BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004615
(742 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/661 (58%), Positives = 488/661 (73%), Gaps = 12/661 (1%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------KHRINIIDTPGHVD 132
G N+KIGEVH+G ATMDWMEQEQERGITITSAATT +W+ HRINIIDTPGHVD
Sbjct: 35 GVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVD 94
Query: 133 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRT 192
FT+EVER++RVLDGA+ ++ +V GV+PQSETVWRQA+KY VPRI FVNKMDR+GANF +
Sbjct: 95 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKV 154
Query: 193 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKM 252
+ I T LGA P+ +QL +GAE++F GVVDLVKMKAI W+ + G F YEDIPA++ ++
Sbjct: 155 VNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVEL 214
Query: 253 AQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKG 312
A E+ +IE+ E +E ME YL G E E IK +R+ + + V CGSAFKNKG
Sbjct: 215 ANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKG 274
Query: 313 VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 372
VQ +LDAV+DYLPSP+D+PA+ G + + ER ASDDEPF+ LAFKI +DPFVG+LT
Sbjct: 275 VQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT 334
Query: 373 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITG 432
F RVY+G +++G VLN+ K +ER GR+++MHAN RE++K KD TG
Sbjct: 335 FFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTG 394
Query: 433 ETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEIN 492
+TLCD D PI+LERM+FP+PVI +A+EPKTKAD +KM L +LA+EDPSF DEE N
Sbjct: 395 DTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESN 454
Query: 493 QTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESI-SKVSEVKYVHKKQSGGQGQ 551
QT+I GMGELHL+IIVDR+KREF VEANVG PQV YRE+I KV++V+ H KQSGG+GQ
Sbjct: 455 QTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQ 514
Query: 552 FADITVRFEPMEAGS---GYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDV 608
+ + + P+E GS GYEF ++IKGG +P EYIP V KG++E + G LAG+PVVD+
Sbjct: 515 YGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDM 574
Query: 609 RAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGD 668
L GSYHDVDSS LAF+LAA AF+EG +KA P +LEPIMKVEV TPEE+ GDVIGD
Sbjct: 575 GIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGD 634
Query: 669 LNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQH 728
L+ RRG + + G+K + A VPL+EMF Y + LR +TKGRASY M+ K+D P +
Sbjct: 635 LSRRRGMLKGQESEVTGVK-IHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSN 693
Query: 729 I 729
+
Sbjct: 694 V 694
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/661 (58%), Positives = 488/661 (73%), Gaps = 12/661 (1%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------KHRINIIDTPGHVD 132
G N+KIGEVH+G ATMDWMEQEQERGITITSAATT +W+ HRINIIDTPGHVD
Sbjct: 34 GVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVD 93
Query: 133 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRT 192
FT+EVER++RVLDGA+ ++ +V GV+PQSETVWRQA+KY VPRI FVNKMDR+GANF +
Sbjct: 94 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKV 153
Query: 193 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKM 252
+ I T LGA P+ +QL +GAE++F GVVDLVKMKAI W+ + G F YEDIPA++ ++
Sbjct: 154 VNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVEL 213
Query: 253 AQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKG 312
A E+ +IE+ E +E ME YL G E E IK +R+ + + V CGSAFKNKG
Sbjct: 214 ANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKG 273
Query: 313 VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 372
VQ +LDAV+DYLPSP+D+PA+ G + + ER ASDDEPF+ LAFKI +DPFVG+LT
Sbjct: 274 VQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT 333
Query: 373 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITG 432
F RVY+G +++G VLN+ K +ER GR+++MHAN RE++K KD TG
Sbjct: 334 FFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTG 393
Query: 433 ETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEIN 492
+TLCD D PI+LERM+FP+PVI +A+EPKTKAD +KM L +LA+EDPSF DEE N
Sbjct: 394 DTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESN 453
Query: 493 QTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESI-SKVSEVKYVHKKQSGGQGQ 551
QT+I GMGELHL+IIVDR+KREF VEANVG PQV YRE+I KV++V+ H KQSGG+GQ
Sbjct: 454 QTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQ 513
Query: 552 FADITVRFEPMEAGS---GYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDV 608
+ + + P+E GS GYEF ++IKGG +P EYIP V KG++E + G LAG+PVVD+
Sbjct: 514 YGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDM 573
Query: 609 RAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGD 668
L GSYHDVDSS LAF+LAA AF+EG +KA P +LEPIMKVEV TPEE+ GDVIGD
Sbjct: 574 GIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGD 633
Query: 669 LNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQH 728
L+ RRG + + G+K + A VPL+EMF Y + LR +TKGRASY M+ K+D P +
Sbjct: 634 LSRRRGMLKGQESEVTGVK-IHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSN 692
Query: 729 I 729
+
Sbjct: 693 V 693
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/672 (56%), Positives = 487/672 (72%), Gaps = 15/672 (2%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-------NKHRINIIDTPGHVD 132
G N+K+GEVH+G AT DWM QEQERGITITSAA TT+W + +R+N+IDTPGHVD
Sbjct: 38 GVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVD 97
Query: 133 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRT 192
FT+EVER+LRVLDGA+ +F +GVEPQSETVWRQA+KYGVPRI +VNKMDR GANF R
Sbjct: 98 FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRV 157
Query: 193 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKM 252
+ I LG P+ VQL +GAE+NF G VDL+KMKAI W+ ++ G + E+IPA L+ +
Sbjct: 158 VEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDL 217
Query: 253 AQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKG 312
A+E+RS M+E E ++E M YLE E E IK+ +R T+A VP +CGS+FKNKG
Sbjct: 218 AEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKG 277
Query: 313 VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 372
V +LDAV+DYLP+P ++PA+KG P++ ER A D+EPF+ LAFKI +DPFVG+LT
Sbjct: 278 VPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLT 337
Query: 373 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITG 432
F RVY+G LS+G VLN+ KGKKER+GR+++MHAN RE++K KD TG
Sbjct: 338 FARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTG 397
Query: 433 ETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEIN 492
+TLC + PI+LERMDFP+PVI VA+EPKTKAD +KM L KLAQEDPSF DEE
Sbjct: 398 DTLCSIEKPIILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESG 457
Query: 493 QTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVS-EVKYVHKKQSGGQGQ 551
QT+I GMGELHL+IIVDR+KREF VEAN+G PQV YRE+I+K + E++ +QSGG+GQ
Sbjct: 458 QTIISGMGELHLDIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQ 517
Query: 552 FADITVRF------EPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPV 605
F +RF E G F++E+ GG VPKEYIP + KG+EE M NGV+AG+P+
Sbjct: 518 FGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPL 577
Query: 606 VDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDV 665
+ ++A + DGSYHDVDS+ +AF++AA A ++ +K G K+LEPIMKVEVVTPE+++GDV
Sbjct: 578 IGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDV 637
Query: 666 IGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVV 725
+GDLN RRG I D G KV+ A VPL EMF Y + +R M++GRASY M+ +K+
Sbjct: 638 MGDLNRRRGLIQGMEDTVSG-KVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEA 696
Query: 726 PQHIQNQLAAKE 737
P +I L K+
Sbjct: 697 PSNIVEALVKKQ 708
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/656 (56%), Positives = 474/656 (72%), Gaps = 7/656 (1%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGEVHEG ATMD+MEQE+ERGITIT+A TT +W HRINIIDTPGHVDFT+EVER
Sbjct: 37 GRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVER 96
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
++RVLDGAI +FDS GVEPQSETVWRQA+KY VPRI F NKMD+ GA+ + +
Sbjct: 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
LGA+P+V+QLP+G ED F G++D+++MKA + G +LG IP A+EY +
Sbjct: 157 LGARPVVMQLPIGREDTFSGIIDVLRMKAYTY-GNDLGTDIREIPIPEEYLDQAREYHEK 215
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
++E + D+ M YLEG EP EE + IRKGTI PV GSA KNKGVQ LLDA
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDA 275
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
VVDYLPSPLD+P +KGT PE +E + P A LAFKIM+DP+VG LTF+RVY+G
Sbjct: 276 VVDYLPSPLDIPPIKGTTPEG--EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
TL++GSYV N KG+KER+ RLL MHAN RE+V+ K+TITG+TL D
Sbjct: 334 TLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGED 393
Query: 440 HP-ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG 498
P ++LE ++ P+PVI VAIEPKTKAD +K++ L +LA+EDP+F S E QT+I G
Sbjct: 394 APRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISG 453
Query: 499 MGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 558
MGELHLEIIVDRLKREFKV+ANVG PQV YRE+I+K +V+ +Q+GG+GQ+ + ++
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIK 513
Query: 559 FEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYH 618
EP+ GSG+EF + I GG +PKEYIP V KG+EE M +G L GFPVVD++ L DGSYH
Sbjct: 514 VEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYH 573
Query: 619 DVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678
+VDSS +AF++A A +E ++K P +LEPIM+VEV TPEE++GDVIGDLN+RRGQI
Sbjct: 574 EVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQI-- 631
Query: 679 FGDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQL 733
