVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVV--------K--EEKSAAAKRAFASACASVLKYATPS 434 (742)
Q Consensus 365 ~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l--------~--~D~~~~Vr~~~~~al~~L~~~~~~~ 434 (742)
|..++.||...+...+.+.+ . .|....|-..-..|.|-|-
T Consensus 570 ------------------------fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~------ 619 (970)
T COG5656 570 ------------------------FSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR------ 619 (970)
T ss_pred ------------------------hHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH------
Confidence 33333333333333322211 1 1112222222222333220
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHh-hHhhcCCchHHHHHHHHHHHHhcCCChhhH
Q 004614 435 QAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVI-FISRFEDDKYVSDLFEELWEENTSGDRVTL 513 (742)
Q Consensus 435 ~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l-~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i 513 (742)
+....+.++ ...++.++.....+.|++ |+..++-.+-.++.+ ++.+..+-. ...+
T Consensus 620 ---------------------T~~smiLSl-en~p~vLk~le~slypvi~Filkn~i~dfy~Ea~-dildg~tf~-skeI 675 (970)
T COG5656 620 ---------------------TIESMILSL-ENRPLVLKYLEVSLYPVISFILKNEISDFYQEAL-DILDGYTFM-SKEI 675 (970)
T ss_pred ---------------------HHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhhhhHH-HHHh
Confidence 111222233 223566666667777776 444443322233332 444332221 2456
Q ss_pred HhhHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHHhCcchhh---hHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHH
Q 004614 514 QLYLGEIVSLICEGIASSSW-SSKRKSAKAICKLGEILGESLSN---YHHVLLESIMKEVPGRL--WEGKDALLYAIGSI 587 (742)
Q Consensus 514 ~~yl~~il~~l~~~L~~~sw-~vR~~Aa~~lg~La~~~g~~~~~---~~~~l~p~L~~~l~~r~--~~~ke~vl~aL~~l 587 (742)
.+....|.+++..++.+..- .--..++.++..++...+..+.. |...+..++...+.... -+.++.+++-+-.+
T Consensus 676 ~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l 755 (970)
T COG5656 676 EPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESL 755 (970)
T ss_pred hhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHH
Confidence 67788899999999887763 55666778888888776665543 34445555666664332 35677777777666
Q ss_pred HhhcccccCcCCCCchHHHHHHHH
Q 004614 588 STSCHKDISAEDPTTPFAIVDMVS 611 (742)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~iv~~l~ 611 (742)
+-+..+.+- .++.|.+.+++.
T Consensus 756 ~Ln~rd~Ll---~qy~plfi~vag 776 (970)
T COG5656 756 ILNIRDELL---SQYLPLFISVAG 776 (970)
T ss_pred HHHccchhH---HhhhHHHHHHHh
Confidence 666655332 234444444433
No 86
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0083 Score=68.55 Aligned_cols=211 Identities=11% Similarity=0.031 Sum_probs=137.7
Q ss_pred CchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc---
Q 004614 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI--- 448 (742)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~--- 448 (742)
.|+|.++...+..++++....=.-+..+++...+..+ .|.++-|-=.+..++..||..-+++.+.. +.+.|.
T Consensus 741 vpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~e~il~d----L~e~Y~s~k 815 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYPEDILPD----LSEEYLSEK 815 (982)
T ss_pred ccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcchhhHHH----HHHHHHhcc
Confidence 5777788888888876432222235678999999999 67877776677777778888766655444 445552
Q ss_pred --CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHh
Q 004614 449 --DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICE 526 (742)
Q Consensus 449 --~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~ 526 (742)
.-.+.|..+|+++..+....|+.+..|...++-..+.+..|++...|.......+.++......+..++-+.+..++.
T Consensus 816 ~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~ 895 (982)
T KOG4653|consen 816 KKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILS 895 (982)
T ss_pred cCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 124668889999999999999999999998877766676677666565433444444333222333455555554444
Q ss_pred hc-cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHH----HHHHHHHhcC-CCChhhHHHHHHHHHHH
Q 004614 527 GI-ASSSWSSKRKSAKAICKLGEILGESLSNYHHV----LLESIMKEVP-GRLWEGKDALLYAIGSI 587 (742)
Q Consensus 527 ~L-~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~----l~p~L~~~l~-~r~~~~ke~vl~aL~~l 587 (742)
.. .|.+.-+||+|+..|..+-..+|..+.|.+.. +.-.+....+ ++....|-.+..++-++
T Consensus 896 l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 896 LETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 33 57889999999999999999999877664322 2233333332 23333455555554444
No 87
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.41 E-value=0.63 Score=57.03 Aligned_cols=121 Identities=15% Similarity=0.122 Sum_probs=78.9
Q ss_pred hhhhhhHHhhHHHHHHHhhhhhc-hhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhC
Q 004614 89 LNSKRGAAFGFSKIAKQAGDALK-PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSG 167 (742)
Q Consensus 89 w~~r~~A~~~l~~i~~~~~~~l~-~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~ 167 (742)
..-|--|.=+++.|.+.-...+. |.+. -.+-+-+.|.+..||+|+.+..+..|-.-++.+.+|++. +.+++.
T Consensus 830 ialRtkAlKclS~ive~Dp~vL~~~dvq---~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~----i~erIl 902 (1692)
T KOG1020|consen 830 IALRTKALKCLSMIVEADPSVLSRPDVQ---EAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQ----IIERIL 902 (1692)
T ss_pred HHHHHHHHHHHHHHHhcChHhhcCHHHH---HHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHH----HHhhcC
Confidence 34444566777777775433332 3222 223334589999999999999988775445677777776 677888
Q ss_pred CCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHH
Q 004614 168 SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAG 219 (742)
Q Consensus 168 ~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA 219 (742)
|..--||+-+..-+.++++..+ .+... .++...+++-..|.+..|.+-+
T Consensus 903 DtgvsVRKRvIKIlrdic~e~p--df~~i-~~~cakmlrRv~DEEg~I~kLv 951 (1692)
T KOG1020|consen 903 DTGVSVRKRVIKILRDICEETP--DFSKI-VDMCAKMLRRVNDEEGNIKKLV 951 (1692)
T ss_pred CCchhHHHHHHHHHHHHHHhCC--ChhhH-HHHHHHHHHHhccchhHHHHHH
Confidence 9999999999999999988754 34333 2444444444456555454443
No 88
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.49 Score=55.16 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=97.9
Q ss_pred CCCCH-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHH
Q 004614 126 YDPDK-NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAA 204 (742)
Q Consensus 126 ~Dp~~-~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l 204 (742)
.+.|. ..++||..|..++..+- .+..+++++++.+..++..+++-.=.=+-...+..+.+. .-.+..+
T Consensus 29 ~s~n~~~kidAmK~iIa~M~~G~------dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~-----lLavNti 97 (757)
T COG5096 29 ESSNDYKKIDAMKKIIAQMSLGE------DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA-----LLAVNTI 97 (757)
T ss_pred cccChHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHH
Confidence 44444 46678899998888642 255555556666666777888777665655555554222 2334555
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCc
Q 004614 205 FRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (742)
Q Consensus 205 ~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~ 284 (742)
.+-+.|..+.+|-.| +++++.+ ...+++..+++.+.+ .+.++++.||+.|.-++.++-+...+
T Consensus 98 ~kDl~d~N~~iR~~A---lR~ls~l-------------~~~el~~~~~~~ik~-~l~d~~ayVRk~Aalav~kly~ld~~ 160 (757)
T COG5096 98 QKDLQDPNEEIRGFA---LRTLSLL-------------RVKELLGNIIDPIKK-LLTDPHAYVRKTAALAVAKLYRLDKD 160 (757)
T ss_pred HhhccCCCHHHHHHH---HHHHHhc-------------ChHHHHHHHHHHHHH-HccCCcHHHHHHHHHHHHHHHhcCHh
Confidence 666789999999998 4444321 134577888888875 46778899999999999998765443
Q ss_pred ccccchhh--HHHHHHHhccccchHHH
Q 004614 285 AIRPHLSD--LVSCMLESLSSLEDQGL 309 (742)
Q Consensus 285 ~l~p~lp~--Lv~~Ll~~ls~~e~~~~ 309 (742)
. .++ ++..+..++.+.+|.++
T Consensus 161 l----~~~~g~~~~l~~l~~D~dP~Vi 183 (757)
T COG5096 161 L----YHELGLIDILKELVADSDPIVI 183 (757)
T ss_pred h----hhcccHHHHHHHHhhCCCchHH
Confidence 2 222 34444555566666554
No 89
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.38 E-value=0.00027 Score=46.90 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=26.6
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHhcc
Q 004614 158 IFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (742)
Q Consensus 158 il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~ 187 (742)
++|.+++.++|++|+||++|+.+|+.+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
No 90
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.35 Score=53.36 Aligned_cols=246 Identities=13% Similarity=0.045 Sum_probs=126.8
Q ss_pred HHHHHHHhhhhhccccHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhh
Q 004614 398 SMLLRLLFPVVKEEKSAAAKRAFASACASVL-KYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGY 475 (742)
Q Consensus 398 ~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~-~~~~~~~~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~ 475 (742)
..+.+-|-.++ +|+-+.|.-.++.++..+. ++.+++.+...+.-+..++. ..-..|.++..++..++...|....-+
T Consensus 263 ~q~rpfL~~wl-s~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 263 LQLRPFLNSWL-SDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHHHh-cCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 34444455566 6766777767777777664 44567777777766666664 233456677777777766655433222
Q ss_pred hhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchh
Q 004614 476 HAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLS 555 (742)
Q Consensus 476 ~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~ 555 (742)
-..+-.+ ..|.++.+....... -+-.|+...+...+..| -..+.|.+-..|.-+..++..|+..++..-.
T Consensus 342 N~evEsL----Isd~Nr~IstyAITt--LLKTGt~e~idrLv~~I----~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 342 NKEVESL----ISDENRTISTYAITT--LLKTGTEETIDRLVNLI----PSFVHDMSDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred ChhHHHH----hhcccccchHHHHHH--HHHcCchhhHHHHHHHH----HHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence 2211111 123333332221111 12234444444433333 3333444444555566666666655544322
Q ss_pred hhHHHHHHHHH----------------HhcCCCChhhHHHHHHHHHHHHhhcccccC---------cC--CCCchHHHHH
Q 004614 556 NYHHVLLESIM----------------KEVPGRLWEGKDALLYAIGSISTSCHKDIS---------AE--DPTTPFAIVD 608 (742)
Q Consensus 556 ~~~~~l~p~L~----------------~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~---------~~--~~~~~~~iv~ 608 (742)
.++.-+...|. .... -.++.||.+|+-|..+++-|...-- .+ .++-....+.
T Consensus 412 s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvr 490 (898)
T COG5240 412 SYLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVR 490 (898)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHH
Confidence 22222222221 1111 0235688888888888887752100 01 1111222333
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhhhcC
Q 004614 609 MVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (742)
Q Consensus 609 ~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~~~~ 655 (742)
.+...+-=+|.-+|.+|..+|.++.-...+....+-+.-++.+..++
T Consensus 491 hIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD 537 (898)
T COG5240 491 HIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLND 537 (898)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhc
Confidence 33333333477899999999999987765544455677777666554
No 91
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.31 Score=52.63 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHHHhhcccccCcCCCCchHHH
Q 004614 532 SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR-----LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI 606 (742)
Q Consensus 532 sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r-----~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i 606 (742)
..+||..|..+||.+.+.+..-..+-+..++..-+..+-.+ ...+|-.++.+++.+.++= .+.-.+.+..+.+
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~--a~~lq~~~wA~~~ 574 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP--ALPLQTAPWASQA 574 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc--cccccCCCchHHH
Confidence 35899999999999998775444444444554444444332 3568888999999998642 3322356778888
Q ss_pred HHHHHHHHhh-hCHHHHHHHHHHHHHHH
Q 004614 607 VDMVSSACRK-KIKKYREAAFSCLEQVI 633 (742)
Q Consensus 607 v~~l~~~~~~-~~~~~R~~a~~~Lg~l~ 633 (742)
.+++...+.+ +|.++|..|+.+|..-.
T Consensus 575 F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 575 FNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 8887776655 69999999999886543
No 92
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.36 E-value=0.18 Score=65.56 Aligned_cols=388 Identities=13% Similarity=0.121 Sum_probs=200.2
Q ss_pred hcCCCCHHHHHHHHHHHHHhccCCHHHHHHH--HHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHH
Q 004614 124 FQYDPDKNVQDAMAHIWKSLVADPKRTIDEH--LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIW 201 (742)
Q Consensus 124 ~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~--~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~ 201 (742)
...|++|.+|.......+ .+ .+.+ -+..+..++..+.+..--.|+++...++.+..+.+ ..+.|++....
T Consensus 537 aia~~~~~i~~~v~~~l~---~~----~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 537 AIADTDPDIRIRVLSSLN---ER----FDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-AYVLPSLRKTL 608 (2341)
T ss_pred hccCCCcchhhhHHhhhc---cc----hhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-HHHhHHHHHHH
Confidence 445888888877655443 11 1111 23455557788888888889999999988877655 44555555444
Q ss_pred HHHHHHcc-CCcHHHHHHHH--HHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004614 202 TAAFRAMD-DIKETVRTAGD--KLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKL 278 (742)
Q Consensus 202 ~~l~~~l~-D~~~~VR~aA~--~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~l 278 (742)
..+..-+. +... |.... +.+..+.........+. ....+..++|.+. +....+.+.+..++++|
T Consensus 609 l~~~s~l~~sg~~--r~~~~~a~~~~~~i~~~~~~i~~~------v~~~l~~~~~~~~-----~~~s~~~~~~~~~~~eL 675 (2341)
T KOG0891|consen 609 LELLTELEFSGMA--RTKEESAKLLCELIISSPVLISPY------VGPILLVLLPKLQ-----DPSSGVEKAVLETIGEL 675 (2341)
T ss_pred HHHhchhhhcchH--HhHHHHHHHhhHHHHHHHHHHHhh------cCchHHHHHHHHh-----ccchhhHHHHHHHHHHH
Confidence 43332222 2222 33332 22222222222222222 2235556666553 23457778889999999
Q ss_pred HHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHH--------Hhhc
Q 004614 279 VKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLC--------INVV 350 (742)
Q Consensus 279 a~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~--------~~~~ 350 (742)
+...|..++.+...+++.+.+.+.+.....++-. .-.++..+ .++.
T Consensus 676 ~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~a--------------------------slk~l~~l~s~~~~~v~p~~ 729 (2341)
T KOG0891|consen 676 CAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLA--------------------------ALKALGQLESSTGYVVDPYL 729 (2341)
T ss_pred HHhccchhhhccchHHHHHHHHHHHhhhhhchhH--------------------------HHHHhhhhhcccceEecccc
Confidence 9999998988888888888887764221111100 00111111 1222
Q ss_pred ChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHH--hhhhhccccH-HHHHHHHHHHHHH
Q 004614 351 DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLL--FPVVKEEKSA-AAKRAFASACASV 427 (742)
Q Consensus 351 d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~L--l~~l~~D~~~-~Vr~~~~~al~~L 427 (742)
+ -+.++..+...++....-..|.++.+.++.+ ..+.||........ .+...+..+. .-+..+..++..=
T Consensus 730 ~---~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~-----g~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 801 (2341)
T KOG0891|consen 730 D---YPELLDILINILKTEQSSTIRREAIRLLGLL-----GALDPYKHKVTEGTSASKISSEQIKSDIDISLLESGVNPS 801 (2341)
T ss_pred c---ChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh-----cccchhHHHHHhhhhhHhhhhccccccchHHHHHhhhhhh
Confidence 2 2556666666666554445666777776533 34555544333332 2222111111 0011011111000
Q ss_pred -HhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhc
Q 004614 428 -LKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT 506 (742)
Q Consensus 428 -~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~ 506 (742)
..+.+-..+..++.-+.+. .+...-.....+..-+....+.....+++.++|.+...+.......+..+.......+
T Consensus 802 ~~e~~p~v~I~~l~~~l~d~--~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~ 879 (2341)
T KOG0891|consen 802 NDEYYPAVTIHALMGILKDP--SLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLV 879 (2341)
T ss_pred hhhhhhHHHHHHHhhhhhhh--hhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhh
Confidence 0001101111111000000 0112223344556666666677778899999998877655322222222222222223
Q ss_pred CCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc
Q 004614 507 SGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV 569 (742)
Q Consensus 507 ~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l 569 (742)
.-.+..+.+|.+.+..++...+. .+-.+.....-.+.++...++..|..+++..++..+..+
T Consensus 880 ~~~~~h~~~~~~~i~~~i~~~~~-~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~ 941 (2341)
T KOG0891|consen 880 AIVRQHIRPYMESIFTLIKDFWP-PDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVL 941 (2341)
T ss_pred hccchhHhhhhhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheee
Confidence 33334677888888887776654 223334444556667777788888888888888877776
No 93
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.35 E-value=0.0024 Score=61.98 Aligned_cols=109 Identities=11% Similarity=0.168 Sum_probs=80.1
Q ss_pred hhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCC
Q 004614 91 SKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRL 170 (742)
Q Consensus 91 ~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~ 170 (742)
-|-.+..++|-++-.-...++|+ +|.+|..+.|++|.||+.+..+...|+..- .-+.-..++..++..+.|++
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~----~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPY----LPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhH----HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHHHcCCC
Confidence 45566777777666655666665 555566669999999999999999987532 22233445555677789999
Q ss_pred hhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHH
Q 004614 171 WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFR 206 (742)
Q Consensus 171 wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~ 206 (742)
+++|..|...|.++.....+..+.+++++++..+-.
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 999999999999999876657777777777665543
No 94
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.30 E-value=0.0036 Score=60.78 Aligned_cols=114 Identities=11% Similarity=0.028 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHH
Q 004614 532 SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVS 611 (742)
Q Consensus 532 sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~ 611 (742)
++.+|..+..++|||+...+..+. ..+|.+.+.|++..+.+|..++..|..++.. +.++ ....++..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~--d~ik-----~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE----PYLPNLYKCLRDEDPLVRKTALLVLSHLILE--DMIK-----VKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc--Ccee-----ehhhhhHHHH
Confidence 367999999999999998876554 4667777888898999999999999999863 3333 2455656666
Q ss_pred HHHhhhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhhhcCc
Q 004614 612 SACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGST 656 (742)
Q Consensus 612 ~~~~~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~~~~~ 656 (742)
..+.|.++.+|..|..++..+.....+.-+.+.+.+++..+....
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~ 114 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCY 114 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcc
Confidence 777899999999999999999998645567889999999887654
No 95
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.29 E-value=0.27 Score=54.05 Aligned_cols=268 Identities=10% Similarity=-0.066 Sum_probs=151.7
Q ss_pred hhhhhhHH----hhHHHHHHHhhhhhchhhh-------hhhHHHhhhc-CCCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 004614 89 LNSKRGAA----FGFSKIAKQAGDALKPHLR-------LLIPKLVRFQ-YDPDKNVQDAMAHIWKSLVADPKRTIDEHLD 156 (742)
Q Consensus 89 w~~r~~A~----~~l~~i~~~~~~~l~~~l~-------~lip~L~~~~-~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~ 156 (742)
|..|..+. |-|.-+.+ ..+-|+.||. ..++-|...+ .|+.+.|+..+. |...-.+.+.
T Consensus 17 w~~~~~a~~~p~~~l~~la~-ldeRL~AhLdgL~~~G~~a~~~L~~aL~~d~~~ev~~~aa--~al~~~~~~~------- 86 (410)
T TIGR02270 17 WRQWKRALVAPDYVLEDLAE-LEERLLAHVDGLVLAGKAATELLVSALAEADEPGRVACAA--LALLAQEDAL------- 86 (410)
T ss_pred HHHHHHHhcCCCCCHHHHHh-HHHHHHHHHHHHHHhhHhHHHHHHHHHhhCCChhHHHHHH--HHHhccCChH-------
Confidence 77776665 55555543 2334444443 4456666666 688898887533 3222222211
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhcc
Q 004614 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (742)
Q Consensus 157 ~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~ 236 (742)
.++.|+..+.|.+..||.++..||+.+- .+ +..+.+...++|.++.||.++..++.. +..+
T Consensus 87 -~~~~L~~~L~d~~~~vr~aaa~ALg~i~----~~-------~a~~~L~~~L~~~~p~vR~aal~al~~------r~~~- 147 (410)
T TIGR02270 87 -DLRSVLAVLQAGPEGLCAGIQAALGWLG----GR-------QAEPWLEPLLAASEPPGRAIGLAALGA------HRHD- 147 (410)
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHHHhcCC----ch-------HHHHHHHHHhcCCChHHHHHHHHHHHh------hccC-
Confidence 2566788888888889999999998651 12 344445555799999999988544432 1111
Q ss_pred ccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHh
Q 004614 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHA 316 (742)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a 316 (742)
....+++.| .+.+..||..++.+++.+-. +..+|.|...+.+.++.+..-
T Consensus 148 ----------~~~~L~~~L-----~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~a----- 197 (410)
T TIGR02270 148 ----------PGPALEAAL-----THEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFA----- 197 (410)
T ss_pred ----------hHHHHHHHh-----cCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHH-----
Confidence 223445543 35688999999999987652 234555666676655544321
Q ss_pred hhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhccccccc
Q 004614 317 ANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY 396 (742)
Q Consensus 317 ~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~ 396 (742)
|++.+...-+. .-++.+...... .|.+.+.....++... -
T Consensus 198 -------------------------A~~al~~lG~~----~A~~~l~~~~~~-~g~~~~~~l~~~lal~----------~ 237 (410)
T TIGR02270 198 -------------------------ALEAGLLAGSR----LAWGVCRRFQVL-EGGPHRQRLLVLLAVA----------G 237 (410)
T ss_pred -------------------------HHHHHHHcCCH----hHHHHHHHHHhc-cCccHHHHHHHHHHhC----------C
Confidence 11111111111 112222221211 2445444433333211 1
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 004614 397 TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSS 466 (742)
Q Consensus 397 ~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~ 466 (742)
.+..+..|...+ +|+ .+|..++.++|.+- -.+.++.+++.. +|+..+..+++.+..|..
T Consensus 238 ~~~a~~~L~~ll-~d~--~vr~~a~~AlG~lg-------~p~av~~L~~~l-~d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 238 GPDAQAWLRELL-QAA--ATRREALRAVGLVG-------DVEAAPWCLEAM-REPPWARLAGEAFSLITG 296 (410)
T ss_pred chhHHHHHHHHh-cCh--hhHHHHHHHHHHcC-------CcchHHHHHHHh-cCcHHHHHHHHHHHHhhC
Confidence 226677777777 444 38999999999985 223444445554 345588888888888864
No 96
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.25 E-value=0.16 Score=58.88 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHH
Q 004614 532 SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL-WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMV 610 (742)
Q Consensus 532 sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~-~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l 610 (742)
+..+|..+.-+++.+|-.-+.. ....+|.|.+.|.-.+ -..|..++-+++.+|.... ..+...++.+
T Consensus 944 ~~~vra~~vvTlakmcLah~~L----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--------am~d~YiP~I 1011 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRL----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--------AMTDRYIPMI 1011 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--------HHHHHhhHHH
Confidence 4578888889999999764432 4568888988885433 5688889999999886542 2245556666
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHHH
Q 004614 611 SSACRKKIKKYREAAFSCLEQVIK 634 (742)
Q Consensus 611 ~~~~~~~~~~~R~~a~~~Lg~l~~ 634 (742)
...++|..+-+|+.++-.|.+|+.
T Consensus 1012 ~~~L~Dp~~iVRrqt~ilL~rLLq 1035 (1529)
T KOG0413|consen 1012 AASLCDPSVIVRRQTIILLARLLQ 1035 (1529)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHh
Confidence 666666677777777777666654
No 97
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.25 E-value=0.23 Score=58.04 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=67.3
Q ss_pred hhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchh
Q 004614 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP--KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ 192 (742)
Q Consensus 115 ~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~--~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~ 192 (742)
..+++.|...+...+..+.-.+....+-|.-.. +..+. -..+++.|...+.+++.+.++.+..+|.+|-.. +.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd---~~ 363 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD---PE 363 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC---HH
Confidence 357777777777778887777777777766432 11121 124677777777788888999999999888554 34
Q ss_pred hhhHHHH--HHHHHHHHccCCcHHHHHHHHHHHHHH
Q 004614 193 VGKHLRR--IWTAAFRAMDDIKETVRTAGDKLCRSV 226 (742)
Q Consensus 193 l~~~L~~--i~~~l~~~l~D~~~~VR~aA~~~~~~l 226 (742)
+.+.+.. ++|.+...+.|.+ .|.-+...+..+
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~L 397 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKDPN--FREVALKILYNL 397 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHh
Confidence 4555554 6777777777653 344444444433
No 98
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.24 E-value=0.0025 Score=53.74 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=66.6
Q ss_pred HHHHhhc-cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCC
Q 004614 522 SLICEGI-ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDP 600 (742)
Q Consensus 522 ~~l~~~L-~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~ 600 (742)
+.+++.+ .+++|.+|..++.+||.+. -+...|.|.+.+++..+.+|..++.+|+.+-
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------------ 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG------------ 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------
Confidence 4556666 8999999999999999322 2467899999998888999999999999762
Q ss_pred CchHHHHHHHHHHHhh-hCHHHHHHHHHHHH
Q 004614 601 TTPFAIVDMVSSACRK-KIKKYREAAFSCLE 630 (742)
Q Consensus 601 ~~~~~iv~~l~~~~~~-~~~~~R~~a~~~Lg 630 (742)
.+..++.+.+.+.+ ++..+|..|+.+||
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 24566666666655 46778999999986
No 99
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.21 E-value=0.16 Score=56.35 Aligned_cols=278 Identities=12% Similarity=0.101 Sum_probs=152.2
Q ss_pred hhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhh----ccccHHHHHHHHHHHHHHHhhC
Q 004614 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK----EEKSAAAKRAFASACASVLKYA 431 (742)
Q Consensus 356 ~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~----~D~~~~Vr~~~~~al~~L~~~~ 431 (742)
+.++..|.+.++.+. .....-..+++..++...+..+.|+.+.+++.+...+. +..|+.-.-....++|.++++.
T Consensus 25 ~~ll~~Lf~~i~~~~-s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~ 103 (435)
T PF03378_consen 25 QQLLQNLFALIEKPG-SAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHTT--STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence 455666666665431 12222344555555666788889998888888777662 4456666666788999999986
Q ss_pred CH---HHHHH----HHHHHHHhhcCC-chhHHHHHHHHHHHHhhch-hhhhhhhhhhhhHhhHh-hcCCchHHHHHHHHH
Q 004614 432 TP---SQAQK----LIEETAALHIDD-KNSQISCAILLKSYSSVAS-DVLSGYHAVIVPVIFIS-RFEDDKYVSDLFEEL 501 (742)
Q Consensus 432 ~~---~~~~~----li~~l~~~~~~d-~~~r~~a~~~l~~i~~~~~-~~~~~~~~~vlP~l~~~-~~d~~~~v~~~~~~~ 501 (742)
.+ +.+.. +.+.+...+..| .+---.+.+++..+....+ +.+.+....++|.++.. ..+....+ +.....
T Consensus 104 ~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrL 182 (435)
T PF03378_consen 104 CEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRL 182 (435)
T ss_dssp -GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHH
Confidence 53 22223 333333333333 1222244566666655554 44545555566665543 22222222 222222
Q ss_pred HHHhcCCChhhH--HhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHhcC-CCChhhH
Q 004614 502 WEENTSGDRVTL--QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKEVP-GRLWEGK 577 (742)
Q Consensus 502 ~~~~~~~~~~~i--~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~-~~~~~~~~l~p~L~~~l~-~r~~~~k 577 (742)
+..+....+..+ ..++..++.++.+.+.+..- -..+.+.|..+...++. .+.+|+++++-.+.++++ .|++.-+
T Consensus 183 L~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~ 260 (435)
T PF03378_consen 183 LQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFV 260 (435)
T ss_dssp HHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHH
T ss_pred HHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHH
Confidence 222222112222 36788899999999988653 36688999999999986 689999999999999995 5666655
Q ss_pred HHHHHHHHHHHhhccc-cc----CcCCCCchHHHHH-HHHHHHhh-hCHHHHHHHHHHHHHHHHHcC
Q 004614 578 DALLYAIGSISTSCHK-DI----SAEDPTTPFAIVD-MVSSACRK-KIKKYREAAFSCLEQVIKAFR 637 (742)
Q Consensus 578 e~vl~aL~~l~~~~~~-~~----~~~~~~~~~~iv~-~l~~~~~~-~~~~~R~~a~~~Lg~l~~~~~ 637 (742)
...+..++.++.+.+. .+ ..-.+.+...++. .++..+++ .+..=|+.++-.+.+++...+
T Consensus 261 ~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~ 327 (435)
T PF03378_consen 261 KRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESP 327 (435)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccH
Confidence 5555555555443321 00 0001234445554 34455544 355568888888888876543
No 100
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.0021 Score=65.81 Aligned_cols=195 Identities=19% Similarity=0.256 Sum_probs=114.1
Q ss_pred hHHHHHHHHhccccchhhhhhHHhhHHHHHH---Hhhhh------hchhh------------------------------
Q 004614 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAK---QAGDA------LKPHL------------------------------ 114 (742)
Q Consensus 74 ~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~---~~~~~------l~~~l------------------------------ 114 (742)
.-|+.|+++..+.. --.|+-+.-|||.|+- +|++. |+|.|
T Consensus 157 ~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 157 GAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CchHHHHHHHcCch-HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 46788888775543 3456777788887763 33332 23322
Q ss_pred ------hhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH-HHHHHHHhhCCCChhHHHHHHHHHHHHhcc
Q 004614 115 ------RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL-IFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (742)
Q Consensus 115 ------~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~-il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~ 187 (742)
.+.+|.|....|.-++.|---++-....|+..+...+...++. +..-|+..+.+++..+..-+..++|+++.|
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 1334444333333333332222223344555555555555553 667788888888889999999999999987
Q ss_pred CCch-h-hhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHH-HHhHHHhhcCCCCCh
Q 004614 188 RKFD-Q-VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD-IVLPFLLAEGILSKV 264 (742)
Q Consensus 188 ~~~~-~-l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~-~lLP~Ll~~gl~~~~ 264 (742)
.... + +-+ ...++.+...|...|+.+|+.| |++++.++. |+....+.+++ .++|.|++. +.+..
T Consensus 316 ~D~QTqviI~--~G~L~a~~~lLs~~ke~irKEa---CWTiSNITA-------Gnteqiqavid~nliPpLi~l-ls~ae 382 (526)
T COG5064 316 SDDQTQVIIN--CGALKAFRSLLSSPKENIRKEA---CWTISNITA-------GNTEQIQAVIDANLIPPLIHL-LSSAE 382 (526)
T ss_pred Cccceehhee--cccHHHHHHHhcChhhhhhhhh---heeeccccc-------CCHHHHHHHHhcccchHHHHH-HHHHH
Confidence 6521 1 110 0122333334788899999998 888876542 22222333333 467887752 33334
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004614 265 DSISKASIGVVMKLVKGA 282 (742)
Q Consensus 265 ~~vr~~a~~~L~~la~~~ 282 (742)
--+|+-||+++.+....+
T Consensus 383 ~k~kKEACWAisNatsgg 400 (526)
T COG5064 383 YKIKKEACWAISNATSGG 400 (526)
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 567889999998876544
No 101
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.75 Score=52.94 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=93.3
Q ss_pred hhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcc
Q 004614 243 DARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQ 322 (742)
Q Consensus 243 ~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~ 322 (742)
.+..++=+.+-.+++ +. ++..+|..|.++|++....-...++--. +..|+..+.. +|..+ ..|-..
T Consensus 289 ~GnAILYE~V~TI~~--I~-~~~~LrvlainiLgkFL~n~d~NirYva---Ln~L~r~V~~-d~~av---qrHr~t---- 354 (866)
T KOG1062|consen 289 AGNAILYECVRTIMD--IR-SNSGLRVLAINILGKFLLNRDNNIRYVA---LNMLLRVVQQ-DPTAV---QRHRST---- 354 (866)
T ss_pred chhHHHHHHHHHHHh--cc-CCchHHHHHHHHHHHHhcCCccceeeee---hhhHHhhhcC-CcHHH---HHHHHH----
Confidence 455666666666653 22 4678888999999888776655554322 4444444442 22211 111100
Q ss_pred hhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHH
Q 004614 323 TEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLR 402 (742)
Q Consensus 323 ~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~ 402 (742)
-++.++- ...+-=.+|+|-....+++.....++..|+..+.+. +...|..++.-+..++.+|..+=.=|++.+++
T Consensus 355 --IleCL~D--pD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~ 429 (866)
T KOG1062|consen 355 --ILECLKD--PDVSIKRRALELSYALVNESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLK 429 (866)
T ss_pred --HHHHhcC--CcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 0000000 000111457777777777778888899999888765 66678888888888888876654445555554
Q ss_pred HHhhhhhccccHHHHHHHHHHHHHHHhhC
Q 004614 403 LLFPVVKEEKSAAAKRAFASACASVLKYA 431 (742)
Q Consensus 403 ~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~ 431 (742)
.+-.+ ..-|+...+..+=.|+...
T Consensus 430 Vl~~a-----G~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 430 VLKTA-----GDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHhc-----ccccchhhHHHHHHHHhcC
Confidence 44322 2234444555555555444
No 102
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.16 E-value=0.00062 Score=45.16 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=26.4
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Q 004614 520 IVSLICEGIASSSWSSKRKSAKAICKLGEI 549 (742)
Q Consensus 520 il~~l~~~L~~~sw~vR~~Aa~~lg~La~~ 549 (742)
|++.+.+.+.|++|+||.+|+.++|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578888999999999999999999999874
No 103
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.12 E-value=0.21 Score=55.09 Aligned_cols=152 Identities=11% Similarity=0.115 Sum_probs=93.9
Q ss_pred hhhchhhhhhhHHHhhhcCCCCHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHh
Q 004614 108 DALKPHLRLLIPKLVRFQYDPDKN--VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADII 185 (742)
Q Consensus 108 ~~l~~~l~~lip~L~~~~~Dp~~~--VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~ 185 (742)
+.+.....+++-+++.+...|.-. |=+-....+....++.++- .+.+++++..++.+..+++..||.-+|.-++.+.
T Consensus 41 ~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg-~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 41 HEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEG-EELVAGTFYHLLRGTESKDKKVRKRSLQILALLS 119 (885)
T ss_pred HhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhh-hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH
Confidence 345555667777777777765432 2223344444344433332 5678889999999999999999999999988887
Q ss_pred ccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChH
Q 004614 186 QGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVD 265 (742)
Q Consensus 186 ~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~ 265 (742)
.... +.=+.....++..+..-+=|.++.||..|...+..+.... ++ ....... ++-++++ .+++.
T Consensus 120 d~v~-eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~--------~n--een~~~n-~l~~~vq---nDPS~ 184 (885)
T COG5218 120 DVVR-EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME--------LN--EENRIVN-LLKDIVQ---NDPSD 184 (885)
T ss_pred Hhcc-hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc--------CC--hHHHHHH-HHHHHHh---cCcHH
Confidence 7554 2112223344555555556889999999966655554211 11 1122334 4555553 45788
Q ss_pred HHHHHHHHHH
Q 004614 266 SISKASIGVV 275 (742)
Q Consensus 266 ~vr~~a~~~L 275 (742)
|||..++.-+
T Consensus 185 EVRr~allni 194 (885)
T COG5218 185 EVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHe
Confidence 9999876554
No 104
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.053 Score=58.71 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHhhccc
Q 004614 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCHK 593 (742)
Q Consensus 515 ~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r-~~~~ke~vl~aL~~l~~~~~~ 593 (742)
+-+..++..+.....|++.++|+.|+.+||..++-.++....|.++++..++.+|-+- ..++-.+++.+|..+.++...
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 4466677777778889999999999999999999878888889999999999999442 355666666666666665432
Q ss_pred ccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCC---chHHhH----HHHHHhhhcCc
Q 004614 594 DISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP---KFFNII----FPLLFEMCGST 656 (742)
Q Consensus 594 ~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~---~~~~~v----~~il~~~~~~~ 656 (742)
.- -.++.-.|.--+....++.+.+.|-+|+.++|.+...-+++ .|.+.+ .|++..+.+.+
T Consensus 334 ~~---l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~ 400 (533)
T KOG2032|consen 334 DD---LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN 400 (533)
T ss_pred cc---hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC
Confidence 11 12233344444556677789999999999999999998763 233333 36666666554
No 105
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.39 Score=54.36 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=102.7
Q ss_pred HHHHHHHhhhcCChh-HHHHHHHHhc-------cccchhhhhhHHhhHHH-HHHHhh--hhhchhhhhhhHHHhhhcCCC
Q 004614 60 YKELCNLANEMGQPD-LIYKFMDLAN-------YQVSLNSKRGAAFGFSK-IAKQAG--DALKPHLRLLIPKLVRFQYDP 128 (742)
Q Consensus 60 yk~l~~lA~~~~~p~-lv~~fm~l~~-------~~~~w~~r~~A~~~l~~-i~~~~~--~~l~~~l~~lip~L~~~~~Dp 128 (742)
|+.+++=+-+++..+ +-..|....+ ... ...|- ..|.+ +.+... +.-+..+..++-.|+|...-|
T Consensus 22 ~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKres-i~dRI---l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Esk 97 (892)
T KOG2025|consen 22 YSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRES-IPDRI---LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESK 97 (892)
T ss_pred HHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCC-cHHHH---HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCc
Confidence 999999999999874 4455555543 221 12221 11111 222211 111235778889999999999
Q ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHc
Q 004614 129 DKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM 208 (742)
Q Consensus 129 ~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l 208 (742)
+..||.-.+.|...++.+-...-+..|+.+...++..+-|+++.||--|..||..+-+....+.. ....++..+. -
T Consensus 98 dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~--~v~n~l~~li--q 173 (892)
T KOG2025|consen 98 DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC--PVVNLLKDLI--Q 173 (892)
T ss_pred chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHH--h
Confidence 99999999999999986432333556889999999999999999999999999998543322222 1112222221 4
Q ss_pred cCCcHHHHHHHHHH
Q 004614 209 DDIKETVRTAGDKL 222 (742)
Q Consensus 209 ~D~~~~VR~aA~~~ 222 (742)
.|+.++||.+|...
T Consensus 174 nDpS~EVRRaaLsn 187 (892)
T KOG2025|consen 174 NDPSDEVRRAALSN 187 (892)
T ss_pred cCCcHHHHHHHHHh
Confidence 79999999998543
No 106
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=1.1 Score=55.58 Aligned_cols=274 Identities=10% Similarity=0.044 Sum_probs=145.6
Q ss_pred chHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-CCc
Q 004614 373 NTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDK 451 (742)
Q Consensus 373 ~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~-~d~ 451 (742)
.+..++...-..+..+++..+.+....++...+..- .-+-..++..+-.-+-+|.++++ +.+...++++..++. +++
T Consensus 196 ~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~-~s~~~~~~~~~he~i~~L~~~~p-~ll~~vip~l~~eL~se~~ 273 (1266)
T KOG1525|consen 196 DTIKEADKLASDLIERCADNLEDTIANFLNSCLTEY-KSRQSSLKIKYHELILELWRIAP-QLLLAVIPQLEFELLSEQE 273 (1266)
T ss_pred CccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhc-cccccchhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhcchH
Confidence 344455555556677777777777666666655433 11334455555555555554443 456777888887775 677
Q ss_pred hhHHHHHHHHHHHHhhchhhhh-hhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccC
Q 004614 452 NSQISCAILLKSYSSVASDVLS-GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS 530 (742)
Q Consensus 452 ~~r~~a~~~l~~i~~~~~~~~~-~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~ 530 (742)
..|..+..+++.+...-...+. .|-+.+--+ +-...|-..+||-.|.+.-....-+.+. +..-.. +.-.+.....|
T Consensus 274 ~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~f-l~r~~D~~~~vR~~~v~~~~~~l~~~~~-~~~~~~-~~~~l~~~~~D 350 (1266)
T KOG1525|consen 274 EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAF-LGRFNDISVEVRMECVESIKQCLLNNPS-IAKAST-ILLALRERDLD 350 (1266)
T ss_pred HHHHHHHHHHHHHHhcchhhhcccchHHHHHH-HHHhccCChhhhhhHHHHhHHHHhcCch-hhhHHH-HHHHHHhhcCC
Confidence 8899888888888654443332 233333222 2234577778887666554443333221 111111 11222223344
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhh--cc-cccCcCCCCchHHHH
Q 004614 531 SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS--CH-KDISAEDPTTPFAIV 607 (742)
Q Consensus 531 ~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~--~~-~~~~~~~~~~~~~iv 607 (742)
..-.+|....-...+..... ..+.+.++..+-++++++-|.+|..++..|..+-+. |. ..-.....+-...|-
T Consensus 351 ~~~rir~~v~i~~~~v~~~~----l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp 426 (1266)
T KOG1525|consen 351 EDVRVRTQVVIVACDVMKFK----LVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIP 426 (1266)
T ss_pred hhhhheeeEEEEEeehhHhh----hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccc
Confidence 44455554433333333221 113444888889999999999999999999999875 11 100011122234444
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhhhcCc
Q 004614 608 DMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGST 656 (742)
Q Consensus 608 ~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~~~~~ 656 (742)
.-+++.+-.++.+.|...-..|..+..-.+ ....+-+.++...+...+
T Consensus 427 ~kLL~~~y~~~~~~r~~vE~il~~~L~P~~-l~~q~Rmk~l~~~l~~~D 474 (1266)
T KOG1525|consen 427 DKLLHLYYENDLDDRLLVERILAEYLVPYP-LSTQERMKHLYQLLAGLD 474 (1266)
T ss_pred hhHHhhHhhccccHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhccc
Confidence 445555555556666332333333332221 233445556655554443
No 107
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.96 E-value=0.22 Score=52.61 Aligned_cols=138 Identities=13% Similarity=0.204 Sum_probs=97.6
Q ss_pred hhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccH---------HHHHHHHhhhhhccccHHHHH
Q 004614 348 NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT---------SMLLRLLFPVVKEEKSAAAKR 418 (742)
Q Consensus 348 ~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~---------~~ll~~Ll~~l~~D~~~~Vr~ 418 (742)
..+|.+.-.+.++.+.+.++.+ +...+..|++++.++...+|..+.+.. ..+++.+...+ ++.+++++.
T Consensus 55 ~Lld~~~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~ 132 (298)
T PF12719_consen 55 CLLDKELAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFL-DSENPELQA 132 (298)
T ss_pred HHhChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHH-hcCCHHHHH
Confidence 4456666778888888888654 667888999999999999986654332 36888888888 566889999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhh
Q 004614 419 AFASACASVLKYATPSQAQKLIEETAALHI-----DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISR 487 (742)
Q Consensus 419 ~~~~al~~L~~~~~~~~~~~li~~l~~~~~-----~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~ 487 (742)
.++.+++.|+-...-..-.+++..++-.|+ ++...|+..+.++..++...+.+-......++|.+....
T Consensus 133 ~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 133 IAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999998743221112334444444453 245678888888888887776655566677888775543
No 108
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.15 Score=58.24 Aligned_cols=391 Identities=12% Similarity=0.112 Sum_probs=189.0
Q ss_pred hhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhh
Q 004614 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (742)
Q Consensus 115 ~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~ 194 (742)
..++--|.++..|.+|.||+++..+...+-...++... -..+++.|-..+.|.++-|-..|..|+..+.+..+.....
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~--~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE--DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc--ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 34666677888999999999998888777765433221 1233444444455888899999999999998755321111
Q ss_pred hHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHH
Q 004614 195 KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGV 274 (742)
Q Consensus 195 ~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~ 274 (742)
..-.++...++..+..-.+==|-. .++.+. +..... ...+..+++.+.|.|.. .+..|.-.+...
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~qi~---IL~~l~----~y~p~d---~~ea~~i~~r~~p~Lqh-----~n~avvlsavKv 262 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQIF---ILDCLA----EYVPKD---SREAEDICERLTPRLQH-----ANSAVVLSAVKV 262 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHH---HHHHHH----hcCCCC---chhHHHHHHHhhhhhcc-----CCcceEeehHHH
Confidence 111233333333332211110111 122221 221111 12345577777777653 223333344455
Q ss_pred HHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCc-chhhh---hHHhhhhccCCcH---HHHHHHHH
Q 004614 275 VMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGI-QTEKL---ENLRISIAKGSPM---WDTLDLCI 347 (742)
Q Consensus 275 L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~-~~~~~---d~~r~~~~~~s~l---~~al~~~~ 347 (742)
+....+....--.-+...+-|.|+.+++. ++ ..+|+..+--+.-+ ....+ +-.+--.-.+.|+ .+-++-..
T Consensus 263 ~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~ 340 (734)
T KOG1061|consen 263 ILQLVKYLKQVNELLFKKVAPPLVTLLSS-ES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILI 340 (734)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeecc-cc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHH
Confidence 55544433221112233344445545543 33 44454421100000 00000 0000001112222 12233334
Q ss_pred hhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHH
Q 004614 348 NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASV 427 (742)
Q Consensus 348 ~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L 427 (742)
...+.+.++++++.+.+.... ++......++++++.++...... ...++.++..+ +-+...|.+.....+..+
T Consensus 341 ~la~~~nl~qvl~El~eYate-vD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell-~~~~~yvvqE~~vvi~di 413 (734)
T KOG1061|consen 341 ELANDANLAQVLAELKEYATE-VDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELL-ETKVDYVVQEAIVVIRDI 413 (734)
T ss_pred HHhhHhHHHHHHHHHHHhhhh-hCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHH-hhcccceeeehhHHHHhh
Confidence 444555566666665554322 34444557788888877666543 56777777777 334444555556667777
Q ss_pred HhhCCHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHH-HHHHHHHH
Q 004614 428 LKYATPSQAQKLIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSD-LFEELWEE 504 (742)
Q Consensus 428 ~~~~~~~~~~~li~~l~~~~~--~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~-~~~~~~~~ 504 (742)
++..+... ..++..+..... .+++.|.+...+++..+...++ ...++..+...++|+...|+- +...+.+-
T Consensus 414 lRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ik~ 487 (734)
T KOG1061|consen 414 LRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-----ALELLESFLENFKDETAEVQLELLTAAIKL 487 (734)
T ss_pred hhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-----HHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 77766432 222222222221 4677777776777777655543 222444445567777777753 33444444
Q ss_pred hcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHH
Q 004614 505 NTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSA 540 (742)
Q Consensus 505 ~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa 540 (742)
+...+. .-+..+...++.+.+. ..+.++|-.+.
