Query 004615
Match_columns 742
No_of_seqs 395 out of 2581
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:16:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465 Mitochondrial elongati 100.0 2E-159 4E-164 1279.8 55.1 667 66-736 37-720 (721)
2 COG0480 FusA Translation elong 100.0 1E-153 2E-158 1315.4 74.7 674 65-741 7-695 (697)
3 PRK00007 elongation factor G; 100.0 4E-137 8E-142 1209.1 77.3 673 65-738 7-692 (693)
4 PRK12739 elongation factor G; 100.0 5E-136 1E-140 1200.3 75.9 672 65-738 5-689 (691)
5 TIGR00484 EF-G translation elo 100.0 4E-134 1E-138 1184.8 78.2 669 65-737 7-688 (689)
6 PRK13351 elongation factor G; 100.0 1E-130 2E-135 1159.1 78.7 668 66-735 6-686 (687)
7 PRK12740 elongation factor G; 100.0 3E-123 6E-128 1094.5 75.6 654 74-734 1-667 (668)
8 PLN00116 translation elongatio 100.0 2E-121 4E-126 1092.6 57.1 652 65-731 16-811 (843)
9 PTZ00416 elongation factor 2; 100.0 1E-119 2E-124 1075.2 60.8 648 65-731 16-804 (836)
10 TIGR00490 aEF-2 translation el 100.0 7E-117 1E-121 1040.4 58.0 623 65-741 16-715 (720)
11 KOG0464 Elongation factor G [T 100.0 6E-119 1E-123 923.1 31.9 659 65-737 34-749 (753)
12 PRK07560 elongation factor EF- 100.0 3E-116 6E-121 1037.9 55.7 621 65-741 17-717 (731)
13 KOG0469 Elongation factor 2 [T 100.0 2E-107 4E-112 853.9 27.6 653 65-739 16-824 (842)
14 TIGR01394 TypA_BipA GTP-bindin 100.0 5.8E-87 1.2E-91 764.0 46.4 444 68-731 1-477 (594)
15 PRK10218 GTP-binding protein; 100.0 7.8E-85 1.7E-89 744.7 48.7 444 66-729 3-480 (607)
16 PRK05433 GTP-binding protein L 100.0 8.7E-85 1.9E-89 748.8 48.7 450 66-725 5-481 (600)
17 TIGR01393 lepA GTP-binding pro 100.0 1.7E-83 3.7E-88 737.5 49.9 450 67-725 2-478 (595)
18 KOG0468 U5 snRNP-specific prot 100.0 1.2E-84 2.7E-89 701.2 35.8 644 64-735 124-916 (971)
19 KOG0467 Translation elongation 100.0 8.1E-84 1.7E-88 708.1 27.9 645 65-729 6-832 (887)
20 PRK00741 prfC peptide chain re 100.0 2E-81 4.4E-86 709.8 47.5 434 66-533 8-472 (526)
21 TIGR00503 prfC peptide chain r 100.0 3.2E-77 7E-82 675.7 46.4 432 66-530 9-470 (527)
22 KOG0462 Elongation factor-type 100.0 3.8E-77 8.2E-82 637.0 37.5 454 66-725 58-534 (650)
23 COG1217 TypA Predicted membran 100.0 2E-76 4.3E-81 619.7 40.7 445 66-730 3-480 (603)
24 COG0481 LepA Membrane GTPase L 100.0 2.2E-76 4.7E-81 621.3 37.6 452 66-726 7-485 (603)
25 COG4108 PrfC Peptide chain rel 100.0 2.1E-65 4.6E-70 534.8 32.8 428 66-528 10-469 (528)
26 cd01886 EF-G Elongation factor 100.0 5.9E-53 1.3E-57 441.8 29.4 257 70-327 1-270 (270)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 4.3E-48 9.3E-53 404.8 27.4 250 67-327 1-267 (267)
28 cd04170 EF-G_bact Elongation f 100.0 1.7E-45 3.7E-50 387.7 29.1 255 70-327 1-268 (268)
29 cd04168 TetM_like Tet(M)-like 100.0 7.2E-45 1.6E-49 374.4 24.9 224 70-327 1-237 (237)
30 PRK12736 elongation factor Tu; 100.0 4.4E-38 9.5E-43 348.0 27.1 262 66-439 10-297 (394)
31 CHL00071 tufA elongation facto 100.0 2.2E-37 4.9E-42 343.9 27.4 262 66-439 10-307 (409)
32 TIGR00485 EF-Tu translation el 100.0 1.1E-36 2.4E-41 337.3 27.8 262 66-439 10-297 (394)
33 PTZ00141 elongation factor 1- 100.0 1E-36 2.3E-41 340.4 27.2 258 67-439 6-318 (446)
34 PRK05306 infB translation init 100.0 1.8E-36 4E-41 353.7 29.9 312 66-504 288-629 (787)
35 PLN00043 elongation factor 1-a 100.0 1.5E-36 3.2E-41 339.0 26.2 258 67-439 6-318 (447)
36 PRK00049 elongation factor Tu; 100.0 2.6E-36 5.7E-41 333.7 27.0 260 66-439 10-299 (396)
37 PRK12735 elongation factor Tu; 100.0 4.4E-36 9.5E-41 332.2 27.2 262 66-439 10-299 (396)
38 PLN03126 Elongation factor Tu; 100.0 8.6E-36 1.9E-40 333.9 29.3 261 65-439 78-376 (478)
39 COG5256 TEF1 Translation elong 100.0 8.4E-36 1.8E-40 314.0 26.8 259 67-443 6-320 (428)
40 PLN03127 Elongation factor Tu; 100.0 1.3E-35 2.8E-40 331.0 28.9 262 66-439 59-350 (447)
41 KOG0460 Mitochondrial translat 100.0 1.9E-35 4.1E-40 300.5 15.7 261 68-441 54-343 (449)
42 TIGR02034 CysN sulfate adenyly 100.0 2.9E-34 6.3E-39 318.5 26.4 257 70-440 2-301 (406)
43 TIGR00487 IF-2 translation ini 100.0 1.1E-33 2.4E-38 323.9 31.1 312 66-504 85-427 (587)
44 PRK12317 elongation factor 1-a 100.0 3.5E-34 7.7E-39 320.9 26.2 260 66-440 4-311 (425)
45 PTZ00327 eukaryotic translatio 100.0 3.1E-34 6.6E-39 319.1 25.2 259 64-440 30-352 (460)
46 COG0050 TufB GTPases - transla 100.0 4.4E-34 9.5E-39 285.6 20.1 261 68-440 12-298 (394)
47 PRK05124 cysN sulfate adenylyl 100.0 2.5E-33 5.5E-38 315.5 27.1 263 66-441 25-330 (474)
48 TIGR00483 EF-1_alpha translati 100.0 8.6E-33 1.9E-37 309.6 26.3 260 66-440 5-313 (426)
49 CHL00189 infB translation init 100.0 7.5E-32 1.6E-36 312.3 26.5 312 66-504 242-584 (742)
50 PRK10512 selenocysteinyl-tRNA- 100.0 9.5E-32 2.1E-36 310.3 24.5 251 70-439 2-260 (614)
51 PRK04000 translation initiatio 100.0 2.4E-31 5.3E-36 295.1 26.6 258 67-442 8-321 (411)
52 TIGR03680 eif2g_arch translati 100.0 6.4E-31 1.4E-35 292.0 27.1 257 66-440 2-314 (406)
53 PRK05506 bifunctional sulfate 100.0 1.2E-30 2.6E-35 305.3 26.7 260 68-441 24-326 (632)
54 PF00009 GTP_EFTU: Elongation 100.0 1.7E-31 3.7E-36 266.4 11.8 132 67-198 2-148 (188)
55 TIGR00475 selB selenocysteine- 100.0 1.9E-29 4E-34 290.6 25.0 253 70-438 2-260 (581)
56 COG3276 SelB Selenocysteine-sp 100.0 3E-29 6.6E-34 266.4 21.8 250 70-439 2-256 (447)
57 cd01885 EF2 EF2 (for archaea a 100.0 1.2E-29 2.5E-34 258.0 16.0 119 69-187 1-140 (222)
58 COG0532 InfB Translation initi 100.0 6.1E-28 1.3E-32 263.1 26.7 252 67-437 4-260 (509)
59 KOG0458 Elongation factor 1 al 100.0 4.7E-28 1E-32 263.7 24.7 260 64-437 173-488 (603)
60 cd01884 EF_Tu EF-Tu subfamily. 100.0 9.5E-29 2.1E-33 247.1 16.2 117 69-185 3-131 (195)
61 KOG1145 Mitochondrial translat 100.0 1.5E-27 3.2E-32 256.3 23.8 298 65-480 150-498 (683)
62 COG2895 CysN GTPases - Sulfate 100.0 2.4E-27 5.1E-32 243.4 21.6 283 66-465 4-331 (431)
63 COG5257 GCD11 Translation init 100.0 1.3E-26 2.8E-31 235.1 24.2 309 66-502 8-363 (415)
64 PRK04004 translation initiatio 99.9 5.3E-26 1.2E-30 261.3 25.1 287 67-436 5-326 (586)
65 COG5258 GTPBP1 GTPase [General 99.9 5.9E-25 1.3E-29 227.3 28.1 280 66-441 115-439 (527)
66 PF03764 EFG_IV: Elongation fa 99.9 4.1E-26 8.9E-31 210.5 13.8 119 524-643 1-120 (120)
67 cd01684 Tet_like_IV EF-G_domai 99.9 8.7E-26 1.9E-30 206.0 14.4 115 526-643 1-115 (115)
68 TIGR00491 aIF-2 translation in 99.9 9.5E-24 2.1E-28 241.7 29.5 288 67-436 3-324 (590)
69 cd01883 EF1_alpha Eukaryotic e 99.9 2.1E-24 4.5E-29 220.5 15.0 118 70-187 1-152 (219)
70 KOG0461 Selenocysteine-specifi 99.9 4.5E-24 9.7E-29 217.6 14.9 246 68-424 7-268 (522)
71 KOG0459 Polypeptide release fa 99.9 8.1E-24 1.8E-28 220.4 16.6 273 65-443 76-394 (501)
72 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.9 4.5E-24 9.7E-29 195.5 12.9 116 528-643 1-116 (116)
73 cd04166 CysN_ATPS CysN_ATPS su 99.9 8.3E-24 1.8E-28 214.4 13.6 118 70-187 1-145 (208)
74 cd01890 LepA LepA subfamily. 99.9 5.6E-23 1.2E-27 202.7 16.9 128 69-196 1-143 (179)
75 cd01680 EFG_like_IV Elongation 99.9 2.3E-23 5E-28 191.0 13.1 116 528-643 1-116 (116)
76 cd01888 eIF2_gamma eIF2-gamma 99.9 1.5E-23 3.3E-28 211.6 12.8 116 69-186 1-151 (203)
77 cd04167 Snu114p Snu114p subfam 99.9 4.2E-23 9.1E-28 210.1 15.0 117 69-185 1-136 (213)
78 PRK14845 translation initiatio 99.9 8.1E-22 1.8E-26 235.4 27.4 304 99-476 487-832 (1049)
79 cd01693 mtEFG2_like_IV mtEF-G2 99.9 4.2E-23 9E-28 190.4 11.7 116 526-643 1-120 (120)
80 cd01891 TypA_BipA TypA (tyrosi 99.9 1.7E-22 3.8E-27 202.4 16.2 133 67-199 1-144 (194)
81 cd01889 SelB_euk SelB subfamil 99.9 3.4E-22 7.3E-27 200.0 15.5 117 70-186 2-134 (192)
82 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.7E-22 3.8E-27 206.3 12.5 132 70-201 1-168 (224)
83 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 1.5E-22 3.2E-27 172.2 7.8 79 648-726 1-80 (80)
84 PF00679 EFG_C: Elongation fac 99.9 5.9E-22 1.3E-26 172.4 8.8 89 645-733 1-89 (89)
85 smart00838 EFG_C Elongation fa 99.9 6.1E-22 1.3E-26 170.9 7.2 83 646-729 1-83 (85)
86 cd01683 EF2_IV_snRNP EF-2_doma 99.8 4.6E-21 1E-25 187.6 12.4 127 523-653 1-178 (178)
87 PF14492 EFG_II: Elongation Fa 99.8 8.9E-21 1.9E-25 158.9 9.0 75 449-523 1-75 (75)
88 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 7.8E-21 1.7E-25 161.2 7.9 78 648-726 1-78 (78)
89 cd03711 Tet_C Tet_C: C-terminu 99.8 1.7E-20 3.7E-25 159.1 8.1 78 648-726 1-78 (78)
90 cd03710 BipA_TypA_C BipA_TypA_ 99.8 3.4E-20 7.3E-25 157.6 8.8 78 648-725 1-78 (79)
91 KOG0466 Translation initiation 99.8 5.2E-20 1.1E-24 185.4 11.0 269 38-423 10-336 (466)
92 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 2.8E-20 6.2E-25 157.9 7.6 78 648-726 1-78 (78)
93 cd04096 eEF2_snRNP_like_C eEF2 99.8 3.1E-20 6.6E-25 158.4 7.3 79 648-726 1-80 (80)
94 cd01681 aeEF2_snRNP_like_IV Th 99.8 1.7E-19 3.8E-24 177.6 12.7 86 567-652 86-177 (177)
95 cd00881 GTP_translation_factor 99.8 9.1E-19 2E-23 173.5 16.6 132 70-201 1-144 (189)
96 cd03709 lepA_C lepA_C: This fa 99.8 1.1E-19 2.3E-24 154.7 8.4 78 648-725 1-79 (80)
97 cd01514 Elongation_Factor_C El 99.8 2E-19 4.3E-24 153.1 7.8 79 648-726 1-79 (79)
98 KOG1144 Translation initiation 99.8 9.8E-19 2.1E-23 193.2 13.3 277 67-435 474-791 (1064)
99 cd04171 SelB SelB subfamily. 99.8 3.8E-18 8.3E-23 165.1 13.9 115 70-186 2-118 (164)
100 cd03690 Tet_II Tet_II: This su 99.8 2.9E-18 6.4E-23 147.7 11.1 84 353-437 2-85 (85)
101 cd04092 mtEFG2_II_like mtEFG2_ 99.7 1E-17 2.2E-22 143.9 10.7 83 355-437 1-83 (83)
102 PRK09554 feoB ferrous iron tra 99.7 1.2E-17 2.5E-22 197.4 13.5 239 68-324 3-263 (772)
103 KOG1143 Predicted translation 99.7 2E-16 4.3E-21 163.5 18.7 279 69-438 168-490 (591)
104 cd03689 RF3_II RF3_II: this su 99.7 3.7E-17 8.1E-22 140.7 10.5 81 357-437 1-84 (85)
105 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 1.4E-16 3E-21 155.0 14.9 115 69-188 1-118 (168)
106 cd04088 EFG_mtEFG_II EFG_mtEFG 99.7 5.3E-17 1.1E-21 139.6 10.5 83 355-437 1-83 (83)
107 COG1160 Predicted GTPases [Gen 99.7 1.3E-16 2.8E-21 172.2 15.9 111 69-185 4-125 (444)
108 KOG0463 GTP-binding protein GP 99.7 2.1E-16 4.6E-21 163.2 16.2 277 69-441 134-458 (641)
109 cd04091 mtEFG1_II_like mtEFG1_ 99.7 9.8E-17 2.1E-21 137.1 10.6 81 355-437 1-81 (81)
110 COG1160 Predicted GTPases [Gen 99.7 9.6E-16 2.1E-20 165.5 14.2 116 67-187 177-304 (444)
111 PRK00093 GTP-binding protein D 99.7 1.3E-15 2.8E-20 171.8 15.9 115 67-185 172-297 (435)
112 cd03691 BipA_TypA_II BipA_TypA 99.6 1E-15 2.2E-20 132.5 10.9 83 355-437 1-86 (86)
113 cd03699 lepA_II lepA_II: This 99.6 1.2E-15 2.7E-20 131.8 10.3 82 355-437 1-86 (86)
114 TIGR03594 GTPase_EngA ribosome 99.6 2.6E-15 5.7E-20 169.1 15.3 115 67-185 171-296 (429)
115 COG1159 Era GTPase [General fu 99.6 4.4E-15 9.6E-20 152.4 14.1 117 67-188 5-130 (298)
116 PRK15494 era GTPase Era; Provi 99.6 6.6E-15 1.4E-19 159.9 16.0 117 66-186 50-174 (339)
117 cd01894 EngA1 EngA1 subfamily. 99.6 8.4E-15 1.8E-19 140.4 13.8 112 72-187 1-120 (157)
118 cd01895 EngA2 EngA2 subfamily. 99.6 1.2E-14 2.7E-19 141.3 14.6 116 68-187 2-128 (174)
119 PF02421 FeoB_N: Ferrous iron 99.6 2.7E-15 5.9E-20 143.3 9.3 109 70-186 2-119 (156)
120 TIGR00436 era GTP-binding prot 99.6 1.2E-14 2.6E-19 153.4 14.8 109 70-185 2-120 (270)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.6 8.7E-15 1.9E-19 142.4 11.4 115 70-186 1-121 (167)
122 PRK03003 GTP-binding protein D 99.6 1.8E-14 3.8E-19 163.8 14.7 116 67-186 210-336 (472)
123 cd03700 eEF2_snRNP_like_II EF2 99.6 1.2E-14 2.6E-19 127.6 9.6 82 355-436 1-92 (93)
124 PRK09518 bifunctional cytidyla 99.6 1.8E-14 3.8E-19 171.3 13.7 115 66-186 448-575 (712)
125 TIGR03594 GTPase_EngA ribosome 99.6 2.3E-14 4.9E-19 161.5 13.8 111 70-186 1-121 (429)
126 PRK03003 GTP-binding protein D 99.5 4.5E-14 9.8E-19 160.4 15.0 116 67-186 37-160 (472)
127 cd04090 eEF2_II_snRNP Loc2 eEF 99.5 3.6E-14 7.9E-19 124.8 10.5 81 355-435 1-91 (94)
128 cd04151 Arl1 Arl1 subfamily. 99.5 5.5E-14 1.2E-18 135.8 12.6 110 70-187 1-115 (158)
129 cd01879 FeoB Ferrous iron tran 99.5 4.8E-14 1E-18 135.5 10.8 107 73-186 1-115 (158)
130 cd04157 Arl6 Arl6 subfamily. 99.5 1.2E-13 2.6E-18 133.5 13.3 111 70-187 1-119 (162)
131 cd01864 Rab19 Rab19 subfamily. 99.5 6.3E-14 1.4E-18 136.3 11.2 115 67-186 2-122 (165)
132 PRK09518 bifunctional cytidyla 99.5 1.5E-13 3.3E-18 163.3 15.7 116 65-186 272-397 (712)
133 cd00878 Arf_Arl Arf (ADP-ribos 99.5 1.6E-13 3.5E-18 132.2 12.4 110 70-187 1-115 (158)
134 PRK00089 era GTPase Era; Revie 99.5 3.5E-13 7.6E-18 144.0 16.1 113 67-185 4-126 (292)
135 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.6E-14 3.5E-19 148.1 5.5 155 68-234 39-209 (225)
136 cd01897 NOG NOG1 is a nucleola 99.5 1.4E-13 2.9E-18 134.1 11.6 113 69-186 1-127 (168)
137 cd01898 Obg Obg subfamily. Th 99.5 2.1E-13 4.5E-18 133.0 12.8 112 70-186 2-128 (170)
138 PRK15467 ethanolamine utilizat 99.5 1.6E-13 3.5E-18 132.9 11.8 102 69-188 2-107 (158)
139 cd04154 Arl2 Arl2 subfamily. 99.5 2.3E-13 5E-18 133.6 13.0 112 67-186 13-129 (173)
140 PRK00093 GTP-binding protein D 99.5 3.9E-13 8.5E-18 151.7 15.0 111 69-185 2-122 (435)
141 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 8.4E-13 1.8E-17 129.9 14.1 111 68-186 15-130 (174)
142 cd04145 M_R_Ras_like M-Ras/R-R 99.4 9.9E-13 2.1E-17 127.3 13.5 112 69-186 3-121 (164)
143 cd00879 Sar1 Sar1 subfamily. 99.4 6.8E-13 1.5E-17 132.2 12.3 111 68-186 19-134 (190)
144 cd04164 trmE TrmE (MnmE, ThdF, 99.4 9.1E-13 2E-17 126.1 12.6 111 70-186 3-121 (157)
145 TIGR00231 small_GTP small GTP- 99.4 1.7E-13 3.7E-18 130.3 7.5 113 69-187 2-123 (161)
146 PRK04213 GTP-binding protein; 99.4 1.1E-12 2.4E-17 132.0 13.6 123 67-199 8-156 (201)
147 COG2229 Predicted GTPase [Gene 99.4 1.5E-12 3.4E-17 124.2 13.6 119 68-188 10-137 (187)
148 TIGR03598 GTPase_YsxC ribosome 99.4 6.2E-13 1.3E-17 131.5 11.2 112 66-186 16-143 (179)
149 cd04159 Arl10_like Arl10-like 99.4 1.4E-12 3.1E-17 124.6 13.2 110 71-187 2-116 (159)
150 cd04114 Rab30 Rab30 subfamily. 99.4 5.4E-13 1.2E-17 130.0 9.9 115 67-186 6-126 (169)
151 cd04163 Era Era subfamily. Er 99.4 4.3E-12 9.3E-17 122.2 14.7 115 68-186 3-125 (168)
152 smart00178 SAR Sar1p-like memb 99.4 2.2E-12 4.7E-17 128.2 12.7 111 68-186 17-132 (184)
153 smart00175 RAB Rab subfamily o 99.4 2.3E-12 4.9E-17 124.6 12.1 112 70-186 2-119 (164)
154 PRK05291 trmE tRNA modificatio 99.4 1.4E-12 3.1E-17 146.8 12.2 110 69-186 216-335 (449)
155 cd00880 Era_like Era (E. coli 99.4 3E-12 6.6E-17 121.7 12.6 111 73-187 1-119 (163)
156 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 1.8E-12 3.9E-17 128.7 11.3 112 69-186 4-123 (183)
157 cd04149 Arf6 Arf6 subfamily. 99.4 3.9E-12 8.4E-17 124.5 13.4 111 68-186 9-124 (168)
158 cd04147 Ras_dva Ras-dva subfam 99.4 1.7E-12 3.6E-17 130.6 11.1 111 70-186 1-118 (198)
159 cd01860 Rab5_related Rab5-rela 99.4 2.7E-12 5.8E-17 124.2 12.0 114 70-186 3-120 (163)
160 cd04155 Arl3 Arl3 subfamily. 99.4 2.6E-12 5.6E-17 125.8 12.0 112 68-187 14-130 (173)
161 smart00173 RAS Ras subfamily o 99.4 2.7E-12 5.8E-17 124.4 11.9 111 70-186 2-119 (164)
162 cd04113 Rab4 Rab4 subfamily. 99.4 2.4E-12 5.2E-17 124.4 11.5 112 70-186 2-119 (161)
163 cd04150 Arf1_5_like Arf1-Arf5- 99.4 4.6E-12 9.9E-17 122.7 13.4 109 70-186 2-115 (159)
164 cd04124 RabL2 RabL2 subfamily. 99.4 2.2E-12 4.9E-17 125.1 11.2 113 70-185 2-117 (161)
165 smart00177 ARF ARF-like small 99.4 5.8E-12 1.3E-16 124.1 14.3 111 68-186 13-128 (175)
166 cd04158 ARD1 ARD1 subfamily. 99.4 3.3E-12 7.1E-17 125.0 12.1 109 70-186 1-114 (169)
167 PRK12298 obgE GTPase CgtA; Rev 99.4 4.4E-12 9.6E-17 139.7 13.9 113 68-186 159-289 (390)
168 cd04106 Rab23_lke Rab23-like s 99.4 4.6E-12 1E-16 122.4 12.4 112 70-186 2-120 (162)
169 cd01878 HflX HflX subfamily. 99.4 7.2E-12 1.6E-16 126.4 13.8 116 66-186 39-167 (204)
170 cd01862 Rab7 Rab7 subfamily. 99.4 5.5E-12 1.2E-16 123.0 12.4 112 70-186 2-123 (172)
171 TIGR02729 Obg_CgtA Obg family 99.4 8E-12 1.7E-16 134.9 14.6 115 66-186 155-287 (329)
172 cd04139 RalA_RalB RalA/RalB su 99.4 4.1E-12 9E-17 122.7 11.2 113 70-186 2-119 (164)
173 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 8.5E-12 1.9E-16 121.5 12.8 110 71-187 2-114 (164)
174 cd01861 Rab6 Rab6 subfamily. 99.3 1.1E-11 2.4E-16 119.7 13.1 111 70-185 2-118 (161)
175 cd04177 RSR1 RSR1 subgroup. R 99.3 6.5E-12 1.4E-16 122.6 11.6 110 70-186 3-120 (168)
176 cd01863 Rab18 Rab18 subfamily. 99.3 6E-12 1.3E-16 121.5 11.0 113 70-185 2-119 (161)
177 PRK12299 obgE GTPase CgtA; Rev 99.3 1E-11 2.2E-16 134.3 13.7 114 67-186 157-285 (335)
178 cd04138 H_N_K_Ras_like H-Ras/N 99.3 1.5E-11 3.2E-16 118.5 13.4 111 70-186 3-120 (162)
179 PTZ00133 ADP-ribosylation fact 99.3 9.8E-12 2.1E-16 123.3 12.4 110 69-186 18-132 (182)
180 cd04156 ARLTS1 ARLTS1 subfamil 99.3 1E-11 2.3E-16 119.7 12.1 109 70-186 1-115 (160)
181 PLN00223 ADP-ribosylation fact 99.3 1.9E-11 4.1E-16 121.2 14.2 112 68-187 17-133 (181)
182 TIGR00450 mnmE_trmE_thdF tRNA 99.3 1.3E-11 2.9E-16 138.3 14.3 113 68-187 203-325 (442)
183 cd04161 Arl2l1_Arl13_like Arl2 99.3 1.3E-11 2.8E-16 120.6 12.5 111 70-188 1-116 (167)
184 PRK00454 engB GTP-binding prot 99.3 1.4E-11 3E-16 123.2 12.8 115 66-186 22-149 (196)
185 PTZ00369 Ras-like protein; Pro 99.3 1.4E-11 3.1E-16 122.8 12.8 115 68-186 5-124 (189)
186 cd01865 Rab3 Rab3 subfamily. 99.3 1.2E-11 2.6E-16 120.3 11.7 113 69-186 2-120 (165)
187 cd01866 Rab2 Rab2 subfamily. 99.3 1.6E-11 3.5E-16 119.8 12.5 115 68-185 4-122 (168)
188 cd04137 RheB Rheb (Ras Homolog 99.3 2E-11 4.3E-16 120.4 13.2 111 69-185 2-119 (180)
189 cd00154 Rab Rab family. Rab G 99.3 1.4E-11 2.9E-16 117.7 11.1 111 70-185 2-118 (159)
190 cd04115 Rab33B_Rab33A Rab33B/R 99.3 8.8E-12 1.9E-16 122.0 9.8 114 68-186 2-123 (170)
191 TIGR02528 EutP ethanolamine ut 99.3 1.2E-11 2.5E-16 117.1 10.4 97 70-186 2-102 (142)
192 cd01881 Obg_like The Obg-like 99.3 1.1E-11 2.3E-16 121.3 10.1 109 73-186 1-134 (176)
193 cd04140 ARHI_like ARHI subfami 99.3 1.5E-11 3.4E-16 119.6 11.1 113 70-186 3-122 (165)
194 cd04175 Rap1 Rap1 subgroup. T 99.3 4.3E-11 9.3E-16 116.1 14.1 110 70-186 3-120 (164)
195 cd01893 Miro1 Miro1 subfamily. 99.3 2.4E-11 5.1E-16 118.4 11.8 112 70-186 2-117 (166)
196 PRK12297 obgE GTPase CgtA; Rev 99.3 3.2E-11 7E-16 133.7 14.3 112 68-185 158-287 (424)
197 cd01867 Rab8_Rab10_Rab13_like 99.3 2.8E-11 6E-16 118.0 12.3 114 68-186 3-122 (167)
198 PRK12296 obgE GTPase CgtA; Rev 99.3 2.9E-11 6.4E-16 135.6 13.9 114 67-186 158-298 (500)
199 cd00876 Ras Ras family. The R 99.3 3.1E-11 6.8E-16 115.9 12.1 111 70-186 1-118 (160)
200 TIGR00437 feoB ferrous iron tr 99.3 1.6E-11 3.6E-16 142.3 12.0 103 75-185 1-112 (591)
201 cd04136 Rap_like Rap-like subf 99.3 3.9E-11 8.6E-16 115.9 12.7 112 69-186 2-120 (163)
202 KOG1423 Ras-like GTPase ERA [C 99.3 6.6E-11 1.4E-15 120.8 14.5 116 65-186 69-199 (379)
203 cd04119 RJL RJL (RabJ-Like) su 99.3 3.5E-11 7.6E-16 116.5 12.2 111 70-185 2-123 (168)
204 cd04146 RERG_RasL11_like RERG/ 99.3 2.3E-11 5E-16 118.2 10.7 112 70-185 1-119 (165)
205 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.3 3.8E-11 8.2E-16 116.7 12.2 114 68-186 2-121 (166)
206 TIGR03156 GTP_HflX GTP-binding 99.3 3.8E-11 8.2E-16 130.9 13.3 115 66-186 187-315 (351)
207 cd04142 RRP22 RRP22 subfamily. 99.3 2.9E-11 6.3E-16 121.6 11.2 112 70-186 2-130 (198)
208 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 5.2E-11 1.1E-15 120.0 12.9 111 70-185 2-123 (201)
209 cd01868 Rab11_like Rab11-like. 99.3 6.2E-11 1.3E-15 115.0 12.9 114 68-186 3-122 (165)
210 cd04123 Rab21 Rab21 subfamily. 99.2 4.7E-11 1E-15 114.9 11.9 112 70-186 2-119 (162)
211 PLN03118 Rab family protein; P 99.2 3.7E-11 7.9E-16 122.1 11.4 113 68-186 14-134 (211)
212 cd00877 Ran Ran (Ras-related n 99.2 3.2E-11 7E-16 117.7 10.6 111 70-185 2-117 (166)
213 cd04112 Rab26 Rab26 subfamily. 99.2 3.9E-11 8.5E-16 119.9 11.4 112 70-185 2-119 (191)
214 cd04122 Rab14 Rab14 subfamily. 99.2 5.6E-11 1.2E-15 115.6 12.2 115 69-186 3-121 (166)
215 PRK11058 GTPase HflX; Provisio 99.2 5.9E-11 1.3E-15 132.3 13.7 114 67-186 196-323 (426)
216 cd04116 Rab9 Rab9 subfamily. 99.2 7.2E-11 1.6E-15 115.2 12.6 114 67-185 4-127 (170)
217 cd04135 Tc10 TC10 subfamily. 99.2 4.2E-11 9.1E-16 117.3 10.8 110 70-186 2-118 (174)
218 cd04110 Rab35 Rab35 subfamily. 99.2 8.8E-11 1.9E-15 118.2 12.7 115 67-186 5-124 (199)
219 cd00882 Ras_like_GTPase Ras-li 99.2 3.6E-11 7.9E-16 112.8 8.7 108 73-187 1-117 (157)
220 cd04144 Ras2 Ras2 subfamily. 99.2 1.5E-10 3.3E-15 115.5 13.4 111 70-186 1-120 (190)