G +P G +V+ A VPLAEMF Y + LR T+GR S++M + VP+ +Q +L
Sbjct: 632 LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/656 (56%), Positives = 474/656 (72%), Gaps = 7/656 (1%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGEVHEG ATMD+MEQE+ERGITIT+A TT +W HRINIIDTPGHVDFT+EVER
Sbjct: 37 GRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVER 96
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
++RVLDGAI +FDS GVEPQSETVWRQA+KY VPRI F NKMD+ GA+ + +
Sbjct: 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
LGA+P+V+QLP+G ED F G++D+++MKA + G +LG IP A+EY +
Sbjct: 157 LGARPVVMQLPIGREDTFSGIIDVLRMKAYTY-GNDLGTDIREIPIPEEYLDQAREYHEK 215
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
++E + D+ M YLEG EP EE + IRKGTI PV GSA KNKGVQ LLDA
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDA 275
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
VVDYLPSPLD+P +KGT PE +E + P A LAFKIM+DP+VG LTF+RVY+G
Sbjct: 276 VVDYLPSPLDIPPIKGTTPEG--EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
TL++GSYV N KG+KER+ RLL MHAN RE+V+ K+TITG+TL D
Sbjct: 334 TLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGED 393
Query: 440 HP-ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG 498
P ++LE ++ P+PVI VAIEPKTKAD +K++ L +LA+EDP+F S E QT+I G
Sbjct: 394 APRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISG 453
Query: 499 MGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 558
MGELHLEIIVDRLKREFKV+ANVG PQV YRE+I+K +V+ +Q+GG+GQ+ + ++
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIK 513
Query: 559 FEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYH 618
EP+ GSG+EF + I GG +PKEYIP V KG+EE M +G L GFPVVD++ L DGSYH
Sbjct: 514 VEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYH 573
Query: 619 DVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678
+VDSS +AF++A A +E ++K P +LEPIM+VEV TPEE++GDVIGDLN+RRGQI
Sbjct: 574 EVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQI-- 631
Query: 679 FGDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQL 733
G +P G +V+ A VPLAEMF Y + LR T+GR S++M + VP+ +Q +L
Sbjct: 632 LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/656 (56%), Positives = 474/656 (72%), Gaps = 7/656 (1%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGEVHEG ATMD+MEQE+ERGITIT+A TT +W HRINIIDTPGHVDFT+EVER
Sbjct: 37 GRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVER 96
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
++RVLDGAI +FDS GVEPQSETVWRQA+KY VPRI F NKMD+ GA+ + +
Sbjct: 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
LGA+P+V+QLP+G ED F G++D+++MKA + G +LG IP A+EY +
Sbjct: 157 LGARPVVMQLPIGREDTFSGIIDVLRMKAYTY-GNDLGTDIREIPIPEEYLDNAREYHEK 215
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
++E + D+ M YLEG EP EE + IRKGTI PV GSA KNKGVQ LLDA
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDA 275
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
VVDYLPSPLD+P +KGT PE +E + P A LAFKIM+DP+VG LTF+RVY+G
Sbjct: 276 VVDYLPSPLDIPPIKGTTPEG--EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
TL++GSYV N KG+KER+ RLL MHAN RE+V+ K+TITG+TL D
Sbjct: 334 TLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGED 393
Query: 440 HP-ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG 498
P ++LE ++ P+PVI VAIEPKTKAD +K++ L +LA+EDP+F S E QT+I G
Sbjct: 394 APRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISG 453
Query: 499 MGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 558
MGELHLEIIVDRLKREFKV+ANVG PQV YRE+I+K +V+ +Q+GG+GQ+ + ++
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIK 513
Query: 559 FEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYH 618
EP+ GSG+EF + I GG +PKEYIP V KG+EE M +G L GFPVVD++ L DGSYH
Sbjct: 514 VEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYH 573
Query: 619 DVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678
+VDSS +AF++A A +E ++K P +LEPIM+VEV TPEE++GDVIGDLN+RRGQI
Sbjct: 574 EVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQI-- 631
Query: 679 FGDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQL 733
G +P G +V+ A VPLAEMF Y + LR T+GR S++M + VP+ +Q +L
Sbjct: 632 LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/656 (56%), Positives = 473/656 (72%), Gaps = 7/656 (1%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGEVHEG ATMD+MEQE+ERGITIT+A TT +W HRINIID PGHVDFT+EVER
Sbjct: 37 GRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVER 96
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
++RVLDGAI +FDS GVEPQSETVWRQA+KY VPRI F NKMD+ GA+ + +
Sbjct: 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
LGA+P+V+QLP+G ED F G++D+++MKA + G +LG IP A+EY +
Sbjct: 157 LGARPVVMQLPIGREDTFSGIIDVLRMKAYTY-GNDLGTDIREIPIPEEYLDQAREYHEK 215
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
++E + D+ M YLEG EP EE + IRKGTI PV GSA KNKGVQ LLDA
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDA 275
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
VVDYLPSPLD+P +KGT PE +E + P A LAFKIM+DP+VG LTF+RVY+G
Sbjct: 276 VVDYLPSPLDIPPIKGTTPEG--EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
TL++GSYV N KG+KER+ RLL MHAN RE+V+ K+TITG+TL D
Sbjct: 334 TLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGED 393
Query: 440 HP-ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG 498
P ++LE ++ P+PVI VAIEPKTKAD +K++ L +LA+EDP+F S E QT+I G
Sbjct: 394 APRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISG 453
Query: 499 MGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 558
MGELHLEIIVDRLKREFKV+ANVG PQV YRE+I+K +V+ +Q+GG+GQ+ + ++
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIK 513
Query: 559 FEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYH 618
EP+ GSG+EF + I GG +PKEYIP V KG+EE M +G L GFPVVD++ L DGSYH
Sbjct: 514 VEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYH 573
Query: 619 DVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678
+VDSS +AF++A A +E ++K P +LEPIM+VEV TPEE++GDVIGDLN+RRGQI
Sbjct: 574 EVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQI-- 631
Query: 679 FGDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQL 733
G +P G +V+ A VPLAEMF Y + LR T+GR S++M + VP+ +Q +L
Sbjct: 632 LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/656 (56%), Positives = 473/656 (72%), Gaps = 7/656 (1%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGEVHEG ATMD+MEQE+ERGITIT+A TT +W HRINIIDTPGHVDFT+EVER
Sbjct: 37 GRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVER 96
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
++RVLDGAI +FDS GVEPQSETVWRQA+KY VPRI F NKMD+ GA+ + +
Sbjct: 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
LGA+P+V+QLP+G ED F G++D+++MKA + G +LG IP A+EY +
Sbjct: 157 LGARPVVMQLPIGREDTFSGIIDVLRMKAYTY-GNDLGTDIREIPIPEEYLDQAREYHEK 215
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
++E + D+ M YLEG EP EE + IRKGTI PV GSA KNKGVQ LLDA
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDA 275
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
VVDYLPSPLD+P +KGT PE +E + P A LAFKIM+DP+VG LTF+RVY+G
Sbjct: 276 VVDYLPSPLDIPPIKGTTPEG--EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
TL++GSYV N KG+KER+ RLL MHAN RE+V+ K+TITG+TL D
Sbjct: 334 TLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGED 393
Query: 440 HP-ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG 498
P ++LE ++ P+PVI VAIEPKTKAD +K++ L +LA+EDP+F S E QT+I G
Sbjct: 394 APRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISG 453
Query: 499 MGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 558
MGELHLEIIVDRLKREFKV+ANVG PQV YRE+I+K +V+ +Q+GG+GQ+ + ++
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIK 513
Query: 559 FEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYH 618
EP+ GSG+EF + I GG +PKEYIP V KG+EE M +G L GFPVVD++ L DGSY
Sbjct: 514 VEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYA 573
Query: 619 DVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678
+VDSS +AF++A A +E ++K P +LEPIM+VEV TPEE++GDVIGDLN+RRGQI
Sbjct: 574 EVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQI-- 631
Query: 679 FGDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQL 733
G +P G +V+ A VPLAEMF Y + LR T+GR S++M + VP+ +Q +L
Sbjct: 632 LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/656 (56%), Positives = 473/656 (72%), Gaps = 7/656 (1%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGEVHEG ATMD+MEQE+ERGITIT+A TT +W HRINIIDTPGHVDFT+EVER
Sbjct: 37 GRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVER 96
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
++RVLDGAI +FDS GVEPQSETVWRQA+KY VPRI F NKMD+ GA+ + +
Sbjct: 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
LGA+P+V+QLP+G ED F G++D+++MKA + G +LG IP A+EY +
Sbjct: 157 LGARPVVMQLPIGREDTFSGIIDVLRMKAYTY-GNDLGTDIREIPIPEEYLDQAREYHEK 215
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
++E + D+ M YLEG EP EE + IRKGTI PV GSA KNKGVQ LLDA
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDA 275
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
VVDYLPSPLD+P +KGT PE +E + P A LAFKIM+DP+VG LTF+RVY+G
Sbjct: 276 VVDYLPSPLDIPPIKGTTPEG--EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
TL++GSYV N KG+KER+ RLL MHAN RE+V+ K+TITG+TL D
Sbjct: 334 TLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGED 393
Query: 440 HP-ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG 498
P ++LE ++ P+PVI VAIEPKTKAD +K++ L +LA+EDP+F S E QT+I G