T Consensus 488 Fl~~p~-~tq~~l~~vL~~~~~d--~~~~dlrDr~l 520 (734)
T KOG1061|consen 488 FLKKPT-ETQELLQGVLPLATAD--TDNPDLRDRGL 520 (734)
T ss_pred HhcCCc-cHHHHHHHHHhhhhcc--ccChhhhhhHH
Confidence 444432 2233333343333222 22345666543
No 109
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.87 E-value=0.17 Score=54.37 Aligned_cols=173 Identities=16% Similarity=0.180 Sum_probs=104.0
Q ss_pred hHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHH
Q 004614 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (742)
Q Consensus 74 ~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~ 153 (742)
..++....+..+. .|..|.+|+..++.+- ....+|.|.....|+++.||..+..+.+.+-. ++
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------~~ 105 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD------PE 105 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC------hh
Confidence 3455555555554 5788888886644432 23467778888899999999999885554331 22
Q ss_pred HHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcH------------HHHHHHH
Q 004614 154 HLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE------------TVRTAGD 220 (742)
Q Consensus 154 ~~~~il~~Ll~~l~-~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~------------~VR~aA~ 220 (742)
-.+. ++..+. |.+|.||..+..+|+.+-.... +..++..++|... .||.++.
T Consensus 106 a~~~----li~~l~~d~~~~vR~~aa~aL~~~~~~~a-----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 106 AVPP----LVELLENDENEGVRAAAARALGKLGDERA-----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred HHHH----HHHHHHcCCcHhHHHHHHHHHHhcCchhh-----------hHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 3333 333333 7899999999999998854432 2333444555542 3555553
Q ss_pred HHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHh
Q 004614 221 KLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300 (742)
Q Consensus 221 ~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ 300 (742)
..+..++ .......+.+ ++.+....+|..+..+++.+.... ..+.+.+...
T Consensus 171 ~~l~~~~----------------~~~~~~~l~~-----~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 171 EALGELG----------------DPEAIPLLIE-----LLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred HHHHHcC----------------ChhhhHHHHH-----HHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 3332221 1112233333 234456789999999888766432 4566777777
Q ss_pred ccccchH
Q 004614 301 LSSLEDQ 307 (742)
Q Consensus 301 ls~~e~~ 307 (742)
+++....
T Consensus 222 ~~~~~~~ 228 (335)
T COG1413 222 LSDESLE 228 (335)
T ss_pred hcCCCHH
Confidence 7765443
No 110
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=1.3 Score=50.83 Aligned_cols=436 Identities=15% Similarity=0.160 Sum_probs=201.3
Q ss_pred cCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHH
Q 004614 125 QYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAA 204 (742)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l 204 (742)
++..++..|+..-.+.+-+..- .+-.--+...+.+.++.++.++|-.|..+|..++.+.-...++.|+.+-
T Consensus 73 fQskd~~LRr~vYl~Ikels~i-----sedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqa---- 143 (865)
T KOG1078|consen 73 FQSKDVSLRRMVYLAIKELSKI-----SEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQA---- 143 (865)
T ss_pred HhhcCHHHHHHHHHHHhhcccc-----chhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhH----
Confidence 5777788888887777776542 1222233444555578888899999999999999887666777777765
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCc
Q 004614 205 FRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (742)
Q Consensus 205 ~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~ 284 (742)
.-|..+.|+.+|.-..-.+.+. .. .....-.+.+-+ +..+++.-+|-.++..+-.+-++..-
T Consensus 144 ---ivd~~~avSsaalvss~hll~~-----~~-----~~vkrw~neiqe-----a~~s~~~m~QyHalglLyqirk~drl 205 (865)
T KOG1078|consen 144 ---IVDKNPAVSSAALVSSYHLLPI-----SF-----DVVKRWANEVQE-----AVNSDNIMVQYHALGLLYQIRKNDRL 205 (865)
T ss_pred ---eeccccccchHHHHHHhhhhcc-----cH-----HHHHHHHHhhhh-----ccCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 5788888888763211111100 00 000001111111 22222333344444444444332221
Q ss_pred ccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcC-------------
Q 004614 285 AIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD------------- 351 (742)
Q Consensus 285 ~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d------------- 351 (742)
+ +..++..+.. ....++...++--+... +.++.- ...-+|+..-++.|...=+
T Consensus 206 a----~sklv~~~~~--~~~~~~~A~~~lir~~~-----~~l~~~---~~~~s~~~~fl~s~l~~K~emV~~EaArai~~ 271 (865)
T KOG1078|consen 206 A----VSKLVQKFTR--GSLKSPLAVCMLIRIAS-----ELLKEN---QQADSPLFPFLESCLRHKSEMVIYEAARAIVS 271 (865)
T ss_pred H----HHHHHHHHcc--ccccchhHHHHHHHHHH-----HHhhhc---ccchhhHHHHHHHHHhchhHHHHHHHHHHHhh
Confidence 1 0111111111 00111110000000000 000000 0011223333333322111
Q ss_pred --hhHHhhHHH---HHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHH
Q 004614 352 --TESLDQLVP---HLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACAS 426 (742)
Q Consensus 352 --~~~l~~lvp---~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~ 426 (742)
...-..+.| .|.-++ ++...-.|-++.++|..++..++.... -+..=+..++ +|.| |.-+.-|+..
T Consensus 272 l~~~~~r~l~pavs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~-~cN~elE~lI----td~N---rsIat~AITt 342 (865)
T KOG1078|consen 272 LPNTNSRELAPAVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVT-VCNLDLESLI----TDSN---RSIATLAITT 342 (865)
T ss_pred ccccCHhhcchHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCcccc-ccchhHHhhh----cccc---cchhHHHHHH
Confidence 111122223 111111 222223444667777777666654442 1222222222 3444 2234566777
Q ss_pred HHhhCCHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcC--CchHHHHHHH---H
Q 004614 427 VLKYATPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE--DDKYVSDLFE---E 500 (742)
Q Consensus 427 L~~~~~~~~~~~li~~l~~~~~~-d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d--~~~~v~~~~~---~ 500 (742)
+++...+..+..++..+.....+ +++-+..+.+++.+++...|. -....++++...+.+ .-+..+..+. .
T Consensus 343 LLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~ 418 (865)
T KOG1078|consen 343 LLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR----KHTVMMNFLSNMLREEGGFEFKRAIVDAIID 418 (865)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH----HHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 77777777777777776655432 334455556777777655442 222234444332222 1112222222 2
Q ss_pred HHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhh--hHHHHHHHHHHhcCCCChhhHH
Q 004614 501 LWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN--YHHVLLESIMKEVPGRLWEGKD 578 (742)
Q Consensus 501 ~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~--~~~~l~p~L~~~l~~r~~~~ke 578 (742)
+.++... .=.+-+..++.++..+ +.+.-+..-++-|..-.+....| |...+..- .--...-+|.
T Consensus 419 iie~~pd----sKe~~L~~LCefIEDc------e~~~i~~rILhlLG~EgP~a~~Pskyir~iyNR----viLEn~ivRa 484 (865)
T KOG1078|consen 419 IIEENPD----SKERGLEHLCEFIEDC------EFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNR----VILENAIVRA 484 (865)
T ss_pred HHHhCcc----hhhHHHHHHHHHHHhc------cchHHHHHHHHHHhccCCCCCCcchhhHHHhhh----hhhhhhhhHH
Confidence 2222111 0112233333333222 23344444444444433322111 22222211 1111345788
Q ss_pred HHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHc
Q 004614 579 ALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (742)
Q Consensus 579 ~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~ 636 (742)
+.+.+|+.+..++ ....+.|...+.|.+.|++.++|..|-..|..+-+..
T Consensus 485 aAv~alaKfg~~~--------~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 485 AAVSALAKFGAQD--------VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD 534 (865)
T ss_pred HHHHHHHHHhcCC--------CCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh
Confidence 9999999887333 2346788888999999999999999999988877443
No 111
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.87 Score=52.02 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHH
Q 004614 152 DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAG 219 (742)
Q Consensus 152 ~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA 219 (742)
.+-+++++|.+..++..+..-||..|..|+..+... ++.+-|--++++...+- .+.+++..+.|
T Consensus 129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~--~~~L~pDapeLi~~fL~--~e~DpsCkRNA 192 (948)
T KOG1058|consen 129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN--FEHLIPDAPELIESFLL--TEQDPSCKRNA 192 (948)
T ss_pred HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh--hhhhcCChHHHHHHHHH--hccCchhHHHH
Confidence 457889999999999999999999999999999876 36777777788777653 34445444443
No 112
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.048 Score=60.87 Aligned_cols=240 Identities=10% Similarity=0.124 Sum_probs=137.6
Q ss_pred CCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCC--HH-------HHHHHH
Q 004614 370 IGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT--PS-------QAQKLI 440 (742)
Q Consensus 370 ~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~--~~-------~~~~li 440 (742)
-+.++|..|+..+-.|.. |..+ ...+.+.....+ .|.+..||+++.+.+.......+ .+ ......
T Consensus 210 ~D~~Vrt~A~eglL~L~e--g~kL---~~~~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF 283 (823)
T KOG2259|consen 210 QDFRVRTHAVEGLLALSE--GFKL---SKACYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAF 283 (823)
T ss_pred CCcchHHHHHHHHHhhcc--cccc---cHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHH
Confidence 355667777777655533 2222 234455556666 78999999999888876666553 11 111111
Q ss_pred HHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhh-hhhhhHhhHhhcCCchHHHHHHH-------HHHHHhcCCChh
Q 004614 441 EETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFE-------ELWEENTSGDRV 511 (742)
Q Consensus 441 ~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~-~~vlP~l~~~~~d~~~~v~~~~~-------~~~~~~~~~~~~ 511 (742)
..+.+... -.-..|..++.++|.+-..+.+.+...+ ++++.-+-.-+ ...+.-+.... +-|++-+++ .
T Consensus 284 ~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr-~ahkrpk~l~s~GewSsGk~~~advps--e 360 (823)
T KOG2259|consen 284 SSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKR-TAHKRPKALYSSGEWSSGKEWNADVPS--E 360 (823)
T ss_pred HHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhh-hcccchHHHHhcCCcccCccccccCch--h
Confidence 11111111 1345677777777777555443322222 22222111000 00111111111 113221111 1
Q ss_pred hHHhhHHHH-----HHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 004614 512 TLQLYLGEI-----VSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGS 586 (742)
Q Consensus 512 ~i~~yl~~i-----l~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~ 586 (742)
+...--..| +..+..+++|.-.+||++|...++.|+.+.+. +-..-+..|+..+++...++|...+.+|..
T Consensus 361 e~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~ 436 (823)
T KOG2259|consen 361 EDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLKAIFALTM 436 (823)
T ss_pred hccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 111111111 34556677788889999999999999986543 345677888999999889999999999999
Q ss_pred HHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 004614 587 ISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (742)
Q Consensus 587 l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~ 631 (742)
++... .+.+..++.+...+.|.+.++|++.-..|+.
T Consensus 437 Is~~l---------~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 437 ISVHL---------AIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHh---------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 98752 2356777778888888888888887665543
No 113
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.84 E-value=1.5 Score=51.12 Aligned_cols=270 Identities=9% Similarity=0.064 Sum_probs=167.6
Q ss_pred hhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHH
Q 004614 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ 435 (742)
Q Consensus 356 ~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~ 435 (742)
..++......+.....-+.|+++++.+...+ ...-+.|+.+.+++.++... .+.+.+|-.....+++.++++-++..
T Consensus 489 ~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~ 565 (1005)
T KOG2274|consen 489 QHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFA 565 (1005)
T ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhh
Confidence 3344444444444344577888888876665 33457789999999999988 67788899999999999999877543
Q ss_pred ---HHHHHHHHHHhh---cCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCc----hHHHHHHHHHHHHh
Q 004614 436 ---AQKLIEETAALH---IDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDD----KYVSDLFEELWEEN 505 (742)
Q Consensus 436 ---~~~li~~l~~~~---~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~----~~v~~~~~~~~~~~ 505 (742)
-+++.+..+..+ .+|+-.-..+-+++..++. ..+..+++....+|-+..-+..+. ........++...+
T Consensus 566 as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttv 644 (1005)
T KOG2274|consen 566 ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTV 644 (1005)
T ss_pred hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHH
Confidence 245566655554 4677444444566666655 234567888889998877665433 23455666777776
Q ss_pred cCCChhhH-HhhHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHhCcchh-----h--hHHHHHHHHHHhcCCCChhh
Q 004614 506 TSGDRVTL-QLYLGEIVSLICEGI-ASSSWSSKRKSAKAICKLGEILGESLS-----N--YHHVLLESIMKEVPGRLWEG 576 (742)
Q Consensus 506 ~~~~~~~i-~~yl~~il~~l~~~L-~~~sw~vR~~Aa~~lg~La~~~g~~~~-----~--~~~~l~p~L~~~l~~r~~~~ 576 (742)
+.+++..+ .......++.+.++. -+.+-..-+.+..|+..++.+..+.+. + .+..++..+.+-|..++.+-
T Consensus 645 vr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds 724 (1005)
T KOG2274|consen 645 LRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDS 724 (1005)
T ss_pred HhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchh
Confidence 66655444 233444555555554 345678889999999999987433222 2 14577777777676554321
Q ss_pred HHHHHH-HHHHHHhhcccccCcCCCCchHHHHHHHHHHH-hhhCHHHHHHHHHHHHHHH
Q 004614 577 KDALLY-AIGSISTSCHKDISAEDPTTPFAIVDMVSSAC-RKKIKKYREAAFSCLEQVI 633 (742)
Q Consensus 577 ke~vl~-aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~-~~~~~~~R~~a~~~Lg~l~ 633 (742)
-..-+. -+..++.+.+.-+ .+...+|+++++..+ +-.+..+-+.-+..+..+.
T Consensus 725 ~a~~VG~lV~tLit~a~~el----~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 725 AAAFVGPLVLTLITHASSEL----GPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred HHHHHhHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 111111 1233455454433 244677777766544 4456777776666655544
No 114
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.71 E-value=0.02 Score=54.83 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=84.1
Q ss_pred hhhhhHhhHhhcCCchHH----HHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHH---HHH
Q 004614 477 AVIVPVIFISRFEDDKYV----SDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKL---GEI 549 (742)
Q Consensus 477 ~~vlP~l~~~~~d~~~~v----~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~L---a~~ 549 (742)
..++|..|.+..+.+..- +.-+.++.+. +.+..+-+.++.++.-+...|.+.+.++...+.++|-.| ...
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~---~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLER---GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 467888888876644332 3344455544 234568899999999999999999999999999999999 567
Q ss_pred hCcchhhhHHHHHHHHH----HhcC-------CCChhhHHHHHHHHHHHHhhcc
Q 004614 550 LGESLSNYHHVLLESIM----KEVP-------GRLWEGKDALLYAIGSISTSCH 592 (742)
Q Consensus 550 ~g~~~~~~~~~l~p~L~----~~l~-------~r~~~~ke~vl~aL~~l~~~~~ 592 (742)
.|+.+.|||.+++|.+- ++.+ .+..+.++.|-++|..+-+..+
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 88999999999999987 3311 1124567777788877766554
No 115
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.62 E-value=2.2 Score=50.02 Aligned_cols=156 Identities=8% Similarity=0.022 Sum_probs=121.1
Q ss_pred hhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCCh-hhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhC
Q 004614 473 SGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR-VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILG 551 (742)
Q Consensus 473 ~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~-~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g 551 (742)
+++...+.|.+...-+.....+|..+...+.-.....| ..+.+.++.++++++++|.=++-.+|-..-.++..+....+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 46677788887665554444566655544443333333 35679999999999999999999999999999999999888
Q ss_pred cchhhhHHHHHHHHHHhcCCCC---hhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHH
Q 004614 552 ESLSNYHHVLLESIMKEVPGRL---WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSC 628 (742)
Q Consensus 552 ~~~~~~~~~l~p~L~~~l~~r~---~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~ 628 (742)
.-...|+.++.|.+..--++.. -.+|+.+|+.|..+.+..+- +.--+|.+.++.++.+-+.|+...+|+.|..+
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~---~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT---KSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC---cccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 8888899999999987665543 45899999999999985542 12246789999999999999999999999887
Q ss_pred HHH
Q 004614 629 LEQ 631 (742)
Q Consensus 629 Lg~ 631 (742)
=+.
T Consensus 1019 R~~ 1021 (1030)
T KOG1967|consen 1019 RQN 1021 (1030)
T ss_pred hhh
Confidence 554
No 116
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.60 E-value=0.38 Score=51.73 Aligned_cols=215 Identities=19% Similarity=0.190 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHH
Q 004614 357 QLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQA 436 (742)
Q Consensus 357 ~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~ 436 (742)
.-++.+.+.+.+. ....|..++..++.+ -....++.+...+ .|.++.||..++.++|.+ -.+..+
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~----------~~~~av~~l~~~l-~d~~~~vr~~a~~aLg~~---~~~~a~ 107 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGEL----------GSEEAVPLLRELL-SDEDPRVRDAAADALGEL---GDPEAV 107 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhh----------chHHHHHHHHHHh-cCCCHHHHHHHHHHHHcc---CChhHH
Confidence 3556666666654 456666666665432 2345677777777 788999999999887766 334444
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCch------------HHHHHHHHHHHH
Q 004614 437 QKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDK------------YVSDLFEELWEE 504 (742)
Q Consensus 437 ~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~------------~v~~~~~~~~~~ 504 (742)
..+++.+.. .++...|..++..++.+..... ++.++....+... .++.........
T Consensus 108 ~~li~~l~~--d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~ 175 (335)
T COG1413 108 PPLVELLEN--DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE 175 (335)
T ss_pred HHHHHHHHc--CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence 444444332 2456678888888877732111 2222233333221 223222222221
Q ss_pred hcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 004614 505 NTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAI 584 (742)
Q Consensus 505 ~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL 584 (742)
...+...+.+...+.+....+|+.|+.++|.+.... ..+.+.+.+.+.+..|.+|...+.++
T Consensus 176 ----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 176 ----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred ----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 122344566677788889999999999999877532 35667888888888899999999888
Q ss_pred HHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 004614 585 GSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (742)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg 630 (742)
+.+- .+.-+..+...+.+.+..++..+...++
T Consensus 238 ~~~~--------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 238 GEIG--------------DEEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred cccC--------------cchhHHHHHHHHhccchHHHHHHHHHhc
Confidence 7543 2334455555565566666666666665
No 117
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.49 E-value=0.39 Score=49.50 Aligned_cols=54 Identities=24% Similarity=0.165 Sum_probs=47.7
Q ss_pred HhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHH
Q 004614 514 QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMK 567 (742)
Q Consensus 514 ~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~-~~~~~~~~l~p~L~~ 567 (742)
..|.+..++.+++.|.+.+..+|.-+.++|...+..+|. .+.+|..++|..|..
T Consensus 203 ~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 203 PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999999986 688899999988754
No 118
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.47 E-value=0.077 Score=50.71 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHHHHHHh
Q 004614 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDI-KETVRTAGDKLCRSVTSLTIR 232 (742)
Q Consensus 154 ~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~-~~~VR~aA~~~~~~l~~~~~r 232 (742)
.++.....+.+.+++++++.|-.++..+..+++.++++.+..+....+..++..++.. .+.+++++..++..+ +.+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l---~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL---FDL 98 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHH
Confidence 3445555577788898999999888889999998888888888888888888888753 445677774444444 322
Q ss_pred hhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhc
Q 004614 233 LCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESL 301 (742)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~l 301 (742)
.-....-..+...+.+..+++.++. +.++ ..+...++.+|..+.+.....++||..++-..++..+
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~--l~~~-~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQ--LLQD-SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHH--HHhc-cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2211111112233445556666653 2322 4667789999999999999999999888876666544
No 119
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.45 E-value=0.38 Score=52.93 Aligned_cols=117 Identities=12% Similarity=-0.048 Sum_probs=71.6
Q ss_pred HHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhh
Q 004614 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVI 479 (742)
Q Consensus 401 l~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~v 479 (742)
+..++..+ .|.++.||..++.++|.+- .+ .....+..++. .|+..|..+..+++.. -.+ -
T Consensus 88 ~~~L~~~L-~d~~~~vr~aaa~ALg~i~---~~----~a~~~L~~~L~~~~p~vR~aal~al~~r---~~~--------~ 148 (410)
T TIGR02270 88 LRSVLAVL-QAGPEGLCAGIQAALGWLG---GR----QAEPWLEPLLAASEPPGRAIGLAALGAH---RHD--------P 148 (410)
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHhcCC---ch----HHHHHHHHHhcCCChHHHHHHHHHHHhh---ccC--------h
Confidence 67777788 6888889999999998652 22 22333444443 3555665444333331 111 1
Q ss_pred hhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 004614 480 VPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKL 546 (742)
Q Consensus 480 lP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~L 546 (742)
.+.+.....|.+..|+.....+...+... +.++.+...+.|.+..||+.|+.+++.+
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 22333345588888988777776654322 1223344668899999999999888765
No 120
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.29 Score=56.51 Aligned_cols=223 Identities=13% Similarity=0.123 Sum_probs=146.2
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhcc
Q 004614 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (742)
Q Consensus 157 ~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~ 236 (742)
+-++..+..+.|+...+|-++..-+..+++.+..... -....++...+..+.|.++-|=-.|.+....| | +.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~L---c----ev 798 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSL---C----EV 798 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHH---H----Hh
Confidence 3467778888899999999999999999986542222 23346666677778888887766663333222 2 32
Q ss_pred ccCccchhHhHHHHHhHHHhhc--CCCC-ChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHH
Q 004614 237 TLTEISDARQSMDIVLPFLLAE--GILS-KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE 313 (742)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~--gl~~-~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~ 313 (742)
+ . +.++|.+.+. .-.. ...+.|-...+++++++...|+-...|...|+.+++....+++.
T Consensus 799 y------~----e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~------- 861 (982)
T KOG4653|consen 799 Y------P----EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDH------- 861 (982)
T ss_pred c------c----hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchH-------
Confidence 1 2 2345555441 0011 11355556779999999999999999999999999988774311
Q ss_pred HHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcC---hhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhc
Q 004614 314 LHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD---TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG 390 (742)
Q Consensus 314 ~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d---~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g 390 (742)
..|.+. +..++.|+...+ .+.+.+.+-.+....+.+.....|++|++++..+....|
T Consensus 862 --------------~~RaSS------~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 862 --------------EFRASS------LANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred --------------HHHHhH------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 122211 224555555443 446777777777777776667899999999999999999
Q ss_pred ccccccH----HHHHHHHhhhhhccccHHHHHHHHHHH
Q 004614 391 MDIKPYT----SMLLRLLFPVVKEEKSAAAKRAFASAC 424 (742)
Q Consensus 391 ~~l~p~~----~~ll~~Ll~~l~~D~~~~Vr~~~~~al 424 (742)
.++-|+. -.....+.+...+++...++.-+..++
T Consensus 922 ~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 922 EDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 8888854 344455555555556666665555444
No 121
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.43 E-value=0.55 Score=49.75 Aligned_cols=214 Identities=15% Similarity=0.134 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccC-CchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 004614 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR-KFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (742)
Q Consensus 153 ~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~-~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~ 231 (742)
+.+..-|.+.+..+.++....|+++..+|..++... ..+.+..+...++..+.+.+.-.+..=+.. +++.++-+++
T Consensus 39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~l---A~~~l~Ll~l 115 (309)
T PF05004_consen 39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQAL---AARALALLAL 115 (309)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHH---HHHHHHHHhh
Confidence 344455667788888888999999999999999653 456788889999999999887655422222 3444443344
Q ss_pred hhhccccCccchhHhHHHHHhHHHhhcCCCC--ChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHH
Q 004614 232 RLCDVTLTEISDARQSMDIVLPFLLAEGILS--KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGL 309 (742)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~--~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~ 309 (742)
.+-. .....++...+.|.|.. -+.+ ....+|..++.+|+-++-.++.+.. -+..+
T Consensus 116 tlg~-----g~~~~ei~~~~~~~L~~-~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~-----~~~~~------------ 172 (309)
T PF05004_consen 116 TLGA-----GEDSEEIFEELKPVLKR-ILTDSSASPKARAACLEALAICTFVGGSDEE-----ETEEL------------ 172 (309)
T ss_pred hcCC-----CccHHHHHHHHHHHHHH-HHhCCccchHHHHHHHHHHHHHHHhhcCChh-----HHHHH------------
Confidence 3221 11245677777777754 1222 3456777788888776654443311 11111
Q ss_pred HHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHh--h--cChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHH
Q 004614 310 NYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN--V--VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLL 385 (742)
Q Consensus 310 ~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~--~--~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L 385 (742)
|+.++.+.. + .|.. .| .+..........+|...++.|
T Consensus 173 ------------------------------~~~le~if~~~~~~~~~~-----~~----~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 173 ------------------------------MESLESIFLLSILKSDGN-----AP----VVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred ------------------------------HHHHHHHHHHHhcCcCCC-----cc----cccCCCccHHHHHHHHHHHHH
Confidence 111111000 0 0000 00 000000112334566666666
Q ss_pred HHHhcc-cccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCC
Q 004614 386 VQKIGM-DIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (742)
Q Consensus 386 ~~~~g~-~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~ 432 (742)
+...+. .+..++...++.+...| +..+..||.++..+|+-+++...
T Consensus 214 lt~~~~~~~~~~~~~~~~~l~~lL-~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 214 LTTLPDSKLEDLLEEALPALSELL-DSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh
Confidence 655543 35556677788888888 56788999999999988876554
No 122
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.38 E-value=0.026 Score=53.99 Aligned_cols=92 Identities=14% Similarity=0.085 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-hCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh---hc
Q 004614 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEI-LGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST---SC 591 (742)
Q Consensus 516 yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~-~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~---~~ 591 (742)
-.+..++++.++|....-.-|=-|..++-+|.+. .++.+.|.++++.+.|.++|+.|..++...+|.+|..++. ..
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3556778888999888888888999999999999 5668999999999999999999999999999999999944 44
Q ss_pred ccccCcCCCCchHHHHHHHH
Q 004614 592 HKDISAEDPTTPFAIVDMVS 611 (742)
Q Consensus 592 ~~~~~~~~~~~~~~iv~~l~ 611 (742)
++.+ .++.++|++.+.
T Consensus 115 G~aL----vPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEAL----VPYYRQLLPVLN 130 (183)
T ss_pred hHHH----HHHHHHHHHHHH
Confidence 4444 356777877766
No 123
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.35 E-value=0.54 Score=49.84 Aligned_cols=185 Identities=14% Similarity=0.049 Sum_probs=118.9
Q ss_pred hhhhhhHHhhHHHHHHH--hhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHH
Q 004614 89 LNSKRGAAFGFSKIAKQ--AGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVAD--PKRTIDEHLDLIFDDLLI 164 (742)
Q Consensus 89 w~~r~~A~~~l~~i~~~--~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d--~~~~i~~~~~~il~~Ll~ 164 (742)
-..|+++.-++-.++.. ..+.+..+...|+..+.++..=..+.=+..+.++...++-. +....++.|..+.+.|..
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 46778888888887654 36777778888999999988877776566667777766432 223456677777777777
Q ss_pred hhCCCC--hhHHHHHHHHHHHH--hccCCchhhh---hHHHHHHHHHHHHccCC--------cHHHHHHHHHHHHHHHHH
Q 004614 165 QSGSRL--WRSREASCLSLADI--IQGRKFDQVG---KHLRRIWTAAFRAMDDI--------KETVRTAGDKLCRSVTSL 229 (742)
Q Consensus 165 ~l~~~~--wrvR~aa~~Al~~L--~~~~~~~~l~---~~L~~i~~~l~~~l~D~--------~~~VR~aA~~~~~~l~~~ 229 (742)
.+.|.. ..+|.++|.||+-+ +.+...+.+. ..+..+|.....-.+.. .+.|..+|.....-|..
T Consensus 137 ~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt- 215 (309)
T PF05004_consen 137 ILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT- 215 (309)
T ss_pred HHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh-
Confidence 766653 46777776666654 4455555665 66777776654322222 24566666544433322
Q ss_pred HHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcC
Q 004614 230 TIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG 283 (742)
Q Consensus 230 ~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g 283 (742)
.++.. .....+...+|.|... |.+++.+||..|.++|.-|.+...
T Consensus 216 ---~~~~~-----~~~~~~~~~~~~l~~l-L~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 216 ---TLPDS-----KLEDLLEEALPALSEL-LDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred ---cCCHH-----HHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhh
Confidence 22211 1334566678877752 556788999999999988877654
No 124
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.27 E-value=0.081 Score=50.59 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=88.1
Q ss_pred chhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHhccC
Q 004614 111 KPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP-KRTIDEHLDLIFDDLLIQSGSRLW-RSREASCLSLADIIQGR 188 (742)
Q Consensus 111 ~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~-~~~i~~~~~~il~~Ll~~l~~~~w-rvR~aa~~Al~~L~~~~ 188 (742)
...+.+++-++..+..++++.-|.......+.++.+. .+.+.++....+..+++.+.+++. .+++++|.++..++.-.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3467788888888899999999999999999999765 567777888888888888877654 67999999999998621
Q ss_pred ---C---chhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 004614 189 ---K---FDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (742)
Q Consensus 189 ---~---~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l 226 (742)
+ .+...|+++.+++.++..+++ +.+...+..++..+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 1 234578899999999888876 45555554444444
No 125
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.18 Score=57.13 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=84.2
Q ss_pred hHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhh----------------------------hhhHHHhhh-
Q 004614 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR----------------------------LLIPKLVRF- 124 (742)
Q Consensus 74 ~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~----------------------------~lip~L~~~- 124 (742)
+.+..+...+..-+--+-.||-+.|++-++=+..+..+|++. +.|.+|+.+
T Consensus 484 eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~a 563 (929)
T KOG2062|consen 484 EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVA 563 (929)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccc
Confidence 444444444432222345577777777665443333333321 566666665
Q ss_pred cCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHH
Q 004614 125 QYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAA 204 (742)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l 204 (742)
..|+|-.|||++.-..+.+..+.+.. .+.+++-|-. +-+++||.+++.|+|-.+.|.+...- +..+
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp~~----~~s~V~lLse---s~N~HVRyGaA~ALGIaCAGtG~~eA-------i~lL 629 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDPEQ----LPSTVSLLSE---SYNPHVRYGAAMALGIACAGTGLKEA-------INLL 629 (929)
T ss_pred ccccchHHHHHHHHHheeeEecChhh----chHHHHHHhh---hcChhhhhhHHHHHhhhhcCCCcHHH-------HHHH
Confidence 77999999999988887765443333 3333333333 34679999999999999998874432 2223
Q ss_pred HHHccCCcHHHHHHHHHHHH
Q 004614 205 FRAMDDIKETVRTAGDKLCR 224 (742)
Q Consensus 205 ~~~l~D~~~~VR~aA~~~~~ 224 (742)
.....|...-||+.|..+..
T Consensus 630 epl~~D~~~fVRQgAlIa~a 649 (929)
T KOG2062|consen 630 EPLTSDPVDFVRQGALIALA 649 (929)
T ss_pred hhhhcChHHHHHHHHHHHHH
Confidence 33367999999999955444
No 126
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=5.5 Score=49.59 Aligned_cols=167 Identities=14% Similarity=0.050 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHH
Q 004614 455 ISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWS 534 (742)
Q Consensus 455 ~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~ 534 (742)
...-+++..+.+.+++ .+..++|.+..-...+++.+|-...++.+.+.+.....+..-.+.+....+..+.|.+.+
T Consensus 240 ~~~he~i~~L~~~~p~----ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 240 IKYHELILELWRIAPQ----LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred hHHHHHHHHHHHhhHH----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence 3444667777666664 355678887655555666666655555555444322222223456777777888999999
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHH
Q 004614 535 SKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSAC 614 (742)
Q Consensus 535 vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~ 614 (742)
+|..+.....+.-..-+.... -..++-.+..+. -.+++|....-.++. |. +....-.+.+.+++.+..-+
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~--~~~~~~~l~~~~--~D~~~rir~~v~i~~----~~--v~~~~l~~~~~ll~~~~eR~ 385 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAK--ASTILLALRERD--LDEDVRVRTQVVIVA----CD--VMKFKLVYIPLLLKLVAERL 385 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhh--HHHHHHHHHhhc--CChhhhheeeEEEEE----ee--hhHhhhhhhHHHHHHHHHHH
Confidence 999998888877655322211 111222222122 123333222211111 10 00001123455888888889
Q ss_pred hhhCHHHHHHHHHHHHHHHHH
Q 004614 615 RKKIKKYREAAFSCLEQVIKA 635 (742)
Q Consensus 615 ~~~~~~~R~~a~~~Lg~l~~~ 635 (742)
+|+-..||..|+..|.++-+.
T Consensus 386 rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 386 RDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999998884
No 127
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.08 Score=54.22 Aligned_cols=167 Identities=15% Similarity=0.212 Sum_probs=107.6
Q ss_pred hhHHHhhhcCCCCHHHHHHH----HHHHHHhccC----------CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 004614 117 LIPKLVRFQYDPDKNVQDAM----AHIWKSLVAD----------PKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLA 182 (742)
Q Consensus 117 lip~L~~~~~Dp~~~VR~a~----~~iw~~lv~d----------~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~ 182 (742)
+.++=|+-+.||+..+.++. ..=|...+.. -+..+...+..++-.+.+.+.+.-.-|-.+||.+++
T Consensus 75 ~~sk~l~~fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~ 154 (334)
T KOG2933|consen 75 IVSKNLSPFDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLA 154 (334)
T ss_pred hhhcccCccCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 55555666677777777663 2334333321 123445556667777888888887788899999999
Q ss_pred HHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCC
Q 004614 183 DIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS 262 (742)
Q Consensus 183 ~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~ 262 (742)
++.+... +.+..-++.++..++.--.+.+.-||+.|.+++.+..+.. ....++..++|.+..
T Consensus 155 difs~ln-~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v------------tp~~~L~~L~~~~~~----- 216 (334)
T KOG2933|consen 155 DIFSSLN-NSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV------------TPQKLLRKLIPILQH----- 216 (334)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc------------ChHHHHHHHHHHHhh-----
Confidence 9988665 3444456666666666556778889999988887764321 144578888887532
Q ss_pred ChHHHHHHHHHHHHHHHHhcC--cccccchhhHHHHHHHhc
Q 004614 263 KVDSISKASIGVVMKLVKGAG--IAIRPHLSDLVSCMLESL 301 (742)
Q Consensus 263 ~~~~vr~~a~~~L~~la~~~g--~~l~p~lp~Lv~~Ll~~l 301 (742)
..+.+|..++.+....+...| ....+++-++++.+-+-+
T Consensus 217 ~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~ 257 (334)
T KOG2933|consen 217 SNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQG 257 (334)
T ss_pred hchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhh
Confidence 467888888888877776666 112244444444444333
No 128
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=3.9 Score=47.28 Aligned_cols=288 Identities=14% Similarity=0.113 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHH
Q 004614 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVV 275 (742)
Q Consensus 196 ~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L 275 (742)
....+++.+-+.+....++|--.|+++.-.+.....|.+. +..+.+-+++ .+...-+|-.|.-+|
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~----------pavs~Lq~fl-----ssp~~~lRfaAvRtL 306 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA----------PAVSVLQLFL-----SSPKVALRFAAVRTL 306 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc----------hHHHHHHHHh-----cCcHHHHHHHHHHHH
Confidence 3445566666667788888888887777666554444433 2334433433 345567888889999
Q ss_pred HHHHHhcCcccccchhhHHHH-HHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhH
Q 004614 276 MKLVKGAGIAIRPHLSDLVSC-MLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTES 354 (742)
Q Consensus 276 ~~la~~~g~~l~p~lp~Lv~~-Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~ 354 (742)
-++|..-. +.+..-.. |-.++++. -| +-.+-|+..+.+...++.
T Consensus 307 nkvAm~~P-----~~v~~cN~elE~lItd~------------------------Nr------sIat~AITtLLKTG~e~s 351 (865)
T KOG1078|consen 307 NKVAMKHP-----QAVTVCNLDLESLITDS------------------------NR------SIATLAITTLLKTGTESS 351 (865)
T ss_pred HHHHHhCC-----ccccccchhHHhhhccc------------------------cc------chhHHHHHHHHHhcchhH
Confidence 88886433 22111110 11111110 00 111223444444444444
Q ss_pred HhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHH
Q 004614 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (742)
Q Consensus 355 l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~ 434 (742)
...++..+..++.+ +...-++-.++.+..|+..++..-. -++.-|.+.|.++..-+-++....++..+++..++.
T Consensus 352 v~rLm~qI~~fv~d-isDeFKivvvdai~sLc~~fp~k~~----~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds 426 (865)
T KOG1078|consen 352 VDRLMKQISSFVSD-ISDEFKIVVVDAIRSLCLKFPRKHT----VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS 426 (865)
T ss_pred HHHHHHHHHHHHHh-ccccceEEeHHHHHHHHhhccHHHH----HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch
Confidence 44444444444432 3445566666667677766653221 223333334433344456667778887777766543
Q ss_pred ---HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChh
Q 004614 435 ---QAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV 511 (742)
Q Consensus 435 ---~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~ 511 (742)
.+..+++.+. |-+.+..+..++.-+.+-.|-. +-=...+.+++.-.+-++..||......+..+..+++
T Consensus 427 Ke~~L~~LCefIE-----Dce~~~i~~rILhlLG~EgP~a--~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~- 498 (865)
T KOG1078|consen 427 KERGLEHLCEFIE-----DCEFTQIAVRILHLLGKEGPKA--PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV- 498 (865)
T ss_pred hhHHHHHHHHHHH-----hccchHHHHHHHHHHhccCCCC--CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-
Confidence 3445544442 3334444555666555443311 1111122222222223455566655555555543322
Q ss_pred hHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Q 004614 512 TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEI 549 (742)
Q Consensus 512 ~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~ 549 (742)
.-.+.|..++.+++.|.+-.+|..|...+..+-..
T Consensus 499 ---~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 499 ---VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred ---CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 12456778888999999999999999988887743
No 129
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.16 Score=55.88 Aligned_cols=168 Identities=14% Similarity=0.157 Sum_probs=101.2
Q ss_pred cCCCcccccCCcccCCCCCCCcchHHHHHHHhhhc------------------CChhHHHHHHHHhccccchhhhhhHHh
Q 004614 36 LAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEM------------------GQPDLIYKFMDLANYQVSLNSKRGAAF 97 (742)
Q Consensus 36 ~~~~t~~f~~g~~~~~~~~~~~~tyk~l~~lA~~~------------------~~p~lv~~fm~l~~~~~~w~~r~~A~~ 97 (742)
+.++...++-|.++- +.+|..+..++...|++- |..++.+.++.=...+.+---|-+-+|
T Consensus 461 ~~geAa~~gMGl~mL--gt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~f 538 (926)
T COG5116 461 LLGEAAVYGMGLLML--GTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVF 538 (926)
T ss_pred hhhhhhhhccceeee--cCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHH
Confidence 334455677777653 456777777777777643 223333333331111212233445556
Q ss_pred hHHHHHHHhhhhhchhhhhhhHHHhhh-cCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 004614 98 GFSKIAKQAGDALKPHLRLLIPKLVRF-QYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREA 176 (742)
Q Consensus 98 ~l~~i~~~~~~~l~~~l~~lip~L~~~-~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~a 176 (742)
+++..+-|.+. ..++..|+.| ..|.|-.||||+.-..+.++-+.++.+ ..+++.|. .+.++.||.+
T Consensus 539 s~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l----v~tvelLs---~shN~hVR~g 605 (926)
T COG5116 539 SLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL----VGTVELLS---ESHNFHVRAG 605 (926)
T ss_pred HHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEecCcchh----hHHHHHhh---hccchhhhhh
Confidence 66655554432 2467777777 899999999999877777654432322 22233222 2457899999
Q ss_pred HHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Q 004614 177 SCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRS 225 (742)
Q Consensus 177 a~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~ 225 (742)
++.|+|-.+.|.+...-.+. +-+++.|...-||++|..+..-
T Consensus 606 ~AvaLGiacag~G~~~a~di-------L~~L~~D~~dfVRQ~AmIa~~m 647 (926)
T COG5116 606 VAVALGIACAGTGDKVATDI-------LEALMYDTNDFVRQSAMIAVGM 647 (926)
T ss_pred hHHHhhhhhcCCccHHHHHH-------HHHHhhCcHHHHHHHHHHHHHH
Confidence 99999999998874322222 2334789999999999655443
No 130
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.05 E-value=0.67 Score=47.51 Aligned_cols=147 Identities=11% Similarity=0.070 Sum_probs=97.1
Q ss_pred hHHHHHHHHhccccchhhhhhHHhhHHHHHHHh--hhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCC--HH
Q 004614 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA--GDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP--KR 149 (742)
Q Consensus 74 ~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~--~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~--~~ 149 (742)
+-+.+++.+.+.+.+...++-|.++++..+.-. .+.+.. ...++.+-....||++.||..+..+...+..+. +.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~--~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD--LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH--cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 445778887776666777888888888864422 222221 135666666689999999998888888776543 34
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 004614 150 TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (742)
Q Consensus 150 ~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~ 227 (742)
.++.|++.+++.+...-- +..++.++..+|.++.-. +....-+...++.+++.+....+.+|..+.+.+-.|+
T Consensus 90 ~Ik~~i~~Vc~~~~s~~l--ns~~Q~agLrlL~nLtv~---~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSSPL--NSEVQLAGLRLLTNLTVT---NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHccCCC---cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 677788888888777522 347888888888887422 2223333344555566677677788888866665553
No 131
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.88 E-value=4.5 Score=46.26 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 004614 152 DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (742)
Q Consensus 152 ~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~ 231 (742)
+..+..++..++.+..+++-.||.-+|.-++-++.... +.=..-+..+...+..-+-|..+.||..|..++..+..
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~--- 155 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG--- 155 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc---
Confidence 33788899999999999999999999999988877322 11122334555556666789999999999665554432
Q ss_pred hhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHH
Q 004614 232 RLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVV 275 (742)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L 275 (742)
++. + ..-++.+.+ -.+++ .++++|||..++..|
T Consensus 156 ---d~~--d--ee~~v~n~l-~~liq---nDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 156 ---DPK--D--EECPVVNLL-KDLIQ---NDPSDEVRRAALSNI 188 (892)
T ss_pred ---CCC--C--CcccHHHHH-HHHHh---cCCcHHHHHHHHHhh
Confidence 111 0 111244443 33333 457899999888776
No 132
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.87 E-value=2.1 Score=46.53 Aligned_cols=203 Identities=12% Similarity=0.164 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcC-----CchHHHHHHHHHHHHhcCCChh----hHHhhHHHHHH-H
Q 004614 454 QISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE-----DDKYVSDLFEELWEENTSGDRV----TLQLYLGEIVS-L 523 (742)
Q Consensus 454 r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d-----~~~~v~~~~~~~~~~~~~~~~~----~i~~yl~~il~-~ 523 (742)
+..+++.+.-++....+.|++|++.++..+...... ..+.+.....+.+...+.+... ..+++++.|+. +
T Consensus 113 K~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~V 192 (370)
T PF08506_consen 113 KAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKV 192 (370)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHh
Confidence 345566666666666777888888887766543211 1111211111222222222100 01234444443 2
Q ss_pred HHhhc----------------------c-CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc---CCCChhhH
Q 004614 524 ICEGI----------------------A-SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV---PGRLWEGK 577 (742)
Q Consensus 524 l~~~L----------------------~-~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l---~~r~~~~k 577 (742)
+..++ + +..-..|++|...|-.|++..+..+.+.+......+.+.+ ....|..|
T Consensus 193 I~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~K 272 (370)
T PF08506_consen 193 IFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSK 272 (370)
T ss_dssp HHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHH
T ss_pred ccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHH
Confidence 22222 2 2234567778899999999887765443333333333322 23469999
Q ss_pred HHHHHHHHHHHhhccc---ccCc--CCCCchHHHHHHHHHHHh---hhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHH
Q 004614 578 DALLYAIGSISTSCHK---DISA--EDPTTPFAIVDMVSSACR---KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLL 649 (742)
Q Consensus 578 e~vl~aL~~l~~~~~~---~~~~--~~~~~~~~iv~~l~~~~~---~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il 649 (742)
++++.-+++++.+... ++.. ..-++.+=+...+.-++. .+.+-.|..|++.+..+-..++.+.+..++..++
T Consensus 273 D~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~ 352 (370)
T PF08506_consen 273 DGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLV 352 (370)
T ss_dssp HHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 9999999999876632 2211 111111112222334444 4567899999999999998887656666666666
Q ss_pred HhhhcCc
Q 004614 650 FEMCGST 656 (742)
Q Consensus 650 ~~~~~~~ 656 (742)
..+..++
T Consensus 353 ~~L~~~~ 359 (370)
T PF08506_consen 353 NHLQSSS 359 (370)
T ss_dssp HHTTSS-
T ss_pred HHhCCCC
Confidence 6665543
No 133
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.85 E-value=3.4 Score=48.52 Aligned_cols=313 Identities=13% Similarity=0.161 Sum_probs=157.1
Q ss_pred hhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH--HHHHHHHhhCCCChhHHHHHHHHHHHHhccCCch--
Q 004614 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL--IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD-- 191 (742)
Q Consensus 116 ~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~--il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~-- 191 (742)
.++|+|.+.+..++..+++.+..+.--|..|+ .++..+-. ++|.|...+.+++ .|..++..|-.+-......
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~--~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDP--ELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSM 406 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH--HHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHH
Confidence 68999999999999999999999999998874 34444443 6777777777764 4455655555554321111
Q ss_pred -hhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHH-HHhHHHhhcCCCCChHHHHH
Q 004614 192 -QVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD-IVLPFLLAEGILSKVDSISK 269 (742)
Q Consensus 192 -~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~-~lLP~Ll~~gl~~~~~~vr~ 269 (742)
.....++.++..++ .-+.+.|..++..++.+++.. .| .++.+.+ ..++.|+.+++...+ .
T Consensus 407 f~~TdcIp~L~~~Ll---~~~~~~v~~eliaL~iNLa~~-~r----------naqlm~~g~gL~~L~~ra~~~~D----~ 468 (708)
T PF05804_consen 407 FAYTDCIPQLMQMLL---ENSEEEVQLELIALLINLALN-KR----------NAQLMCEGNGLQSLMKRALKTRD----P 468 (708)
T ss_pred HhhcchHHHHHHHHH---hCCCccccHHHHHHHHHHhcC-HH----------HHHHHHhcCcHHHHHHHHHhccc----H
Confidence 12233444444433 224444544443334333211 01 0111111 235666654333322 2
Q ss_pred HHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhh
Q 004614 270 ASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV 349 (742)
Q Consensus 270 ~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~ 349 (742)
..+..+-+|+...|+ .+.-+.+.+..|...+...+++.. ..++++.+...