221 COG0486 ThdF Predicted GTPase 99.2 5.7E-11 1.2E-15 129.2 10.8 113 69-188 218-340 (454)
222 cd04176 Rap2 Rap2 subgroup. T 99.2 8E-11 1.7E-15 114.0 10.6 110 70-185 3-119 (163)
223 cd01874 Cdc42 Cdc42 subfamily. 99.2 2.8E-10 6.1E-15 112.1 14.5 111 69-186 2-119 (175)
224 cd04127 Rab27A Rab27a subfamil 99.2 1.7E-10 3.7E-15 113.7 12.8 114 68-186 4-134 (180)
225 cd04120 Rab12 Rab12 subfamily. 99.2 9.7E-11 2.1E-15 118.1 11.0 111 70-185 2-118 (202)
226 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 8E-11 1.7E-15 115.6 10.2 111 69-186 3-121 (172)
227 COG0218 Predicted GTPase [Gene 99.2 2.4E-10 5.3E-15 111.7 13.3 128 66-202 22-166 (200)
228 KOG0052 Translation elongation 99.2 1.1E-11 2.4E-16 131.5 4.2 119 68-186 7-156 (391)
229 cd00157 Rho Rho (Ras homology) 99.2 1.3E-10 2.9E-15 113.1 10.4 112 70-187 2-119 (171)
230 COG0370 FeoB Fe2+ transport sy 99.2 2.3E-10 5E-15 129.5 13.2 109 69-185 4-121 (653)
231 cd04101 RabL4 RabL4 (Rab-like4 99.2 1.5E-10 3.3E-15 112.0 10.2 113 70-186 2-121 (164)
232 cd04143 Rhes_like Rhes_like su 99.1 4.7E-10 1E-14 116.6 14.3 110 70-186 2-127 (247)
233 PLN03110 Rab GTPase; Provision 99.1 1.7E-10 3.6E-15 117.8 10.6 114 67-185 11-130 (216)
234 cd04126 Rab20 Rab20 subfamily. 99.1 4.6E-10 1E-14 114.5 13.7 109 70-186 2-114 (220)
235 smart00176 RAN Ran (Ras-relate 99.1 2E-10 4.4E-15 115.5 10.4 105 74-185 1-112 (200)
236 cd04109 Rab28 Rab28 subfamily. 99.1 3.8E-10 8.3E-15 115.0 12.5 112 70-186 2-123 (215)
237 cd01876 YihA_EngB The YihA (En 99.1 5.8E-10 1.3E-14 107.6 13.1 110 71-186 2-124 (170)
238 cd04132 Rho4_like Rho4-like su 99.1 5.1E-10 1.1E-14 111.1 12.9 110 70-186 2-119 (187)
239 cd04105 SR_beta Signal recogni 99.1 2.5E-10 5.4E-15 115.3 10.3 112 69-188 1-125 (203)
240 PLN03071 GTP-binding nuclear p 99.1 5.3E-10 1.1E-14 114.3 12.8 116 67-185 12-130 (219)
241 PLN03108 Rab family protein; P 99.1 7.3E-10 1.6E-14 112.5 13.0 115 67-186 5-125 (210)
242 cd04130 Wrch_1 Wrch-1 subfamil 99.1 4.7E-10 1E-14 110.0 11.0 111 70-186 2-118 (173)
243 PF00025 Arf: ADP-ribosylation 99.1 2.1E-10 4.5E-15 113.1 8.4 114 66-187 12-130 (175)
244 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 6.7E-10 1.5E-14 108.9 11.9 110 70-186 2-120 (170)
245 cd04125 RabA_like RabA-like su 99.1 2.9E-10 6.4E-15 113.1 9.4 114 70-186 2-119 (188)
246 cd04134 Rho3 Rho3 subfamily. 99.1 7.6E-10 1.6E-14 110.4 12.3 112 69-187 1-119 (189)
247 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 1.2E-09 2.6E-14 109.7 12.7 115 69-187 1-131 (196)
248 cd01870 RhoA_like RhoA-like su 99.1 6.9E-10 1.5E-14 108.8 10.7 111 69-186 2-119 (175)
249 cd04118 Rab24 Rab24 subfamily. 99.1 9.1E-10 2E-14 110.0 11.8 112 70-186 2-119 (193)
250 cd04121 Rab40 Rab40 subfamily. 99.1 1.6E-09 3.6E-14 108.0 13.4 116 66-186 4-124 (189)
251 PF03144 GTP_EFTU_D2: Elongati 99.1 1.7E-10 3.6E-15 96.7 5.0 68 369-436 1-74 (74)
252 smart00174 RHO Rho (Ras homolo 99.1 7.6E-10 1.7E-14 108.3 10.4 109 71-186 1-116 (174)
253 cd01871 Rac1_like Rac1-like su 99.1 1.8E-09 3.9E-14 106.2 13.1 111 69-186 2-119 (174)
254 cd01892 Miro2 Miro2 subfamily. 99.0 1.2E-09 2.6E-14 107.0 11.5 114 66-186 2-122 (169)
255 PF01926 MMR_HSR1: 50S ribosom 99.0 8E-10 1.7E-14 101.0 8.4 105 70-181 1-116 (116)
256 cd04111 Rab39 Rab39 subfamily. 99.0 1.6E-09 3.5E-14 110.1 10.9 113 69-186 3-123 (211)
257 cd04128 Spg1 Spg1p. Spg1p (se 99.0 1.9E-09 4.1E-14 106.9 11.1 111 70-186 2-118 (182)
258 cd01875 RhoG RhoG subfamily. 99.0 2.8E-09 6.1E-14 106.6 11.7 111 69-186 4-121 (191)
259 cd04148 RGK RGK subfamily. Th 99.0 1.7E-09 3.6E-14 110.8 9.4 112 70-186 2-120 (221)
260 PF10662 PduV-EutP: Ethanolami 99.0 2E-09 4.2E-14 100.9 9.0 97 69-185 2-102 (143)
261 cd04117 Rab15 Rab15 subfamily. 99.0 5.8E-09 1.3E-13 101.1 12.6 112 70-186 2-119 (161)
262 cd01896 DRG The developmentall 99.0 3.5E-09 7.6E-14 109.2 11.7 97 70-173 2-106 (233)
263 cd04133 Rop_like Rop subfamily 98.9 7.6E-09 1.6E-13 102.0 11.3 111 69-186 2-119 (176)
264 KOG0075 GTP-binding ADP-ribosy 98.9 3.1E-08 6.7E-13 90.8 13.3 112 69-187 21-137 (186)
265 cd04131 Rnd Rnd subfamily. Th 98.8 1.8E-08 3.9E-13 99.6 11.3 110 70-186 3-119 (178)
266 PTZ00132 GTP-binding nuclear p 98.8 2.6E-08 5.5E-13 101.5 12.7 115 68-185 9-126 (215)
267 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.8 2.6E-08 5.7E-13 98.8 12.2 112 67-185 4-122 (182)
268 KOG0070 GTP-binding ADP-ribosy 98.8 4.6E-08 1E-12 94.0 13.1 112 68-187 17-133 (181)
269 cd03693 EF1_alpha_II EF1_alpha 98.8 3.1E-08 6.8E-13 86.5 10.8 85 352-440 2-90 (91)
270 PTZ00099 rab6; Provisional 98.8 2.9E-08 6.3E-13 97.9 11.5 68 119-186 28-99 (176)
271 cd03698 eRF3_II_like eRF3_II_l 98.8 3.7E-08 8E-13 84.5 10.5 79 354-437 1-83 (83)
272 PRK09866 hypothetical protein; 98.8 4.7E-08 1E-12 110.5 13.8 67 119-185 229-302 (741)
273 COG2262 HflX GTPases [General 98.8 4.9E-08 1.1E-12 104.8 13.1 116 65-186 189-318 (411)
274 cd01342 Translation_Factor_II_ 98.8 3.1E-08 6.7E-13 83.5 9.4 78 355-436 1-82 (83)
275 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.8 4.8E-08 1E-12 100.4 12.4 111 68-185 13-130 (232)
276 cd04103 Centaurin_gamma Centau 98.8 6.9E-08 1.5E-12 93.5 12.8 104 70-185 2-112 (158)
277 KOG1489 Predicted GTP-binding 98.8 4E-08 8.7E-13 101.5 11.5 115 66-186 194-326 (366)
278 PF09439 SRPRB: Signal recogni 98.8 8.1E-09 1.7E-13 101.1 5.6 111 68-188 3-128 (181)
279 cd04129 Rho2 Rho2 subfamily. 98.8 6.3E-08 1.4E-12 96.4 12.0 111 69-186 2-119 (187)
280 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.7 7E-08 1.5E-12 98.7 12.0 111 69-186 2-119 (222)
281 cd04104 p47_IIGP_like p47 (47- 98.7 8E-08 1.7E-12 96.6 11.5 108 69-186 2-121 (197)
282 cd01850 CDC_Septin CDC/Septin. 98.7 4.4E-08 9.5E-13 103.6 9.6 131 69-200 5-172 (276)
283 COG1084 Predicted GTPase [Gene 98.7 1E-07 2.2E-12 99.5 10.5 113 67-186 167-294 (346)
284 KOG1191 Mitochondrial GTPase [ 98.6 1.1E-07 2.4E-12 103.5 10.2 111 66-182 266-387 (531)
285 cd01873 RhoBTB RhoBTB subfamil 98.6 1.9E-07 4.1E-12 93.7 11.1 114 69-186 3-134 (195)
286 PF00071 Ras: Ras family; Int 98.6 2.6E-07 5.7E-12 89.1 10.7 112 70-186 1-118 (162)
287 PRK13768 GTPase; Provisional 98.6 4.9E-07 1.1E-11 94.4 13.3 70 119-188 96-178 (253)
288 cd01899 Ygr210 Ygr210 subfamil 98.6 4.8E-07 1E-11 97.3 13.5 79 71-155 1-111 (318)
289 KOG0073 GTP-binding ADP-ribosy 98.6 1E-06 2.2E-11 82.8 12.8 112 68-187 16-132 (185)
290 cd04089 eRF3_II eRF3_II: domai 98.6 6.7E-07 1.5E-11 76.5 10.6 78 354-437 1-82 (82)
291 PF08477 Miro: Miro-like prote 98.5 4.3E-08 9.3E-13 89.6 2.7 113 70-183 1-119 (119)
292 PRK09435 membrane ATPase/prote 98.5 3E-07 6.6E-12 98.9 8.9 124 67-199 55-222 (332)
293 KOG0084 GTPase Rab1/YPT1, smal 98.5 1.4E-06 3E-11 84.6 12.1 114 68-186 9-128 (205)
294 KOG0090 Signal recognition par 98.4 5E-06 1.1E-10 81.7 14.4 117 68-192 38-165 (238)
295 TIGR02836 spore_IV_A stage IV 98.4 1.1E-06 2.4E-11 94.8 10.6 141 67-207 16-215 (492)
296 cd03696 selB_II selB_II: this 98.4 1.4E-06 3E-11 74.7 9.3 79 355-437 1-83 (83)
297 cd03695 CysN_NodQ_II CysN_NodQ 98.4 1.9E-06 4.1E-11 73.5 9.9 79 355-437 1-81 (81)
298 PRK09602 translation-associate 98.4 2.3E-06 4.9E-11 94.8 12.9 80 70-155 3-114 (396)
299 cd01859 MJ1464 MJ1464. This f 98.4 1.6E-06 3.5E-11 83.6 10.1 50 136-185 5-54 (156)
300 cd04102 RabL3 RabL3 (Rab-like3 98.4 1.6E-06 3.4E-11 87.4 10.4 110 70-186 2-143 (202)
301 PLN00023 GTP-binding protein; 98.4 1.5E-06 3.2E-11 92.5 10.5 117 67-186 20-165 (334)
302 cd01853 Toc34_like Toc34-like 98.4 2.1E-06 4.6E-11 89.2 11.5 115 66-203 29-147 (249)
303 KOG0078 GTP-binding protein SE 98.4 5.8E-06 1.3E-10 81.4 13.0 116 66-186 10-131 (207)
304 KOG0072 GTP-binding ADP-ribosy 98.3 3E-06 6.4E-11 77.8 9.7 111 69-187 19-134 (182)
305 KOG0092 GTPase Rab5/YPT51 and 98.3 2.4E-06 5.1E-11 82.6 9.3 111 69-186 6-124 (200)
306 COG3596 Predicted GTPase [Gene 98.3 9.9E-06 2.2E-10 82.9 14.1 111 66-186 37-162 (296)
307 cd03697 EFTU_II EFTU_II: Elong 98.3 3E-06 6.4E-11 73.4 8.9 80 355-438 1-86 (87)
308 cd03694 GTPBP_II Domain II of 98.3 4.9E-06 1.1E-10 72.0 10.1 78 356-437 2-87 (87)
309 smart00053 DYNc Dynamin, GTPas 98.3 4.6E-06 9.9E-11 85.9 10.7 69 120-188 125-208 (240)
310 COG0536 Obg Predicted GTPase [ 98.3 5.2E-06 1.1E-10 87.2 11.1 113 68-186 159-289 (369)
311 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.3 1E-05 2.3E-10 78.3 12.1 111 69-186 23-142 (221)
312 TIGR00073 hypB hydrogenase acc 98.2 1.1E-05 2.4E-10 81.7 10.8 114 65-186 19-162 (207)
313 cd01858 NGP_1 NGP-1. Autoanti 98.2 1.1E-05 2.4E-10 77.9 10.0 51 136-186 1-53 (157)
314 COG1100 GTPase SAR1 and relate 98.1 4.1E-06 8.8E-11 85.2 7.2 115 69-188 6-127 (219)
315 PF04670 Gtr1_RagA: Gtr1/RagA 98.1 7.8E-06 1.7E-10 83.7 8.1 126 70-199 1-139 (232)
316 KOG0071 GTP-binding ADP-ribosy 98.1 4.1E-05 9E-10 70.1 11.8 121 69-200 18-143 (180)
317 KOG1532 GTPase XAB1, interacts 98.1 2E-05 4.4E-10 80.0 10.2 71 119-189 115-198 (366)
318 KOG0076 GTP-binding ADP-ribosy 98.1 1.3E-05 2.8E-10 76.2 7.8 115 69-187 18-141 (197)
319 KOG0080 GTPase Rab18, small G 98.0 1.6E-05 3.5E-10 74.3 7.0 114 68-186 11-131 (209)
320 KOG0093 GTPase Rab3, small G p 98.0 7.4E-05 1.6E-09 68.9 11.1 113 70-187 23-141 (193)
321 KOG0098 GTPase Rab2, small G p 97.9 4.4E-05 9.4E-10 73.5 9.1 113 69-186 7-125 (216)
322 cd03692 mtIF2_IVc mtIF2_IVc: t 97.9 8.9E-05 1.9E-09 63.7 10.2 75 357-435 3-82 (84)
323 COG1163 DRG Predicted GTPase [ 97.9 0.00011 2.4E-09 76.9 12.6 114 66-186 61-187 (365)
324 PRK09601 GTP-binding protein Y 97.9 0.00029 6.3E-09 76.7 15.9 80 69-154 3-107 (364)
325 cd01856 YlqF YlqF. Proteins o 97.9 4.5E-05 9.8E-10 74.8 8.6 57 127-185 2-59 (171)
326 TIGR03596 GTPase_YlqF ribosome 97.9 4.3E-05 9.3E-10 81.0 8.8 56 128-185 5-61 (276)
327 KOG0395 Ras-related GTPase [Ge 97.9 0.0002 4.4E-09 71.7 13.2 112 68-186 3-122 (196)
328 TIGR00991 3a0901s02IAP34 GTP-b 97.9 0.00013 2.9E-09 77.3 12.2 114 66-185 36-166 (313)
329 cd01855 YqeH YqeH. YqeH is an 97.9 5.5E-05 1.2E-09 75.4 9.0 57 128-186 19-75 (190)
330 TIGR00750 lao LAO/AO transport 97.9 9.4E-05 2E-09 79.4 11.3 64 118-188 125-188 (300)
331 KOG0087 GTPase Rab11/YPT3, sma 97.8 6E-05 1.3E-09 74.1 7.7 113 69-186 15-133 (222)
332 cd01849 YlqF_related_GTPase Yl 97.7 8.1E-05 1.8E-09 71.7 7.8 42 145-186 1-43 (155)
333 COG5192 BMS1 GTP-binding prote 97.7 7.4E-05 1.6E-09 82.2 8.1 121 69-202 70-191 (1077)
334 KOG0394 Ras-related GTPase [Ge 97.7 0.00012 2.5E-09 70.5 7.8 112 68-186 9-132 (210)
335 PF03029 ATP_bind_1: Conserved 97.7 0.00028 6.1E-09 73.0 11.1 68 121-188 92-172 (238)
336 KOG0074 GTP-binding ADP-ribosy 97.7 0.00022 4.7E-09 65.5 8.6 111 69-187 18-134 (185)
337 KOG0086 GTPase Rab4, small G p 97.6 0.00019 4.2E-09 66.5 8.1 116 69-187 10-129 (214)
338 PF00350 Dynamin_N: Dynamin fa 97.6 0.00011 2.3E-09 71.5 6.1 64 119-182 100-168 (168)
339 COG4917 EutP Ethanolamine util 97.6 0.0002 4.3E-09 64.6 7.1 98 69-185 2-103 (148)
340 KOG0088 GTPase Rab21, small G 97.6 5.5E-05 1.2E-09 70.5 3.2 111 69-186 14-132 (218)
341 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.0004 8.6E-09 65.8 8.7 52 135-186 3-56 (141)
342 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00024 5.3E-09 75.7 8.0 57 127-185 7-64 (287)
343 PTZ00258 GTP-binding protein; 97.5 0.00018 4E-09 79.1 7.2 82 67-154 20-126 (390)
344 cd01900 YchF YchF subfamily. 97.5 0.00015 3.2E-09 76.4 5.6 79 71-155 1-104 (274)
345 KOG0095 GTPase Rab30, small G 97.4 0.0017 3.6E-08 60.1 11.1 111 69-186 8-126 (213)
346 cd03702 IF2_mtIF2_II This fami 97.4 0.0012 2.5E-08 57.9 9.4 77 356-437 2-79 (95)
347 cd03110 Fer4_NifH_child This p 97.4 0.00069 1.5E-08 66.8 9.1 69 117-187 90-158 (179)
348 KOG2486 Predicted GTPase [Gene 97.4 0.0007 1.5E-08 69.5 8.7 116 66-186 134-262 (320)
349 KOG0079 GTP-binding protein H- 97.3 0.0009 2E-08 62.0 8.2 111 71-186 11-126 (198)
350 KOG0077 Vesicle coat complex C 97.3 0.00041 8.9E-09 65.7 6.1 122 69-201 21-147 (193)
351 PF04548 AIG1: AIG1 family; I 97.3 0.0015 3.1E-08 66.5 10.5 116 69-188 1-132 (212)
352 KOG0083 GTPase Rab26/Rab37, sm 97.3 0.00079 1.7E-08 61.1 7.0 112 73-186 2-117 (192)
353 PF03308 ArgK: ArgK protein; 97.2 0.00051 1.1E-08 70.5 5.5 112 68-188 29-183 (266)
354 cd03688 eIF2_gamma_II eIF2_gam 97.2 0.0037 8E-08 55.7 10.1 73 351-427 2-95 (113)
355 PRK12289 GTPase RsgA; Reviewed 97.1 0.0016 3.5E-08 71.1 9.3 46 140-185 86-133 (352)
356 cd02036 MinD Bacterial cell di 97.1 0.0033 7.1E-08 61.5 10.0 87 121-210 64-151 (179)
357 KOG1490 GTP-binding protein CR 97.1 0.0031 6.6E-08 69.6 10.3 113 66-186 166-295 (620)
358 PRK10463 hydrogenase nickel in 97.0 0.001 2.2E-08 70.2 6.3 24 299-322 263-286 (290)
359 PRK14722 flhF flagellar biosyn 97.0 0.00093 2E-08 73.2 6.2 119 67-185 136-294 (374)
360 COG5019 CDC3 Septin family pro 97.0 0.0059 1.3E-07 65.4 11.7 143 69-212 24-203 (373)
361 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.0026 5.7E-08 67.8 8.9 46 141-186 76-123 (287)
362 KOG0091 GTPase Rab39, small G 97.0 0.01 2.2E-07 56.2 11.3 105 70-186 10-130 (213)
363 PRK00098 GTPase RsgA; Reviewed 96.9 0.0024 5.1E-08 68.5 8.3 46 140-185 77-124 (298)
364 cd03701 IF2_IF5B_II IF2_IF5B_I 96.9 0.006 1.3E-07 53.6 9.1 76 356-436 2-78 (95)
365 PF00735 Septin: Septin; Inte 96.9 0.0054 1.2E-07 65.1 10.5 131 69-200 5-171 (281)
366 COG1703 ArgK Putative periplas 96.9 0.0015 3.3E-08 68.0 6.1 113 69-188 52-205 (323)
367 smart00275 G_alpha G protein a 96.9 0.014 3E-07 63.8 13.5 84 103-186 167-265 (342)
368 PRK01889 GTPase RsgA; Reviewed 96.9 0.0049 1.1E-07 67.7 10.0 46 141-186 110-156 (356)
369 PF14578 GTP_EFTU_D4: Elongati 96.8 0.01 2.2E-07 50.1 9.4 75 354-436 4-80 (81)
370 cd03703 aeIF5B_II aeIF5B_II: T 96.8 0.0084 1.8E-07 53.7 9.3 80 357-436 3-93 (110)
371 TIGR00101 ureG urease accessor 96.8 0.0035 7.6E-08 63.0 7.8 58 120-186 92-151 (199)
372 cd00066 G-alpha G protein alph 96.8 0.013 2.7E-07 63.5 12.5 83 104-186 145-242 (317)
373 TIGR00157 ribosome small subun 96.7 0.0049 1.1E-07 64.1 8.5 47 140-186 33-81 (245)
374 PF05049 IIGP: Interferon-indu 96.7 0.0057 1.2E-07 66.8 8.9 112 68-184 35-153 (376)
375 TIGR03597 GTPase_YqeH ribosome 96.6 0.0073 1.6E-07 66.5 9.3 53 132-186 52-104 (360)
376 KOG4252 GTP-binding protein [S 96.6 0.00093 2E-08 63.8 1.5 109 67-186 19-138 (246)
377 KOG0410 Predicted GTP binding 96.6 0.0076 1.7E-07 63.2 8.1 104 66-174 176-289 (410)
378 KOG1954 Endocytosis/signaling 96.5 0.018 3.9E-07 61.4 10.7 83 120-202 147-242 (532)
379 TIGR00993 3a0901s04IAP86 chlor 96.5 0.011 2.4E-07 68.2 9.9 61 68-133 118-179 (763)
380 PRK00771 signal recognition pa 96.5 0.06 1.3E-06 60.5 15.4 114 67-185 94-245 (437)
381 PRK10867 signal recognition pa 96.4 0.093 2E-06 58.9 16.1 128 68-202 100-268 (433)
382 TIGR01425 SRP54_euk signal rec 96.4 0.01 2.2E-07 66.3 8.2 115 68-185 100-252 (429)
383 KOG0393 Ras-related small GTPa 96.3 0.035 7.6E-07 55.2 11.0 111 69-185 5-122 (198)
384 KOG3887 Predicted small GTPase 96.3 0.039 8.4E-07 55.7 11.0 117 69-189 28-152 (347)
385 PRK13796 GTPase YqeH; Provisio 96.3 0.019 4E-07 63.4 9.8 52 132-186 58-110 (365)
386 PRK12288 GTPase RsgA; Reviewed 96.3 0.022 4.7E-07 62.3 10.0 45 142-186 119-164 (347)
387 KOG0081 GTPase Rab27, small G 96.2 0.041 8.8E-07 51.8 10.1 112 71-186 12-138 (219)
388 KOG3886 GTP-binding protein [S 96.2 0.0094 2E-07 59.7 5.9 126 68-197 4-141 (295)
389 KOG2655 Septin family protein 96.0 0.038 8.2E-07 59.8 10.1 139 69-208 22-195 (366)
390 TIGR00257 IMPACT_YIGZ uncharac 96.0 0.074 1.6E-06 53.4 11.6 111 601-716 88-200 (204)
391 TIGR00064 ftsY signal recognit 95.9 0.027 5.9E-07 59.5 8.5 116 67-185 71-230 (272)
392 cd03115 SRP The signal recogni 95.9 0.025 5.5E-07 55.3 7.6 67 118-186 81-153 (173)
393 cd01851 GBP Guanylate-binding 95.8 0.0081 1.8E-07 61.6 3.8 87 66-154 5-102 (224)
394 PRK11568 hypothetical protein; 95.8 0.12 2.6E-06 52.0 11.8 111 601-716 88-200 (204)
395 TIGR01007 eps_fam capsular exo 95.7 0.031 6.6E-07 56.3 7.5 68 118-186 126-194 (204)
396 PRK10416 signal recognition pa 95.6 0.022 4.9E-07 61.5 6.4 123 67-195 113-281 (318)
397 cd01849 YlqF_related_GTPase Yl 95.6 0.0063 1.4E-07 58.5 1.9 57 67-130 99-155 (155)
398 KOG1547 Septin CDC10 and relat 95.5 0.12 2.6E-06 52.2 10.6 132 69-201 47-214 (336)
399 cd04178 Nucleostemin_like Nucl 95.4 0.033 7.3E-07 54.6 6.4 42 145-186 1-44 (172)
400 cd02037 MRP-like MRP (Multiple 95.3 0.061 1.3E-06 52.4 7.9 83 118-202 66-159 (169)
401 cd04178 Nucleostemin_like Nucl 95.3 0.013 2.8E-07 57.5 3.1 56 68-130 117-172 (172)
402 COG0541 Ffh Signal recognition 95.3 0.77 1.7E-05 50.8 16.8 115 68-185 100-252 (451)
403 TIGR01969 minD_arch cell divis 95.2 0.1 2.2E-06 54.1 9.7 88 118-210 107-195 (251)
404 PF09547 Spore_IV_A: Stage IV 95.2 0.067 1.5E-06 58.6 8.4 142 67-209 16-217 (492)
405 COG0378 HypB Ni2+-binding GTPa 95.1 0.14 3.1E-06 50.5 9.5 25 299-323 175-199 (202)
406 cd01858 NGP_1 NGP-1. Autoanti 95.1 0.017 3.7E-07 55.5 3.2 54 68-130 102-157 (157)
407 cd02038 FleN-like FleN is a me 95.0 0.066 1.4E-06 50.5 6.8 75 120-197 45-121 (139)
408 KOG1673 Ras GTPases [General f 95.0 0.19 4E-06 47.4 9.4 113 68-185 20-137 (205)
409 cd01855 YqeH YqeH. YqeH is an 94.9 0.0096 2.1E-07 59.3 0.9 59 69-130 128-190 (190)
410 KOG1486 GTP-binding protein DR 94.9 0.017 3.7E-07 58.5 2.6 86 66-156 60-152 (364)
411 cd03112 CobW_like The function 94.9 0.067 1.5E-06 51.7 6.7 63 119-184 86-158 (158)
412 TIGR00959 ffh signal recogniti 94.8 0.74 1.6E-05 51.8 15.5 78 118-202 181-267 (428)
413 KOG0097 GTPase Rab14, small G 94.7 0.12 2.7E-06 47.5 7.3 116 68-186 11-130 (215)
414 KOG0448 Mitofusin 1 GTPase, in 94.6 0.071 1.5E-06 61.3 6.8 88 109-199 188-287 (749)
415 TIGR03596 GTPase_YlqF ribosome 94.6 0.079 1.7E-06 56.1 7.0 54 68-130 118-173 (276)
416 PRK09563 rbgA GTPase YlqF; Rev 94.5 0.12 2.7E-06 55.0 8.3 57 68-132 121-178 (287)
417 TIGR03597 GTPase_YqeH ribosome 94.4 0.016 3.5E-07 63.9 1.2 124 69-202 155-297 (360)
418 PF06858 NOG1: Nucleolar GTP-b 94.3 0.087 1.9E-06 41.3 4.7 47 137-183 6-58 (58)
419 cd03111 CpaE_like This protein 94.3 0.11 2.5E-06 46.4 6.2 59 121-181 44-106 (106)
420 PRK14974 cell division protein 94.2 0.13 2.8E-06 55.9 7.7 114 67-185 139-292 (336)
421 PRK13849 putative crown gall t 94.1 0.18 3.9E-06 51.9 8.1 65 117-183 81-151 (231)
422 TIGR01968 minD_bact septum sit 94.1 0.16 3.5E-06 52.9 7.9 84 118-203 110-196 (261)
423 PRK12727 flagellar biosynthesi 94.0 0.19 4.1E-06 57.4 8.6 128 67-197 349-508 (559)
424 KOG0096 GTPase Ran/TC4/GSP1 (n 94.0 0.094 2E-06 51.2 5.3 113 67-186 9-128 (216)
425 PRK11889 flhF flagellar biosyn 93.9 0.2 4.3E-06 55.2 8.3 116 67-186 240-391 (436)
426 TIGR03371 cellulose_yhjQ cellu 93.9 0.16 3.5E-06 52.5 7.5 83 119-203 114-199 (246)
427 PHA02518 ParA-like protein; Pr 93.9 0.26 5.6E-06 49.5 8.7 66 118-185 75-146 (211)
428 CHL00175 minD septum-site dete 93.9 0.18 4E-06 53.4 8.0 89 119-210 126-217 (281)
429 COG1162 Predicted GTPases [Gen 93.8 0.32 7E-06 51.5 9.4 45 144-188 80-126 (301)
430 cd01857 HSR1_MMR1 HSR1/MMR1. 93.7 0.033 7.2E-07 52.6 1.7 56 69-131 84-139 (141)
431 cd01856 YlqF YlqF. Proteins o 93.4 0.063 1.4E-06 52.4 3.2 56 68-130 115-170 (171)
432 cd02032 Bchl_like This family 93.3 0.32 6.9E-06 51.1 8.6 86 118-210 114-204 (267)
433 PF09186 DUF1949: Domain of un 93.3 0.17 3.6E-06 39.4 4.9 56 655-712 1-56 (56)
434 PRK11670 antiporter inner memb 93.3 0.34 7.4E-06 53.5 9.1 94 117-211 213-315 (369)
435 cd03114 ArgK-like The function 93.1 0.18 3.9E-06 48.1 5.8 59 118-183 90-148 (148)
436 TIGR00487 IF-2 translation ini 93.1 0.41 8.8E-06 56.2 9.7 79 357-436 495-575 (587)
437 PRK12723 flagellar biosynthesi 92.9 0.18 3.8E-06 56.0 6.1 116 68-185 174-325 (388)
438 TIGR00092 GTP-binding protein 92.5 0.27 5.9E-06 53.8 6.7 81 69-155 3-109 (368)
439 TIGR03815 CpaE_hom_Actino heli 92.5 0.45 9.7E-06 51.6 8.5 81 118-204 203-283 (322)
440 PRK05306 infB translation init 92.4 0.73 1.6E-05 55.7 10.8 79 357-436 697-777 (787)
441 PRK10818 cell division inhibit 92.3 0.45 9.9E-06 50.0 8.2 90 118-210 112-212 (270)
442 KOG3883 Ras family small GTPas 92.3 0.82 1.8E-05 43.2 8.6 114 68-186 9-132 (198)
443 cd02117 NifH_like This family 92.3 0.36 7.8E-06 48.9 7.0 86 117-206 114-207 (212)
444 cd01854 YjeQ_engC YjeQ/EngC. 92.3 0.064 1.4E-06 57.2 1.6 61 69-134 162-227 (287)
445 TIGR00157 ribosome small subun 92.1 0.064 1.4E-06 55.8 1.3 61 69-133 121-184 (245)
446 PF01656 CbiA: CobQ/CobB/MinD/ 92.1 0.26 5.5E-06 48.7 5.6 80 119-200 94-177 (195)