Sbjct: 394 APRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISG 453
Query: 499 MGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 558
MGELHLEIIVDRLKREFKV+ANVG PQV YRE+I+K +V+ +Q+GG+GQ+ + ++
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIK 513
Query: 559 FEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYH 618
EP+ GSG+EF + I GG +PKEYIP V KG+EE M +G L GFPVVD++ L DGSY
Sbjct: 514 VEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYA 573
Query: 619 DVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678
+VDSS +AF++A A +E ++K P +LEPIM+VEV TPEE++GDVIGDLN+RRGQI
Sbjct: 574 EVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQI-- 631
Query: 679 FGDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQL 733
G +P G +V+ A VPLAEMF Y + LR T+GR S++M + VP+ +Q +L
Sbjct: 632 LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/656 (56%), Positives = 472/656 (71%), Gaps = 7/656 (1%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KI EVHEG ATMD+MEQE+ERGITIT+A TT +W HRINIID PGHVDFT+EVER
Sbjct: 37 GRIHKIAEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVER 96
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
++RVLDGAI +FDS GVEPQSETVWRQA+KY VPRI F NKMD+ GA+ + +
Sbjct: 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
LGA+P+V+QLP+G ED F G++D+++MKA + G +LG IP A+EY +
Sbjct: 157 LGARPVVMQLPIGREDTFSGIIDVLRMKAYTY-GNDLGTDIREIPIPEEYLDQAREYHEK 215
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
++E + D+ M YLEG EP EE + IRKGTI PV GSA KNKGVQ LLDA
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDA 275
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
VVDYLPSPLD+P +KGT PE +E + P A LAFKIM+DP+VG LTF+RVY+G
Sbjct: 276 VVDYLPSPLDIPPIKGTTPEG--EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
TL++GSYV N KG+KER+ RLL MHAN RE+V+ K+TITG+TL D
Sbjct: 334 TLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGED 393
Query: 440 HP-ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG 498
P ++LE ++ P+PVI VAIEPKTKAD +K++ L +LA+EDP+F S E QT+I G
Sbjct: 394 APRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISG 453
Query: 499 MGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 558
MGELHLEIIVDRLKREFKV+ANVG PQV YRE+I+K +V+ +Q+GG+GQ+ + ++
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIK 513
Query: 559 FEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYH 618
EP+ GSG+EF + I GG +PKEYIP V KG+EE M +G L GFPVVD++ L DGSYH
Sbjct: 514 VEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYH 573
Query: 619 DVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678
+VDSS +AF++A A +E ++K P +LEPIM+VEV TPEE++GDVIGDLN+RRGQI
Sbjct: 574 EVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQI-- 631
Query: 679 FGDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQL 733
G +P G +V+ A VPLAEMF Y + LR T+GR S++M + VP+ +Q +L
Sbjct: 632 LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/656 (55%), Positives = 470/656 (71%), Gaps = 7/656 (1%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGEVHEG ATMD+MEQE+ERGITIT+A TT +W HRINIID PGHVDFT+EVER
Sbjct: 37 GRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVER 96
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
++RVLDGAI +FDS GVEPQSETVWRQA+KY VPRI F NKMD+ GA+ + +
Sbjct: 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
LGA+P+V+QLP+G ED F G++D+++MKA + G +LG IP A+EY +
Sbjct: 157 LGARPVVMQLPIGREDTFSGIIDVLRMKAYTY-GNDLGTDIREIPIPEEYLDQAREYHEK 215
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
++E + D+ M YLEG EP EE + IRKGTI PV GSA KNKGVQ LLDA
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDA 275
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
VVDYLPSPLD+P +KGT PE +E + P A LAFKIM+DP+VG LTF+RVY+G
Sbjct: 276 VVDYLPSPLDIPPIKGTTPEG--EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
TL++GSYV N KG+KER+ RLL MHAN RE+V+ K+TITG+TL D
Sbjct: 334 TLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGED 393
Query: 440 HP-ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG 498
P ++LE ++ P+PVI VAIEPKTKAD +K++ L +LA+E P+F S E T+I G
Sbjct: 394 APRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISG 453
Query: 499 MGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVR 558
MGEL LEIIVDRLKREFKV+ANVG PQV YRE+I+K +V+ +Q+GG+GQ+ + ++
Sbjct: 454 MGELSLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIK 513
Query: 559 FEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYH 618
EP+ GSG+EF + I GG +PKEYIP V KG+EE M +G L GFPVVD++ L DGSYH
Sbjct: 514 VEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYH 573
Query: 619 DVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678
+VDSS +AF++A A +E ++K P +LEPIM+VEV TPEE++GDVIGDLN+RRGQI
Sbjct: 574 EVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQI-- 631
Query: 679 FGDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQL 733
G +P G +V+ A VPLAEMF Y + LR T+GR S++M + VP+ +Q +L
Sbjct: 632 LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKL 687
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/660 (53%), Positives = 472/660 (71%), Gaps = 4/660 (0%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGE HEG + MDWMEQEQ+RGITITSAATT W HR+NIIDTPGHVDFT+EVER
Sbjct: 35 GRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVER 94
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
+LRVLDGA+ + D+ +GVEPQ+ETVWRQA YGVPRI FVNKMD+LGANF + +
Sbjct: 95 SLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDR 154
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
L A +QLP+GAED F+ ++DLV+MK ++ + LG + +IP + A+E R+
Sbjct: 155 LQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTND-LGTEIEEIEIPEDHLDRAEEARAS 213
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
+IE + E DE ME YL E +K+ IR+ T F PVLCG+AFKNKGVQ +LDA
Sbjct: 214 LIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDA 273
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
V+DYLPSPLD+ + G NPE + A D FA LAFK+M+DP+VG LTF RVY+G
Sbjct: 274 VIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
T+++GSYV N+ KGK+ER+GRLL+MHANSR+++ KDT TG+TLC
Sbjct: 334 TMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEK 393
Query: 440 HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGM 499
+ I+LE M+FP+PVI +++EPK+KAD DKM L+KL +EDP+FH DEE Q +I GM
Sbjct: 394 NDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGM 453
Query: 500 GELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRF 559
GELHL+I+VDR+K+EF VE NVGAP V+YRE+ ++V+ +QSGG+GQ+ D+ + F
Sbjct: 454 GELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEF 513
Query: 560 EPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD 619
P E G+G+EF++ I GG VP+EYIP V GL++ M NGVLAG+P++DV+A L DGSYHD
Sbjct: 514 TPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHD 573
Query: 620 VDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSF 679
VDSS +AF++AA A +E +K P +LEP+MKV + PEE++GD++GD+ SRRG+++
Sbjct: 574 VDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVD-- 631
Query: 680 GDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 738
G +P G +VV+A VPL+EMF Y ++LR T+GR +Y M + VP+ I + K +
Sbjct: 632 GMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/660 (53%), Positives = 472/660 (71%), Gaps = 4/660 (0%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGE HEG + MDWMEQEQ+RGITITSAATT W HR+NIIDTPGHVDFT+EVER
Sbjct: 35 GRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVER 94
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
+LRVLDGA+ + D+ +GVEPQ+ETVWRQA YGVPRI FVNKMD+LGANF + +
Sbjct: 95 SLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDR 154
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
L A +QLP+GAED F+ ++DLV+MK ++ + LG + +IP + A+E R+
Sbjct: 155 LQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTND-LGTEIEEIEIPEDHLDRAEEARAS 213
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
+IE + E DE ME YL E +K+ IR+ T F PVLCG+AFKNKGVQ +LDA
Sbjct: 214 LIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDA 273
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
V+DYLPSPLD+ + G NPE + A D FA LAFK+M+DP+VG LTF RVY+G
Sbjct: 274 VIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
T+++GSYV N+ KGK+ER+GRLL+MHANSR+++ KDT TG+TLC
Sbjct: 334 TMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEK 393
Query: 440 HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGM 499
+ I+LE M+FP+PVI +++EPK+KAD DKM L+KL +EDP+FH DEE Q +I GM
Sbjct: 394 NDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGM 453
Query: 500 GELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRF 559
GELHL+I+VDR+K+EF VE NVGAP V+YRE+ ++V+ +QSGG+GQ+ D+ + F
Sbjct: 454 GELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEF 513
Query: 560 EPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD 619
P E G+G+EF++ I GG VP+EYIP V GL++ M NGVLAG+P++DV+A L DGSYHD
Sbjct: 514 TPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHD 573
Query: 620 VDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSF 679
VDSS +AF++AA A +E +K P +LEP+MKV + PEE++GD++GD+ SRRG+++
Sbjct: 574 VDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVD-- 631
Query: 680 GDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 738
G +P G +VV+A VPL+EMF Y ++LR T+GR +Y M + VP+ I + K +
Sbjct: 632 GMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/660 (53%), Positives = 471/660 (71%), Gaps = 4/660 (0%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGE HEG + MDWMEQEQ+RGITITSAATT W HR+NIIDTPGHVD T+EVER