T Consensus 469 lLlKlIRNiS~h~~~-~k~~f~~~i~~L~~~v~~~~~ee~-----------------------------~vE~LGiLaNL 518 (708)
T PF05804_consen 469 LLLKLIRNISQHDGP-LKELFVDFIGDLAKIVSSGDSEEF-----------------------------VVECLGILANL 518 (708)
T ss_pred HHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCCcHHH-----------------------------HHHHHHHHHhc
Confidence 234566666665543 222222233333334433222110 12333333221
Q ss_pred ----cChh-HHh--hHHHHHHHHHHccCCCc-hHhhHHHHHHHHHHHhcccccccH--HHHHHHHhhhhh--ccccHHHH
Q 004614 350 ----VDTE-SLD--QLVPHLARLVRSGIGLN-TRVGVASFISLLVQKIGMDIKPYT--SMLLRLLFPVVK--EEKSAAAK 417 (742)
Q Consensus 350 ----~d~~-~l~--~lvp~L~~~l~~~~~~~-~r~~a~~~l~~L~~~~g~~l~p~~--~~ll~~Ll~~l~--~D~~~~Vr 417 (742)
+|-+ .+. .++|.+.+.+..+...+ ...+++-+++.++.. ..-.+.+ ..+++.++..+. ++ +.+.-
T Consensus 519 ~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqe-DdE~V 595 (708)
T PF05804_consen 519 TIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQE-DDEIV 595 (708)
T ss_pred ccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCc-hHHHH
Confidence 1211 232 58999999997553333 233666666665532 1111221 134455555542 22 23444
Q ss_pred HHHHHHHHHHHhhCC--HHHH--HHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhc--------hhhhhhhhhhhhhHh
Q 004614 418 RAFASACASVLKYAT--PSQA--QKLIEETAALHI-DDKNSQISCAILLKSYSSVA--------SDVLSGYHAVIVPVI 483 (742)
Q Consensus 418 ~~~~~al~~L~~~~~--~~~~--~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~--------~~~~~~~~~~vlP~l 483 (742)
-+..-++.+++.+-. +..+ .....+++++.. .+...|..+-.++.-++.+- ..+|..|-..|+-.+
T Consensus 596 lQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v 674 (708)
T PF05804_consen 596 LQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMV 674 (708)
T ss_pred HHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444566777765522 1111 234556666653 45677887777777775443 345666666666654
No 134
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=5 Score=46.15 Aligned_cols=344 Identities=13% Similarity=0.175 Sum_probs=170.7
Q ss_pred hhhchhhhhhhHHHhhhcC-CCC-HHHHHH--H----HHHHHHhccCCHHHHHHHHHH-HHHHHHHhhCCCChhHHHHHH
Q 004614 108 DALKPHLRLLIPKLVRFQY-DPD-KNVQDA--M----AHIWKSLVADPKRTIDEHLDL-IFDDLLIQSGSRLWRSREASC 178 (742)
Q Consensus 108 ~~l~~~l~~lip~L~~~~~-Dp~-~~VR~a--~----~~iw~~lv~d~~~~i~~~~~~-il~~Ll~~l~~~~wrvR~aa~ 178 (742)
+.+.+-|.-+..-|=++-- ++| .+.|++ + .+|.+.+..+. ..+..+.. |++.+...+.++---.|.-||
T Consensus 404 ~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~s--p~an~me~fiv~hv~P~f~s~ygfL~Srac 481 (970)
T COG5656 404 ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMS--PAANVMEYFIVNHVIPAFRSNYGFLKSRAC 481 (970)
T ss_pred hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCc--hHHHHHHHHHHHHhhHhhcCcccchHHHHH
Confidence 3466666655555533322 344 344443 2 33333222222 23333332 444455556666555677788
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhc
Q 004614 179 LSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE 258 (742)
Q Consensus 179 ~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~ 258 (742)
.-+..+-+.-+ -...+.+++......+.+.+--||-.|+-++..+.... . ..+.+...+|..+++
T Consensus 482 e~is~~eeDfk---d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~----q--------~h~k~sahVp~tmek 546 (970)
T COG5656 482 EFISTIEEDFK---DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE----Q--------SHEKFSAHVPETMEK 546 (970)
T ss_pred HHHHHHHHhcc---cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch----h--------hhHHHHhhhhHHHHH
Confidence 87777622222 22456678888888889999999999977777664211 1 222333334443331
Q ss_pred --CCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhccC
Q 004614 259 --GILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKG 336 (742)
Q Consensus 259 --gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~~ 336 (742)
.|.++- ++ ...-.++-.+++...+++.||.|+|+..|.+.+- .....+.++........|+...++
T Consensus 547 LLsLSn~f-ei-D~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFl-------kiaq~l~ens~d~~s~vDDKqmaa--- 614 (970)
T COG5656 547 LLSLSNTF-EI-DPLSMVMESFVEYFSEELSPFAPELAGSLVRQFL-------KIAQSLLENSSDTSSVVDDKQMAA--- 614 (970)
T ss_pred HHHhcccc-cc-hHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHH-------HHHHHHHcCCccccccccHHHHHH---
Confidence 122211 10 0123456677888899999999999988876321 111111111000001111111111
Q ss_pred CcHHHHHHHHHhhcChh--HHh----hHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhc
Q 004614 337 SPMWDTLDLCINVVDTE--SLD----QLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKE 410 (742)
Q Consensus 337 s~l~~al~~~~~~~d~~--~l~----~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~ 410 (742)
+-+..+++..+-.++.. +++ .+.|.+.=.+++.. ...-.+|++++-.. +-...++.|-.-.+.+.+.+.+ .
T Consensus 615 sGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i-~dfy~Ea~dildg~-tf~skeI~pimwgi~Ell~~~l-~ 691 (970)
T COG5656 615 SGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEI-SDFYQEALDILDGY-TFMSKEIEPIMWGIFELLLNLL-I 691 (970)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhhh-hHHHHHhhhhhhHHHHHHHhcc-c
Confidence 11233444443333321 222 24444443444321 11223555554322 2223456677777888888877 4
Q ss_pred cccH-HHHHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHhhc--CCc--hhHHHHHHHHHHHHhhchh-hhhhhhhhh
Q 004614 411 EKSA-AAKRAFASACASVLKYATPSQ-----AQKLIEETAALHI--DDK--NSQISCAILLKSYSSVASD-VLSGYHAVI 479 (742)
Q Consensus 411 D~~~-~Vr~~~~~al~~L~~~~~~~~-----~~~li~~l~~~~~--~d~--~~r~~a~~~l~~i~~~~~~-~~~~~~~~v 479 (742)
+... .-.+.++.++..++.+-+.+. ..+.+-.+..... ++. +.+..++.++..+.-...+ .+..|++.+
T Consensus 692 ~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plf 771 (970)
T COG5656 692 DEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLF 771 (970)
T ss_pred ccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHH
Confidence 4443 445777888888887764322 2223333333222 332 4567788888888766655 344555544
Q ss_pred hhHh
Q 004614 480 VPVI 483 (742)
Q Consensus 480 lP~l 483 (742)
+.++
T Consensus 772 i~va 775 (970)
T COG5656 772 ISVA 775 (970)
T ss_pred HHHH
Confidence 4443
No 135
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.75 E-value=0.17 Score=48.90 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=89.0
Q ss_pred hhhHHhhHHHHHHH-hhhhhchhhhhhhHHH------------hhhcCCCCHHHHHHHHHHHHHhccCCHHHH-------
Q 004614 92 KRGAAFGFSKIAKQ-AGDALKPHLRLLIPKL------------VRFQYDPDKNVQDAMAHIWKSLVADPKRTI------- 151 (742)
Q Consensus 92 r~~A~~~l~~i~~~-~~~~l~~~l~~lip~L------------~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i------- 151 (742)
|.+|...|..+++. -.+.+-.|.+.++|-- --..+||+++||.++.....+|....+..+
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~ 82 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESK 82 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcC
Confidence 45666666666666 3445555555555543 123579999999999998888876654321
Q ss_pred -------------HHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHhccCCchhhh-hHHHHHHHHHHHHccCCcHHHH
Q 004614 152 -------------DEHLDLIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKFDQVG-KHLRRIWTAAFRAMDDIKETVR 216 (742)
Q Consensus 152 -------------~~~~~~il~~Ll~~l~~~-~wrvR~aa~~Al~~L~~~~~~~~l~-~~L~~i~~~l~~~l~D~~~~VR 216 (742)
...+.++-..|+..+..+ +..+-...+.+++.|+++.+.+.+. +++..+|..+...+.+.+..||
T Consensus 83 ~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~ 162 (182)
T PF13251_consen 83 GPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVR 162 (182)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHH
Confidence 112223333344444332 4456667888999999998877664 5677888888888888999999
Q ss_pred HHHHHHHHHH
Q 004614 217 TAGDKLCRSV 226 (742)
Q Consensus 217 ~aA~~~~~~l 226 (742)
.++...+..+
T Consensus 163 v~~l~~~~~l 172 (182)
T PF13251_consen 163 VAALSCLGAL 172 (182)
T ss_pred HHHHHHHHHH
Confidence 9986655554
No 136
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.73 E-value=0.13 Score=48.94 Aligned_cols=127 Identities=7% Similarity=0.138 Sum_probs=77.6
Q ss_pred HhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhh-ccccHHH-------------HHHH
Q 004614 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK-EEKSAAA-------------KRAF 420 (742)
Q Consensus 355 l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~-~D~~~~V-------------r~~~ 420 (742)
-++|++.|.++++++..+..|.++.++++.| .++.||.-+....-...-. .+.+... .+.|
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGil-----GALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGIL-----GALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-----cccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHH
Confidence 3789999999999986788999999999988 7888886653332221110 0000000 1111
Q ss_pred --HHHHHHHHhhCCHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHH
Q 004614 421 --ASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLF 498 (742)
Q Consensus 421 --~~al~~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~ 498 (742)
+.++..|++...|..+. ..+..+.+++..+.+..+....+|+++++|.++......+...++.+
T Consensus 83 y~~vvi~~L~~iL~D~sLs--------------~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~ 148 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLS--------------SHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFY 148 (160)
T ss_pred HHHHHHHHHHHHHHhhhhH--------------HHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHH
Confidence 22333343333333332 22335557777777777777789999999998877665555666544
Q ss_pred HH
Q 004614 499 EE 500 (742)
Q Consensus 499 ~~ 500 (742)
..
T Consensus 149 ~~ 150 (160)
T PF11865_consen 149 FQ 150 (160)
T ss_pred HH
Confidence 33
No 137
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.72 E-value=0.54 Score=52.22 Aligned_cols=232 Identities=12% Similarity=0.125 Sum_probs=125.7
Q ss_pred ccccccHHHHHHHHhhhhhcc---ccHHHHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHhh----c--CCchhHHHHH
Q 004614 391 MDIKPYTSMLLRLLFPVVKEE---KSAAAKRAFASACASVLKYATPS---QAQKLIEETAALH----I--DDKNSQISCA 458 (742)
Q Consensus 391 ~~l~p~~~~ll~~Ll~~l~~D---~~~~Vr~~~~~al~~L~~~~~~~---~~~~li~~l~~~~----~--~d~~~r~~a~ 458 (742)
.++.|++..++..|+..+..+ +|+-+ +.++-+++-...++ ....+++++.+.. . +++.--....
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeyl----Mk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylF 93 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYL----MKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLF 93 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHH----HHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHH
Confidence 578899999999999999532 24444 44444444444432 2334444444333 2 2333334444
Q ss_pred HHHHHHHhh----chhhhhhhhhhhhhHhhHhhc-C---CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccC
Q 004614 459 ILLKSYSSV----ASDVLSGYHAVIVPVIFISRF-E---DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS 530 (742)
Q Consensus 459 ~~l~~i~~~----~~~~~~~~~~~vlP~l~~~~~-d---~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~ 530 (742)
+.++.+.++ .++....+-+.++|.+..-.. | =.++|=+++..+.+... + ..+.+....+++.++ ..
T Consensus 94 Esi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~-~--~~~p~~y~~L~~~Ll---~p 167 (435)
T PF03378_consen 94 ESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP-S--SPLPDAYKQLFPPLL---SP 167 (435)
T ss_dssp HHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-----S--TTTGGGHHHHT---SG
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C--CCCcHHHHHHHHHHc---Cc
Confidence 555555554 334445667777777644332 3 23445555556655533 1 234444444544433 33
Q ss_pred CCHHHH---HHHHHHHHHHHHHhCcchh--hhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHH
Q 004614 531 SSWSSK---RKSAKAICKLGEILGESLS--NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFA 605 (742)
Q Consensus 531 ~sw~vR---~~Aa~~lg~La~~~g~~~~--~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~ 605 (742)
.-|+.| .+..+.|....++.+..+. .++..++....+-+.+|.-+ ...+.=|..++..++... ..++.++
T Consensus 168 ~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~---l~~yl~~ 242 (435)
T PF03378_consen 168 ALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEA---LEPYLKQ 242 (435)
T ss_dssp GGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHH---HGGGHHH
T ss_pred chhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHH---HHHHHHH
Confidence 345432 4556677777777766553 46788999888888877633 334555666666665422 1367899
Q ss_pred HHHHHHHHHh-hhCHHHHHHHHHHHHHHHHHcC
Q 004614 606 IVDMVSSACR-KKIKKYREAAFSCLEQVIKAFR 637 (742)
Q Consensus 606 iv~~l~~~~~-~~~~~~R~~a~~~Lg~l~~~~~ 637 (742)
|+..+.+-+. .+..++++.-+.-++.++...+
T Consensus 243 I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g 275 (435)
T PF03378_consen 243 IFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYG 275 (435)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcC
Confidence 9998776654 4677888777777776666554
No 138
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.11 Score=55.35 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=97.3
Q ss_pred hhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchh
Q 004614 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ 192 (742)
Q Consensus 113 ~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~ 192 (742)
++..+++++ .+.|..||+.+..=.+.+...-+..+..|+.++++.+...+.|.+.-||.+.-..+-.++.....++
T Consensus 59 tlkeLl~ql----kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 59 TLKELLSQL----KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred cHHHHHhhh----cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 466788887 9999999999977777766655577888999999999999999999999999999988888777678
Q ss_pred hhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 004614 193 VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSL 229 (742)
Q Consensus 193 l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~ 229 (742)
++|+..-+++.+..+|..+.+.||.-+.+.+.-+...
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~ 171 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLER 171 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999987766665443
No 139
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=1.3 Score=46.74 Aligned_cols=131 Identities=14% Similarity=0.132 Sum_probs=85.6
Q ss_pred cccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH-HHHHHH
Q 004614 85 YQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL-IFDDLL 163 (742)
Q Consensus 85 ~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~-il~~Ll 163 (742)
++.....+++|+.-|.-.++...-..+=.=...++.|+.|..++++.||..+..+.+..+.|-|+...+.+.. -++.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3445678888887777777655322211112344445559999999999999999999998877777665542 566666
Q ss_pred HhhCCC-ChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHH
Q 004614 164 IQSGSR-LWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETV 215 (742)
Q Consensus 164 ~~l~~~-~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~V 215 (742)
..++.. .-++|..|..|+..++....+-.-.-.-..=|..+..+|++....|
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~ 225 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSV 225 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcch
Confidence 666433 4488999999999999876532211111222566777777643333
No 140
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=6 Score=45.84 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=102.0
Q ss_pred hhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHhccC--Cchh
Q 004614 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR-LWRSREASCLSLADIIQGR--KFDQ 192 (742)
Q Consensus 116 ~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~-~wrvR~aa~~Al~~L~~~~--~~~~ 192 (742)
+++|-+= --.+..-.+||-+.-+.+.-++- +.-++--+.+...+++.+.|. +--||-++..++.-.++.- +.+.
T Consensus 488 ~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 488 ALLPELA-NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred hhCHHhh-hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh
Confidence 5777762 11223345677766665555531 223344444555566667776 5678989988888888753 4568
Q ss_pred hhhHHHHHHHHHHHHccCCcH-HHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHH
Q 004614 193 VGKHLRRIWTAAFRAMDDIKE-TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKAS 271 (742)
Q Consensus 193 l~~~L~~i~~~l~~~l~D~~~-~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a 271 (742)
+.||++.+|..+|+.+....+ ..|... +..++.+..|.-+ ... .... .+-..+|.|-+. ....+-+|...
T Consensus 565 Flp~lenlf~~lfkll~~~~e~Dtk~~V---L~~ls~lI~r~~e-~I~--P~~~-~ivq~lp~LWe~--s~~e~lLr~al 635 (978)
T KOG1993|consen 565 FLPYLENLFVLLFKLLKAVEECDTKTSV---LNLLSTLIERVSE-HIA--PYAS-TIVQYLPLLWEE--SEEEPLLRCAL 635 (978)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHH-hhh--HHHH-HHHHHHHHHHhh--hccCcHHHHHH
Confidence 999999999999998763222 122222 3333333333221 100 0011 223346665542 22456788888
Q ss_pred HHHHHHHHHhcCcccccchhhHHHHHHHhc
Q 004614 272 IGVVMKLVKGAGIAIRPHLSDLVSCMLESL 301 (742)
Q Consensus 272 ~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~l 301 (742)
+.++-+++...|..=.++.|-+.|.+--..
T Consensus 636 L~~L~~lV~alg~qS~~~~~fL~pVIel~~ 665 (978)
T KOG1993|consen 636 LATLRNLVNALGAQSFEFYPFLYPVIELST 665 (978)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHhc
Confidence 999999999999775566666666554333
No 141
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.58 E-value=2.4 Score=44.71 Aligned_cols=156 Identities=14% Similarity=0.107 Sum_probs=108.5
Q ss_pred hhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhC
Q 004614 472 LSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILG 551 (742)
Q Consensus 472 ~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g 551 (742)
+...+..+.|-+|-.+....-.||+.+.++.+.+.-..+..+++.++.++--++.+++|.+.+....+...+..+...+|
T Consensus 91 L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 91 LAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred HHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 44444555555544444444578888888888865454558899999999999999999999999999999999999998
Q ss_pred cchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccc-c--Cc-----CCCCchHHHHHHHHHHHhhhCHHHHH
Q 004614 552 ESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD-I--SA-----EDPTTPFAIVDMVSSACRKKIKKYRE 623 (742)
Q Consensus 552 ~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~-~--~~-----~~~~~~~~iv~~l~~~~~~~~~~~R~ 623 (742)
..+ ++..+|-.++. +...|..++.-+..-..+.... . .. -..+-..-+++++...+.|++.-|++
T Consensus 171 ~~~--F~~~lwl~ii~-----sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR 243 (307)
T PF04118_consen 171 DKY--FWQCLWLCIIT-----SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQR 243 (307)
T ss_pred hhH--HHHHHHHHHhc-----CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHH
Confidence 874 68888888873 3456666665554433322200 0 00 01233566888999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 004614 624 AAFSCLEQVIKAFR 637 (742)
Q Consensus 624 ~a~~~Lg~l~~~~~ 637 (742)
.++..| +..+|
T Consensus 244 ~~LDlL---l~~~P 254 (307)
T PF04118_consen 244 GFLDLL---LSHFP 254 (307)
T ss_pred HHHHHH---HHhCC
Confidence 887665 44554
No 142
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.52 E-value=0.75 Score=52.01 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=71.2
Q ss_pred CchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcC-C
Q 004614 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID-D 450 (742)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~-d 450 (742)
...|.-++++|..+. ..|-...+.-+.+++..+ +|.+..||+.+..++..+|+-. .+.+.+++.-|.+++.. |
T Consensus 36 ~k~K~Laaq~I~kff----k~FP~l~~~Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFF----KHFPDLQEEAINAQLDLC-EDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp HHHHHHHHHHHHHHH----CC-GGGHHHHHHHHHHHH-T-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHH-hcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhccc
Confidence 346667788775443 455556888999999999 6899999999999888888654 45677888888888864 4
Q ss_pred chhHHHHHHHHHHHHhhchh-hhhhhhhhhhhHhhHhhcCCchHHHHHHHHHH
Q 004614 451 KNSQISCAILLKSYSSVASD-VLSGYHAVIVPVIFISRFEDDKYVSDLFEELW 502 (742)
Q Consensus 451 ~~~r~~a~~~l~~i~~~~~~-~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~ 502 (742)
..+...+-..+.++.+.-+. .+...++++.+. ...++.+|+-.....
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFL 157 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHH
Confidence 45666666666666554432 233334444321 123455666444433
No 143
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.51 E-value=0.14 Score=49.43 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHH-----------H-HhhCCCChhHHHHHHHHHHHHhccCC--------
Q 004614 131 NVQDAMAHIWKSLVAD-PKRTIDEHLDLIFDDL-----------L-IQSGSRLWRSREASCLSLADIIQGRK-------- 189 (742)
Q Consensus 131 ~VR~a~~~iw~~lv~d-~~~~i~~~~~~il~~L-----------l-~~l~~~~wrvR~aa~~Al~~L~~~~~-------- 189 (742)
+||.++..+..+++.. +++.+-.|+..++|+- + -.+.|++.++|.+|+.++..+++|..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4899999999998876 6677777888888776 1 23468899999999999999998642
Q ss_pred -------chhhhhHHHHHH----HHHHHHccC-CcHHHHHHHHHHHHHHHHHHHhhhcccc-CccchhHhHHHHHhHHHh
Q 004614 190 -------FDQVGKHLRRIW----TAAFRAMDD-IKETVRTAGDKLCRSVTSLTIRLCDVTL-TEISDARQSMDIVLPFLL 256 (742)
Q Consensus 190 -------~~~l~~~L~~i~----~~l~~~l~D-~~~~VR~aA~~~~~~l~~~~~r~~~~~~-~~~~~~~~~l~~lLP~Ll 256 (742)
+..+..-+..++ ..+...++. .+..+-... +|.++-+. .. .|+. -...-..+.+..+.|++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~---lK~la~Lv-~~-tPY~rL~~~ll~~~v~~v~~~l~ 155 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL---LKCLAVLV-QA-TPYHRLPPGLLTEVVTQVRPLLR 155 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH---HHHHHHHH-cc-CChhhcCHhHHHHHHHHHHHHHh
Confidence 111222233333 333333432 233333333 33332211 11 1111 111123344555555543
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHhc
Q 004614 257 AEGILSKVDSISKASIGVVMKLVKGA 282 (742)
Q Consensus 257 ~~gl~~~~~~vr~~a~~~L~~la~~~ 282 (742)
+.+.++|..++.+++.+....
T Consensus 156 -----~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 156 -----HRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred -----cCCCcHHHHHHHHHHHHHcCC
Confidence 346788999999999887653
No 144
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.49 E-value=1.3 Score=58.99 Aligned_cols=180 Identities=12% Similarity=0.165 Sum_probs=119.4
Q ss_pred hhhHHHhhhcCCCCHHHHHHHHHHHHHhcc-------CC-HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcc
Q 004614 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVA-------DP-KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (742)
Q Consensus 116 ~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~-------d~-~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~ 187 (742)
-.++.|..++...|+.++.+...+.+.+-. ++ ....-..+..+++.++...-++.|..|.+.|.+|+-+++.
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 356666677778888888876665554331 11 1122335777888888888999999999999999999998
Q ss_pred CCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCcc-chhHhHHHHHhHHHhhcCCCCChHH
Q 004614 188 RKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEI-SDARQSMDIVLPFLLAEGILSKVDS 266 (742)
Q Consensus 188 ~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~-~~~~~~l~~lLP~Ll~~gl~~~~~~ 266 (742)
.+...+-.+...++..++.++.|-...+-......++....-..|.+-...... .......+.+-|+.. ++.+++..
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~--eL~npN~~ 1141 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVL--ELFNPNSD 1141 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHcCCchH
Confidence 886677888889999998888887666655444444433222222221111100 111223444445443 57788889
Q ss_pred HHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhc
Q 004614 267 ISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESL 301 (742)
Q Consensus 267 vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~l 301 (742)
||+++..+|..++...|.. +++++..+-+.+
T Consensus 1142 VR~~~~~~L~~i~~~s~~~----v~~L~~p~K~~l 1172 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKS----VVKLLEPFKDVL 1172 (3550)
T ss_pred HHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHH
Confidence 9999999999999887643 566666666666
No 145
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.49 E-value=3.6 Score=42.43 Aligned_cols=131 Identities=15% Similarity=0.056 Sum_probs=80.2
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHH-HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccC
Q 004614 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRI-WTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLT 239 (742)
Q Consensus 161 ~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i-~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~ 239 (742)
.|-..+++.++.+|..+...|+.+++..+.+.+...-.+. +.....-++ .++.++.+ ...+.++.+. ..+.
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D~~~~~~~-l~gl~~L~~~--~~~~---- 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-DHACVQPA-LKGLLALVKM--KNFS---- 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-cHhhHHHH-HHHHHHHHhC--cCCC----
Confidence 4556788999999999999999999988866665533333 333333444 44456655 4445444321 1111
Q ss_pred ccchhHhHHHHHhHHHhhc-CCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhcccc
Q 004614 240 EISDARQSMDIVLPFLLAE-GILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSL 304 (742)
Q Consensus 240 ~~~~~~~~l~~lLP~Ll~~-gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ 304 (742)
......++..+.+. ...+-....|....+.+..+.+.....+...-+..+..+++.+..-
T Consensus 75 -----~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gE 135 (262)
T PF14500_consen 75 -----PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGE 135 (262)
T ss_pred -----hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccC
Confidence 11222333333321 1222356789999999999988876666656667788888777643
No 146
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.47 E-value=7.3 Score=45.78 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=69.6
Q ss_pred hhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhH
Q 004614 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (742)
Q Consensus 117 lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~ 196 (742)
.++.+.-=++||||.+|-.+......+- +.+..+.+++.+.+.++|+...||+.|..|+..+.+-.. +.+..-
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l~~~~ 165 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DLYHEL 165 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hhhhcc
Confidence 4444555568999999998887665543 455667777778999999999999999999999986432 222221
Q ss_pred -HHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 004614 197 -LRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (742)
Q Consensus 197 -L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l 226 (742)
+..+.. ..+.|.+|.|-.+|..++..+
T Consensus 166 g~~~~l~---~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 166 GLIDILK---ELVADSDPIVIANALASLAEI 193 (757)
T ss_pred cHHHHHH---HHhhCCCchHHHHHHHHHHHh
Confidence 222222 236899999988885555443
No 147
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.44 E-value=0.053 Score=64.60 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=90.7
Q ss_pred HHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHH
Q 004614 102 IAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLW-RSREASCLS 180 (742)
Q Consensus 102 i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~w-rvR~aa~~A 180 (742)
++-..++.+.| +-+.+|+||.+.+.+++.||.++..+...+.+.. ..+.+..+++.++..+++-+- .-|+++-..
T Consensus 803 ~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~---~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~ 878 (1549)
T KOG0392|consen 803 LAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSA---TRETMATVINGFLPLLGDLDKFVRRQGADEL 878 (1549)
T ss_pred HHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhccchhhHhhhhhHHHH
Confidence 44455778888 8889999999999999999999999998877543 233333444444444444433 336677777
Q ss_pred HHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 004614 181 LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTS 228 (742)
Q Consensus 181 l~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~ 228 (742)
+.-+..... -.+.||..-+++.+++.|.|..++||.+|.+.+..+..
T Consensus 879 ~~~l~~~l~-~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 879 IELLDAVLM-VGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred HHHHHHhhc-ccccccceeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 766665443 56788999999999999999999999999888877754
No 148
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=4.2 Score=42.19 Aligned_cols=97 Identities=11% Similarity=0.102 Sum_probs=68.2
Q ss_pred CHHHHHH---HHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHH----HHH
Q 004614 129 DKNVQDA---MAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR----RIW 201 (742)
Q Consensus 129 ~~~VR~a---~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~----~i~ 201 (742)
|.+-|.. ...|...|.+- +.-....+.+|+.|..++-.++-.|+--+|.-++.+++.+........+. +|+
T Consensus 53 NenhrekttlcVscLERLfka--kegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeil 130 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKA--KEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEIL 130 (524)
T ss_pred cccccchhhhHHHHHHHHHhh--ccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHH
Confidence 3444555 45555555531 11122356788889999988888999999999999999887555544433 677
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHH
Q 004614 202 TAAFRAMDDIKETVRTAGDKLCRSVT 227 (742)
Q Consensus 202 ~~l~~~l~D~~~~VR~aA~~~~~~l~ 227 (742)
+.++......+.+|.+||.+.++.++
T Consensus 131 klildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 131 KLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 77777777788889999977776664
No 149
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.058 Score=59.10 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=96.8
Q ss_pred CcchHHHHHHHhhh---cCChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHH
Q 004614 56 KLSTYKELCNLANE---MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNV 132 (742)
Q Consensus 56 ~~~tyk~l~~lA~~---~~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~V 132 (742)
|+--|.-..++|.. -|+-..|-.+++.+.+...--.||+|..|+|-||-+-.+ .|...+.-| -..-|++|
T Consensus 530 s~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~----~lv~tvelL---s~shN~hV 602 (926)
T COG5116 530 SILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD----LLVGTVELL---SESHNFHV 602 (926)
T ss_pred HHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc----hhhHHHHHh---hhccchhh
Confidence 33334444444443 233467778888765544446899999999998754433 233344444 35569999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCc
Q 004614 133 QDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK 212 (742)
Q Consensus 133 R~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~ 212 (742)
|....-+.+..+.++. ++.--.+++.| +-|+.--||++||.|.+.++-.+. +++.|....|.....++..|.+
T Consensus 603 R~g~AvaLGiacag~G---~~~a~diL~~L---~~D~~dfVRQ~AmIa~~mIl~Q~n-~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 603 RAGVAVALGIACAGTG---DKVATDILEAL---MYDTNDFVRQSAMIAVGMILMQCN-PELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred hhhhHHHhhhhhcCCc---cHHHHHHHHHH---hhCcHHHHHHHHHHHHHHHHhhcC-cccChhHHHHHHHHHHHHhhhh
Confidence 9988777776665432 22223333333 335556899999999999998777 7999999999999999999887
Q ss_pred H
Q 004614 213 E 213 (742)
Q Consensus 213 ~ 213 (742)
+
T Consensus 676 e 676 (926)
T COG5116 676 E 676 (926)
T ss_pred H
Confidence 6
No 150
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=9.4 Score=44.87 Aligned_cols=113 Identities=13% Similarity=0.209 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccC-----CcHHHHHHHHHHHHHHHHHHHhhhccccCccchhH
Q 004614 171 WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD-----IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDAR 245 (742)
Q Consensus 171 wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D-----~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~ 245 (742)
|.+-+++|..+-.+.+..+ +...+. ++.+|+..-. .++..-..+..+..++..++ -+ ..
T Consensus 481 ~~~tEaci~~~~sva~~~~-~t~~~~----i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l---~e--------~P 544 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLG-ETESTW----IPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWL---GE--------HP 544 (982)
T ss_pred HHHHHHHHHHHHHHHhhcC-cchhHH----HHHHHHhccccccccCChhHHHHHHHHHHHHHHHH---hc--------CC
Confidence 8888999999888887665 334444 4455554433 24444444434444444443 12 23
Q ss_pred hHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhcc
Q 004614 246 QSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (742)
Q Consensus 246 ~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls 302 (742)
.+++..+|.|++ |+.++... ..+..++.++++.+...+.||+..++...-+.+.
T Consensus 545 ~~ln~sl~~L~~-~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~ 598 (982)
T KOG2022|consen 545 MYLNPSLPLLFQ-GLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVCYEVLN 598 (982)
T ss_pred cccCchHHHHHH-HhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhc
Confidence 477888999886 77543333 3456669999999999999999999888777764
No 151
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.97 E-value=0.3 Score=46.40 Aligned_cols=72 Identities=10% Similarity=0.097 Sum_probs=57.1
Q ss_pred HHHHHHHHhhccCCCHH-HHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh
Q 004614 518 GEIVSLICEGIASSSWS-SKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (742)
Q Consensus 518 ~~il~~l~~~L~~~sw~-vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~ 589 (742)
.-.+..+.+.|.|++-. .+.++..++-.+.+..|..-.+|+++++|.+++.++.....-||..+..|+.++.
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34566777788887754 4445668888888888877788999999999999986656889999999998875
No 152
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.96 E-value=0.86 Score=52.08 Aligned_cols=119 Identities=10% Similarity=0.041 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 004614 151 IDEHLDLIFDDLLIQSGSRLW-RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSL 229 (742)
Q Consensus 151 i~~~~~~il~~Ll~~l~~~~w-rvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~ 229 (742)
..+|-+.+++.|..-+.-... +.+---..=+.-|.+-.+.+++ ...|+|.+++.++|.+..+++.+.+.+.++.+.
T Consensus 343 ~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~---~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~ 419 (700)
T KOG2137|consen 343 QNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEV---KEKILPLLYRSLEDSDVQIQELALQILPTVAES 419 (700)
T ss_pred hhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHH---HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh
Confidence 344555566666555542221 2221111112223344444444 458889999999999999999987766666544
Q ss_pred HHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCc
Q 004614 230 TIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (742)
Q Consensus 230 ~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~ 284 (742)
+ | ...+-+.|+|-|.+-.+...+-.||..++.|++.+++.+..
T Consensus 420 i----D--------~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 420 I----D--------VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred c----c--------HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH
Confidence 3 2 44466778998864333446778999999999999987664
No 153
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.96 E-value=0.78 Score=49.40 Aligned_cols=88 Identities=8% Similarity=0.247 Sum_probs=65.6
Q ss_pred HHHHHhcCCChhhHHhhHHHHHHHHHhhc----------cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc
Q 004614 500 ELWEENTSGDRVTLQLYLGEIVSLICEGI----------ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV 569 (742)
Q Consensus 500 ~~~~~~~~~~~~~i~~yl~~il~~l~~~L----------~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l 569 (742)
.+...+..+..-.+.+|+-.+++.++.++ .+..|.+|.-||..++.+|.+++.......+.++-.|.+.+
T Consensus 239 ~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l 318 (343)
T cd08050 239 RMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKAL 318 (343)
T ss_pred HHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 44455566655578899999999999888 24679999999999999999998765555677888888888
Q ss_pred CC--CChhhHHHHHHHHHHH
Q 004614 570 PG--RLWEGKDALLYAIGSI 587 (742)
Q Consensus 570 ~~--r~~~~ke~vl~aL~~l 587 (742)
.+ +....+-+++.+|..+
T Consensus 319 ~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 319 LDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred cCCCCCcchhhHHHHHHHHh
Confidence 54 3344455566555554
No 154
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.94 E-value=0.26 Score=58.78 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=100.0
Q ss_pred hhhhhhHHHhhhc----CCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHhcc
Q 004614 113 HLRLLIPKLVRFQ----YDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQG 187 (742)
Q Consensus 113 ~l~~lip~L~~~~----~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~-~~~wrvR~aa~~Al~~L~~~ 187 (742)
.|.++.|.+.-.+ .-.+|..|.|+.-+..-++.=+.. +...-++.++..|. ++++++|..+..|+|||.-.
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 3556666666544 234689999988777776643333 34444555777775 78899999999999999755
Q ss_pred CCchhhhhHHHHHHH-HHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHH
Q 004614 188 RKFDQVGKHLRRIWT-AAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDS 266 (742)
Q Consensus 188 ~~~~~l~~~L~~i~~-~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~ 266 (742)
.+ .-+ +-|+ .+++-+.|..++||+.|...+..|.-. .... .+..+...- +.|.+++++
T Consensus 992 fp-nli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiK--------VKGql~eMA-----~cl~D~~~~ 1050 (1251)
T KOG0414|consen 992 FP-NLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIK--------VKGQLSEMA-----LCLEDPNAE 1050 (1251)
T ss_pred cc-ccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhH--------hcccHHHHH-----HHhcCCcHH
Confidence 43 233 3343 456678999999999996666554210 0110 111223211 235677889
Q ss_pred HHHHHHHHHHHHHHhcCcccccchhhHHHH
Q 004614 267 ISKASIGVVMKLVKGAGIAIRPHLSDLVSC 296 (742)
Q Consensus 267 vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~ 296 (742)
++..|=...-+|+++. ..|-.-+|+++.+
T Consensus 1051 IsdlAk~FF~Els~k~-n~iynlLPdil~~ 1079 (1251)
T KOG0414|consen 1051 ISDLAKSFFKELSSKG-NTIYNLLPDILSR 1079 (1251)
T ss_pred HHHHHHHHHHHhhhcc-cchhhhchHHHHh
Confidence 9988888888888776 4454555554443
No 155
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.83 E-value=2.9 Score=44.10 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=73.9
Q ss_pred hhhHHHh-hhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhh
Q 004614 116 LLIPKLV-RFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (742)
Q Consensus 116 ~lip~L~-~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~ 194 (742)
.++..|. .....+++.||+.+..|.+...-=.++...+|+..++..+ + ..+..+|..|+.++.|++-..+.+.+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~-~---~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL-Q---KDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH-H---hCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 4444433 3458888999999999998865433456677777766655 2 236799999999999999766544444
Q ss_pred hHH--------HHHHHHHHHHccCCcHHHHHHHHHHH
Q 004614 195 KHL--------RRIWTAAFRAMDDIKETVRTAGDKLC 223 (742)
Q Consensus 195 ~~L--------~~i~~~l~~~l~D~~~~VR~aA~~~~ 223 (742)
..- ..+...+.+.+++.++.+|..|++.+
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl 138 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGL 138 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333 46777788888888888999886544
No 156
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.70 E-value=1.3 Score=46.43 Aligned_cols=164 Identities=13% Similarity=0.097 Sum_probs=101.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchh---hhhH--HHHHHHHHHHHcc--
Q 004614 137 AHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ---VGKH--LRRIWTAAFRAMD-- 209 (742)
Q Consensus 137 ~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~---l~~~--L~~i~~~l~~~l~-- 209 (742)
.-.|-....-....+++|++-++|.++.-+.|.+..+|.-+|..+..+++..+... +..+ ..-+...++..+-
T Consensus 99 ~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~L 178 (282)
T PF10521_consen 99 VLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYL 178 (282)
T ss_pred HHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcC
Confidence 33454441223357899999999999999999999999999999999999776555 3322 1222222222222
Q ss_pred ------CCcHHHHHHHHHHHHHHHHHHHhhhccccCc-cchhHhHHHH-HhHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 004614 210 ------DIKETVRTAGDKLCRSVTSLTIRLCDVTLTE-ISDARQSMDI-VLPFLLAEGILSKVDSISKASIGVVMKLVKG 281 (742)
Q Consensus 210 ------D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~-~~~~~~~l~~-lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~ 281 (742)
|....+=.+|..++..+.+... ...... ...-.+.+.. ++.-+... ...+..+++.+.++.+..+++.
T Consensus 179 P~~tp~~~s~~Ll~~ay~~L~~L~~~~~---~~~~~~r~~~l~~~l~e~IL~~~~~~-~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 179 PPITPEDESLELLQAAYPALLSLLKTQE---NDDSNPRSTWLDKILREGILSSMEHE-SSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred CCCCCchhhHHHHHHHHHHHHHHHHhhc---cCCcccchHHHHHHHHHHHhhhceec-cccCchhHHHHHHHHHHHHHHH
Confidence 3444455566555555543321 111000 0001112222 33322211 1112588999999999999999
Q ss_pred cCcccccchhhHHHHHHHhcccc
Q 004614 282 AGIAIRPHLSDLVSCMLESLSSL 304 (742)
Q Consensus 282 ~g~~l~p~lp~Lv~~Ll~~ls~~ 304 (742)
.|.....|+..++|.+.+.+.+.
T Consensus 255 lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 255 LGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred hccHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999988753
No 157
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.67 E-value=0.97 Score=45.52 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=75.1
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHhhccccc
Q 004614 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL--WEGKDALLYAIGSISTSCHKDI 595 (742)
Q Consensus 518 ~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~--~~~ke~vl~aL~~l~~~~~~~~ 595 (742)
++-+..+.+.+.+.|.-.|..+|.++|.|-+. .-+|.|++.|.+.+ .-+|.+..+||+.+..
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------ 249 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------ 249 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC------
Confidence 45567788888888999999999999987653 46788888886654 4499999999998863
Q ss_pred CcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH
Q 004614 596 SAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (742)
Q Consensus 596 ~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~ 635 (742)
+.-++++.+-++|...-+|..+..+|..+-..
T Consensus 250 --------e~~~~vL~e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 250 --------EDCVEVLKEYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred --------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 56677777788888899999999999876543
No 158
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=11 Score=44.26 Aligned_cols=184 Identities=9% Similarity=0.080 Sum_probs=103.6
Q ss_pred hhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHhccCCc
Q 004614 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEH-LDLIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKF 190 (742)
Q Consensus 113 ~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~-~~~il~~Ll~~l~~~-~wrvR~aa~~Al~~L~~~~~~ 190 (742)
.+.+|+.-|- .-.||...+.... ....-|+-....++..+ ++.+++.|...++++ +...--.||.|+..+++..+.
T Consensus 168 k~kkLL~gL~-~~~Des~Qleal~-Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 168 KAKKLLQGLQ-AESDESQQLEALT-ELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHHhcc-ccCChHHHHHHHH-HHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 3445554442 2226666666443 33334432333445433 456666676666654 378899999999999997763
Q ss_pred h--hhhhHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHH
Q 004614 191 D--QVGKHLRRIWTAAFRAMDDIK-ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSI 267 (742)
Q Consensus 191 ~--~l~~~L~~i~~~l~~~l~D~~-~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~v 267 (742)
. .+..| ..+|.+..-|.-+. -.|.+.+.+++..+.+.=-+.|-. + ..+...|.+|= .. .-.+
T Consensus 246 S~a~vV~~--~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~-------A-G~l~a~LsylD---FF--Si~a 310 (1051)
T KOG0168|consen 246 SSAIVVDE--HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ-------A-GALSAVLSYLD---FF--SIHA 310 (1051)
T ss_pred hhheeecc--cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh-------c-ccHHHHHHHHH---HH--HHHH
Confidence 2 11111 24444444333332 236666666666664321111100 0 12334444431 11 2356
Q ss_pred HHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHH
Q 004614 268 SKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE 313 (742)
Q Consensus 268 r~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~ 313 (742)
|..|+.+..++|+....+=..|+-+-+|.|..+|+....+.+-+.+
T Consensus 311 QR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ 356 (1051)
T KOG0168|consen 311 QRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVC 356 (1051)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHH
Confidence 7889999999999987765667778999999999865555544433
No 159
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.46 E-value=0.11 Score=55.77 Aligned_cols=101 Identities=21% Similarity=0.306 Sum_probs=70.7
Q ss_pred chhhhhhhHHHhhhcCCC-------CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhh----------CCCChhH
Q 004614 111 KPHLRLLIPKLVRFQYDP-------DKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQS----------GSRLWRS 173 (742)
Q Consensus 111 ~~~l~~lip~L~~~~~Dp-------~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l----------~~~~wrv 173 (742)
++-+.+++|.+.+|..+. |-.+=..+..+..+|..|+.-.++.|+..+++.+++++ .+..|..
T Consensus 205 D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 205 DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 356777888877776653 33333445667778888887788999999999999887 2456999
Q ss_pred HHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCc
Q 004614 174 REASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK 212 (742)
Q Consensus 174 R~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~ 212 (742)
|+-|+..++.++...+ ..+..-.+.|...+.+.+-|.+
T Consensus 285 Rd~AA~ll~~i~~~f~-~~y~~l~~ri~~tl~k~l~d~~ 322 (343)
T cd08050 285 RDYAARLLAQICRKFS-TSYNTLQPRITRTLLKALLDPK 322 (343)
T ss_pred HHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHcCCC
Confidence 9999999999997655 2233334455555665555543
No 160
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.40 E-value=3.5 Score=44.84 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCc------------chhhh-HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccC
Q 004614 530 SSSWSSKRKSAKAICKLGEILGE------------SLSNY-HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS 596 (742)
Q Consensus 530 ~~sw~vR~~Aa~~lg~La~~~g~------------~~~~~-~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~ 596 (742)
+.+|+-|.+|...++.++.+... ++..+ -..++|-|. .-..+..=.|-.+++.+..+-.....
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--- 341 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--- 341 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---
Confidence 46899999999999999975421 23344 345667776 22223334688888888777665442
Q ss_pred cCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 004614 597 AEDPTTPFAIVDMVSSACRKKIKKYREAAFSCL 629 (742)
Q Consensus 597 ~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~L 629 (742)
+....+++.+++.+..++..|+.-|+.++
T Consensus 342 ----~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 342 ----EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp ----HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 34788999999999999999999888764
No 161
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.20 E-value=0.7 Score=43.91 Aligned_cols=123 Identities=4% Similarity=0.048 Sum_probs=87.0
Q ss_pred HHhhHHHHHHHHHhhcc------------------CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCh
Q 004614 513 LQLYLGEIVSLICEGIA------------------SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLW 574 (742)
Q Consensus 513 i~~yl~~il~~l~~~L~------------------~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~ 574 (742)
+.++++.+++.+..... |..-++|++|..++..+-..+...+ .+..++..+..++.+ ..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cH
Confidence 45677788887775552 4567899999999999999877765 367789999999998 88
Q ss_pred hhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhh--------CHHHHHHHHHHHHHHHHHcCC
Q 004614 575 EGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK--------IKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 575 ~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~--------~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
+.|.-...-+..++..++..+......+.+.+-+.+.+..+.+ ..+..++++.+...+-..+++
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~ 151 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPG 151 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 8999888888888887776665444556677777666554443 345677778888777666654
No 162
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.43 Score=50.88 Aligned_cols=135 Identities=17% Similarity=0.225 Sum_probs=105.8
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhcc
Q 004614 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (742)
Q Consensus 157 ~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~ 236 (742)
.-+.+|+..+..-+..||+-+...+-+++...+ ..+..++-.+++.+.....|.+..||.+...+.+.++... |..
T Consensus 58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p-~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~---~~e 133 (393)
T KOG2149|consen 58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKSHP-AELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPA---CKE 133 (393)
T ss_pred ccHHHHHhhhcCchHhhhHHHHHHHHHHHHhCh-HHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhc---chh
Confidence 356668888988899999999999999998854 6788899999999988888999999999988888764322 211
Q ss_pred ccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhcc
Q 004614 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (742)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls 302 (742)
+.......++|++.. ++....+++|.-++..+.-++..+++.+.-+...+++.+.+.++
T Consensus 134 ------~~sp~~~l~~~yi~~-AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 134 ------DQSPMVSLLMPYISS-AMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred ------hhcchHHHHHHHHHH-HHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 123467778888764 56667899999999999999999987776666666666665554
No 163
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.97 E-value=0.95 Score=46.40 Aligned_cols=149 Identities=16% Similarity=0.124 Sum_probs=94.1
Q ss_pred hhHHHhhhcC-CCCHHHHHHHHHHHHHhccCCHHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHhccC-Cchhh
Q 004614 117 LIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGR-KFDQV 193 (742)
Q Consensus 117 lip~L~~~~~-Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~-~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~-~~~~l 193 (742)
-+.+|+.++. ..+|.+++.+..+..-....+ ...+-.-+ ..++-+.+.+.+++.++|+.|+.|+.++.... ....+
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 3455555555 467889998877777665433 22222212 35555777788899999999999999986543 34567
Q ss_pred hhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHH
Q 004614 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIG 273 (742)
Q Consensus 194 ~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~ 273 (742)
+.|+.++...+.. ..-+..|+.++.+++..+. + .+ +...++...+|.++.. +.+.+..+|..++.