447 PF03193 DUF258: Protein of un 92.1 0.06 1.3E-06 52.0 0.9 65 69-134 36-101 (161)
448 PRK13185 chlL protochlorophyll 92.0 0.44 9.4E-06 50.2 7.5 82 118-205 116-202 (270)
449 CHL00189 infB translation init 91.9 0.7 1.5E-05 55.4 9.7 78 357-436 652-731 (742)
450 PRK13760 putative RNA-associat 91.7 0.36 7.8E-06 49.2 6.1 66 650-716 163-228 (231)
451 PRK12288 GTPase RsgA; Reviewed 91.6 0.098 2.1E-06 57.2 2.1 62 70-134 207-271 (347)
452 COG1149 MinD superfamily P-loo 91.6 0.68 1.5E-05 48.1 8.0 64 120-185 164-227 (284)
453 PF00448 SRP54: SRP54-type pro 91.3 0.51 1.1E-05 47.3 6.7 66 118-185 82-153 (196)
454 TIGR01281 DPOR_bchL light-inde 91.1 0.48 1E-05 49.8 6.7 83 117-205 113-200 (268)
455 PRK12724 flagellar biosynthesi 90.9 0.66 1.4E-05 51.7 7.6 65 118-185 298-372 (432)
456 PRK13232 nifH nitrogenase redu 90.8 0.63 1.4E-05 49.1 7.3 86 116-203 113-203 (273)
457 COG1161 Predicted GTPases [Gen 90.7 0.14 3E-06 55.6 2.1 56 69-131 133-188 (322)
458 CHL00072 chlL photochlorophyll 90.7 0.64 1.4E-05 49.6 7.3 86 118-210 114-204 (290)
459 cd02035 ArsA ArsA ATPase funct 90.7 1 2.2E-05 45.9 8.4 68 119-186 113-184 (217)
460 TIGR03029 EpsG chain length de 90.6 0.66 1.4E-05 48.9 7.2 63 118-181 211-274 (274)
461 PRK00090 bioD dithiobiotin syn 90.6 0.3 6.6E-06 49.7 4.4 86 118-203 102-194 (222)
462 TIGR03348 VI_IcmF type VI secr 90.6 0.48 1E-05 60.3 7.0 116 67-185 110-256 (1169)
463 PRK12726 flagellar biosynthesi 90.5 0.84 1.8E-05 50.2 7.9 63 119-185 285-355 (407)
464 PRK13869 plasmid-partitioning 90.5 0.57 1.2E-05 52.5 6.9 85 118-204 250-346 (405)
465 cd01859 MJ1464 MJ1464. This f 90.4 0.27 5.9E-06 47.0 3.7 57 67-130 100-156 (156)
466 COG0532 InfB Translation initi 90.2 1.3 2.9E-05 50.0 9.3 79 357-436 416-496 (509)
467 PRK13796 GTPase YqeH; Provisio 90.1 0.15 3.3E-06 56.3 1.8 61 68-131 160-221 (365)
468 KOG0082 G-protein alpha subuni 90.0 0.59 1.3E-05 50.7 6.1 84 103-186 178-276 (354)
469 PRK06995 flhF flagellar biosyn 89.9 0.53 1.2E-05 53.6 6.0 114 68-185 256-404 (484)
470 TIGR03453 partition_RepA plasm 89.6 0.73 1.6E-05 51.4 6.8 91 118-210 233-335 (387)
471 COG3640 CooC CO dehydrogenase 89.5 1.1 2.3E-05 45.7 7.0 65 118-185 132-198 (255)
472 PRK05703 flhF flagellar biosyn 89.3 0.86 1.9E-05 51.3 7.1 126 68-196 221-380 (424)
473 KOG1707 Predicted Ras related/ 89.2 0.36 7.7E-06 54.8 3.8 114 68-186 9-129 (625)
474 PHA02519 plasmid partition pro 88.9 1.4 2.9E-05 49.2 8.2 87 118-206 233-329 (387)
475 PRK12289 GTPase RsgA; Reviewed 88.7 0.25 5.5E-06 54.1 2.3 62 70-134 174-238 (352)
476 PRK13705 plasmid-partitioning 88.2 1.6 3.5E-05 48.6 8.3 86 118-205 233-328 (388)
477 PRK10037 cell division protein 88.1 1.8 4E-05 44.9 8.2 58 118-183 116-174 (250)
478 COG3523 IcmF Type VI protein s 87.9 1.8 3.9E-05 54.1 9.0 114 68-186 125-270 (1188)
479 cd02040 NifH NifH gene encodes 87.4 1.2 2.5E-05 46.8 6.3 91 118-210 115-210 (270)
480 PRK00098 GTPase RsgA; Reviewed 87.2 0.31 6.6E-06 52.3 1.7 61 69-133 165-229 (298)
481 KOG1533 Predicted GTPase [Gene 86.8 4.2 9.1E-05 41.5 9.2 68 119-186 96-177 (290)
482 PRK14723 flhF flagellar biosyn 86.4 1.4 3.1E-05 52.7 6.7 114 68-185 185-336 (767)
483 KOG0447 Dynamin-like GTP bindi 85.8 2.7 5.8E-05 47.4 8.0 84 104-187 393-494 (980)
484 cd02042 ParA ParA and ParB of 85.7 1.6 3.4E-05 38.5 5.3 45 120-166 40-84 (104)
485 cd00550 ArsA_ATPase Oxyanion-t 85.6 2.8 6.2E-05 43.7 8.0 86 118-203 123-231 (254)
486 TIGR02475 CobW cobalamin biosy 85.6 3.5 7.5E-05 45.1 8.9 129 67-199 3-201 (341)
487 KOG2484 GTPase [General functi 85.4 2.6 5.6E-05 46.1 7.5 79 121-199 123-205 (435)
488 PRK14721 flhF flagellar biosyn 85.3 2.9 6.3E-05 46.9 8.2 115 67-185 190-339 (420)
489 TIGR00347 bioD dethiobiotin sy 85.1 2.2 4.7E-05 41.2 6.4 61 118-180 98-166 (166)
490 COG0552 FtsY Signal recognitio 85.0 1.9 4.2E-05 46.2 6.3 111 68-183 139-295 (340)
491 PF00503 G-alpha: G-protein al 84.5 0.75 1.6E-05 51.3 3.2 82 104-185 219-316 (389)
492 PRK06731 flhF flagellar biosyn 84.4 2.6 5.6E-05 44.5 7.0 64 119-186 154-225 (270)
493 KOG1534 Putative transcription 84.2 5.9 0.00013 39.8 8.7 78 120-200 98-189 (273)
494 TIGR03018 pepcterm_TyrKin exop 84.0 2.6 5.7E-05 42.4 6.6 57 121-180 150-207 (207)
495 KOG4181 Uncharacterized conser 83.7 4.2 9.1E-05 43.6 7.9 120 65-189 185-359 (491)
496 TIGR01005 eps_transp_fam exopo 83.6 2 4.4E-05 52.3 6.6 67 118-185 654-721 (754)
497 COG1161 Predicted GTPases [Gen 83.2 2.1 4.5E-05 46.5 5.8 72 124-200 14-86 (322)
498 COG1192 Soj ATPases involved i 82.9 2.7 6E-05 43.7 6.5 83 117-201 117-206 (259)
499 PRK13233 nifH nitrogenase redu 82.7 1.8 4E-05 45.6 5.1 85 118-210 117-212 (275)
500 PRK09841 cryptic autophosphory 82.4 3 6.6E-05 50.5 7.4 66 119-185 640-706 (726)
No 1
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-159 Score=1279.80 Aligned_cols=667 Identities=53% Similarity=0.869 Sum_probs=638.5
Q ss_pred CCccEEEEEeecccCccc-------------ccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC
Q 004615 66 RSRRQFSVFAMAAEGRNY-------------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 132 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~-------------~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D 132 (742)
+++|||+|++|.++||+| .+|+|+.|.++||+++.||+|||||+|+++++.|++++|||||||||+|
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 579999999999999886 6788888999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccC
Q 004615 133 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 212 (742)
Q Consensus 133 F~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~ 212 (742)
|+-||+||||+.||||+|+|++.||++||++||+|++++++|+|.|||||||.++++.+++++|+.+|+.+++.+|+|++
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig 196 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIG 196 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHh
Q 004615 213 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 292 (742)
Q Consensus 213 ~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~ 292 (742)
.++.|.|++|++++++++|+++ .|..+...+||+++.+.+.+.|++|+|.+++.||+|.|.|||+..++.++|+.++|+
T Consensus 197 ~e~~f~GvvDlv~~kai~~~g~-~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr 275 (721)
T KOG0465|consen 197 SESNFKGVVDLVNGKAIYWDGE-NGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRR 275 (721)
T ss_pred ccccchhHHhhhhceEEEEcCC-CCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHH
Confidence 9999999999999999999976 466777799999999999999999999999999999999999999999999999999
Q ss_pred hcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCC-CeEEEEEEEEecCCCceE
Q 004615 293 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDE-PFAGLAFKIMSDPFVGSL 371 (742)
Q Consensus 293 ~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~V~k~~~~~~~G~l 371 (742)
.++++.++||+||||++|+|||+|||+|++|||+|.+...+......+..+.+.+.+..++ ||++++||+..+++ |.+
T Consensus 276 ~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-GqL 354 (721)
T KOG0465|consen 276 ATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-GQL 354 (721)
T ss_pred HHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-cce
Confidence 9999999999999999999999999999999999999888766521112223344433444 99999999999999 999
Q ss_pred EEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecC-CCcccccccCCC
Q 004615 372 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDA-DHPILLERMDFP 450 (742)
Q Consensus 372 ~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~-~~~~~l~~i~~~ 450 (742)
+|+|||+|+|++||.|||.++++++|+.+|++||++.+++|+++.|||||++.|+ ++.+|||+++. .....++.|.+|
T Consensus 355 TyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~~~~~~m~si~vP 433 (721)
T KOG0465|consen 355 TYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQNLALSMESIHIP 433 (721)
T ss_pred EEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCccccceeeeeecC
Confidence 9999999999999999999999999999999999999999999999999999999 89999999998 667889999999
Q ss_pred CceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhcCeEEEEeCceeeEEe
Q 004615 451 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 530 (742)
Q Consensus 451 ~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrE 530 (742)
+||++++|+|.+..|.+++.+||.++.+|||+|++..|.|++|++|+|||||||||..+||+||||+++.+|+|+|+|||
T Consensus 434 ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~VayRE 513 (721)
T KOG0465|consen 434 EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKPQVAYRE 513 (721)
T ss_pred CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCceeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccceeeEEEeeccCCCccceEEEEEEeeccCCCC--ceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeE
Q 004615 531 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSG--YEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDV 608 (742)
Q Consensus 531 ti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~--~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v 608 (742)
||+.++++++.||||+||.||||++...++|++.+.+ ++|.+++.|+.+|++|++++++||.++|++|||.|+|+.|+
T Consensus 514 Ti~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghpl~~~ 593 (721)
T KOG0465|consen 514 TITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHPLSNL 593 (721)
T ss_pred hcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCCcccce
Confidence 9999999999999999999999999999999987654 67999999999999999999999999999999999999999
Q ss_pred EEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEE
Q 004615 609 RAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKV 688 (742)
Q Consensus 609 ~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~ 688 (742)
++.|.||.+|.+||++.+|+.|++.||++||.+|+|++|||||.|||++|+||+|.|+++|++|+|.|.+.+..+ +.++
T Consensus 594 r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~-~~~t 672 (721)
T KOG0465|consen 594 RIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSE-DYKT 672 (721)
T ss_pred EEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCC-ceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876 8899
Q ss_pred EEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHH
Q 004615 689 VDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAK 736 (742)
Q Consensus 689 i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~ 736 (742)
|+|.+||.+||||+++|||+|+|+|.|+|+|++|+|+|.++|++++++
T Consensus 673 i~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~vq~~~~~~ 720 (721)
T KOG0465|consen 673 IKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQDQLVHK 720 (721)
T ss_pred EEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999864
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-153 Score=1315.40 Aligned_cols=674 Identities=62% Similarity=1.024 Sum_probs=646.3
Q ss_pred CCCccEEEEEeecccCccc-------------ccceeccCCccCCCcHhHHhhcceEecceEEEEecC-eEEEEEcCCCc
Q 004615 65 PRSRRQFSVFAMAAEGRNY-------------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGH 130 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~-------------~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~-~~inlIDTPGh 130 (742)
.+++|||+|+||++||||| ++|+|++|+++||++++||+|||||+++++++.|++ ++|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3689999999999999986 799999999999999999999999999999999996 99999999999
Q ss_pred cCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEec
Q 004615 131 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 131 ~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~P 210 (742)
+||+.||+||||++||||+||||++||++||+++||||.++++|+|+|||||||.++++..++++++.+|+.++.++|+|
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHH
Q 004615 211 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 290 (742)
Q Consensus 211 i~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l 290 (742)
++.++.|.|++|++.++++.|.. |..+...++|.+..+...++|..++|.++|.||+++|+||+|..++.+++.+++
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~---~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGD---GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcC---CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 99999999999999999999985 445555789999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCce
Q 004615 291 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 370 (742)
Q Consensus 291 ~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~ 370 (742)
++.++.+.++|++|+||++|.|++.|||+|+++||+|.+.+.+.|...+.........+++++|++|+|||+..+++.|.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 99999999999999999999999999999999999999998777654322222333366779999999999999999999
Q ss_pred EEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCCCcccccccCCC
Q 004615 371 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 450 (742)
Q Consensus 371 l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~~~~~l~~i~~~ 450 (742)
++|+|||||+|++||.++|...++++||.+|+.|||++++++++++||||+++.||+++.+|||||+.+.+..++.+.+|
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~~p 403 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESMEFP 403 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988767889999999
Q ss_pred CceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhcCeEEEEeCceeeEEe
Q 004615 451 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 530 (742)
Q Consensus 451 ~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrE 530 (742)
+||++++|+|+++.|.+||.++|++|++|||+|+++.|+||||++|+|||||||||+++||+++||+++.+++|+|+|||
T Consensus 404 ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~YrE 483 (697)
T COG0480 404 EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAYRE 483 (697)
T ss_pred CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEE
Q 004615 531 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRA 610 (742)
Q Consensus 531 ti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v 610 (742)
||++.+...++|+||+||++||+++++.++|++++.++.|.+++.+|.+|++|++++++||++|+++|||+||||+||+|
T Consensus 484 Ti~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~dvkv 563 (697)
T COG0480 484 TIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVVDVKV 563 (697)
T ss_pred eecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceEeeEE
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCC-CCeEEE
Q 004615 611 ALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP-GGLKVV 689 (742)
Q Consensus 611 ~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~-~~~~~i 689 (742)
+|.|++||++||++++|++|+++||++|+++|+|+||||||+|+|++|++|+|+|+++|++|||+|++++..+ +.+.+|
T Consensus 564 ~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i 643 (697)
T COG0480 564 TLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVI 643 (697)
T ss_pred EEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885 356999
Q ss_pred EEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHHhhhh
Q 004615 690 DALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQEVA 741 (742)
Q Consensus 690 ~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~~~~ 741 (742)
+|++|++|||||+++|||+|+|+|+|+|+|+||+++|.+.+++++.+.++.+
T Consensus 644 ~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~a~~ii~~~~~~~ 695 (697)
T COG0480 644 KAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSVAEEIIAKRRKRK 695 (697)
T ss_pred EEEechHHhccchhhhHhhcCCceeEEEEecccEeCCHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999999876543
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=3.6e-137 Score=1209.09 Aligned_cols=673 Identities=65% Similarity=1.063 Sum_probs=638.4
Q ss_pred CCCccEEEEEeecccCcccc-------------cceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc
Q 004615 65 PRSRRQFSVFAMAAEGRNYK-------------IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 131 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~-------------~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~ 131 (742)
.++||||+|+||+++||||+ +|++++|++++|++++|++|||||+++.+++.|++++|||||||||.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 36799999999999999973 34567788999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEecc
Q 004615 132 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 211 (742)
Q Consensus 132 DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi 211 (742)
||..++.++++.+|+||+||||.+|++.||+.+|+++.+.++|+|+||||||+..+++.+++++++++++..+.+.++|+
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipi 166 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPI 166 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHH
Q 004615 212 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 291 (742)
Q Consensus 212 ~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~ 291 (742)
+...+|.|++|++.+..+.|.....+..+...++|.++.+...++|+.|+|.+++.||++||+||+|+.++.+++++.++
T Consensus 167 sa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~ 246 (693)
T PRK00007 167 GAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALR 246 (693)
T ss_pred ccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHH
Confidence 99999999999999999999654457778888899988888999999999999999999999999999999999999999
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceE
Q 004615 292 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 371 (742)
Q Consensus 292 ~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l 371 (742)
+++..+.++||+||||++|.|++.|||+|++++|+|.+++...+...+.......+.|++++|++++|||+.++++.|++
T Consensus 247 ~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i 326 (693)
T PRK00007 247 KATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKL 326 (693)
T ss_pred HHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcE
Confidence 99999999999999999999999999999999999987665432111111123457789999999999999999999999
Q ss_pred EEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCCCcccccccCCCC
Q 004615 372 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPD 451 (742)
Q Consensus 372 ~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~~~~~l~~i~~~~ 451 (742)
+|+|||||+|++||+|+|.++++.++|++|+.++|+++.+++++.|||||++.|++++++||||++.+.+..++++.+|+
T Consensus 327 a~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~~l~~~~~~~ 406 (693)
T PRK00007 327 TFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESMEFPE 406 (693)
T ss_pred EEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCccccCCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999887777888889999
Q ss_pred ceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhcCeEEEEeCceeeEEee
Q 004615 452 PVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRES 531 (742)
Q Consensus 452 Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEt 531 (742)
|+++++|+|.++.|.+||.++|++|++|||+|+|.+|++|||++|+|||||||||+++||+++|++++++++|+|+||||
T Consensus 407 Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~yrET 486 (693)
T PRK00007 407 PVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVAYRET 486 (693)
T ss_pred ceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecCCEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEEE
Q 004615 532 ISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAA 611 (742)
Q Consensus 532 i~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~ 611 (742)
|+++++..++|++|+||++||++|+++++|++++.++.|++++.++.+|++|+++|++||++|+++||||||||+||+|+
T Consensus 487 i~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~ 566 (693)
T PRK00007 487 IRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDVKVT 566 (693)
T ss_pred ccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEE
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEE
Q 004615 612 LVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDA 691 (742)
Q Consensus 612 l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a 691 (742)
|+|+.+|++||++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+|+++|++|||+|.++++.+ +.+.|+|
T Consensus 567 l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~-~~~~i~a 645 (693)
T PRK00007 567 LFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRG-GAKVIRA 645 (693)
T ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccC-CcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765 5789999
Q ss_pred EechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHHh
Q 004615 692 LVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 738 (742)
Q Consensus 692 ~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 738 (742)
.+|++|+|||+++||++|+|+|+|+|+|+||+++|++.++++++++.