Sbjct: 35 GRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVER 94
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
+LRVLDGA+ + D+ +GVEPQ+ETVWRQA YGVPRI FVNKMD+LGANF + +
Sbjct: 95 SLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDR 154
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
L A +QLP+GAED F+ ++DLV+MK ++ + LG + +IP + A+E R+
Sbjct: 155 LQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTND-LGTEIEEIEIPEDHLDRAEEARAS 213
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
+IE + E DE ME YL E +K+ IR+ T F PVLCG+AFKNKGVQ +LDA
Sbjct: 214 LIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDA 273
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
V+DYLPSPLD+ + G NPE + A D FA LAFK+M+DP+VG LTF RVY+G
Sbjct: 274 VIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
T+++GSYV N+ KGK+ER+GRLL+MHANSR+++ KDT TG+TLC
Sbjct: 334 TMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEK 393
Query: 440 HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGM 499
+ I+LE M+FP+PVI +++EPK+KAD DKM L+KL +EDP+FH DEE Q +I GM
Sbjct: 394 NDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGM 453
Query: 500 GELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRF 559
GELHL+I+VDR+K+EF VE NVGAP V+YRE+ ++V+ +QSGG+GQ+ D+ + F
Sbjct: 454 GELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEF 513
Query: 560 EPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD 619
P E G+G+EF++ I GG VP+EYIP V GL++ M NGVLAG+P++DV+A L DGSYHD
Sbjct: 514 TPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHD 573
Query: 620 VDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSF 679
VDSS +AF++AA A +E +K P +LEP+MKV + PEE++GD++GD+ SRRG+++
Sbjct: 574 VDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVD-- 631
Query: 680 GDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 738
G +P G +VV+A VPL+EMF Y ++LR T+GR +Y M + VP+ I + K +
Sbjct: 632 GMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/660 (53%), Positives = 471/660 (71%), Gaps = 4/660 (0%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
GR +KIGE HEG + MDWMEQEQ+RGITITSAATT W HR+NIIDTPGHVD T+EVER
Sbjct: 35 GRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVER 94
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
+LRVLDGA+ + D+ +GVEPQ+ETVWRQA YGVPRI FVNKMD+LGANF + +
Sbjct: 95 SLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDR 154
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
L A +QLP+GAED F+ ++DLV+MK ++ + LG + +IP + A+E R+
Sbjct: 155 LQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTND-LGTEIEEIEIPEDHLDRAEEARAS 213
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
+IE + E DE ME YL E +K+ IR+ T F PVLCG+AFKNKGVQ +LDA
Sbjct: 214 LIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDA 273
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
V+DYLPSPLD+ + G NPE + A D FA LAFK+M+DP+VG LTF RVY+G
Sbjct: 274 VIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSG 333
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
T+++GSYV N+ KGK+ER+GRLL+MHANSR+++ KDT TG+TLC
Sbjct: 334 TMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEK 393
Query: 440 HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGM 499
+ I+LE M+FP+PVI +++EPK+KAD DKM L+KL +EDP+FH DEE Q +I GM
Sbjct: 394 NDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGM 453
Query: 500 GELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRF 559
GELHL+I+VDR+K+EF VE NVGAP V+YRE+ ++V+ +QSGG+GQ+ D+ + F
Sbjct: 454 GELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEF 513
Query: 560 EPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD 619
P E G+G+EF++ I GG VP+EYIP V GL++ M NGVLAG+P++DV+A L DGSYHD
Sbjct: 514 TPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHD 573
Query: 620 VDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSF 679
VDSS +AF++AA A +E +K P +LEP+MKV + PEE++GD++GD+ SRRG+++
Sbjct: 574 VDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVD-- 631
Query: 680 GDKP-GGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 738
G +P G +VV+A VPL+EMF Y ++LR T+GR +Y M + VP+ I + K +
Sbjct: 632 GMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/625 (55%), Positives = 444/625 (71%), Gaps = 7/625 (1%)
Query: 111 AATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 170
A TT +W HRINIIDTPGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+K
Sbjct: 35 AVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 94
Query: 171 YGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAII 230
Y VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA
Sbjct: 95 YKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYT 154
Query: 231 WSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 290
+ G +LG IP A+EY +++E + D+ M YLEG EP EE + I
Sbjct: 155 Y-GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 213
Query: 291 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAAS 350
RKGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE +E
Sbjct: 214 RKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG--EVVEIHPD 271
Query: 351 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRE 410
+ P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ RLL MHAN RE
Sbjct: 272 PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHRE 331
Query: 411 DVKVXXXXXXXXXXXXKDTITGETLCDADHP-ILLERMDFPDPVIKVAIEPKTKADIDKM 469
+V+ K+TITG+TL D P ++LE ++ P+PVI VAIEPKTKAD +K+
Sbjct: 332 EVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKL 391
Query: 470 ANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYR 529
+ L +LA+EDP+F S E QT+I GMGELHLEIIVDRLKREFKV+ANVG PQV YR
Sbjct: 392 SQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 451
Query: 530 ESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMK 589
E+I+K +V+ +Q+GG+GQ+ + ++ EP+ GSG+EF + I GG +PKEYIP V K
Sbjct: 452 ETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQK 511
Query: 590 GLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEP 649
G+EE M +G L GFPVVD++ L DGSY +VDSS +AF++A A +E ++K P +LEP
Sbjct: 512 GIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 571
Query: 650 IMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGM 708
IM+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR
Sbjct: 572 IMRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSK 629
Query: 709 TKGRASYIMQLAKFDVVPQHIQNQL 733
T+GR S++M + VP+ +Q +L
Sbjct: 630 TQGRGSFVMFFDHYQEVPKQVQEKL 654
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 221/659 (33%), Positives = 353/659 (53%), Gaps = 40/659 (6%)
Query: 80 GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139
G + G V EGT T D+ + + T+ + + HR+ ++D PG+ DF E+
Sbjct: 34 GAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRG 93
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199
AL D A+ + AGV+ +E W A++ G+PR+ V K+D+ G +++ + + +
Sbjct: 94 ALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK-GGDYYALLEDLRST 152
Query: 200 LGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW-SGEELGAKFAYEDIPANLQKMAQEYRS 258
LG L + LP+ + G++D+ KA + +GEE A ++P ++ Q +R
Sbjct: 153 LGPI-LPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREA-----EVPPEERERVQRFRQ 206
Query: 259 QMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLD 318
+++E IVE D+ +E YLEG E E ++K + G PV S + GV PLL+
Sbjct: 207 EVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPLLE 266
Query: 319 AVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYA 378
+++ LPSP + D P A + FK+ DPF+G + ++R+Y
Sbjct: 267 LILEALPSPTE------------------RFGDGPPLAKV-FKVQVDPFMGQVAYLRLYR 307
Query: 379 GTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDA 438
G L G L + G+ R+ L +V+ + G L
Sbjct: 308 GRLKPGD-SLQSEAGQV-RLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQG 365
Query: 439 DHP----ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQT 494
+ P + R+ PDP + VA+ PK + D ++ L KL +EDPS R EE +
Sbjct: 366 EKPESEEVPFARL--PDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGEL 423
Query: 495 VIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFAD 554
++ G GELHL +RL+ ++ VE P+V YRE+I KV+E + +KKQ+GG GQ+ D
Sbjct: 424 LLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYRETIKKVAEGQGKYKKQTGGHGQYGD 482
Query: 555 ITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVD 614
+ +R EP S Y F+ I GG +P +Y + +G++E GVLAGFPV+ +A + +
Sbjct: 483 VWLRLEP---ASEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYN 539
Query: 615 GSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRG 674
GSYH+VDSS LAFQ+AA AF++ M +A P +LEPI +++V+ P+E +GDV+ DL +RRG
Sbjct: 540 GSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRG 599
Query: 675 QINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQL 733
+I ++ G L VV A VPLAE+ +Y AL G+T G +Y ++ + + VP H+ ++
Sbjct: 600 RILGM-EQEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRI 657
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 152/647 (23%), Positives = 279/647 (43%), Gaps = 72/647 (11%)
Query: 84 KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRV 143
++G V +GT D E++RGITI + T+ W ++NIIDTPGH+DF EV R+L V
Sbjct: 31 ELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSV 90
Query: 144 LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAK 203
LDGAI L + GV+ Q+ ++ K G+P I F+NK+D+ G + I L A+
Sbjct: 91 LDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAE 150
Query: 204 PLVVQ----LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ 259
++ Q P NF S+