T Consensus 92 k~~i~~Vc~~~~s--~~lns~~Q~agLrlL~nLt---v--~~-------~~~~~l~~~i~~ll~L-L~~G~~~~k~~vLk 156 (254)
T PF04826_consen 92 KMYIPQVCEETVS--SPLNSEVQLAGLRLLTNLT---V--TN-------DYHHMLANYIPDLLSL-LSSGSEKTKVQVLK 156 (254)
T ss_pred HHHHHHHHHHHhc--CCCCCHHHHHHHHHHHccC---C--Cc-------chhhhHHhhHHHHHHH-HHcCChHHHHHHHH
Confidence 8888888776643 2345678888866655542 1 01 1223444445554431 23346778889999
Q ss_pred HHHHHHHh
Q 004614 274 VVMKLVKG 281 (742)
Q Consensus 274 ~L~~la~~ 281 (742)
+|..|++.
T Consensus 157 ~L~nLS~n 164 (254)
T PF04826_consen 157 VLVNLSEN 164 (254)
T ss_pred HHHHhccC
Confidence 99998865
No 164
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=17 Score=42.73 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=54.9
Q ss_pred chhhhHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHH------HHHHHHhhhCHHHHHHH
Q 004614 553 SLSNYHHVLLESIMKEVPG-RLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVD------MVSSACRKKIKKYREAA 625 (742)
Q Consensus 553 ~~~~~~~~l~p~L~~~l~~-r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~------~l~~~~~~~~~~~R~~a 625 (742)
.+..+...++|.|++.+.. -..++|-.+|.|+..++--.. ..+...+++ .+...+..++..+-..|
T Consensus 548 l~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~-------seli~slLk~~~vSS~lAG~lsskD~~vlVgA 620 (1051)
T KOG0168|consen 548 LLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSN-------SELIGSLLKNTNVSSHLAGMLSSKDLTVLVGA 620 (1051)
T ss_pred HHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCC-------HHHHHHHHhcchHHHHHHhhhhcCCCeeEeeh
Confidence 4566788999999999955 458899999999998875222 112222222 23334556677777788
Q ss_pred HHHHHHHHHHcCC
Q 004614 626 FSCLEQVIKAFRD 638 (742)
Q Consensus 626 ~~~Lg~l~~~~~~ 638 (742)
+.....+++.+++
T Consensus 621 LQvAEiLmeKlpd 633 (1051)
T KOG0168|consen 621 LQVAEILMEKLPD 633 (1051)
T ss_pred HHHHHHHHHHhHH
Confidence 8888888888874
No 165
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.18 Score=57.25 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=88.6
Q ss_pred hhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHH
Q 004614 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID 152 (742)
Q Consensus 73 p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~ 152 (742)
-..+-++++.+-+...--.||+|..|+|-|+-+..++ ++.++.-| -..-||+||..+.-+.+--+..+- .
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~----~~s~V~lL---ses~N~HVRyGaA~ALGIaCAGtG---~ 622 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ----LPSTVSLL---SESYNPHVRYGAAMALGIACAGTG---L 622 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh----chHHHHHH---hhhcChhhhhhHHHHHhhhhcCCC---c
Confidence 3566777777655444567899999999987655442 33444444 345699999998777776655432 1
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHH
Q 004614 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETV 215 (742)
Q Consensus 153 ~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~V 215 (742)
+---.+++ ..+.|+.-=||++||.|++.++-.+. ++..|....+-..+.++..|.++++
T Consensus 623 ~eAi~lLe---pl~~D~~~fVRQgAlIa~amIm~Q~t-~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 623 KEAINLLE---PLTSDPVDFVRQGALIALAMIMIQQT-EQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHHHHHh---hhhcChHHHHHHHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHhhhhhhHH
Confidence 11111222 22347777899999999999987665 7888888888888899899988754
No 166
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=24 Score=43.68 Aligned_cols=293 Identities=14% Similarity=0.115 Sum_probs=157.2
Q ss_pred HHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhh
Q 004614 247 SMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKL 326 (742)
Q Consensus 247 ~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~ 326 (742)
....++|.+.-.-..+..-++|...++++..+.+..|+-+..-++.+.+.+-.+........++. -+-..
T Consensus 838 s~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~i----------vrlgf 907 (1610)
T KOG1848|consen 838 SLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKI----------VRLGF 907 (1610)
T ss_pred hhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhH----------HHhhh
Confidence 34445554432112345568899999999999999997655445655555543322110000010 01122
Q ss_pred hHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHH---HH----hccccccc---
Q 004614 327 ENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV---QK----IGMDIKPY--- 396 (742)
Q Consensus 327 d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~---~~----~g~~l~p~--- 396 (742)
+..|+ ...++.+.++.+++..++..+....+...+.+..-.++..++.+. .+ .|.+-..|
T Consensus 908 ~~lrl----------IssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~ 977 (1610)
T KOG1848|consen 908 SCLRL----------ISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSV 977 (1610)
T ss_pred hhhhh----------hhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcch
Confidence 33332 234566677777777888888877776666676666666555442 22 11111100
Q ss_pred ------------H-H----HHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCC--------HHHHHHHHHHHHHhh----
Q 004614 397 ------------T-S----MLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT--------PSQAQKLIEETAALH---- 447 (742)
Q Consensus 397 ------------~-~----~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~--------~~~~~~li~~l~~~~---- 447 (742)
+ + -++..+.... +|.-.+||+.+++.+=+++..-+ +...-.++.++.+..
T Consensus 978 e~~~ss~~~~~~l~e~lwi~ll~~L~~~~-~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~ 1056 (1610)
T KOG1848|consen 978 EDLYSSMKSKEILPEVLWIMLLVHLADLC-EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN 1056 (1610)
T ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHh-ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc
Confidence 0 1 2333444444 57778999999988877665422 234556666665522
Q ss_pred ----c--CC-chhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHH
Q 004614 448 ----I--DD-KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEI 520 (742)
Q Consensus 448 ----~--~d-~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~i 520 (742)
. ++ +.+-..++.+++.|++..++.|+.+.. . .-|.++|++ +
T Consensus 1057 ~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~lln----l-------------n~f~~vwe~---------------l 1104 (1610)
T KOG1848|consen 1057 VSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLLN----L-------------NGFLDVWEE---------------L 1104 (1610)
T ss_pred hhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHHh----c-------------ccHHHHHHH---------------H
Confidence 1 11 223446678888887765554432221 0 113355654 3
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHH---hCc---chhh-------hHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 004614 521 VSLICEGIASSSWSSKRKSAKAICKLGEI---LGE---SLSN-------YHHVLLESIMKEVPGRLWEGKDALLYAIGSI 587 (742)
Q Consensus 521 l~~l~~~L~~~sw~vR~~Aa~~lg~La~~---~g~---~~~~-------~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l 587 (742)
++++.+.+.+.+.++.-+|.+++..+... .|. .+.. .+..+.+.+-++-..+.|+++.+++..|+..
T Consensus 1105 l~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~ 1184 (1610)
T KOG1848|consen 1105 LQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIES 1184 (1610)
T ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHH
Confidence 34444555666777777777777666532 222 1111 1333444443422233478888888888876
Q ss_pred Hhhcc
Q 004614 588 STSCH 592 (742)
Q Consensus 588 ~~~~~ 592 (742)
+....
T Consensus 1185 vqs~s 1189 (1610)
T KOG1848|consen 1185 VQSLS 1189 (1610)
T ss_pred HHHHH
Confidence 65443
No 167
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.57 E-value=23 Score=43.19 Aligned_cols=124 Identities=14% Similarity=0.190 Sum_probs=83.3
Q ss_pred HHHHhhhcCChhHHHHHHHH----hccccchhhhhhHHhhHHHHH-HHh-hhhhchh---hh-hhhHHHhhhcCCCCHHH
Q 004614 63 LCNLANEMGQPDLIYKFMDL----ANYQVSLNSKRGAAFGFSKIA-KQA-GDALKPH---LR-LLIPKLVRFQYDPDKNV 132 (742)
Q Consensus 63 l~~lA~~~~~p~lv~~fm~l----~~~~~~w~~r~~A~~~l~~i~-~~~-~~~l~~~---l~-~lip~L~~~~~Dp~~~V 132 (742)
|..||.-+ |.+..++|.+ .+.. ...-|.+-.-..+.+. +.. ++++++. ++ .++..|...++|-++.|
T Consensus 299 L~elS~~~--P~l~~~~l~~lv~lld~e-s~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~v 375 (1251)
T KOG0414|consen 299 LVELSERV--PKLMLRQLTLLVDLLDSE-SYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYV 375 (1251)
T ss_pred HHHHHHHh--HHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 44444444 3444444442 2222 2555666655666643 332 3344433 33 36667777889999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCc
Q 004614 133 QDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF 190 (742)
Q Consensus 133 R~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~ 190 (742)
|.-+.++|..|.... ......+..++...+..+.|++--||+.|..-+..++...++
T Consensus 376 RskVLqv~~~l~~~~-s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 376 RSKVLQVFRRLFQQH-SIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHHHHHHHHHcc-CCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 999999999988543 223445778888899999999999999999999999886653
No 168
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=93.50 E-value=18 Score=41.86 Aligned_cols=296 Identities=15% Similarity=0.174 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHccCCCchHhhHHHHHHHHH---HHhc---ccccccHHHHHHHHhhhhhcc------c----------c
Q 004614 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLV---QKIG---MDIKPYTSMLLRLLFPVVKEE------K----------S 413 (742)
Q Consensus 356 ~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~---~~~g---~~l~p~~~~ll~~Ll~~l~~D------~----------~ 413 (742)
-+.+|.+++.+.+..+ .+......|+.... ++.. ..-.-++.+++.++++.+..| . .
T Consensus 334 l~~vpyllq~l~~e~d-dit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f 412 (980)
T KOG2021|consen 334 LEIVPYLLQFLNNEFD-DITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFF 412 (980)
T ss_pred HHHHHHHHHHhcccch-hhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHH
Confidence 4588999998866422 22222333333322 2222 233446778888888777322 1 2
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHH-HHHhhc--CCchh--HHHHHHHHHHHHhhchh-hhh---------hhhhh
Q 004614 414 AAAKRAFASACASVLKYATPSQAQKLIEE-TAALHI--DDKNS--QISCAILLKSYSSVASD-VLS---------GYHAV 478 (742)
Q Consensus 414 ~~Vr~~~~~al~~L~~~~~~~~~~~li~~-l~~~~~--~d~~~--r~~a~~~l~~i~~~~~~-~~~---------~~~~~ 478 (742)
.++|+....=...+..+.| +.+...+.. +..... .++++ -..+...+..++...+. .+. ..+..
T Consensus 413 ~e~RkkLk~fqdti~~idp-sl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~ 491 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVVIDP-SLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFL 491 (980)
T ss_pred HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHH
Confidence 3567665444444443333 333222222 222111 12222 22334444555444321 111 12233
Q ss_pred hhhHhhHhh--cCCchHHHHHHHHHH---HHhcCCChhhHHhhHHHHHHHHH--hhccCCCHHHHHHHHHHHHHHHHHhC
Q 004614 479 IVPVIFISR--FEDDKYVSDLFEELW---EENTSGDRVTLQLYLGEIVSLIC--EGIASSSWSSKRKSAKAICKLGEILG 551 (742)
Q Consensus 479 vlP~l~~~~--~d~~~~v~~~~~~~~---~~~~~~~~~~i~~yl~~il~~l~--~~L~~~sw~vR~~Aa~~lg~La~~~g 551 (742)
.+|.+...- ..+.+.|.-.|-+.. +.+..-.+ .|.+-++..++ +++-+.+..||+.|.+.....++.+.
T Consensus 492 ~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~es----q~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk 567 (980)
T KOG2021|consen 492 NELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTES----QKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK 567 (980)
T ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcch----hhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH
Confidence 444432211 124445554444432 22212111 24444444433 34556788999999999999888777
Q ss_pred cchhhhHHHHHHHHHHhcC---------CC--------------------------------------------------
Q 004614 552 ESLSNYHHVLLESIMKEVP---------GR-------------------------------------------------- 572 (742)
Q Consensus 552 ~~~~~~~~~l~p~L~~~l~---------~r-------------------------------------------------- 572 (742)
..+-|+.+.++.-+..-|. ++
T Consensus 568 kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~ 647 (980)
T KOG2021|consen 568 KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLF 647 (980)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHH
Confidence 6666665555544433331 11
Q ss_pred -------ChhhH----HHHHHHHHHHHhhcccccCcCCC----CchHHHHHHHHHHHhh--hCHHHHHHHHHHHHHHHHH
Q 004614 573 -------LWEGK----DALLYAIGSISTSCHKDISAEDP----TTPFAIVDMVSSACRK--KIKKYREAAFSCLEQVIKA 635 (742)
Q Consensus 573 -------~~~~k----e~vl~aL~~l~~~~~~~~~~~~~----~~~~~iv~~l~~~~~~--~~~~~R~~a~~~Lg~l~~~ 635 (742)
..+++ ..++-|++.+.+|++....+... .....+.+.+...+.. +....|.+.-..+++++..
T Consensus 648 a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~ 727 (980)
T KOG2021|consen 648 AQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPI 727 (980)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHh
Confidence 00000 12333455555555433321100 0123333333333322 5678999999999999999
Q ss_pred cCCCchHHhHHHHHHhhhcCccc
Q 004614 636 FRDPKFFNIIFPLLFEMCGSTAL 658 (742)
Q Consensus 636 ~~~~~~~~~v~~il~~~~~~~~~ 658 (742)
++. ++.+.++..++.+..+.+.
T Consensus 728 lg~-~vlPfipklie~lL~s~d~ 749 (980)
T KOG2021|consen 728 LGN-KVLPFIPKLIELLLSSTDL 749 (980)
T ss_pred cch-hhhcchHHHHHHHHhcCCH
Confidence 964 6788888888888777554
No 169
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=20 Score=41.82 Aligned_cols=354 Identities=13% Similarity=0.127 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHc-----cCCcHHHHHHHHHHHHHHHHH-HHhhhccccCccchhH
Q 004614 172 RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM-----DDIKETVRTAGDKLCRSVTSL-TIRLCDVTLTEISDAR 245 (742)
Q Consensus 172 rvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l-----~D~~~~VR~aA~~~~~~l~~~-~~r~~~~~~~~~~~~~ 245 (742)
.+|-.|-.-+-++....+ +-+.|++.+.+....... .|-+.-+++-|.-+.-.++.. +-..++ ..
T Consensus 412 ~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~d--------F~ 482 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILD--------FD 482 (978)
T ss_pred ccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCC--------HH
Confidence 567777777777776665 567777777776666655 454555555443222222211 111111 22
Q ss_pred h-HHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHh-cCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcch
Q 004614 246 Q-SMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG-AGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQT 323 (742)
Q Consensus 246 ~-~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~-~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~ 323 (742)
+ .-+.++|-+-.. .....-+|.-....++.=+.. +..+++| .+-..+++++.+.++-++.
T Consensus 483 ~Wl~~~llpEl~~~--~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~---l~Y~a~lnLL~d~~D~vV~------------- 544 (978)
T KOG1993|consen 483 KWLQEALLPELAND--HGNSRIIRRRVAWILGQWVSVQQKLELKP---LLYCAFLNLLQDQNDLVVR------------- 544 (978)
T ss_pred HHHHHhhCHHhhhc--ccchhHHHHHHHHHHhhhhheechHhHHH---HHHHHHHHhcCccccceee-------------
Confidence 2 345567765421 112356677677777766552 2333332 3455666666654332221
Q ss_pred hhhhHHhhhhccCCcHHHHHHHHHhhc--ChhHHhh----HHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccH
Q 004614 324 EKLENLRISIAKGSPMWDTLDLCINVV--DTESLDQ----LVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT 397 (742)
Q Consensus 324 ~~~d~~r~~~~~~s~l~~al~~~~~~~--d~~~l~~----lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~ 397 (742)
+.. .+++...++.- .++.+-+ +.-.+.++++....-.+|....+.++.++.+.+..+.||.
T Consensus 545 -------Ltt------~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~ 611 (978)
T KOG1993|consen 545 -------LTT------ARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA 611 (978)
T ss_pred -------hHH------HHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 111 11222222211 1222322 3333334444433457888899999999999999999999
Q ss_pred HHHHHHHhhhhhc-cccHHHHHHHHHHHHHHHhhCCHHH--HHHHHHHHHHhhc--CCchh---HHHHHHHHHHHHhhch
Q 004614 398 SMLLRLLFPVVKE-EKSAAAKRAFASACASVLKYATPSQ--AQKLIEETAALHI--DDKNS---QISCAILLKSYSSVAS 469 (742)
Q Consensus 398 ~~ll~~Ll~~l~~-D~~~~Vr~~~~~al~~L~~~~~~~~--~~~li~~l~~~~~--~d~~~---r~~a~~~l~~i~~~~~ 469 (742)
..+++-+-..-+. ...+-.|-+...++..++...+.+. ...+.=.++++.. +.++. -....++|...-.+++
T Consensus 612 ~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~ 691 (978)
T KOG1993|consen 612 STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ 691 (978)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc
Confidence 9888776555522 1223445555666666666555432 2333333333321 11111 1234567776655543
Q ss_pred hhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHH--hcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 004614 470 DVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEE--NTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLG 547 (742)
Q Consensus 470 ~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~--~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La 547 (742)
. +.+-+-.+.|.+........+..+..+ .+... +..+ +.-+..|...|+..+.+.+.|-.-+--++..+.+..+.
T Consensus 692 ~-l~p~ll~L~p~l~~~iE~ste~L~t~l-~Ii~sYilLd~-~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili 768 (978)
T KOG1993|consen 692 K-LTPELLLLFPHLLYIIEQSTENLPTVL-MIISSYILLDN-TVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILI 768 (978)
T ss_pred c-cCHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2 222222333433322222233333322 11111 1222 23567788888888888887744444444555555555
Q ss_pred HHhCcchhh-hHHHHHHHHHHhc
Q 004614 548 EILGESLSN-YHHVLLESIMKEV 569 (742)
Q Consensus 548 ~~~g~~~~~-~~~~l~p~L~~~l 569 (742)
++.+ -+.+ +.+.++|.+.++.
T Consensus 769 ~t~~-il~~~~~~~~L~~lf~~I 790 (978)
T KOG1993|consen 769 KTNP-ILGSLLFSPLLSRLFLSI 790 (978)
T ss_pred hhhH-HHHhhhcchhhHHHHHHH
Confidence 4422 2222 3455666665555
No 170
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.11 E-value=0.22 Score=47.24 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHHHHc------------------cCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHH
Q 004614 193 VGKHLRRIWTAAFRAM------------------DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPF 254 (742)
Q Consensus 193 l~~~L~~i~~~l~~~l------------------~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~ 254 (742)
+.|+|.+++|.++.-. -|.--.+|++|.+.+.++...|...+ -+..++..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~------------~~~~~~~~ 70 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI------------DISEFLDR 70 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-------------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC------------CHHHHHHH
Confidence 4678888888887543 23445789999888888754321111 13334555
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhcc
Q 004614 255 LLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (742)
Q Consensus 255 Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls 302 (742)
+.. |+.+ +.++|..++..+.+++......+.++++.+++.|-..++
T Consensus 71 v~~-GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 71 VEA-GLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHH-TTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHh-hcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 543 8876 899999999999999999988889999999999988876
No 171
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.80 E-value=4.2 Score=47.36 Aligned_cols=153 Identities=15% Similarity=0.186 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHHhcc----CC----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHH
Q 004614 128 PDKNVQDAMAHIWKSLVA----DP----KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRR 199 (742)
Q Consensus 128 p~~~VR~a~~~iw~~lv~----d~----~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~ 199 (742)
+++.+|.++.-....++. +. +..++++.+.+...|-.....++-..+.....|||++-.....+.+.+|+.
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~- 487 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE- 487 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-
Confidence 466777776555555553 11 223466666766666666666666668888999998744333333333322
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004614 200 IWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLV 279 (742)
Q Consensus 200 i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la 279 (742)
.-.+....+|.+|..+++.++..+ ...+-+.++|++++. ..+.|+|-.|+..|+.-
T Consensus 488 -------~~~~~~~~iR~~Av~Alr~~a~~~-------------p~~v~~~l~~i~~n~---~e~~EvRiaA~~~lm~t- 543 (574)
T smart00638 488 -------GAEPLSTFIRLAAILALRNLAKRD-------------PRKVQEVLLPIYLNR---AEPPEVRMAAVLVLMET- 543 (574)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHHhC-------------chHHHHHHHHHHcCC---CCChHHHHHHHHHHHhc-
Confidence 123456789999977777654322 334667788988753 35789999998888642
Q ss_pred HhcCcccccchhhHHHHHHHhccc-cchHHHHHHH
Q 004614 280 KGAGIAIRPHLSDLVSCMLESLSS-LEDQGLNYIE 313 (742)
Q Consensus 280 ~~~g~~l~p~lp~Lv~~Ll~~ls~-~e~~~~~~~~ 313 (742)
.|- ..++..+.+.+.. ...++.+|+.
T Consensus 544 -------~P~-~~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 544 -------KPS-VALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred -------CCC-HHHHHHHHHHHhhcCcHHHHHHhH
Confidence 132 2345555555543 3346666654
No 172
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.77 E-value=7.1 Score=43.52 Aligned_cols=86 Identities=9% Similarity=0.215 Sum_probs=66.9
Q ss_pred HhcCCChhhHHhhHHHHHHHHHhhc----------cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC--
Q 004614 504 ENTSGDRVTLQLYLGEIVSLICEGI----------ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG-- 571 (742)
Q Consensus 504 ~~~~~~~~~i~~yl~~il~~l~~~L----------~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~-- 571 (742)
.+..+..-.+.+|+-++++-++.|+ .|..|.+|--||..+.-++..++.......+.++-.+.+.+.+
T Consensus 273 SLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 273 SLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK 352 (576)
T ss_pred HHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 3445544567899999999888887 3678999999999999999999987666677888889999854
Q ss_pred CChhhHHHHHHHHHHHHh
Q 004614 572 RLWEGKDALLYAIGSIST 589 (742)
Q Consensus 572 r~~~~ke~vl~aL~~l~~ 589 (742)
+.|.-.=+++..|.+|..
T Consensus 353 ~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 353 KPLSTHYGAIAGLSELGH 370 (576)
T ss_pred CCchhhhhHHHHHHHhhh
Confidence 457666666666666654
No 173
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.73 E-value=10 Score=43.79 Aligned_cols=113 Identities=8% Similarity=0.035 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHhhccc
Q 004614 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV-PGRLWEGKDALLYAIGSISTSCHK 593 (742)
Q Consensus 515 ~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l-~~r~~~~ke~vl~aL~~l~~~~~~ 593 (742)
...+.|++++...+++.+-.+...+...+..+++.+...+ .-+.++|.+.... +...-.+|..++.+++.+++.+..
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF--VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH--HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999886432 2456777776554 444577999999999999976643
Q ss_pred ccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHc
Q 004614 594 DISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (742)
Q Consensus 594 ~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~ 636 (742)
.. .-..+..+.++.+-.++.+..........++--.
T Consensus 463 ~~-------v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~ 498 (700)
T KOG2137|consen 463 AA-------VLDELLPILKCIKTRDPAIVMGFLRIYEALALII 498 (700)
T ss_pred HH-------hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhc
Confidence 21 2333444455554455555555555544444333
No 174
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.53 E-value=37 Score=42.78 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=86.2
Q ss_pred hcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHH--HHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHH
Q 004614 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV--QKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACAS 426 (742)
Q Consensus 349 ~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~--~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~ 426 (742)
+++....++++..+.++...+..+..|..+..++..++ ..|+ ...+..+.+-..+.+.+ +|..-+||+.++.++.-
T Consensus 1518 ~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l-~D~~i~vre~Aa~~Lsg 1595 (1710)
T KOG1851|consen 1518 WIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLL-NDDQIEVREEAAKCLSG 1595 (1710)
T ss_pred ccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHH-cchHHHHHHHHHHHHHH
Confidence 34444455666666654445556778888888876554 3455 45567888999999999 78878899999999988
Q ss_pred HHhhCCHHHHHHHHHHHHHhh---cCCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhH--hhcCCch
Q 004614 427 VLKYATPSQAQKLIEETAALH---IDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI--SRFEDDK 492 (742)
Q Consensus 427 L~~~~~~~~~~~li~~l~~~~---~~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~--~~~d~~~ 492 (742)
++.........+-..+..... ..|+..+..+...++++.-..|..+.. ++|-.+. ++++.++
T Consensus 1596 l~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~----wip~~L~~Ls~fa~e~ 1662 (1710)
T KOG1851|consen 1596 LLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPL----WIPKPLMNLSSFARES 1662 (1710)
T ss_pred HHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchh----hhHHHHHHHHhhcCCc
Confidence 876654333331111111111 134455567778888887777655444 5554433 4555444
No 175
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=92.48 E-value=12 Score=40.24 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhh
Q 004614 397 TSMLLRLLFPVVKEEKSAAAKRAFASACASVLK----YATPSQAQKLIEETAALH 447 (742)
Q Consensus 397 ~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~----~~~~~~~~~li~~l~~~~ 447 (742)
-+++++.+.+++ +|+.+.+|+.+..++|.++. ......+..+++.+.+.+
T Consensus 59 ~~~~~~~~~kGl-~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 59 PKKVVDAFKKGL-KDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred CHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 467888899999 78888899999999999987 333455667777777776
No 176
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=92.31 E-value=0.57 Score=39.88 Aligned_cols=59 Identities=7% Similarity=0.228 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHH
Q 004614 530 SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG--RLWEGKDALLYAIGSIS 588 (742)
Q Consensus 530 ~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~--r~~~~ke~vl~aL~~l~ 588 (742)
+.+|.+|.-||+.|+.++.+++.......+.++-.+.+.+.+ ++...+-+++.+|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 568999999999999999999876555567888889999864 45667777777777764
No 177
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=92.01 E-value=26 Score=39.90 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=83.0
Q ss_pred hHHHHHHHHHhhccCC--CHHHHHHHHHHH---HHHHHHhCcch----hhh-HHHHHHHHHHhc----CCCChhhHHHHH
Q 004614 516 YLGEIVSLICEGIASS--SWSSKRKSAKAI---CKLGEILGESL----SNY-HHVLLESIMKEV----PGRLWEGKDALL 581 (742)
Q Consensus 516 yl~~il~~l~~~L~~~--sw~vR~~Aa~~l---g~La~~~g~~~----~~~-~~~l~p~L~~~l----~~r~~~~ke~vl 581 (742)
..+.++.++..++.+. +.++|..+..-+ .......+..+ .++ +.++||.+...- ....-..|...-
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 4577888888888777 678888888888 66666666532 221 344455541100 111245799999
Q ss_pred HHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCC
Q 004614 582 YAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
+++|.++++.+..+.. --.++..+.+.+.+...++|.+.-.+|+.++.++..
T Consensus 396 e~lG~L~~~~p~l~~~-----d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFSK-----DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred HHHHHHHccCcccccc-----cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 9999999988865532 145666677777778999999999999999999975
No 178
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.89 E-value=2.1 Score=37.61 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=70.6
Q ss_pred hhchhhhhhhHHHhhhcCC----CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 004614 109 ALKPHLRLLIPKLVRFQYD----PDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADI 184 (742)
Q Consensus 109 ~l~~~l~~lip~L~~~~~D----p~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L 184 (742)
.+++++--++-++=...+| ....-|+.+......+++-.+..+....+.|+..|...+..+ ..|+.++.+-..+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 4555554444444333444 444455555555666665445677888888998888888776 7899999999999
Q ss_pred hccCCchhhhhHHHHHHHHHHHHc
Q 004614 185 IQGRKFDQVGKHLRRIWTAAFRAM 208 (742)
Q Consensus 185 ~~~~~~~~l~~~L~~i~~~l~~~l 208 (742)
++..+.+++.+.+++++..++...
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999998999999999998887654
No 179
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=91.62 E-value=17 Score=37.94 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=67.7
Q ss_pred CChhHHHHHH-HHHHHHhc-cCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhcccc----Cccc
Q 004614 169 RLWRSREASC-LSLADIIQ-GRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL----TEIS 242 (742)
Q Consensus 169 ~~wrvR~aa~-~Al~~L~~-~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~----~~~~ 242 (742)
+.|+...+.. ..+.-++. ....+.++.++.-++|.++..+||..+.+|..+..++..+..-+ .... ....
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~----~~~~~~~L~~tG 162 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKV----PAAEWDILRRTG 162 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhC----ChhhhHHHHHcC
Confidence 3677655332 44555555 66778899999999999999999999999999988777764322 1110 0001
Q ss_pred hhHhHHHHHhHHHhh-cCCCC--ChHHHHHHHHHHHHHHHHhc
Q 004614 243 DARQSMDIVLPFLLA-EGILS--KVDSISKASIGVVMKLVKGA 282 (742)
Q Consensus 243 ~~~~~l~~lLP~Ll~-~gl~~--~~~~vr~~a~~~L~~la~~~ 282 (742)
-.+-+-+.+.|.+.- -.+.. ++..+=..+..++..+++..
T Consensus 163 l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~ 205 (282)
T PF10521_consen 163 LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQ 205 (282)
T ss_pred hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhh
Confidence 122244455555541 01122 23445567788888887753
No 180
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=3.5 Score=42.64 Aligned_cols=125 Identities=16% Similarity=0.195 Sum_probs=88.9
Q ss_pred chhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhC
Q 004614 88 SLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSG 167 (742)
Q Consensus 88 ~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~ 167 (742)
+|-..--....+..+.+--.+.+.+.|.+++..+..-+..|...|-++++-+...+.+.-..-+.+-++.++..|+..-.
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~ 180 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKAS 180 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 48765555555555555456889999999999999999999999999999988888865444455556666666655544
Q ss_pred CCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHH
Q 004614 168 SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAG 219 (742)
Q Consensus 168 ~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA 219 (742)
..+-=+|+.|-.||..++....+..+.+.|.. . +....+.||..+
T Consensus 181 ~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~---~----~~~~n~r~r~~a 225 (334)
T KOG2933|consen 181 QDNRFVREDAEKALVAMVNHVTPQKLLRKLIP---I----LQHSNPRVRAKA 225 (334)
T ss_pred ccchHHHHHHHHHHHHHHhccChHHHHHHHHH---H----Hhhhchhhhhhh
Confidence 44456799999999999988876555443332 2 456666676655
No 181
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=91.50 E-value=1.9 Score=46.02 Aligned_cols=124 Identities=9% Similarity=0.172 Sum_probs=95.5
Q ss_pred hhhhhhHHhhHHH-HHHHhhhhhchhhhhhhHHHhhh----c---CCCCHHHHHHHHHHHHHhccCCHHHH----HHHHH
Q 004614 89 LNSKRGAAFGFSK-IAKQAGDALKPHLRLLIPKLVRF----Q---YDPDKNVQDAMAHIWKSLVADPKRTI----DEHLD 156 (742)
Q Consensus 89 w~~r~~A~~~l~~-i~~~~~~~l~~~l~~lip~L~~~----~---~Dp~~~VR~a~~~iw~~lv~d~~~~i----~~~~~ 156 (742)
...|..-+..+.+ |..+.++.+.++++.++..+|.. . +...|..|...-...++++......+ .+.+.
T Consensus 85 p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~ 164 (319)
T PF08767_consen 85 PDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK 164 (319)
T ss_dssp GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH
T ss_pred ccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH
Confidence 5678888877666 88888888899998888887752 2 23579999988777777665422222 66788
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCc-------hhhhhHHHHHHHHHHHHccCCc
Q 004614 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF-------DQVGKHLRRIWTAAFRAMDDIK 212 (742)
Q Consensus 157 ~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~-------~~l~~~L~~i~~~l~~~l~D~~ 212 (742)
.+++.+.-++.+.+..+-+.++.++.+++..... ..+..|+..++..++.++.|..
T Consensus 165 ~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 165 LVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 9999999999999999999999999999975443 3577888999999999988754
No 182
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.45 E-value=17 Score=40.89 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=76.9
Q ss_pred HhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccc
Q 004614 514 QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (742)
Q Consensus 514 ~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~ 593 (742)
..+++.++..+++++.+++-+||..+...|..+....++-=...+..+...|.+++-+|+..+|.+++.+|.-+=+-..+
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 35677788888899999999999999999999998877632335778888899999899988998888888766532221
Q ss_pred ccCcCCCCchHHHHHHHHHHH-hhhCHHHHHHHHHH
Q 004614 594 DISAEDPTTPFAIVDMVSSAC-RKKIKKYREAAFSC 628 (742)
Q Consensus 594 ~~~~~~~~~~~~iv~~l~~~~-~~~~~~~R~~a~~~ 628 (742)
+ -..+++.+...+ .|.+.+||+.|+.-
T Consensus 166 ---e-----en~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 166 ---E-----ENRIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred ---h-----HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 123333333322 34577889888765
No 183
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=3.5 Score=43.51 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=76.7
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhh-HHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHhhcccccCcCC
Q 004614 522 SLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY-HHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAED 599 (742)
Q Consensus 522 ~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~-~~~l~p~L~~~l~-~r~~~~ke~vl~aL~~l~~~~~~~~~~~~ 599 (742)
..++.++++.+..+|..||..||.+++.-+..-... =...++.|++.+. +..-.+|..+|-|+++++++...+...+.
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344458899999999999999999998533210001 0125666777775 33456889999999999998765432110
Q ss_pred CCchHHHHHHHHHHHhh--hCHHHHHHHHHHHHHHHHHcCC
Q 004614 600 PTTPFAIVDMVSSACRK--KIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 600 ~~~~~~iv~~l~~~~~~--~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
. ..- ...+.+.+.+ .+...++.++..++.++.....
T Consensus 207 ~--~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 207 K--LNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred h--cCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 0 000 2245555555 5788899999999999987754
No 184
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=91.05 E-value=3.7 Score=46.55 Aligned_cols=109 Identities=18% Similarity=0.104 Sum_probs=78.6
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHH
Q 004614 120 KLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR 198 (742)
Q Consensus 120 ~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~-~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~ 198 (742)
.|.....||..+|..++.....-+|-+...--++++. ..++.+.+.+.+++..+|..+.|++-+++-++..+.....+.
T Consensus 423 plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ 502 (678)
T KOG1293|consen 423 PLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLA 502 (678)
T ss_pred HHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3333349999999999876665555444332333332 366668888899999999999999999999887555555566
Q ss_pred HHHHHHH-HHccCCcHHHHHHHHHHHHHHHH
Q 004614 199 RIWTAAF-RAMDDIKETVRTAGDKLCRSVTS 228 (742)
Q Consensus 199 ~i~~~l~-~~l~D~~~~VR~aA~~~~~~l~~ 228 (742)
.+....+ ....|++..|.+.+..+++++.+
T Consensus 503 ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 503 KIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 6655443 34579999999999888888743
No 185
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.81 E-value=13 Score=42.57 Aligned_cols=187 Identities=17% Similarity=0.133 Sum_probs=104.8
Q ss_pred hHHHHHHHHhccccc-h---hhhhhHHhhHHHHHHHhhhhhchhhhh-hhHHHhhhcCCCCHHHHHHHHHHHHHhcc--C
Q 004614 74 DLIYKFMDLANYQVS-L---NSKRGAAFGFSKIAKQAGDALKPHLRL-LIPKLVRFQYDPDKNVQDAMAHIWKSLVA--D 146 (742)
Q Consensus 74 ~lv~~fm~l~~~~~~-w---~~r~~A~~~l~~i~~~~~~~l~~~l~~-lip~L~~~~~Dp~~~VR~a~~~iw~~lv~--d 146 (742)
+.+.-||.-+.|... . .-|+ ..-||.. ..+.+...+..+-+ .=|-|||.+.-||..||..+...+--+.+ |
T Consensus 129 d~iq~~~~haiha~rsp~~sk~r~-Vl~~F~h-qkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~d 206 (1005)
T KOG1949|consen 129 DCIQDFMFHAIHAPRSPVHSKVRE-VLSYFHH-QKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRD 206 (1005)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHH-HHHHHHH-HHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCC
Confidence 567778887766431 0 0111 1111111 11123334444443 34788999999999999998776654432 3
Q ss_pred CH---HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH----hccCCchhhhhHHHHHHHHHHHHc-cCCcHHHHHH
Q 004614 147 PK---RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADI----IQGRKFDQVGKHLRRIWTAAFRAM-DDIKETVRTA 218 (742)
Q Consensus 147 ~~---~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L----~~~~~~~~l~~~L~~i~~~l~~~l-~D~~~~VR~a 218 (742)
|. ...+..++.=...+.+.+.|+-+.||.-|...+..+ -+-.++. .+.+++..++.-+ .|...+||-+
T Consensus 207 pd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~----i~~~ll~kI~d~~a~dt~s~VR~s 282 (1005)
T KOG1949|consen 207 PDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT----ILIDLLKKITDELAFDTSSDVRCS 282 (1005)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHhhhccchheehh
Confidence 31 123333333344466677888889997665544443 3344433 2345555555433 4666788888
Q ss_pred HHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004614 219 GDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLV 279 (742)
Q Consensus 219 A~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la 279 (742)
..+-+..+ + ..+ ....++..+||.+- -.+.+.+..||-++.+.|..|=
T Consensus 283 vf~gl~~~---l---~np------~sh~~le~~Lpal~-~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 283 VFKGLPMI---L---DNP------LSHPLLEQLLPALR-YSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HhcCcHHH---H---cCc------cchhHHHHHHHhcc-hhhhccchhHHHHHHHHHHHHH
Confidence 74333322 1 111 13457888888552 2356667889988888887664
No 186
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=90.69 E-value=6 Score=44.05 Aligned_cols=151 Identities=14% Similarity=0.116 Sum_probs=101.5
Q ss_pred HHHHHhhhcCChhHHHHHHHHhccccchh--hh-hhHHhhHHHHHH----HhhhhhchhhhhhhHHHhhhcC--------
Q 004614 62 ELCNLANEMGQPDLIYKFMDLANYQVSLN--SK-RGAAFGFSKIAK----QAGDALKPHLRLLIPKLVRFQY-------- 126 (742)
Q Consensus 62 ~l~~lA~~~~~p~lv~~fm~l~~~~~~w~--~r-~~A~~~l~~i~~----~~~~~l~~~l~~lip~L~~~~~-------- 126 (742)
-|.+|.++-|=..|++.|.......-.-| .+ -.-.+-+..++. ...=.++|||.+++|.++.|.=
T Consensus 227 AL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p 306 (576)
T KOG2549|consen 227 ALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRP 306 (576)
T ss_pred HHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCc
Confidence 56778888888889999988663321111 11 112223333322 2233689999999999996543
Q ss_pred --CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHhccCCchhhhhHHHHHHH
Q 004614 127 --DPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR--LWRSREASCLSLADIIQGRKFDQVGKHLRRIWT 202 (742)
Q Consensus 127 --Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~--~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~ 202 (742)
|.+=-+|+-+......++.+.......--..|...+.+.+.|+ .|....++...|..|-...-.--+.|.|.+.+.
T Consensus 307 ~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~ 386 (576)
T KOG2549|consen 307 ELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNE 386 (576)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHH
Confidence 4455688888888888887766555655667888888887665 588899999888887553322346678888888
Q ss_pred HHHHHccCCc
Q 004614 203 AAFRAMDDIK 212 (742)
Q Consensus 203 ~l~~~l~D~~ 212 (742)
.+...+++..
T Consensus 387 ~l~~~l~~~~ 396 (576)
T KOG2549|consen 387 RLQSVLDVES 396 (576)
T ss_pred Hhhhhcccch
Confidence 8888776543
No 187
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.66 E-value=2.4 Score=37.20 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHhhccC----CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhh
Q 004614 515 LYLGEIVSLICEGIAS----SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (742)
Q Consensus 515 ~yl~~il~~l~~~L~~----~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~ 590 (742)
++.=.|+..+...+.| .+-.-|+.+.++++.+++..|..+..+.++++-.|..++... +-++..+++...+++.
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHH
Confidence 3333344444455544 567889999999999999778888889999999999998765 6789999999999987
Q ss_pred ccc
Q 004614 591 CHK 593 (742)
Q Consensus 591 ~~~ 593 (742)
..+
T Consensus 85 L~~ 87 (107)
T PF08064_consen 85 LDE 87 (107)
T ss_pred CCH
Confidence 764
No 188
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.64 E-value=44 Score=39.96 Aligned_cols=123 Identities=5% Similarity=0.007 Sum_probs=79.9
Q ss_pred HHHHHHHhhccC-CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccc-C
Q 004614 519 EIVSLICEGIAS-SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI-S 596 (742)
Q Consensus 519 ~il~~l~~~L~~-~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~-~ 596 (742)
..++++.+-|+- ....+|....-++||+|..+-.... .-.|.+...|.+...-+|...+.-|+-+++. + .+ |
T Consensus 968 r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d----~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~-~-~vKw 1041 (1529)
T KOG0413|consen 968 RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTD----RYIPMIAASLCDPSVIVRRQTIILLARLLQF-G-IVKW 1041 (1529)
T ss_pred HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHH----HhhHHHHHHhcCchHHHHHHHHHHHHHHHhh-h-hhhc
Confidence 345555555543 3467899999999999987644443 4556677788887777887777777777652 1 12 2
Q ss_pred cCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhhh
Q 004614 597 AEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMC 653 (742)
Q Consensus 597 ~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~~ 653 (742)
. -.-++..+.. +-|.++++|.-|=++++.++..-...-++.-+++.+-.+.
T Consensus 1042 ~-----G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln 1092 (1529)
T KOG0413|consen 1042 N-----GELFIRFMLA-LLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIALN 1092 (1529)
T ss_pred c-----hhhHHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHH
Confidence 1 1223344433 4467999999999999999987643334455555554443
No 189
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=27 Score=40.82 Aligned_cols=202 Identities=10% Similarity=0.095 Sum_probs=122.7
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhh---HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccc
Q 004614 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY---HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD 594 (742)
Q Consensus 518 ~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~---~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~ 594 (742)
++.+.+++..+...++.||+.+...+..+.+..|..+... .|.=...|+.-+.+..++.|.+++--|.++++.++.-
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I 200 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI 200 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH
Confidence 4456778888888999999999999999999888765542 3455555666677766789999999999999877632
Q ss_pred cCc-CCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCC-CchHH--hHHHHHHhhhcCccccCCCCCCCCCCC
Q 004614 595 ISA-EDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD-PKFFN--IIFPLLFEMCGSTALNKSGQVPLPSDA 670 (742)
Q Consensus 595 ~~~-~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~-~~~~~--~v~~il~~~~~~~~~~~~~~~~a~~~~ 670 (742)
.+- .+......+..++-.|-.-...-|-.-++..|-.+.+.-.. ..+|. -++|=|.++.+.+....
T Consensus 201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d---------- 270 (970)
T KOG0946|consen 201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGD---------- 270 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccC----------
Confidence 110 01112344445555553333445666677777776665322 23333 56677777777664411
Q ss_pred CccccccccCCcch-hhhhhhhhhHHH--------------hhchhhHHhhhhhhhhhhhhcCCCCCCchhhhhhhhhhh
Q 004614 671 SKEESADESVSAPL-DKVLDCVSSCIH--------------VAHVNDIIEQEKNLVQLFTISLSPGFPWTGFRKRWTTLL 735 (742)
Q Consensus 671 a~~~~~~~~~~~p~-~~i~~~~~~a~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (742)
....-+ ++=+.+|..++. ....|..|..-.-+-.++.+.++|+-|..|---+|-|+-
T Consensus 271 --------~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvA 342 (970)
T KOG0946|consen 271 --------GEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVA 342 (970)
T ss_pred --------cccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHH
Confidence 011122 344444444441 012223444333333445555688889888888998876
Q ss_pred hc
Q 004614 736 EP 737 (742)
Q Consensus 736 ~~ 737 (742)
|-
T Consensus 343 ev 344 (970)
T KOG0946|consen 343 EV 344 (970)
T ss_pred HH
Confidence 53
No 190
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.23 E-value=16 Score=41.95 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=104.2
Q ss_pred hhHhhHhhcCCchHHHHHHHHHHHHhcCC-Ch----hhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcch
Q 004614 480 VPVIFISRFEDDKYVSDLFEELWEENTSG-DR----VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESL 554 (742)
Q Consensus 480 lP~l~~~~~d~~~~v~~~~~~~~~~~~~~-~~----~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~ 554 (742)
-|.++.+..-.+..||....+++-++-+- .+ ..+...++.=...+...|.|+-..+|..|.+.+..+...+=..+
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 37778777778888887766665444332 11 22333333334466777889999999999999988887654444
Q ss_pred hh-hHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 004614 555 SN-YHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQV 632 (742)
Q Consensus 555 ~~-~~~~l~p~L~~~l~-~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l 632 (742)
.+ .+..++..+...+. +...++|.++++.|..+..+-. --+....+++.+--.+.|+...||-++...|-++
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~------sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL------SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc------chhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 33 36667777777773 4457899999999988875211 1245677888777888899999999999888775
Q ss_pred HHH
Q 004614 633 IKA 635 (742)
Q Consensus 633 ~~~ 635 (742)
-.+
T Consensus 330 k~v 332 (1005)
T KOG1949|consen 330 KAV 332 (1005)
T ss_pred Hhh
Confidence 443
No 191
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=90.19 E-value=3 Score=36.53 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=71.8
Q ss_pred hhhchhhhhhhHHHhhhcCCCC---HH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 004614 108 DALKPHLRLLIPKLVRFQYDPD---KN-VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLAD 183 (742)
Q Consensus 108 ~~l~~~l~~lip~L~~~~~Dp~---~~-VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~ 183 (742)
+.+++++-.++-+.=.-..|++ |. =|..+....+.+++-....+....+.|+-.|..++..+ ..|..|+.+-..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHH
Confidence 4566666666666666667776 22 14444555555554444667888899999999999765 589999999999
Q ss_pred HhccCCchhhhhHHHHHHHHHHHHc
Q 004614 184 IIQGRKFDQVGKHLRRIWTAAFRAM 208 (742)
Q Consensus 184 L~~~~~~~~l~~~L~~i~~~l~~~l 208 (742)
++...+.+++.+.+.+++..++...