T Consensus 646 ~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 692 (693)
T PRK00007 646 EVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKRK 692 (693)
T ss_pred EcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998763
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=5.2e-136 Score=1200.29 Aligned_cols=672 Identities=65% Similarity=1.070 Sum_probs=639.4
Q ss_pred CCCccEEEEEeecccCccccc-------------ceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc
Q 004615 65 PRSRRQFSVFAMAAEGRNYKI-------------GEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 131 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~-------------g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~ 131 (742)
.+++|||+|+||+++||||+. |.+++|++++|++++|++|||||+++.+++.|++++|||||||||.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 367999999999999999843 4457788999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEecc
Q 004615 132 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 211 (742)
Q Consensus 132 DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi 211 (742)
||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+..++++++++++++.++..+.+.++|+
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHH
Q 004615 212 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 291 (742)
Q Consensus 212 ~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~ 291 (742)
+....|.|++|++.++.+.|.....|..+...++|.++.+...++|+.|+|.+++.||++||+||++..++.+++++.++
T Consensus 165 s~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~ 244 (691)
T PRK12739 165 GAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIR 244 (691)
T ss_pred cccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHH
Confidence 99999999999999999999764456677888999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceE
Q 004615 292 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 371 (742)
Q Consensus 292 ~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l 371 (742)
+.+.++.++||+|+||++|.|++.|||+|++++|+|.+++...+.... ......+.|++++|++++|||+.++++.|++
T Consensus 245 ~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~-~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i 323 (691)
T PRK12739 245 KATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPD-TEEEIERPASDDEPFAALAFKIMTDPFVGRL 323 (691)
T ss_pred HHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCC-CCcceeeccCCCCCeEEEEEEeeeCCCCCeE
Confidence 999999999999999999999999999999999999886654432111 1123457789999999999999999999999
Q ss_pred EEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCCCcccccccCCCC
Q 004615 372 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPD 451 (742)
Q Consensus 372 ~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~~~~~l~~i~~~~ 451 (742)
+|+|||||+|++||.|+|.+++++++|++|+.++|+++.+++++.|||||+|.|++++++||||++.+.+..++++.+|+
T Consensus 324 ~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~~~~~ 403 (691)
T PRK12739 324 TFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEFPE 403 (691)
T ss_pred EEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777888899999
Q ss_pred ceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhcCeEEEEeCceeeEEee
Q 004615 452 PVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRES 531 (742)
Q Consensus 452 Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEt 531 (742)
|+++++|+|.++.|.++|.+||++|+++||+|++++|+||||++|+||||||||++++||+++|++++.+++|+|+||||
T Consensus 404 Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~yrEt 483 (691)
T PRK12739 404 PVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAYRET 483 (691)
T ss_pred ceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEEE
Q 004615 532 ISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAA 611 (742)
Q Consensus 532 i~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~ 611 (742)
|++.++..++|++|+||++||++++++++|++++.++.|.+++.+|.+|++|+++|++||+|||++||||||||+||+|+
T Consensus 484 i~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~ 563 (691)
T PRK12739 484 ITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMVDVKAT 563 (691)
T ss_pred cCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEE
Q 004615 612 LVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDA 691 (742)
Q Consensus 612 l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a 691 (742)
|+|+.+|++||++++|++|+++||++|+++|+|+||||||+|||+||++|+|+|+++|++|||+|.++++.+ +..+|+|
T Consensus 564 l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~-~~~~i~a 642 (691)
T PRK12739 564 LYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARG-GAQIVKA 642 (691)
T ss_pred EEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccC-CcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876 5679999
Q ss_pred EechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHHh
Q 004615 692 LVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 738 (742)
Q Consensus 692 ~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 738 (742)
.+|++|+|||+++||++|+|+|+|+|+|+||+++|++.+++|+++..
T Consensus 643 ~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~ii~~~~ 689 (691)
T PRK12739 643 FVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNIAEEIIKKRK 689 (691)
T ss_pred EeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998764
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=4.5e-134 Score=1184.76 Aligned_cols=669 Identities=60% Similarity=0.988 Sum_probs=635.8
Q ss_pred CCCccEEEEEeecccCccccc-------------ceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc
Q 004615 65 PRSRRQFSVFAMAAEGRNYKI-------------GEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 131 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~-------------g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~ 131 (742)
.+++|||+|+||+++||||++ |++++|++++|++++|++|||||+++..++.|++++++|||||||.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 367999999999999999743 4456688999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEecc
Q 004615 132 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 211 (742)
Q Consensus 132 DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi 211 (742)
||..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+++|+||||+..+++++++++|+++++..+.+.++|+
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipi 166 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPI 166 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHH
Q 004615 212 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 291 (742)
Q Consensus 212 ~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~ 291 (742)
+...+|.|++|++.++.++|.+. .++.+...++|+++.+.+.++|+.|+|.+++.||++||+||+|+.++.+++.++++
T Consensus 167 s~~~~~~~~id~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~ 245 (689)
T TIGR00484 167 GAEDNFIGVIDLVEMKAYFFNGD-KGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIR 245 (689)
T ss_pred ccCCCceEEEECccceEEecccC-CCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 99999999999999999999753 57888889999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceE
Q 004615 292 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 371 (742)
Q Consensus 292 ~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l 371 (742)
+++..+.++||+||||++|.|++.|||+|++++|+|.+++...+... +......+.|++++|++|+|||+.++++.|++
T Consensus 246 ~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i 324 (689)
T TIGR00484 246 KGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDP-DTEKEIERKASDDEPFSALAFKVATDPFVGQL 324 (689)
T ss_pred HHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCC-CCCceeeecCCCCCceEEEEEEeeecCCCCeE
Confidence 99999999999999999999999999999999999987654333211 11223457788999999999999999999999
Q ss_pred EEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCCCcccccccCCCC
Q 004615 372 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPD 451 (742)
Q Consensus 372 ~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~~~~~l~~i~~~~ 451 (742)
+|+|||||+|+.||+|+|.+.+++++|++|+.++|+++.+++++.|||||+|.|++++.+||||++.+....++++.+|+
T Consensus 325 ~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~~~~ 404 (689)
T TIGR00484 325 TFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERMEFPE 404 (689)
T ss_pred EEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCccccCCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999888777888889999
Q ss_pred ceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhcCeEEEEeCceeeEEee
Q 004615 452 PVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRES 531 (742)
Q Consensus 452 Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEt 531 (742)
|+++++|+|.++.|.+||.++|++|+++||+|+|.+|++|||++|+|||||||||+++||+++||+++++++|+|+||||
T Consensus 405 Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~yrEt 484 (689)
T TIGR00484 405 PVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVAYRET 484 (689)
T ss_pred ceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEEE
Q 004615 532 ISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAA 611 (742)
Q Consensus 532 i~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~ 611 (742)
|+++++..++|++|+||++||++|+++++|++++ |+.|.+++.+|.+|++|++||++||+|||++||||||||+||+|+
T Consensus 485 i~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~-g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~~v~v~ 563 (689)
T TIGR00484 485 IRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPK-GYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVVDIKAT 563 (689)
T ss_pred ccCccccccccccccCCCCceEEEEEEEEECCCC-CcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCceeeEEEE
Confidence 9999888999999999999999999999999864 999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEE
Q 004615 612 LVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDA 691 (742)
Q Consensus 612 l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a 691 (742)
|+|+++|++||++++|++|+++||++|+++|+|+||||||+|+|+||++|+|+|+++|++|||+|.++++.+ +.+.|+|
T Consensus 564 l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~-~~~~I~a 642 (689)
T TIGR00484 564 LFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARG-NVQKIKA 642 (689)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccC-CcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765 6799999
Q ss_pred EechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHHHH
Q 004615 692 LVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKE 737 (742)
Q Consensus 692 ~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~ 737 (742)
++|++|+|||+++||++|+|+|+|+|+|+||++||++++++||+++
T Consensus 643 ~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~ 688 (689)
T TIGR00484 643 EVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEKR 688 (689)
T ss_pred EeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999875
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=1.1e-130 Score=1159.15 Aligned_cols=668 Identities=51% Similarity=0.892 Sum_probs=633.4
Q ss_pred CCccEEEEEeecccCccccc-------------ceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC
Q 004615 66 RSRRQFSVFAMAAEGRNYKI-------------GEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 132 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~-------------g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D 132 (742)
+++|||+|+||+++||||++ |+++.|++++|++++|++||+||.++..++.|+++++||||||||.|
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 57899999999999999844 45566889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccC
Q 004615 133 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 212 (742)
Q Consensus 133 F~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~ 212 (742)
|..++.++++.+|++|+|+|+.+|++.||+.+|+++.+.++|+++|+||+|+.++++.++++++++.|+..+.++|+|++
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~~ 165 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIG 165 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHh
Q 004615 213 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 292 (742)
Q Consensus 213 ~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~ 292 (742)
.+..|.|++|++.++++.|.....+..+...++|..+.+.+.+++..|+|.+++.||+++|+||++..++.++++..+++
T Consensus 166 ~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~ 245 (687)
T PRK13351 166 SEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLRE 245 (687)
T ss_pred cCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 99999999999999999997654566777889999999999999999999999999999999999999999999999999
Q ss_pred hcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEE
Q 004615 293 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 372 (742)
Q Consensus 293 ~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~ 372 (742)
++..+.++|||||||++|.|++.|||+|++++|+|.+++...... +........|++++|++++|||+.++++.|+++
T Consensus 246 ~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~ 323 (687)
T PRK13351 246 GTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--DNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLT 323 (687)
T ss_pred HHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC--CCCCceeecCCCCCCeEEEEEEeeecCCCceEE
Confidence 999999999999999999999999999999999998765433211 111123467889999999999999999999999
Q ss_pred EEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCCCcccccccCCCCc
Q 004615 373 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDP 452 (742)
Q Consensus 373 ~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~~~~~l~~i~~~~P 452 (742)
|+|||||+|++||+|++.++++.+++++|+.++|+++.+++++.||||+++.|++++.+||||++......++++.+|+|
T Consensus 324 ~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~~~~p 403 (687)
T PRK13351 324 YLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTFPEP 403 (687)
T ss_pred EEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCCCCCc
Confidence 99999999999999999999989999999999999999999999999999999999999999998877777788889999
Q ss_pred eEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhcCeEEEEeCceeeEEeee
Q 004615 453 VIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESI 532 (742)
Q Consensus 453 vv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEti 532 (742)
+++++|+|.+++|.++|.+||++|++|||+|++++|+||||++|+||||||||++++||+++|++++++++|+|+|||||
T Consensus 404 v~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y~Eti 483 (687)
T PRK13351 404 VVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAYRETI 483 (687)
T ss_pred cEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEEEE
Q 004615 533 SKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAAL 612 (742)
Q Consensus 533 ~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l 612 (742)
++.++..++|++|+||++||++|+++++|+++++|+.|.+.+.++.+|++|+++|++||++||++||||||||+||+|+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l 563 (687)
T PRK13351 484 RKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVTDLRVTV 563 (687)
T ss_pred cccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCceeeEEEEE
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEE
Q 004615 613 VDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDAL 692 (742)
Q Consensus 613 ~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~ 692 (742)
+|+.+|+++|++++|++|+++||++|+++|+|+||||||+|||+||++|+|+|+++|++|||+|.++++.+++...|+|.
T Consensus 564 ~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~a~ 643 (687)
T PRK13351 564 LDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAE 643 (687)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866444459999
Q ss_pred echhhhhchHHHhhccCCceEEEEEEeCccccCCchHHHHHHH
Q 004615 693 VPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAA 735 (742)
Q Consensus 693 ~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 735 (742)
+|++||+||+++||++|+|+|+|+|+|+||+++|++++++|+.
T Consensus 644 vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 686 (687)
T PRK13351 644 APLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQKKVGS 686 (687)
T ss_pred ECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999875
No 7
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=3e-123 Score=1094.46 Aligned_cols=654 Identities=57% Similarity=0.935 Sum_probs=619.9
Q ss_pred EeecccCccccc-------------ceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHH
Q 004615 74 FAMAAEGRNYKI-------------GEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 140 (742)
Q Consensus 74 iGh~~~Gk~~~~-------------g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~a 140 (742)
+||+++||||+. |+++.|++++|+++.|++|||||+++..++.|+++.++|||||||.+|..++.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999843 3456678999999999999999999999999999999999999999999999999
Q ss_pred HHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCcceee
Q 004615 141 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 220 (742)
Q Consensus 141 l~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~ 220 (742)
++.+|++|+|||+.+|++.|+..+|+++...++|.++|+||+|+..+++.++++++++.++..+.+.++|+..+..|.|+
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcce
Q 004615 221 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFV 300 (742)
Q Consensus 221 idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~ 300 (742)
+|++.++.+.|+ .+..+...++|+...+...++|+.|+|.+++.||+++++||++..++.++++..+++++..+.++
T Consensus 161 id~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 161 VDLLSMKAYRYD---EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred EECccceEEEec---CCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 999999999998 25667777888888888889999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeE
Q 004615 301 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGT 380 (742)
Q Consensus 301 Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~ 380 (742)
||++|||++|.|++.|||+|++++|+|.+++...+.. ........|++++|++++|||++++++.|+++|+|||||+
T Consensus 238 Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~---~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~ 314 (668)
T PRK12740 238 PVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGED---GEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGT 314 (668)
T ss_pred EEEeccccCCccHHHHHHHHHHHCCChhhcccccCCC---CccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeE
Confidence 9999999999999999999999999998755432111 1112335688899999999999999999999999999999
Q ss_pred ecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCCCcccccccCCCCceEEEEEEe
Q 004615 381 LSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 460 (742)
Q Consensus 381 L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~~~~~l~~i~~~~Pvv~~~Iep 460 (742)
|++||+|++.++++.++|++|+.++|++..+++++.||||+++.|++++.+||||++...+..++++.+++|+++++|+|
T Consensus 315 L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~p 394 (668)
T PRK12740 315 LKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEP 394 (668)
T ss_pred EcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEEE
Confidence 99999999999888899999999999999999999999999999999999999999887777888899999999999999
Q ss_pred CCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhcCeEEEEeCceeeEEeeeeccceeeE
Q 004615 461 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKY 540 (742)
Q Consensus 461 ~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~ 540 (742)
.+++|.++|.++|++|+++||+|++..|++|||++|+|+||||||++++||+++|++++.+++|+|+|||||.++++..+
T Consensus 395 ~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~~ 474 (668)
T PRK12740 395 KDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGHG 474 (668)
T ss_pred CCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEEEEEeccccCC
Q 004615 541 VHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDV 620 (742)
Q Consensus 541 ~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~~ 620 (742)
+|++++||++||++|+++++|++++.++.|.+++.++.+|++|+++|++||++|+++||||||||+||+|+|+++.+|.+
T Consensus 475 ~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~ 554 (668)
T PRK12740 475 RHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSV 554 (668)
T ss_pred eeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhc
Q 004615 621 DSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQ 700 (742)
Q Consensus 621 ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~g 700 (742)
||++++|+.|+++||++|+++|+|+||||||+|||++|++|+|+|+++|++|||+|.++++.+++ ++|+|++|++|++|
T Consensus 555 ~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~-~~i~a~~P~~e~~g 633 (668)
T PRK12740 555 DSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGG-DVVRAEVPLAEMFG 633 (668)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCC-EEEEEEcCHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999977644 99999999999999
Q ss_pred hHHHhhccCCceEEEEEEeCccccCCchHHHHHH
Q 004615 701 YVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLA 734 (742)
Q Consensus 701 y~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~ 734 (742)
|+++||++|+|+|+|+++|+||+++|++++++++
T Consensus 634 ~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~~~~~~ 667 (668)
T PRK12740 634 YATDLRSLTQGRGSFSMEFSHYEEVPGNVAEKVI 667 (668)
T ss_pred hHHHHHHhcCCeEEEEEEecccccCCHHHHHHHh
Confidence 9999999999999999999999999999888876
No 8
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=1.9e-121 Score=1092.58 Aligned_cols=652 Identities=28% Similarity=0.396 Sum_probs=561.7
Q ss_pred CCCccEEEEEeecccCccccccee-----------ccCCccCCCcHhHHhhcceEecceEEEEec---------------
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEV-----------HEGTATMDWMEQEQERGITITSAATTTYWN--------------- 118 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v-----------~~g~~~~D~~~~E~erGITi~s~~~~~~~~--------------- 118 (742)
++++|||+|+||++|||||+++.+ ..+++++|++++|++|||||+++.+++.|.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 468999999999999999966654 123467999999999999999999999994
Q ss_pred -CeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC-------C----
Q 004615 119 -KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL-------G---- 186 (742)
Q Consensus 119 -~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~-------~---- 186 (742)
+++|||||||||.||..++.+|++.+|+||+||||.+|++.||+++|+++.++++|+|+||||||+. +
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~ 175 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 3
Q ss_pred CChHHHHHHHHH---HhCCcce-EEEe-ccCC----------------------CCcceeeeecccceEE---EecCCCC
Q 004615 187 ANFFRTRDMIVT---NLGAKPL-VVQL-PVGA----------------------EDNFKGVVDLVKMKAI---IWSGEEL 236 (742)
Q Consensus 187 ~~~~~~~~~i~~---~l~~~~~-~~~~-Pi~~----------------------~~~f~g~idl~~~~~~---~~~~~~~ 236 (742)
+++++++++++. .++.... .+++ |++. ..+|.+.+|++..+.| +|++.
T Consensus 176 ~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~-- 253 (843)
T PLN00116 176 QTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA-- 253 (843)
T ss_pred HHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCC--
Confidence 678999999982 2221111 2233 5444 3345555566655555 56432
Q ss_pred CceeEeec--Cchh---HHHHHHHHHHHHHHHHHccCHHHHHHHhcC--CCCCHHHHHHHHHhhcccCcceeeeeccccC
Q 004615 237 GAKFAYED--IPAN---LQKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIKKLIRKGTIAGSFVPVLCGSAFK 309 (742)
Q Consensus 237 g~~~~~~~--i~~~---~~~~~~~~r~~l~e~~~e~dd~lle~yl~~--~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~ 309 (742)
+..+...+ .+.. ....+.+++..|+|.+++.||++|++||++ ..++.++++. +++.+.+..+.|+|++|
T Consensus 254 ~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~~~s--- 329 (843)
T PLN00116 254 TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWLPAS--- 329 (843)
T ss_pred CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhcCCh---
Confidence 44444444 3322 222334689999999999999999999997 5799999988 99999999999999976
Q ss_pred CCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEEecCCCce-EEEEEEEeeEecC
Q 004615 310 NKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAGTLSA 383 (742)
Q Consensus 310 ~~gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~-l~~~RV~sG~L~~ 383 (742)
+.|||+|++++|+|.+++..+.. +...........|++++|++++|||+..+++.|. ++|+|||||+|++
T Consensus 330 ----~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~ 405 (843)
T PLN00116 330 ----DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVAT 405 (843)
T ss_pred ----HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecC
Confidence 78999999999999865432110 1011222356788999999999999999888887 9999999999999
Q ss_pred CCEEE----eCCCCce-----EecceEEEeecCceeecccccCCCEEEEcCCCcccc-CceeecCC--CcccccccCCC-
Q 004615 384 GSYVL----NANKGKK-----ERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT-GETLCDAD--HPILLERMDFP- 450 (742)
Q Consensus 384 gd~v~----~~~~~~~-----~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~t-GdTL~~~~--~~~~l~~i~~~- 450 (742)
||.|+ |...++. ++|++||.++|++++++++++|||||+|.|++++.+ |||||+.. .+..++++.+|
T Consensus 406 g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~ 485 (843)
T PLN00116 406 GMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSV 485 (843)
T ss_pred CCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCC
Confidence 99998 4444433 589999999999999999999999999999998655 99999876 56778889998
Q ss_pred CceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhc--CeEEEEeCceeeE
Q 004615 451 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF--KVEANVGAPQVNY 528 (742)
Q Consensus 451 ~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~--~v~v~~~~p~V~y 528 (742)
+|+++++|+|.+++|.++|.+||++|++|||+|++.. +||||++|+||||||||+|++||+++| |+++++++|+|+|
T Consensus 486 ~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~y 564 (843)
T PLN00116 486 SPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSF 564 (843)
T ss_pred CceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEE
Confidence 9999999999999999999999999999999999865 899999999999999999999999999 9999999999999
Q ss_pred EeeeeccceeeEEEeeccCCCccceEEEEEEeeccCC-------------------------------------------
Q 004615 529 RESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG------------------------------------------- 565 (742)
Q Consensus 529 rEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~------------------------------------------- 565 (742)
||||.++++..+++ +| .++|++|+++++|++++
T Consensus 565 rETI~~~~~~~~~~-~~---~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~ 640 (843)
T PLN00116 565 RETVLEKSCRTVMS-KS---PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPE 640 (843)
T ss_pred EecccccccCcEEE-ec---CCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCC
Confidence 99999998877773 44 56789999999998764
Q ss_pred --CCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEEEEEeccccC--CCCCHHHHHHHHHHHHHHHHHh
Q 004615 566 --SGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVLAFQLAARGAFREGMRK 641 (742)
Q Consensus 566 --~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~--~ds~~~~f~~a~~~a~~~a~~~ 641 (742)
.++.|++++.|..+.++++++|++||++||++||||||||+||+|+|.|+.+|+ .++.+.+|++|+++||++|+++
T Consensus 641 ~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~ 720 (843)
T PLN00116 641 TTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLT 720 (843)
T ss_pred CCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHh
Confidence 128899998887777788889999999999999999999999999999999998 5566789999999999999999
Q ss_pred cCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCC-eEEEEEEechhhhhchHHHhhccCCceEEEEEEeC
Q 004615 642 AGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGG-LKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLA 720 (742)
Q Consensus 642 a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~-~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~ 720 (742)
|+|+||||||+|||+||++++|+|+++|++|||+|.++++.+++ .++|+|++|++|||||+++||++|+|+|+|+|+|+
T Consensus 721 a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~ 800 (843)
T PLN00116 721 AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFD 800 (843)
T ss_pred CCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEec
Confidence 99999999999999999999999999999999999999886643 48999999999999999999999999999999999
Q ss_pred ccccCCchHHH
Q 004615 721 KFDVVPQHIQN 731 (742)
Q Consensus 721 ~y~~v~~~~~~ 731 (742)
||++||+++.+
T Consensus 801 ~y~~v~~dp~~ 811 (843)
T PLN00116 801 HWDMMSSDPLE 811 (843)
T ss_pred eeEECCCCCCC
Confidence 99999987754
No 9
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=1.1e-119 Score=1075.22 Aligned_cols=648 Identities=29% Similarity=0.465 Sum_probs=566.2
Q ss_pred CCCccEEEEEeecccCccccccee----------ccCC-ccCCCcHhHHhhcceEecceEEEEec----------CeEEE
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEV----------HEGT-ATMDWMEQEQERGITITSAATTTYWN----------KHRIN 123 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v----------~~g~-~~~D~~~~E~erGITi~s~~~~~~~~----------~~~in 123 (742)
.+++|||+|+||++|||||+.+.+ ..|+ +++|++++|++|||||+++.+++.|. +++||
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 367999999999999999965544 2344 55999999999999999999999997 78999
Q ss_pred EEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC----C-------CChHHH
Q 004615 124 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL----G-------ANFFRT 192 (742)
Q Consensus 124 lIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~----~-------~~~~~~ 192 (742)
|||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++.+.++|+|+|+||||+. + ++++++
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~i 175 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKT 175 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 4 789999
Q ss_pred HHHHHHHhC-----------CcceEEEeccCCCC--------ccee--------eeecccceEE---EecCCCCCceeEe
Q 004615 193 RDMIVTNLG-----------AKPLVVQLPVGAED--------NFKG--------VVDLVKMKAI---IWSGEELGAKFAY 242 (742)
Q Consensus 193 ~~~i~~~l~-----------~~~~~~~~Pi~~~~--------~f~g--------~idl~~~~~~---~~~~~~~g~~~~~ 242 (742)
++++++.++ ..|.+.|+|++.+. .|.| .+|.+.+..| +|++ .+..+..
