Query 004614
Match_columns 742
No_of_seqs 365 out of 1235
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 18:45:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004614.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1910-1914//hhsearch_pdb/004614hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 304.3 47.9 630 58-730 109-837 (852)
2 1u6g_C TIP120 protein, CAND1; 1.0 1 1 300.7 36.8 560 74-654 48-699 (1230)
3 1u6g_C TIP120 protein, CAND1; 1.0 1 1 290.2 37.7 422 58-484 194-739 (1230)
4 2bpt_A Importin beta-1 subunit 1.0 1 1 275.5 52.4 566 60-637 116-766 (861)
5 2bpt_A Importin beta-1 subunit 1.0 1 1 274.0 52.0 524 87-653 236-835 (861)
6 4fdd_A Transportin-1; heat rep 1.0 1 1 273.2 55.6 571 89-695 104-763 (852)
7 1qgr_A Protein (importin beta 1.0 1 1 268.0 57.2 543 57-638 107-726 (876)
8 1qgr_A Protein (importin beta 1.0 1 1 256.7 51.0 554 57-653 192-851 (876)
9 1b3u_A Protein (protein phosph 1.0 1 1 254.2 41.5 502 89-654 62-568 (588)
10 1b3u_A Protein (protein phosph 1.0 1 1 245.8 42.5 512 76-655 12-530 (588)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=304.32 Aligned_cols=630 Identities=14% Similarity=0.149 Sum_probs=438.6
Q ss_pred CHHHHHHHHHHHC---CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHCCCCC
Q ss_conf 5089999986421---98148999999861011113456677239999999555330-----433206688861028999
Q 004614 58 STYKELCNLANEM---GQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK-----PHLRLLIPKLVRFQYDPD 129 (742)
Q Consensus 58 ~tyk~l~~lA~~~---g~p~lv~~fm~l~~~~~~w~~r~gA~~~l~~I~~~~~~~l~-----~~l~~lip~L~~~~~Dp~ 129 (742)
.+..++..++... .||+++..+.....+. .+..|+++..+|+.|++..++.+. .++..++|.++..+.|++
T Consensus 109 ~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 187 (852)
T 4fdd_A 109 TVGILITTIASKGELQNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS 187 (852)
T ss_dssp HHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999998648135689999999987099-98999999999999999857875634313329999999999856797
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 87999999998995369778899999999999988508987357999999999975149910444679999999999804
Q 004614 130 KNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (742)
Q Consensus 130 ~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~ 209 (742)
+.||.++..+...++...+.....+++.+++.++..++++++++|..+|.+|+.+++..+ +.+.+|+..+++.+...+.
T Consensus 188 ~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-~~~~~~l~~l~~~l~~~~~ 266 (852)
T 4fdd_A 188 PKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-DRLLPHMHNIVEYMLQRTQ 266 (852)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCC
T ss_conf 899999999999998646387998899999999987179977899999999999998577-9899889999999998706
Q ss_pred CCCHHHHHHHHHHHHHHHH-----------------HHHHHH------------CC--CC------C--CC---------
Q ss_conf 7848899999999999999-----------------998630------------14--55------7--62---------
Q 004614 210 DIKETVRTAGDKLCRSVTS-----------------LTIRLC------------DV--TL------T--EI--------- 241 (742)
Q Consensus 210 D~~~~VR~aA~~~~~~l~~-----------------~~~r~~------------~~--~~------~--~~--------- 241 (742)
|..+.||..|...+.++.+ .+.... +. .. . ..
T Consensus 267 ~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~ 346 (852)
T 4fdd_A 267 DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALD 346 (852)
T ss_dssp CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99689999999999998603657988788898899999987578676799866984432224564011169999999999
Q ss_pred ----CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf ----1068599987689864488997178889999999999973083655421347999999503644577879999743
Q 004614 242 ----SDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (742)
Q Consensus 242 ----~~~~~~l~~iLP~Ll~~gl~~~~~~vr~~a~~~l~~la~~~g~~l~p~l~~Li~~Ll~~ls~~e~~~~~~~~~~a~ 317 (742)
..+..++..++|++.+ .+.++++.+|..++.+++.+++..++.+.||++.++|.++..+.+..+.+....
T Consensus 347 ~la~~~~~~~~~~l~~~l~~-~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a----- 420 (852)
T 4fdd_A 347 VLANVYRDELLPHILPLLKE-LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT----- 420 (852)
T ss_dssp HHHHHHGGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHH-----
T ss_pred HHHHHCCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-----
T ss_conf 99874618789999999999-855998899999999999998635688998799999999987179988999999-----
Q ss_pred HCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 107513556677653216891899999999513----9457954889999999700797417669999999999834463
Q 004614 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVV----DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393 (742)
Q Consensus 318 ~~~~~~~~id~~r~~~~~~s~l~~al~~~~~~~----d~~~l~~lip~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l 393 (742)
..+++.+.... ....+..++|.+.+.+++. ....|..++..+..++...+..+
T Consensus 421 ----------------------~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l 477 (852)
T 4fdd_A 421 ----------------------CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTEL 477 (852)
T ss_dssp ----------------------HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGG
T ss_pred ----------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------------9999999988611047899999999999998589-88899999999999999736766
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
Q ss_conf 420898999986655103639999999999999884179-----8889999999997505----8813588999999998
Q 004614 394 KPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-----PSQAQKLIEETAALHI----DDKNSQISCAILLKSY 464 (742)
Q Consensus 394 ~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~ai~~L~~~~~-----~~~l~~li~~l~~~~~----~d~~~r~~~~~~l~~i 464 (742)
.||.+.+++.++..+ ++.+.........+++.++...+ ++.+..+++.+.+.+. .+...+ .+.+++..+
T Consensus 478 ~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i 555 (852)
T 4fdd_A 478 VPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSV 555 (852)
T ss_dssp GGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHH
T ss_conf 767999999999999-883747999999999999997424313678999988999999873330469999-999999999
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHHHHHHHHHHCCCCHHHHHHHH--HHHHHHHH
Q ss_conf 845056553354324468667645-----------------98267999999999985589715587219--97999999
Q 004614 465 SSVASDVLSGYHAVIVPVIFISRF-----------------EDDKYVSDLFEELWEENTSGDRVTLQLYL--GEIVSLIC 525 (742)
Q Consensus 465 ~~~~~~~~~~~~~~ilP~l~~~~~-----------------d~~~~v~~~~~~~~~~~~~~~~~~i~~yl--~ei~~~l~ 525 (742)
++..+..|.+|.+.++|.++.... .++++++....+....++.+.+..+.+|+ +.+++++.
T Consensus 556 ~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~ 635 (852)
T 4fdd_A 556 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMY 635 (852)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99974867988999999999999999999987533886668876119999999997899987476998836771899999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 62049998999999999999999837112433999999999764998722399999999999963110137689995688
Q 004614 526 EGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFA 605 (742)
Q Consensus 526 ~~L~s~sw~vR~~AA~~Lg~La~~~g~~l~~~~~~l~p~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~ 605 (742)
.++.+.+..+|+.+..++++++..++..+.+|++.++|.+.+.+....+++|..++.+++.++...++.+ .++...
T Consensus 636 ~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~----~p~~~~ 711 (852)
T 4fdd_A 636 QCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM----QPYIPM 711 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGG----GGGTHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_conf 9838998449999999999999981688898799999999987694206899999999999999711767----878999
Q ss_pred HHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999998220--998999999999999998299---714785879999630576666788889999877544335567
Q 004614 606 IVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRD---PKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESV 680 (742)
Q Consensus 606 iv~~l~~~~~~~--~~~~r~~A~~~Lg~l~~~~~~---~~~~~~~~~il~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~ 680 (742)
+++.+.+-+++. ...++..++.++|++....++ +++.+++.+++..+....... -..++-...+......+.+
T Consensus 712 il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~--e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 712 VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNE--EKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSH--HHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHCHHH
T ss_conf 99999998579988720778899999999986889767558999999999865366607--9999999999999869186
Q ss_pred CCCHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 76335665555667874--230568861001466656328999971044222
Q 004614 681 SAPLDKVLDCVSSCIHV--AHVNDIIEQEKNLVQLFTISLSPGFPWTGFRKR 730 (742)
Q Consensus 681 ~~p~~~i~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (742)
..+. +..++.++.- .-.+++...+.++++-|...+ |+.-|+.+...