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 9998888889999998888776654
No 192
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.11 E-value=4.2 Score=46.59 Aligned_cols=196 Identities=12% Similarity=0.107 Sum_probs=109.4
Q ss_pred HHhhcChhHH-hhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHH
Q 004614 346 CINVVDTESL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASAC 424 (742)
Q Consensus 346 ~~~~~d~~~l-~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al 424 (742)
+...+|.+.+ ..++|.|.++++.. +..+|.--.+-+..++.++.... +-+++.+.+..++ .|.|+.+|+....++
T Consensus 318 ~~k~ld~~eyq~~i~p~l~kLF~~~-Dr~iR~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~-~DTn~~Lre~Tlksm 393 (690)
T KOG1243|consen 318 LGKDLDEEEYQVRIIPVLLKLFKSP-DRQIRLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGF-LDTNATLREQTLKSM 393 (690)
T ss_pred hhhhccccccccchhhhHHHHhcCc-chHHHHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhc-ccCCHHHHHHHHHHH
Confidence 3344443323 45889998888653 44555544444444444443333 5678999999999 799999999999999
Q ss_pred HHHHhhCCHHHHH-HHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhH-hhcCCchHHHHHHHHH
Q 004614 425 ASVLKYATPSQAQ-KLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI-SRFEDDKYVSDLFEEL 501 (742)
Q Consensus 425 ~~L~~~~~~~~~~-~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~-~~~d~~~~v~~~~~~~ 501 (742)
..++...+...++ +++.++..... ++...|.-...+++.++.+..... ++.+++.-|. ++.|+-..-|.. ++
T Consensus 394 ~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a--~v 468 (690)
T KOG1243|consen 394 AVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKA--GV 468 (690)
T ss_pred HHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhh--hh
Confidence 9998887776543 44444433332 234456555566666655432211 4444444332 234432222222 22
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Q 004614 502 WEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL 550 (742)
Q Consensus 502 ~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~ 550 (742)
|.-......-.....-..|++.+.-..-|++-.+|..|-+++...-.+.
T Consensus 469 ~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 469 LALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred HHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 2211111000111222344555555556888889999988887655543
No 193
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.05 E-value=40 Score=38.47 Aligned_cols=224 Identities=13% Similarity=0.109 Sum_probs=116.8
Q ss_pred ccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc--C-C---------chhHHHHHHHHH
Q 004614 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI--D-D---------KNSQISCAILLK 462 (742)
Q Consensus 395 p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~--~-d---------~~~r~~a~~~l~ 462 (742)
+--+.++..++... |.+.+|.+.+-..+.++.....+ ..++.++..+|. + + ...|. .++.
T Consensus 234 ~d~~~~~~~liAsa--d~~~~V~~~ae~~LKr~~~~~ed---~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~---kIL~ 305 (501)
T PF13001_consen 234 PDEERFPPLLIASA--DSNSSVSDRAEDLLKRLSVSLED---PDLVDRLFDLYLGKGIPPENGRPPASPRLQE---KILS 305 (501)
T ss_pred CcHhHHhheeeEEe--CCcchHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCCchhcCCCCCCHHHHH---HHHH
Confidence 44455555555553 67777877766666555433333 344555566664 2 1 12222 3344
Q ss_pred HHHhhchhhhhhhhhhhhhHhhHhhcCC--chHHHHHHHH-----HHHHhcCCChhhHHhhHHHHHHHHHhhcc------
Q 004614 463 SYSSVASDVLSGYHAVIVPVIFISRFED--DKYVSDLFEE-----LWEENTSGDRVTLQLYLGEIVSLICEGIA------ 529 (742)
Q Consensus 463 ~i~~~~~~~~~~~~~~vlP~l~~~~~d~--~~~v~~~~~~-----~~~~~~~~~~~~i~~yl~~il~~l~~~L~------ 529 (742)
-++|.... ....+.++..++.+.+.+ ...++....+ .|.-...+ +..+...-+-|..-....++
T Consensus 306 ~L~kS~~A--a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~-~~~l~~l~~~i~~~g~p~~~~~~~~~ 382 (501)
T PF13001_consen 306 LLSKSVIA--ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS-PQILKLLRPVILSQGWPLIQDSSSQS 382 (501)
T ss_pred HHHHhHHH--HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcC-HHHHHHHHHHHHhcCccccccccccC
Confidence 44443211 123455666667777655 3334432111 23221111 22233333333332223331
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHH
Q 004614 530 --SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIV 607 (742)
Q Consensus 530 --~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv 607 (742)
..+-.+|..+-.+||.|+.+.+..+..- -.++.-|.+++.+...+.|-.|-+||+.++..+...-.. .........
T Consensus 383 ~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~-~~~~~~~~~ 460 (501)
T PF13001_consen 383 NSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD-EDEQKRLLL 460 (501)
T ss_pred CCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc-hhHHHHHHH
Confidence 2467899999999999999887765332 235566667777777889999999999999876532110 000122233
Q ss_pred HHHHHH-HhhhCHHHHHHHHHHHHH
Q 004614 608 DMVSSA-CRKKIKKYREAAFSCLEQ 631 (742)
Q Consensus 608 ~~l~~~-~~~~~~~~R~~a~~~Lg~ 631 (742)
..+..+ ..+....+|-.|++-...
T Consensus 461 ~~l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 461 ELLLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHH
Confidence 333333 223345566666655444
No 194
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.79 E-value=2.9 Score=49.09 Aligned_cols=150 Identities=12% Similarity=0.169 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHhcc----C----------CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhh
Q 004614 128 PDKNVQDAMAHIWKSLVA----D----------PKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQV 193 (742)
Q Consensus 128 p~~~VR~a~~~iw~~lv~----d----------~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l 193 (742)
+++.+|.++.-....++. + .....+++.+.+.+.+-.....++-..+..+..|||++-.. ..
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----~~ 522 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----ES 522 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----GG
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----hh
Confidence 456777776444444442 2 11234455566666666566666667789999999998322 22
Q ss_pred hhHHHHHHHHHHHHcc---CCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHH
Q 004614 194 GKHLRRIWTAAFRAMD---DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKA 270 (742)
Q Consensus 194 ~~~L~~i~~~l~~~l~---D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~ 270 (742)
.+ .+...+. +....+|.+|..+++.++..+ ...+.+.++|++.+. ..+.|+|-.
T Consensus 523 i~-------~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-------------~~~v~~~l~~I~~n~---~e~~EvRia 579 (618)
T PF01347_consen 523 IP-------VLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-------------PEKVREILLPIFMNT---TEDPEVRIA 579 (618)
T ss_dssp HH-------HHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--------------HHHHHHHHHHHHH-T---TS-HHHHHH
T ss_pred hH-------HHHhHhhhccccchHHHHHHHHHHHHHhhcC-------------cHHHHHHHHHHhcCC---CCChhHHHH
Confidence 22 2222233 346789999966655442211 345788899998763 356889999
Q ss_pred HHHHHHHHHHhcCcccccchhhHHHHHHHhccc-cchHHHHHHH
Q 004614 271 SIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS-LEDQGLNYIE 313 (742)
Q Consensus 271 a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~-~e~~~~~~~~ 313 (742)
|+..|+.- .|- +.++..+.+.+.. ..+++.+|+.
T Consensus 580 A~~~lm~~--------~P~-~~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 580 AYLILMRC--------NPS-PSVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp HHHHHHHT------------HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHhc--------CCC-HHHHHHHHHHHhhCchHHHHHHHH
Confidence 98888652 122 2455556666643 3356666654
No 195
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=89.75 E-value=4.3 Score=46.49 Aligned_cols=135 Identities=18% Similarity=0.179 Sum_probs=87.5
Q ss_pred ccHHHHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchh-hhhhhhhhhhhHhhHhhc
Q 004614 412 KSAAAKRAFASACASVLKYATPSQA-QKLIEETAALHI-DDKNSQISCAILLKSYSSVASD-VLSGYHAVIVPVIFISRF 488 (742)
Q Consensus 412 ~~~~Vr~~~~~al~~L~~~~~~~~~-~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~-~~~~~~~~vlP~l~~~~~ 488 (742)
.+.+-+..+...+-..++..+++.+ .++.+.+...+. +| ++..++--+.+.... .-.+|-..++|.+.....
T Consensus 266 ks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~ 340 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK 340 (690)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence 4556677777777777777777654 456666666553 22 111222222111110 113477888898877666
Q ss_pred CCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcc
Q 004614 489 EDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES 553 (742)
Q Consensus 489 d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~ 553 (742)
-.|..+|-....-.+.++..... ..+-+.|++-+..++.|.+..+|....+++..|+..++..
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~--~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTK--QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCH--HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 67778887655444554433211 2456789999999999999999999999999999988865
No 196
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.44 E-value=41 Score=37.81 Aligned_cols=130 Identities=12% Similarity=0.222 Sum_probs=90.2
Q ss_pred HHhhHHHHHHHHHhhccC------------CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHH
Q 004614 513 LQLYLGEIVSLICEGIAS------------SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDAL 580 (742)
Q Consensus 513 i~~yl~~il~~l~~~L~~------------~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~v 580 (742)
.++|...+++.+.+.++= .-...|...+..+.|++-..|+.= -+.++.-.+.+ +..+|..-|++
T Consensus 334 frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e--~lk~~~~~l~e--~~~~We~~EAa 409 (559)
T KOG2081|consen 334 FRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDE--CLKQMYIRLKE--NNASWEEVEAA 409 (559)
T ss_pred hHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHcc--CCCchHHHHHH
Confidence 367888888887777642 125678889999999998888641 12222222222 34579999999
Q ss_pred HHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCC-CchHHhHHHHHHhh
Q 004614 581 LYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD-PKFFNIIFPLLFEM 652 (742)
Q Consensus 581 l~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~-~~~~~~v~~il~~~ 652 (742)
+-.+..++.... ++..+..|.+++.+...- ....+|..++..+|++.+|+.. ..+.+.+..++...
T Consensus 410 LF~l~~~~~~~~----~~e~~i~pevl~~i~nlp--~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~ 476 (559)
T KOG2081|consen 410 LFILRAVAKNVS----PEENTIMPEVLKLICNLP--EQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQG 476 (559)
T ss_pred HHHHHHHhccCC----ccccchHHHHHHHHhCCc--cchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999887543 334567888888887652 2345999999999999999964 34556666665543
No 197
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=89.35 E-value=7.5 Score=44.19 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=78.4
Q ss_pred HHhhhcCChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhh--hhc-hhhh-hhhHHHhhhcCCCCHHHHHHHHHHH
Q 004614 65 NLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGD--ALK-PHLR-LLIPKLVRFQYDPDKNVQDAMAHIW 140 (742)
Q Consensus 65 ~lA~~~~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~--~l~-~~l~-~lip~L~~~~~Dp~~~VR~a~~~iw 140 (742)
.|-+.+.+-+...+++++....+ -+ -+++ .+|+|+.-..+ .++ ..+. ..|.+|..|.+||.+.+|.......
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~-~~-i~~~--~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L 485 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPE-IM-IMGI--TLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL 485 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcc-hh-HHHH--HHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH
Confidence 44455566688888888773332 22 2333 34555443221 111 2232 5788888899999999999999998
Q ss_pred HHhccCCHHHHHHH-HHH-HHHHHHHhhCCCChhHHHHHHHHHHHHhccC
Q 004614 141 KSLVADPKRTIDEH-LDL-IFDDLLIQSGSRLWRSREASCLSLADIIQGR 188 (742)
Q Consensus 141 ~~lv~d~~~~i~~~-~~~-il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~ 188 (742)
..++-+.+.+.... +.. -.+.+....+|++|.|+|.+..-+-+|+-++
T Consensus 486 r~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 486 RHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 98887765433222 222 3445566789999999999999999987654
No 198
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=89.13 E-value=7.3 Score=38.33 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcCCchhHHH
Q 004614 377 GVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQIS 456 (742)
Q Consensus 377 ~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~d~~~r~~ 456 (742)
.+..+++.+..++|....|++.++++.+-..- ++++...|+++-.++|..++..+++.+-++++--.+.-......|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr-~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~~ra- 96 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLR-ESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQPGRA- 96 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCcccc-
Confidence 46677888888999888889999999888876 5666788999999999999999998877665533221000111121
Q ss_pred HHHHHHHHHhh-chhhhhhhhhhhhhHhhHhhc---C---CchH--H---HHHHHHHHHHhcCC--ChhhHHhhHHHHHH
Q 004614 457 CAILLKSYSSV-ASDVLSGYHAVIVPVIFISRF---E---DDKY--V---SDLFEELWEENTSG--DRVTLQLYLGEIVS 522 (742)
Q Consensus 457 a~~~l~~i~~~-~~~~~~~~~~~vlP~l~~~~~---d---~~~~--v---~~~~~~~~~~~~~~--~~~~i~~yl~~il~ 522 (742)
-++--+-++ .+..++-+.+.++|..-.... + ..+. . .....++|.-+-+- .|..+....+.+-+
T Consensus 97 --WLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~ 174 (198)
T PF08161_consen 97 --WLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAK 174 (198)
T ss_pred --hhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHH
Confidence 222222221 234566677778887643221 1 1111 1 23456778764222 23455555577777
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHH
Q 004614 523 LICEGIASSSWSSKRKSAKAICKL 546 (742)
Q Consensus 523 ~l~~~L~~~sw~vR~~Aa~~lg~L 546 (742)
.+...|.+. .++|...+.+|-.|
T Consensus 175 ~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 175 LLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHhcC-cchHHHHHHHHHHH
Confidence 777777663 56777777776654
No 199
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=88.93 E-value=2.2 Score=37.38 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=58.5
Q ss_pred ChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhh
Q 004614 573 LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEM 652 (742)
Q Consensus 573 ~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~ 652 (742)
+...|...+.+++.+++.++..+. ...|+|.-.+...+. .++.|..|+.+...++..++++++..++..++..+
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~----~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHIS----SALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356799999999999998776653 457888888888884 67799999999999999998766665555555444
No 200
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.65 E-value=8.1 Score=49.09 Aligned_cols=186 Identities=12% Similarity=0.093 Sum_probs=107.9
Q ss_pred HHhhhhhccccHHHHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHhhc-C---CchhHHHHHHHHHHHHhhchhhhhhhhh
Q 004614 403 LLFPVVKEEKSAAAKRAFASACASVLKYATPS-QAQKLIEETAALHI-D---DKNSQISCAILLKSYSSVASDVLSGYHA 477 (742)
Q Consensus 403 ~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~-~~~~li~~l~~~~~-~---d~~~r~~a~~~l~~i~~~~~~~~~~~~~ 477 (742)
.+.+.+.+-..+.+|+-++.++++++.. .+. ....++..+.+... + |......+...+++.-...+.....-..
T Consensus 55 ~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~e 133 (2067)
T KOG1822|consen 55 QLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLE 133 (2067)
T ss_pred HHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHH
Confidence 3333332334467888888888888876 322 22333333333332 1 2233344445555554433333222233
Q ss_pred hhhhHhhHhhcCCchHHHH-HHH---HHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcc
Q 004614 478 VIVPVIFISRFEDDKYVSD-LFE---ELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES 553 (742)
Q Consensus 478 ~vlP~l~~~~~d~~~~v~~-~~~---~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~ 553 (742)
..+.++.......+..++. .+. ....+ .+++ .+...+...+.-.....+.|.+..+|-++++|+..+....+..
T Consensus 134 dt~~if~~~~k~n~s~~~~~i~~~l~~~~~~-~g~~-s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~~~~ 211 (2067)
T KOG1822|consen 134 DTVQIFTKLVKTNESFVRQEIMITLHNALKG-MGGT-SAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLGGPG 211 (2067)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hccc-hHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhcCcc
Confidence 3444433322222222332 222 22222 2332 2344566777777777888999999999999999999876655
Q ss_pred h-hhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhc
Q 004614 554 L-SNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (742)
Q Consensus 554 ~-~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~ 591 (742)
+ ..-+..+...+.+.+.+.+|..|.++-+.++++..-.
T Consensus 212 ~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 212 LGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred ccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 4 3347777788888888888999999999988887644
No 201
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.37 E-value=26 Score=41.11 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=59.2
Q ss_pred HHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHh
Q 004614 513 LQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR---LWEGKDALLYAIGSIST 589 (742)
Q Consensus 513 i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r---~~~~ke~vl~aL~~l~~ 589 (742)
...|.+.+.+.+.......+...+..+.++||.+.. +..++.|...+.++ +...|-.++.||..+..
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence 345666666666666667777888888899987542 23556666666555 35578888888876654
Q ss_pred hcccccCcCCCCchHHHHHHHHHHHhh--hCHHHHHHHHHHH
Q 004614 590 SCHKDISAEDPTTPFAIVDMVSSACRK--KIKKYREAAFSCL 629 (742)
Q Consensus 590 ~~~~~~~~~~~~~~~~iv~~l~~~~~~--~~~~~R~~a~~~L 629 (742)
.++ ..+.+.+.+-..+ ++.++|.+|+..|
T Consensus 554 ~~~-----------~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 554 HCP-----------EKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp T-H-----------HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred cCc-----------HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 443 3344444444333 4688999997664
No 202
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.82 E-value=56 Score=37.35 Aligned_cols=103 Identities=9% Similarity=0.060 Sum_probs=50.1
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCcc
Q 004614 162 LLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEI 241 (742)
Q Consensus 162 Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~ 241 (742)
++....|.+..||..|..+|..++...+ + |+..+...+.++|.-.++..+.+.-+++..+.+. +
T Consensus 64 ~~DLcEDed~~iR~~aik~lp~~ck~~~--~---~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~-----d------ 127 (556)
T PF05918_consen 64 QLDLCEDEDVQIRKQAIKGLPQLCKDNP--E---HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ-----D------ 127 (556)
T ss_dssp HHHHHT-SSHHHHHHHHHHGGGG--T----T----HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHhcccHHHHHHHHHhHHHHHHhHH--H---HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc-----C------
Confidence 5555668889999999998888877643 3 4444555555556644445555554444444221 1
Q ss_pred chhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCc
Q 004614 242 SDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (742)
Q Consensus 242 ~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~ 284 (742)
....+..+.-.+... .+.++.+|.-++..|..=....+.
T Consensus 128 --~k~tL~~lf~~i~~~--~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 128 --PKGTLTGLFSQIESS--KSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp --HHHHHHHHHHHHH-----HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred --cHHHHHHHHHHHHhc--ccCchHHHHHHHHHHHHHHhhCcH
Confidence 223444444444310 123456777776666544444443
No 203
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.47 E-value=18 Score=37.31 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=59.5
Q ss_pred hcCCChhhHHhhHHHHHHHHHhhcc------CC----CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC--CC
Q 004614 505 NTSGDRVTLQLYLGEIVSLICEGIA------SS----SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP--GR 572 (742)
Q Consensus 505 ~~~~~~~~i~~yl~~il~~l~~~L~------~~----sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~--~r 572 (742)
+..+..--+.||+..+++-++.++- ++ ...+|.-||..++-+++.++......-|.+.-.+.+++- .|
T Consensus 263 LL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k 342 (450)
T COG5095 263 LLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREK 342 (450)
T ss_pred HhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhccc
Confidence 3444445668998888887777761 22 356999999999999999988766666777777888873 44
Q ss_pred ChhhHHHHHHHHHHHH
Q 004614 573 LWEGKDALLYAIGSIS 588 (742)
Q Consensus 573 ~~~~ke~vl~aL~~l~ 588 (742)
.+...-+.+..+..+.
T Consensus 343 ~~sT~YGalkgls~l~ 358 (450)
T COG5095 343 TESTQYGALKGLSILS 358 (450)
T ss_pred ccchhhhhhhhhhhhc
Confidence 5655566666665554
No 204
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.47 E-value=1.4e+02 Score=41.40 Aligned_cols=164 Identities=13% Similarity=0.094 Sum_probs=112.0
Q ss_pred HhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHHHHHHHHhcCCCCh---hhHHHHH-HHHHHHH
Q 004614 514 QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVLLESIMKEVPGRLW---EGKDALL-YAIGSIS 588 (742)
Q Consensus 514 ~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~-~~~~~~~l~p~L~~~l~~r~~---~~ke~vl-~aL~~l~ 588 (742)
.+..+.+++-+...+-++.|.-|.....+|+.++...... +..+...++..+...+.+.+. ++++... ..+..+.
T Consensus 1028 lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll 1107 (3550)
T KOG0889|consen 1028 LPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDIL 1107 (3550)
T ss_pred cchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHH
Confidence 4777888888888889999999999999999999887742 333566777888888877643 3333322 2233333
Q ss_pred hhcccccCc--CCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhh-hcCccccCCCCCC
Q 004614 589 TSCHKDISA--EDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEM-CGSTALNKSGQVP 665 (742)
Q Consensus 589 ~~~~~~~~~--~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~-~~~~~~~~~~~~~ 665 (742)
..+-..+.. +.......++..+..++...|..||..+..+|..+++.. +..+.+.+.|+=+.+ .+-+.
T Consensus 1108 ~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s-~~~v~~L~~p~K~~ll~p~f~-------- 1178 (3550)
T KOG0889|consen 1108 RVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELS-GKSVVKLLEPFKDVLLSPIFK-------- 1178 (3550)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhccccc--------
Confidence 333222211 112346778888999999999999999999999999988 446777777777766 22221
Q ss_pred CCCCCCccccccccCCcch---hhhhhhhhhHHHh
Q 004614 666 LPSDASKEESADESVSAPL---DKVLDCVSSCIHV 697 (742)
Q Consensus 666 a~~~~a~~~~~~~~~~~p~---~~i~~~~~~a~~~ 697 (742)
+.-...|+ --.++++..|...
T Consensus 1179 -----------k~lr~~p~~~qig~vd~~~fC~~l 1202 (3550)
T KOG0889|consen 1179 -----------KPLRALPFTIQIGHLDAITFCLSL 1202 (3550)
T ss_pred -----------cccccCCHHHHhhhHHHHHHHHHc
Confidence 34455666 3457777777765
No 205
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=87.22 E-value=62 Score=37.18 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=62.0
Q ss_pred HHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHh-cccccccHHHHHHHHhhhhhccccHHHHHHHH
Q 004614 343 LDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI-GMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (742)
Q Consensus 343 l~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~-g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~ 421 (742)
++.+.+.++.+.+.+++-.+...++.......|...++|++.+..-+ +.+.+.-.-.-+-.++..+..|++-.+...+.
T Consensus 465 ~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~AL 544 (559)
T PF14868_consen 465 LSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHAL 544 (559)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHH
Confidence 44456666677777777777777876555557778888887775443 23333333334455666666899999999999
Q ss_pred HHHHHHHhhCCH
Q 004614 422 SACASVLKYATP 433 (742)
Q Consensus 422 ~al~~L~~~~~~ 433 (742)
.|+++..+..+.
T Consensus 545 eAF~~FAe~T~~ 556 (559)
T PF14868_consen 545 EAFGQFAERTSH 556 (559)
T ss_pred HHHHHHhccCCc
Confidence 999998876653
No 206
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=86.97 E-value=70 Score=37.51 Aligned_cols=108 Identities=18% Similarity=0.263 Sum_probs=63.6
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHH---HHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCc--hh
Q 004614 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEH---LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF--DQ 192 (742)
Q Consensus 118 ip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~---~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~--~~ 192 (742)
+|..+.|+...++.|+..+..-...+...- ..+..- +.. ++.|+..+..+.-+|+..||.|+-+|+-+... ..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlgg-I~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGG-IPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhcc-HHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 344455556777777766554444444221 112111 222 34477778888899999999999999987654 23
Q ss_pred hh-hHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHH
Q 004614 193 VG-KHLRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTS 228 (742)
Q Consensus 193 l~-~~L~~i~~~l~~~l~D-~~~~VR~aA~~~~~~l~~ 228 (742)
++ ++... ++.+.+++.. .+.+||+....++++|..
T Consensus 313 lai~~~~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 313 LAIKELNG-VPTLVRLLRHTQDDEVRELITGILWNLSS 349 (717)
T ss_pred hhhhhcCC-hHHHHHHHHhhcchHHHHHHHHHHhcccc
Confidence 32 22222 2333344432 445788888877877754
No 207
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.96 E-value=21 Score=40.07 Aligned_cols=216 Identities=13% Similarity=0.199 Sum_probs=118.3
Q ss_pred CcchHHHHHHHhhhcCChhHHH------HHH-------HHhccccchhhhhhHHhhHHHHHHHh--------hhhhchhh
Q 004614 56 KLSTYKELCNLANEMGQPDLIY------KFM-------DLANYQVSLNSKRGAAFGFSKIAKQA--------GDALKPHL 114 (742)
Q Consensus 56 ~~~tyk~l~~lA~~~~~p~lv~------~fm-------~l~~~~~~w~~r~~A~~~l~~i~~~~--------~~~l~~~l 114 (742)
..=.-+-+|++=.++|+.-.+. .|+ -.+.|+ +|.--+..+-...++-+.. ...++||.
T Consensus 260 d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~-~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~ 338 (559)
T KOG2081|consen 260 DLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHN-DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYF 338 (559)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCC-chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHH
Confidence 3335556688888887752211 122 222444 3533333332223344322 23467898
Q ss_pred hhhhHHHhhhcC-CC-----------CHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 004614 115 RLLIPKLVRFQY-DP-----------DKNVQDAMAHIWKSLVA--DPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS 180 (742)
Q Consensus 115 ~~lip~L~~~~~-Dp-----------~~~VR~a~~~iw~~lv~--d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~A 180 (742)
.+++.-+++..+ +| -..-|..+.+..+-++. +. ++.+..+...+.. ++..|+.-||+..-
T Consensus 339 ~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs----~e~lk~~~~~l~e--~~~~We~~EAaLF~ 412 (559)
T KOG2081|consen 339 LRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGS----DECLKQMYIRLKE--NNASWEEVEAALFI 412 (559)
T ss_pred HHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHHcc--CCCchHHHHHHHHH
Confidence 999999987443 22 12455556555443221 11 3334443333433 57789999999988
Q ss_pred HHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCC
Q 004614 181 LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGI 260 (742)
Q Consensus 181 l~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl 260 (742)
+..++...+++ =.+-+++++..+++.-. ...+|.++..++..+.+|.- ...+.++.++.+++. |+
T Consensus 413 l~~~~~~~~~~-e~~i~pevl~~i~nlp~--Q~~~~~ts~ll~g~~~ew~~-----------~~p~~le~v~~~~~~-~~ 477 (559)
T KOG2081|consen 413 LRAVAKNVSPE-ENTIMPEVLKLICNLPE--QAPLRYTSILLLGEYSEWVE-----------QHPELLEPVLRYIRQ-GL 477 (559)
T ss_pred HHHHhccCCcc-ccchHHHHHHHHhCCcc--chhHHHHHHHHHHHHHHHHH-----------hCcHHHHHHHHHHHH-Hh
Confidence 88887766533 23445555555544322 22289998777777777662 123455666666654 33
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccccchhhHHH
Q 004614 261 LSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVS 295 (742)
Q Consensus 261 ~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~ 295 (742)
.. .+....+..+...++..+...+.+++|.+..
T Consensus 478 ~~--~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~ 510 (559)
T KOG2081|consen 478 QL--KRLASAAALAFHRICSACRVQMTCLIPSLLE 510 (559)
T ss_pred hh--cchhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 32 2256666677777777766555555444443
No 208
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=86.93 E-value=48 Score=35.56 Aligned_cols=205 Identities=15% Similarity=0.120 Sum_probs=116.2
Q ss_pred cHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHH----HH-------HHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 004614 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS----QA-------QKLIEETAALHIDDKNSQISCAILLKSY 464 (742)
Q Consensus 396 ~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~----~~-------~~li~~l~~~~~~d~~~r~~a~~~l~~i 464 (742)
|...++..++..+ ..=.-+.|+.++.-++.+.+...+. .+ .+++..+...| ++++.-..+|.++...
T Consensus 73 ~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy-~~~dial~~g~mlRec 150 (335)
T PF08569_consen 73 YRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY-ENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG-GSTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh-cCccccchHHHHHHHH
Confidence 5556677777777 4456788999888888888864332 11 12233344444 4556666777777776
Q ss_pred Hhhchhhhhhhh--hhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhh----HHhhHHHHHHHHHhhccCCCHHHHHH
Q 004614 465 SSVASDVLSGYH--AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVT----LQLYLGEIVSLICEGIASSSWSSKRK 538 (742)
Q Consensus 465 ~~~~~~~~~~~~--~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~----i~~yl~~il~~l~~~L~~~sw~vR~~ 538 (742)
.++-. +..++ +..+--+|.....+.=+|..-.-....++....+.. +....+.++......|.+.+.-.||+
T Consensus 151 ~k~e~--l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 151 IKHES--LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp TTSHH--HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HhhHH--HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 65421 11110 111111233333333344332222233322222222 34456788888889999999999999
Q ss_pred HHHHHHHHHHHhCc-c-hhhh--HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHH
Q 004614 539 SAKAICKLGEILGE-S-LSNY--HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSA 613 (742)
Q Consensus 539 Aa~~lg~La~~~g~-~-~~~~--~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~ 613 (742)
+.+.||++...... . +..| =+.-+-.+..-|++++-+.+-+++.-+--++.+-. -.+.|.+++.+-
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~---------K~~~I~~iL~~N 298 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN---------KPPPIVDILIKN 298 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS----------BHHHHHHHHHT
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC---------CChHHHHHHHHH
Confidence 99999999965432 2 2223 24556666777788888889888888888876422 246777777643
No 209
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.90 E-value=43 Score=34.96 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=66.6
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004614 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL 238 (742)
Q Consensus 159 l~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~ 238 (742)
+.++...+.+.++.||++|..-+..+..+ +...+..|-...++.+++.+.|.++ .+.|| .++.++. ...
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~----~alVnls----q~~- 73 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAA----TALVNLS----QKE- 73 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHH----HHHHHHH----hhH-
Confidence 44577778888999999999887777665 5567777778888888998998888 33333 2332221 000
Q ss_pred CccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004614 239 TEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (742)
Q Consensus 239 ~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~ 280 (742)
.-.+.+++.++.+++.+ +.++.+......|..+.++++
T Consensus 74 ---~l~~~ll~~~~k~l~~~-~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 74 ---ELRKKLLQDLLKVLMDM-LTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred ---HHHHHHHHHHHHHHHHH-hcCcccchHHHHHHHHHHhcc
Confidence 01233555555566543 344445555555666666554
No 210
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.58 E-value=86 Score=39.28 Aligned_cols=115 Identities=10% Similarity=0.123 Sum_probs=77.7
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhh------hHHHHHHHHHHhc-C-CCChhhHHH-------HHHHHHH
Q 004614 522 SLICEGIASSSWSSKRKSAKAICKLGEILGESLSN------YHHVLLESIMKEV-P-GRLWEGKDA-------LLYAIGS 586 (742)
Q Consensus 522 ~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~------~~~~l~p~L~~~l-~-~r~~~~ke~-------vl~aL~~ 586 (742)
..+.+...|.-.+||..|+.++=.+...-|..+.+ ....++|.|.+.- + -.+|+||+- .+.+++.
T Consensus 1000 ~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisg 1079 (1610)
T KOG1848|consen 1000 VHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISG 1079 (1610)
T ss_pred HHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHH
Confidence 33445556777899999999999998887776655 2556777775333 2 245888764 5556666
Q ss_pred HHhhcccccCc-----CCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHc
Q 004614 587 ISTSCHKDISA-----EDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (742)
Q Consensus 587 l~~~~~~~~~~-----~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~ 636 (742)
+++-+.+.... .....-+.++..+-+...+.++++.-+|+.++..+....
T Consensus 1080 Iaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1080 IAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 65555443321 111234677778888888889999999999998877643
No 211
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=86.28 E-value=75 Score=37.18 Aligned_cols=393 Identities=13% Similarity=0.147 Sum_probs=185.7
Q ss_pred HHHHHHHHhccccchhhhhhHHhhHHH----HHHHh---hhhhchhhhhhhHHHh-------hhcCCCC----------H
Q 004614 75 LIYKFMDLANYQVSLNSKRGAAFGFSK----IAKQA---GDALKPHLRLLIPKLV-------RFQYDPD----------K 130 (742)
Q Consensus 75 lv~~fm~l~~~~~~w~~r~~A~~~l~~----i~~~~---~~~l~~~l~~lip~L~-------~~~~Dp~----------~ 130 (742)
.++-+|+..+|-. -..-++.|+|-+ ++++. ++...-++.+++-..+ .|+.|.| .
T Consensus 336 ~vpyllq~l~~e~--ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~ 413 (980)
T KOG2021|consen 336 IVPYLLQFLNNEF--DDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFE 413 (980)
T ss_pred HHHHHHHHhcccc--hhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHH
Confidence 4556666655542 222344554443 44443 2333334555554444 2555555 2
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCch-------hhh--hHHHHHH
Q 004614 131 NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD-------QVG--KHLRRIW 201 (742)
Q Consensus 131 ~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~-------~l~--~~L~~i~ 201 (742)
.+|.-....-..++.-.|...-.....-+..-+.+-...+|..-|.|..-+-.+-++...+ ++. .-+.++.
T Consensus 414 e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~ 493 (980)
T KOG2021|consen 414 EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNE 493 (980)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHH
Confidence 4555544433443322222222233333444444455567888888888777776654322 122 1233444
Q ss_pred HHHHH--HccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhh-cCCCCChHHHHHHHHHHHHHH
Q 004614 202 TAAFR--AMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA-EGILSKVDSISKASIGVVMKL 278 (742)
Q Consensus 202 ~~l~~--~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~-~gl~~~~~~vr~~a~~~L~~l 278 (742)
+.+.. ++...++.|.--= ...+.++. ..++.. .+ .+..++-..++ +|+.+.+..||.-+.-...+.
T Consensus 494 ~ll~tsqv~~h~h~lVqLlf---mE~ivRY~-kff~~e------sq-~ip~vL~aFld~rglhn~ne~Vr~RawYLF~Rf 562 (980)
T KOG2021|consen 494 LLLMTSQVLAHDHELVQLLF---MELIVRYN-KFFSTE------SQ-KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRF 562 (980)
T ss_pred HHHHHcccccCCchHHHHHH---HHHHHHHH-HHHhcc------hh-hhHHHHHHHccchhccccccccchHHHHHHHHH
Confidence 43332 2345566554432 22222211 112211 22 33344444444 899998999999999999999
Q ss_pred HHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhh---hHHhhhh-ccCCcHHHHHHHHHhhcChhH
Q 004614 279 VKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKL---ENLRISI-AKGSPMWDTLDLCINVVDTES 354 (742)
Q Consensus 279 a~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~---d~~r~~~-~~~s~l~~al~~~~~~~d~~~ 354 (742)
+|...+.+-||+.+++..+-.+|...-|. .|.-. .+....++++ |+...-+ ...+|.-..-..+-..++...
T Consensus 563 VKlLkkqlvpfie~iln~iqdlL~~~vtt-~N~~s---~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~ 638 (980)
T KOG2021|consen 563 VKLLKKQLVPFIEEILNKIQDLLHIKVTT-INAQS---DNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLI 638 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcCCC-cCccc---cccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHH
Confidence 99999999999999998888877422221 11000 0000000000 1111000 011111111111112223333
Q ss_pred HhhHHHHHHHHHHccCCCchHhhHHH----HHHHHHHHhcccccc--------cHHHHHHHHhhhhh-ccccHHHHHHHH
Q 004614 355 LDQLVPHLARLVRSGIGLNTRVGVAS----FISLLVQKIGMDIKP--------YTSMLLRLLFPVVK-EEKSAAAKRAFA 421 (742)
Q Consensus 355 l~~lvp~L~~~l~~~~~~~~r~~a~~----~l~~L~~~~g~~l~p--------~~~~ll~~Ll~~l~-~D~~~~Vr~~~~ 421 (742)
.+..+..+...+.+....+....-+. .++.+++.+.....+ .-.+.++.++..+. -...+.+|...-
T Consensus 639 ~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavr 718 (980)
T KOG2021|consen 639 LDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVR 718 (980)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHH
Confidence 33334333333434334455543222 344454444332211 11234444444441 124567888888
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhH
Q 004614 422 SACASVLKYATPSQAQKLIEETAALHID--DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI 485 (742)
Q Consensus 422 ~al~~L~~~~~~~~~~~li~~l~~~~~~--d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~ 485 (742)
..+++++...+++.+ .+++++++.... |..+-....-++..+.......+-+.+.+.+|.++.
T Consensus 719 ft~hRmI~~lg~~vl-Pfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~ 783 (980)
T KOG2021|consen 719 FTFHRMIPILGNKVL-PFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLN 783 (980)
T ss_pred HHHHHHHHhcchhhh-cchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999888876643 455666555532 333222333344444333344555666666666543
No 212
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.21 E-value=4.9 Score=34.16 Aligned_cols=71 Identities=14% Similarity=0.037 Sum_probs=58.2
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCC
Q 004614 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK 189 (742)
Q Consensus 118 ip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~ 189 (742)
+.+.+.+..||.+.||--.......|+.... ......+.++.-++..+.|++.-|=-+|..+++.|....+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 4455666799999999999999999887543 2444578899999999999999999999999999987765
No 213
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=85.97 E-value=1.3e+02 Score=39.68 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=37.9
Q ss_pred hHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 004614 512 TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (742)
Q Consensus 512 ~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~ 556 (742)
.+...++.++.++..++...+-.+-+.+..|+-.|+...|..|.+
T Consensus 1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~ 1497 (1780)
T PLN03076 1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSD 1497 (1780)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCH
Confidence 355677888888888888889999999999999999988887655
No 214
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.35 E-value=49 Score=40.86 Aligned_cols=222 Identities=14% Similarity=0.164 Sum_probs=127.8
Q ss_pred CCCcchHHHHHHHhh--hcCCh----hHHHHHHHHhccccchhhhhhH--HhhHHHHHHH-hhhhhchhhhhhhHHHhhh
Q 004614 54 GGKLSTYKELCNLAN--EMGQP----DLIYKFMDLANYQVSLNSKRGA--AFGFSKIAKQ-AGDALKPHLRLLIPKLVRF 124 (742)
Q Consensus 54 ~~~~~tyk~l~~lA~--~~~~p----~lv~~fm~l~~~~~~w~~r~~A--~~~l~~i~~~-~~~~l~~~l~~lip~L~~~ 124 (742)
.+...++..+|++-. +.--| +.+-+.|+.......|-.||.| =+.+-+|.+. ....+++.+++-+-+|+-.
T Consensus 708 e~~~~gf~~lC~f~~s~~~~~~~lp~~wLee~l~~i~~kt~~itRRSaGlP~ll~al~~te~~~~~k~ll~r~~~~Ll~i 787 (1417)
T KOG1810|consen 708 ESARPGFTALCSFLQSNESRFPELPELWLEELLEKILAKTSGITRRSAGLPFLLTALVETELKLGMKELLPRCFCKLLKI 787 (1417)
T ss_pred hhccccHHHHHHHHHhcccccccCcHHHHHHHHHHHHhhcccchhccCCCCHHHHHHHHhhhcccchhhhHHHHHHHHHH
Confidence 345677888885433 22222 5677888777666678889944 3666676543 3344566666666666655
Q ss_pred cCCCCHHHHHH-------HHHHHHHhccCCH--HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhc---cC----
Q 004614 125 QYDPDKNVQDA-------MAHIWKSLVADPK--RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ---GR---- 188 (742)
Q Consensus 125 ~~Dp~~~VR~a-------~~~iw~~lv~d~~--~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~---~~---- 188 (742)
..-|.|.++.. +.++.+++..++. ....+++.+-|.--+.++....|..|.+|.+.++.|.. |.
T Consensus 788 a~~p~~~~~~~~~~p~VHA~NvmkaIf~~~~LS~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaALi~RvfGv~~s~ 867 (1417)
T KOG1810|consen 788 AECPLPGEWGEGDEPRVHAMNVMKAIFTSSILSNERSEFQSRALRLAIEGFSHDMWAERNSATLLFAALINRVFGVIRSR 867 (1417)
T ss_pred hcCCCccccCCCcchhhhhHHHHHHHHccchhhHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHHHHHHHHHhhhHH
Confidence 55555554332 4556667665542 34566788888888889988889999999999988864 20
Q ss_pred ---------CchhhhhHHHHHHHHHHHHcc----CCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHH
Q 004614 189 ---------KFDQVGKHLRRIWTAAFRAMD----DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFL 255 (742)
Q Consensus 189 ---------~~~~l~~~L~~i~~~l~~~l~----D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~L 255 (742)
+.-.+-..++.+.+.+++.++ +...+-+... .++.+--++-|+-..... .+.--+.+..|++
T Consensus 868 ~~~~~r~~~S~~~FFtkyp~L~~~ll~~Less~a~~sgs~q~s~--aL~piLl~LSrL~~~~~~---~~~~~ls~F~p~l 942 (1417)
T KOG1810|consen 868 LCLDHRNRLSGLEFFTKYPTLHPLLLTELESSDAQLSGSEQSSL--ALWPILLMLSRLYPSAPR---SATLGLSVFVPFL 942 (1417)
T ss_pred hhcccccccchhhhhhcCccHHHHHHHHhhhhccCCCcccCccc--cHHHHHHHHHhhcccCCc---cccCCchhhhHHH
Confidence 001122234455555554443 1111111111 122222222233222111 1112456778888
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHh
Q 004614 256 LAEGILSKVDSISKASIGVVMKLVKG 281 (742)
Q Consensus 256 l~~gl~~~~~~vr~~a~~~L~~la~~ 281 (742)
++. ..+++..+|..|..++..++..
T Consensus 943 ~ec-t~q~~~~vRemAs~vl~~L~~~ 967 (1417)
T KOG1810|consen 943 QEC-TCQSNLKVREMASLVLLALVDA 967 (1417)
T ss_pred HHH-HhhhhHHHHHHHHHHHHHHHHH
Confidence 873 2344588999888888888866
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.83 E-value=11 Score=45.18 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=84.2
Q ss_pred hhhhhHHhhHHHHHHHhh----hhhchhhhhhhHHHhhhcCC-CCHHHHHHHHHHHHHhccCCHHHH-HHHHHHHHHHHH
Q 004614 90 NSKRGAAFGFSKIAKQAG----DALKPHLRLLIPKLVRFQYD-PDKNVQDAMAHIWKSLVADPKRTI-DEHLDLIFDDLL 163 (742)
Q Consensus 90 ~~r~~A~~~l~~i~~~~~----~~l~~~l~~lip~L~~~~~D-p~~~VR~a~~~iw~~lv~d~~~~i-~~~~~~il~~Ll 163 (742)
..|--|||-|+.|+.+-. .-+++. ++..-+..+.| |.|-.|+=.+-|.+.|-.|..... ...=+.--+.|.
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~---li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGN---LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI 648 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhcccc---HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence 355577899999987641 123333 33333444677 589999998888888877653311 111112223466
Q ss_pred HhhCCCChhHHHHHHHHHHHHhccCC--c-hhh------------hhHHHHHHH----HHHHHccCCcHHHHHHHHHHHH
Q 004614 164 IQSGSRLWRSREASCLSLADIIQGRK--F-DQV------------GKHLRRIWT----AAFRAMDDIKETVRTAGDKLCR 224 (742)
Q Consensus 164 ~~l~~~~wrvR~aa~~Al~~L~~~~~--~-~~l------------~~~L~~i~~----~l~~~l~D~~~~VR~aA~~~~~ 224 (742)
..+.|+.++||.+|..|||.++.+.+ + ++. +...+.++. .++.+..|..+.||.+..-++.
T Consensus 649 ~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 649 LLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 77888999999999999999998531 1 110 011223333 5667788999999998755554
Q ss_pred HH
Q 004614 225 SV 226 (742)
Q Consensus 225 ~l 226 (742)
.+
T Consensus 729 ~~ 730 (1387)
T KOG1517|consen 729 HF 730 (1387)
T ss_pred HH
Confidence 43
No 216
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=84.42 E-value=11 Score=38.76 Aligned_cols=136 Identities=10% Similarity=0.141 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHH-HHHHccCCcHHHHHHHHHHHHHHHH
Q 004614 150 TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTA-AFRAMDDIKETVRTAGDKLCRSVTS 228 (742)
Q Consensus 150 ~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~-l~~~l~D~~~~VR~aA~~~~~~l~~ 228 (742)
.+.-||+.++..++.- .+-..|++|... |-...+..++.||+.+.+.. +.+.+.|-. .+.++..
T Consensus 194 ELq~YF~kvisal~dE---s~~~~r~aAl~s---Lr~dsGlhQLvPYFi~f~~eqit~Nl~nl~---------~LtTv~~ 258 (450)
T COG5095 194 ELQMYFDKVISALLDE---SDEQTRDAALES---LRNDSGLHQLVPYFIHFFNEQITKNLKNLE---------KLTTVVM 258 (450)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH---hccCccHHHHHHHHHHHHHHHHHHhhhhHH---------HHHHHHH
Confidence 4455777766666432 234678877654 33445566788887766542 222222211 1222221
Q ss_pred HHHhhhccccCccchhHhHHHHHhHH----HhhcCCCCChH-----HHHHHHHHHHHHHHHhcCcccccchhhHHHHHHH
Q 004614 229 LTIRLCDVTLTEISDARQSMDIVLPF----LLAEGILSKVD-----SISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLE 299 (742)
Q Consensus 229 ~~~r~~~~~~~~~~~~~~~l~~lLP~----Ll~~gl~~~~~-----~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~ 299 (742)
....+++.. .....+++.++||- ++.+.+.++.+ .+|.+|...+.-++++++..-+..-|.+.-.++.
T Consensus 259 m~~sLL~N~---~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllK 335 (450)
T COG5095 259 MYSSLLKNK---YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLK 335 (450)
T ss_pred HHHHHhcCC---ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHH
Confidence 111122211 11233455555554 44433444332 3899999999999999887655555666777766
Q ss_pred hccc
Q 004614 300 SLSS 303 (742)
Q Consensus 300 ~ls~ 303 (742)
++-+
T Consensus 336 afLD 339 (450)
T COG5095 336 AFLD 339 (450)
T ss_pred HHHh
Confidence 6543
No 217
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.42 E-value=9 Score=35.37 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=75.4
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCC
Q 004614 522 SLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPT 601 (742)
Q Consensus 522 ~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~ 601 (742)
......+.+++|..-- -|.|+++.-+ ..-...+..|.++++.+...+..-.|.-|-.++.+|+..++.+..
T Consensus 12 kATs~~~~~~Dw~~~l----~icD~i~~~~----~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~- 82 (140)
T PF00790_consen 12 KATSESLPSPDWSLIL----EICDLINSSP----DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA- 82 (140)
T ss_dssp HHT-TTSSS--HHHHH----HHHHHHHTST----THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT-
T ss_pred HHhCcCCCCCCHHHHH----HHHHHHHcCC----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh-
Confidence 3444566778886543 3555555432 134678888999998888888888898899999999866542100
Q ss_pred chHHHHHHHHHHHhhh-CHH---HHHHHHHHHHHHHHHcCCCchHHhHHHHHHhh
Q 004614 602 TPFAIVDMVSSACRKK-IKK---YREAAFSCLEQVIKAFRDPKFFNIIFPLLFEM 652 (742)
Q Consensus 602 ~~~~iv~~l~~~~~~~-~~~---~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~ 652 (742)
...++..+.+.++++ ... ||+.++..+......++++.-...+...-..+
T Consensus 83 -~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~L 136 (140)
T PF00790_consen 83 -SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRL 136 (140)
T ss_dssp -SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHH
Confidence 233455555544332 233 99999999999999996643333444443333
No 218
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.35 E-value=27 Score=40.61 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=57.2
Q ss_pred CChhHHHHHHHHHHHHhcc-CC-c--------hhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004614 169 RLWRSREASCLSLADIIQG-RK-F--------DQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL 238 (742)
Q Consensus 169 ~~wrvR~aa~~Al~~L~~~-~~-~--------~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~ 238 (742)
++..+|.+|+.+++.++.. +. . +++.+|+.+.+... .++.++..+... +++|+..-
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~---LkaLGN~g-------- 474 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQA---VSKGDEEEIQLY---LKALGNAG-------- 474 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH---HhcCCchheeeH---HHhhhccC--------
Confidence 3567899999999999972 21 1 23444444443333 333333334444 45544310
Q ss_pred CccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcc
Q 004614 239 TEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA 285 (742)
Q Consensus 239 ~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~ 285 (742)
....+..+.|++. |-......+|..|+.+|-.+++.....