T Consensus 176 i~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~--~~~~~~~ 253 (836)
T PTZ00416 176 IENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDA--KTKKWIK 253 (836)
T ss_pred HHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccC--CCCEEEe
Confidence 999998775 37888999997765 2443 3455555444 5543 2444444
Q ss_pred ec-------CchhHHHHHHHHHHHHHHHHHccCHHHHHHHhc--CCCCCHHHH--HH-HHHhhcccCcceeeeeccccCC
Q 004615 243 ED-------IPANLQKMAQEYRSQMIETIVELDDEAMESYLE--GNEPDEETI--KK-LIRKGTIAGSFVPVLCGSAFKN 310 (742)
Q Consensus 243 ~~-------i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~--~~~~~~~~l--~~-~l~~~~~~~~~~Pv~~~Sa~~~ 310 (742)
.+ +|..+.+.+.+.+..|+|.+++.||++|++||+ +..++++++ .. .+.+.+. +.|+|+
T Consensus 254 ~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv-------- 324 (836)
T PTZ00416 254 DETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA-------- 324 (836)
T ss_pred ccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch--------
Confidence 43 344566788899999999999999999999999 678888884 23 5666666 799998
Q ss_pred CChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEEecCCCce-EEEEEEEeeEecCC
Q 004615 311 KGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAGTLSAG 384 (742)
Q Consensus 311 ~gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~-l~~~RV~sG~L~~g 384 (742)
++.|||+|++++|+|.+++..+.. ...++.....+.|++++|++++|||+.++++.|. ++|+|||||+|+.|
T Consensus 325 --~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g 402 (836)
T PTZ00416 325 --ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATG 402 (836)
T ss_pred --HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCC
Confidence 689999999999999875543110 1111222346788999999999999999999998 89999999999999
Q ss_pred CEEE----eCCCCceE-----ecceEEEeecCceeecccccCCCEEEEcCCCc--cccCceeecCCCcccccccCCC-Cc
Q 004615 385 SYVL----NANKGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD--TITGETLCDADHPILLERMDFP-DP 452 (742)
Q Consensus 385 d~v~----~~~~~~~~-----kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~--~~tGdTL~~~~~~~~l~~i~~~-~P 452 (742)
|.|| +...+.++ +|++||.++|++..++++|+|||||+|.|+++ +++| ||++...+..+.++.++ +|
T Consensus 403 ~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~~~P 481 (836)
T PTZ00416 403 QKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSP 481 (836)
T ss_pred CEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccCCCC
Confidence 9999 44444444 59999999999999999999999999999998 7899 99988777778888886 99
Q ss_pred eEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhc-CeEEEEeCceeeEEee
Q 004615 453 VIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQVNYRES 531 (742)
Q Consensus 453 vv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~~p~V~yrEt 531 (742)
+++++|+|.+++|.++|.++|++|.+|||+|+++. ++|||++|+||||+|||+|++||+++| ++++.+++|+|+||||
T Consensus 482 v~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrET 560 (836)
T PTZ00416 482 VVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRET 560 (836)
T ss_pred eEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEE
Confidence 99999999999999999999999999999999965 899999999999999999999999999 9999999999999999
Q ss_pred eeccceeeEEEeeccCCCccceEEEEEEeeccCC------------------------CCce-----------EEecccC
Q 004615 532 ISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG------------------------SGYE-----------FKSEIKG 576 (742)
Q Consensus 532 i~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~------------------------~~~~-----------f~~~~~~ 576 (742)
|++.++..++|++|++++ +|+++++|++++ .++. |..++.|
T Consensus 561 I~~~s~~~~~~~~~~~~~----~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g 636 (836)
T PTZ00416 561 VTEESSQTCLSKSPNKHN----RLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKG 636 (836)
T ss_pred ecccccceEEEECCCCCe----eEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCC
Confidence 999999999999997753 899999999765 1444 5666677
Q ss_pred CCC------CcccHH----HHHHHHHHHHHcCcccCCCeeeEEEEEEeccccC--CCCCHHHHHHHHHHHHHHHHHhcCC
Q 004615 577 GAV------PKEYIP----GVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVLAFQLAARGAFREGMRKAGP 644 (742)
Q Consensus 577 ~~i------~~~~~~----~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~--~ds~~~~f~~a~~~a~~~a~~~a~~ 644 (742)
+.+ |++|++ +|++||+||+++||||||||+||+|+|+|+++|+ .++.+++|+.|+++||++|+++|+|
T Consensus 637 ~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p 716 (836)
T PTZ00416 637 PNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASP 716 (836)
T ss_pred CcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCC
Confidence 766 666666 9999999999999999999999999999999998 7888999999999999999999999
Q ss_pred eeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCC-eEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccc
Q 004615 645 KMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGG-LKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFD 723 (742)
Q Consensus 645 ~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~-~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~ 723 (742)
+||||||+|+|+||++++|+|+++|++|||+|+++++.+++ .++|+|++|++|||||+++||++|+|+|+|+|+|+||+
T Consensus 717 ~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~ 796 (836)
T PTZ00416 717 RLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQ 796 (836)
T ss_pred EEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEE
Confidence 99999999999999999999999999999999999987655 38999999999999999999999999999999999999
Q ss_pred cCCchHHH
Q 004615 724 VVPQHIQN 731 (742)
Q Consensus 724 ~v~~~~~~ 731 (742)
+||+++.+
T Consensus 797 ~vp~dp~~ 804 (836)
T PTZ00416 797 VVPGDPLE 804 (836)
T ss_pred ECCCCCCC
Confidence 99988743
No 10
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=6.5e-117 Score=1040.43 Aligned_cols=623 Identities=31% Similarity=0.462 Sum_probs=545.6
Q ss_pred CCCccEEEEEeecccCcccccceec-----------cCCccCCCcHhHHhhcceEecceEE----EEecCeEEEEEcCCC
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEVH-----------EGTATMDWMEQEQERGITITSAATT----TYWNKHRINIIDTPG 129 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v~-----------~g~~~~D~~~~E~erGITi~s~~~~----~~~~~~~inlIDTPG 129 (742)
.+++|||+++||+++||||+.+++- .+++++|+.++|++||+||+++.++ +.|+++++|||||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 3578999999999999999777652 2346799999999999999999877 667899999999999
Q ss_pred ccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEe
Q 004615 130 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 209 (742)
Q Consensus 130 h~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~ 209 (742)
|.||..++.++++.+|++|+|+|+.+|++.||+.+|+++.+.++|+++|+||||+..++++.++++++++|+..+..++.
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~ 175 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNK 175 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999775544433
Q ss_pred ccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhc---------CCC
Q 004615 210 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLE---------GNE 280 (742)
Q Consensus 210 Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~---------~~~ 280 (742)
++... ++++ ++..+++..++.++.+++.|++ +..
T Consensus 176 ~~~~~------------------------------~~~~-------~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~ 218 (720)
T TIGR00490 176 LIKAM------------------------------APEE-------FRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTG 218 (720)
T ss_pred hhhcc------------------------------CCHH-------HhhceEechhhCCHHHHhhhhcccccchhHhhcC
Confidence 32110 0110 0111233444556666666665 445
Q ss_pred CCHHHHHHHHHhhcccC--cceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCC
Q 004615 281 PDEETIKKLIRKGTIAG--SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDE 353 (742)
Q Consensus 281 ~~~~~l~~~l~~~~~~~--~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 353 (742)
++.+++.+.+....... .++|+ ++.|||+|++++|+|.+++..+.. ..++........|++++
T Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 288 (720)
T TIGR00490 219 IGFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKG 288 (720)
T ss_pred CCHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCC
Confidence 56666666665544333 57888 479999999999999875432210 11111223457889999
Q ss_pred CeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCc
Q 004615 354 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 433 (742)
Q Consensus 354 p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGd 433 (742)
|++++|||+.++++.|+++|+|||||+|++||.|++.++++.++|++|+.++|.+.+++++|.|||||+|.|++++.+||
T Consensus 289 pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gd 368 (720)
T TIGR00490 289 PLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGE 368 (720)
T ss_pred CeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCc-cccccc-CCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHH
Q 004615 434 TLCDADHP-ILLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRL 511 (742)
Q Consensus 434 TL~~~~~~-~~l~~i-~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL 511 (742)
|||+.+.+ ..++++ .+|+|+++++|+|.+++|.++|.++|++|++|||+|++++|+||||++|+||||||||++++||
T Consensus 369 tL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL 448 (720)
T TIGR00490 369 TICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKI 448 (720)
T ss_pred eeecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHH
Confidence 99987654 345666 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCeEEEEeCceeeEEeeeeccce-eeEEEeeccCCCccceEEEEEEeeccCC-------------------------
Q 004615 512 KREFKVEANVGAPQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEAG------------------------- 565 (742)
Q Consensus 512 ~~~~~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~gg~~~~~~v~~~~~P~~~~------------------------- 565 (742)
+++||+++.+++|+|+|||||++.++ .+++| .++|++|+++++|++++
T Consensus 449 ~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 522 (720)
T TIGR00490 449 REDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLI 522 (720)
T ss_pred HHHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHH
Confidence 99999999999999999999999887 55554 24789999999999887
Q ss_pred ----------------CCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEEEEEeccccC--CCCCHHHH
Q 004615 566 ----------------SGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVLAF 627 (742)
Q Consensus 566 ----------------~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~--~ds~~~~f 627 (742)
.++.|++++.||.+|++|++||++||+||+++||||||||+||+|+|+|+++|+ +||++++|
T Consensus 523 ~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f 602 (720)
T TIGR00490 523 EAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQV 602 (720)
T ss_pred hcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchH
Confidence 789999999999999999999999999999999999999999999999999995 88999999
Q ss_pred HHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHHhhc
Q 004615 628 QLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRG 707 (742)
Q Consensus 628 ~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs 707 (742)
++|+++||++|+++|+|+||||||+|||+||++|+|+|+++|++|||+|.+++..+ +.++|+|++|++|||||+++||+
T Consensus 603 ~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~-~~~~I~A~vP~~e~fgy~~~Lrs 681 (720)
T TIGR00490 603 IPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEG-DMVTIIAKAPVAEMFGFAGAIRG 681 (720)
T ss_pred HHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCC-CcEEEEEEEehHHhcCCcHHHHh
Confidence 99999999999999999999999999999999999999999999999999987654 67999999999999999999999
Q ss_pred cCCceEEEEEEeCccccCCchHHHHHHHHHhhhh
Q 004615 708 MTKGRASYIMQLAKFDVVPQHIQNQLAAKEQEVA 741 (742)
Q Consensus 708 ~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~~~~ 741 (742)
+|+|+|+|+|+|+||+++|++.+++++.+.++.|
T Consensus 682 ~T~G~a~~~~~f~~y~~vp~~~~~~ii~~~r~rk 715 (720)
T TIGR00490 682 ATSGRCLWSTEHAGFELVPQNLQQEFVMEVRKRK 715 (720)
T ss_pred hCCCCceEEEEecccccCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999877654
No 11
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-119 Score=923.08 Aligned_cols=659 Identities=34% Similarity=0.562 Sum_probs=591.4
Q ss_pred CCCccEEEEEeecccCccc-------------ccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc
Q 004615 65 PRSRRQFSVFAMAAEGRNY-------------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 131 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~-------------~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~ 131 (742)
..++|||+|++|+++||+| ..|.|++|+|++|++..||||||||+|++++|.|++|+|||||||||+
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 3789999999999999986 689999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEecc
Q 004615 132 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 211 (742)
Q Consensus 132 DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi 211 (742)
||.-||+|++|+.||++.|+|+..||++||.++|||+.++++|.++||||||+..++|+..+++++++||.+++.+|+|+
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi 193 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPI 193 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc-eeeeecccceEEEec-CCCCCceeEeecC----chhHHHHHHHHHHHHHHHHHccCHHHHHHHhcC-----CC
Q 004615 212 GAEDNF-KGVVDLVKMKAIIWS-GEELGAKFAYEDI----PANLQKMAQEYRSQMIETIVELDDEAMESYLEG-----NE 280 (742)
Q Consensus 212 ~~~~~f-~g~idl~~~~~~~~~-~~~~g~~~~~~~i----~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~-----~~ 280 (742)
++...| +|++|++..+.+.|. .+++|..|...++ .+++.+...+++..|+|++|+.|+++.++||+. +.
T Consensus 194 ~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~ 273 (753)
T KOG0464|consen 194 GEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDK 273 (753)
T ss_pred cccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccc
Confidence 999999 799999998888885 3446777765553 356777788899999999999999999999974 56
Q ss_pred CCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEE
Q 004615 281 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 360 (742)
Q Consensus 281 ~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 360 (742)
++.++++..+++.+......||+||||.+|.|+++|||++.-|+|+|.+++.... .=.+..++++.|
T Consensus 274 i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyefl-------------qwykddlcalaf 340 (753)
T KOG0464|consen 274 IDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFL-------------QWYKDDLCALAF 340 (753)
T ss_pred cCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHH-------------hhhhhhHHHHhh
Confidence 8899999999999999999999999999999999999999999999998653211 012567899999
Q ss_pred EEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCC-
Q 004615 361 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD- 439 (742)
Q Consensus 361 k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~- 439 (742)
|+.+|+.+|.++|.|+|||+++.+-.++|.+...++.+.+++...+++..+|+++.||+|...+||+.+.||||+..++
T Consensus 341 kvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivaska 420 (753)
T KOG0464|consen 341 KVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASKA 420 (753)
T ss_pred hhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEecch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997432
Q ss_pred -----------------------CcccccccCCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEE
Q 004615 440 -----------------------HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVI 496 (742)
Q Consensus 440 -----------------------~~~~l~~i~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il 496 (742)
+...+.++++|.|||++.|||.+-...+.+..||+.|.+||||++++.|++|||+++
T Consensus 421 sa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil 500 (753)
T KOG0464|consen 421 SAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTIL 500 (753)
T ss_pred hHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEE
Confidence 234578899999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHHHHHHHHHhhcCeEEEEeCceeeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCC-----ceEE
Q 004615 497 EGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSG-----YEFK 571 (742)
Q Consensus 497 ~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~-----~~f~ 571 (742)
.||||||+|++.+|++|+||+++.+++.+|+|||+|.+......+..+..|.+.+..-|.+...|.+..+- ++|+
T Consensus 501 ~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~kkiefe 580 (753)
T KOG0464|consen 501 CGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPFKKIEFE 580 (753)
T ss_pred eccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccceeEEee
Confidence 99999999999999999999999999999999999998876655555555555444444444444333332 2333
Q ss_pred --ecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeec
Q 004615 572 --SEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEP 649 (742)
Q Consensus 572 --~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEP 649 (742)
.....| +.+--+.||+.|+..||.+|||+|+|+.+|+++|+..-.|....++.-+..++++|+.+|+.+|.-.|+||
T Consensus 581 ~~es~n~~-~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~l~ep 659 (753)
T KOG0464|consen 581 LAESANEG-LLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQLLEP 659 (753)
T ss_pred ccccccch-hhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhHHHhhh
Confidence 121122 22334899999999999999999999999999999999999999999899999999999999999999999
Q ss_pred eeEEEEEeCC-cchHHHHHHHhcCCceecccccCCCCe-EEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCc
Q 004615 650 IMKVEVVTPE-EHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQ 727 (742)
Q Consensus 650 i~~~eI~~p~-~~~g~V~~~L~~rrg~i~~~~~~~~~~-~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~~ 727 (742)
+|+++|.+-. +++..|+.+|.+|||++.+++..+.+. ..|.|.+|++|+.||+..||++|+|.|.|.++|++|+.|.+
T Consensus 660 lm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn~ 739 (753)
T KOG0464|consen 660 LMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMNE 739 (753)
T ss_pred hhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcCh
Confidence 9999999865 999999999999999999998766333 67999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 004615 728 HIQNQLAAKE 737 (742)
Q Consensus 728 ~~~~~~~~~~ 737 (742)
+.+.+++++.
T Consensus 740 ~dk~~il~kr 749 (753)
T KOG0464|consen 740 HDKMEILKKR 749 (753)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 12
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=2.8e-116 Score=1037.88 Aligned_cols=621 Identities=31% Similarity=0.483 Sum_probs=538.1
Q ss_pred CCCccEEEEEeecccCccccccee-----------ccCCccCCCcHhHHhhcceEecceEEEEe----cCeEEEEEcCCC
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEV-----------HEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDTPG 129 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v-----------~~g~~~~D~~~~E~erGITi~s~~~~~~~----~~~~inlIDTPG 129 (742)
.+++|||+|+||++|||||+.+.+ ..+++++|++++|++|||||+++.+++.| ++++||||||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 467999999999999999966544 12357899999999999999999999998 589999999999
Q ss_pred ccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEe
Q 004615 130 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 209 (742)
Q Consensus 130 h~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~ 209 (742)
|.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+||||||+..++++..+++++++++...
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~----- 171 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKII----- 171 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999988888888777765411
Q ss_pred ccCCCCcceeeeecccceEE----E---------ecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHh
Q 004615 210 PVGAEDNFKGVVDLVKMKAI----I---------WSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 276 (742)
Q Consensus 210 Pi~~~~~f~g~idl~~~~~~----~---------~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl 276 (742)
..|+++++.+.+..+ . |.+...+|.+. +..+.+..+++ +++++.|+
T Consensus 172 -----~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~---------------~~~~~~~~~~~-~~l~e~~~ 230 (731)
T PRK07560 172 -----KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAIS---------------VPMMQKTGIKF-KDIIDYYE 230 (731)
T ss_pred -----HHHHHHHHHhhhhhhhcceeecCCCCcEeeeeccccccee---------------HHHHHHhCCCH-HHHHHHHh
Confidence 223334443332221 1 22222233222 23445555666 67889886
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCC
Q 004615 277 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASD 351 (742)
Q Consensus 277 ~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~ 351 (742)
++ +.+++. .++|++ +.|||+|++++|+|.+++..+.. ...+........|++
T Consensus 231 ~~---~~~~l~----------~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 287 (731)
T PRK07560 231 KG---KQKELA----------EKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDP 287 (731)
T ss_pred cC---CHHHHH----------hhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCC
Confidence 54 234442 237885 78999999999999875542211 111111234567899
Q ss_pred CCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCcccc
Q 004615 352 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 431 (742)
Q Consensus 352 ~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~t 431 (742)
++|++++|||+.++++.|+++|+|||||+|++||.|++.+.+.+++|++|+.++|++..+++++.|||||+|.|++++.+
T Consensus 288 ~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~ 367 (731)
T PRK07560 288 NGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARA 367 (731)
T ss_pred CCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEccccccc
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CceeecCCCccccccc-CCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHH
Q 004615 432 GETLCDADHPILLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDR 510 (742)
Q Consensus 432 GdTL~~~~~~~~l~~i-~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~r 510 (742)
||||++.....+++++ .+|+|+++++|+|.++.|.+||.++|++|++|||+|++..|++|||++|+||||||||++++|
T Consensus 368 GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~r 447 (731)
T PRK07560 368 GETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYR 447 (731)
T ss_pred CCEEeCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHH
Confidence 9999988777778886 488999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCeEEEEeCceeeEEeeeeccce-eeEEEeeccCCCccceEEEEEEeeccCC------------------------
Q 004615 511 LKREFKVEANVGAPQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEAG------------------------ 565 (742)
Q Consensus 511 L~~~~~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~gg~~~~~~v~~~~~P~~~~------------------------ 565 (742)
|+++|++++.+++|+|+|||||.++++ ..++ ++ ++|++|+++++|++++
T Consensus 448 L~~~~~vev~~~~p~V~yrETI~~~~~~~~~~----~~--~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 521 (731)
T PRK07560 448 IKRDYGIEVVTSEPIVVYRETVRGKSQVVEGK----SP--NKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILRE 521 (731)
T ss_pred HHHHhCCceEecCCEEEEEEecccCccceEEE----CC--CCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHH
Confidence 999999999999999999999998874 3332 33 4588999999999765
Q ss_pred -------------------CCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEEEEEecccc--CCCCCH
Q 004615 566 -------------------SGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYH--DVDSSV 624 (742)
Q Consensus 566 -------------------~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~--~~ds~~ 624 (742)
.+++|++++.|+.+|++|+++|++||+||+++||||||||+||+|+|+|+++| ..++++
T Consensus 522 ~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~ 601 (731)
T PRK07560 522 KLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGP 601 (731)
T ss_pred hhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeeccccccccc
Confidence 27899999999999999999999999999999999999999999999999999 457789
Q ss_pred HHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHH
Q 004615 625 LAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSA 704 (742)
Q Consensus 625 ~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~ 704 (742)
.+|++|+++||++|+++|+|+||||||+|||+||++|+|+|+++|++|||+|.+++..+ +.++|+|++|++|||||+++
T Consensus 602 ~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~-~~~~I~a~vP~~e~~gy~~~ 680 (731)
T PRK07560 602 AQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEG-DMAIIEAEAPVAEMFGFAGE 680 (731)
T ss_pred chHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCC-CcEEEEEEEehHHhcCCchH
Confidence 99999999999999999999999999999999999999999999999999999998754 67999999999999999999
Q ss_pred hhccCCceEEEEEEeCccccCCchHHHHHHHHHhhhh
Q 004615 705 LRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQEVA 741 (742)
Q Consensus 705 Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~~~~ 741 (742)
||++|+|+|+|+|+|+||+++|++.+++++.+.+..|
T Consensus 681 Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~r~rK 717 (731)
T PRK07560 681 IRSATEGRALWSTEFAGFEPVPDSLQLDIVRQIRERK 717 (731)
T ss_pred HHhhCcCCceEEEEeccceeCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999877644
No 13
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-107 Score=853.88 Aligned_cols=653 Identities=28% Similarity=0.403 Sum_probs=526.5
Q ss_pred CCCccEEEEEeecccCcccc-------cceec----cCCccCCCcHhHHhhcceEecceEEEEe----------------
Q 004615 65 PRSRRQFSVFAMAAEGRNYK-------IGEVH----EGTATMDWMEQEQERGITITSAATTTYW---------------- 117 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~-------~g~v~----~g~~~~D~~~~E~erGITi~s~~~~~~~---------------- 117 (742)
..++||+++|+|++|||+|+ .|-+. .++++||++++||||||||+|+++++.+
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 36799999999999999984 44443 2359999999999999999999999988
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChH----HHH
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFF----RTR 193 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~----~~~ 193 (742)
++++|||||+|||+||++||.+|||+.|||++|||+++||+.||+++++||..+++.+++|+|||||.-.+++ +..
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999999754432 222
Q ss_pred HHHHHHh-CCcceEEEeccCCCCcceeeeeccc-ceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccC---
Q 004615 194 DMIVTNL-GAKPLVVQLPVGAEDNFKGVVDLVK-MKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD--- 268 (742)
Q Consensus 194 ~~i~~~l-~~~~~~~~~Pi~~~~~f~g~idl~~-~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~d--- 268 (742)
+.++... +.+.+.-.+ ++.--|.+.+.. ...+.|.+.-+||.|++..++..|..++......|+..+|...
T Consensus 176 qtf~R~VE~vNviisTy----~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~ 251 (842)
T KOG0469|consen 176 QTFQRIVENVNVIISTY----GDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFN 251 (842)
T ss_pred HHHHHHHhcccEEEEec----ccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccC
Confidence 2222222 222221111 111223333333 3356777777899999999999888887766777777776410
Q ss_pred ------------HH------------------HHHHHhcCCCCCHHHHHHHHHhhc------------------ccCcce
Q 004615 269 ------------DE------------------AMESYLEGNEPDEETIKKLIRKGT------------------IAGSFV 300 (742)
Q Consensus 269 ------------d~------------------lle~yl~~~~~~~~~l~~~l~~~~------------------~~~~~~ 300 (742)
.+ +.+..+ ....+|+...+.+.- .++.|+
T Consensus 252 ~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaim---N~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wL 328 (842)
T KOG0469|consen 252 PKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIM---NFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWL 328 (842)
T ss_pred ccCCcccccccccccCccccceeEEeechHHHHHHHHh---hccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhc
Confidence 00 000000 112233333332221 122344
Q ss_pred eeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccccCCCCCeEEEEEEEEecCCC-ceEEEE
Q 004615 301 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFV-GSLTFV 374 (742)
Q Consensus 301 Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~-G~l~~~ 374 (742)
|. -+.||++|.-+||||..++.++.. +.++........||+++|+++||+||...... .+++||
T Consensus 329 PA----------adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFG 398 (842)
T KOG0469|consen 329 PA----------ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFG 398 (842)
T ss_pred ch----------HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEe
Confidence 43 268999999999999998887622 34444556778999999999999999875555 469999
Q ss_pred EEEeeEecCCCEEEeCC----CCceE-----ecceEEEeecCceeecccccCCCEEEEcCCCc-cccCceeecCCCcccc
Q 004615 375 RVYAGTLSAGSYVLNAN----KGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDADHPILL 444 (742)
Q Consensus 375 RV~sG~L~~gd~v~~~~----~~~~~-----kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~-~~tGdTL~~~~~~~~l 444 (742)
|||||++..|+++++.. .|+++ .|++..+|+|+..++|+.++||+|+++.|+++ +.++.||+..+....+
T Consensus 399 RVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNm 478 (842)
T KOG0469|consen 399 RVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNM 478 (842)
T ss_pred eeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccc
Confidence 99999999999999643 34443 37778899999999999999999999999988 4556689887777778
Q ss_pred cccCCC-CceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhc-CeEEEEe
Q 004615 445 ERMDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVG 522 (742)
Q Consensus 445 ~~i~~~-~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~ 522 (742)
+-|+|+ .||++++++++++.|++||.++|++|++.||.+.+.++ |+||++|.|.||||||||+++|++.| ++.++.+
T Consensus 479 rvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~-esGehiiAgaGeLHLEICLkDLeedhA~iPlk~s 557 (842)
T KOG0469|consen 479 RVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPLKKS 557 (842)
T ss_pred eEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEec-cCCceEEeccchhhHHHHHhhHhhcccCCceecC
Confidence 888887 99999999999999999999999999999999999985 79999999999999999999999999 8999999
Q ss_pred CceeeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCC-------------------------------------
Q 004615 523 APQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG------------------------------------- 565 (742)
Q Consensus 523 ~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~------------------------------------- 565 (742)
+|.|+||||+.+++..... +...+.+.++++..+|++++
T Consensus 558 dPvVsYrEtvs~~ss~~~l----sKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKI 633 (842)
T KOG0469|consen 558 DPVVSYRETVSEESSQTCL----SKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKI 633 (842)
T ss_pred CCeeeeecccccccchhhh----ccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhhee
Confidence 9999999999887654321 22223345666777776422
Q ss_pred -------C-CceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeeeEEEEEEeccccCCCCCHHH--HHHHHHHHH
Q 004615 566 -------S-GYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLA--FQLAARGAF 635 (742)
Q Consensus 566 -------~-~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~~ds~~~~--f~~a~~~a~ 635 (742)
. .+.+.+.+++-.+.++++++|..||+||.++|||+|+.+++|||.|+|..+|....+.+. +.+.+|+++
T Consensus 634 WCfgPd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ 713 (842)
T KOG0469|consen 634 WCFGPDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVL 713 (842)
T ss_pred eEeCCCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHH
Confidence 1 256677778888889999999999999999999999999999999999999986655543 447999999
Q ss_pred HHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCe-EEEEEEechhhhhchHHHhhccCCceEE
Q 004615 636 REGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRAS 714 (742)
Q Consensus 636 ~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~-~~i~a~~P~~e~~gy~~~Lrs~T~G~a~ 714 (742)
+.+++.|+|+|+||+|.|||+||++++|.||+.|++|||++.+.+...|+. +.|+|++|+.|+|||..+|||.|.|+|+
T Consensus 714 ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAf 793 (842)
T KOG0469|consen 714 YASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAF 793 (842)
T ss_pred HHHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccc
Confidence 999999999999999999999999999999999999999999998876554 9999999999999999999999999999
Q ss_pred EEEEeCccccCCchHHH------HHHHHHhh
Q 004615 715 YIMQLAKFDVVPQHIQN------QLAAKEQE 739 (742)
Q Consensus 715 ~~~~f~~y~~v~~~~~~------~~~~~~~~ 739 (742)
.+|.|+||+++|+++.+ +++.+.++
T Consensus 794 pq~vFdHws~lpgdp~dp~sk~~~iV~~~RK 824 (842)
T KOG0469|consen 794 PQMVFDHWSILPGDPLDPTSKPGQIVLATRK 824 (842)
T ss_pred cceeeeccccCCCCCCCCCccchHHHHHHHH
Confidence 99999999999999865 55555443
No 14
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=5.8e-87 Score=763.95 Aligned_cols=444 Identities=30% Similarity=0.497 Sum_probs=403.7
Q ss_pred ccEEEEEeecccCcccccceecc--C---------CccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHE--G---------TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 136 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~--g---------~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~e 136 (742)
+|||+|+||++|||||+++++-. | .++||++++|++|||||.++..++.|++++|||||||||.||..+
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 69999999999999996655421 1 378999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCc
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 216 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~ 216 (742)
+.++++.+|+||+||||.+|+++||+.+|+++.+.++|+|+|+||||+..++++++++++.+.|...