Sbjct: 151 IVIKQKVELYPNVCVTNFT--------------------------------------ESE 172
Query: 260 MIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319
+T++E +D+ +E Y+ G + +++ S P+ GSA N G+ L++
Sbjct: 173 QWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEV 232
Query: 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAG 379
+ + S + R S+ G FKI L ++R+Y+G
Sbjct: 233 ITNKFYS-----------------STHRGPSE---LCGNVFKIEYTKKRQRLAYIRLYSG 272
Query: 380 TLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDAD 439
L V +KE+I ++ EM+ + ++ ++ D
Sbjct: 273 VLHLRDSV---RVSEKEKI-KVTEMYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLGD 328
Query: 440 HPILLER--MDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIE 497
+L +R ++ P P+++ +EP + + + L++++ DP + D ++ ++
Sbjct: 329 TKLLPQRKKIENPHPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILS 388
Query: 498 GMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITV 557
+G++ +E+I L+ ++ VE + P V Y E K +E Y + +A I +
Sbjct: 389 FLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAE--YTIHIEVPPNPFWASIGL 446
Query: 558 RFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSY 617
P+ GSG +++S + G + + + VM+G+ G L G+ V D + G Y
Sbjct: 447 SVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLY 505
Query: 618 HDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQIN 677
+ S+ F++ A + ++KAG ++LEP + ++ P+E+L D I
Sbjct: 506 YSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIV 565
Query: 678 SFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDV 724
K + ++ +P + +Y S L T GR+ + +L + V
Sbjct: 566 DTQLKNNEV-ILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHV 611
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 202/768 (26%), Positives = 311/768 (40%), Gaps = 183/768 (23%)
Query: 96 DWMEQEQERGITITSAATTTY----------------WNKHRINIIDTPGHVDFTLEVER 139
D + EQERGITI S A + Y N IN+ID+PGHVDF+ EV
Sbjct: 58 DTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTA 117
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR-----------LGAN 188
ALRV DGA+ + D++ GV Q+ETV RQA + + +NK+DR L
Sbjct: 118 ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQT 177
Query: 189 FFRT---RDMIVTNLGAKPL--VVQLPVGAEDNF--------------------KGVVDL 223
F RT ++IV+ + L V P F K VD
Sbjct: 178 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDK 237
Query: 224 VKMKAIIWSGEELG---AKFAYEDIPANLQKMAQEYRSQMIETIVEL---------DD-- 269
KM +W K+ +D A + + + + +++ I L D+
Sbjct: 238 AKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIP 297
Query: 270 ---EAMESYLEGNEPDEE---TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDY 323
E +E L+G+E D E +K ++RK F+P LL+ +V +
Sbjct: 298 VLLEKLEIVLKGDEKDLEGKALLKVVMRK------FLP----------AADALLEMIVLH 341
Query: 324 LPSPLDLPAMKGTD----PENPEATLERAASDDEPFAGLAF---KIMSDPFVGSL-TFVR 375
LPSP+ A + P + + A + +P A L K++ G F R
Sbjct: 342 LPSPVTAQAYRAEQLYEGPADDANCI--AIKNCDPKADLMLYVSKMVPTSDKGRFYAFGR 399
Query: 376 VYAGTLSAGSYVL----NANKGKKE-----RIGRLLEMHANSREDV-KVXXXXXXXXXXX 425
V+AGT+ +G V N GKK+ I R++ M E +
Sbjct: 400 VFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGI 459
Query: 426 XKDTITGETLCDADHPILLERMDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFH 484
+ + TL ++ ++ M F PV++VA+E K D+ K+ GL +L++ DP
Sbjct: 460 DQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCV- 518
Query: 485 FSRDEEINQTVIEGMGELHLEIIVDRLKREFK-VEANVGAPQVNYRESISKVSEVKYVHK 543
+ E + ++ G GELHLEI + L+ + V + P V YRE++ S + K
Sbjct: 519 LTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSK 578
Query: 544 KQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAV-PKEYIPGVMKGLEECMSNGVLAG 602
+ + I ++ EP++ E I+ G + P++ K M++ G
Sbjct: 579 SPN----KHNRIYLKAEPIDE----EVSLAIENGIINPRDD----FKARARIMADDY--G 624
Query: 603 FPVVDVRAALV---DGS--------------YHDV-DSSVLAFQLAARGA--FREGMRK- 641
+ V D R DG+ H++ DS V AFQ A + F E MR
Sbjct: 625 WDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSV 684
Query: 642 -----------------------------------AGPKMLEPIMKVEVVTPEEHLGDVI 666
A PK+ EP+ VE+ PE+ +G +
Sbjct: 685 RVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIY 744
Query: 667 GDLNSRRGQINSFGDKPGG-LKVVDALVPLAEMFQYVSALRGMTKGRA 713
LN +RGQ+ S +PG L V A +P+ E F + LR T G+A
Sbjct: 745 SVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQA 792
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 202/768 (26%), Positives = 311/768 (40%), Gaps = 183/768 (23%)
Query: 96 DWMEQEQERGITITSAATTTY----------------WNKHRINIIDTPGHVDFTLEVER 139
D + EQERGITI S A + Y N IN+ID+PGHVDF+ EV
Sbjct: 58 DTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTA 117
Query: 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR-----------LGAN 188
ALRV DGA+ + D++ GV Q+ETV RQA + + +NK+DR L
Sbjct: 118 ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQT 177
Query: 189 FFRT---RDMIVTNLGAKPL--VVQLPVGAEDNF--------------------KGVVDL 223
F RT ++IV+ + L V P F K VD
Sbjct: 178 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDK 237
Query: 224 VKMKAIIWSGEELG---AKFAYEDIPANLQKMAQEYRSQMIETIVEL---------DD-- 269
KM +W K+ +D A + + + + +++ I L D+
Sbjct: 238 AKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIP 297
Query: 270 ---EAMESYLEGNEPDEE---TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDY 323
E +E L+G+E D E +K ++RK F+P LL+ +V +
Sbjct: 298 VLLEKLEIVLKGDEKDLEGKALLKVVMRK------FLP----------AADALLEMIVLH 341
Query: 324 LPSPLDLPAMKGTD----PENPEATLERAASDDEPFAGLAF---KIMSDPFVGSL-TFVR 375
LPSP+ A + P + + A + +P A L K++ G F R
Sbjct: 342 LPSPVTAQAYRAEQLYEGPADDANCI--AIKNCDPKADLMLYVSKMVPTSDKGRFYAFGR 399
Query: 376 VYAGTLSAGSYVL----NANKGKKE-----RIGRLLEMHANSREDV-KVXXXXXXXXXXX 425
V+AGT+ +G V N GKK+ I R++ M E +
Sbjct: 400 VFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGI 459
Query: 426 XKDTITGETLCDADHPILLERMDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFH 484
+ + TL ++ ++ M F PV++VA+E K D+ K+ GL +L++ DP
Sbjct: 460 DQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCV- 518
Query: 485 FSRDEEINQTVIEGMGELHLEIIVDRLKREFK-VEANVGAPQVNYRESISKVSEVKYVHK 543
+ E + ++ G GELHLEI + L+ + V + P V YRE++ S + K
Sbjct: 519 LTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSK 578
Query: 544 KQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAV-PKEYIPGVMKGLEECMSNGVLAG 602
+ + I ++ EP++ E I+ G + P++ K M++ G
Sbjct: 579 SPN----KHNRIYLKAEPIDE----EVSLAIENGIINPRDD----FKARARIMADDY--G 624
Query: 603 FPVVDVRAALV---DGS--------------YHDV-DSSVLAFQLAARGA--FREGMRK- 641
+ V D R DG+ H++ DS V AFQ A + F E MR
Sbjct: 625 WDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSV 684
Query: 642 -----------------------------------AGPKMLEPIMKVEVVTPEEHLGDVI 666
A PK+ EP+ VE+ PE+ +G +
Sbjct: 685 RVNILDVTLHADAIXRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIY 744
Query: 667 GDLNSRRGQINSFGDKPGG-LKVVDALVPLAEMFQYVSALRGMTKGRA 713
LN +RGQ+ S +PG L V A +P+ E F + LR T G+A
Sbjct: 745 SVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQA 792
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 185/432 (42%), Gaps = 30/432 (6%)
Query: 93 ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFD 152
AT DWM E+ERGI++T++ + +N++DTPGH DF+ + R L +D A+ + D
Sbjct: 73 ATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVID 132
Query: 153 SVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 212
+ GVE Q+ + P + FVNKMDR + I +L + + P+G
Sbjct: 133 AAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIG 192
Query: 213 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAM 272
+FKG DL+ + ++S G + I EY E + +D +
Sbjct: 193 MGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQL-RMDLALL 251
Query: 273 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPA 332
E G DEE K G PV GSA N GV+ +LD V++ P P PA
Sbjct: 252 EE--AGTPFDEERYLK--------GELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPA 301
Query: 333 MKGTDPENPEATLERAASDDEPFAGLAFKI---MSDPFVGSLTFVRVYAGTLSAGSYVLN 389
T P +E F G+ FKI M + F+R+ +GT + G + +
Sbjct: 302 --ATRVVEP---------GEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKH 350
Query: 390 ANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERM-D 448
GK + A R V+ G+T ++ + + +
Sbjct: 351 HRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPN 410
Query: 449 F-PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEII 507
F P+ +V ++ KA ++ GL +LA+E + R N ++ +G L ++I
Sbjct: 411 FAPEHFRRVRLKNPLKA--KQLQKGLEQLAEEG-AVQLFRPLVNNDYILGAVGVLQFDVI 467
Query: 508 VDRLKREFKVEA 519
V RL E+ V+A
Sbjct: 468 VARLADEYGVDA 479
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 109/438 (24%), Positives = 184/438 (42%), Gaps = 43/438 (9%)
Query: 93 ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFD 152
AT DW E E++RGI++T++ + + IN++DTPGH DFT + R L +D A+ + D
Sbjct: 55 ATSDWXELEKQRGISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVID 114
Query: 153 SVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 212
+ GVEP++ + P F+NK DR D I + L V P+G
Sbjct: 115 AAKGVEPRTIKLXEVCRLRHTPIXTFINKXDRDTRPSIELLDEIESILRIHCAPVTWPIG 174
Query: 213 AEDNFKGVVDLVKMKAIIWS---GEELGAKFAYE-----DIPANLQKMAQEYRSQMIETI 264
FKG+ L++ ++ E +G E ++ L +A E R++
Sbjct: 175 XGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNE----- 229
Query: 265 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 324
+EL A + P E R+G + G P+ GSA N GV LLDA V
Sbjct: 230 IELVKGA-------SHPFE-------REGYLKGELTPIFFGSAINNFGVGELLDAFVKEA 275
Query: 325 PSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS---LTFVRVYAGTL 381
P P+ E ++E F+G FKI ++ G + F+R+ +G