T Consensus 475 -----~~~~i~~l~~~l~--~~~~~~~~iR~~Av~Alr~~a~~~p~~ 514 (574)
T smart00638 475 -----HPSSIKVLEPYLE--GAEPLSTFIRLAAILALRNLAKRDPRK 514 (574)
T ss_pred -----ChhHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHhCchH
Confidence 2335667777765 323346789999999999888766543
No 219
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=84.23 E-value=52 Score=33.58 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=36.2
Q ss_pred hcCChhHHHHHHHHh-ccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHH
Q 004614 69 EMGQPDLIYKFMDLA-NYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAM 136 (742)
Q Consensus 69 ~~~~p~lv~~fm~l~-~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~ 136 (742)
.+++.+-+..+.... ..++..--|.-|+++||++.... +++.|=+|..||...||.+.
T Consensus 62 Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~----------~~~~l~k~~~dp~~~v~ETc 120 (289)
T KOG0567|consen 62 QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPE----------SLEILTKYIKDPCKEVRETC 120 (289)
T ss_pred hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcchh----------hHHHHHHHhcCCccccchHH
Confidence 344455666665543 23444667888999999976211 23333344589999999974
No 220
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.22 E-value=14 Score=31.37 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=55.2
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 004614 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTS 228 (742)
Q Consensus 158 il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~ 228 (742)
.++..+..+.|+..-+|-.+..-|..|++..+ .-....+.++..++..+.|.++-|=-+|.+.+..++.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 35557778899999999999999999999877 2334567888888889999999999998666665543
No 221
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=83.88 E-value=69 Score=35.85 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=30.8
Q ss_pred ccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCC
Q 004614 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (742)
Q Consensus 395 p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~ 432 (742)
+=+..+++.|+..++.++|...++..+.++..|+..+.
T Consensus 308 ~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~ 345 (441)
T PF12054_consen 308 KKLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCV 345 (441)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh
Confidence 33667788888888788899999999999998876543
No 222
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.60 E-value=6.2 Score=47.10 Aligned_cols=153 Identities=8% Similarity=0.006 Sum_probs=97.2
Q ss_pred hhhHhhHhhcCCchHHHHHHHHHHHHhcC---CChhhHHhhHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHhCc
Q 004614 479 IVPVIFISRFEDDKYVSDLFEELWEENTS---GDRVTLQLYLGEIVSLICEGIAS---SSWSSKRKSAKAICKLGEILGE 552 (742)
Q Consensus 479 vlP~l~~~~~d~~~~v~~~~~~~~~~~~~---~~~~~i~~yl~~il~~l~~~L~~---~sw~vR~~Aa~~lg~La~~~g~ 552 (742)
|.|.++...+.+..++|+...=+|..+.. +|. +...-+..-..+++.|.+ -+.+.|--||..|..++..+.-
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ--~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQ--ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhH--HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 55777777777778888877777766533 232 222222222333344444 2458999999999999986431
Q ss_pred c-hhhhHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 004614 553 S-LSNYHHVLLESIMKEVPG-RLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (742)
Q Consensus 553 ~-~~~~~~~l~p~L~~~l~~-r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg 630 (742)
. -.-.-..++.++.+-+.+ +.|--|.=++-.||.|-+...+.-|. .....-...+...++|+-++||.+|+++||
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~---G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS---GRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc---cccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 1 011234577788888866 45666777777787776655443331 112223345667788889999999999999
Q ss_pred HHHHHc
Q 004614 631 QVIKAF 636 (742)
Q Consensus 631 ~l~~~~ 636 (742)
.|+...
T Consensus 668 tfl~~~ 673 (1387)
T KOG1517|consen 668 TFLSNG 673 (1387)
T ss_pred HHhccc
Confidence 999975
No 223
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=83.48 E-value=4.2 Score=40.42 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=59.0
Q ss_pred hhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhh
Q 004614 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (742)
Q Consensus 115 ~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~ 194 (742)
+...+.+..+..|+|+-+|++....+-.... ..+++.++..+...+.|+++.||.+..++|.++....+ +...
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~------~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~-~~v~ 191 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIR------KEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP-DEVL 191 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGG------GCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H-HHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH-HHHH
Confidence 5577888888999999999998654322222 25778888888889999999999999999999866543 6666
Q ss_pred hHHHH
Q 004614 195 KHLRR 199 (742)
Q Consensus 195 ~~L~~ 199 (742)
+|+.+
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 224
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=83.12 E-value=1.7e+02 Score=38.67 Aligned_cols=272 Identities=8% Similarity=0.032 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhh----C
Q 004614 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKY----A 431 (742)
Q Consensus 356 ~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~----~ 431 (742)
.+++-.+..++++......|....+.+..++...+..++.=-..++..+-... .++++.+-+.+...+..+++- .
T Consensus 1181 kefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa-~d~~e~iV~lAFetl~~I~~d~f~~l 1259 (1780)
T PLN03076 1181 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAA-YDDHKNIVLLAFEIIEKIIREYFPYI 1259 (1780)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHhhhhhc
Confidence 46777777777766666777788888888888888777766667777777666 577766655555556555431 1
Q ss_pred C---HHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcC--CchHHHHHHHHHHHH
Q 004614 432 T---PSQAQKLIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE--DDKYVSDLFEELWEE 504 (742)
Q Consensus 432 ~---~~~~~~li~~l~~~~~--~d~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d--~~~~v~~~~~~~~~~ 504 (742)
+ .+.+..++..+.+.-. .+.+.-..+...+..++....+ .......+. ..... ..........+--..
T Consensus 1260 ~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~---~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~ 1334 (1780)
T PLN03076 1260 TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE---GDLGSSSRN--KDKEAPPSSPQSGKDGKQESGE 1334 (1780)
T ss_pred cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHh---ccccccccc--cccccccccccccccccccccc
Confidence 1 2344455544444332 1233323333333333222110 000000000 00000 000000000000000
Q ss_pred hcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhh-----HH-HHHHHHHHhcCC-------
Q 004614 505 NTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY-----HH-VLLESIMKEVPG------- 571 (742)
Q Consensus 505 ~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~-----~~-~l~p~L~~~l~~------- 571 (742)
+.. .......+++ ++.-+.....|..-+||..|..+|=++....|..|.+. +. .++|++ ..++.
T Consensus 1335 ~~~-~~~~~~lW~p-LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIF-d~l~~~~~~~~~ 1411 (1780)
T PLN03076 1335 FTD-KDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIF-DYVRHAIDPSGG 1411 (1780)
T ss_pred ccc-chhHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH-HHHHHhhccccc
Confidence 000 0011122222 33333344557889999999999999999999988761 34 444543 22210
Q ss_pred -----------------CChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH
Q 004614 572 -----------------RLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIK 634 (742)
Q Consensus 572 -----------------r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~ 634 (742)
..|- ++....+|..++.-+..++.. ...+.+.++..+.......|...-+.+..||-.++.
T Consensus 1412 ~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~-L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1412 DEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPT-VNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred cccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 1132 466666666665544433321 123677888888888888899999999999999998
Q ss_pred HcCC
Q 004614 635 AFRD 638 (742)
Q Consensus 635 ~~~~ 638 (742)
.-+.
T Consensus 1490 ~ng~ 1493 (1780)
T PLN03076 1490 NAGH 1493 (1780)
T ss_pred Hhhc
Confidence 8754
No 225
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.10 E-value=56 Score=33.08 Aligned_cols=202 Identities=9% Similarity=0.022 Sum_probs=98.3
Q ss_pred HhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhchhhhhhhhhhhhhH
Q 004614 404 LFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDD-KNSQISCAILLKSYSSVASDVLSGYHAVIVPV 482 (742)
Q Consensus 404 Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~d-~~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~ 482 (742)
++..+.+..++.+...+..++..++..-. .....++.-+..+-..+ ...+..+...+..+-+..+..| +++..++-.
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~ 82 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLL 82 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHH
Confidence 33334356677777777777777775553 33333333333333211 1112233344444444334344 333333322
Q ss_pred -hhHhh---cCCchHHHHHHH--HHHHHhcCCChhhHHhhHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHhCcchh
Q 004614 483 -IFISR---FEDDKYVSDLFE--ELWEENTSGDRVTLQLYLGEIVSLICEGI-ASSSWSSKRKSAKAICKLGEILGESLS 555 (742)
Q Consensus 483 -l~~~~---~d~~~~v~~~~~--~~~~~~~~~~~~~i~~yl~~il~~l~~~L-~~~sw~vR~~Aa~~lg~La~~~g~~~~ 555 (742)
..... .+.+......+. ....+++..-| .+-.++++.+...+ .+.+...+..|..+|..++..---+
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p----~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-- 156 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICCSRP----DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-- 156 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHHhCh----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc--
Confidence 12111 111211111111 11122222212 24566777777888 6777777888888888888542223
Q ss_pred hhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccC--cCCCCchHHHHHHHHHHHhhhC
Q 004614 556 NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS--AEDPTTPFAIVDMVSSACRKKI 618 (742)
Q Consensus 556 ~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~--~~~~~~~~~iv~~l~~~~~~~~ 618 (742)
+...|-.+.+.+. -+.|-.++++|.+++.-.+.+-. .+++.+...++..+.+-...++
T Consensus 157 --~~s~w~vl~~~l~---~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 157 --FYSAWKVLQKKLS---LDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred --HHHHHHHHHHhcC---CccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 3446666767662 23456677777777654432221 1234455666666666554444
No 226
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=82.96 E-value=11 Score=38.89 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=68.8
Q ss_pred HHHHHHHHhccc-cch--hhhhhHH--hhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHH--------HHHHHHHHHH
Q 004614 75 LIYKFMDLANYQ-VSL--NSKRGAA--FGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKN--------VQDAMAHIWK 141 (742)
Q Consensus 75 lv~~fm~l~~~~-~~w--~~r~~A~--~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~--------VR~a~~~iw~ 141 (742)
.....+....+. ..- ..||+|- |.+.+|+......-++.++..+..|+..-.+|... -|=-+.+|.+
T Consensus 143 WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr 222 (255)
T PF10350_consen 143 WLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILR 222 (255)
T ss_pred HHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHH
Confidence 455666655554 322 5788665 66777766443222277888999999877777653 3334688999
Q ss_pred HhccCCH--HHHHHHHHHHHHHHHHhhCCCChh
Q 004614 142 SLVADPK--RTIDEHLDLIFDDLLIQSGSRLWR 172 (742)
Q Consensus 142 ~lv~d~~--~~i~~~~~~il~~Ll~~l~~~~wr 172 (742)
+++.|.+ ..+..|+.+.+.--+.++.++.|.
T Consensus 223 ~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa 255 (255)
T PF10350_consen 223 AIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA 255 (255)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 9998764 567889999999999999999993
No 227
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=82.11 E-value=77 Score=33.99 Aligned_cols=203 Identities=14% Similarity=0.210 Sum_probs=133.0
Q ss_pred HHHHhhhcCChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHh-hh-------hhchhhhhhhHHHhhhcCCCCHHHHH
Q 004614 63 LCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA-GD-------ALKPHLRLLIPKLVRFQYDPDKNVQD 134 (742)
Q Consensus 63 l~~lA~~~~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~-~~-------~l~~~l~~lip~L~~~~~Dp~~~VR~ 134 (742)
+..|++++-..++++.++.....-. +.+||.++.-|+.+.... +. .+..+-+.++..|+++..+|+. --
T Consensus 65 v~qLa~Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di--al 141 (335)
T PF08569_consen 65 VAQLAQEIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI--AL 141 (335)
T ss_dssp HHHHHHHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT--HH
T ss_pred HHHHHHHHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc--cc
Confidence 6788888888899988887666653 899999998888877653 22 2333337899999998887764 23
Q ss_pred HHHHHHHHhccCCHHHHHHH--HHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCC---chhhhhHHHHHHHHHHHHcc
Q 004614 135 AMAHIWKSLVADPKRTIDEH--LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK---FDQVGKHLRRIWTAAFRAMD 209 (742)
Q Consensus 135 a~~~iw~~lv~d~~~~i~~~--~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~---~~~l~~~L~~i~~~l~~~l~ 209 (742)
....+.+-.+... .+.++ .++.+..++..+..+...+-.-|...+-+++.... .+.+..+++..+...-.++.
T Consensus 142 ~~g~mlRec~k~e--~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 142 NCGDMLRECIKHE--SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp HHHHHHHHHTTSH--HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHhhH--HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3455555555442 22222 13456667888888888888888888888876542 34677778888888888888
Q ss_pred CCcHHHHHHHHHHHHHHH------HHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcC
Q 004614 210 DIKETVRTAGDKLCRSVT------SLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG 283 (742)
Q Consensus 210 D~~~~VR~aA~~~~~~l~------~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g 283 (742)
...-.+|..+.+++..+. .+..+..+ ..+.+..+|..| .+.++.+|--|..++--.+....
T Consensus 220 s~NYvtkrqslkLL~ellldr~n~~vm~~yi~--------~~~nLkl~M~lL-----~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 220 SSNYVTKRQSLKLLGELLLDRSNFNVMTRYIS--------SPENLKLMMNLL-----RDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT---------HHHHHHHHHHT-----T-S-HHHHHHHHHHHHHHHH-SS
T ss_pred CCCeEeehhhHHHHHHHHHchhHHHHHHHHHC--------CHHHHHHHHHHh-----cCcchhhhHHHHHHHHHHHhCCC
Confidence 888889999876666542 22233332 234566666654 44678888888888866655543
No 228
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=81.70 E-value=77 Score=33.75 Aligned_cols=145 Identities=17% Similarity=0.274 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH-HHHHhccCCchhhhhHHHHHHHHHHHH
Q 004614 132 VQDAMAHIWKSLVA---DPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS-LADIIQGRKFDQVGKHLRRIWTAAFRA 207 (742)
Q Consensus 132 VR~a~~~iw~~lv~---d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~A-l~~L~~~~~~~~l~~~L~~i~~~l~~~ 207 (742)
||+.+..+....+. |.....+...+++++.++.--.+..+..|++-... ++.++.... +.+.++++.|+..+|..
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~-~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLG-ELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHG-GGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHH
Confidence 44444444444443 33334455567777766665555566677765443 333333222 34455666666655553
Q ss_pred ----c-cC--CcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004614 208 ----M-DD--IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (742)
Q Consensus 208 ----l-~D--~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~ 280 (742)
. +| .-|..|..=.++++++...|...+-. -..+....++-.+.- |+.++..++...+++++..+.+
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~------lp~~~f~~~idsi~w-g~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQ------LPPEQFKLVIDSIVW-GFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHH------S-HHHHHHHHHHHHH-HHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHc------CCHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHH
Confidence 2 23 35889999888888887766433211 022344455555443 6777889999999999998887
Q ss_pred hcCc
Q 004614 281 GAGI 284 (742)
Q Consensus 281 ~~g~ 284 (742)
....
T Consensus 195 ~~~~ 198 (319)
T PF08767_consen 195 NVSK 198 (319)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 229
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=81.19 E-value=14 Score=35.11 Aligned_cols=125 Identities=17% Similarity=0.274 Sum_probs=72.2
Q ss_pred chHHHHHHHhhhcCChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhc---hh------h-hhhhHHHhhhcCC
Q 004614 58 STYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK---PH------L-RLLIPKLVRFQYD 127 (742)
Q Consensus 58 ~tyk~l~~lA~~~~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~---~~------l-~~lip~L~~~~~D 127 (742)
.-+++||+|+...++++--+.++. + ...+|.=+.--+..+.+..+..+. .+ + ..+.|.|++....
T Consensus 10 ~vf~~Lc~L~~~~~~~~~~~~~~~---~--~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~ 84 (168)
T PF12783_consen 10 LVFRDLCSLSSKPSDPGNSPDFLS---H--DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSS 84 (168)
T ss_pred HHHHHHHHHhCCCCCCCCCcchhh---h--hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 346788888865555533333333 1 123333333334446666666555 11 1 3688888887777
Q ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh-hCCC--ChhHHHHHHHHHHHHhcc
Q 004614 128 PDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQ-SGSR--LWRSREASCLSLADIIQG 187 (742)
Q Consensus 128 p~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~-l~~~--~wrvR~aa~~Al~~L~~~ 187 (742)
+++.|=..+.++...+...........++.++..++.. +.++ .+..|+.+..++..+.+.
T Consensus 85 ~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 85 SDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 77777767766666666444444444445555555552 2222 235899999999998864
No 230
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=80.99 E-value=3.1 Score=29.20 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHh
Q 004614 158 IFDDLLIQSGSRLWRSREASCLSLADII 185 (742)
Q Consensus 158 il~~Ll~~l~~~~wrvR~aa~~Al~~L~ 185 (742)
.++.|+..+.+.+.++|+.||+||++|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5666888888999999999999999985
No 231
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.43 E-value=12 Score=38.80 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=46.2
Q ss_pred hhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcc
Q 004614 123 RFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (742)
Q Consensus 123 ~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~ 187 (742)
-+.+||+|.||.++....-.+...+-....++-...++.+.+.+.+.+. .+. |..|++++.+.
T Consensus 10 ~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~-a~~alVnlsq~ 72 (353)
T KOG2973|consen 10 ELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEP-AATALVNLSQK 72 (353)
T ss_pred HHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccH-HHHHHHHHHhh
Confidence 3459999999999877666666554456666777888888888888766 444 45678888765
No 232
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=80.03 E-value=29 Score=32.20 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=77.1
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHH
Q 004614 526 EGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFA 605 (742)
Q Consensus 526 ~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~ 605 (742)
..+..++|.+-- -|.|++..-. ..-...+-.|.+++..+...+-...|.-|-.++++||..++.+- -...
T Consensus 11 e~l~~~dw~~il----~icD~I~~~~----~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev--ask~ 80 (144)
T cd03568 11 EKLTSENWGLIL----DVCDKVKSDE----NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV--ASRD 80 (144)
T ss_pred ccCCCcCHHHHH----HHHHHHhcCC----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH--hhHH
Confidence 345567886543 2333333221 12356778888999887777777788888889999997664210 0234
Q ss_pred HHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhhhcCc
Q 004614 606 IVDMVSSACRK-KIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGST 656 (742)
Q Consensus 606 iv~~l~~~~~~-~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~~~~~ 656 (742)
+++.+.+.+.+ .+..||...+..+......++++.-...+...-..++..+
T Consensus 81 Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G 132 (144)
T cd03568 81 FTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEG 132 (144)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcC
Confidence 44555555544 6889999999999999999986432333444444444443
No 233
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=79.71 E-value=2.9 Score=29.79 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=26.3
Q ss_pred hHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHH
Q 004614 98 GFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHI 139 (742)
Q Consensus 98 ~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~i 139 (742)
+++.|.+.-...+. -+.+...+.+.+.|++|.||+++.+.
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34555554333332 12567777778899999999998764
No 234
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=78.65 E-value=28 Score=33.95 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=58.0
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHH
Q 004614 119 PKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR 198 (742)
Q Consensus 119 p~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~ 198 (742)
+.+..+..|+++-+|++..-++-....+ +.+.+.+++.+...+.|++..||.+..++|.++....+ +...+|+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~-~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP-ERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH-HHHHHHHH
Confidence 6788889999999999986666443321 34678888888888888999999999999999876633 55555554
Q ss_pred HH
Q 004614 199 RI 200 (742)
Q Consensus 199 ~i 200 (742)
..
T Consensus 182 ~~ 183 (197)
T cd06561 182 KN 183 (197)
T ss_pred HH
Confidence 44
No 235
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.18 E-value=29 Score=32.18 Aligned_cols=118 Identities=13% Similarity=0.129 Sum_probs=74.0
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcC--CCCch
Q 004614 526 EGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTP 603 (742)
Q Consensus 526 ~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~--~~~~~ 603 (742)
..+.+++|..--. |.|++..-.. .-...+-.|.++++.+...+-.-.|.-|-.++++|+..++.+ ...|+
T Consensus 15 ~~l~~~dw~~ile----icD~In~~~~----~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl 86 (142)
T cd03569 15 ELLGEPDLASILE----ICDMIRSKDV----QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM 86 (142)
T ss_pred cccCccCHHHHHH----HHHHHhCCCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH
Confidence 4456677876442 3444432211 234677788889988777777777888888999998755421 12344
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhhhc
Q 004614 604 FAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCG 654 (742)
Q Consensus 604 ~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~~~ 654 (742)
..+++.+.+ .....||..++..+......++++.-...+...-..++.
T Consensus 87 ~~l~~l~~~---~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~ 134 (142)
T cd03569 87 DELKDLIKT---TKNEEVRQKILELIQAWALAFRNKPQLKYVVDTYQILKA 134 (142)
T ss_pred HHHHHHHcc---cCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 555544433 457899999999999999999764222333333334433
No 236
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=77.19 E-value=28 Score=36.39 Aligned_cols=183 Identities=12% Similarity=0.132 Sum_probs=104.2
Q ss_pred CchhHHH---HHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCCh----hhHHhh-HHHHH
Q 004614 450 DKNSQIS---CAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR----VTLQLY-LGEIV 521 (742)
Q Consensus 450 d~~~r~~---a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~----~~i~~y-l~~il 521 (742)
+++.|.. +..++..+.+.... ....+.++|.+..+...++..|+.+......-++..|. ..+... -.+|+
T Consensus 53 NenhrekttlcVscLERLfkakeg--ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeil 130 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEIL 130 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccc--hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHH
Confidence 4555554 33445555443211 12346667777777666667777654433322222221 122222 25889
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhH-HHHHHHH-HHhcCCCChh-hHHHHHHHHHHHHhhcccccCcC
Q 004614 522 SLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH-HVLLESI-MKEVPGRLWE-GKDALLYAIGSISTSCHKDISAE 598 (742)
Q Consensus 522 ~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~-~~l~p~L-~~~l~~r~~~-~ke~vl~aL~~l~~~~~~~~~~~ 598 (742)
++++.++...+-+|-.+|.+.|..++..- ..+...+ ..++..+ .+.+..|..+ .|-.|++-+..+..-.++....
T Consensus 131 klildcIggeddeVAkAAiesikrialfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesane- 208 (524)
T KOG4413|consen 131 KLILDCIGGEDDEVAKAAIESIKRIALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANE- 208 (524)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhH-
Confidence 99999999999999999999999888531 1111110 1111111 2333333333 5667777777766544332210
Q ss_pred CCCchHHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHcCC
Q 004614 599 DPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 599 ~~~~~~~iv~~l~~~~~~-~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
--..-++..+.++++. ++.-||-.++.....++..-.+
T Consensus 209 --ckkSGLldlLeaElkGteDtLVianciElvteLaeteHg 247 (524)
T KOG4413|consen 209 --CKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG 247 (524)
T ss_pred --hhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh
Confidence 1145677788888887 6777888888888887776544
No 237
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=77.10 E-value=23 Score=34.83 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=58.1
Q ss_pred hhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 004614 97 FGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREA 176 (742)
Q Consensus 97 ~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~a 176 (742)
--+++..++.+..-.|++..++-.|-..+.+++...|+.+.++.++-+.-. -.+.+-.++|.-+.. .+ ..+.+
T Consensus 22 ~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~am---Gpe~vL~~lPLnl~~-~~---~~~~~ 94 (198)
T PF08161_consen 22 NVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAM---GPEQVLSILPLNLDN-AD---DSQPG 94 (198)
T ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHC---CHHHHHHHCCCCccC-CC---cCCcc
Confidence 344556677777677888888888888899999888888888887766421 123333444433332 11 11222
Q ss_pred HHHHHHHHhccCCchhhhhHHHHHHHHHHH
Q 004614 177 SCLSLADIIQGRKFDQVGKHLRRIWTAAFR 206 (742)
Q Consensus 177 a~~Al~~L~~~~~~~~l~~~L~~i~~~l~~ 206 (742)
=.|-+.-|=+......+.-|..+++|...+
T Consensus 95 raWLLPlLr~~i~~~~L~fF~~~~lPla~~ 124 (198)
T PF08161_consen 95 RAWLLPLLRDHIRNASLSFFVEEFLPLARR 124 (198)
T ss_pred cchhHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 234443333332324455555566665543
No 238
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=76.07 E-value=1.1e+02 Score=33.85 Aligned_cols=93 Identities=12% Similarity=0.142 Sum_probs=59.0
Q ss_pred HHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhc
Q 004614 179 LSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE 258 (742)
Q Consensus 179 ~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~ 258 (742)
.-+.++++..+.+++.+....++..+-++++..+-.|.+.|.....+- ..+..... ....++..+.|.|...
T Consensus 277 ~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~--~~~~li~~------~~~~i~p~i~~~L~~~ 348 (409)
T PF01603_consen 277 NELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE--YFLSLISQ------NSRVILPIIFPALYRN 348 (409)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH--HHHHHHHC------THHHHHHHHHHHHSST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH--HHHHHHHh------ChHHHHHHHHHHHHHH
Confidence 346667777787889999999999999999999999988886544321 01112221 1334666667766531
Q ss_pred CCCC-ChHHHHHHHHHHHHHHHH
Q 004614 259 GILS-KVDSISKASIGVVMKLVK 280 (742)
Q Consensus 259 gl~~-~~~~vr~~a~~~L~~la~ 280 (742)
..+ =++.||..+..++.-+.+
T Consensus 349 -~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 349 -SKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp -TSS-SSTTHHHHHHHHHHHHHT
T ss_pred -HHHHhhHHHHHHHHHHHHHHHH
Confidence 112 146788888888765543
No 239
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.71 E-value=1.9e+02 Score=34.96 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=73.7
Q ss_pred hhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHhhC
Q 004614 93 RGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVA-----DPKRTIDEHLDLIFDDLLIQSG 167 (742)
Q Consensus 93 ~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~-----d~~~~i~~~~~~il~~Ll~~l~ 167 (742)
.-+..++|.|++--|+.+.++|--.+=.++.-.-+|++.|++.+..|.-.+.. .++..++++.+-++..+-..++
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~ 645 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLN 645 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhc
Confidence 45667888888888888887765433334445689999999998776666553 2456788888888877776665
Q ss_pred CC--ChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCc
Q 004614 168 SR--LWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK 212 (742)
Q Consensus 168 ~~--~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~ 212 (742)
.. .+|+-. ..++.-...+ -...||+.+++..++..+|-.+
T Consensus 646 ~~~~s~~~~~--Vl~vVl~~s~---~~~i~~l~dvvq~i~~~lD~yH 687 (1014)
T KOG4524|consen 646 TSGMSPRVPD--VLMVVLQYSD---YGTIPNLKDVVQTIFKLLDYYH 687 (1014)
T ss_pred cCCCCchhHH--HHHHHhhcCC---CCchhhHHHHHHHHHHHHHHhc
Confidence 22 233322 2222111122 2356788888888888877544
No 240
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=75.57 E-value=23 Score=32.47 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=70.6
Q ss_pred HHHHHHhhhc---CChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhh----------------hhchhhhhhhHHH
Q 004614 61 KELCNLANEM---GQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGD----------------ALKPHLRLLIPKL 121 (742)
Q Consensus 61 k~l~~lA~~~---~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~----------------~l~~~l~~lip~L 121 (742)
..+..++... +||+++..++++.+++. ...+....-|..+.+...+ .+....+.++..+
T Consensus 10 ~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~--~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l 87 (148)
T PF08389_consen 10 QVLAEIAKRDWPQQWPDFLEDLLQLLQSSP--QHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEIL 87 (148)
T ss_dssp HHHHHHHHHHTTTTSTTHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChhhCchHHHHHHHHhccch--hHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566554 78999999999887652 4444555555555555432 1233344566666
Q ss_pred hhhcCCCC----HHHHHHHHHHHHHhccCCHHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHH
Q 004614 122 VRFQYDPD----KNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSL 181 (742)
Q Consensus 122 ~~~~~Dp~----~~VR~a~~~iw~~lv~d~~~~i~~~~-~~il~~Ll~~l~~~~wrvR~aa~~Al 181 (742)
++++.... +.+...+..++++.+...+ .+... .++++.++..++++ ..|++||..|
T Consensus 88 ~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 88 SQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 65555433 7888888889988887432 22222 24788888888665 4478887653
No 241
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.49 E-value=1.7e+02 Score=34.18 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=61.4
Q ss_pred hhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHH--HHHHHHHHHHHHHhhCCCChhHH
Q 004614 97 FGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTI--DEHLDLIFDDLLIQSGSRLWRSR 174 (742)
Q Consensus 97 ~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i--~~~~~~il~~Ll~~l~~~~wrvR 174 (742)
.||-.|..-.+..|..-+..=+|||++. .|..+.||+.+.-|+=.|...+++.+ .+|.+.|+ ..++|.+.+|-
T Consensus 130 LAL~~I~niG~re~~ea~~~DI~KlLvS-~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv----~LL~D~~~gv~ 204 (938)
T KOG1077|consen 130 LALHCIANIGSREMAEAFADDIPKLLVS-GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIV----HLLDDQHMGVV 204 (938)
T ss_pred HHHHHHHhhccHhHHHHhhhhhHHHHhC-CcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHH----HHhCcccccee
Confidence 4555555544455555555566777643 56677888887666655554455544 56777744 45667777777
Q ss_pred HHHHHHHHHHhccCCchhhhhHHHHHHHHHHH
Q 004614 175 EASCLSLADIIQGRKFDQVGKHLRRIWTAAFR 206 (742)
Q Consensus 175 ~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~ 206 (742)
-++..-+.-|+...+ +.+...+.--+..+.+
T Consensus 205 ta~~sLi~~lvk~~p-~~yk~~~~~avs~L~r 235 (938)
T KOG1077|consen 205 TAATSLIEALVKKNP-ESYKTCLPLAVSRLSR 235 (938)
T ss_pred eehHHHHHHHHHcCC-HHHhhhHHHHHHHHHH
Confidence 777666655555443 5555554444444433
No 242
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.20 E-value=6 Score=38.62 Aligned_cols=85 Identities=16% Similarity=0.200 Sum_probs=61.0
Q ss_pred hhhhhHhhHhhcCCchH---H-HHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh--
Q 004614 477 AVIVPVIFISRFEDDKY---V-SDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL-- 550 (742)
Q Consensus 477 ~~vlP~l~~~~~d~~~~---v-~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~-- 550 (742)
...+|.++.++.+.+-. + ++-+.+++.. ++ ..+-+-++.++.-+...|...+-++...+.++|..|+...
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~--~g--~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~ 188 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLA--GG--EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGC 188 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHh--cc--cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc
Confidence 33567777776553222 2 2233344322 22 4566788888888999999999999999999999998764
Q ss_pred -CcchhhhHHHHHHHH
Q 004614 551 -GESLSNYHHVLLESI 565 (742)
Q Consensus 551 -g~~~~~~~~~l~p~L 565 (742)
|..+.|||.|++|.+
T Consensus 189 vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 189 VGAALVPFYRQLLPVL 204 (262)
T ss_pred cchhhhhHHHHhhhhh
Confidence 568999999999997
No 243
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.19 E-value=6.9 Score=38.20 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=70.0
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcC
Q 004614 519 EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE 598 (742)
Q Consensus 519 ~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~ 598 (742)
..++++.++|.+.+..-|=-|-..+-||....|+.+.|.+++++..|..+|..|.-+++...|+.|..++...+ -+-+.
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~-~vG~a 192 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG-CVGAA 192 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-ccchh
Confidence 35567778888877778888888999999999999999999999999999998887888888888887776433 11111
Q ss_pred CCCchHHHHHHHH
Q 004614 599 DPTTPFAIVDMVS 611 (742)
Q Consensus 599 ~~~~~~~iv~~l~ 611 (742)
.-||-.++++.+.
T Consensus 193 LVPfYRQlLp~~n 205 (262)
T KOG3961|consen 193 LVPFYRQLLPVLN 205 (262)
T ss_pred hhhHHHHhhhhhh
Confidence 2355666666554
No 244
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=74.85 E-value=44 Score=30.01 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHH---HHHH---c-----cCCcHHHHHHHHHH
Q 004614 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTA---AFRA---M-----DDIKETVRTAGDKL 222 (742)
Q Consensus 154 ~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~---l~~~---l-----~D~~~~VR~aA~~~ 222 (742)
-+..|++.|.+.+++++++|+.-|..-|.-+++..+ +.+...+..-... +... . +|....||.+|..+
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~-~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN-SDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC-HHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 367889999999999999998888888888887655 4544433333322 2211 1 23456789988777
Q ss_pred HHHH
Q 004614 223 CRSV 226 (742)
Q Consensus 223 ~~~l 226 (742)
+..+
T Consensus 114 ~~~i 117 (122)
T cd03572 114 IKAI 117 (122)
T ss_pred HHHH
Confidence 6654
No 245
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=74.02 E-value=1.4e+02 Score=32.40 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=37.9
Q ss_pred CCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHh
Q 004614 371 GLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLK 429 (742)
Q Consensus 371 ~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~ 429 (742)
+...++-++++|+.+...|+ ...+.-+.+-+..+ +|.+..||+++...+-.+|+
T Consensus 37 ~~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~-ed~d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLC-EDDDVGIRRQAIKGLPLFCK 90 (460)
T ss_pred chHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhccc-cccchhhHHHHHhccchhcc
Confidence 34566778888876665554 24566677777777 68888999998877766654
No 246
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=73.91 E-value=26 Score=30.39 Aligned_cols=60 Identities=15% Similarity=0.068 Sum_probs=50.4
Q ss_pred hhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHHHHHHHHhc
Q 004614 510 RVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVLLESIMKEV 569 (742)
Q Consensus 510 ~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~-~~~~~~~l~p~L~~~l 569 (742)
+..+.+|.+.++-.+...+++-+.++|.-|.+.|.-+.+..|+. +..+..++++-...-+
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll 62 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLL 62 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999887 5556666666666555
No 247
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=73.37 E-value=60 Score=33.18 Aligned_cols=233 Identities=17% Similarity=0.213 Sum_probs=122.1
Q ss_pred ceeecCChhHHHHHHHHHHHHhccCCccccccccCCCcccccC-C-cccCCCCCCCcch-HHHHHHHhhhcCChhHHHHH
Q 004614 3 VVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQE-G-AIGEGLGGGKLST-YKELCNLANEMGQPDLIYKF 79 (742)
Q Consensus 3 ~~y~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~~f~~-g-~~~~~~~~~~~~t-yk~l~~lA~~~~~p~lv~~f 79 (742)
+|.|+.+++.|+.=+..|.+.--. |+. | .|=. .-|.+++ .+||.+.--.+..|.+-.
T Consensus 2 ~i~~L~~~~~Re~Al~eLsk~r~~----------------~~~La~~LW~--s~G~i~~LLqEIisiYp~l~~~~Lt~-- 61 (262)
T PF04078_consen 2 LILDLCNPETRENALLELSKKRES----------------FPDLAPLLWH--SFGTIAALLQEIISIYPALSPPNLTA-- 61 (262)
T ss_dssp HHHHTSSHHHHHHHHHHHHHTCCC-----------------TTHHHHHHT--STTHHHHHHHHHHGGGGGTTTT---H--
T ss_pred hhHHhcCcchHHHHHHHHHHhhhc----------------ccchhHHHHc--CCChHHHHHHHHHHHcccCCCcccCH--
Confidence 577889999999888887642211 211 0 0100 1122222 356654444444332211
Q ss_pred HHHhccccchhhhhhHHhhHHH-HHHHhh---hhhchhhh-hhhHHHhhhc-CCCCHHHHHHHHHHHHHhccCCHHHHHH
Q 004614 80 MDLANYQVSLNSKRGAAFGFSK-IAKQAG---DALKPHLR-LLIPKLVRFQ-YDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (742)
Q Consensus 80 m~l~~~~~~w~~r~~A~~~l~~-i~~~~~---~~l~~~l~-~lip~L~~~~-~Dp~~~VR~a~~~iw~~lv~d~~~~i~~ 153 (742)
.-..|--.+.++-. |+++.. ..++.+++ -++|.|=..- .-|...+|=+...+.+++++.....+-.
T Consensus 62 --------~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~ 133 (262)
T PF04078_consen 62 --------RQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVIS 133 (262)
T ss_dssp --------HHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHH
Confidence 11233344556655 566541 23333333 3555553222 2356889999999999999854344444
Q ss_pred HHH--HHHHHHHHhhCCCChhHHHHHHHHHHHHhcc--------CCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHH
Q 004614 154 HLD--LIFDDLLIQSGSRLWRSREASCLSLADIIQG--------RKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLC 223 (742)
Q Consensus 154 ~~~--~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~--------~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~ 223 (742)
++- +|++.++..|...+--.+..|..-+..++.. ...+.+ ..+..++......+ +++-..+++
T Consensus 134 fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf-~av~~vL~~mV~~l------~~~pS~RLL 206 (262)
T PF04078_consen 134 FLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERF-FAVAMVLNKMVEQL------VKQPSPRLL 206 (262)
T ss_dssp HHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHH-HHHHHHHHHHHHHH------HHS--HHHH
T ss_pred HHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHH-HHHHHHHHHHHHHH------ccCCChhHH
Confidence 543 6888888888766666677777766666642 122222 22333333333322 223334678
Q ss_pred HHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcC----CCCChHHHHHHHHHHH
Q 004614 224 RSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEG----ILSKVDSISKASIGVV 275 (742)
Q Consensus 224 ~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~g----l~~~~~~vr~~a~~~L 275 (742)
+.+.+.-.|+++.. .+.+.+...+|..+..| +..+++.+|.+--+.+
T Consensus 207 KhIIrCYlRLsdnp-----rar~aL~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl 257 (262)
T PF04078_consen 207 KHIIRCYLRLSDNP-----RAREALRQCLPDQLRDGTFSNILKDDPSTKRWLQQLL 257 (262)
T ss_dssp HHHHHHHHHHTTST-----THHHHHHHHS-GGGTSSTTTTGGCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHccCH-----HHHHHHHHhCcHHHhcHHHHHHHhcCHHHHHHHHHHH
Confidence 88877777887654 36778888999876533 2234666666544444
No 248
>PF05536 Neurochondrin: Neurochondrin
Probab=73.23 E-value=1.3e+02 Score=34.73 Aligned_cols=178 Identities=15% Similarity=0.100 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhchhhh--hhhhhhhhhHhhHhhcCCch-HHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhccCCC
Q 004614 457 CAILLKSYSSVASDVL--SGYHAVIVPVIFISRFEDDK-YVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSS 532 (742)
Q Consensus 457 a~~~l~~i~~~~~~~~--~~~~~~vlP~l~~~~~d~~~-~v~~~~~~~~~~~~~~~~~~i~~yl-~~il~~l~~~L~~~s 532 (742)
+..++.+++. .+.+ .+-+-.-+|.+.......++ ++....-+++..++.. +.+-+..+ ...++.+.+.+.+ +
T Consensus 77 avsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~-~ 152 (543)
T PF05536_consen 77 AVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN-Q 152 (543)
T ss_pred HHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh-C
Confidence 3355555554 2222 23334456766655443333 4333333555555433 22222221 2233333344333 4
Q ss_pred HHHHHHHHHHHHHHHHHhCcch----hhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccc--ccCcCCCCchHHH
Q 004614 533 WSSKRKSAKAICKLGEILGESL----SNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK--DISAEDPTTPFAI 606 (742)
Q Consensus 533 w~vR~~Aa~~lg~La~~~g~~~----~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~--~~~~~~~~~~~~i 606 (742)
...+..|...+..++...+... ...+..+++.+.+.+....-..|-.++.-|+.+...++- ......+...+.+
T Consensus 153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l 232 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDL 232 (543)
T ss_pred cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHH
Confidence 5568888899888888776321 123566777777777655556788899999999887731 1112344567777
Q ss_pred HHHHHHHHhhh-CHHHHHHHHHHHHHHHHHcCC
Q 004614 607 VDMVSSACRKK-IKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 607 v~~l~~~~~~~-~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
.+.+..-+..+ .+..|..++...+.+++.++.
T Consensus 233 ~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 233 RKGLRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 77777776544 789999999999999999874
No 249
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.75 E-value=3.3e+02 Score=35.79 Aligned_cols=218 Identities=11% Similarity=0.080 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhH
Q 004614 174 REASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLP 253 (742)
Q Consensus 174 R~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP 253 (742)
-..+...++.+..+.+......-++..+..+.+...-....|+-.|.. +.++-.. .+.+.+..+...-+.+.+..+.-
T Consensus 801 Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t-~~al~s~-lk~l~e~~~~~~lg~e~v~~~~~ 878 (2067)
T KOG1822|consen 801 IDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVT-WQALLSA-LKYLAEFKGATSLGPEEVRSSAL 878 (2067)
T ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHH-HHHHHHH-HHHHHhcccccccCHHHHHHHHH
Confidence 344555566666665533333333333333443333345556665543 1122111 22223222211112222222221
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhh
Q 004614 254 FLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISI 333 (742)
Q Consensus 254 ~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~ 333 (742)
.++...+.+.++-.|-.+..+++.++...+.. ||+..+...++.-+.+..+...+.-.
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R~gh-------------------- 936 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITRTGH-------------------- 936 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHHHHH--------------------
Confidence 12211345567778888899999999988876 78878888887777655444322110
Q ss_pred ccCCcHHHHHHHHHhhcC----hhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhh
Q 004614 334 AKGSPMWDTLDLCINVVD----TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK 409 (742)
Q Consensus 334 ~~~s~l~~al~~~~~~~d----~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~ 409 (742)
.-+++-+-+|++ .+.+..-+..+....+++.....+.-+...+..++...+..+.-|....+..+...+.
T Consensus 937 ------slalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLl 1010 (2067)
T KOG1822|consen 937 ------SLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLL 1010 (2067)
T ss_pred ------HHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcC
Confidence 113444444443 2334443445555555543323444556666666667777777788888888888876
Q ss_pred cccc--HHHHHHHH
Q 004614 410 EEKS--AAAKRAFA 421 (742)
Q Consensus 410 ~D~~--~~Vr~~~~ 421 (742)
+++. .+|++.+.
T Consensus 1011 s~p~~~~ev~q~~~ 1024 (2067)
T KOG1822|consen 1011 SVPTSHVEVHQCYN 1024 (2067)
T ss_pred CCCcchhhhhhhhc
Confidence 5443 34444443
No 250
>PF05536 Neurochondrin: Neurochondrin
Probab=71.39 E-value=96 Score=35.76 Aligned_cols=142 Identities=10% Similarity=0.024 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHHhCcchhhh-HHHHHHHHHHhcCC
Q 004614 494 VSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSW-SSKRKSAKAICKLGEILGESLSNY-HHVLLESIMKEVPG 571 (742)
Q Consensus 494 v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw-~vR~~Aa~~lg~La~~~g~~~~~~-~~~l~p~L~~~l~~ 571 (742)
-+.+...+...++....-.-.+-+-+-++.+++.+.+.+- .+-.-|..+|..++. ....-... -...+|.|.+.+..
T Consensus 73 ~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 73 YLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh
Confidence 4555566777766532211124445566777777766665 777788888888883 22211111 11234444444433
Q ss_pred CChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcC
Q 004614 572 RLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (742)
Q Consensus 572 r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~ 637 (742)
...+++..+..+..++...+...+.++......+++.+.+........-|-..+..|+.+....+
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~ 216 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSP 216 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCC
Confidence 23468888999888888766545544555667788888888776666778888888888887773
No 251
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=69.46 E-value=2.6e+02 Score=33.67 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=58.4
Q ss_pred hhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCC----HHHHHHH-HHHHHHHHHHhhCCCChhH--HHHHHHHHHHHhcc
Q 004614 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP----KRTIDEH-LDLIFDDLLIQSGSRLWRS--REASCLSLADIIQG 187 (742)
Q Consensus 115 ~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~----~~~i~~~-~~~il~~Ll~~l~~~~wrv--R~aa~~Al~~L~~~ 187 (742)
..++|.++.+.+|+++.+|+=+...|+.+-..+ .+..+.. .+.+... +..++...|.. -..-=.++.-+++.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~-l~~i~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSH-LYRISPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHH-HHHhccCCCChhHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999987652 2333322 2222222 22232222211 11122456666676
Q ss_pred CCchhhhhHHHH-----HHHHHHHHccCC
Q 004614 188 RKFDQVGKHLRR-----IWTAAFRAMDDI 211 (742)
Q Consensus 188 ~~~~~l~~~L~~-----i~~~l~~~l~D~ 211 (742)
.+.+.+..++.. |+..++..+.+.
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~ 226 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSN 226 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcc
Confidence 776777777777 444555555544
No 252
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=68.68 E-value=70 Score=34.39 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccc
Q 004614 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI 595 (742)
Q Consensus 516 yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~ 595 (742)
|-..+...--......+|.+ |-++|..+|... ..-...+..+.+++..+...+-...|.-+.+++.+|+..+
T Consensus 9 ~e~~v~KAT~e~nT~enW~~-------IlDvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~ 80 (462)
T KOG2199|consen 9 FEQDVEKATDEKNTSENWSL-------ILDVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRF 80 (462)
T ss_pred HHHHHHHhcCcccccccHHH-------HHHHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHH
Confidence 33344444445556778976 446666666654 3456788899999999888888888888888999999766
Q ss_pred CcCCCCchHHHHHHHHHHHh-hhCHHHHHHHHHHHHHHHHHcCCCchHHhHHHHHHhhhcC
Q 004614 596 SAEDPTTPFAIVDMVSSACR-KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (742)
Q Consensus 596 ~~~~~~~~~~iv~~l~~~~~-~~~~~~R~~a~~~Lg~l~~~~~~~~~~~~v~~il~~~~~~ 655 (742)
+.+ -....+..-+.+.+. +..+.|+.+--..+....+.+..+.-...+..+..+++..
T Consensus 81 r~E--VsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~klk~~ 139 (462)
T KOG2199|consen 81 RLE--VSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKLKEE 139 (462)
T ss_pred HHH--HhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHc
Confidence 531 012333333444443 3467788888888888888887655555666666666664
No 253
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.12 E-value=2.3e+02 Score=33.02 Aligned_cols=92 Identities=11% Similarity=0.028 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHH
Q 004614 531 SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDM 609 (742)
Q Consensus 531 ~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~-~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~ 609 (742)
++..+..+|..++..+---... |...=+|.|+..+. ...+-.|..++-+|+.+.-.+ ..+....-..