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~------------- 147 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL------------- 147 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh-------------
Confidence 9999999999999999999999999999999999999999999999999888888888887755320
Q ss_pred ceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 004615 217 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 296 (742)
Q Consensus 217 f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~ 296 (742)
| .++ .
T Consensus 148 --------------------g-----------------------------~~~--------------------------e 152 (594)
T TIGR01394 148 --------------------G-----------------------------ADD--------------------------E 152 (594)
T ss_pred --------------------c-----------------------------ccc--------------------------c
Confidence 0 000 0
Q ss_pred CcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecC
Q 004615 297 GSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 366 (742)
Q Consensus 297 ~~~~Pv~~~Sa~~~~----------gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 366 (742)
...+|++++||++|. |+.+||+.|++++|+|.. ++++||+++||++++++
T Consensus 153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~--------------------~~~~pl~~~V~~i~~d~ 212 (594)
T TIGR01394 153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKG--------------------DLDEPLQMLVTNLDYDE 212 (594)
T ss_pred cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCC--------------------CCCCCEEEEEEEEEeeC
Confidence 112689999999996 799999999999999964 14789999999999999
Q ss_pred CCceEEEEEEEeeEecCCCEEEeCCCCc---eEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCCCccc
Q 004615 367 FVGSLTFVRVYAGTLSAGSYVLNANKGK---KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPIL 443 (742)
Q Consensus 367 ~~G~l~~~RV~sG~L~~gd~v~~~~~~~---~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~~~~~ 443 (742)
++|+++++||++|+|++||.|++.+.+. .++|++|+.++|.++.++++|.|||||+|.|++++.+|||||+.+++.+
T Consensus 213 ~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~~~ 292 (594)
T TIGR01394 213 YLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEA 292 (594)
T ss_pred CCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCcccc
Confidence 9999999999999999999999987632 5799999999999999999999999999999999999999999998999
Q ss_pred ccccCCCCceEEEEEEeCCC---cCHHH------HHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhh
Q 004615 444 LERMDFPDPVIKVAIEPKTK---ADIDK------MANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKRE 514 (742)
Q Consensus 444 l~~i~~~~Pvv~~~Iep~~~---~d~~k------L~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~ 514 (742)
++++++++|+++++++|+++ ++..| |.++|.+++++||+|+++.++++++++|+|+|||||+|+++||+|+
T Consensus 293 l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre 372 (594)
T TIGR01394 293 LPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE 372 (594)
T ss_pred CCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc
Confidence 99999999999999999865 33333 9999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEeCceeeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHH
Q 004615 515 FKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEEC 594 (742)
Q Consensus 515 ~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a 594 (742)
|+|+.+++|+|+||| |.
T Consensus 373 -g~e~~~~~P~V~yre-i~------------------------------------------------------------- 389 (594)
T TIGR01394 373 -GFELQVGRPQVIYKE-ID------------------------------------------------------------- 389 (594)
T ss_pred -CceEEEeCCEEEEEe-CC-------------------------------------------------------------
Confidence 999999999999999 52
Q ss_pred HHcCcccCCCeeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCc
Q 004615 595 MSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRG 674 (742)
Q Consensus 595 ~~~Gpl~g~pv~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg 674 (742)
| .||||||+++|.||++|+|+||++|++|||
T Consensus 390 ---g----------------------------------------------~llEPi~~~~i~vp~e~~G~v~~~l~~RrG 420 (594)
T TIGR01394 390 ---G----------------------------------------------KKLEPIEELTIDVPEEHVGAVIEKLGKRKG 420 (594)
T ss_pred ---C----------------------------------------------eEECCEEEEEEEechHHHHHHHHHHHHhCC
Confidence 0 478999999999999999999999999999
Q ss_pred eecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHHH
Q 004615 675 QINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQN 731 (742)
Q Consensus 675 ~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~ 731 (742)
+|+++++.+++++.|+|.+|+++|+||.++|||+|+|+|+|+++|+||+++|++++.
T Consensus 421 ~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~~ 477 (594)
T TIGR01394 421 EMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIET 477 (594)
T ss_pred EEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCCC
Confidence 999999866578999999999999999999999999999999999999999987654
No 15
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=7.8e-85 Score=744.72 Aligned_cols=444 Identities=27% Similarity=0.446 Sum_probs=402.4
Q ss_pred CCccEEEEEeecccCcccccceecc-----------CCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE-----------GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~-----------g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
+++|||+|+||+++||||++.++-. .+++||++++|++||||+.+..+++.|++++|||||||||.||.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 5789999999999999996555422 24899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAE 214 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~ 214 (742)
.++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|.|+|+||||+..++++++++++.+.|..-
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l----------- 151 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL----------- 151 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999888765320
Q ss_pred CcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 004615 215 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 294 (742)
Q Consensus 215 ~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~ 294 (742)
|. .
T Consensus 152 -------~~--------------------------------------------~-------------------------- 154 (607)
T PRK10218 152 -------DA--------------------------------------------T-------------------------- 154 (607)
T ss_pred -------Cc--------------------------------------------c--------------------------
Confidence 00 0
Q ss_pred ccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEe
Q 004615 295 IAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 364 (742)
Q Consensus 295 ~~~~~~Pv~~~Sa~~~~----------gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 364 (742)
....-+||+++||++|. |+.+|||+|++++|+|.. ++++||.++|||+++
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~--------------------~~~~Pl~~~V~k~~~ 214 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDV--------------------DLDGPFQMQISQLDY 214 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEeeEe
Confidence 00112689999999998 699999999999999963 247899999999999
Q ss_pred cCCCceEEEEEEEeeEecCCCEEEeCCC-Cc--eEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCCCc
Q 004615 365 DPFVGSLTFVRVYAGTLSAGSYVLNANK-GK--KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP 441 (742)
Q Consensus 365 ~~~~G~l~~~RV~sG~L~~gd~v~~~~~-~~--~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~~~ 441 (742)
++++|+++++||++|+|++||.|++.+. ++ .++|++|+.++|.++.++++|.|||||+++|++++.+|||||+.+++
T Consensus 215 d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~ 294 (607)
T PRK10218 215 NSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNV 294 (607)
T ss_pred cCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCCCc
Confidence 9999999999999999999999999776 44 58999999999999999999999999999999999999999999888
Q ss_pred ccccccCCCCceEEEEEEeCC---CcCHHHHHH---HHHHHHh---cCCceEEEEcCCCCcEEEEecChhHHHHHHHHHH
Q 004615 442 ILLERMDFPDPVIKVAIEPKT---KADIDKMAN---GLIKLAQ---EDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLK 512 (742)
Q Consensus 442 ~~l~~i~~~~Pvv~~~Iep~~---~~d~~kL~~---aL~~L~~---eDPsl~v~~~~etge~il~g~GelHLei~~~rL~ 512 (742)
..++++++|+|++++++.|++ .+|..|+.. +|.+|.+ +||+|+++.+++|++++|+|+|||||+|+++||+
T Consensus 295 ~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lr 374 (607)
T PRK10218 295 EALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMR 374 (607)
T ss_pred ccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHH
Confidence 889999999999999999999 778888754 5555555 9999999999999999999999999999999999
Q ss_pred hhcCeEEEEeCceeeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHH
Q 004615 513 REFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLE 592 (742)
Q Consensus 513 ~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~ 592 (742)
|+ |+|+.+++|+|+|||| + +
T Consensus 375 re-g~e~~~~~P~V~yret--~-----g---------------------------------------------------- 394 (607)
T PRK10218 375 RE-GFELAVSRPKVIFREI--D-----G---------------------------------------------------- 394 (607)
T ss_pred hC-CceEEEeCCEEEEEEE--C-----C----------------------------------------------------
Confidence 99 9999999999999998 0 0
Q ss_pred HHHHcCcccCCCeeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcC
Q 004615 593 ECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSR 672 (742)
Q Consensus 593 ~a~~~Gpl~g~pv~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~r 672 (742)
+.||||++++|.||++|+|+||++|++|
T Consensus 395 ----------------------------------------------------~klEPi~~v~i~vP~e~~G~V~~~l~~R 422 (607)
T PRK10218 395 ----------------------------------------------------RKQEPYENVTLDVEEQHQGSVMQALGER 422 (607)
T ss_pred ----------------------------------------------------EEeCCeEEEEEEechhhHHHHHHHHHhc
Confidence 0159999999999999999999999999
Q ss_pred CceecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC-chH
Q 004615 673 RGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP-QHI 729 (742)
Q Consensus 673 rg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~-~~~ 729 (742)
||+++++++.+++++.|+|.+|+++|+||.++|+|+|+|+|.|+++|+||+++| +++
T Consensus 423 rG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~ 480 (607)
T PRK10218 423 KGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480 (607)
T ss_pred CCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCC
Confidence 999999998655789999999999999999999999999999999999999999 554
No 16
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=8.7e-85 Score=748.84 Aligned_cols=450 Identities=28% Similarity=0.434 Sum_probs=402.0
Q ss_pred CCccEEEEEeecccCcccccceec----------cCCccCCCcHhHHhhcceEecceEEEEec-----CeEEEEEcCCCc
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVH----------EGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDTPGH 130 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~----------~g~~~~D~~~~E~erGITi~s~~~~~~~~-----~~~inlIDTPGh 130 (742)
+++|||+|+||+++||||+++++- .+++++|++++|++||||++++.+++.|+ ++.+||||||||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 578999999999999999766552 25699999999999999999999999996 689999999999
Q ss_pred cCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEec
Q 004615 131 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 131 ~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~P 210 (742)
.||..++.++++.+|++|+|||+.+|++.||...|.++...++|+|+|+||+|+..++++++.+++.+.++..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~------- 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID------- 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC-------
Confidence 9999999999999999999999999999999999999999999999999999998777666656655443321
Q ss_pred cCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHH
Q 004615 211 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 290 (742)
Q Consensus 211 i~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l 290 (742)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCce
Q 004615 291 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 370 (742)
Q Consensus 291 ~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~ 370 (742)
..+++++||++|.|++.|+++|.+.+|+|.. ++++|++++||++++++++|.
T Consensus 158 --------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~--------------------~~~~pl~~~Vfd~~~d~~~G~ 209 (600)
T PRK05433 158 --------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKG--------------------DPDAPLKALIFDSWYDNYRGV 209 (600)
T ss_pred --------cceEEEEecCCCCCHHHHHHHHHHhCccccC--------------------CCCCCceEEEEEEEecCCCce
Confidence 0137889999999999999999999999965 247899999999999999999
Q ss_pred EEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEc-C---CCccccCceeecCCCc--ccc
Q 004615 371 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP--ILL 444 (742)
Q Consensus 371 l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~-g---l~~~~tGdTL~~~~~~--~~l 444 (742)
++++||++|+|++||+|++.++++.++|++|+.+++ +..+++++.||||+++. | ++++++||||++.+++ .++
T Consensus 210 v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l 288 (600)
T PRK05433 210 VVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPL 288 (600)
T ss_pred EEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCC
Confidence 999999999999999999999999999999997665 78999999999999884 4 4568999999988776 478
Q ss_pred cccCCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeEE
Q 004615 445 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEA 519 (742)
Q Consensus 445 ~~i~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~~~v~v 519 (742)
++++.|+|+++++++|.+.+|.++|.+||++|+.|||||+++ +||++.++.| ||+|||||+++||+++||+++
T Consensus 289 ~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v 366 (600)
T PRK05433 289 PGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDL 366 (600)
T ss_pred CCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhhCceE
Confidence 899999999999999999999999999999999999999997 6899999999 999999999999999999999
Q ss_pred EEeCceeeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCc
Q 004615 520 NVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGV 599 (742)
Q Consensus 520 ~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gp 599 (742)
.+++|+|+||||+++. . ++.|.| |
T Consensus 367 ~~~~P~V~Yreti~~g-------------~-----------------~~~~~~--------------------------p 390 (600)
T PRK05433 367 ITTAPSVVYEVTLTDG-------------E-----------------VIEVDN--------------------------P 390 (600)
T ss_pred EEecCEEEEEEEEeCC-------------c-----------------EEEEEC--------------------------c
Confidence 9999999999998751 0 111221 2
Q ss_pred ccCCCeeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceeccc
Q 004615 600 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSF 679 (742)
Q Consensus 600 l~g~pv~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~ 679 (742)
.||| ||++++ .||||||+++|.+|++|+|+||++|++|||+++++
T Consensus 391 -~~~p----------------ds~~~~------------------~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~ 435 (600)
T PRK05433 391 -SKLP----------------DPGKIE------------------EIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDM 435 (600)
T ss_pred -ccCC----------------Cccccc------------------eEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCc
Confidence 2444 566542 89999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEechhhh-hchHHHhhccCCceEEEEEEeCccccC
Q 004615 680 GDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 725 (742)
Q Consensus 680 ~~~~~~~~~i~a~~P~~e~-~gy~~~Lrs~T~G~a~~~~~f~~y~~v 725 (742)
++.+ ++..|+|.+|++|| ++|.++|||+|+|+|+|.|+|+||++.
T Consensus 436 ~~~~-~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 436 EYLG-NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES 481 (600)
T ss_pred EecC-CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccc
Confidence 9876 68999999999999 999999999999999999999999986
No 17
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.7e-83 Score=737.52 Aligned_cols=450 Identities=27% Similarity=0.437 Sum_probs=399.5
Q ss_pred CccEEEEEeecccCcccccceec----------cCCccCCCcHhHHhhcceEecceEEEEec--C---eEEEEEcCCCcc
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVH----------EGTATMDWMEQEQERGITITSAATTTYWN--K---HRINIIDTPGHV 131 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~----------~g~~~~D~~~~E~erGITi~s~~~~~~~~--~---~~inlIDTPGh~ 131 (742)
++|||+|+||+++||||+++++- .+++++|++++|++||||++++.+++.|+ + +.+||||||||.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 68999999999999999776652 25689999999999999999999999995 3 899999999999
Q ss_pred CcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEecc
Q 004615 132 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 211 (742)
Q Consensus 132 DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi 211 (742)
||..++.++++.+|++|+|+|+.+|++.||...|..+.+.++|+|+|+||+|+..++.+++.+++.+.++..
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~-------- 153 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD-------- 153 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC--------
Confidence 999999999999999999999999999999999999999999999999999987766555555554433220
Q ss_pred CCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHH
Q 004615 212 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 291 (742)
Q Consensus 212 ~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~ 291 (742)
T Consensus 154 -------------------------------------------------------------------------------- 153 (595)
T TIGR01393 154 -------------------------------------------------------------------------------- 153 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceE
Q 004615 292 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 371 (742)
Q Consensus 292 ~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l 371 (742)
..+++++||++|.|++.|+++|.+++|+|.. ++++|+.++||++++++++|.+
T Consensus 154 -------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~~V~~~~~d~~~G~v 206 (595)
T TIGR01393 154 -------ASEAILASAKTGIGIEEILEAIVKRVPPPKG--------------------DPDAPLKALIFDSHYDNYRGVV 206 (595)
T ss_pred -------cceEEEeeccCCCCHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEEEEEeCCCcEE
Confidence 0137889999999999999999999999965 2478999999999999999999
Q ss_pred EEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEc-C---CCccccCceeecCCCcc--ccc
Q 004615 372 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHPI--LLE 445 (742)
Q Consensus 372 ~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~-g---l~~~~tGdTL~~~~~~~--~l~ 445 (742)
+++||++|+|++||+|++.++++.++|++|+.+++.. .+++++.||||+++. | ++++++||||++.+++. +++
T Consensus 207 ~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~ 285 (595)
T TIGR01393 207 ALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLP 285 (595)
T ss_pred EEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCC
Confidence 9999999999999999999999999999999777665 899999999998874 4 45689999999887663 788
Q ss_pred ccCCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeEEE
Q 004615 446 RMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEAN 520 (742)
Q Consensus 446 ~i~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~~~v~v~ 520 (742)
++++|+|+++++++|.+.+|.++|.+||++|+.|||+|+++. ||++.++.| ||+|||||+++||+++||+++.
T Consensus 286 ~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~--e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~ 363 (595)
T TIGR01393 286 GFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYEP--ESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLI 363 (595)
T ss_pred CCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEEe--cCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeE
Confidence 999999999999999999999999999999999999999984 799988885 9999999999999999999999
Q ss_pred EeCceeeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcc
Q 004615 521 VGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVL 600 (742)
Q Consensus 521 ~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl 600 (742)
+++|+|+||||+++ | + .+ .|.| |
T Consensus 364 ~~~P~V~Yreti~~-------------g--~----~~-----------~~~~--------------------------p- 386 (595)
T TIGR01393 364 TTAPSVIYRVYLTN-------------G--E----VI-----------EVDN--------------------------P- 386 (595)
T ss_pred EecCEEEEEEEecC-------------C--c----EE-----------EEEC--------------------------c-
Confidence 99999999999863 1 1 11 1221 2
Q ss_pred cCCCeeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccc
Q 004615 601 AGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFG 680 (742)
Q Consensus 601 ~g~pv~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~ 680 (742)
.|||+.|+ -|.||||||+++|.+|++|+|+||++|++|||++.+++
T Consensus 387 ~~~p~~~~----------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~ 432 (595)
T TIGR01393 387 SDLPDPGK----------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNME 432 (595)
T ss_pred ccCCCccc----------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcE
Confidence 48887662 17999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEechhhh-hchHHHhhccCCceEEEEEEeCccccC
Q 004615 681 DKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 725 (742)
Q Consensus 681 ~~~~~~~~i~a~~P~~e~-~gy~~~Lrs~T~G~a~~~~~f~~y~~v 725 (742)
..++++..|+|.+|++|+ ++|+++|||+|+|+|+|.++|+||++-
T Consensus 433 ~~~~~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 478 (595)
T TIGR01393 433 YLDPNRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPS 478 (595)
T ss_pred EcCCCeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCcccc
Confidence 865457999999999997 999999999999999999999999983
No 18
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-84 Score=701.20 Aligned_cols=644 Identities=24% Similarity=0.352 Sum_probs=490.4
Q ss_pred CCCCccEEEEEeecccCccccccee----c-cC-------CccCCCcHhHHhhcceEecceEEEEe-----cCeEEEEEc
Q 004615 64 SPRSRRQFSVFAMAAEGRNYKIGEV----H-EG-------TATMDWMEQEQERGITITSAATTTYW-----NKHRINIID 126 (742)
Q Consensus 64 ~~~~~~ni~iiGh~~~Gk~~~~g~v----~-~g-------~~~~D~~~~E~erGITi~s~~~~~~~-----~~~~inlID 126 (742)
.+..+|||+++||-.|||++++.-+ + ++ -.++|.+..|+|||+||++...++.. +.+.+|++|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 4568999999999999999854322 1 11 17899999999999999999999988 468999999
Q ss_pred CCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCC-----------hHHHHHH
Q 004615 127 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-----------FFRTRDM 195 (742)
Q Consensus 127 TPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~-----------~~~~~~~ 195 (742)
||||+||+.|+.++|+.+||+++|||+.+||.-+|++++++|-+.++|++++|||+||+..+ +..++++
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~ 283 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDE 283 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998543 2334555
Q ss_pred HHHHhCC---cceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHH------------------
Q 004615 196 IVTNLGA---KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQ------------------ 254 (742)
Q Consensus 196 i~~~l~~---~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~------------------ 254 (742)
++..+.. .-.++.-|+ ..+++|.+...|++|++..+..-|.+...
T Consensus 284 iN~~is~~s~~~~~~~sP~--------------~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~ 349 (971)
T KOG0468|consen 284 INNLISTFSKDDNPVVSPI--------------LGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFH 349 (971)
T ss_pred hcchhhhcccccccccccc--------------cCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhcccccc
Confidence 5433321 111222232 23456666667777777666544433210
Q ss_pred -----------------HHHHHHHHHHHc-------cCHHHHHHHhc--CCCCCHHHHHHHHHhhcccCcceeeeecccc
Q 004615 255 -----------------EYRSQMIETIVE-------LDDEAMESYLE--GNEPDEETIKKLIRKGTIAGSFVPVLCGSAF 308 (742)
Q Consensus 255 -----------------~~r~~l~e~~~e-------~dd~lle~yl~--~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~ 308 (742)
.+-+.++|.+.. .-++-+...|. |..++.++++-..+-.. -.+|-|-+
T Consensus 350 ~ktrkF~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll------~lvc~~ff 423 (971)
T KOG0468|consen 350 SKTRKFVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLL------RLVCKSFF 423 (971)
T ss_pred ccccccccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHH------HHHHHHhc
Confidence 111233332221 11122222221 22344444332111100 01111111
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCCCC------CCCCCCcccccccccCCCCCeEEEEEEEEec-CCCceEEEEEEEeeEe
Q 004615 309 KNKGVQPLLDAVVDYLPSPLDLPAMK------GTDPENPEATLERAASDDEPFAGLAFKIMSD-PFVGSLTFVRVYAGTL 381 (742)
Q Consensus 309 ~~~gv~~LLd~I~~~lPsP~~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~-~~~G~l~~~RV~sG~L 381 (742)
.- -..+.|++++++|+|.+..... | +.++.....+..|++.+|+++.+.|++.. ...-+.+|+||+||++
T Consensus 424 g~--~sgfvd~~v~hi~sP~e~a~~K~~hsy~G-~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~ 500 (971)
T KOG0468|consen 424 GI--ESGFVDMPVEHIPSPRENAARKAEHSYTG-TKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQV 500 (971)
T ss_pred cc--hhhhhHhhHhhcCChhhhhccccceeecC-CCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecce
Confidence 11 1347899999999998843322 2 22223345568899999999999999863 3456899999999999
Q ss_pred cCCCEEEeCCCC---------ceEecceEEEeecCceeecccccCCCEEEEcCCCc-cccCceeecC---CCcccccccC
Q 004615 382 SAGSYVLNANKG---------KKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDA---DHPILLERMD 448 (742)
Q Consensus 382 ~~gd~v~~~~~~---------~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~-~~tGdTL~~~---~~~~~l~~i~ 448 (742)
+.|+.|.....+ ....|+++++..+++..+|++|++|.++.|.|++. ..+..|+++. ++...+++++
T Consensus 501 ~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~ 580 (971)
T KOG0468|consen 501 VTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLK 580 (971)
T ss_pred eecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchh
Confidence 999999865433 23468999999999999999999999999999987 5667888864 3456778887
Q ss_pred C-CCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhc-CeEEEEeCcee
Q 004615 449 F-PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQV 526 (742)
Q Consensus 449 ~-~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~~p~V 526 (742)
+ +.||++++++|.++++++||.++|++.++.+|.+..+. ||+||++|.|-|||.|++++.+||.-| .+++++++|.|
T Consensus 581 ~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv 659 (971)
T KOG0468|consen 581 FNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVV 659 (971)
T ss_pred cCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCcee
Confidence 5 59999999999999999999999999999999998877 689999999999999999999999999 79999999999
Q ss_pred eEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCC-----------------------------------------
Q 004615 527 NYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAG----------------------------------------- 565 (742)
Q Consensus 527 ~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~----------------------------------------- 565 (742)
.|.||+.+.++... +.. + .+.-..+++..||++.+
T Consensus 660 ~F~Et~vetssikc-fae-t--pnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFg 735 (971)
T KOG0468|consen 660 RFCETVVETSSIKC-FAE-T--PNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFG 735 (971)
T ss_pred EEEEeeecccchhh-hcc-C--CCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccC
Confidence 99999988654321 100 0 01112344444454321
Q ss_pred ----CCceEEecccCCCCC----cccHHHHHHHHHHHHHcCcccCCCeeeEEEEEEeccccCCCCCH--HHHHHHHHHHH
Q 004615 566 ----SGYEFKSEIKGGAVP----KEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSV--LAFQLAARGAF 635 (742)
Q Consensus 566 ----~~~~f~~~~~~~~i~----~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~~ds~~--~~f~~a~~~a~ 635 (742)
..+++.+.+-...+. ..++++|.+||+|++++||||++|+++|+|+|.|+...+...+. ..+.+++|+++
T Consensus 736 pd~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~ 815 (971)
T KOG0468|consen 736 PDYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVA 815 (971)
T ss_pred CCCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHH
Confidence 114444444333333 34678999999999999999999999999999999876544333 33558999999
Q ss_pred HHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCe-EEEEEEechhhhhchHHHhhccCCceEE
Q 004615 636 REGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRAS 714 (742)
Q Consensus 636 ~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~-~~i~a~~P~~e~~gy~~~Lrs~T~G~a~ 714 (742)
+.|+..|.|+||||+|.|||++|.+++..|+..|++|||+|....+..|+. ..|+|++|+.|+|||.++||-.|+|+|.
T Consensus 816 YsafL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~ 895 (971)
T KOG0468|consen 816 YSAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAF 895 (971)
T ss_pred HHHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhH
Confidence 999999999999999999999999999999999999999999998877665 8999999999999999999999999999
Q ss_pred EEEEeCccccCCchHHHHHHH
Q 004615 715 YIMQLAKFDVVPQHIQNQLAA 735 (742)
Q Consensus 715 ~~~~f~~y~~v~~~~~~~~~~ 735 (742)
+++.|.||++||++++++-|.
T Consensus 896 C~~vF~HW~~VPGDpLDKsi~ 916 (971)
T KOG0468|consen 896 CLSVFDHWRIVPGDPLDKSIA 916 (971)
T ss_pred HHHhhhhcccCCCCccccccc
Confidence 999999999999999987553
No 19
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-84 Score=708.14 Aligned_cols=645 Identities=26% Similarity=0.401 Sum_probs=476.4
Q ss_pred CCCccEEEEEeecccCcccccceec----------cCC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEVH----------EGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v~----------~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF 133 (742)
...+|||++++|++|||+++..++- .|+ ++||++++||.|||||++++++...++|+|||||+|||+||
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 3679999999999999999665542 244 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCCh-----------HHHHHHHHHHhCC
Q 004615 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF-----------FRTRDMIVTNLGA 202 (742)
Q Consensus 134 ~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~-----------~~~~~~i~~~l~~ 202 (742)
++||.+|.|.+|||+++||++|||++||.+++|||+..|+.+|++||||||+..++ -+++++++...|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~~ 165 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIGQ 165 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999986543 2455555554432
Q ss_pred c---ceEEEec---c-CCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHH----------------
Q 004615 203 K---PLVVQLP---V-GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQ---------------- 259 (742)
Q Consensus 203 ~---~~~~~~P---i-~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~---------------- 259 (742)
- .+.++=- + .++..| | -...++.|...-+||.|....+..-+..+.....+.