Sbjct: 276 PP-----------PQGRETNSRLVKPEEEKFSGFVFKIQANXDPGHRDRIAFLRIASGQY 324
Query: 382 SAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADHP 441
G + K+ +I L A RE+ + G+T +
Sbjct: 325 QKGXKAYHVRLKKEIQINNALTFXAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERF 384
Query: 442 ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGE 501
+F + ++ + K + GL +L++E + F R + N+ ++ +G
Sbjct: 385 KFTGIPNFASELFRL-VRLKDPLKQKALLKGLTQLSEEGATQLF-RPLDSNELILGAVGL 442
Query: 502 LHLEIIVDRLKREFKVEA 519
L +++ RL+ E+ V+
Sbjct: 443 LQFDVVAYRLENEYNVKC 460
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 192/449 (42%), Gaps = 64/449 (14%)
Query: 93 ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFD 152
A DWME E++RGI+IT++ ++ +N++DTPGH DF+ + R L +D + + D
Sbjct: 55 AKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVID 114
Query: 153 SVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 212
+ GVE ++ + P + F+NK+DR + D + L + P+G
Sbjct: 115 AAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIG 174
Query: 213 AEDNFKGVVDLVKMKAIIW-SGE-------ELGAKFAYEDIPANL-QKMAQEYRSQMIET 263
FKGV L K + ++ SG+ + D+ A + + +AQ+ R ++
Sbjct: 175 CGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDEL--- 231
Query: 264 IVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDY 323
EL A NE D+E +AG PV G+A N GV +LD +V++
Sbjct: 232 --ELVKGA------SNEFDKELF--------LAGEITPVFFGTALGNFGVDHMLDGLVEW 275
Query: 324 LPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--DP-FVGSLTFVRVYAGT 380
P+P+ + TD EA+ ++ F G FKI + DP + F+RV +G
Sbjct: 276 APAPMP----RQTDTRTVEAS-------EDKFTGFVFKIQANMDPKHRDRVAFMRVVSGK 324
Query: 381 LSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADH 440
G + K I L A R V+ G+T +
Sbjct: 325 YEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEM 384
Query: 441 ----------PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEE 490
P L R+ DP+ K K ++ GL++L++E + R
Sbjct: 385 MKFTGIPNFAPELFRRIRLKDPL-------KQK----QLLKGLVQLSEEG-AVQVFRPIS 432
Query: 491 INQTVIEGMGELHLEIIVDRLKREFKVEA 519
N ++ +G L +++V RLK E+ VEA
Sbjct: 433 NNDLIVGAVGVLQFDVVVARLKSEYNVEA 461
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 192/449 (42%), Gaps = 64/449 (14%)
Query: 93 ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFD 152
A DWME E++RGI+IT++ ++ +N++DTPGH DF+ + R L +D + + D
Sbjct: 55 AKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVID 114
Query: 153 SVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 212
+ GVE ++ + P + F+NK+DR + D + L + P+G
Sbjct: 115 AAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIG 174
Query: 213 AEDNFKGVVDLVKMKAIIW-SGE-------ELGAKFAYEDIPANL-QKMAQEYRSQMIET 263
FKGV L K + ++ SG+ + D+ A + + +AQ+ R ++
Sbjct: 175 CGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDEL--- 231
Query: 264 IVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDY 323
EL A NE D+E +AG PV G+A N GV +LD +V++
Sbjct: 232 --ELVKGA------SNEFDKELF--------LAGEITPVFFGTALGNFGVDHMLDGLVEW 275
Query: 324 LPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--DP-FVGSLTFVRVYAGT 380
P+P+ + TD EA+ ++ F G FKI + DP + F+RV +G
Sbjct: 276 APAPMP----RQTDTRTVEAS-------EDKFTGFVFKIQANMDPKHRDRVAFMRVVSGK 324
Query: 381 LSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADH 440
G + K I L A R V+ G+T +
Sbjct: 325 YEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEM 384
Query: 441 ----------PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEE 490
P L R+ DP+ K K ++ GL++L++E + R
Sbjct: 385 MKFTGIPNFAPELFRRIRLKDPL-------KQK----QLLKGLVQLSEEG-AVQVFRPIS 432
Query: 491 INQTVIEGMGELHLEIIVDRLKREFKVEA 519
N ++ +G L +++V RLK E+ VEA
Sbjct: 433 NNDLIVGAVGVLQFDVVVARLKSEYNVEA 461
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 3/68 (4%)
Query: 651 MKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVVDALVPLAEMFQYVSALRGMT 709
M+VEV TPEE++GDVIGDLN+RRGQI G +P G +V+ A VPLAEMF Y + LR T
Sbjct: 1 MRVEVTTPEEYMGDVIGDLNARRGQI--LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKT 58
Query: 710 KGRASYIM 717
+GR S++M
Sbjct: 59 QGRGSFVM 66
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 66 RSRRQFSVFAMAAEGRNY----------KIGEVHEGTATMDWMEQEQERGITITSAATTT 115
++ R F + A G++ I E + +D ++ E+ERGIT+ A
Sbjct: 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRX 63
Query: 116 YW-----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 170
++ N +++++IDTPGHVDF+ EV RAL +GA+ L D+ G+E Q+ + +A +
Sbjct: 64 FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE 123
Query: 171 YGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 204
+ I +NK+D A+ R + I LG P
Sbjct: 124 QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDP 157
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 38/240 (15%)
Query: 303 LCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 362
+ SA + G++ +L+A+V+ +P P KG DP+ +P L F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP------KG-DPQ-------------KPLKALIFDS 200
Query: 363 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXX--- 419
DP+ G++ FVR++ G + G + + GK+ + E+ A + + K
Sbjct: 201 YYDPYRGAVAFVRIFDGEVKPGDKIXLXSTGKEYEV---TEVGAQTPKXTKFDKLSAGDV 257
Query: 420 ---XXXXXXXKDTITGETLCDADHPILLERMDF--PDPVIKVAIEPKTKADIDKMANGLI 474
+D G+T+ A +P F P + I P +++ + L
Sbjct: 258 GYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPXVYAGIYPAEDTTYEELRDALE 317
Query: 475 KLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEANVGAPQVNYR 529
K A D + + + E + + G +G LH EI+ +RL+RE+ V+ AP V YR
Sbjct: 318 KYAINDAAIVY--EPESSPALGXGFRVGFLGLLHXEIVQERLEREYGVKIITTAPNVIYR 375
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 648 EPIMKVEVVTPEEHLGDVIGDLNSRRG-QINSFGDKPGGLKVVDALVPLAEMF-QYVSAL 705
EP + V ++TP+E++G +I +RG Q N P + ++ PL+E+ + +
Sbjct: 405 EPFVLVTIITPKEYVGPIIQLCQEKRGIQKNXTYLDPNTV-YLEYEXPLSEIIVDFHDKI 463
Query: 706 RGMTKGRASY 715
+ +++G ASY
Sbjct: 464 KSISRGFASY 473
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 63 LSPRSRRQFSVFAMAAEGRNY----------KIGEVHEGTATMDWMEQEQERGITITSAA 112
+ ++ R F + A G++ I E + +D ++ E+ERGIT+ A
Sbjct: 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQA 60
Query: 113 TTTYW-----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 167
++ N +++++IDTPGHVDF+ EV RAL +GA+ L D+ G+E Q+ + +
Sbjct: 61 VRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWK 120
Query: 168 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 204
A + + I +NK+D A+ R + I LG P
Sbjct: 121 AVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDP 157
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 34/238 (14%)
Query: 303 LCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 362
+ SA + G++ +L+A+V+ +P P KG DP+ +P L F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP------KG-DPQ-------------KPLKALIFDS 200
Query: 363 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXX--- 419
DP+ G++ FVR++ G + G ++ + GK+ + E+ A + + K
Sbjct: 201 YYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVT---EVGAQTPKMTKFDKLSAGDV 257
Query: 420 ---XXXXXXXKDTITGETLCDADHPILLERMDF--PDPVIKVAIEPKTKADIDKMANGLI 474
+D G+T+ A +P F P++ I P +++ + L
Sbjct: 258 GYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALE 317
Query: 475 KLAQEDPSFHFSRDEEINQTV---IEGMGELHLEIIVDRLKREFKVEANVGAPQVNYR 529
K A D + + + + + +G LH+EI+ +RL+RE+ V+ AP V YR
Sbjct: 318 KYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYR 375
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 648 EPIMKVEVVTPEEHLGDVIGDLNSRRG-QINSFGDKPGGLKVVDALVPLAEMF-QYVSAL 705
EP + V ++TP+E++G +I +RG Q N P + ++ +PL+E+ + +
Sbjct: 405 EPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTV-YLEYEMPLSEIIVDFHDKI 463
Query: 706 RGMTKGRASY 715
+ +++G ASY
Sbjct: 464 KSISRGFASY 473
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 15/130 (11%)
Query: 69 RQFSVFAMAAEGRNY---KIGEVHEGTA-------TMDWMEQEQERGITITSAATTTYWN 118
R FS+ A G++ +I ++ G + +D M+ E+ERGITI + + T +
Sbjct: 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYK 64
Query: 119 -----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV 173
+++N IDTPGHVDF+ EV R+L +GA+ + D+ GVE Q+ A + +
Sbjct: 65 ASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL 124
Query: 174 PRICFVNKMD 183
+ +NK+D
Sbjct: 125 EVVPVLNKID 134
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 15/188 (7%)
Query: 365 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXX 424
D ++G ++ +R+ GTL G V + G+ RL + ++
Sbjct: 201 DNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVC 260
Query: 425 XXKDTI---TGETLCDADHPI--LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQE 479
KD G+TL A +P L P + + P + D + + L KL+
Sbjct: 261 AIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLN 320
Query: 480 DPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEANVGAPQVNYR-ESIS 533
D S + + E + + G +G LH+EII +RL+RE+ ++ AP V Y E+ S
Sbjct: 321 DASLFY--EPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTS 378
Query: 534 KVSEVKYV 541
+ EV YV
Sbjct: 379 R--EVIYV 384
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 15/130 (11%)
Query: 69 RQFSVFAMAAEGRNY---KIGEVHEGTA-------TMDWMEQEQERGITITSAATTTYWN 118
R FS+ A G++ +I ++ G + +D M+ E+ERGITI + + T +
Sbjct: 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYK 64
Query: 119 -----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV 173
+++N IDTPGHVDF+ EV R+L +GA+ + D+ GVE Q+ A + +
Sbjct: 65 ASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL 124
Query: 174 PRICFVNKMD 183
+ +NK+D
Sbjct: 125 EVVPVLNKID 134