T Consensus 908 sd~~lq~aA~l~L~klMClS~~----fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf--------N~~~de~t~y 975 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFE----FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF--------NTTADEHTHY 975 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHhhCCCcceeccceeeccccceeh--------hhhhHHHHHH
Confidence 4567777777777776542211 34455566666663 344556777777777665422 2457888889
Q ss_pred HHHHHhhhCHHHHHHHHHHHHHHHH
Q 004614 610 VSSACRKKIKKYREAAFSCLEQVIK 634 (742)
Q Consensus 610 l~~~~~~~~~~~R~~a~~~Lg~l~~ 634 (742)
+.+.+.|.+..||+.++-++.-++-
T Consensus 976 LyrrL~De~~~V~rtclmti~fLil 1000 (1128)
T COG5098 976 LYRRLGDEDADVRRTCLMTIHFLIL 1000 (1128)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999988665554
No 254
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=67.92 E-value=2.1e+02 Score=32.06 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHH-HHHhhcC-CchhHHHHHHHHHHHHhhc
Q 004614 417 KRAFASACASVLKYATPSQAQKLIEE-TAALHID-DKNSQISCAILLKSYSSVA 468 (742)
Q Consensus 417 r~~~~~al~~L~~~~~~~~~~~li~~-l~~~~~~-d~~~r~~a~~~l~~i~~~~ 468 (742)
|-.++.|+|.++.+.+++....+... +...+.+ ....|..++.++...++..
T Consensus 104 Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~ 157 (441)
T PF12054_consen 104 RIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKAC 157 (441)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhC
Confidence 45567777777777776666666654 3333322 2345666777777666554
No 255
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=67.69 E-value=47 Score=30.25 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=68.2
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcC--CCCchH
Q 004614 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTPF 604 (742)
Q Consensus 527 ~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~--~~~~~~ 604 (742)
.+.+++|..-- .|.+++..... .-...+..|.++++.+...+....|.-|-.++.+|+..++.+ ...++.
T Consensus 12 ~~~~~D~~~il----~icd~I~~~~~----~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 12 SLEEPDWALNL----ELCDLINLKPN----GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred ccCCccHHHHH----HHHHHHhCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 34567786544 34455543321 235677888889988777788888888889999998655321 112333
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCC
Q 004614 605 AIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (742)
Q Consensus 605 ~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~ 639 (742)
.+++.+... ...+..+|+.++..+......++++
T Consensus 84 ~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNS-PKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 343333322 1347899999999999999999763
No 256
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=67.01 E-value=1.7e+02 Score=30.74 Aligned_cols=165 Identities=12% Similarity=0.191 Sum_probs=103.3
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHh-h--hhhchhh---hhhhHHHhhhcCCCCHHH-
Q 004614 60 YKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA-G--DALKPHL---RLLIPKLVRFQYDPDKNV- 132 (742)
Q Consensus 60 yk~l~~lA~~~~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~-~--~~l~~~l---~~lip~L~~~~~Dp~~~V- 132 (742)
-.....|++++-+.++.+.++.-...- .|++|+-+++-+..+...- | ...-.|+ +++++.|+.++++ .+.+
T Consensus 65 ~e~~~qLtqef~~~~~l~~lI~~l~~l-~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~ia 142 (342)
T KOG1566|consen 65 AEAVAQLTQEFYNADVLSLLIQHLPKL-EFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIA 142 (342)
T ss_pred hHHHHHHHHHHHhCCchHHHHHhhhcc-cchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHH
Confidence 346677888888888877777655444 3888998888888877643 1 1222333 4788888887666 3433
Q ss_pred -------HHH---------------------------------HHHHHHHhccCCHHHH----HHHHHHHHHHHHHh-hC
Q 004614 133 -------QDA---------------------------------MAHIWKSLVADPKRTI----DEHLDLIFDDLLIQ-SG 167 (742)
Q Consensus 133 -------R~a---------------------------------~~~iw~~lv~d~~~~i----~~~~~~il~~Ll~~-l~ 167 (742)
|++ +..+.+.++..-+.++ ..+++.++++.-+. +.
T Consensus 143 L~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~ 222 (342)
T KOG1566|consen 143 LTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLR 222 (342)
T ss_pred HHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhc
Confidence 333 2222233222212222 33444455553333 45
Q ss_pred CCChhHHHHHHHHHHHHhccCCch-hhhhHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 004614 168 SRLWRSREASCLSLADIIQGRKFD-QVGKHLR--RIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (742)
Q Consensus 168 ~~~wrvR~aa~~Al~~L~~~~~~~-~l~~~L~--~i~~~l~~~l~D~~~~VR~aA~~~~~~l 226 (742)
+++.-+|.-+..++|+++.+++.. .+..|.. +-+..+...|.|.....+-.|-...|..
T Consensus 223 s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvf 284 (342)
T KOG1566|consen 223 SENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVF 284 (342)
T ss_pred ccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHH
Confidence 667777888888999999877533 5677776 6667777778888888888876666655
No 257
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=66.26 E-value=26 Score=30.36 Aligned_cols=62 Identities=10% Similarity=-0.022 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHcc
Q 004614 148 KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (742)
Q Consensus 148 ~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~ 209 (742)
+..+.-|++.++..+..+|+.=...+|.-|..-|.-+++.++.+-+..+-..+++..+..+.
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 45678899999999999999999999999999999999988744356666667666666654
No 258
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=65.77 E-value=5.7 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=24.0
Q ss_pred hHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHH
Q 004614 94 GAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (742)
Q Consensus 94 ~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~ 134 (742)
||++|||-|+.+.++. +++..|..|.+|.+..+++
T Consensus 1 gA~lgLGl~~aGs~~~------~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNE------EVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT--H------HHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCCCCH------HHHHHHHHHHHhccccccC
Confidence 6889999998887543 3455555566888877764
No 259
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=65.38 E-value=11 Score=26.23 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 004614 606 IVDMVSSACRKKIKKYREAAFSCLEQVI 633 (742)
Q Consensus 606 iv~~l~~~~~~~~~~~R~~a~~~Lg~l~ 633 (742)
.++.+++.++..+..+|..|+++|+.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677778888899999999999999875
No 260
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=62.94 E-value=12 Score=25.66 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=22.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHh
Q 004614 158 IFDDLLIQSGSRLWRSREASCLSLADII 185 (742)
Q Consensus 158 il~~Ll~~l~~~~wrvR~aa~~Al~~L~ 185 (742)
.++.|+..+.+.++++++.+|++|.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555666666778999999999999875
No 261
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=62.88 E-value=64 Score=29.39 Aligned_cols=62 Identities=13% Similarity=-0.032 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhccCCHH-HHHHHHH-HHHHHHHHhhCC---CChhHHHHHHHHHHHHhcc
Q 004614 126 YDPDKNVQDAMAHIWKSLVADPKR-TIDEHLD-LIFDDLLIQSGS---RLWRSREASCLSLADIIQG 187 (742)
Q Consensus 126 ~Dp~~~VR~a~~~iw~~lv~d~~~-~i~~~~~-~il~~Ll~~l~~---~~wrvR~aa~~Al~~L~~~ 187 (742)
..+||+|+--+..+|..++.|... +..++-. ..+.++...+.+ .+.+||+-+...+......
T Consensus 47 ~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 47 KYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998855 4444433 555555555543 3568888877666555543
No 262
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=62.51 E-value=31 Score=30.82 Aligned_cols=67 Identities=9% Similarity=0.061 Sum_probs=41.5
Q ss_pred HHHHHHHHhh-CCCChhHHHHHHHHHHHHhccCCchhhhhHHH--HHHHHHHHHccCCcHHHHHHHHHHHHH
Q 004614 157 LIFDDLLIQS-GSRLWRSREASCLSLADIIQGRKFDQVGKHLR--RIWTAAFRAMDDIKETVRTAGDKLCRS 225 (742)
Q Consensus 157 ~il~~Ll~~l-~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~--~i~~~l~~~l~D~~~~VR~aA~~~~~~ 225 (742)
.++..|+..+ .+.+..+-.-||.=+|.++...+.- ...+. ..=..++++|.+.++.||..|..++..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3555566665 3345677788899999998865421 11111 223456778999999999999544433
No 263
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=60.98 E-value=9 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC
Q 004614 533 WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP 570 (742)
Q Consensus 533 w~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~ 570 (742)
|.+|+.|+.+||.+.. +...+.|++.++
T Consensus 1 ~~vR~~aa~aLg~~~~----------~~a~~~L~~~l~ 28 (30)
T smart00567 1 PLVRHEAAFALGQLGD----------EEAVPALIKALE 28 (30)
T ss_pred CHHHHHHHHHHHHcCC----------HhHHHHHHHHhc
Confidence 7899999999998732 234555666554
No 264
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=60.81 E-value=13 Score=26.41 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=30.3
Q ss_pred HHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 004614 542 AICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAI 584 (742)
Q Consensus 542 ~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL 584 (742)
+|+.+++.-+.-+ ..+.+...+.+++.+.+..+|+++++.+
T Consensus 2 ~l~~iv~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCcccc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5666666533333 2468999999999999999999998753
No 265
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.96 E-value=3.9e+02 Score=32.51 Aligned_cols=81 Identities=10% Similarity=-0.046 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh---CcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcc
Q 004614 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL---GESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (742)
Q Consensus 516 yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~---g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~ 592 (742)
.+..|+.-....|.+.+-.+|-.|..++..-...+ .+.+.|...+.||.++..+..+.+-.-+.+++.+-.++..++
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 34567777777888999889998888877655433 346778899999999999988877777888999999999898
Q ss_pred cccC
Q 004614 593 KDIS 596 (742)
Q Consensus 593 ~~~~ 596 (742)
+.+.
T Consensus 880 DFv~ 883 (1014)
T KOG4524|consen 880 DFVA 883 (1014)
T ss_pred hHHH
Confidence 8774
No 266
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=57.02 E-value=2.2e+02 Score=28.71 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=67.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHH
Q 004614 529 ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV-PGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIV 607 (742)
Q Consensus 529 ~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l-~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv 607 (742)
.+..|+..-+.|.++.++|...++ +-..+++.+..-+ +......+.-.++++..+++.-- + + .....
T Consensus 94 ~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v--v-----d-~~s~w 161 (234)
T PF12530_consen 94 KDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV--V-----D-FYSAW 161 (234)
T ss_pred CcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh--c-----c-HHHHH
Confidence 356799999999999999998776 3456677777777 55556688899999999985321 1 1 34455
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHcCC
Q 004614 608 DMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 608 ~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
+.+.+.+ +.++|......|..+..-++.
T Consensus 162 ~vl~~~l---~~~~rp~v~~~l~~l~~l~~~ 189 (234)
T PF12530_consen 162 KVLQKKL---SLDYRPLVLKSLCSLFALVPQ 189 (234)
T ss_pred HHHHHhc---CCccchHHHHHHHHHHHHhcc
Confidence 6666655 556777777777777777664
No 267
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=56.79 E-value=2.4e+02 Score=29.07 Aligned_cols=184 Identities=12% Similarity=0.068 Sum_probs=95.5
Q ss_pred HHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccc--------cccHHHHHHHHhhhhhcccc----HHHHHHHH
Q 004614 354 SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI--------KPYTSMLLRLLFPVVKEEKS----AAAKRAFA 421 (742)
Q Consensus 354 ~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l--------~p~~~~ll~~Ll~~l~~D~~----~~Vr~~~~ 421 (742)
.++.+-+-+.+.++++ .+-..+.+++..|+......+ -=.+-..++.++..+ ++.+ .......|
T Consensus 61 ~f~Glq~Ll~KGL~Ss---~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A 136 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSS---STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIA 136 (262)
T ss_pred CchhHHHHHhCccCCC---CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHH
Confidence 4556666666666654 233345666665553322111 111335566666666 3444 13345567
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHH-HhhcCCchhHHHHHHHHHHHHhhchhhh-hhhhhhhhhHhhHhhcCCchHHHHHHH
Q 004614 422 SACASVLKYATPSQAQKLIEETA-ALHIDDKNSQISCAILLKSYSSVASDVL-SGYHAVIVPVIFISRFEDDKYVSDLFE 499 (742)
Q Consensus 422 ~al~~L~~~~~~~~~~~li~~l~-~~~~~d~~~r~~a~~~l~~i~~~~~~~~-~~~~~~vlP~l~~~~~d~~~~v~~~~~ 499 (742)
.+++.+++..+.+.+.+++.... ..| ....+++..++++..+.| .+|-..++-+++.........++...-
T Consensus 137 ~~La~~a~~~~~~~La~il~~ya~~~f-------r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 137 EALAQVAEAQGLPNLARILSSYAKGRF-------RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 88888886655555554433222 222 122355555666555554 344444444443333334445555444
Q ss_pred HHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc
Q 004614 500 ELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE 552 (742)
Q Consensus 500 ~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~ 552 (742)
++...+.+..... ++..++++..+++.++.+-|. .|...+..+....|.
T Consensus 210 ~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 210 QILKVLLPHVDMR-SPHGADLISPLLRLLQTDLWM---EALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHhccccCC-CCcchHHHHHHHHHhCCccHH---HHHHHHHHHHhhccc
Confidence 5555554443211 346677788888888777663 455566655555554
No 268
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=56.77 E-value=1.3e+02 Score=31.86 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCC----CCHHHHHHHHHHHHHhccC
Q 004614 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYD----PDKNVQDAMAHIWKSLVAD 146 (742)
Q Consensus 73 p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~D----p~~~VR~a~~~iw~~lv~d 146 (742)
++...+|+.+.+++ +|.....|++-+..++...+........++++.++.+..+ ++..++..+..+...|...
T Consensus 104 ~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 104 SDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp H--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred chhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 34678888866666 6888889999999988776555544335666777766554 4556777778888887754
No 269
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=55.55 E-value=1.5e+02 Score=27.97 Aligned_cols=63 Identities=8% Similarity=0.054 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCch
Q 004614 129 DKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD 191 (742)
Q Consensus 129 ~~~VR~a~~~iw~~lv~d~~~~i~~~~~-~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~ 191 (742)
++.|.+.+..|...+|.+++..-..... --++.|+..+.+.+.+++..+..-+..|+...+.+
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 5788889999999999877553333222 24566777777777888888888888887776533
No 270
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=55.14 E-value=64 Score=28.73 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=56.4
Q ss_pred chhhhhhhHHHhhhcC-CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccC
Q 004614 111 KPHLRLLIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR 188 (742)
Q Consensus 111 ~~~l~~lip~L~~~~~-Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~ 188 (742)
|.++++++|.+...+. ...+..|-+..-|...|+... .--++.++.+++.++........ ...+..++..+.+..
T Consensus 1 E~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 1 EDILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-PLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred CcHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3578899999999888 888999999999999988532 12355677888888888766544 344666777888766
No 271
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.73 E-value=5.7e+02 Score=32.77 Aligned_cols=192 Identities=16% Similarity=0.137 Sum_probs=113.7
Q ss_pred HHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHhhchhhhhhh
Q 004614 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-----DDKNSQISCAILLKSYSSVASDVLSGY 475 (742)
Q Consensus 401 l~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~-----~d~~~r~~a~~~l~~i~~~~~~~~~~~ 475 (742)
+..+++-+ .-+++..+..+..-++.++.-..-+....+.+.....|. .|...|...-+++..+.......+.+|
T Consensus 43 l~~I~kkL-~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKL-LKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHH-hccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444 347777887777777777765554444444444444441 356678888788888887788889999
Q ss_pred hhhhhhHhhHhhcCCchHHHHHHHHHHHHhcC-CChhh-HHhhHHHHHHHHHhhc-------------------cCCCHH
Q 004614 476 HAVIVPVIFISRFEDDKYVSDLFEELWEENTS-GDRVT-LQLYLGEIVSLICEGI-------------------ASSSWS 534 (742)
Q Consensus 476 ~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~-~~~~~-i~~yl~~il~~l~~~L-------------------~~~sw~ 534 (742)
++.++|..+.+.+|.+-.|.....+...+... .-.++ .-..-++|..++.+.+ +...-+
T Consensus 122 LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~R 201 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQR 201 (1312)
T ss_pred HHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHH
Confidence 99999999988888776664433333222111 10111 1223345555544443 123456
Q ss_pred HHHHHHHHHHHHHHHhCcc--hh---hhHHHHH--HHHHHhcCCCChhhHHHHHHHHHHHHhhccc
Q 004614 535 SKRKSAKAICKLGEILGES--LS---NYHHVLL--ESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (742)
Q Consensus 535 vR~~Aa~~lg~La~~~g~~--~~---~~~~~l~--p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~ 593 (742)
+..++..++..+..-.|.. +. +....+. ..+-+-++++....|...++.+..++.....
T Consensus 202 vi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 202 VISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred HHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 7777888888877666642 21 1122111 1233334666677888888888888776553
No 272
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=54.31 E-value=1.4e+02 Score=27.95 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=47.2
Q ss_pred HHHHHHHhhcChhHHhhHHHHHHHHHHcc------CCCchH-hhHHHHHHHHHHHhcccccccHHHHHHHHhhhhh
Q 004614 341 DTLDLCINVVDTESLDQLVPHLARLVRSG------IGLNTR-VGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK 409 (742)
Q Consensus 341 ~al~~~~~~~d~~~l~~lvp~L~~~l~~~------~~~~~r-~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~ 409 (742)
++.-.++--+.+..+.++.-++.+-...+ .+...| +.--+++..+..++..-+.||.+.+++.....|.
T Consensus 43 ~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~ 118 (153)
T PF08146_consen 43 SAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLK 118 (153)
T ss_pred HHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556667777777777766442 222223 2456677788889999999999999999888883
No 273
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=54.31 E-value=29 Score=29.31 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 004614 172 RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (742)
Q Consensus 172 rvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l 226 (742)
+.|.++..+|+.++.+.+ -.+-+++++++..+-+...| ...||.++.+++..+
T Consensus 4 ~~rH~~VLGL~Alv~a~P-y~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eF 56 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFP-YDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEF 56 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S---SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 568999999999999876 45667999999998887777 445777765555444
No 274
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=53.84 E-value=3.7e+02 Score=30.30 Aligned_cols=243 Identities=16% Similarity=0.127 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHH
Q 004614 172 RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK-ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDI 250 (742)
Q Consensus 172 rvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~-~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~ 250 (742)
..|-.+...+.+.++..+. ..+++||...-..++..+ ..+|.+|.+++.++.+.- +...+ ..-..+...
T Consensus 5 ~~R~~a~~~l~~~i~~~~~----~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~----~~~~~--~~R~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPL----SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQ----DSSSG--LMRAEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCc----hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcc----ccccH--HHHHHHHHH
Confidence 4577777777787777664 567789999988887654 458999988887764421 11000 000012222
Q ss_pred HhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhh------cCcchh
Q 004614 251 VLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAAN------AGIQTE 324 (742)
Q Consensus 251 lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~------~~~~~~ 324 (742)
+ .+. ..++.=..-+++|..|.+ -|.++..+-.++.|.|..-+...-..+ ......+.+ .+....
T Consensus 75 I----~~~----~~~~d~~~~l~aL~~LT~-~Grdi~~~~~~i~~~L~~wl~~~~~~~-~~~r~~~~~~~~~~~~~~~~~ 144 (464)
T PF11864_consen 75 I----SDP----SNDDDFDLRLEALIALTD-NGRDIDFFEYEIGPFLLSWLEPSYQAA-RSARRKAKKSSSSKSKGLSNL 144 (464)
T ss_pred H----hcC----CCchhHHHHHHHHHHHHc-CCcCchhcccchHHHHHHHHHHHHHHH-HHHHHHhhccccccccccccc
Confidence 1 111 111111123445555543 455677777888888877664211000 000000000 000000
Q ss_pred hhhHHhhhhccCCcHHHHHHHHHhh----cChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHH
Q 004614 325 KLENLRISIAKGSPMWDTLDLCINV----VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML 400 (742)
Q Consensus 325 ~~d~~r~~~~~~s~l~~al~~~~~~----~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~l 400 (742)
.-+.. ....+.+-+.+|+++ ++++.+..++..++...+.......-..|..++-.+ .++|.-=...+..+
T Consensus 145 ~~~~~-----~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldai-i~y~~iP~~sl~~~ 218 (464)
T PF11864_consen 145 DNEES-----NLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAI-ITYGDIPSESLSPC 218 (464)
T ss_pred cchhh-----hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH-HHcCcCChHHHHHH
Confidence 00000 001123334445443 466777788888887765432222334666666544 33443222335555
Q ss_pred HHHHhhhhhccccHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHH
Q 004614 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYAT-PSQAQKLIEET 443 (742)
Q Consensus 401 l~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~-~~~~~~li~~l 443 (742)
+..|-.... .....+.+..++..|++.-. ...+..+...+
T Consensus 219 i~vLCsi~~---~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL 259 (464)
T PF11864_consen 219 IEVLCSIVN---SVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL 259 (464)
T ss_pred HHHHhhHhc---ccccchhHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 655555441 12456667777877776433 33444444444
No 275
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.82 E-value=1.4e+02 Score=38.01 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhh
Q 004614 155 LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLC 234 (742)
Q Consensus 155 ~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~ 234 (742)
++.-+..+++.++-++..++.-|.+-+.+++.....+.+.+.+++.....-+..-|....||.+....+..+..-+-+.
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~- 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK- 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH-
Confidence 6666777888888889999999999899998877666655534333333344578999999999877766665443222
Q ss_pred ccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHH
Q 004614 235 DVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVV 275 (742)
Q Consensus 235 ~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L 275 (742)
..+.+..++|+.+. |.-+...+|...|...+
T Consensus 118 ---------lsp~LK~li~~wl~-~~~d~~~~vs~aa~~sf 148 (1312)
T KOG0803|consen 118 ---------LSPFLKSLIPPWLG-GQFDLDYPVSEAAKASF 148 (1312)
T ss_pred ---------hhHHHHhhhhhhhh-eecccchHHHHHHHHHH
Confidence 34567777887663 33333344444444443
No 276
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=53.61 E-value=56 Score=27.70 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=31.3
Q ss_pred CCChhHHHHHHHHHHHHhccCC--chhhhhHHHHHHHHHHHHccCCcH
Q 004614 168 SRLWRSREASCLSLADIIQGRK--FDQVGKHLRRIWTAAFRAMDDIKE 213 (742)
Q Consensus 168 ~~~wrvR~aa~~Al~~L~~~~~--~~~l~~~L~~i~~~l~~~l~D~~~ 213 (742)
+..|..|+-|+.-++.++...+ .+.+.+ .+...+.+.+.|++.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~---Ri~~tl~k~l~d~~~ 61 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQP---RITRTLLKALLDPKK 61 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHH---HHHHHHHHHHcCCCC
Confidence 5589999999999999997544 234444 677777777777654
No 277
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=53.37 E-value=31 Score=29.20 Aligned_cols=56 Identities=5% Similarity=0.076 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhh
Q 004614 534 SSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (742)
Q Consensus 534 ~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~ 590 (742)
..|.++..+|++++.+.+..+.++++.++..|.+...+ ....+..|=++|.++-+.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 35788889999999999988888999999988777764 566888888888888763
No 278
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=53.29 E-value=3.1e+02 Score=29.29 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=48.9
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhc-Ccccc
Q 004614 209 DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGA-GIAIR 287 (742)
Q Consensus 209 ~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~-g~~l~ 287 (742)
++.+|.+..++ +.++..++.+. +.. .-+.++..+. +|+.+....+|+.=+..++++.... .....
T Consensus 33 KE~nE~aL~~~---l~al~~~~~~~-~~~---------~~~~~~~~~~-kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 33 KESNEAALSAL---LSALFKHLFFL-SSE---------LPKKVVDAFK-KGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hhcCHHHHHHH---HHHHHHHHHHh-CcC---------CCHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 56788777776 66666666555 111 1133444444 3888766679999899998888611 12234
Q ss_pred cchhhHHHHHHHhcc
Q 004614 288 PHLSDLVSCMLESLS 302 (742)
Q Consensus 288 p~lp~Lv~~Ll~~ls 302 (742)
+++..++|.|++.+.
T Consensus 99 ~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666666654
No 279
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=52.29 E-value=42 Score=29.98 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=40.0
Q ss_pred HHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHH--HHHHHHhhhhhccccHHHHHHHHHHHHHHH
Q 004614 358 LVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS--MLLRLLFPVVKEEKSAAAKRAFASACASVL 428 (742)
Q Consensus 358 lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~--~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~ 428 (742)
++-.|.+++..+.+..+.+-||.=|+.+++.++.. +..++ ..-..++..+ +++|++||..+..|+..++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm-~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELM-NHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHT-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence 55555566643322234445667778888776532 11222 1223466666 7899999999998887775
No 280
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=51.23 E-value=2.1e+02 Score=26.58 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=58.5
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHhhcc
Q 004614 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCH 592 (742)
Q Consensus 518 ~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~--~~~l~p~L~~~l~~r-~~~~ke~vl~aL~~l~~~~~ 592 (742)
.+.+..+.+-+.+.+..+.-.|...+..+++.+|..|... -..++..|.+.+..+ ...+|+.++.-+-.....++
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 4566777788888999999999999999999999876542 246777777777664 46799999988888777665
No 281
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=50.98 E-value=1.2e+02 Score=27.73 Aligned_cols=77 Identities=9% Similarity=0.040 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCC-Chh---hHHHHHHHHHHHHh
Q 004614 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGR-LWE---GKDALLYAIGSIST 589 (742)
Q Consensus 516 yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~--~~l~p~L~~~l~~r-~~~---~ke~vl~aL~~l~~ 589 (742)
...+.+..+.+.|.+.+..+.-.|...+..++..+|..|...+ ..++..|.+-+..+ ..+ +|+.+++-+.....
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3466788888999999999999999999999999998764421 34566666655332 222 89999988888777
Q ss_pred hcc
Q 004614 590 SCH 592 (742)
Q Consensus 590 ~~~ 592 (742)
.++
T Consensus 119 ~f~ 121 (140)
T PF00790_consen 119 AFK 121 (140)
T ss_dssp HTT
T ss_pred HHC
Confidence 663
No 282
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=50.29 E-value=2.6e+02 Score=28.42 Aligned_cols=122 Identities=17% Similarity=0.093 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHhccCCHHHHHHHHH--HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHH
Q 004614 127 DPDKNVQDAMAHIWKSLVADPKRTIDEHLD--LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAA 204 (742)
Q Consensus 127 Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~--~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l 204 (742)
-|....|=+...++++|+++....+-.++- +|++.++.-|...+--.+..|..-+.-++-.- .=..|.-+.....
T Consensus 136 r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD---~GL~YiCqt~eRF 212 (293)
T KOG3036|consen 136 RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDD---VGLYYICQTAERF 212 (293)
T ss_pred CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhcc---ccHHHHHHhHHHH
Confidence 478889999999999999865444555543 69999999987776666667766666655421 1112222222221
Q ss_pred HH---HccC-CcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHh
Q 004614 205 FR---AMDD-IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLL 256 (742)
Q Consensus 205 ~~---~l~D-~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll 256 (742)
.. ++.+ ....|+.....+++...+.-+|+++.. .+...+...+|-.+
T Consensus 213 ~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp-----rar~aL~~clPd~L 263 (293)
T KOG3036|consen 213 SAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP-----RARAALRSCLPDQL 263 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-----HHHHHHHhhCcchh
Confidence 11 1110 001122333455666666666776543 25567777777544
No 283
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=49.41 E-value=3.2e+02 Score=28.22 Aligned_cols=189 Identities=15% Similarity=0.056 Sum_probs=104.7
Q ss_pred HHHhccccc-ccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHH-----------HHHHHHHHHHHhhcCCc--
Q 004614 386 VQKIGMDIK-PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-----------QAQKLIEETAALHIDDK-- 451 (742)
Q Consensus 386 ~~~~g~~l~-p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~-----------~~~~li~~l~~~~~~d~-- 451 (742)
....+.... .-.+.+.+.+++++. ++.--+....-+..+.....++ .+-..++++...+..+.
T Consensus 50 ~~~~p~~we~~~f~Glq~Ll~KGL~---Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i 126 (262)
T PF14225_consen 50 ESSQPQLWEWGNFEGLQPLLLKGLR---SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPI 126 (262)
T ss_pred HHhCCccccCCCchhHHHHHhCccC---CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccc
Confidence 344444432 334457788888883 2222333344555555543322 12344555555553222
Q ss_pred ---hhHHHHHHHHHHHHhhchhhhhhhhhhhhhHhhHhhcCCch-HHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhh
Q 004614 452 ---NSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDK-YVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEG 527 (742)
Q Consensus 452 ---~~r~~a~~~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d~~~-~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~ 527 (742)
..-..+|..+..+++..+ .+.+..++-..-.+++.+.+ -++....-+-+.+. ..|--+++.++...
T Consensus 127 ~~~~~~~~~A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-------P~~~~~~l~~Ll~l 196 (262)
T PF14225_consen 127 QPDQECIEIAEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-------PDHEFQILTFLLGL 196 (262)
T ss_pred cccHHHHHHHHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-------chhHHHHHHHHHHH
Confidence 122344566666654322 23344455443333442222 24444444433322 23555677788888
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 004614 528 IASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIS 588 (742)
Q Consensus 528 L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~ 588 (742)
|.+...-+|......|..+.....-. .++-++++-.+.+-+++..|..-.+|++....+.
T Consensus 197 L~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 197 LENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDLWMEALEVLDEIVTRS 256 (262)
T ss_pred HhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCccHHHHHHHHHHHHhhc
Confidence 88777778998888888888765433 3467788888889998888876666666655544
No 284
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=49.00 E-value=1e+02 Score=29.90 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=49.4
Q ss_pred hhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCC
Q 004614 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK 189 (742)
Q Consensus 116 ~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~ 189 (742)
+-++.++..+.+++..||.++.++.+.+...- -+ |=...+|.++...+|++..+|.-|-..+.++.+..+
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-Lv---nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQG-LV---NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-CC---ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 34555556679999999999998887766410 00 011356668888889999999999888877765543
No 285
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=48.41 E-value=1.1e+02 Score=27.19 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhh--CHHHHHHHHHHHHHHH
Q 004614 557 YHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVI 633 (742)
Q Consensus 557 ~~~~l~p~L~~~l~-~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~--~~~~R~~a~~~Lg~l~ 633 (742)
+++.++|.+.+.++ .+..+-|.+..--++.++.+. ++.+.+++.+.+.+-.. ...+.+.++.++..+.
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~---------~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~ 73 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV---------PLSDEVLNALMESILKNWTQETVQRQALICLIVLC 73 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc---------CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 57889999999998 555777777776677776654 34455555555443221 1222577899999998
Q ss_pred HHc
Q 004614 634 KAF 636 (742)
Q Consensus 634 ~~~ 636 (742)
+.+
T Consensus 74 q~q 76 (121)
T PF12397_consen 74 QSQ 76 (121)
T ss_pred Hcc
Confidence 877
No 286
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=46.58 E-value=1.3e+02 Score=28.67 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=57.0
Q ss_pred HHHHHHHHHHH-HHhCcchhhhHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHhhcccccCcCCCCc----hHHHHHHH
Q 004614 537 RKSAKAICKLG-EILGESLSNYHHVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCHKDISAEDPTT----PFAIVDMV 610 (742)
Q Consensus 537 ~~Aa~~lg~La-~~~g~~~~~~~~~l~p~L~~~l~~r-~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~----~~~iv~~l 610 (742)
+.|.....+|. ...|+-+.|++..++|...+.|... +.++..=++..-+.++....---...+... .+.+++.+
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv 139 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSV 139 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 44666677777 4456677888999999999999654 355555555554555433220000111123 34444444
Q ss_pred HHHHhhhCH-HHHHHHHHHHHHHHHH
Q 004614 611 SSACRKKIK-KYREAAFSCLEQVIKA 635 (742)
Q Consensus 611 ~~~~~~~~~-~~R~~a~~~Lg~l~~~ 635 (742)
.....+... ..-+.|+.-+..++..
T Consensus 140 ~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 140 KELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 444445554 6777777777666553
No 287
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=46.55 E-value=8e+02 Score=32.07 Aligned_cols=168 Identities=11% Similarity=0.063 Sum_probs=95.1
Q ss_pred HHHHHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh-cCCchhHHHHHH
Q 004614 381 FISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALH-IDDKNSQISCAI 459 (742)
Q Consensus 381 ~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~-~~d~~~r~~a~~ 459 (742)
.+......++..+++|.+.++...-..+ ...++.|+.-.+.....++.....-.-++++..++... .+.+..-.++-+
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll-~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~ 495 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLL-RSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALD 495 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3444455667788899998888877777 46778888877777778888775433445555554443 233333446678
Q ss_pred HHHHHHhhchhhhhhhhhhhhhHhhHhhcC-CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHH
Q 004614 460 LLKSYSSVASDVLSGYHAVIVPVIFISRFE-DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRK 538 (742)
Q Consensus 460 ~l~~i~~~~~~~~~~~~~~vlP~l~~~~~d-~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~ 538 (742)
++..++...+..+.+|...+.+.+ ..+.+ ....+|.+|. +...+.-+.+..-...-+++.-++-+.|.+++.+.|+.
T Consensus 496 vL~~L~~~~~~~l~~fa~~l~giL-D~l~~Ls~~qiR~lf~-il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 496 VLCELAEKNPSELQPFATFLKGIL-DYLDNLSLQQIRKLFD-ILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp HHHHHHHH-HHHHHHTHHHHHGGG-GGGGG--HHHHHHHHH-HHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHH-HHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHH
Confidence 888888877877777765555443 33333 4556777653 22221100000111233555556667777777777776
Q ss_pred HHHHHHHHHHHhC
Q 004614 539 SAKAICKLGEILG 551 (742)
Q Consensus 539 Aa~~lg~La~~~g 551 (742)
..-+.-.++..++
T Consensus 574 GIIGav~~i~~la 586 (1426)
T PF14631_consen 574 GIIGAVMMIKHLA 586 (1426)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHH
Confidence 5544444444433
No 288
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=46.34 E-value=2.4e+02 Score=25.97 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=65.8
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcC--CCCch
Q 004614 526 EGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTP 603 (742)
Q Consensus 526 ~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~--~~~~~ 603 (742)
..+.+++|..-- -|.|++..-+. .-...+-.+.++++.+...+-.-.|.-|-.++++||..++.+ ...|+
T Consensus 12 ~~l~~~dw~~il----eicD~In~~~~----~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (139)
T cd03567 12 PSNREEDWEAIQ----AFCEQINKEPE----GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFL 83 (139)
T ss_pred ccCCCCCHHHHH----HHHHHHHcCCc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHH
Confidence 445567887554 23333332221 124566778888888877776777777788899998765421 12234
Q ss_pred HHHHHHHHHHH--hhhCHHHHHHHHHHHHHHHHHcCC
Q 004614 604 FAIVDMVSSAC--RKKIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 604 ~~iv~~l~~~~--~~~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
..+++.+..-- +.....||...+..+......++.
T Consensus 84 ~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 84 NELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 44444442110 124689999999999999999974
No 289
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=46.28 E-value=1.4e+02 Score=31.52 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=30.2
Q ss_pred hCHHHHHHH--HHHHHHHHHHcCCCchHHhHHHHHHhhhcCcc
Q 004614 617 KIKKYREAA--FSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTA 657 (742)
Q Consensus 617 ~~~~~R~~a--~~~Lg~l~~~~~~~~~~~~v~~il~~~~~~~~ 657 (742)
.+.-.|.++ -+++..+++..+.+.+.+.+.|++.++.++++
T Consensus 69 ~~tLFRgNSlaTK~m~~y~k~~G~~YL~~tL~pvI~~i~~~~~ 111 (313)
T cd05394 69 ANTIFRGNSLATRCLDEMMKIVGKHYLKVTLKPVLDEICDSPK 111 (313)
T ss_pred HhhHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345566654 46788888888766788899999999887654
No 290
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.12 E-value=2e+02 Score=26.11 Aligned_cols=103 Identities=11% Similarity=0.135 Sum_probs=66.7
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHH
Q 004614 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI 606 (742)
Q Consensus 527 ~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i 606 (742)
.+.+++|..-- -|.|++..-+. .-...+..|.++++.+...+-.-.|.-|-.++.+|+..++.+- -...+
T Consensus 12 ~l~~~dw~~~l----~icD~i~~~~~----~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev--~s~~f 81 (133)
T smart00288 12 SLLEEDWELIL----EICDLINSTPD----GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEV--ASKEF 81 (133)
T ss_pred CCCCcCHHHHH----HHHHHHhCCCc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH--HhHHH
Confidence 45567787544 34444443221 2345777888999888777777888888889999987654210 02334
Q ss_pred HHHHHHHHhhh-C-HHHHHHHHHHHHHHHHHcCCC
Q 004614 607 VDMVSSACRKK-I-KKYREAAFSCLEQVIKAFRDP 639 (742)
Q Consensus 607 v~~l~~~~~~~-~-~~~R~~a~~~Lg~l~~~~~~~ 639 (742)
++.+.+.++++ + +.+|..++..+......+.++
T Consensus 82 l~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~ 116 (133)
T smart00288 82 LNELVKLIKPKYPLPLVKKRILELIQEWADAFKND 116 (133)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 44444444443 2 339999999999999999653
No 291
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=44.94 E-value=1.7e+02 Score=26.61 Aligned_cols=75 Identities=11% Similarity=0.063 Sum_probs=57.4
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCCCC-hh-hHHHHHHHHHHHHhhcc
Q 004614 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPGRL-WE-GKDALLYAIGSISTSCH 592 (742)
Q Consensus 518 ~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~--~~~l~p~L~~~l~~r~-~~-~ke~vl~aL~~l~~~~~ 592 (742)
.+.+..+.+.+.+++..+...|...+..+++.+|..|... -..++..|.+.+..+. -+ +|+.++.-+......++
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 4566778888899999999999999999999999877543 3457777777776654 23 78888877777776654
No 292
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=44.42 E-value=1.5e+02 Score=26.07 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHH--HHHHHH----Hc--cCCcHHHHHHHHHHHHH
Q 004614 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRI--WTAAFR----AM--DDIKETVRTAGDKLCRS 225 (742)
Q Consensus 154 ~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i--~~~l~~----~l--~D~~~~VR~aA~~~~~~ 225 (742)
....++..|...+.+++|++.--|...+-.++..++ +.+..++..- +..+++ -. .|....||+.+..+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g-~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG-ERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 456778888888889999999999999988888777 3333322111 111111 01 24577888887655543
No 293
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=44.21 E-value=1.8e+02 Score=25.55 Aligned_cols=71 Identities=13% Similarity=0.005 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHH--HHHHHHHH----hcCCC--ChhhHHHHHHHHHH
Q 004614 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHH--VLLESIMK----EVPGR--LWEGKDALLYAIGS 586 (742)
Q Consensus 516 yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~--~l~p~L~~----~l~~r--~~~~ke~vl~aL~~ 586 (742)
...+++..+.+.|.+.+|.+.-.|...|..+++.+|..|...+. .++..+++ ...++ ...+|+.++.-+..
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999987755322 22222322 12222 34567777655543
No 294
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=43.74 E-value=1.1e+02 Score=28.89 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=54.5
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc-CCC--ChhhHHHHHHHHHHHHh
Q 004614 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV-PGR--LWEGKDALLYAIGSIST 589 (742)
Q Consensus 518 ~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l-~~r--~~~~ke~vl~aL~~l~~ 589 (742)
+.+++.+++.+.+.+..+=..+...+..+....+..++..++.+++.+...+ ... +...|+.+++.+..+++
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 3455556666666667777888899999999988888877888888887744 332 34589999999999986
No 295
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=43.53 E-value=1.2e+02 Score=27.09 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhh---CCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHH-----HccC----CcHHHHHHHH
Q 004614 153 EHLDLIFDDLLIQS---GSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFR-----AMDD----IKETVRTAGD 220 (742)
Q Consensus 153 ~~~~~il~~Ll~~l---~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~-----~l~D----~~~~VR~aA~ 220 (742)
..+..|+..|...+ ..++||+..-|+..|--|+...+ +.+...+..-...+.. ..++ .-..||+.|.
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~-~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~ 113 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGS-ERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAK 113 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS--HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHH
Confidence 35666777777777 77889999999998888887665 4444444333333322 2221 2234888876
Q ss_pred HHHHH
Q 004614 221 KLCRS 225 (742)
Q Consensus 221 ~~~~~ 225 (742)
..+.-
T Consensus 114 ~i~~l 118 (125)
T PF01417_consen 114 EILEL 118 (125)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 296
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=43.34 E-value=8.6e+02 Score=31.54 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccc---ccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHc
Q 004614 560 VLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK---DISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (742)
Q Consensus 560 ~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~---~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~ 636 (742)
..+..|++-|+..+..+-...+.+|-.|+..+.+ .+|.+ --+..+...+..++...-+.+..+|-.++...
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~------gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDD------GAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhc------ccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 4566777777776666556667777776665542 22211 11223333444456667777777777777665
No 297
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=43.24 E-value=5.9e+02 Score=29.59 Aligned_cols=140 Identities=13% Similarity=0.167 Sum_probs=78.4
Q ss_pred HHHHhhCCCCh--hHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHc-----cCCcHHHHHHHHHHHHHHHHHHHhh
Q 004614 161 DLLIQSGSRLW--RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM-----DDIKETVRTAGDKLCRSVTSLTIRL 233 (742)
Q Consensus 161 ~Ll~~l~~~~w--rvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l-----~D~~~~VR~aA~~~~~~l~~~~~r~ 233 (742)
.+-..+.+++| ..-..-|||+|.+-...+.+.=..++..++..++.+. .|.|..|..-. .-.+++. .|.
T Consensus 485 Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnI---MyvvGQY-pRF 560 (1053)
T COG5101 485 KLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNI---MYVVGQY-PRF 560 (1053)
T ss_pred HHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecce---eeeeccc-hHH
Confidence 34445666665 5567789999998665552222345555555555443 24444332211 0001110 111
Q ss_pred hccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcc--------cccchhhHHHHHHHhccccc
Q 004614 234 CDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA--------IRPHLSDLVSCMLESLSSLE 305 (742)
Q Consensus 234 ~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~--------l~p~lp~Lv~~Ll~~ls~~e 305 (742)
+.. .-..+..++--|++- +-.+.+.|+..||++..+|+++|.-. -.||+..|+-.+-..-.+.+
T Consensus 561 Lka-------hw~FLkTVv~KLFEF-MhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~ 632 (1053)
T COG5101 561 LKA-------HWSFLKTVVKKLFEF-MHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLE 632 (1053)
T ss_pred HHH-------HHHHHHHHHHHHHHH-HhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCC
Confidence 110 112344444444431 12357889999999999999987522 35787777777777777788
Q ss_pred hHHHHHH
Q 004614 306 DQGLNYI 312 (742)
Q Consensus 306 ~~~~~~~ 312 (742)
|+.++..
T Consensus 633 pqQ~htf 639 (1053)
T COG5101 633 PQQKHTF 639 (1053)
T ss_pred hHHHhHH
Confidence 8766543
No 298
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=43.23 E-value=1.7e+02 Score=26.53 Aligned_cols=115 Identities=13% Similarity=0.186 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHh-CcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCc------------CCC
Q 004614 534 SSKRKSAKAICKLGEIL-GESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISA------------EDP 600 (742)
Q Consensus 534 ~vR~~Aa~~lg~La~~~-g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~------------~~~ 600 (742)
-+|...+.++..++..- +..... +++.+.+.++. .....+.++.-|..+.+-..+.... .-.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~----~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPD----FLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTT----HHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCch----HHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 47888888999998764 344433 44444444433 2445666676776666655431100 001
Q ss_pred CchHHHHHHHHHHHhhhC----HHHHHHHHHHHHHHHHHcCCCchHH-hHHHHHHhhh
Q 004614 601 TTPFAIVDMVSSACRKKI----KKYREAAFSCLEQVIKAFRDPKFFN-IIFPLLFEMC 653 (742)
Q Consensus 601 ~~~~~iv~~l~~~~~~~~----~~~R~~a~~~Lg~l~~~~~~~~~~~-~v~~il~~~~ 653 (742)
...+.++..+.+-+.... ......++.+++.++.+.+-..+.+ -+.+.+-.+.
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l 135 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc
Confidence 125677777777665544 7889999999999999876433333 2444444444
No 299
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=43.14 E-value=2e+02 Score=29.47 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=67.8
Q ss_pred HhhHHHHHHHhh----hhhchhhhhhhHHHhhhcCCC-C---HHHHHHH---HHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 004614 96 AFGFSKIAKQAG----DALKPHLRLLIPKLVRFQYDP-D---KNVQDAM---AHIWKSLVADPKRTIDEHLDLIFDDLLI 164 (742)
Q Consensus 96 ~~~l~~i~~~~~----~~l~~~l~~lip~L~~~~~Dp-~---~~VR~a~---~~iw~~lv~d~~~~i~~~~~~il~~Ll~ 164 (742)
.-||..+++.+- ..+.....+.+-.++.....+ . ...||++ .-|-..|..+++. .+.-++..|+.|++
T Consensus 118 ~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~-~~~ll~~~~~~Ll~ 196 (255)
T PF10350_consen 118 YPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSN-SRPLLHRTMKSLLE 196 (255)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCc-chhHHHHHHHHHHH
Confidence 368888888774 223333334555555555555 2 2688886 2233334444432 12556667777776
Q ss_pred hhCCCCh--------hHHHHHHHHHHHHhccCC-chhhhhHHHHHHHHHHHHccC
Q 004614 165 QSGSRLW--------RSREASCLSLADIIQGRK-FDQVGKHLRRIWTAAFRAMDD 210 (742)
Q Consensus 165 ~l~~~~w--------rvR~aa~~Al~~L~~~~~-~~~l~~~L~~i~~~l~~~l~D 210 (742)
-...+.- .-|-+|..-|..|+.... .+...+|+.+.+...++.+.+
T Consensus 197 ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 197 IAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred HhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 6544322 357788888888776432 357788888888877776654
No 300
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=41.82 E-value=2.6e+02 Score=26.24 Aligned_cols=130 Identities=16% Similarity=0.079 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhchhhhhhhh--hhhhhHhhHhhc-
Q 004614 413 SAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH--AVIVPVIFISRF- 488 (742)
Q Consensus 413 ~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~-~d~~~r~~a~~~l~~i~~~~~~~~~~~~--~~vlP~l~~~~~- 488 (742)
.+++|..+..++..+.+..+++.-..+-+++..+.. .+.+....+..++.++....++.-...+ +.+++.+.....
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 456888888888877655444443444444444442 1233444455666666555555432211 334444333222
Q ss_pred -CCchHHHHHHHHHHHHhcCCChhhHHhh-HHHHHHHHHhhcc-CCCHH-HHHHHHHHHH
Q 004614 489 -EDDKYVSDLFEELWEENTSGDRVTLQLY-LGEIVSLICEGIA-SSSWS-SKRKSAKAIC 544 (742)
Q Consensus 489 -d~~~~v~~~~~~~~~~~~~~~~~~i~~y-l~~il~~l~~~L~-~~sw~-vR~~Aa~~lg 544 (742)
..++.+.....++...-+.. ...+.+ .+.-++.+.+... +.+-. +|--|+-+|.