T Consensus 166 ~~~~~v~l~~~~~~i~d~~~~F----~-p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk 240 (887)
T KOG0467|consen 166 FLGGIVELDDNWENIEDEEITF----G-PEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTK 240 (887)
T ss_pred hhcchhhccchhhhhhhcceee----c-CCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchhh
Confidence 1 0000000 0 000000 0 011223333333677777666554333222111111
Q ss_pred ------------------HHHHHHcc--------CHHHHHHHhc--CCCCCHHHHHHHHHhhcccCcceeeeeccccCCC
Q 004615 260 ------------------MIETIVEL--------DDEAMESYLE--GNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNK 311 (742)
Q Consensus 260 ------------------l~e~~~e~--------dd~lle~yl~--~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~ 311 (742)
.+|.+|.. |-+.+++-.. +..+-+.+++..+. .+..+|+|+-
T Consensus 241 ~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~--~im~~wLPls-------- 310 (887)
T KOG0467|consen 241 RICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLD--AIMSTWLPLS-------- 310 (887)
T ss_pred hhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHH--HHHHhhcccc--------
Confidence 22222221 2222222221 12223333332221 2346788864
Q ss_pred ChHHHHHHHHHhCCCCCCCCCCCCCC--------CCCcccccccccCCCCCeEEEEEEEEecC-----CCceEEEEEEEe
Q 004615 312 GVQPLLDAVVDYLPSPLDLPAMKGTD--------PENPEATLERAASDDEPFAGLAFKIMSDP-----FVGSLTFVRVYA 378 (742)
Q Consensus 312 gv~~LLd~I~~~lPsP~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~~~~V~k~~~~~-----~~G~l~~~RV~s 378 (742)
+..+-+.+.++|+|.+.+..++.. .+.+.......|++.+|..+||.|+...+ ....++|+||||
T Consensus 311 --~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~s 388 (887)
T KOG0467|consen 311 --DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFS 388 (887)
T ss_pred --cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeecc
Confidence 456677788899998765543220 00122334566889999999999997643 323689999999
Q ss_pred eEecCCCEEEeCCC-------CceEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCCCcccccccCC-C
Q 004615 379 GTLSAGSYVLNANK-------GKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF-P 450 (742)
Q Consensus 379 G~L~~gd~v~~~~~-------~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~~~~~l~~i~~-~ 450 (742)
||++.||.+|..+. -...+|.++|.++|++..+.+++++|++++|.|-..+....|||+.....++....+ -
T Consensus 389 gTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~~ 468 (887)
T KOG0467|consen 389 GTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQI 468 (887)
T ss_pred CceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeeeee
Confidence 99999999997544 134579999999999999999999999999998334667889998744443333443 3
Q ss_pred CceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhc-CeEEEEeCceeeEE
Q 004615 451 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQVNYR 529 (742)
Q Consensus 451 ~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~~p~V~yr 529 (742)
+|.++++|+|.++.+.++|.++|+.|.+.||++++..+ ++||+++...||+|||.|+.+|++ | ++++.+++|.|+||
T Consensus 469 tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~-~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP~vpfr 546 (887)
T KOG0467|consen 469 TPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVE-ENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEPLVPFR 546 (887)
T ss_pred eeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHh-hccceeeeeccHHHHHHHHHHHhh-hhceEEEecCCccchh
Confidence 99999999999999999999999999999999999986 799999999999999999999999 7 89999999999999
Q ss_pred eeeeccceee----------------------------------EEEeeccC----CCc---------------------
Q 004615 530 ESISKVSEVK----------------------------------YVHKKQSG----GQG--------------------- 550 (742)
Q Consensus 530 Eti~~~~~~~----------------------------------~~~~~~~g----g~~--------------------- 550 (742)
||+.+.+... ..|..... +.+
T Consensus 547 ET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~ 626 (887)
T KOG0467|consen 547 ETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLI 626 (887)
T ss_pred hhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccccHHH
Confidence 9994432111 00000000 000
Q ss_pred ----cce------------EEEEEEeeccCCCCceEEeccc-------CCC-CCcccHHHHHHHHHHHHHcCcccCCCee
Q 004615 551 ----QFA------------DITVRFEPMEAGSGYEFKSEIK-------GGA-VPKEYIPGVMKGLEECMSNGVLAGFPVV 606 (742)
Q Consensus 551 ----~~~------------~v~~~~~P~~~~~~~~f~~~~~-------~~~-i~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 606 (742)
.|- .-.|.++|.+.|.++.|...-. +.. +++ +-+++..||+.++..||||.||+.
T Consensus 627 s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~-l~~~ivsgfql~~~sGPlc~Ep~~ 705 (887)
T KOG0467|consen 627 SLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVAR-LSESIVSGFQLATSSGPLCNEPMQ 705 (887)
T ss_pred HHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHH-HHHHHhhhHhhhhccCcccccCcc
Confidence 000 0012356655555555543211 111 223 668999999999999999999999
Q ss_pred eEEEEEEeccccCCCCC---HHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCC
Q 004615 607 DVRAALVDGSYHDVDSS---VLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP 683 (742)
Q Consensus 607 ~v~v~l~d~~~~~~ds~---~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~ 683 (742)
+++|.+..+...+.++. .+....|++.+|++|++...|||+.|||.|+|++..|++|+||..|++|+|+|++.++.+
T Consensus 706 g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~E 785 (887)
T KOG0467|consen 706 GICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKE 785 (887)
T ss_pred cEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhhhhC
Confidence 99999998655543331 133558999999999999999999999999999999999999999999999999999877
Q ss_pred CC-eEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchH
Q 004615 684 GG-LKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHI 729 (742)
Q Consensus 684 ~~-~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 729 (742)
|+ .+.|+|.+|+.|+|||+.++|..|+|.|+.++.|+||+.++.|+
T Consensus 786 gT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DP 832 (887)
T KOG0467|consen 786 GTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDP 832 (887)
T ss_pred CCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCC
Confidence 64 59999999999999999999999999999999999999999864
No 20
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=2e-81 Score=709.79 Aligned_cols=434 Identities=31% Similarity=0.500 Sum_probs=394.8
Q ss_pred CCccEEEEEeecccCcccc-------------cceecc---CC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCC
Q 004615 66 RSRRQFSVFAMAAEGRNYK-------------IGEVHE---GT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 128 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~-------------~g~v~~---g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTP 128 (742)
+++|||+|+||+++||||+ .|.|+. |+ +++|+++.|++|||||.++..++.|++++|||||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 5789999999999999983 344442 22 669999999999999999999999999999999999
Q ss_pred CccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEE
Q 004615 129 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 208 (742)
Q Consensus 129 Gh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~ 208 (742)
||.||..++.++++.+|+||+|||+++|++.||+.+|+++...++|+++|+||||+.++++.++++++++.|+..+++++
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~ 167 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPIT 167 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHH
Q 004615 209 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 288 (742)
Q Consensus 209 ~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~ 288 (742)
+|++.++.|+|++|++.++++.|.... |.. ..+.|.+++.||++|++||+++.+ +++.+
T Consensus 168 ~Pig~~~~f~Gvvdl~~~~~~~~~~~~-~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~~ 226 (526)
T PRK00741 168 WPIGMGKRFKGVYDLYNDEVELYQPGE-GHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLRE 226 (526)
T ss_pred eccccCCceeEEEEeecceeeecccCC-CCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHHH
Confidence 999999999999999999999996421 211 134567899999999999998754 56666
Q ss_pred HH-----------HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEE
Q 004615 289 LI-----------RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAG 357 (742)
Q Consensus 289 ~l-----------~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 357 (742)
.+ ++++.++.++|||||||++|.||++|||+|++++|+|.+++... ....+ .+.++++
T Consensus 227 ~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~----------~~~~~-~~~~~~~ 295 (526)
T PRK00741 227 ELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDE----------REVEP-TEEKFSG 295 (526)
T ss_pred HHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccc----------eeecC-CCCceEE
Confidence 66 88899999999999999999999999999999999998643210 01122 3567999
Q ss_pred EEEEEEe---cCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCce
Q 004615 358 LAFKIMS---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 434 (742)
Q Consensus 358 ~V~k~~~---~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdT 434 (742)
+|||+.+ ++++|+++|+|||||+|++|+.|+|.++++.+|+++++.++|.++.++++|.||||+++.|++++++|||
T Consensus 296 ~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDT 375 (526)
T PRK00741 296 FVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDT 375 (526)
T ss_pred EEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCC
Confidence 9999984 5699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccccccCCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhh
Q 004615 435 LCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKRE 514 (742)
Q Consensus 435 L~~~~~~~~l~~i~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~ 514 (742)
||+.+ +..++++++|+|+++++|+|.++.|.+||.+||++|++||| +++.+|++|+|++|+|||||||||+++||+++
T Consensus 376 L~~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~e 453 (526)
T PRK00741 376 FTQGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNE 453 (526)
T ss_pred ccCCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHH
Confidence 99866 67788999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred cCeEEEEeCceeeEEeeee
Q 004615 515 FKVEANVGAPQVNYRESIS 533 (742)
Q Consensus 515 ~~v~v~~~~p~V~yrEti~ 533 (742)
||+++.+++|+|++-.-|.
T Consensus 454 y~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 454 YNVEAIYEPVGVATARWVE 472 (526)
T ss_pred hCCEEEEecCCccEEEEEe
Confidence 9999999999999988775
No 21
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=3.2e-77 Score=675.69 Aligned_cols=432 Identities=28% Similarity=0.445 Sum_probs=382.0
Q ss_pred CCccEEEEEeecccCcccc-------------cceec-cC---CccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCC
Q 004615 66 RSRRQFSVFAMAAEGRNYK-------------IGEVH-EG---TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 128 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~-------------~g~v~-~g---~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTP 128 (742)
+++|||+|+||+++||||+ .|.|+ .| ++++|++++|++|||||.++..++.|++++|||+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5789999999999999973 34454 23 3899999999999999999999999999999999999
Q ss_pred CccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEE
Q 004615 129 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 208 (742)
Q Consensus 129 Gh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~ 208 (742)
||.||..++.++++.+|++|+|||+..|++.||+.+|+.+...++|+|+|+||||+.++++.++++++++.++..+.+++
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~~ 168 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPIT 168 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcceeeeecccceEEEecCCCCCceeEee------cCchh----HHHHHHHHHHHHHHHHHccCHHHHHHHhcC
Q 004615 209 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYE------DIPAN----LQKMAQEYRSQMIETIVELDDEAMESYLEG 278 (742)
Q Consensus 209 ~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~------~i~~~----~~~~~~~~r~~l~e~~~e~dd~lle~yl~~ 278 (742)
+|++.+..|.|++|++.++.+.|.+...++. ... +.|.. ..+.++++|+.+ |.+++.|++
T Consensus 169 ~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~-------- 238 (527)
T TIGR00503 169 WPIGCGKLFKGVYHLLKDETYLYQSGTGGTI-QAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNE-------- 238 (527)
T ss_pred EEecCCCceeEEEEcccCcceecCccCCCce-eEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhccc--------
Confidence 9999999999999999999999965433322 222 11211 123445666666 777776642
Q ss_pred CCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEE
Q 004615 279 NEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGL 358 (742)
Q Consensus 279 ~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 358 (742)
++ ++++..+.++|||||||++|.||+.|||+|++++|+|.++.... ....+ .+.||+++
T Consensus 239 --~~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~----------~~~~~-~~~~~~~~ 297 (527)
T TIGR00503 239 --FD--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT----------RTVEP-TEEKFSGF 297 (527)
T ss_pred --cC--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc----------eecCC-CCCCeeEE
Confidence 22 25566789999999999999999999999999999998643210 11222 46789999
Q ss_pred EEEEEe--c-CCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCcee
Q 004615 359 AFKIMS--D-PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETL 435 (742)
Q Consensus 359 V~k~~~--~-~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL 435 (742)
|||+.+ | +++|+++|+|||||+|++|++|+|.++++++|+++++.++|.+++++++|.||||+++.|++++++||||
T Consensus 298 VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl 377 (527)
T TIGR00503 298 VFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTF 377 (527)
T ss_pred EEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEe
Confidence 999988 7 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccccCCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhc
Q 004615 436 CDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF 515 (742)
Q Consensus 436 ~~~~~~~~l~~i~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~ 515 (742)
|+. .+..++++++|+|+++++|+|.++.|.+||.+||++|++||| +++.+|++|+|++|+|||||||||+++||+++|
T Consensus 378 ~~~-~~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey 455 (527)
T TIGR00503 378 TQG-EKIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEY 455 (527)
T ss_pred cCC-CceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHh
Confidence 984 467788899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CeEEEEeCceeeEEe
Q 004615 516 KVEANVGAPQVNYRE 530 (742)
Q Consensus 516 ~v~v~~~~p~V~yrE 530 (742)
|+++.+++|+|+.-=
T Consensus 456 ~v~v~~~~~~v~~~r 470 (527)
T TIGR00503 456 NVEARYEPVNVATAR 470 (527)
T ss_pred CCeEEEeCCCceEEE
Confidence 999999999998543
No 22
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-77 Score=636.98 Aligned_cols=454 Identities=28% Similarity=0.451 Sum_probs=392.2
Q ss_pred CCccEEEEEeecccCcccc-------cceecc--C-CccCCCcHhHHhhcceEecceEEEEecC---eEEEEEcCCCccC
Q 004615 66 RSRRQFSVFAMAAEGRNYK-------IGEVHE--G-TATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPGHVD 132 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~-------~g~v~~--g-~~~~D~~~~E~erGITi~s~~~~~~~~~---~~inlIDTPGh~D 132 (742)
+++||++||+|++|||+|+ .|.++. + +.+||.+..||||||||++...++.|++ |.+||||||||+|
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 7899999999999999994 454444 2 3999999999999999999999999998 9999999999999
Q ss_pred cHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccC
Q 004615 133 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 212 (742)
Q Consensus 133 F~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~ 212 (742)
|++||.|+|..||||||||||.+|+++||...+..|.++|+.+|.||||+|++.+|.+++..++.+.|+..+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~-------- 209 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP-------- 209 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999998775421
Q ss_pred CCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHh
Q 004615 213 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 292 (742)
Q Consensus 213 ~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~ 292 (742)
T Consensus 210 -------------------------------------------------------------------------------- 209 (650)
T KOG0462|consen 210 -------------------------------------------------------------------------------- 209 (650)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEE
Q 004615 293 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 372 (742)
Q Consensus 293 ~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~ 372 (742)
-+++.+||++|.|+..||++|++.+|+|... .++||.|++|.+++|+|+|.++
T Consensus 210 -------~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~--------------------~d~plr~Lifds~yD~y~G~I~ 262 (650)
T KOG0462|consen 210 -------AEVIYVSAKTGLNVEELLEAIIRRVPPPKGI--------------------RDAPLRMLIFDSEYDEYRGVIA 262 (650)
T ss_pred -------cceEEEEeccCccHHHHHHHHHhhCCCCCCC--------------------CCcchHHHhhhhhhhhhcceEE
Confidence 1388899999999999999999999999762 4899999999999999999999
Q ss_pred EEEEEeeEecCCCEEEeCCCCceEecceEEEeecC--ceeecccccCCCEEEEcC-CCccccCceeecCCC---cccccc
Q 004615 373 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN--SREDVKVALAGDIIALAG-LKDTITGETLCDADH---PILLER 446 (742)
Q Consensus 373 ~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~--~~~~v~~a~aGdIv~I~g-l~~~~tGdTL~~~~~---~~~l~~ 446 (742)
++||..|.+++||+|....+++...++.+-+|..+ ...++....+|+|++-.+ +++...|||++.... ...++.
T Consensus 263 ~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~ 342 (650)
T KOG0462|consen 263 LVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPG 342 (650)
T ss_pred EEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCC
Confidence 99999999999999999988887777777666543 333455566667776666 778999999998652 345667
Q ss_pred cCCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCC--CCc-EEEEecChhHHHHHHHHHHhhcCeEEEEeC
Q 004615 447 MDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEE--INQ-TVIEGMGELHLEIIVDRLKREFKVEANVGA 523 (742)
Q Consensus 447 i~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~e--tge-~il~g~GelHLei~~~rL~~~~~v~v~~~~ 523 (742)
++...|++++...|.+..|...|..++.+|+.+|+++.+..+.. .|+ +.+.++|.|||+|+.+||++|||.++.+++
T Consensus 343 ~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~ 422 (650)
T KOG0462|consen 343 FEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTP 422 (650)
T ss_pred CCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCceeeecC
Confidence 77789999999999999999999999999999999999987532 233 688999999999999999999999999999
Q ss_pred ceeeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCC
Q 004615 524 PQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGF 603 (742)
Q Consensus 524 p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~ 603 (742)
|.|+||--..+.. ++ ....|. -+
T Consensus 423 PtV~Yr~~~~~~~-----------------~~-~i~np~---------------------------------------~f 445 (650)
T KOG0462|consen 423 PTVPYRVVYSNGD-----------------EI-LISNPA---------------------------------------LF 445 (650)
T ss_pred CcceEEEEecCCc-----------------ee-eecChh---------------------------------------hC
Confidence 9999995433210 11 112221 11
Q ss_pred CeeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCC
Q 004615 604 PVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKP 683 (742)
Q Consensus 604 pv~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~ 683 (742)
| |-+. -..+|||+..++|.+|+||+|.|+..++.|||...+|...+
T Consensus 446 p----------------~~~~------------------v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~ 491 (650)
T KOG0462|consen 446 P----------------DPSD------------------VKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYID 491 (650)
T ss_pred C----------------Cccc------------------chhhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceecc
Confidence 1 0000 02468999999999999999999999999999999999887
Q ss_pred CCeEEEEEEechhhhhc-hHHHhhccCCceEEEEEEeCccccC
Q 004615 684 GGLKVVDALVPLAEMFQ-YVSALRGMTKGRASYIMQLAKFDVV 725 (742)
Q Consensus 684 ~~~~~i~a~~P~~e~~g-y~~~Lrs~T~G~a~~~~~f~~y~~v 725 (742)
+++..|+..+|++|+.+ |...|+|.|+|+|+|.++|++|++-
T Consensus 492 ~nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~~s 534 (650)
T KOG0462|consen 492 GNRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQAS 534 (650)
T ss_pred CCeEEEEEecChHHHHHHHHHHHhccccceeEEeecccccccc
Confidence 68999999999999998 9999999999999999999999953
No 23
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=2e-76 Score=619.73 Aligned_cols=445 Identities=29% Similarity=0.484 Sum_probs=401.1
Q ss_pred CCccEEEEEeecccCccccc-------ceeccC----CccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 66 RSRRQFSVFAMAAEGRNYKI-------GEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~-------g~v~~g----~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
..+||||||+|++|||+|++ |....+ ..+||+...||||||||-+..+.+.|++++||++|||||.||.
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 46899999999999999954 333333 2899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAE 214 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~ 214 (742)
+||+|.|...||++|+|||.+|+.+||+.|++.|.+.|+++|+||||+||+.++.+++++++-+.|-.
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~------------ 150 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVE------------ 150 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999988887764410
Q ss_pred CcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 004615 215 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 294 (742)
Q Consensus 215 ~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~ 294 (742)
+ ..+|+.|
T Consensus 151 -------------------------------------------------L-~A~deQL---------------------- 158 (603)
T COG1217 151 -------------------------------------------------L-GATDEQL---------------------- 158 (603)
T ss_pred -------------------------------------------------h-CCChhhC----------------------
Confidence 0 0111111
Q ss_pred ccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEe
Q 004615 295 IAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 364 (742)
Q Consensus 295 ~~~~~~Pv~~~Sa~~~~----------gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 364 (742)
-+|++..||+.|. .+.+|++.|++++|.|.. +.++||.++|+-..+
T Consensus 159 ----dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~--------------------~~d~PlQ~qvt~Ldy 214 (603)
T COG1217 159 ----DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG--------------------DLDEPLQMQVTQLDY 214 (603)
T ss_pred ----CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEeecc
Confidence 2678888887653 478999999999999975 258999999999999
Q ss_pred cCCCceEEEEEEEeeEecCCCEEEeCCCC---ceEecceEEEeecCceeecccccCCCEEEEcCCCccccCceeecCCCc
Q 004615 365 DPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP 441 (742)
Q Consensus 365 ~~~~G~l~~~RV~sG~L~~gd~v~~~~~~---~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdTL~~~~~~ 441 (742)
++|+|++..+||++|++|+|+.|.....+ .+.||.+++-+.|-++.++++|.|||||+|+|+.++..|||+|++.++
T Consensus 215 n~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~ 294 (603)
T COG1217 215 NSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNP 294 (603)
T ss_pred ccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCc
Confidence 99999999999999999999999876543 346899999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCceEEEEEEeCCCc---------CHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHH
Q 004615 442 ILLERMDFPDPVIKVAIEPKTKA---------DIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLK 512 (742)
Q Consensus 442 ~~l~~i~~~~Pvv~~~Iep~~~~---------d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~ 512 (742)
..|+.+.+.+|.+++.+..+++. ...++.+.|.+-.+.+-+|+|+.-++-..+.++|.|||||-|+++.+|
T Consensus 295 ~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MR 374 (603)
T COG1217 295 EALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMR 374 (603)
T ss_pred cCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhh
Confidence 99999999999999999987764 367999999999999999999876666889999999999999999999
Q ss_pred hhcCeEEEEeCceeeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHH
Q 004615 513 REFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLE 592 (742)
Q Consensus 513 ~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~ 592 (742)
|| |.|+.+|.|+|.||| +.
T Consensus 375 RE-GfEl~VsrP~Vi~ke-id----------------------------------------------------------- 393 (603)
T COG1217 375 RE-GFELQVSRPEVIIKE-ID----------------------------------------------------------- 393 (603)
T ss_pred hc-ceEEEecCceEEEEe-cC-----------------------------------------------------------
Confidence 99 999999999999998 31
Q ss_pred HHHHcCcccCCCeeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcC
Q 004615 593 ECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSR 672 (742)
Q Consensus 593 ~a~~~Gpl~g~pv~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~r 672 (742)
-.++||+-.+.|.||++|+|.|+..|..|
T Consensus 394 ---------------------------------------------------G~~~EP~E~v~iDv~ee~~G~Vie~lg~R 422 (603)
T COG1217 394 ---------------------------------------------------GVKCEPFEEVTIDVPEEHQGAVIEKLGER 422 (603)
T ss_pred ---------------------------------------------------CcCcCcceeEEecCchhhhhHHHHHHhhh
Confidence 02359999999999999999999999999
Q ss_pred CceecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCCchHH
Q 004615 673 RGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQ 730 (742)
Q Consensus 673 rg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~ 730 (742)
+|...+|.+.+++++.+.+.+|.+-+.||.+++.++|+|.|.++..|+||+|+.+++.
T Consensus 423 Kgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i~ 480 (603)
T COG1217 423 KGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEIG 480 (603)
T ss_pred hHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccccccc
Confidence 9999999998878999999999999999999999999999999999999999988653
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.2e-76 Score=621.34 Aligned_cols=452 Identities=29% Similarity=0.454 Sum_probs=397.8
Q ss_pred CCccEEEEEeecccCccccccee-------ccC---CccCCCcHhHHhhcceEecceEEEEec-----CeEEEEEcCCCc
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEV-------HEG---TATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDTPGH 130 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v-------~~g---~~~~D~~~~E~erGITi~s~~~~~~~~-----~~~inlIDTPGh 130 (742)
+++||++||+|++|||||+..++ +.. +.++|+|+.||||||||++..+++.|+ .|.+||||||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 67999999999999999965443 332 489999999999999999999999995 399999999999
Q ss_pred cCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEec
Q 004615 131 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 131 ~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~P 210 (742)
+||+.||.|+|..|+||||||||+.|+++||..-.-+|.+.++-+|-||||+|++.+|.+++..+|.+.+|..+.
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~----- 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS----- 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876320
Q ss_pred cCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHH
Q 004615 211 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 290 (742)
Q Consensus 211 i~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l 290 (742)
T Consensus 162 -------------------------------------------------------------------------------- 161 (603)
T COG0481 162 -------------------------------------------------------------------------------- 161 (603)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCce
Q 004615 291 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 370 (742)
Q Consensus 291 ~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~ 370 (742)
-.+.+||++|.||+++|++|++.+|+|.. ++++|+.|++|..++|+|+|.
T Consensus 162 ----------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g--------------------~~~~pLkALifDS~yD~Y~GV 211 (603)
T COG0481 162 ----------DAVLVSAKTGIGIEDVLEAIVEKIPPPKG--------------------DPDAPLKALIFDSWYDNYLGV 211 (603)
T ss_pred ----------hheeEecccCCCHHHHHHHHHhhCCCCCC--------------------CCCCcceEEEEeccccccceE
Confidence 05568999999999999999999999975 258999999999999999999
Q ss_pred EEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE-cCCCc---cccCceeecCCCc--ccc
Q 004615 371 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL-AGLKD---TITGETLCDADHP--ILL 444 (742)
Q Consensus 371 l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I-~gl~~---~~tGdTL~~~~~~--~~l 444 (742)
++++||+.|++++||+|....+|++..|.++..+.. ...+.+++.||+++.+ +|+++ ++.|||++...++ .+|
T Consensus 212 v~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~L 290 (603)
T COG0481 212 VVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPL 290 (603)
T ss_pred EEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccC
Confidence 999999999999999999999999999999988775 6688999999999987 56654 7899999955443 568
Q ss_pred cccCCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeEE
Q 004615 445 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEA 519 (742)
Q Consensus 445 ~~i~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~~~v~v 519 (742)
++++-..|++++.+.|.+..|.+.|.+||.+|..+|-+|.++ +||.+.+-.| +|-|||||+.+||+|||++++
T Consensus 291 pGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E--~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldl 368 (603)
T COG0481 291 PGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDL 368 (603)
T ss_pred CCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeec--cccchhccCceeehhhhHHHHHHHHHHHHHhhCcce
Confidence 888889999999999999999999999999999999999998 4677765555 699999999999999999999
Q ss_pred EEeCceeeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCc
Q 004615 520 NVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGV 599 (742)
Q Consensus 520 ~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gp 599 (742)
..+.|.|.|+-..+.. +....=.|.