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 15/188 (7%)
Query: 365 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXX 424
D ++G ++ +R+ GTL G V + G+ RL + ++
Sbjct: 201 DNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVC 260
Query: 425 XXKDTI---TGETLCDADHPI--LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQE 479
KD G+TL A +P L P + + P + D + + L KL+
Sbjct: 261 AIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLN 320
Query: 480 DPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEANVGAPQVNYR-ESIS 533
D S + + E + + G +G LH+EII +RL+RE+ ++ AP V Y E+ S
Sbjct: 321 DASLFY--EPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTS 378
Query: 534 KVSEVKYV 541
+ EV YV
Sbjct: 379 R--EVIYV 384
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 92 TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLF 151
T+ D + + Q+RGITI + +RI ++D PGH D V A ++D A+ +
Sbjct: 45 TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVV 104
Query: 152 DSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNL 200
D+ G + Q+ D + +P I + K D G + +MI+ ++
Sbjct: 105 DAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSI 153
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
F AAE N ++ + +D +E+ RGITI +A K + +D PGH D+
Sbjct: 33 FVTAAENPNVEVKDY----GDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G PQ+ A + GVP I F+NK+D
Sbjct: 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
F AAE N ++ + + +D +E+ RGITI +A K + +D PGH D+
Sbjct: 33 FVTAAENPNVEVKDYGD----IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G PQ+ A + GVP I F+NK+D
Sbjct: 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 10/145 (6%)
Query: 101 EQERG-ITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP 159
EQE G IT A N +I +DTPGH FT R +V D I + + GV P
Sbjct: 35 EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMP 94
Query: 160 QSETVWRQADKYGVPRICFVNKMDRLGANFFRT-RDMIVTNL-----GAKPLVVQLPVGA 213
Q+ A VP I +NKMD+ AN R ++++ NL G + +L
Sbjct: 95 QTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKT 154
Query: 214 EDNFKGVVDLVKMKAIIWSGEELGA 238
++ G+ L++M ++ EEL A
Sbjct: 155 KE---GLDHLLEMILLVSEMEELKA 176
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
+ AAE N ++ + + +D +E+ RGITI +A K + +D PGH D+
Sbjct: 33 YVTAAENPNVEVKDYGD----IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G PQ+ A + GVP I F+NK+D
Sbjct: 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
+ AAE N ++ + + +D +E+ RGITI +A K + +D PGH D+
Sbjct: 33 YVTAAENPNVEVKDYGD----IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G PQ+ A + GVP I F+NK+D
Sbjct: 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
+ AAE N ++ + + +D +E+ RGITI +A K + +D PGH D+
Sbjct: 33 YVAAAENPNVEVKDYGD----IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G PQ+ A + GVP I F+NK+D
Sbjct: 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
+ AAE N ++ + + +D +E+ RGITI +A K + +D PGH D+
Sbjct: 33 YVAAAENPNVEVKDYGD----IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G PQ+ A + GVP I F+NK+D
Sbjct: 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
+ AAE N ++ + + +D +E+ RGITI +A K + +D PGH D+
Sbjct: 34 YVAAAENPNVEVKDYGD----IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 89
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G PQ+ A + GVP I F+NK+D
Sbjct: 90 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 140
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
+ AAE N ++ + + +D +E+ RGITI +A K + +D PGH D+
Sbjct: 33 YVAAAENPNVEVKDYGD----IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G PQ+ A + GVP I F+NK+D
Sbjct: 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
+ AAE N ++ + +D +E+ RGITI +A K + +D PGH D+
Sbjct: 33 YVAAAENPNVEVKDY----GDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G PQ+ A + GVP I F+NK+D
Sbjct: 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
+ AAE N ++ + +D +E+ RGITI +A K + +D PGH D+
Sbjct: 33 YVAAAENPNVEVKDY----GDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G PQ+ A + GVP I F+NK+D
Sbjct: 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICL---- 150
+D M++E+ERGITI K+ IID PGH DF + D AI +
Sbjct: 62 LDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSAR 121
Query: 151 ---FDSVAGVEPQSETVWRQADKYGVPRICF-VNKMDRLGANFFRTRDMIVTNLGAK 203
F++ E Q+ A G+ +I VNKMD N+ + R V ++ K
Sbjct: 122 KGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKK 178
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICL---- 150
+D M++E+ERGITI K+ IID PGH DF + D AI +
Sbjct: 59 LDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSAR 118
Query: 151 ---FDSVAGVEPQSETVWRQADKYGVPRICF-VNKMDRLGANFFRTRDMIVTNLGAK 203
F++ E Q+ A G+ +I VNKMD N+ + R V ++ K
Sbjct: 119 KGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKK 175
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 154
+D ++ E+E+GITI A K + I DTPGH +T D AI L D+
Sbjct: 79 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDAR 138
Query: 155 AGVEPQSETVWRQADKYGVPRICF-VNKMDRLG 186
GV+ Q+ A G+ I +NK D G
Sbjct: 139 YGVQTQTRRHSYIASLLGIKHIVVAINKXDLNG 171
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRIN--IIDTPGHVDFT-------LEVERALRVLD 145
MD +E+ERG+T+ + T++++ HR N I+D PGH DF + + A+ +D
Sbjct: 86 MDQTNEERERGVTV--SICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVD 143
Query: 146 GAICLFDSVAGVEPQSETVWRQADKYGVPRICF-VNKMDRL 185
+ F+S ++ Q++ A G+ + +NKMD +
Sbjct: 144 CSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 154
+D +E+ RGITI ++ +D PGH D+ + +DGAI + +
Sbjct: 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 393
Query: 155 AGVEPQSETVWRQADKYGVPR-ICFVNKMD 183
G PQ+ + GVP I F+NK D
Sbjct: 394 DGPMPQTREHILLGRQVGVPYIIVFLNKCD 423
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEVERALRVLDGA 147
+D ++ E+ERGITI A K+++ +ID PGH DF T + + A+ ++ G
Sbjct: 60 LDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGG 119
Query: 148 ICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMI 196
+ F++ + Q+ A GV + I VNKMD + + R ++++
Sbjct: 120 VGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIV 169
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRIN--IIDTPGHVDFT-------LEVERALRVLD 145
MD +E+ERG+T++ T++++ HR N I+D PGH DF + + A+ +D
Sbjct: 220 MDQTNEERERGVTVS--ICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVD 277
Query: 146 GAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 185
+ F+S ++ Q++ A G+ I +NKMD +
Sbjct: 278 CSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 154
+D +E+ RGITI ++ +D PGH D+ + +DGAI + +
Sbjct: 41 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 100
Query: 155 AGVEPQSETVWRQADKYGVPR-ICFVNKMD 183
G PQ+ + GVP I F+NK D
Sbjct: 101 DGPMPQTREHILLGRQVGVPYIIVFLNKCD 130
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 154
+D +E+ RGITI ++ +D PGH D+ + +DGAI + +
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 155 AGVEPQSETVWRQADKYGVPR-ICFVNKMD 183
G PQ+ + GVP I F+NK D
Sbjct: 109 DGPMPQTREHILLGRQVGVPYIIVFLNKCD 138
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 154
+D +E+ RGITI ++ +D PGH D+ + +DGAI + +
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 155 AGVEPQSETVWRQADKYGVPR-ICFVNKMD 183
G PQ+ + GVP I F+NK D
Sbjct: 109 DGPMPQTREHILLGRQVGVPYIIVFLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 154
+D +E+ RGITI ++ +D PGH D+ + +DGAI + +
Sbjct: 50 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Query: 155 AGVEPQSETVWRQADKYGVPR-ICFVNKMD 183
G PQ+ + GVP I F+NK D
Sbjct: 110 DGPMPQTREHILLGRQVGVPYIIVFLNKCD 139
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 154
+D +E+ RGITI ++ +D PGH D+ + +DGAI + +
Sbjct: 50 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Query: 155 AGVEPQSETVWRQADKYGVPR-ICFVNKMD 183
G PQ+ + GVP I F+NK D
Sbjct: 110 DGPMPQTREHILLGRQVGVPYIIVFLNKCD 139
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 154
+D +E+ RGITI ++ +D PGH D+ + +DGAI + +
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 155 AGVEPQSETVWRQADKYGVPR-ICFVNKMD 183
G PQ+ + GVP I F+NK D
Sbjct: 109 DGPMPQTREHILLGRQVGVPYIIVFLNKCD 138
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 154
+D +E+ RGITI ++ +D PGH D+ + +DGAI + +
Sbjct: 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 393
Query: 155 AGVEPQSETVWRQADKYGVPR-ICFVNKMD 183
G PQ+ + GVP I F+NK D
Sbjct: 394 DGPMPQTREHILLGRQVGVPYIIVFLNKCD 423
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 78 AEGRNYKIGEVHEGTA-TMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 136
AE K+G+ E A +D +++E+ERG+TI K+ IID PGH DF
Sbjct: 41 AEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKN 100
Query: 137 VERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMD 183
+ D AI + + G VE Q+ A G+ + I VNKMD
Sbjct: 101 MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD 155
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133
+ AAE RN ++ + +D +E+ RGITI +A K + +D GH D+
Sbjct: 33 YVAAAENRNVEVKDY----GDIDKAREERARGITINTAHVEYETAKRHYSHVDCRGHADY 88
Query: 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 183
+ +DGAI + + G Q+ A + GV I F+NK+D
Sbjct: 89 IKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYIVVFMNKVD 139
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 125 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 184
IDTPGH FT +R + D AI + D G +PQ++ Y P + NK+DR
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPFVVAANKIDR 134
Query: 185 L 185
+
Sbjct: 135 I 135
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 125 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 184