T Consensus 790 ~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~ 837 (852)
T 4fdd_A 790 VIQD---FIFFCDAVASWINPKDDLRDMFCKILHGFKNQV-GDENWRRFSDQ 837 (852)
T ss_dssp TGGG---HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHGGG
T ss_pred HHHH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf 8888---999999987068997899999999999998767-72019999872
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=300.68 Aligned_cols=560 Identities=12% Similarity=0.089 Sum_probs=381.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH----
Q ss_conf 4899999986101111345667723999999955533043320668886102899987999999998995369778----
Q 004614 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR---- 149 (742)
Q Consensus 74 ~lv~~fm~l~~~~~~w~~r~gA~~~l~~I~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~---- 149 (742)
.++..++....+ ..|..|++|+.+++.+++++++ +++..+++.|+..+.|+++.||.++..+.+.++.....
T Consensus 48 ~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~---~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999998669-9989999999999999975879---899999999999866983889999999999999967974444
Q ss_pred --HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf --899999999999988508-98735799999999997514991044467999999999980478488999999999999
Q 004614 150 --TIDEHLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (742)
Q Consensus 150 --~i~~~~~~il~~Ll~~l~-~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l 226 (742)
....+.+.+++.|+..+. +++|++|++++.++..+++..+ +.+.+|++++++.++..+.|.+..||.+|..++..+
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~-~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG-GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC-SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 4117889999999999987578846799999999999999827-677887999999999987599689999999999999
Q ss_pred HHH------------HHHHH-CCCC-CC---------------CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999------------98630-1455-76---------------2106859998768986448899717888999999999
Q 004614 227 TSL------------TIRLC-DVTL-TE---------------ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMK 277 (742)
Q Consensus 227 ~~~------------~~r~~-~~~~-~~---------------~~~~~~~l~~iLP~Ll~~gl~~~~~~vr~~a~~~l~~ 277 (742)
... ++..+ +... .. +....+++..++|+++. .+.++++++|..++.++..
T Consensus 203 ~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~-~l~d~~~~vR~~a~~~l~~ 281 (1230)
T 1u6g_C 203 VMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK-FCNVDDDELREYCIQAFES 281 (1230)
T ss_dssp TTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHH-HHSSCCTTTHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHH
T ss_conf 985689999999999999861677556899999999999998689899889999999999-8668977899999999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH-HH----HH-------------HCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 997308365542134799999950364457787999-97----43-------------1075135566776532168918
Q 004614 278 LVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE-LH----AA-------------NAGIQTEKLENLRISIAKGSPM 339 (742)
Q Consensus 278 la~~~g~~l~p~l~~Li~~Ll~~ls~~e~~~~~~~~-~~----a~-------------~~~~~~~~id~~r~~~~~~s~l 339 (742)
+++.+++.+.||++.++|.+++.+.. +|.. ++-. .. .+ .|...++....+|.. .
T Consensus 282 l~~~~~~~~~~~l~~li~~ll~~l~~-d~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~------A 353 (1230)
T 1u6g_C 282 FVRRCPKEVYPHVSTIINICLKYLTY-DPNY-NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA------A 353 (1230)
T ss_dssp HHHCTTCCCHHHHHHHHHHHTTCCCC-C-------------------------------------CTTHHHHH------H
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHCC-CCCC-CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHH------H
T ss_conf 99978487777689999999998278-9988-87644110112233446530110013666455567799999------9
Q ss_pred HHHHHHHHHHCC---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC-------------------CCCCCH
Q ss_conf 999999995139---4579548899999997007974176699999999998344-------------------634208
Q 004614 340 WDTLDLCINVVD---TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGM-------------------DIKPYT 397 (742)
Q Consensus 340 ~~al~~~~~~~d---~~~l~~lip~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~-------------------~l~p~~ 397 (742)
.++++.+....+ .+.++.++|.+.+.++.. ....|..+...+..++...+. .+.+++
T Consensus 354 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (1230)
T 1u6g_C 354 AKCLDAVVSTRHEMLPEFYKTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV 432 (1230)
T ss_dssp HHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999997466679999999989999871798-6579999999999999972424343467520135645599999874
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHC-HH
Q ss_conf 989999866551036399999999999998841798---88999999999750588---135889999999988450-56
Q 004614 398 SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP---SQAQKLIEETAALHIDD---KNSQISCAILLKSYSSVA-SD 470 (742)
Q Consensus 398 ~~ll~~Ll~~l~~D~~~~Vr~~~~~ai~~L~~~~~~---~~l~~li~~l~~~~~~d---~~~r~~~~~~l~~i~~~~-~~ 470 (742)
+.+++.+...+ +|++..+|..++.+++.++...++ +.+..+++.+...+.+. ...|..++..+..+.+.. ++
T Consensus 433 ~~ll~~l~~~l-~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~ 511 (1230)
T 1u6g_C 433 PNIVKALHKQM-KEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ 511 (1230)
T ss_dssp THHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHH
T ss_conf 69999999986-13778799999999999999761105777999999999997487885168999999999999838988
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC----C---CCHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHH
Q ss_conf 553354324468667645982679999999999855----8---971558721997999999620--4999899999999
Q 004614 471 VLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT----S---GDRVTLQLYLGEIVSLICEGI--ASSSWSSKRKSAK 541 (742)
Q Consensus 471 ~~~~~~~~ilP~l~~~~~d~~~~v~~~~~~~~~~~~----~---~~~~~i~~yl~ei~~~l~~~L--~s~sw~vR~~AA~ 541 (742)
.|.+|.+.++|.++....|....++......+.+++ . ..+..+.+|++.+++.+...+ .+.+..+|..|+.
T Consensus 512 ~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~ 591 (1230)
T 1u6g_C 512 VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAIS 591 (1230)
T ss_dssp GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 78867999999999997142468999999999999987167555653232789999999999987326998899999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHH
Q ss_conf 99999998371124339999999997649987223999999999999631101376899956889999999982209989
Q 004614 542 AICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKY 621 (742)
Q Consensus 542 ~Lg~La~~~g~~l~~~~~~l~p~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~ 621 (742)
++|.++...|+.+.++++.+++.|.+.+... ..|...+.+++.++..... .+..++.+.+++.+.+.+++++..+
T Consensus 592 ~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~---~~~~~~~~~i~~~L~~~l~~~~~~~ 666 (1230)
T 1u6g_C 592 CMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLK---IDLRPVLGEGVPILASFLRKNQRAL 666 (1230)
T ss_dssp HHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSC---CCCHHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 9999999827032443889999999884453--0599999999999818564---4368889999999999998678889
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 999999999999982997147858799996305
Q 004614 622 REAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCG 654 (742)
Q Consensus 622 r~~A~~~Lg~l~~~~~~~~~~~~~~~il~~~~~ 654 (742)
|..++.+++.++...++.-..+.+.+++..+.+
T Consensus 667 r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ 699 (1230)
T 1u6g_C 667 KLGTLSALDILIKNYSDSLTAAMIDAVLDELPP 699 (1230)
T ss_dssp HHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999604333898999999999876
No 3
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=290.16 Aligned_cols=422 Identities=16% Similarity=0.179 Sum_probs=239.0
Q ss_pred CHHHHHHHHHHHCCCH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 5089999986421981---4899999986101111345667723999999955533043320668886102899987999
Q 004614 58 STYKELCNLANEMGQP---DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (742)
Q Consensus 58 ~tyk~l~~lA~~~g~p---~lv~~fm~l~~~~~~w~~r~gA~~~l~~I~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~ 134 (742)
.+.++|..++...++. .++..++....+...+..|++++-+++.|++..++.+.||+..++|.++..+.|+++.||+
T Consensus 194 ~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~ 273 (1230)
T 1u6g_C 194 RTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELRE 273 (1230)
T ss_dssp HHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999998568999999999999986167755689999999999999868989988999999999986689778999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-------------------------------------CCCHHHHHHH
Q ss_conf 999998995369778899999999999988508-------------------------------------9873579999
Q 004614 135 AMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSG-------------------------------------SRLWRSREAS 177 (742)
Q Consensus 135 a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~-------------------------------------~~~wrvR~aa 177 (742)
++..+|..++...+..+..|++.+++.++..+. +..|++|+++
T Consensus 274 ~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A 353 (1230)
T 1u6g_C 274 YCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAA 353 (1230)
T ss_dssp HHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 99999999999784877776899999999982789988876441101122334465301100136664555677999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CC---------CCCCHHHHH
Q ss_conf 99999975149910444679999999999804784889999999999999999863014-55---------762106859
Q 004614 178 CLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV-TL---------TEISDARQS 247 (742)
Q Consensus 178 ~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~-~~---------~~~~~~~~~ 247 (742)
+.++..+....+ +.+.+|+..+++.+...+.|.++.||.++..++..+.+..- .... .. +........