T Consensus 98 ~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 34555555555665443222 233333 3445556666664 44444 6666666554
No 301
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=41.31 E-value=9.5e+02 Score=31.43 Aligned_cols=165 Identities=13% Similarity=0.110 Sum_probs=88.6
Q ss_pred HHhhchhhhhhhhhhhhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHH
Q 004614 464 YSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAI 543 (742)
Q Consensus 464 i~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~l 543 (742)
..+.....++.|.+.++-+.-..+...++.+++.-...|..+-.... + -+-.+++..++..+.+.+..--.+|...|
T Consensus 421 ~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s--~~qqeVv~~Lvthi~sg~~~ev~~aL~vL 497 (1426)
T PF14631_consen 421 TFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-S--YCQQEVVGALVTHIGSGNSQEVDAALDVL 497 (1426)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--H--HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-c--hhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33334556677777777665555666777787765566555333321 1 13467887777776555544445788889
Q ss_pred HHHHHHhCcchhhhHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHH
Q 004614 544 CKLGEILGESLSNYHHVLLESIMKEVPGRL-WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYR 622 (742)
Q Consensus 544 g~La~~~g~~~~~~~~~l~p~L~~~l~~r~-~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R 622 (742)
..|+..-+..+.+|-..+.++| ..+..=+ ...| .++.-|..++-.-. .........+--.+.+.+...+..|+
T Consensus 498 ~~L~~~~~~~l~~fa~~l~giL-D~l~~Ls~~qiR-~lf~il~~La~~~~----~~~s~i~del~ivIRKQLss~~~~~K 571 (1426)
T PF14631_consen 498 CELAEKNPSELQPFATFLKGIL-DYLDNLSLQQIR-KLFDILCTLAFSDS----SSSSSIQDELHIVIRKQLSSSNPKYK 571 (1426)
T ss_dssp HHHHHH-HHHHHHTHHHHHGGG-GGGGG--HHHHH-HHHHHHHHHHHHHS----S---HHHHHHHHHHHHHHT-SSHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHH-HHHhcCCHHHHH-HHHHHHHHHhcCCc----ccchhhHHHHHHHHHHhhcCCcHHHH
Confidence 9999877777766644444433 4443212 2233 23444444332111 11122345555566677877888888
Q ss_pred HHHHHHHHHHHHHcC
Q 004614 623 EAAFSCLEQVIKAFR 637 (742)
Q Consensus 623 ~~a~~~Lg~l~~~~~ 637 (742)
+..+-..-.++..+.
T Consensus 572 ~~GIIGav~~i~~la 586 (1426)
T PF14631_consen 572 RIGIIGAVMMIKHLA 586 (1426)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHH
Confidence 776655555555543
No 302
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=41.20 E-value=37 Score=23.08 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=21.9
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 004614 520 IVSLICEGIASSSWSSKRKSAKAICKLG 547 (742)
Q Consensus 520 il~~l~~~L~~~sw~vR~~Aa~~lg~La 547 (742)
.++.+.+.+.+.++++++.++.+|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3455556666889999999999998875
No 303
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=41.07 E-value=78 Score=33.52 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcc---hhhhH----HHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 004614 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES---LSNYH----HVLLESIMKEVPGRLWEGKDALLYAIGSI 587 (742)
Q Consensus 515 ~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~---~~~~~----~~l~p~L~~~l~~r~~~~ke~vl~aL~~l 587 (742)
.|..-++.++... +...++.+.....++++...-+.. |..+- +..+..+.+.+....+..++..+..|+.+
T Consensus 55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444455544444 556678888888888888765432 11111 12455666666666788899999999998
Q ss_pred HhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH
Q 004614 588 STSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (742)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~ 635 (742)
+...+...........+.+++.+...++.++..++..|+.+|+.++..
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 875543211000022344455555545456678889999999998753
No 304
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.57 E-value=9.3e+02 Score=30.55 Aligned_cols=133 Identities=15% Similarity=0.190 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-hCc-----------chh-----hhHH
Q 004614 497 LFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEI-LGE-----------SLS-----NYHH 559 (742)
Q Consensus 497 ~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~-~g~-----------~~~-----~~~~ 559 (742)
....+|.+..- ......|..+-+.+.++.+...-|..|.+|.....+|... .|. .++ ..||
T Consensus 809 vmkaIf~~~~L--S~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaALi~RvfGv~~s~~~~~~r~~~S~~~FFtkyp 886 (1417)
T KOG1810|consen 809 VMKAIFTSSIL--SNERSEFQSRALRLAIEGFSHDMWAERNSATLLFAALINRVFGVIRSRLCLDHRNRLSGLEFFTKYP 886 (1417)
T ss_pred HHHHHHccchh--hHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHHHHHHHHHhhhHHhhcccccccchhhhhhcCc
Confidence 34456654222 2344578888899999999888899999999999999865 341 111 1378
Q ss_pred HHHHHHHHhcC-------CCC-hh-hHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 004614 560 VLLESIMKEVP-------GRL-WE-GKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (742)
Q Consensus 560 ~l~p~L~~~l~-------~r~-~~-~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg 630 (742)
++.|.+...|. +.+ .+ .=+.++-.|.-+-..-..+-+.. ...+++.+.+....++-.+|..|...+-
T Consensus 887 ~L~~~ll~~Less~a~~sgs~q~s~aL~piLl~LSrL~~~~~~~~~~~----ls~F~p~l~ect~q~~~~vRemAs~vl~ 962 (1417)
T KOG1810|consen 887 TLHPLLLTELESSDAQLSGSEQSSLALWPILLMLSRLYPSAPRSATLG----LSVFVPFLQECTCQSNLKVREMASLVLL 962 (1417)
T ss_pred cHHHHHHHHhhhhccCCCcccCccccHHHHHHHHHhhcccCCccccCC----chhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88888886653 111 11 22334433333322221111111 2345555555555557899999999888
Q ss_pred HHHHH
Q 004614 631 QVIKA 635 (742)
Q Consensus 631 ~l~~~ 635 (742)
.++..
T Consensus 963 ~L~~~ 967 (1417)
T KOG1810|consen 963 ALVDA 967 (1417)
T ss_pred HHHHH
Confidence 87776
No 305
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=36.76 E-value=1.1e+02 Score=25.55 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=48.4
Q ss_pred hhhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHH
Q 004614 479 IVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAIC 544 (742)
Q Consensus 479 vlP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg 544 (742)
+-|+.....+..+.++|+...+....++.+.+..++..-+.++.++.....+.+-.+-+.|..++.
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 346655555667888998877777777776666778788888888888888777777777766653
No 306
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=36.14 E-value=1.4e+02 Score=24.97 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=42.2
Q ss_pred hhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 004614 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRS 173 (742)
Q Consensus 117 lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrv 173 (742)
+-|..+.+...++..||+-..+|...++......+..-++.++.-+-....+.+-.+
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~l 75 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESL 75 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccH
Confidence 456666667889999999999999999976555666667788877766666554333
No 307
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=34.63 E-value=3e+02 Score=25.42 Aligned_cols=76 Identities=7% Similarity=-0.006 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHhhcc
Q 004614 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPG-RLWEGKDALLYAIGSISTSCH 592 (742)
Q Consensus 517 l~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~--~~~l~p~L~~~l~~-r~~~~ke~vl~aL~~l~~~~~ 592 (742)
-.+.+..+.+.|.+.+..+.-.|...+..+++.+|..|... -..++..|.+-+.. ....+|+.++.-+-.....++
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 34567777888888999999999999999999999866442 24566666666643 346789999988877776654
No 308
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=34.62 E-value=2.2e+02 Score=27.62 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhc-cC-CchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 004614 150 TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ-GR-KFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (742)
Q Consensus 150 ~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~-~~-~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~ 227 (742)
.+..|++.|++ ...+++..+|..|..-+.-+++ |- .|. +-+|.+..+..|+.+.+|..|....+.+.
T Consensus 5 l~Qryl~~Il~----~~~~~~~~vr~~Al~~l~~il~qGLvnP~-------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 5 LVQRYLKNILE----LCLSSDDSVRLAALQVLELILRQGLVNPK-------QCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHH----HHhCCCHHHHHHHHHHHHHHHhcCCCChH-------HHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 44556666555 4456678999999988887775 32 222 44555566688999999999987777663
No 309
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=34.60 E-value=3.2e+02 Score=25.18 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=54.3
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcC----C--CChhhHHHHHHHHHHHHhh
Q 004614 519 EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVP----G--RLWEGKDALLYAIGSISTS 590 (742)
Q Consensus 519 ~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~--~~~l~p~L~~~l~----~--r~~~~ke~vl~aL~~l~~~ 590 (742)
+.+..+.+.+.+++..+--.|...|..+++.+|..|... -..++.-|++.+. + ....+|+.++.-+-.....
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456677788889998888889999999999999877442 2345555666553 2 2367999999887777765
Q ss_pred cc
Q 004614 591 CH 592 (742)
Q Consensus 591 ~~ 592 (742)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 54
No 310
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.52 E-value=1.1e+03 Score=29.49 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=76.6
Q ss_pred hHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcC-CCCHHHHHHH---HHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCC
Q 004614 94 GAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQY-DPDKNVQDAM---AHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR 169 (742)
Q Consensus 94 ~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~-Dp~~~VR~a~---~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~ 169 (742)
.......+...+-.+.++.++..++-.+|-.|| |-.|.+|-.. ..||-...++ -.++ +..|+.+==.|.|+
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~--~Fl~---dsYLKYiGWtLsDk 338 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPE--IFLS---DSYLKYIGWTLSDK 338 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccH--HHhc---chHHHHhcceeecC
Confidence 334444454455556777788888888887666 8899999775 5577665532 1111 12333344457899
Q ss_pred ChhHHHHHHHHHHHHhccCC-chhhhhHH----HHHHHHHHHHccCCcHHHHHHHHHHHH
Q 004614 170 LWRSREASCLSLADIIQGRK-FDQVGKHL----RRIWTAAFRAMDDIKETVRTAGDKLCR 224 (742)
Q Consensus 170 ~wrvR~aa~~Al~~L~~~~~-~~~l~~~L----~~i~~~l~~~l~D~~~~VR~aA~~~~~ 224 (742)
+-.||..+..||--|.+... .+.++-+. ..|+.++ ..|-...||..+...|-
T Consensus 339 ~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa---drd~~~~Vrav~L~~~~ 395 (1048)
T KOG2011|consen 339 NGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA---DRDRNVSVRAVGLVLCL 395 (1048)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH---hhhcchhHHHHHHHHHH
Confidence 99999999999999998632 12222222 2333333 35777889988755443
No 311
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=32.10 E-value=1.9e+02 Score=34.22 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=67.8
Q ss_pred chhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHH-HHHHHHHHhh-CCCChhHHHHHHHHHHHHhccC
Q 004614 111 KPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQS-GSRLWRSREASCLSLADIIQGR 188 (742)
Q Consensus 111 ~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~-~il~~Ll~~l-~~~~wrvR~aa~~Al~~L~~~~ 188 (742)
+|+-..++.+|-.|+.+|.- |-.+......++..-+.-+-.... ++++.|++++ .|.+.-+=..|+.+|..|+-..
T Consensus 65 ~P~~K~~~~~l~~~~~~~~~--Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 65 EPHDKHLFDKLNDYFVKPSY--RLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred CccHHHHHHHHHHHHcCchh--HHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 46666788888888887754 445666666766532233333333 6777777775 4667778889999999999877
Q ss_pred CchhhhhHHHHHHHHHHHHc
Q 004614 189 KFDQVGKHLRRIWTAAFRAM 208 (742)
Q Consensus 189 ~~~~l~~~L~~i~~~l~~~l 208 (742)
+ ..+.+||++||....|.+
T Consensus 143 p-~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 P-SSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred c-chhhHHHHHHHHHHHHHH
Confidence 6 678999999999988876
No 312
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=31.82 E-value=7.1e+02 Score=27.15 Aligned_cols=348 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCccchhHhHHHHHhHHHhh
Q 004614 178 CLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA 257 (742)
Q Consensus 178 ~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~ 257 (742)
...+.++++..+.-...-.+....+.+...+-+....||.+|.+.++.+..-. .....+.+.=+++++-
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-----------~~l~~~~~l~id~~ii 72 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-----------ESLQILLKLHIDIFII 72 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-----------HHHHHHHHcCCchhhH
Q ss_pred cCCCC--ChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcCcchhhhhHHhhhhcc
Q 004614 258 EGILS--KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAK 335 (742)
Q Consensus 258 ~gl~~--~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~~d~~r~~~~~ 335 (742)
+.+.. ++..-|..|+..+-.+.+..+ .....-..++..++....+.++...+.
T Consensus 73 ~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~------------------------ 127 (371)
T PF14664_consen 73 RSLDRDNKNDVEREQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRI------------------------ 127 (371)
T ss_pred hhhcccCCChHHHHHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHH------------------------
Q ss_pred CCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhccccHH
Q 004614 336 GSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAA 415 (742)
Q Consensus 336 ~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~ 415 (742)
+++.+++.. +..|..+..++-+..|.......-....+.++..++..+ .++.
T Consensus 128 ------cletL~El~-------------------l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL---d~p~ 179 (371)
T PF14664_consen 128 ------CLETLCELA-------------------LLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL---DSPR 179 (371)
T ss_pred ------HHHHHHHHH-------------------hhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh---CCcc
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh----hcCCc--hhHHHHHHHHHHHHhhchhhhhhhhhh--hhhHhhHhh
Q 004614 416 AKRAFASACASVLKYATPSQAQKLIEETAAL----HIDDK--NSQISCAILLKSYSSVASDVLSGYHAV--IVPVIFISR 487 (742)
Q Consensus 416 Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~----~~~d~--~~r~~a~~~l~~i~~~~~~~~~~~~~~--vlP~l~~~~ 487 (742)
.|+..-.... +..++....+. ..++. +.-..+..++..+-|.-+..+-=..+. -+.-+....
T Consensus 180 tR~yl~~~~d----------L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L 249 (371)
T PF14664_consen 180 TRKYLRPGFD----------LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSL 249 (371)
T ss_pred hhhhhcCCcc----------HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHH
Q ss_pred cCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHH---HHHHHHHHHHHHHhCcchhhhHHHHHHH
Q 004614 488 FEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSK---RKSAKAICKLGEILGESLSNYHHVLLES 564 (742)
Q Consensus 488 ~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR---~~Aa~~lg~La~~~g~~~~~~~~~l~p~ 564 (742)
+-+..++|....++.-++..-.+..-..-...-.......--...|+.+ ......+..-......-+..|+.-++-.
T Consensus 250 ~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~i 329 (371)
T PF14664_consen 250 RLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAI 329 (371)
T ss_pred cCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHH
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH
Q 004614 565 IMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIK 634 (742)
Q Consensus 565 L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~ 634 (742)
+ .+.+++++|..++.... +...+..|...||++..
T Consensus 330 l----------i~~gL~~~L~~li~~~~-------------------------d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 330 L----------IEAGLLEALVELIESSE-------------------------DSSLSRKATLLLGELLH 364 (371)
T ss_pred H----------HHcChHHHHHHHHhcCC-------------------------CchHHHHHHHHHHHHHH
No 313
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=31.27 E-value=1e+03 Score=28.89 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=48.0
Q ss_pred hhhhhHHHhhhcCCCC----HHHHHHHHHHHHHhccCCHH-H----------------HHHHHHHHHHHHHHhhCCCChh
Q 004614 114 LRLLIPKLVRFQYDPD----KNVQDAMAHIWKSLVADPKR-T----------------IDEHLDLIFDDLLIQSGSRLWR 172 (742)
Q Consensus 114 l~~lip~L~~~~~Dp~----~~VR~a~~~iw~~lv~d~~~-~----------------i~~~~~~il~~Ll~~l~~~~wr 172 (742)
++.++..|-+++.+++ +.+-+.+..|...++.+... . -.+++.-+++.+-......+.+
T Consensus 165 l~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~ 244 (802)
T PF13764_consen 165 LNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQ 244 (802)
T ss_pred HHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHH
Confidence 4566667767778877 77777778888887754211 0 2233444444444333344678
Q ss_pred HHHHHHHHHHHHhccCC
Q 004614 173 SREASCLSLADIIQGRK 189 (742)
Q Consensus 173 vR~aa~~Al~~L~~~~~ 189 (742)
++++.+..|..|.-|..
T Consensus 245 i~~~l~RiLP~Lt~G~~ 261 (802)
T PF13764_consen 245 ILQALARILPFLTYGNE 261 (802)
T ss_pred HHHHHHHHhhHHhcCCH
Confidence 88888888888877653
No 314
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=30.78 E-value=3.1e+02 Score=25.26 Aligned_cols=103 Identities=12% Similarity=0.151 Sum_probs=62.2
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHhhcccccCcC--CCCc
Q 004614 526 EGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAE--DPTT 602 (742)
Q Consensus 526 ~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~-~r~~~~ke~vl~aL~~l~~~~~~~~~~~--~~~~ 602 (742)
..+..++|..-- -|.|++.. +.. .-...+-.|.+++. ++...+-.-.|.-|-.++++||..++.+ ...|
T Consensus 12 e~l~~~dw~~il----eicD~In~-~~~---~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~F 83 (141)
T cd03565 12 GSLQSEDWGLNM----EICDIINE-TED---GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDF 83 (141)
T ss_pred cCCCCcCHHHHH----HHHHHHhC-CCC---cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 345567887654 33344432 111 23567778888886 4555555556777777899998665421 1123
Q ss_pred hHHHHHHHHHHHhh---hCHHHHHHHHHHHHHHHHHcCCC
Q 004614 603 PFAIVDMVSSACRK---KIKKYREAAFSCLEQVIKAFRDP 639 (742)
Q Consensus 603 ~~~iv~~l~~~~~~---~~~~~R~~a~~~Lg~l~~~~~~~ 639 (742)
+.. .+.+-+.. ....||...+..+......++++
T Consensus 84 l~e---~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 84 IKD---VLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred hhH---HHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 343 13333332 24589999999999999999764
No 315
>COG5543 Uncharacterized conserved protein [Function unknown]
Probab=30.78 E-value=1.1e+03 Score=28.92 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-hCc----ch-----------------
Q 004614 497 LFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEI-LGE----SL----------------- 554 (742)
Q Consensus 497 ~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~-~g~----~~----------------- 554 (742)
....+.++..-+ .....|+++.+.+...+..+.-|.+|.|+.-....|+.+ +|. .+
T Consensus 795 ~l~~If~e~~Ls--s~~~~~ieea~~La~~~f~~~lWaiRNcsImLFT~LvnRaFg~~~~~~vg~~~~~s~klff~k~s~ 872 (1400)
T COG5543 795 ILSRIFEEGCLS--SKLPLQIEEAFGLAFKCFRSNLWAIRNCSIMLFTNLVNRAFGRGPEGIVGMAHAGSRKLFFKKLSL 872 (1400)
T ss_pred HHHHHHhccccc--cccHHHHHHHHHHHHhccccceeeecccchHHHHHHHHHHhCCCCCcccccchhhHHHHHHHhhhH
Confidence 344556553322 345789999999999999999999999999999999965 441 11
Q ss_pred -hhhHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHhh
Q 004614 555 -SNYHHVLLESIMKEVPG--RLWEGKDALLYAIGSISTS 590 (742)
Q Consensus 555 -~~~~~~l~p~L~~~l~~--r~~~~ke~vl~aL~~l~~~ 590 (742)
.+++-.++...+..+.| |...|-+.|+.-+..+-.-
T Consensus 873 lrd~ll~~L~~sIa~lsg~~r~s~g~e~I~~v~~~l~rl 911 (1400)
T COG5543 873 LRDKLLDVLALSIAHLSGRMRESNGEESIFLVTEALWRL 911 (1400)
T ss_pred HHHHHHHHHHHHHHHHhcCcCcccccchHHHHHHHHHHh
Confidence 11233455555666655 4456778777777666543
No 316
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=29.74 E-value=1.2e+02 Score=32.11 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=30.7
Q ss_pred hhCHHHHHHH--HHHHHHHHHHcCCCchHHhHHHHHHhhhcCcc
Q 004614 616 KKIKKYREAA--FSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTA 657 (742)
Q Consensus 616 ~~~~~~R~~a--~~~Lg~l~~~~~~~~~~~~v~~il~~~~~~~~ 657 (742)
+.+.-.|.++ -+++..+++..+.+.+.+.+.|+++++.++++
T Consensus 68 ~~~tLFRgNSlaTK~m~~y~k~~G~~YL~~tL~pvI~~i~~~~~ 111 (310)
T cd05134 68 DPNTIFRGNSLTSKCIDETMKLAGMHYLQVTLKPIIDEICQEHK 111 (310)
T ss_pred CcchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455566654 36688888888767788899999999887654
No 317
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.61 E-value=5.2e+02 Score=29.13 Aligned_cols=104 Identities=14% Similarity=0.188 Sum_probs=66.2
Q ss_pred HhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchH
Q 004614 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPF 604 (742)
Q Consensus 525 ~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~ 604 (742)
...+..++|.+-- -|+|++...... -+...-.|.++++.+...+.--.|.-|-.++++|++.++.+- --.
T Consensus 11 ~~~l~~pDWa~Nl----eIcD~IN~~~~~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~V--a~k 80 (470)
T KOG1087|consen 11 SESLAEPDWALNL----EICDLINSTEGG----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQV--ASK 80 (470)
T ss_pred cccccCccHHHHH----HHHHHHhcCccC----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHH--HHH
Confidence 3556788897655 355555443322 235777788888887764445555556667889997764210 012
Q ss_pred HHHHHHHHHHhhh--CHHHHHHHHHHHHHHHHHcCC
Q 004614 605 AIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 605 ~iv~~l~~~~~~~--~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
.+++-.++..+++ ...+|..++..+.....++++
T Consensus 81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 81 EFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 2333344443333 678999999999999999987
No 318
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=28.83 E-value=56 Score=20.53 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHh
Q 004614 173 SREASCLSLADII 185 (742)
Q Consensus 173 vR~aa~~Al~~L~ 185 (742)
||.++..+|+.+-
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 6889999998873
No 319
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=28.09 E-value=2.1e+02 Score=26.97 Aligned_cols=81 Identities=11% Similarity=-0.025 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCH
Q 004614 540 AKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIK 619 (742)
Q Consensus 540 a~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~ 619 (742)
..+|+.++.+....+..+...+-.. .+.+.--..+.-..++.|+--+++... .+.+.++-.+.|.+-+++.
T Consensus 76 idlL~~lv~~~p~~vle~~~~l~~~-ld~l~~lp~~~a~~ll~Al~PLi~~s~--------~lrd~lilvLRKamf~r~~ 146 (158)
T PF14676_consen 76 IDLLSELVRKAPLTVLECSSKLKEL-LDYLSFLPGDVAIGLLRALLPLIKFSP--------SLRDSLILVLRKAMFSREL 146 (158)
T ss_dssp HHHHHHHHHH-HHHHS-S-HHHHGG-GGGTTTS-HHHHHHHHHHHHHHHTT-H--------HHHHHHHHHHHHHTT-SSH
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHccccH
Confidence 4688888887665554443333322 233333334556777888877776332 3467788888888888899
Q ss_pred HHHHHHHHHH
Q 004614 620 KYREAAFSCL 629 (742)
Q Consensus 620 ~~R~~a~~~L 629 (742)
..|+.|...+
T Consensus 147 ~~R~~Av~Gf 156 (158)
T PF14676_consen 147 DARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 320
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.91 E-value=7.8e+02 Score=26.40 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=89.5
Q ss_pred HHHHHHhhhcCChhHHHHHHHHhccccchhhhhhHHhhHHHHHHHh-hhhhchh------hhhhhHHHhhhcCCCCHHHH
Q 004614 61 KELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA-GDALKPH------LRLLIPKLVRFQYDPDKNVQ 133 (742)
Q Consensus 61 k~l~~lA~~~~~p~lv~~fm~l~~~~~~w~~r~~A~~~l~~i~~~~-~~~l~~~------l~~lip~L~~~~~Dp~~~VR 133 (742)
.|+|.---+.|.-+.+.+.|+-.+... -|..+=..++-+-.-+ .+..+.. +++|+..+.++ -.+|.|=
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~---~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h--~~~p~Vi 347 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQG---NRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH--SDDPLVI 347 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhh---HHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc--CCChHHH
Confidence 477777778888777777776543332 2323322332221111 1233322 44566666544 4455565
Q ss_pred HHHHHHHHHhccCCHHHHHHHHH-----HHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHc
Q 004614 134 DAMAHIWKSLVADPKRTIDEHLD-----LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM 208 (742)
Q Consensus 134 ~a~~~iw~~lv~d~~~~i~~~~~-----~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l 208 (742)
+.+..|...|.-..|+--...++ ..++.+-.. -...-|+..+|+++-+++.... +.-.+.|..=+..+.+.-
T Consensus 348 ~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah--P~~a~vQrnac~~IRNiv~rs~-~~~~~~l~~GiE~Li~~A 424 (461)
T KOG4199|consen 348 QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH--PVAAQVQRNACNMIRNIVVRSA-ENRTILLANGIEKLIRTA 424 (461)
T ss_pred HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHhhh-hccchHHhccHHHHHHHH
Confidence 66666665554322222222222 233322221 1224788999999999986432 455556666666677766
Q ss_pred cCCcHHHHHHHHHHHHHHHH
Q 004614 209 DDIKETVRTAGDKLCRSVTS 228 (742)
Q Consensus 209 ~D~~~~VR~aA~~~~~~l~~ 228 (742)
.-.++++|.+|.-+++.|+.
T Consensus 425 ~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 425 KANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HhcCccHHHHHHHHHHhcCc
Confidence 77888999998888887764
No 321
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=27.77 E-value=2.3e+02 Score=24.71 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHH-HHHHHHhcCCCChhhHHHHHHH
Q 004614 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVL-LESIMKEVPGRLWEGKDALLYA 583 (742)
Q Consensus 515 ~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~~~~~~~~~l-~p~L~~~l~~r~~~~ke~vl~a 583 (742)
.+.++|+..+.+.+.......|-.+.+.+.+++...+.....++... .+.+...+..-..+.|+.+..-
T Consensus 33 ~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl 102 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERL 102 (114)
T ss_pred HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 46677888888888777778888999999999998876544433333 5555555554445566555443
No 322
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=27.46 E-value=6.1e+02 Score=25.01 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=56.3
Q ss_pred hhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhh
Q 004614 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (742)
Q Consensus 116 ~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~ 195 (742)
...+.++....|+|.=+||++.-..-.... +..++.++.-+...++|+++=+|+|..++|-++.... ++.+.+
T Consensus 115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~------~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d-~~~V~~ 187 (208)
T cd07064 115 EFEPVMDEWSTDENFWLRRTAILHQLKYKE------KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTN-PDWVRD 187 (208)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHH------ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccC-HHHHHH
Confidence 446778888999999999998654322222 2235666666778889999999999999999987654 366666
Q ss_pred HHHHH
Q 004614 196 HLRRI 200 (742)
Q Consensus 196 ~L~~i 200 (742)
|+.+-
T Consensus 188 fl~~~ 192 (208)
T cd07064 188 FVAAH 192 (208)
T ss_pred HHHHh
Confidence 66543
No 323
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.26 E-value=1.1e+03 Score=27.86 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHHHHHHhhhhhcccc-HHHHHHHHHHHHHHHhhCCHH
Q 004614 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKS-AAAKRAFASACASVLKYATPS 434 (742)
Q Consensus 356 ~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~-~~Vr~~~~~al~~L~~~~~~~ 434 (742)
+.++..+.+.+...-....-.+|...+..|+.+++..+....+.+++.++..= +... +.-.+.-..|+..++-..++.
T Consensus 507 PaYV~Dl~emL~~~E~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhLq-n~f~~~~F~etq~~aiVa~~vT~p~p 585 (849)
T KOG4346|consen 507 PAYVADLFEMLLEKEKYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHLQ-NNFGTPKFKETQVDAIVAACVTQPPP 585 (849)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH-HhcCccchhhhhHHHHHHHHhcCCCc
Confidence 45777777777554334444577788888899999999999999999988653 2111 122233345555555555544
Q ss_pred HH
Q 004614 435 QA 436 (742)
Q Consensus 435 ~~ 436 (742)
..
T Consensus 586 ca 587 (849)
T KOG4346|consen 586 CA 587 (849)
T ss_pred ch
Confidence 33
No 324
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=27.18 E-value=9.2e+02 Score=27.03 Aligned_cols=173 Identities=13% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCCCchHhhHHHHHHHHHHHhccccccc-HHHHHHHHhhhhhccc----------cHHHHHHHHHHHHHH
Q 004614 359 VPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY-TSMLLRLLFPVVKEEK----------SAAAKRAFASACASV 427 (742)
Q Consensus 359 vp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~-~~~ll~~Ll~~l~~D~----------~~~Vr~~~~~al~~L 427 (742)
.|.|.+.++...+.|.-+.|++++..|.+.+-..+..+ -+.++..|+..+ =+| +.+||+.+...+-.+
T Consensus 217 l~~L~~lL~~~~~~pRv~~c~~~VP~LL~vyF~vvl~~ad~sLi~~L~pvl-leRs~~Lfp~~~y~~eV~rvlss~ll~l 295 (459)
T PF14764_consen 217 LPPLHQLLQPAAGCPRVVQCAEVVPVLLQVYFSVVLQDADGSLICQLLPVL-LERSDALFPIPQYQAEVRRVLSSQLLAL 295 (459)
T ss_pred hHHHHHHHHHhcCCchHHHHHhhhHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHhcCChhHHHHHHHHHHHHHHHH
Q ss_pred HhhCC---HHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHH------HhhchhhhhhhhhhhhhHhhHhhcCCchHHHH
Q 004614 428 LKYAT---PSQAQKLIEETAALHI--DDKNSQISCAILLKSY------SSVASDVLSGYHAVIVPVIFISRFEDDKYVSD 496 (742)
Q Consensus 428 ~~~~~---~~~~~~li~~l~~~~~--~d~~~r~~a~~~l~~i------~~~~~~~~~~~~~~vlP~l~~~~~d~~~~v~~ 496 (742)
++..| -+.-..+++.+-+... .-++.-...+.++|.. .+...+.+..|...+=-++|...+...
T Consensus 296 fk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~~~~~~----- 370 (459)
T PF14764_consen 296 FKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEVTQSRR----- 370 (459)
T ss_pred HHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHHhhccc-----
Q ss_pred HHHHHHHHhcCCChhhHHhhHHHHHHHHHhhc---cCCCHHHHHHHHHHHHHHHH
Q 004614 497 LFEELWEENTSGDRVTLQLYLGEIVSLICEGI---ASSSWSSKRKSAKAICKLGE 548 (742)
Q Consensus 497 ~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L---~~~sw~vR~~Aa~~lg~La~ 548 (742)
..+.....|-+.++-.++..+ .+.+.++..-+..+++.+..
T Consensus 371 -----------~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~pRv~l~LsK~~~ 414 (459)
T PF14764_consen 371 -----------DPSASRPSSQPRLMTVLMTALAKLASRSQDLIPRVSLCLSKMRT 414 (459)
T ss_pred -----------cccccCCCCchhHHHHHHHHHHHHHHhCHhhhHHHHHHHHHHHH
No 325
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=27.07 E-value=5.9e+02 Score=24.70 Aligned_cols=92 Identities=9% Similarity=0.095 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHH
Q 004614 533 WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR-----LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIV 607 (742)
Q Consensus 533 w~vR~~Aa~~lg~La~~~g~~~~~~~~~l~p~L~~~l~~r-----~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv 607 (742)
-++|..|..++..+.. .+..-.++++ =.+.|.+.+... .|..=...+..+..+.. .+.+...++
T Consensus 21 DrvR~~A~~~l~~ll~-~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~---------~~~y~~~ll 89 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLH-SQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD---------LPEYRYSLL 89 (193)
T ss_pred HHHHHHHHHHHHHHhc-CCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc---------cHHHHHHHH
Confidence 4699999999999983 3322111222 123333433221 26555556665555542 124566677
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHH
Q 004614 608 DMVSSACRKKIKKYREAAFSCLEQVIKA 635 (742)
Q Consensus 608 ~~l~~~~~~~~~~~R~~a~~~Lg~l~~~ 635 (742)
.-++......+..+.+.|..+|-.++..
T Consensus 90 ~Glv~S~G~~tesl~~~s~~AL~~~~~~ 117 (193)
T PF12612_consen 90 SGLVVSAGGLTESLVRASSAALLSYLRE 117 (193)
T ss_pred hHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 7766666666777788888888887764
No 326
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=26.74 E-value=7.8e+02 Score=26.04 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhc-cCCchhhhhHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHHHHHHH
Q 004614 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ-GRKFDQVGKHLRRIWTAAFRAMDDIK-ETVRTAGDKLCRSVTSLTI 231 (742)
Q Consensus 154 ~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~-~~~~~~l~~~L~~i~~~l~~~l~D~~-~~VR~aA~~~~~~l~~~~~ 231 (742)
|-..+-..|...=..++|----++..-+...++ ....-.+.|+=..+-..+-++|+-.= ..|-.-|.+....+-+..
T Consensus 8 y~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~i- 86 (307)
T PF04118_consen 8 YNAEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERI- 86 (307)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhc-
Confidence 333333333333335577666555555555556 33323445555555556666665332 346666655554442211
Q ss_pred hhhccccCccchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHH
Q 004614 232 RLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNY 311 (742)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~ 311 (742)
....- ..+..-....++|++-. .+-.||...++.+-+-.-..|+.++|.++.++..++-.+.+...+.
T Consensus 87 --g~~~L--~~dl~i~~~GLfpl~~~-----asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~--- 154 (307)
T PF04118_consen 87 --GPDGL--AQDLPIYSPGLFPLFSY-----ASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEF--- 154 (307)
T ss_pred --CHHHH--HhhcHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchH---
Confidence 00000 00111244556676532 2446777667776665556777888888888888877776433222
Q ss_pred HHHHhhhcCcchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcc
Q 004614 312 IELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGM 391 (742)
Q Consensus 312 ~~~~a~~~~~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~ 391 (742)
.+. +++.++.+...++.+ .|...+-..+.+ ....|.++..++. ++++.
T Consensus 155 --------------~~~----------~~~ll~~l~~~v~~~---~F~~~lwl~ii~--sp~~Rl~al~~l~---~~l~~ 202 (307)
T PF04118_consen 155 --------------FDR----------TLKLLDKLKEAVGDK---YFWQCLWLCIIT--SPSRRLGALNYLL---RRLPK 202 (307)
T ss_pred --------------HHH----------HHHHHHHHHHhcChh---HHHHHHHHHHhc--CcchhHHHHHHHH---HhCCc
Confidence 111 233455555555554 344444444432 1245667777663 33332
Q ss_pred c---------------ccccHHHHHHHHhhhhhccccHHHHHHHH
Q 004614 392 D---------------IKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (742)
Q Consensus 392 ~---------------l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~ 421 (742)
. +.|--+-+++++..++ +|.+.-|++.+-
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L-~D~~iLVqR~~L 246 (307)
T PF04118_consen 203 FQNDELSLSSEEQEYCLGPDPGLLVRALCACL-EDENILVQRGFL 246 (307)
T ss_pred ccccccccchHHHHHhcCCCccHHHHHHHHHh-CCchHHHHHHHH
Confidence 2 2344556788888888 677777766654
No 327
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=25.70 E-value=1.6e+03 Score=29.34 Aligned_cols=50 Identities=8% Similarity=0.055 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCC--chHH-hHHHHHHhhhc
Q 004614 605 AIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP--KFFN-IIFPLLFEMCG 654 (742)
Q Consensus 605 ~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~~--~~~~-~v~~il~~~~~ 654 (742)
..+..++..+|..+..+..++|.+|+.|..--+.+ .+.+ .-.+++..+..
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIh 582 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIH 582 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHh
Confidence 34567778888888889999999999988765542 1222 33455555433
No 328
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.47 E-value=5.2e+02 Score=23.23 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=42.5
Q ss_pred hHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHH---HHHHHhhhhh-------ccccHHHHHHHHH
Q 004614 353 ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSM---LLRLLFPVVK-------EEKSAAAKRAFAS 422 (742)
Q Consensus 353 ~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~---ll~~Ll~~l~-------~D~~~~Vr~~~~~ 422 (742)
..+.+++..|.+-+++. +..+|.=|..+|-.++.+-+..|...+.+ +++.+...-. ++.+..||..+-.
T Consensus 34 ~~~~ei~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 44566777777777653 45666778888887777766666544433 2222222111 1234556666666
Q ss_pred HHHHHH
Q 004614 423 ACASVL 428 (742)
Q Consensus 423 al~~L~ 428 (742)
++..++
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 555544
No 329
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=24.14 E-value=2e+02 Score=29.47 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHH
Q 004614 126 YDPDKNVQDAMAHIWKSLVA---DPKRTIDEHLDLIFDDLL 163 (742)
Q Consensus 126 ~Dp~~~VR~a~~~iw~~lv~---d~~~~i~~~~~~il~~Ll 163 (742)
.+-+..||.++..++..++. .+++.+-+||..++..-+
T Consensus 123 ~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l 163 (249)
T PF06685_consen 123 PDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFL 163 (249)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 34445566666665555543 223444555555554433
No 330
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.90 E-value=1.3e+03 Score=27.51 Aligned_cols=95 Identities=11% Similarity=0.100 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhchhhhhhhh-hhhhhHhhHh-hcCCchHHHHHHHHHHHHhcCCChhhHH
Q 004614 437 QKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYH-AVIVPVIFIS-RFEDDKYVSDLFEELWEENTSGDRVTLQ 514 (742)
Q Consensus 437 ~~li~~l~~~~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~-~~vlP~l~~~-~~d~~~~v~~~~~~~~~~~~~~~~~~i~ 514 (742)
..|+..+-+.+ .....|..+..+++.|.+.-|..+-... ..+++-++.+ ++|.+..+.....-++--+.+-.+..+.
T Consensus 69 K~~~~~l~~~~-~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 69 KHLFDKLNDYF-VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred HHHHHHHHHHH-cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhh
Confidence 34444444433 4567788888889998877665443322 2344555554 4566666555444555566677777889
Q ss_pred hhHHHHHHHHHhhccCCCHHH
Q 004614 515 LYLGEIVSLICEGIASSSWSS 535 (742)
Q Consensus 515 ~yl~~il~~l~~~L~~~sw~v 535 (742)
+|+++++.+..+.+ +|..
T Consensus 148 ~~L~~Lf~If~Rl~---~W~~ 165 (668)
T PF04388_consen 148 PHLPDLFNIFGRLL---SWER 165 (668)
T ss_pred HHHHHHHHHHHHHH---Hccc
Confidence 99999999988876 4554
No 331
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.46 E-value=4.8e+02 Score=24.07 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=39.9
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCch-hhhhHHHH
Q 004614 121 LVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD-QVGKHLRR 199 (742)
Q Consensus 121 L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~-~l~~~L~~ 199 (742)
+++...++++.||+.+.+|.-..- + ..+..|-+. |..-+.|+.+| + .+..+..+.+.+ .-..|-++
T Consensus 22 ~~~LL~~~d~~vQklAL~cll~~k-~--~~l~pY~d~----L~~Lldd~~fr--d----eL~~f~~~~~~~~I~~ehR~~ 88 (141)
T PF07539_consen 22 LLRLLSSRDPEVQKLALDCLLTWK-D--PYLTPYKDN----LENLLDDKTFR--D----ELTTFNLSDESSVIEEEHRPE 88 (141)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhC-c--HHHHhHHHH----HHHHcCcchHH--H----HHHhhcccCCcCCCCHHHHhH
Confidence 344579999999999988765532 2 234444333 44445555444 3 222333222211 12345666
Q ss_pred HHHHHHHHc
Q 004614 200 IWTAAFRAM 208 (742)
Q Consensus 200 i~~~l~~~l 208 (742)
++|.++|.+
T Consensus 89 l~pvvlRIL 97 (141)
T PF07539_consen 89 LMPVVLRIL 97 (141)
T ss_pred HHHHHHHHH
Confidence 666666654
No 332
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.30 E-value=5.1e+02 Score=23.85 Aligned_cols=62 Identities=6% Similarity=-0.086 Sum_probs=37.6
Q ss_pred cCCCCHHHHHHHHHHHHHhccCCHHHH-HHHH-HHHHHH-HHHhhCC---CChhHHHHHHHHHHHHhc
Q 004614 125 QYDPDKNVQDAMAHIWKSLVADPKRTI-DEHL-DLIFDD-LLIQSGS---RLWRSREASCLSLADIIQ 186 (742)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~lv~d~~~~i-~~~~-~~il~~-Ll~~l~~---~~wrvR~aa~~Al~~L~~ 186 (742)
.+.+|++|+.-+..+..++++|....+ .+.- ..++++ |...+.+ ....|++-....+.....
T Consensus 48 ~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 48 NGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 357899999888999999999875433 2221 245555 4444432 234677766655544443
No 333
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=22.49 E-value=52 Score=24.66 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=26.8
Q ss_pred HHHHHhcccccccHHHHHHHHhhhhhccccHHHHHHHHHHHHHH
Q 004614 384 LLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASV 427 (742)
Q Consensus 384 ~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~al~~L 427 (742)
..+.+++.+.+.|-+.+.+.|...- ..=+++.|+.++.|+-.|
T Consensus 4 ~va~cYp~~~~~Fp~~L~~lL~~~~-~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 4 HVAHCYPKETKDFPQELIDLLRNHH-TVLDPDLRMKLVKALILL 46 (52)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHH
Confidence 3455666666666666666665543 234578888888877544
No 334
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=21.51 E-value=6.7e+02 Score=31.10 Aligned_cols=137 Identities=12% Similarity=0.042 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHhcC
Q 004614 492 KYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKEVP 570 (742)
Q Consensus 492 ~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~~sw~vR~~Aa~~lg~La~~~g~-~~~~~~~~l~p~L~~~l~ 570 (742)
-.|+..+.++.+...-..+.++++|...++--++.++++.+-+--+--+..|.++.+.+.+ .+ +...+|..+...=+
T Consensus 119 i~v~s~~i~li~~yiv~Lg~~vr~~~~~i~isLLpg~e~es~e~~~l~~hLi~tl~k~L~d~~~--fw~~~w~ill~~~~ 196 (1618)
T COG5221 119 ILVVSSFIDLIERYIVPLGKDVRSYCTSILISLLPGMEFESGEYYSLRAHLIITLFKSLIDPDV--FWSSMWGILLNDER 196 (1618)
T ss_pred hHhHHHHHHHHHhheeecCccHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHhcCChhH--HHHHHHHHHhcCcc
Confidence 3466777777777555555788999998888888888877766666677888888888754 33 57777777754322
Q ss_pred CCChhhHHHHHHHHHHHHhhcccccCcC--CCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCC
Q 004614 571 GRLWEGKDALLYAIGSISTSCHKDISAE--DPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 571 ~r~~~~ke~vl~aL~~l~~~~~~~~~~~--~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~~ 638 (742)
.|.+++..|...+.+-..--|.+ -.|...-++++++..+.+++.-+++..+.+ ++..+|.
T Consensus 197 -----~R~g~l~~l~reeNNdsh~d~~~rlI~p~~gL~VR~l~a~l~dndiLV~R~~lDl---Ll~~fp~ 258 (1618)
T COG5221 197 -----LRTGVLNSLMREENNDSHMDWSERLILPHAGLMVRALCAGLGDNDILVVRNCLDL---LLFVFPD 258 (1618)
T ss_pred -----ccchHHHHHHHHhcCcchhchhhhccCCCcchhHHHHHhhcCCCceeeehhHHHH---HHHHccc
Confidence 23445555544333221111110 134456788899999988888887765544 4566664
No 335
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=20.88 E-value=2.5e+02 Score=27.41 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=30.0
Q ss_pred hhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 004614 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL 157 (742)
Q Consensus 113 ~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~ 157 (742)
....++..+-....|++..||.++.-+.+.+....++.+.+++..
T Consensus 152 ~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 152 DFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 445566666666899999999999998888775444444444433
No 336
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=20.33 E-value=2.1e+02 Score=27.72 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=43.3
Q ss_pred hhhhhHHHhhhcCCCCHH-HHHHHH--HHHHHhccCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccCCc
Q 004614 114 LRLLIPKLVRFQYDPDKN-VQDAMA--HIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF 190 (742)
Q Consensus 114 l~~lip~L~~~~~Dp~~~-VR~a~~--~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~ 190 (742)
.++.+|++++...--++. |+++.. ..|..+- ....|+.|-....| ..||.-|+.. ++..+.
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~----------p~~AL~LL~~~f~~--~~VR~yAv~~----L~~~~d 106 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPIS----------PEDALELLSPNFPD--PFVRQYAVRR----LESLSD 106 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTT----------HHHHHHCTSTT-----HHHHHHHHHH----HCTS-H
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCC----------HHHHHHHHHhhccH--HHHHHHHHHH----HHHcCc
Confidence 456888888876666665 554432 2354321 11122222233333 6899988854 455677
Q ss_pred hhhhhHHHHHHHHH
Q 004614 191 DQVGKHLRRIWTAA 204 (742)
Q Consensus 191 ~~l~~~L~~i~~~l 204 (742)
+++.-|+++++..+
T Consensus 107 ~~l~~yLpQLVQaL 120 (184)
T PF00613_consen 107 EELLFYLPQLVQAL 120 (184)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHh
Confidence 88999999997766
No 337
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=20.28 E-value=7.1e+02 Score=23.23 Aligned_cols=94 Identities=11% Similarity=0.062 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHhcCCCChhhHH----HHHHHHHHHHhhcccccCcCCCCchHHHHHH
Q 004614 535 SKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKEVPGRLWEGKD----ALLYAIGSISTSCHKDISAEDPTTPFAIVDM 609 (742)
Q Consensus 535 vR~~Aa~~lg~La~~~g~-~~~~~~~~l~p~L~~~l~~r~~~~ke----~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~ 609 (742)
+=..+..++-.++-++.+ .|.|.+-++..--...+.....+++. ....-+..+.+..+.-+ .+|..-+++.
T Consensus 37 vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf----~~Y~~~ll~~ 112 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLF----TPYFSYLLDN 112 (153)
T ss_pred HHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 444555677777777776 67776666666555544332222222 22222333333333222 3455556665
Q ss_pred HHHHHhhhC----------HHHHHHHHHHHHHH
Q 004614 610 VSSACRKKI----------KKYREAAFSCLEQV 632 (742)
Q Consensus 610 l~~~~~~~~----------~~~R~~a~~~Lg~l 632 (742)
..+.++.-+ ...++..+.+|..-
T Consensus 113 ~~~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~ 145 (153)
T PF08146_consen 113 AVDLLKQFNSSKTESKSKSWELWRLVLSTLQKC 145 (153)
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHH
Confidence 555444332 45666666666553
No 338
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=20.22 E-value=7.6e+02 Score=23.56 Aligned_cols=62 Identities=19% Similarity=0.043 Sum_probs=42.1
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 004614 160 DDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (742)
Q Consensus 160 ~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~ 227 (742)
+.+..-+.+++.-+|.+++..+...... ..+...++..+.+.++|.+.-||.|.+-+++.++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~ 169 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYG 169 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3445555566545566666666555443 3467788888888899999999999866666554
Done!