IDTPGH FT +R + D AI + D G +PQ++ Y P + NK+DR
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDR 134
Query: 185 L 185
+
Sbjct: 135 I 135
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 72 SVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 131
++ + AEG K + E +D +E+ RGITI +A D PGH
Sbjct: 33 AITKILAEGGGAKFKKYEE----IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 88
Query: 132 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMD 183
D+ LDG I + + G PQ+ A + GV + +VNK D
Sbjct: 89 DYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGVEHVVVYVNKAD 141
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 72 SVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 131
++ + AEG K + E +D +E+ RGITI +A D PGH
Sbjct: 22 AITKILAEGGGAKFKKYEE----IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77
Query: 132 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMD 183
D+ + LDG I + + G PQ+ A + GV + +VNK D
Sbjct: 78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKAD 130
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 104 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET 163
RGITI ++ +D PGH D+ + +DGAI + + G PQ+
Sbjct: 44 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 103
Query: 164 VWRQADKYGVPR-ICFVNKMD 183
+ GVP I F+NK D
Sbjct: 104 HILLGRQVGVPYIIVFLNKCD 124
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 96 DWMEQEQERGITITSAATTTYWNKHRIN--IIDTPGHVDFTLEVERALRVLDGAICLFD 152
D +E+ERG+T+ + T++++ HR N I+D PGH DF + D AI D
Sbjct: 87 DQTNEERERGVTV--SICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVD 143
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 105 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV 164
GITI ++ +D PGH D+ + +DGAI + + G PQ+
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 165 WRQADKYGVPR-ICFVNKMD 183
+ GVP I F+NK D
Sbjct: 61 ILLGRQVGVPYIIVFLNKCD 80
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 105 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV 164
GITI ++ +D PGH D+ + +DGAI + + G PQ+
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 165 WRQADKYGVPR-ICFVNKMD 183
+ GVP I F+NK D
Sbjct: 61 ILLGRQVGVPYIIVFLNKCD 80
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 121 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVN 180
+I +DTPGH F+ R +V D I + + GV Q+ + A VP + +N
Sbjct: 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAIN 112
Query: 181 KMDRLGAN 188
K D+ A+
Sbjct: 113 KCDKAEAD 120
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 95 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDS 153
+D E+E+ RG+T+ A+TT +K I D PGH DF + D A+ + DS
Sbjct: 230 LDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDS 288
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT GH +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 71 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 130
Query: 177 CFVNKMD 183
NK D
Sbjct: 131 LVGNKCD 137
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT GH +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2BCW|C Chain C, Coordinates Of The N-Terminal Domain Of Ribosomal Protein
L11,C-Terminal Domain Of Ribosomal Protein L7L12 AND A
Portion Of The G' Domain Of Elongation Factor G, As
Fitted Into Cryo-Em Map Of An Escherichia Coli 70sEf-
GGdpFusidic Acid Complex
Length = 58
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 245 IPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVP 301
IP A+EY +++E + D+ M YLEG EP EE + IRKGTI P
Sbjct: 2 IPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITP 58
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S A + E + R D VP +
Sbjct: 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 177 CFVNKMD 183
NK D
Sbjct: 131 LVGNKCD 137
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLG 186
NK D G
Sbjct: 113 LVGNKCDLAG 122
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 636 REGMRKAGPKMLEPIMKVEVVT----PEEHLGDVIGDLNSRRGQINS 678
REG+ P ++ PI ++E + P ++GDV+G +SR+ NS
Sbjct: 206 REGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNS 252
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 60 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 177 CFVNKMD 183
NK D
Sbjct: 120 LVGNKCD 126
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 59 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 119 LVGNKCD-LAARTVESR 134
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 118 LVGNKCD-LAARTVESR 133
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 118 LVGNKCD-LAARTVESR 133
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 102/256 (39%), Gaps = 46/256 (17%)
Query: 105 GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV 164
GIT A I +DTPGH FT R + D + + + GV PQ+
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA 95
Query: 165 WRQADKYGVPRICFVNKMDRLGANFFRTRD------MIVTNLGAKPLVVQLPVGAEDNFK 218
+ A VP + VNK+D+ A+ R ++ ++ G + V + A
Sbjct: 96 IQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155
Query: 219 GVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEG 278
++D + ++A + ++ A + MA +ES+L+
Sbjct: 156 ELLDAILLQAEVL------------ELKAVRKGMAS--------------GAVIESFLDK 189
Query: 279 NEPDEETIKKLIRKGTIAGSFVPVLCG------SAFKNKGVQPLLDAVVDYLPS-PLDLP 331
T+ L+R+GT+ + VLCG A +N+ Q +L+A PS P+++
Sbjct: 190 GRGPVATV--LVREGTLHKGDI-VLCGFEYGRVRAMRNELGQEVLEAG----PSIPVEIL 242
Query: 332 AMKGTDPENPEATLER 347
+ G E T+ R
Sbjct: 243 GLSGVPAAGDEVTVVR 258
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 177 CFVNKMD 183
NK D
Sbjct: 114 LVGNKSD 120
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 177 CFVNKMD 183
NK D
Sbjct: 114 LVGNKSD 120
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 121 RINIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPR 175
+I+I+DT G D+ + R +G +C+F +S A E + R + VP
Sbjct: 67 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 126
Query: 176 ICFVNKMD 183
+ NK D
Sbjct: 127 LLVGNKSD 134
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 121 RINIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPR 175
+I+I+DT G D+ + R +G +C+F +S A E + R + VP
Sbjct: 55 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 114
Query: 176 ICFVNKMD 183
+ NK D
Sbjct: 115 LLVGNKSD 122
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 177 CFVNKMD 183
NK D
Sbjct: 114 LVGNKSD 120
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKSD-LAARTVESR 128
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMD 183
NK D
Sbjct: 113 LVGNKCD 119
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 121 RINIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPR 175
+I+I+DT G D+ + R +G +C+F +S A E + R + VP
Sbjct: 53 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 112
Query: 176 ICFVNKMD 183
+ NK D
Sbjct: 113 LLVGNKSD 120
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 121 RINIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPR 175
+I+I+DT G D+ + R +G +C+F +S A E + R + VP
Sbjct: 63 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 122
Query: 176 ICFVNKMD 183
+ NK D
Sbjct: 123 LLVGNKSD 130
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 177 CFVNKMD 183
NK D
Sbjct: 114 LVGNKCD 120
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKSD-LAARTVESR 128
>pdb|2ZYK|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|B Chain B, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|C Chain C, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|D Chain D, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYM|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Alpha-Cyclodextrin
pdb|2ZYN|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Beta-Cyclodextrin
pdb|2ZYO|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Maltotetraose
Length = 397
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 210 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDD 269
P+ +++ K D V MKA+ + G+ G +P ++ +A Y +++ + D
Sbjct: 96 PIQVDNSVKNQFDDVAMKALTYGGKLYG-------LPKAIESVALIYNKKLMGQVPATYD 148
Query: 270 EAMESYLEGNEPDEE 284
E + N+PDE+
Sbjct: 149 ELFQYAKANNKPDEQ 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ + +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
N+ D L A +R
Sbjct: 113 LVGNRCD-LAARTVESR 128
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 58 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 118 LVGNKCD-LAARTVESR 133
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 280 EPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 327
E + E IK+ + KGTIA + P++ SA + LL A+ D++P+P
Sbjct: 154 EENYEQIKEFV-KGTIAEN-APIIPISAHHEANIDVLLKAIQDFIPTP 199
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 122 INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI 176
++I+DT G +++ ++ +R +G +C+F S + E + R D VP +
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 177 CFVNKMDRLGANFFRTR 193
NK D L A +R
Sbjct: 113 LVGNKCD-LAARTVESR 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,046,426
Number of Sequences: 62578
Number of extensions: 899576
Number of successful extensions: 2375
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2186
Number of HSP's gapped (non-prelim): 149
length of query: 742
length of database: 14,973,337
effective HSP length: 106
effective length of query: 636
effective length of database: 8,340,069
effective search space: 5304283884
effective search space used: 5304283884
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)