T Consensus 354 ~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (1230)
T 1u6g_C 354 AKCLDAVVSTRH-EMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR-PVQSWLCDPDAMEQGETPLTMLQSQ 431 (1230)
T ss_dssp HHHHHHHHTTCC-TTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC-CC------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999997466-67999999998999987179865799999999999999724-2434346752013564559999987
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCH--HHHH-HHHH---HHHHCCC
Q ss_conf 99876898644889971788899999999999730836554213479999995036445--7787-9999---7431075
Q 004614 248 MDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLED--QGLN-YIEL---HAANAGI 321 (742)
Q Consensus 248 l~~iLP~Ll~~gl~~~~~~vr~~a~~~l~~la~~~g~~l~p~l~~Li~~Ll~~ls~~e~--~~~~-~~~~---~a~~~~~ 321 (742)
++.++|.+.. .+.++++.+|..++.+++.+++..+..+.||++.+++.+++.+.+..+ .+.- .+.. -....+
T Consensus 432 l~~ll~~l~~-~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~- 509 (1230)
T 1u6g_C 432 VPNIVKALHK-QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS- 509 (1230)
T ss_dssp TTHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC-
T ss_conf 4699999999-86137787999999999999997611057779999999999974878851689999999999998389-
Q ss_pred CHHHH--------HHHHHHHCCCCC-----HHHHHHHHHHHCCH----------HHHHHHHHHHHHHHHCC-CCCCHHHH
Q ss_conf 13556--------677653216891-----89999999951394----------57954889999999700-79741766
Q 004614 322 QTEKL--------ENLRISIAKGSP-----MWDTLDLCINVVDT----------ESLDQLVPHLARLVRSG-IGLNTRVG 377 (742)
Q Consensus 322 ~~~~i--------d~~r~~~~~~s~-----l~~al~~~~~~~d~----------~~l~~lip~L~~~l~~~-~~~~~r~~ 377 (742)
.+.+ ..+-.......+ ...++..+++.++. +.++.++|.+++.++.. .....|..
T Consensus 510 -~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~ 588 (1230)
T 1u6g_C 510 -PQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKER 588 (1230)
T ss_dssp -GGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf -8878867999999999997142468999999999999987167555653232789999999999987326998899999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC---------------------------------------CCCHHHHH
Q ss_conf 999999999983446342089899998665510---------------------------------------36399999
Q 004614 378 VASFISLLVQKIGMDIKPYTSMLLRLLFPVVKE---------------------------------------EKSAAAKR 418 (742)
Q Consensus 378 a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~---------------------------------------D~~~~Vr~ 418 (742)
++..++.++...|..+.++.+.+++.+...+.+ +.+..+|.
T Consensus 589 a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~ 668 (1230)
T 1u6g_C 589 AISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKL 668 (1230)
T ss_dssp HHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999999998270324438899999998844530599999999999818564436888999999999999867888999
Q ss_pred HHHHHHHHHHHHCCHH----HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 9999999988417988----89999999997505-881358899999999884505655335432446866
Q 004614 419 AFASACASVLKYATPS----QAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIF 484 (742)
Q Consensus 419 ~~~~ai~~L~~~~~~~----~l~~li~~l~~~~~-~d~~~r~~~~~~l~~i~~~~~~~~~~~~~~ilP~l~ 484 (742)
.++.+++.+++..+.. .+..++..+..... +|...+..+..++..+.+..+..+.++...++|.++
T Consensus 669 ~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~ 739 (1230)
T 1u6g_C 669 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELI 739 (1230)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999999996043338989999999998763575418789999999999988491267776776899999
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=275.53 Aligned_cols=566 Identities=12% Similarity=0.097 Sum_probs=284.5
Q ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHCCCC--CH
Q ss_conf 89999986421----981489999998610111134566772399999995553---3043320668886102899--98
Q 004614 60 YKELCNLANEM----GQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDA---LKPHLRLLIPKLVRFQYDP--DK 130 (742)
Q Consensus 60 yk~l~~lA~~~----g~p~lv~~fm~l~~~~~~w~~r~gA~~~l~~I~~~~~~~---l~~~l~~lip~L~~~~~Dp--~~ 130 (742)
...|..++... .||+++..++....+...+..|++++..++.|++..+.. +.++...+++.+...+.|+ ++
T Consensus 116 ~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 195 (861)
T 2bpt_A 116 AQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195 (861)
T ss_dssp HHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99999999846764554999999999872689789999999999999972784356789889999999998415799987
Q ss_pred HHHHHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHH
Q ss_conf 799999999899536977889--99999999999885089873579999999999751499104446799-999999998
Q 004614 131 NVQDAMAHIWKSLVADPKRTI--DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR-RIWTAAFRA 207 (742)
Q Consensus 131 ~VR~a~~~iw~~lv~d~~~~i--~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~-~i~~~l~~~ 207 (742)
.||.++..++..++....... ....+.+++.+...+.+++|++|+.+|.++..+++..+ +.+.+|+. .+|+.+...
T Consensus 196 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~ 274 (861)
T 2bpt_A 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY-TFMKPYMEQALYALTIAT 274 (861)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG-GGCHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999998706766899999999998659988999999999999999988-999998899999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCCCHHHHHHHHHHHHHHHCCCC-------CCHHHHHHHHH
Q ss_conf 0478488999999999999999986301--------45576210685999876898644889-------97178889999
Q 004614 208 MDDIKETVRTAGDKLCRSVTSLTIRLCD--------VTLTEISDARQSMDIVLPFLLAEGIL-------SKVDSISKASI 272 (742)
Q Consensus 208 l~D~~~~VR~aA~~~~~~l~~~~~r~~~--------~~~~~~~~~~~~l~~iLP~Ll~~gl~-------~~~~~vr~~a~ 272 (742)
+.|..+.||..|...+..+......... +.. .+......+..++|.++.. +. ++.+.+|..+.
T Consensus 275 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~il~~ll~~-l~~~~~d~~d~~~~~r~~a~ 352 (861)
T 2bpt_A 275 MKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQ-SYNFALSSIKDVVPNLLNL-LTRQNEDPEDDDWNVSMSAG 352 (861)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCC-CCCHHHHHHHHHHHHHHHH-TTCCCCC-CCCCCHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCHHHHHH
T ss_conf 737727899999999999998788643332103577325-6999999998899999999-87066530124686899999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--CCHHHH--------HHHHHHHCCCCC----
Q ss_conf 999999973083655421347999999503644577879999743107--513556--------677653216891----
Q 004614 273 GVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG--IQTEKL--------ENLRISIAKGSP---- 338 (742)
Q Consensus 273 ~~l~~la~~~g~~l~p~l~~Li~~Ll~~ls~~e~~~~~~~~~~a~~~~--~~~~~i--------d~~r~~~~~~s~---- 338 (742)
.++..++...|+. .++.+++.+.+.+.+.+...+.......+... ...+.+ +.+...+...++
T Consensus 353 ~~L~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~ 429 (861)
T 2bpt_A 353 ACLQLFAQNCGNH---ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429 (861)
T ss_dssp HHHHHHHHHHGGG---GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHCCHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9999999874086---8999999999875799726999999999999859987888998999999999882899599999
Q ss_pred -HHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHH
Q ss_conf -8999999995139-----457954889999999700797417669999999999834----463420898999986655
Q 004614 339 -MWDTLDLCINVVD-----TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG----MDIKPYTSMLLRLLFPVV 408 (742)
Q Consensus 339 -l~~al~~~~~~~d-----~~~l~~lip~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g----~~l~p~~~~ll~~Ll~~l 408 (742)
...+++.+...+. .+.++.++|.+.+.+++. .+.+..++..+..++..++ ..+.||.+.+++.++..+
T Consensus 430 ~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l 507 (861)
T 2bpt_A 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA 507 (861)
T ss_dssp HHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999873540487888999999999976447--28999999999999986231354246899999999999998
Q ss_pred HC-CCCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHC----------C------CCHHHHHHHHHHHHHHHHC
Q ss_conf 10-363999999999999988417988---89999999997505----------8------8135889999999988450
Q 004614 409 KE-EKSAAAKRAFASACASVLKYATPS---QAQKLIEETAALHI----------D------DKNSQISCAILLKSYSSVA 468 (742)
Q Consensus 409 ~~-D~~~~Vr~~~~~ai~~L~~~~~~~---~l~~li~~l~~~~~----------~------d~~~r~~~~~~l~~i~~~~ 468 (742)
.+ |.+..||..+..+++.++...+++ .+..+++.+.+.+. . ....|..+..++..+.+..
T Consensus 508 ~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~ 587 (861)
T 2bpt_A 508 NRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587 (861)
T ss_dssp TCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57586158999999999999997626569999999999999999887532013885567779999999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 565533543244686676459826-7999999999985589715587219979999996204999899999999999999
Q 004614 469 SDVLSGYHAVIVPVIFISRFEDDK-YVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLG 547 (742)
Q Consensus 469 ~~~~~~~~~~ilP~l~~~~~d~~~-~v~~~~~~~~~~~~~~~~~~i~~yl~ei~~~l~~~L~s~sw~vR~~AA~~Lg~La 547 (742)
+..+.+|.+.++|.++....+.+. .++......+..+....+..+.+|++.+++.+...+.+.++.+|..+..++++++
T Consensus 588 ~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 588 PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 56347899999999999974678875799999999999999766099999999999998865566789999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH--------
Q ss_conf 98371124339999999997649987--22399999999999963110137689995688999999998220--------
Q 004614 548 EILGESLSNYHHVLLESIMKEVPGRL--WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK-------- 617 (742)
Q Consensus 548 ~~~g~~l~~~~~~l~p~L~~~l~~r~--~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~-------- 617 (742)
...|..+.++++.++|.+.+.+.... .+.|+.++.+++.++..+++.+ .++.+.+++.+.+.+..+
T Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~----~~~l~~~l~~l~~~~~~~~~~~d~d~ 743 (861)
T 2bpt_A 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADF----IPYLNDIMALCVAAQNTKPENGTLEA 743 (861)
T ss_dssp HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGG----HHHHHHHHHHHHHHHTCCCSSSSHHH
T ss_pred HHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 87454031119999999999727865567665999999999999840508----99999999999999736789997588
Q ss_pred ---CHHHHHHHHHHHHHHHHHCC
Q ss_conf ---99899999999999999829
Q 004614 618 ---IKKYREAAFSCLEQVIKAFR 637 (742)
Q Consensus 618 ---~~~~r~~A~~~Lg~l~~~~~ 637 (742)
...+|..++.+++.++...+
T Consensus 744 ~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 744 LDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999982
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=274.01 Aligned_cols=524 Identities=12% Similarity=0.090 Sum_probs=359.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH-----------------
Q ss_conf 11134566772399999995553304332-066888610289998799999999899536977-----------------
Q 004614 87 VSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPK----------------- 148 (742)
Q Consensus 87 ~~w~~r~gA~~~l~~I~~~~~~~l~~~l~-~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~----------------- 148 (742)
..|..|++++-.|+.+++..++.+.+++. .+++.+.....|+++.||..+...|..++....
T Consensus 236 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (861)
T 2bpt_A 236 EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSY 315 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 98899999999999999998899999889999999999873772789999999999999878864333210357732569
Q ss_pred HHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 88999999999999885089-------87357999999999975149910444679999999999804784889999999
Q 004614 149 RTIDEHLDLIFDDLLIQSGS-------RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDK 221 (742)
Q Consensus 149 ~~i~~~~~~il~~Ll~~l~~-------~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~ 221 (742)
.....++..+++.++..+.+ .+|.+|.+++.+++.+....+ + ..++.+++.+...+.|.+..+|++|..
T Consensus 316 ~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~---~~~~~l~~~l~~~l~~~~~~~r~~a~~ 391 (861)
T 2bpt_A 316 NFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-N---HILEPVLEFVEQNITADNWRNREAAVM 391 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-G---GGHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC-H---HHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999988999999998706653012468689999999999998740-8---689999999998757997269999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHH
Q ss_conf 99999999986301455762106859998768986448899717888999999999997308365--5421347999999
Q 004614 222 LCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAI--RPHLSDLVSCMLE 299 (742)
Q Consensus 222 ~~~~l~~~~~r~~~~~~~~~~~~~~~l~~iLP~Ll~~gl~~~~~~vr~~a~~~l~~la~~~g~~l--~p~l~~Li~~Ll~ 299 (742)
++..+.. .+. +....+.+..++|.++. .+.+.++.||..++.+++++++..+..+ .+|++.++|.++.
T Consensus 392 ~l~~i~~----~~~-----~~~~~~~l~~il~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 392 AFGSIMD----GPD-----KVQRTYYVHQALPSILN-LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHTSS----SSC-----HHHHHHHHHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHH
T ss_pred HHHHHHC----CCC-----HHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999985----998-----78889989999999998-8289959999999999999998735404878889999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHCCC-C
Q ss_conf 5036445778799997431075135566776532168918999999995139-------4579548899999997007-9
Q 004614 300 SLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD-------TESLDQLVPHLARLVRSGI-G 371 (742)
Q Consensus 300 ~ls~~e~~~~~~~~~~a~~~~~~~~~id~~r~~~~~~s~l~~al~~~~~~~d-------~~~l~~lip~L~~~l~~~~-~ 371 (742)
.+.+. +.+.... ..++..+++..+ .+.++.+++.+.+.+++.. .
T Consensus 462 ~l~~~-~~v~~~a---------------------------~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~ 513 (861)
T 2bpt_A 462 GLQDH-PKVATNC---------------------------SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE 513 (861)
T ss_dssp HHTSC-HHHHHHH---------------------------HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCG
T ss_pred HHCCC-HHHHHHH---------------------------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 76447-2899999---------------------------9999999986231354246899999999999998575861
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHHHHHCCHH---
Q ss_conf 741766999999999983446342089899998665510--------------363999999999999988417988---
Q 004614 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKE--------------EKSAAAKRAFASACASVLKYATPS--- 434 (742)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~--------------D~~~~Vr~~~~~ai~~L~~~~~~~--- 434 (742)
...|..+..+++.++...+..+.||.+.+++.++..+.+ +....++..+..+++.+++..++.
T Consensus 514 ~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 593 (861)
T 2bpt_A 514 FNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593 (861)
T ss_dssp GGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58999999999999997626569999999999999999887532013885567779999999999999999985563478
Q ss_pred HHHHHHHHHHHHHCC-CC-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 899999999975058-81-3588999999998845056553354324468667645982679999999999855897155
Q 004614 435 QAQKLIEETAALHID-DK-NSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVT 512 (742)
Q Consensus 435 ~l~~li~~l~~~~~~-d~-~~r~~~~~~l~~i~~~~~~~~~~~~~~ilP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~ 512 (742)
.+..+++.+...+.. +. ..|..+..+++.++...+..|.+|++.++|.++....+++..++....++...+....+..
T Consensus 594 ~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~ 673 (861)
T 2bpt_A 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED 673 (861)
T ss_dssp GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH
T ss_conf 99999999999974678875799999999999999766099999999999998865566789999999999999874540
Q ss_pred HHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-----------HHHHHH
Q ss_conf 87219979999996204999--89999999999999998371124339999999997649987-----------223999
Q 004614 513 LQLYLGEIVSLICEGIASSS--WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL-----------WEGKDA 579 (742)
Q Consensus 513 i~~yl~ei~~~l~~~L~s~s--w~vR~~AA~~Lg~La~~~g~~l~~~~~~l~p~L~~~l~~r~-----------~~~Ke~ 579 (742)
+.+|++.+++.+...+.+++ ..+|..+..++|.++...|+.+.+|++.++|.+.+.+.... +..|+.
T Consensus 674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~ 753 (861)
T 2bpt_A 674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEA 753 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 31119999999999727865567665999999999999840508999999999999997367899975889999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHCCCCCH----H-HHHHHHHH
Q ss_conf 99999999963110137689995688999999998220----998999999999999998299714----7-85879999
Q 004614 580 LLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK----IKKYREAAFSCLEQVIKAFRDPKF----F-NIIFPLLF 650 (742)
Q Consensus 580 vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~----~~~~r~~A~~~Lg~l~~~~~~~~~----~-~~~~~il~ 650 (742)
+++++..++...++. .....++.+.+++.+.+.+.+. +..+|..|+.+++.++..+++..+ . +++..++.
T Consensus 754 ~l~~~~~i~~~l~~~-~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~ 832 (861)
T 2bpt_A 754 VLDAYVGIVAGLHDK-PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIK 832 (861)
T ss_dssp HHHHHHHHHHHTTTC-HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHH
T ss_conf 999999999998267-7889999999999999987485557869999999999999998828824889872679999999
Q ss_pred HHH
Q ss_conf 630
Q 004614 651 EMC 653 (742)
Q Consensus 651 ~~~ 653 (742)
.+.
T Consensus 833 ~l~ 835 (861)
T 2bpt_A 833 RTR 835 (861)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 885
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=273.22 Aligned_cols=571 Identities=12% Similarity=0.134 Sum_probs=379.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHH
Q ss_conf 1345667723999999955533043320668886102899987999999998995369778899-----99999999998
Q 004614 89 LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID-----EHLDLIFDDLL 163 (742)
Q Consensus 89 w~~r~gA~~~l~~I~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~-----~~~~~il~~Ll 163 (742)
...|+.++..++.|+... ....-+.++|.|+....++++.+|+++..++..++.+.+...+ .+++.+++.++
T Consensus 104 ~~vr~~~a~~i~~ia~~~---~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~ 180 (852)
T 4fdd_A 104 PLIRATVGILITTIASKG---ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL 180 (852)
T ss_dssp HHHHHHHHHHHHHHHHHT---TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHH
T ss_conf 999999999999999864---81356899999999870999899999999999999985787563431332999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 85089873579999999999751499104446799999999998047848899999999999999998630145576210
Q 004614 164 IQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISD 243 (742)
Q Consensus 164 ~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~ 243 (742)
..+.++++.+|.+++.++..++...+ ..+.++++.+++.++..+.|..+.||..|...+..+...... .
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~-~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~----------~ 249 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRT-QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD----------R 249 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTC-HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH----------H
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHH----------H
T ss_conf 98567978999999999999986463-879988999999999871799778999999999999985779----------8
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 68599987689864488997178889999999999973--0836554213479999995036445778799997431075
Q 004614 244 ARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG--AGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGI 321 (742)
Q Consensus 244 ~~~~l~~iLP~Ll~~gl~~~~~~vr~~a~~~l~~la~~--~g~~l~p~l~~Li~~Ll~~ls~~e~~~~~~~~~~a~~~~~ 321 (742)
..+++..++++++. .+.+.++++|..+++.|..+++. ..+.+.||++.++|.+++.+...+.+.. -+..+.. .
T Consensus 250 ~~~~l~~l~~~l~~-~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~---~~~~d~~-e 324 (852)
T 4fdd_A 250 LLPHMHNIVEYMLQ-RTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDII---LLKGDVE-G 324 (852)
T ss_dssp HGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHH---HHHC-----
T ss_pred HHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHCCCCC-C
T ss_conf 99889999999998-70699689999999999998603657988788898899999987578676799---8669844-3
Q ss_pred CHHH-----HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 1355-----66776532168918999999995139457954889999999700797417669999999999834463420
Q 004614 322 QTEK-----LENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY 396 (742)
Q Consensus 322 ~~~~-----id~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lip~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~ 396 (742)
++++ .-.+|.. ...+++.+....++++++.++|.+.+.+++. .+..|.+++..++.++...+..+.||
T Consensus 325 d~~~dd~~~~~~vr~~------a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~ 397 (852)
T 4fdd_A 325 GSGGDDTISDWNLRKC------SAAALDVLANVYRDELLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPY 397 (852)
T ss_dssp --------CCCCHHHH------HHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred CCCCCCCCCCCHHHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 2224564011169999------9999999987461878999999999985599-88999999999999986356889987
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCHHH
Q ss_conf 8989999866551036399999999999998841798----889999999997505-88135889999999988450565
Q 004614 397 TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP----SQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDV 471 (742)
Q Consensus 397 ~~~ll~~Ll~~l~~D~~~~Vr~~~~~ai~~L~~~~~~----~~l~~li~~l~~~~~-~d~~~r~~~~~~l~~i~~~~~~~ 471 (742)
.+.+++.++..+ +|++..||..++.++|.++...+. ..+..+++.+..... .+...|..++.++..+++..+..
T Consensus 398 l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 398 LPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999871-7998899999999999999886110478999999999999985898889999999999999973676
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHH----------------------------HHHHHHHH-----------------HHC
Q ss_conf 533543244686676459826799----------------------------99999999-----------------855
Q 004614 472 LSGYHAVIVPVIFISRFEDDKYVS----------------------------DLFEELWE-----------------ENT 506 (742)
Q Consensus 472 ~~~~~~~ilP~l~~~~~d~~~~v~----------------------------~~~~~~~~-----------------~~~ 506 (742)
+.+|.+.+++.++....+.+.... +.+.+.|+ .+.
T Consensus 477 l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~ 556 (852)
T 4fdd_A 477 LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVA 556 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 67679999999999998837479999999999999974243136789999889999998733304699999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCC-----------------CCCHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHH
Q ss_conf 89715587219979999996204-----------------99989999999999999998371124339--999999997
Q 004614 507 SGDRVTLQLYLGEIVSLICEGIA-----------------SSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMK 567 (742)
Q Consensus 507 ~~~~~~i~~yl~ei~~~l~~~L~-----------------s~sw~vR~~AA~~Lg~La~~~g~~l~~~~--~~l~p~L~~ 567 (742)
...+..+.+|++.+++.+...+. .++..++.++..+++.++..+|..+.+++ +.+++.+.+
T Consensus 557 ~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~ 636 (852)
T 4fdd_A 557 TALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ 636 (852)
T ss_dssp HHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99748679889999999999999999999875338866688761199999999978999874769988367718999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 64998722399999999999963110137689995688999999998220998999999999999998299714785879
Q 004614 568 EVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFP 647 (742)
Q Consensus 568 ~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~r~~A~~~Lg~l~~~~~~~~~~~~~~~ 647 (742)
.+.++..++|+.++..++.++..++..+ .++.+.+++.+.+.+...+..+|..|++++|.++...+. ++.+.+..
T Consensus 637 ~l~~~~~~vr~~a~~~l~~l~~~~~~~~----~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~~~ 711 (852)
T 4fdd_A 637 CMQDKMPEVRQSSFALLGDLTKACFQHV----KPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQPYIPM 711 (852)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCGGGT----GGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-GGGGGTHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 8389984499999999999999816888----987999999999876942068999999999999997117-67878999
Q ss_pred HH---HHHHCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCH-HHHHHHHHHHH
Q ss_conf 99---96305766667888899998775443----355677633-56655556678
Q 004614 648 LL---FEMCGSTALNKSGQVPLPSDASKEES----ADESVSAPL-DKVLDCVSSCI 695 (742)
Q Consensus 648 il---~~~~~~~~~~~~~~~~a~~~~a~~~~----~~~~~~~p~-~~i~~~~~~a~ 695 (742)
++ ..+..+... ..+...+++.+.+ .+.....|| .++++.+..++
T Consensus 712 il~~L~~~l~~~~~----~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l 763 (852)
T 4fdd_A 712 VLHQLVEIINRPNT----PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSL 763 (852)
T ss_dssp HHHHHHHHHTCSSC----CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHH
T ss_conf 99999998579988----72077889999999998688976755899999999986
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=268.02 Aligned_cols=543 Identities=12% Similarity=0.074 Sum_probs=370.6
Q ss_pred CCHHHHHHHHHHH----CCCHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHCCCC--
Q ss_conf 5508999998642----198148999999861011-1134566772399999995-5533043320668886102899--
Q 004614 57 LSTYKELCNLANE----MGQPDLIYKFMDLANYQV-SLNSKRGAAFGFSKIAKQA-GDALKPHLRLLIPKLVRFQYDP-- 128 (742)
Q Consensus 57 ~~tyk~l~~lA~~----~g~p~lv~~fm~l~~~~~-~w~~r~gA~~~l~~I~~~~-~~~l~~~l~~lip~L~~~~~Dp-- 128 (742)
......+..++.. -.||+++..++....+.. .+..|+++..+|+.+++.. ++.+.++++.+++.+..+..|+
T Consensus 107 ~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (876)
T 1qgr_A 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (876)
T ss_dssp CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999846762256889999999870889879999999999999987458766786799999999986167999
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHH
Q ss_conf 987999999998995369778899--9999999999885089873579999999999751499104446799-9999999
Q 004614 129 DKNVQDAMAHIWKSLVADPKRTID--EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR-RIWTAAF 205 (742)
Q Consensus 129 ~~~VR~a~~~iw~~lv~d~~~~i~--~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~-~i~~~l~ 205 (742)
++.||..+..++..++........ ...+.+++.+...+.+.++++|.++|.+|..+++..+ +.+.+|+. .+++.++
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~~~ 265 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-QYMETYMGPALFAITI 265 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG-GGCHHHHTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 889999999999999999999887178999999999987179988999999999999999869-9999887789999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHH--------C---CCCCCCCHHHHHHHHHHHHHHHCCCC-------CCHHHH
Q ss_conf 98047848899999999999999998630--------1---45576210685999876898644889-------971788
Q 004614 206 RAMDDIKETVRTAGDKLCRSVTSLTIRLC--------D---VTLTEISDARQSMDIVLPFLLAEGIL-------SKVDSI 267 (742)
Q Consensus 206 ~~l~D~~~~VR~aA~~~~~~l~~~~~r~~--------~---~~~~~~~~~~~~l~~iLP~Ll~~gl~-------~~~~~v 267 (742)
..+.|..+.||..|...+..+.+...... + +...........+..++|.+++. +. ++++.+
T Consensus 266 ~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~-l~~~~~d~~~~~~~~ 344 (876)
T 1qgr_A 266 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT-LTKQDENDDDDDWNP 344 (876)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH-TTCCCSSCCTTCCCH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCHH
T ss_conf 9963873499999999999998878767665100112477754201899999898870799987-531334445452179
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 89999999999973083655421347999999503644577879999743107513556677653216891899999999
Q 004614 268 SKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCI 347 (742)
Q Consensus 268 r~~a~~~l~~la~~~g~~l~p~l~~Li~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~id~~r~~~~~~s~l~~al~~~~ 347 (742)
|..+..++..+++..++. .++.+++.+.+.+.+.++.++ ... ..+++.+.
T Consensus 345 r~~a~~~l~~l~~~~~~~---~~~~~l~~l~~~l~~~~~~~r-~~a--------------------------~~~l~~i~ 394 (876)
T 1qgr_A 345 CKAAGVCLMLLATCCEDD---IVPHVLPFIKEHIKNPDWRYR-DAA--------------------------VMAFGCIL 394 (876)
T ss_dssp HHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHTTCSSHHHH-HHH--------------------------HHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHCCCCCHHHH-HHH--------------------------HHHHHHHH
T ss_conf 999999999999877586---699999999988469982899-999--------------------------99999997
Q ss_pred HHCCH----HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 51394----5795488999999970079741766999999999983446--34208989999866551036399999999
Q 004614 348 NVVDT----ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMD--IKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (742)
Q Consensus 348 ~~~d~----~~l~~lip~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~--l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~ 421 (742)
...+. ..++.++|.+...++++ ....|..++.+++.++..++.. ..+|.+.+++.++..+ +|. ..|+..++
T Consensus 395 ~~~~~~~~~~~~~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l-~~~-~~v~~~a~ 471 (876)
T 1qgr_A 395 EGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL-SAE-PRVASNVC 471 (876)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT-TSC-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHH-CCC-HHHHHHHH
T ss_conf 48877789999999999999986799-7899999999999999857201144777999999999987-588-88999999
Q ss_pred HHHHHHHHHCC-----------------HHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 99999884179-----------------88899999999975058----8135889999999988450565533543244
Q 004614 422 SACASVLKYAT-----------------PSQAQKLIEETAALHID----DKNSQISCAILLKSYSSVASDVLSGYHAVIV 480 (742)
Q Consensus 422 ~ai~~L~~~~~-----------------~~~l~~li~~l~~~~~~----d~~~r~~~~~~l~~i~~~~~~~~~~~~~~il 480 (742)
.+++.++...+ .+.+..+++.+...+.. +...|..+.++++.+.+..+..+.++...++
T Consensus 472 ~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~ 551 (876)
T 1qgr_A 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTT 551 (876)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999850201234444555403215769999999999972767420469999999999999977431189999999
Q ss_pred HHHHHHHC-----------CCC----HHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHH
Q ss_conf 68667645-----------982----6799999999998558971-5587219979999996204999--8999999999
Q 004614 481 PVIFISRF-----------EDD----KYVSDLFEELWEENTSGDR-VTLQLYLGEIVSLICEGIASSS--WSSKRKSAKA 542 (742)
Q Consensus 481 P~l~~~~~-----------d~~----~~v~~~~~~~~~~~~~~~~-~~i~~yl~ei~~~l~~~L~s~s--w~vR~~AA~~ 542 (742)
|.++.... +.+ .+++......+..++...+ ..+.+|++.+++.+...+.+.+ +.+|..+..+
T Consensus 552 ~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~ 631 (876)
T 1qgr_A 552 LVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMA 631 (876)
T ss_dssp HHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99999999999887124886359999999999999999999982854205789999999999998536888850899999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--HCH
Q ss_conf 999999837112433999999999764998-72239999999999996311013768999568899999999822--099
Q 004614 543 ICKLGEILGESLSNYHHVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK--KIK 619 (742)
Q Consensus 543 Lg~La~~~g~~l~~~~~~l~p~L~~~l~~r-~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~--~~~ 619 (742)
++.++...|..+.+|++.++|.|.+.+... .+++|..++.+++.++..++..+. ++.+.+++.+.+.++. .+.
T Consensus 632 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~ 707 (876)
T 1qgr_A 632 VSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII----PFCDEVMQLLLENLGNENVHR 707 (876)
T ss_dssp HHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTCTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCCH
T ss_conf 9999999876099999999999999875865087999999999999998878546----459999999999748712338
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q ss_conf 8999999999999998299
Q 004614 620 KYREAAFSCLEQVIKAFRD 638 (742)
Q Consensus 620 ~~r~~A~~~Lg~l~~~~~~ 638 (742)
.+|..+++++|.++...++
T Consensus 708 ~~~~~~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 708 SVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp GGHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHCH
T ss_conf 7639999999999997035
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=256.68 Aligned_cols=554 Identities=12% Similarity=0.081 Sum_probs=386.2
Q ss_pred CCHHHHHHHHHHHCCCH--------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHCCC
Q ss_conf 55089999986421981--------489999998610111134566772399999995553304332-066888610289
Q 004614 57 LSTYKELCNLANEMGQP--------DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYD 127 (742)
Q Consensus 57 ~~tyk~l~~lA~~~g~p--------~lv~~fm~l~~~~~~w~~r~gA~~~l~~I~~~~~~~l~~~l~-~lip~L~~~~~D 127 (742)
..+.+++..++..+++. .++..+..+. ....+..|++++-.|+.+++..++.+.|++. .+++.++....|
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (876)
T 1qgr_A 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (876)
T ss_dssp HHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999998871789999999999871-79988999999999999999869999988778999999999638
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHH
Q ss_conf 998799999999899536977---------------------8899999999999988508-------987357999999
Q 004614 128 PDKNVQDAMAHIWKSLVADPK---------------------RTIDEHLDLIFDDLLIQSG-------SRLWRSREASCL 179 (742)
Q Consensus 128 p~~~VR~a~~~iw~~lv~d~~---------------------~~i~~~~~~il~~Ll~~l~-------~~~wrvR~aa~~ 179 (742)
+++.||..+...|..++.... .....++..+++.++..+. +.+|++|.++..
T Consensus 271 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~ 350 (876)
T 1qgr_A 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 73499999999999998878767665100112477754201899999898870799987531334445452179999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99997514991044467999999999980478488999999999999999986301455762106859998768986448
Q 004614 180 SLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEG 259 (742)
Q Consensus 180 Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l~~iLP~Ll~~g 259 (742)
+++.+.+..+ + ..++.+++.+...+.|....||.+|..++..+.. .+. +....+.+..++|.++. .
T Consensus 351 ~l~~l~~~~~-~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~----~~~-----~~~~~~~~~~~l~~l~~-~ 416 (876)
T 1qgr_A 351 CLMLLATCCE-D---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE----GPE-----PSQLKPLVIQAMPTLIE-L 416 (876)
T ss_dssp HHHHHHHHHG-G---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS----SSC-----HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHCC-H---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC----CCC-----HHHHHHHHHHHHHHHHH-H
T ss_conf 9999998775-8---6699999999988469982899999999999974----887-----77899999999999999-8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 89971788899999999999730836--5542134799999950364457787999974310751355667765321689
Q 004614 260 ILSKVDSISKASIGVVMKLVKGAGIA--IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGS 337 (742)
Q Consensus 260 l~~~~~~vr~~a~~~l~~la~~~g~~--l~p~l~~Li~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~id~~r~~~~~~s 337 (742)
+.++++.||..++.+++++++..+.. ..+|++.+++.++..+.+. +.+....
T Consensus 417 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a------------------------- 470 (876)
T 1qgr_A 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNV------------------------- 470 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHH-------------------------
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHH-------------------------
T ss_conf 67997899999999999999857201144777999999999987588-8899999-------------------------
Q ss_pred CHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 1899999999513-----------------94579548899999997007--9741766999999999983446342089
Q 004614 338 PMWDTLDLCINVV-----------------DTESLDQLVPHLARLVRSGI--GLNTRVGVASFISLLVQKIGMDIKPYTS 398 (742)
Q Consensus 338 ~l~~al~~~~~~~-----------------d~~~l~~lip~L~~~l~~~~--~~~~r~~a~~~l~~L~~~~g~~l~p~~~ 398 (742)
..++..++... -...++.++|.|.+.+.... ....|..+...++.++...|..+.+|..
T Consensus 471 --~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~ 548 (876)
T 1qgr_A 471 --CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQ 548 (876)
T ss_dssp --HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHH
T ss_pred --HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf --999999999850201234444555403215769999999999972767420469999999999999977431189999
Q ss_pred HHHHHHHHHHHC----------CCC----HHHHHHHHHHHHHHHHHCC-HH---HHHHHHHHHHHHHCCC---CHHHHHH
Q ss_conf 899998665510----------363----9999999999999884179-88---8999999999750588---1358899
Q 004614 399 MLLRLLFPVVKE----------EKS----AAAKRAFASACASVLKYAT-PS---QAQKLIEETAALHIDD---KNSQISC 457 (742)
Q Consensus 399 ~ll~~Ll~~l~~----------D~~----~~Vr~~~~~ai~~L~~~~~-~~---~l~~li~~l~~~~~~d---~~~r~~~ 457 (742)
.+++.++..+.. +.+ +.++..+..+++.++...+ +. .+..+++.+...+... ...|..+
T Consensus 549 ~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a 628 (876)
T 1qgr_A 549 KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDA 628 (876)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999999999999887124886359999999999999999999982854205789999999999998536888850899
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC--CCHH
Q ss_conf 999999884505655335432446866764598-2679999999999855897155872199799999962049--9989
Q 004614 458 AILLKSYSSVASDVLSGYHAVIVPVIFISRFED-DKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS--SSWS 534 (742)
Q Consensus 458 ~~~l~~i~~~~~~~~~~~~~~ilP~l~~~~~d~-~~~v~~~~~~~~~~~~~~~~~~i~~yl~ei~~~l~~~L~s--~sw~ 534 (742)
..+++.++...+..|.+|.+.++|.++....+. +..++....+.+..++...+..+.+|.+++++.+...+.+ .+..
T Consensus 629 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 708 (876)
T 1qgr_A 629 LMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRS 708 (876)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99999999998760999999999999998758650879999999999999988785464599999999997487123387
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHHHHCCCCC------CC
Q ss_conf 999999999999998371124339999999997649987-----------2239999999999996311013------76
Q 004614 535 SKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL-----------WEGKDALLYAIGSISTSCHKDI------SA 597 (742)
Q Consensus 535 vR~~AA~~Lg~La~~~g~~l~~~~~~l~p~L~~~l~~r~-----------~~~Ke~vl~aL~~l~~~~~~~~------~~ 597 (742)
+|..+..++|.++...|..+.++++.++|.|.+.+..+. .+.|+.++.++..++...+... ..
T Consensus 709 ~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~ 788 (876)
T 1qgr_A 709 VKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVM 788 (876)
T ss_dssp GHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGG
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 63999999999999703527999999999999998555899975889999999999999999999997457555554388
Q ss_pred CCCCCHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHCCCCCHH-----HHHHHHHHHHH
Q ss_conf 89995688999999998220--9989999999999999982997147-----85879999630
Q 004614 598 EDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRDPKFF-----NIIFPLLFEMC 653 (742)
Q Consensus 598 ~~~~~~~~iv~~l~~~~~~~--~~~~r~~A~~~Lg~l~~~~~~~~~~-----~~~~~il~~~~ 653 (742)
...++.+.|++.+.+.+.++ +..+|..|+.++|.++...+++.+. ..+.+++....
T Consensus 789 ~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l 851 (876)
T 1qgr_A 789 LVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp GSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHH
T ss_conf 999999999999999865888888999999999999998828488999970489999999875
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=254.18 Aligned_cols=502 Identities=12% Similarity=0.114 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 13456677239999999555330433206688861028999879999999989953697788999999999999885089
Q 004614 89 LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGS 168 (742)
Q Consensus 89 w~~r~gA~~~l~~I~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~ 168 (742)
+..|+.++..|+.+.+..+. ..+...++|.|.....|+++.||+++..++..+....+. +...+.+++.+.....+
T Consensus 62 ~~vr~~~~~~L~~~~~~~~~--~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~--~~~~~~l~~~l~~l~~~ 137 (588)
T 1b3u_A 62 DEVLLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDLEAHFVPLVKRLAGG 137 (588)
T ss_dssp HHHHHHHHHHHTTCSGGGTS--GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HHHHHTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCC
T ss_conf 89999999999778760585--989999899999987476079999999999999997999--99999999999998507
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 87357999999999975149910444679999999999804784889999999999999999863014557621068599
Q 004614 169 RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM 248 (742)
Q Consensus 169 ~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~~~~~~~~l 248 (742)
++|++|.+++..++.+....+ + .+..++++.+...++|..+.||.+|...+..+.... . .....
T Consensus 138 ~~~~~R~~a~~~l~~~~~~~~-~---~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~----~--------~~~~~ 201 (588)
T 1b3u_A 138 DWFTSRTSACGLFSVCYPRVS-S---AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL----E--------LDNVK 201 (588)
T ss_dssp SSHHHHHHHGGGHHHHTTTSC-H---HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS----C--------HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCC-H---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH----C--------HHHHH
T ss_conf 771799999999999998569-9---999999999999848997889999999899999981----6--------77679
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 98768986448899717888999999999997308365542134799999950364457787999974310751355667
Q 004614 249 DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLEN 328 (742)
Q Consensus 249 ~~iLP~Ll~~gl~~~~~~vr~~a~~~l~~la~~~g~~l~p~l~~Li~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~id~ 328 (742)
..++|.++. .+.++++.+|..++.+++.+++..++. .+.+.++|.+...+.+....+
T Consensus 202 ~~l~~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~v-------------------- 258 (588)
T 1b3u_A 202 SEIIPMFSN-LASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRV-------------------- 258 (588)
T ss_dssp HTHHHHHHH-HHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHH--------------------
T ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHCCCCCHHH--------------------
T ss_conf 999999998-824992889998999999999857988--888789999999806997789--------------------
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHH
Q ss_conf 76532168918999999995139457-9548899999997007974176699999999998344634--20898999986
Q 004614 329 LRISIAKGSPMWDTLDLCINVVDTES-LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK--PYTSMLLRLLF 405 (742)
Q Consensus 329 ~r~~~~~~s~l~~al~~~~~~~d~~~-l~~lip~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~--p~~~~ll~~Ll 405 (742)
|.. ..++++.+....+.+. .+.++|.+.+.+++. ....|..++..++.++...+.... ++.+.+++.+.
T Consensus 259 -R~~------a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~ 330 (588)
T 1b3u_A 259 -RYM------VADKFTELQKAVGPEITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK 330 (588)
T ss_dssp -HHH------HHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHH
T ss_pred -HHH------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf -999------99999999998195210558999999985899-5899999998799999972744436579999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 6551036399999999999998841798889-999999997505-88135889999999988450565533543244686
Q 004614 406 PVVKEEKSAAAKRAFASACASVLKYATPSQA-QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVI 483 (742)
Q Consensus 406 ~~l~~D~~~~Vr~~~~~ai~~L~~~~~~~~l-~~li~~l~~~~~-~d~~~r~~~~~~l~~i~~~~~~~~~~~~~~ilP~l 483 (742)
..+ +|.+..||+.++.+++.++...+.+.. ..+++.+...+. ++++.|..+...+..+....+.. .+.+.++|.+
T Consensus 331 ~~l-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l 407 (588)
T 1b3u_A 331 ELV-SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAI 407 (588)
T ss_dssp HHH-TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHH
T ss_pred HHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHH
T ss_conf 986-1998899999999999998886276788889999999837983689999999899999754989--8988889999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 67645982679999999999855897155872199799999962049998999999999999999837112433999999
Q 004614 484 FISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLE 563 (742)
Q Consensus 484 ~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~ei~~~l~~~L~s~sw~vR~~AA~~Lg~La~~~g~~l~~~~~~l~p 563 (742)
.....|.+..+|....+.+..+....+. ..+.+.+++.+...+.|.+|.+|.+|+.+++.++...|..+ +++.++|
T Consensus 408 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp 483 (588)
T 1b3u_A 408 VELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIP 483 (588)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHH--HHHHHHH
T ss_conf 9983599813999999999999988098--98999999999988259819999999999999999968445--7888999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99976499872239999999999996311013768999568899999999822099899999999999999829971478
Q 004614 564 SIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFN 643 (742)
Q Consensus 564 ~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~r~~A~~~Lg~l~~~~~~~~~~~ 643 (742)
.|.+.+.+..|.+|..++.+++.++..++.. .+.+.+++.+.+.+++.+..+|..++++|+.+....+...+.+
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~------~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 557 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQD------ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 557 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH------HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 9999831898799999999999999766989------9999999999866789986279999999999999865364599
Q ss_pred HHHHHHHHHHC
Q ss_conf 58799996305
Q 004614 644 IIFPLLFEMCG 654 (742)
Q Consensus 644 ~~~~il~~~~~ 654 (742)
.+.|.+..+..
T Consensus 558 ~~~p~l~~l~~ 568 (588)
T 1b3u_A 558 EVKPILEKLTQ 568 (588)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
T ss_conf 99999998747
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=245.82 Aligned_cols=512 Identities=13% Similarity=0.086 Sum_probs=366.6
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999986101111345667723999999955533043320668886102899987999999998995369778899999
Q 004614 76 IYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL 155 (742)
Q Consensus 76 v~~fm~l~~~~~~w~~r~gA~~~l~~I~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~ 155 (742)
+..++....+. .+..|+.|+.+++.+....+.. .....++|.|.... |+++.||+++..+++.++.... -..+.
T Consensus 12 i~~l~~~l~s~-~~~~R~~A~~~l~~i~~~~~~~--~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~--~~~~~ 85 (588)
T 1b3u_A 12 IAVLIDELRNE-DVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVG--GPEYV 85 (588)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHTHHHHHHHSCHH--HHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGT--SGGGG
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCC--CHHHH
T ss_conf 99999985062-1999999997199999986979--89998998898755-7858999999999977876058--59899
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998850898735799999999997514991044467999999999980478488999999999999999986301
Q 004614 156 DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCD 235 (742)
Q Consensus 156 ~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~ 235 (742)
..+++.|...+.++++.+|+.++.+++.+.+..+.+.+.+++ ++.+.+...+....+|.+|...+..+.. .+
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l---~~~l~~l~~~~~~~~R~~a~~~l~~~~~----~~- 157 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF---VPLVKRLAGGDWFTSRTSACGLFSVCYP----RV- 157 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTH---HHHHHHHHTCSSHHHHHHHGGGHHHHTT----TS-
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH---HHHHHHHHCCCCCHHHHHHHHHHHHHHH----HC-
T ss_conf 998999999874760799999999999999979999999999---9999998507771799999999999998----56-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 45576210685999876898644889971788899999999999730836554213479999995036445778799997
Q 004614 236 VTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELH 315 (742)
Q Consensus 236 ~~~~~~~~~~~~l~~iLP~Ll~~gl~~~~~~vr~~a~~~l~~la~~~g~~l~p~l~~Li~~Ll~~ls~~e~~~~~~~~~~ 315 (742)
.....+.++|.+.. .+.+++++||..++.+++.+++..|.. .+.+.++|.+..++++.++.
T Consensus 158 --------~~~~~~~l~~~l~~-l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~-------- 218 (588)
T 1b3u_A 158 --------SSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDS-------- 218 (588)
T ss_dssp --------CHHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHH--------
T ss_pred --------CHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHCCCCHH--------
T ss_conf --------99999999999999-848997889999999899999981677--67999999999882499288--------
Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 431075135566776532168918999999995139457-9548899999997007974176699999999998344634
Q 004614 316 AANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTES-LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK 394 (742)
Q Consensus 316 a~~~~~~~~~id~~r~~~~~~s~l~~al~~~~~~~d~~~-l~~lip~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~ 394 (742)
+|.. ..++++.+....+.+. .+.++|.+.+.+++ ..+.+|..++..++.+....+...
T Consensus 219 -------------vr~~------a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~- 277 (588)
T 1b3u_A 219 -------------VRLL------AVEACVNIAQLLPQEDLEALVMPTLRQAAED-KSWRVRYMVADKFTELQKAVGPEI- 277 (588)
T ss_dssp -------------HHTT------HHHHHHHHHHHSCHHHHHHHTHHHHHHHHTC-SSHHHHHHHHHTHHHHHHHHCHHH-
T ss_pred -------------HHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf -------------9998------9999999998579888887899999998069-977899999999999999819521-
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHC
Q ss_conf 2089899998665510363999999999999988417988-----89999999997505-88135889999999988450
Q 004614 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-----QAQKLIEETAALHI-DDKNSQISCAILLKSYSSVA 468 (742)
Q Consensus 395 p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~ai~~L~~~~~~~-----~l~~li~~l~~~~~-~d~~~r~~~~~~l~~i~~~~ 468 (742)
+.+.+++.++..+ +|.+..||+.++.+++.++...+.+ ....+++.+..... .++..|..++.+++.++...
T Consensus 278 -~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 355 (588)
T 1b3u_A 278 -TKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355 (588)
T ss_dssp -HHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH
T ss_pred -CHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -0558999999985-89958999999987999999727444365799999999999861998899999999999998886
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 56553354324468667645982679999999999855897155872199799999962049998999999999999999
Q 004614 469 SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGE 548 (742)
Q Consensus 469 ~~~~~~~~~~ilP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~ei~~~l~~~L~s~sw~vR~~AA~~Lg~La~ 548 (742)
+... ..+.++|.+.....|++++||......+..+....+ ...+.+.+++.+...+.+.+|.+|..++.+++.++.
T Consensus 356 ~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 356 GKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp CHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC--HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 2767--888899999998379836899999998999997549--898988889999998359981399999999999998
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 83711243399999999976499872239999999999996311013768999568899999999822099899999999
Q 004614 549 ILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSC 628 (742)
Q Consensus 549 ~~g~~l~~~~~~l~p~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~r~~A~~~ 628 (742)
.+|..+ +.+.++|.+.+.+.+..+++|+.++.+++.++...+... +.+.+++.+.+...+.+..+|..++.+
T Consensus 432 ~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~------~~~~llp~l~~~~~~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 432 QLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW------AHATIIPKVLAMSGDPNYLHRMTTLFC 503 (588)
T ss_dssp HHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH------HHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred HCCHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 809898--999999999988259819999999999999999968445------788899999998318987999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 999999829971478587999963057
Q 004614 629 LEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (742)
Q Consensus 629 Lg~l~~~~~~~~~~~~~~~il~~~~~~ 655 (742)
++.++...+...+.+.+.|.+.....+
T Consensus 504 l~~l~~~~~~~~~~~~~~~~l~~~l~d 530 (588)
T 1b3u_A 504 INVLSEVCGQDITTKHMLPTVLRMAGD 530 (588)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHGGGC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 999997669899999999999866789
Done!