T Consensus 369 I~TaPsV~Y~v~~~~g------------------~~~~i~NPs------------------------------------- 393 (603)
T COG0481 369 ITTAPSVVYKVELTDG------------------EEIEVDNPS------------------------------------- 393 (603)
T ss_pred EecCCceEEEEEEcCC------------------cEEEecChH-------------------------------------
Confidence 9999999999765431 111111221
Q ss_pred ccCCCeeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceeccc
Q 004615 600 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSF 679 (742)
Q Consensus 600 l~g~pv~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~ 679 (742)
.+| +-+.. -.+.||+.+++|.+|++|+|.||..++.+||...++
T Consensus 394 --~~P----------------~~~~I------------------~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m 437 (603)
T COG0481 394 --DLP----------------DPNKI------------------EEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDM 437 (603)
T ss_pred --hCC----------------Chhhh------------------heeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecc
Confidence 111 10000 257899999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEechhhh-hchHHHhhccCCceEEEEEEeCccccCC
Q 004615 680 GDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVVP 726 (742)
Q Consensus 680 ~~~~~~~~~i~a~~P~~e~-~gy~~~Lrs~T~G~a~~~~~f~~y~~v~ 726 (742)
++.+.+++.+.+.+|++|+ ++|.+.|+|.|+|+|||.++|.+|++-.
T Consensus 438 ~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~ 485 (603)
T COG0481 438 EYLDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRESD 485 (603)
T ss_pred eEecCceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccccc
Confidence 9887678999999999997 7999999999999999999999999754
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-65 Score=534.76 Aligned_cols=428 Identities=29% Similarity=0.486 Sum_probs=361.6
Q ss_pred CCccEEEEEeecccCccc-------------ccceeccCC----ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCC
Q 004615 66 RSRRQFSVFAMAAEGRNY-------------KIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 128 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~-------------~~g~v~~g~----~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTP 128 (742)
.+.|++|||.|+++||+| ..|.|.... +.+|||+.||+|||||.|++.+|.|+++.|||+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 356999999999999998 466665432 899999999999999999999999999999999999
Q ss_pred CccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEE
Q 004615 129 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 208 (742)
Q Consensus 129 Gh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~ 208 (742)
||.||+..++|.|..+|.||+||||..|+++||+.+++-|+.+++|++-|||||||.+-+.-+++++|.+.|+..+.|++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcceeeeecccceEEEecCCCCCceeE---eecCch-hHH-----HHHHHHHHH--HH-HHHHccCHHHHHHHh
Q 004615 209 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFA---YEDIPA-NLQ-----KMAQEYRSQ--MI-ETIVELDDEAMESYL 276 (742)
Q Consensus 209 ~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~---~~~i~~-~~~-----~~~~~~r~~--l~-e~~~e~dd~lle~yl 276 (742)
||||.+..|+|++|+.+.....|.+...+.... ...+.. ++. +...+++++ |+ ++-.++|.
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~------- 242 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDL------- 242 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCH-------
Confidence 999999999999999999888887643222221 111111 111 111122221 11 11122221
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeE
Q 004615 277 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFA 356 (742)
Q Consensus 277 ~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 356 (742)
.+...+...|||+|||++|.||+.+|+.++++.|+|..++...+ ...+ .+..|.
T Consensus 243 ---------------~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~----------~v~p-~e~kfs 296 (528)
T COG4108 243 ---------------EAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTR----------EVEP-TEDKFS 296 (528)
T ss_pred ---------------HHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcC----------cccC-CCCccc
Confidence 23345778999999999999999999999999999987654221 1111 244599
Q ss_pred EEEEEEEe---cCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCc
Q 004615 357 GLAFKIMS---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 433 (742)
Q Consensus 357 ~~V~k~~~---~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGd 433 (742)
+||||+.. .+++.+++|.||.||.+.+|+++...++|+..+++.-..+++++++.+++|.||||++|..-..+..||
T Consensus 297 GFVFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGD 376 (528)
T COG4108 297 GFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGD 376 (528)
T ss_pred eEEEEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecc
Confidence 99999975 356899999999999999999999999999999999999999999999999999999997655689999
Q ss_pred eeecCCCcccccccCCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHh
Q 004615 434 TLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKR 513 (742)
Q Consensus 434 TL~~~~~~~~l~~i~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~ 513 (742)
|++.. ....+++++...|-++..|..+++....+|.++|.+|++|- .+++.....+++.++...|.||+||+.+||++
T Consensus 377 T~t~G-e~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEG-avQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~ 454 (528)
T COG4108 377 TFTEG-EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEG-AVQVFKPLDGNDLILGAVGQLQFEVVQARLKN 454 (528)
T ss_pred eeecC-ceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcC-eeEEEecCCCCCceEEeeeeeehHHHHHHHHh
Confidence 99986 67788898888999999999999999999999999999997 66777766789999999999999999999999
Q ss_pred hcCeEEEEeCceeeE
Q 004615 514 EFKVEANVGAPQVNY 528 (742)
Q Consensus 514 ~~~v~v~~~~p~V~y 528 (742)
||++++.+.+..+..
T Consensus 455 EY~ve~~~e~~~~~~ 469 (528)
T COG4108 455 EYNVEAVFEPVNFST 469 (528)
T ss_pred hhCCeEEEeeccceE
Confidence 999999987665443
No 26
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=5.9e-53 Score=441.84 Aligned_cols=257 Identities=68% Similarity=1.103 Sum_probs=247.2
Q ss_pred EEEEEeecccCccc-------------ccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHH
Q 004615 70 QFSVFAMAAEGRNY-------------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 136 (742)
Q Consensus 70 ni~iiGh~~~Gk~~-------------~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~e 136 (742)
||+++||+++|||| ++|++++|++++|+.++|++||+|++++..++.|+++++||||||||.||..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 79999999999997 34567888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCc
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 216 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~ 216 (742)
+.++++.+|++|+|||+.+|++.||+.+|+.+.+.++|+++|+||||+.+++++++++++++.++..+++.++|++....
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 004615 217 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 296 (742)
Q Consensus 217 f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~ 296 (742)
|.|+||++.+++|.|... .|..+...++|+++.+.+.++|+.|+|.+||.||+|||+||+|++++.+++.+.+++++++
T Consensus 161 f~g~vd~~~~~a~~~~~~-~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~ 239 (270)
T cd01886 161 FRGVVDLIEMKALYWDGE-LGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGTIA 239 (270)
T ss_pred ceEEEEccccEEEecccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999443 3667888899999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 004615 297 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 327 (742)
Q Consensus 297 ~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP 327 (742)
+.++|||||||.++.|++.|||.|++++|+|
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=4.3e-48 Score=404.80 Aligned_cols=250 Identities=34% Similarity=0.532 Sum_probs=230.2
Q ss_pred CccEEEEEeecccCcccc-------------cceec----cCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCC
Q 004615 67 SRRQFSVFAMAAEGRNYK-------------IGEVH----EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 129 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~-------------~g~v~----~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPG 129 (742)
++|||+|+||+++||||+ .|.++ .|++++|+.++|++||+|+.++..++.|++++||||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 469999999999999983 34444 5889999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEe
Q 004615 130 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 209 (742)
Q Consensus 130 h~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~ 209 (742)
|.||..++.++++.+|++|+|+|+..|++.||+.+|+++...++|+++|+||||+..+++.++++++++.|+..++++|+
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHH
Q 004615 210 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 289 (742)
Q Consensus 210 Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~ 289 (742)
|++.+..|.|++|++.+++|.|.....+......++|+++. |.+++.||+|||+|+++++++.+++.+.
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 99999999999999999999994322222345556676543 7899999999999999999999999999
Q ss_pred HHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 004615 290 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 327 (742)
Q Consensus 290 l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP 327 (742)
++++++++.++|||||||++|.|++.|||+|++++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
No 28
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=1.7e-45 Score=387.69 Aligned_cols=255 Identities=42% Similarity=0.701 Sum_probs=243.7
Q ss_pred EEEEEeecccCcccc-------------cceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHH
Q 004615 70 QFSVFAMAAEGRNYK-------------IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 136 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~-------------~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~e 136 (742)
||+++||+++||||+ .|+++.|++++|+.++|++||+|+.++...+.|+++.++|||||||.||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 799999999999973 3566788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCc
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 216 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~ 216 (742)
+.++++.+|++|+|+|+..|+..||+.+|+++...++|.++|+||||+..++++++++++++.++.+++++++|++.+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~ 160 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDD 160 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 004615 217 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 296 (742)
Q Consensus 217 f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~ 296 (742)
|.|++|++.++++.|.+ |......++|+++.+.+.++|+.|+|.+++.||+|||+||++++++++++.+.+++++.+
T Consensus 161 ~~~~vd~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~ 237 (268)
T cd04170 161 FKGVVDLLTEKAYIYSP---GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRA 237 (268)
T ss_pred eeEEEEcccCEEEEccC---CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999964 334566789999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 004615 297 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 327 (742)
Q Consensus 297 ~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP 327 (742)
+.++||+||||+++.|++.|||++.+++|+|
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998
No 29
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=7.2e-45 Score=374.45 Aligned_cols=224 Identities=37% Similarity=0.608 Sum_probs=208.7
Q ss_pred EEEEEeecccCccc-------------ccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHH
Q 004615 70 QFSVFAMAAEGRNY-------------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 136 (742)
Q Consensus 70 ni~iiGh~~~Gk~~-------------~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~e 136 (742)
||+++||+++|||| +.|++++|++++|+.++|++||+|+.++..++.|+++++||+|||||.||..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 79999999999997 45777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCc
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 216 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~ 216 (742)
+.++++.+|++|+|+|+.+|++.||+.+|+++.+.++|+++|+||+|+.++++++++++|+++|+.+++|+|+|+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~----- 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG----- 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 004615 217 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 296 (742)
Q Consensus 217 f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~ 296 (742)
+++.+. . ..++++.|+|.+||.||+|||+||+|++++++++.+++++++..
T Consensus 156 ---~~~~~~---------------~-----------~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~ 206 (237)
T cd04168 156 ---LAPNIC---------------E-----------TNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK 206 (237)
T ss_pred ---Eeeeee---------------e-----------eeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 121100 0 11335789999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 004615 297 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 327 (742)
Q Consensus 297 ~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP 327 (742)
+.++|||||||+++.|++.|||+|++++|+|
T Consensus 207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 207 RKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred CCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 30
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.4e-38 Score=347.97 Aligned_cols=262 Identities=25% Similarity=0.404 Sum_probs=216.5
Q ss_pred CCccEEEEEeecccCcccccceecc-----C------CccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE-----G------TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~-----g------~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
...+||+++||++|||||++|.+.. | .+.+|.+++|++||+|++++...+.+++++++|||||||.+|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 4469999999999999998887732 1 2479999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 213 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~ 213 (742)
.++.++++.+|++++|||+.+|++.||+++|+++...++|. |+++||||+...+ +..+.+.
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~--~~~~~i~---------------- 151 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE--ELLELVE---------------- 151 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH--HHHHHHH----------------
Confidence 99999999999999999999999999999999999999995 6899999986321 1111111
Q ss_pred CCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 004615 214 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 293 (742)
Q Consensus 214 ~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~ 293 (742)
+++...++..
T Consensus 152 ----------------------------------------------------------------------~~i~~~l~~~ 161 (394)
T PRK12736 152 ----------------------------------------------------------------------MEVRELLSEY 161 (394)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHh
Confidence 1122222222
Q ss_pred cccCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEec
Q 004615 294 TIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 365 (742)
Q Consensus 294 ~~~~~~~Pv~~~Sa~~~~--------gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 365 (742)
......+|++++||++|. ++..|++.+.+++|.|.. . .++||+++|++++..
T Consensus 162 ~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~-------~-------------~~~p~r~~I~~~~~~ 221 (394)
T PRK12736 162 DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPER-------D-------------TDKPFLMPVEDVFTI 221 (394)
T ss_pred CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCC-------C-------------CCCCeEEEEEEEEec
Confidence 222335789999999983 689999999999998754 1 368999999999999
Q ss_pred CCCceEEEEEEEeeEecCCCEEEeCCC--CceEecceEEEeecCceeecccccCCCEEEE--cCCC--ccccCceeecCC
Q 004615 366 PFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDAD 439 (742)
Q Consensus 366 ~~~G~l~~~RV~sG~L~~gd~v~~~~~--~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~~~tGdTL~~~~ 439 (742)
++.|.+++|||++|+|+.||.|++.+. +...+|++|... ..++++|.|||++++ .|++ ++.+|++||+++
T Consensus 222 ~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 222 TGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred CCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 999999999999999999999998765 556789998753 368999999999976 6764 488999999875
No 31
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=2.2e-37 Score=343.94 Aligned_cols=262 Identities=24% Similarity=0.392 Sum_probs=213.9
Q ss_pred CCccEEEEEeecccCcccccceecc-----------CCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE-----------GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~-----------g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
...+||+++||+++||||++|++-. +.+.+|++++||+||+|++++...+.|++++++|+|||||.+|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 4568999999999999998777632 12578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCC-eEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 213 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip-~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~ 213 (742)
.++.++++.+|+|++||||.+|++.||+++++++...++| .|+++||||+...+ +..+.+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~--~~~~~~~---------------- 151 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE--ELLELVE---------------- 151 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH--HHHHHHH----------------
Confidence 9999999999999999999999999999999999999999 56899999986421 1111111
Q ss_pred CCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 004615 214 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 293 (742)
Q Consensus 214 ~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~ 293 (742)
+++...++..
T Consensus 152 ----------------------------------------------------------------------~~l~~~l~~~ 161 (409)
T CHL00071 152 ----------------------------------------------------------------------LEVRELLSKY 161 (409)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHh
Confidence 1222223322
Q ss_pred cccCcceeeeeccccCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCe
Q 004615 294 TIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPF 355 (742)
Q Consensus 294 ~~~~~~~Pv~~~Sa~~~~------------------gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 355 (742)
......+|++++||++|. ++..||++|.+++|+|.. + .+.||
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~-------~-------------~~~p~ 221 (409)
T CHL00071 162 DFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPER-------D-------------TDKPF 221 (409)
T ss_pred CCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCC-------C-------------CCCCE
Confidence 222234688888888775 367899999999988754 1 36899
Q ss_pred EEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCC--CCceEecceEEEeecCceeecccccCCCEEEE--cCCC--cc
Q 004615 356 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 429 (742)
Q Consensus 356 ~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~--~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~~ 429 (742)
+++|++++..++.|.+++|||++|+++.||.|...+ .+...+|++|.... +++++|.|||+|++ .|++ ++
T Consensus 222 r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~~~i 297 (409)
T CHL00071 222 LMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQKEDI 297 (409)
T ss_pred EEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcC----cCCCEECCCceeEEEEcCCCHHHc
Confidence 999999999999999999999999999999998643 35667899987532 57899999999976 4654 48
Q ss_pred ccCceeecCC
Q 004615 430 ITGETLCDAD 439 (742)
Q Consensus 430 ~tGdTL~~~~ 439 (742)
++||+|++++
T Consensus 298 ~~G~vl~~~~ 307 (409)
T CHL00071 298 ERGMVLAKPG 307 (409)
T ss_pred CCeEEEecCC
Confidence 8999999875
No 32
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.1e-36 Score=337.31 Aligned_cols=262 Identities=25% Similarity=0.395 Sum_probs=213.7
Q ss_pred CCccEEEEEeecccCcccccceecc-----C------CccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE-----G------TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~-----g------~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
+..+||+++||++|||||++|.+-. | .+++|.+++|++||+|++++...+.+++++++|||||||.+|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 3468999999999999998887631 1 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 213 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~ 213 (742)
.++.++++.+|++++|||+.+|+..||+++|..+...++|.+ +++||||+...+ +..+.+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~~~---------------- 151 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVE---------------- 151 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH--HHHHHHH----------------
Confidence 999999999999999999999999999999999999999987 689999986421 1111111
Q ss_pred CCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 004615 214 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 293 (742)
Q Consensus 214 ~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~ 293 (742)
+++.+.++..
T Consensus 152 ----------------------------------------------------------------------~~i~~~l~~~ 161 (394)
T TIGR00485 152 ----------------------------------------------------------------------MEVRELLSEY 161 (394)
T ss_pred ----------------------------------------------------------------------HHHHHHHHhc
Confidence 0111122211
Q ss_pred cccCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEec
Q 004615 294 TIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 365 (742)
Q Consensus 294 ~~~~~~~Pv~~~Sa~~~~--------gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 365 (742)
......+|++++||+++. ++..||++|.+++|.|.. . .++||+++|++++..
T Consensus 162 ~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~-------~-------------~~~p~r~~V~~vf~~ 221 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER-------E-------------TDKPFLMPIEDVFSI 221 (394)
T ss_pred CCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC-------C-------------CCCCeEEEEEEEEee
Confidence 112234789999999875 467899999998887754 1 368999999999999
Q ss_pred CCCceEEEEEEEeeEecCCCEEEeCC--CCceEecceEEEeecCceeecccccCCCEEEE--cCCC--ccccCceeecCC
Q 004615 366 PFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDAD 439 (742)
Q Consensus 366 ~~~G~l~~~RV~sG~L~~gd~v~~~~--~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~~~tGdTL~~~~ 439 (742)
++.|.+++|||.+|+|++||.|+..+ .++..+|++|... ..++++|.|||++++ .|++ +++.|++||+++
T Consensus 222 ~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 222 TGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred CCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 99999999999999999999999765 3567789998753 367899999999987 6663 488999999864
No 33
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1e-36 Score=340.44 Aligned_cols=258 Identities=25% Similarity=0.293 Sum_probs=213.7
Q ss_pred CccEEEEEeecccCcccccceec----------------------cCC----ccCCCcHhHHhhcceEecceEEEEecCe
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVH----------------------EGT----ATMDWMEQEQERGITITSAATTTYWNKH 120 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~----------------------~g~----~~~D~~~~E~erGITi~s~~~~~~~~~~ 120 (742)
...||+++||+++||||++|.+- .|+ +++|+.++|++||+||+.+...+.|+++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 45899999999999999877541 122 4799999999999999999999999999
Q ss_pred EEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCC-------cccHHHHHHHHHHcCCCe-EEEEecccCCCC-----
Q 004615 121 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLGA----- 187 (742)
Q Consensus 121 ~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv-------~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~----- 187 (742)
+|||||||||.||..++.++++.+|+||+||||.+|+ ++||+++|+++..+|+|. |++|||||+...
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~ 165 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQE 165 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHH
Confidence 9999999999999999999999999999999999998 589999999999999997 589999996542
Q ss_pred ChHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHcc
Q 004615 188 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 267 (742)
Q Consensus 188 ~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~ 267 (742)
+++++.+++++.|+.
T Consensus 166 ~~~~i~~~i~~~l~~----------------------------------------------------------------- 180 (446)
T PTZ00141 166 RYDEIKKEVSAYLKK----------------------------------------------------------------- 180 (446)
T ss_pred HHHHHHHHHHHHHHh-----------------------------------------------------------------
Confidence 345555555544321
Q ss_pred CHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCC
Q 004615 268 DDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKG 335 (742)
Q Consensus 268 dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~------------~LLd~I~~~lPsP~~~~~~~~ 335 (742)
.......+|++++||++|.|+. .|+++|... +.|..
T Consensus 181 -------------------------~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~------ 228 (446)
T PTZ00141 181 -------------------------VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKR------ 228 (446)
T ss_pred -------------------------cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCc------
Confidence 1111123689999999999985 488988654 44432
Q ss_pred CCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccc
Q 004615 336 TDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVA 415 (742)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a 415 (742)
. .+.||++.|..++..++.|+++.|||.+|+|+.||.|...+.+...+|++|...+ .++++|
T Consensus 229 -~-------------~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~----~~~~~a 290 (446)
T PTZ00141 229 -P-------------VDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHH----EQLAEA 290 (446)
T ss_pred -C-------------CCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecC----cccCEE
Confidence 1 3689999999999999999999999999999999999999988888999987543 679999
Q ss_pred cCCCEEEE--cCCC--ccccCceeecCC
Q 004615 416 LAGDIIAL--AGLK--DTITGETLCDAD 439 (742)
Q Consensus 416 ~aGdIv~I--~gl~--~~~tGdTL~~~~ 439 (742)
.|||.+++ .+++ ++.+|++||+..
T Consensus 291 ~aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 291 VPGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred CCCCEEEEEECCCCHHHcCCceEEecCC
Confidence 99999998 3432 378999999864
No 34
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.8e-36 Score=353.72 Aligned_cols=312 Identities=23% Similarity=0.328 Sum_probs=253.3
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
.+.++|+|+||+++|||+++..+..++ +. ....+|||+.....++.|+++.|+|||||||.+|...+.++++.+|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~----~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aD 362 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN-VA----AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTD 362 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-cc----ccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCC
Confidence 467899999999999999888775433 21 1235899999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCcceeeeeccc
Q 004615 146 GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVK 225 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~ 225 (742)
++|||||+.+|+.+||+++|+++...++|+|+++||||+..++++++..++.+ ++..
T Consensus 363 iaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~-~~~~---------------------- 419 (787)
T PRK05306 363 IVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSE-YGLV---------------------- 419 (787)
T ss_pred EEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHH-hccc----------------------
Confidence 99999999999999999999999999999999999999988776666555543 1100
Q ss_pred ceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeec
Q 004615 226 MKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCG 305 (742)
Q Consensus 226 ~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~ 305 (742)
.+.| +..+|++++
T Consensus 420 ----------------------------------------------~e~~---------------------g~~vp~vpv 432 (787)
T PRK05306 420 ----------------------------------------------PEEW---------------------GGDTIFVPV 432 (787)
T ss_pred ----------------------------------------------HHHh---------------------CCCceEEEE
Confidence 0000 223689999
Q ss_pred cccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCC
Q 004615 306 SAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGS 385 (742)
Q Consensus 306 Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd 385 (742)
||++|.|++.|+++|...... .+ ..++++.|+.++||+++.+++.|.++++||++|+|+.||
T Consensus 433 SAktG~GI~eLle~I~~~~e~-~~-----------------l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd 494 (787)
T PRK05306 433 SAKTGEGIDELLEAILLQAEV-LE-----------------LKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGD 494 (787)
T ss_pred eCCCCCCchHHHHhhhhhhhh-hh-----------------cccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCC
Confidence 999999999999999763210 00 123468899999999999999999999999999999999
Q ss_pred EEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCcc-ccCceeecCCCc-----------------------
Q 004615 386 YVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP----------------------- 441 (742)
Q Consensus 386 ~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~-~tGdTL~~~~~~----------------------- 441 (742)
.|++.+ +.++|+.|++....++++|.|||+|.|.||+++ .+||||+...+.
T Consensus 495 ~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~ 569 (787)
T PRK05306 495 IVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQ 569 (787)
T ss_pred EEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999853 467888888877789999999999999999997 999999843211
Q ss_pred -ccccccCCC--C---ceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHH
Q 004615 442 -ILLERMDFP--D---PVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHL 504 (742)
Q Consensus 442 -~~l~~i~~~--~---Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHL 504 (742)
..++.+..+ . +.+.+.|++...+..+.|..+|.+|..+++.+.+- -.|.|.+.-
T Consensus 570 ~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~---------~~~vG~it~ 629 (787)
T PRK05306 570 RVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNII---------HSGVGAITE 629 (787)
T ss_pred ccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEE---------eeccCCCCH
Confidence 223332111 1 26899999999999999999999999999888763 466777643
No 35
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.5e-36 Score=338.98 Aligned_cols=258 Identities=24% Similarity=0.298 Sum_probs=211.9
Q ss_pred CccEEEEEeecccCccccccee-------c------------cC-------CccCCCcHhHHhhcceEecceEEEEecCe
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEV-------H------------EG-------TATMDWMEQEQERGITITSAATTTYWNKH 120 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v-------~------------~g-------~~~~D~~~~E~erGITi~s~~~~~~~~~~ 120 (742)
...||+++||++|||||++|++ + .+ .++||+.++||+|||||+.+...|.|+++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 3589999999999999987654 1 11 36899999999999999999999999999
Q ss_pred EEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCC-------cccHHHHHHHHHHcCCCe-EEEEecccCCC-----C
Q 004615 121 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLG-----A 187 (742)
Q Consensus 121 ~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv-------~~qT~~v~~~a~~~~ip~-il~INK~Dr~~-----~ 187 (742)
++||||||||.||..++.++++.+|+||+||||.+|. ..||+++|.++...|+|. |+++||||+.. .
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~ 165 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKA 165 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHH
Confidence 9999999999999999999999999999999999983 389999999999999976 77899999872 2
Q ss_pred ChHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHcc
Q 004615 188 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 267 (742)
Q Consensus 188 ~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~ 267 (742)
+|+++++++++.++.
T Consensus 166 ~~~~i~~ei~~~l~~----------------------------------------------------------------- 180 (447)
T PLN00043 166 RYDEIVKEVSSYLKK----------------------------------------------------------------- 180 (447)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 344455555443321
Q ss_pred CHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCC
Q 004615 268 DDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKG 335 (742)
Q Consensus 268 dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~------------~LLd~I~~~lPsP~~~~~~~~ 335 (742)
......-+|++++||++|.|+. .||++|.+ +|.|..
T Consensus 181 -------------------------~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~------ 228 (447)
T PLN00043 181 -------------------------VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKR------ 228 (447)
T ss_pred -------------------------cCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCcc------
Confidence 1111112478888999998873 48888865 555533
Q ss_pred CCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccc
Q 004615 336 TDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVA 415 (742)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a 415 (742)
. .+.||++.|..++..++.|+++.|||.+|+|++||+|...+.+...+|++|... ..++++|
T Consensus 229 -~-------------~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~----~~~v~~a 290 (447)
T PLN00043 229 -P-------------SDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH----HESLQEA 290 (447)
T ss_pred -c-------------cCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC----CeEeCEe
Confidence 1 368999999999999999999999999999999999999998888899999753 3789999
Q ss_pred cCCCEEEE--cCC--CccccCceeecCC
Q 004615 416 LAGDIIAL--AGL--KDTITGETLCDAD 439 (742)
Q Consensus 416 ~aGdIv~I--~gl--~~~~tGdTL~~~~ 439 (742)
.|||.+++ .++ +++.+|++||+..
T Consensus 291 ~aGd~v~i~l~~~~~~~i~rG~vl~~~~ 318 (447)
T PLN00043 291 LPGDNVGFNVKNVAVKDLKRGYVASNSK 318 (447)
T ss_pred cCCCeEEEEECCCCHhhCCCccEEccCC
Confidence 99999998 444 3478999999863
No 36
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.6e-36 Score=333.74 Aligned_cols=260 Identities=25% Similarity=0.349 Sum_probs=214.3
Q ss_pred CCccEEEEEeecccCcccccceecc-----------CCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE-----------GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~-----------g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
+...||+++||++|||||++|.+-. +.+.+|+.++|++||+|++++...+.|++++|+|||||||.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 4568999999999999998887643 12479999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCCCC--hHHHHHHHHHHhCCcceEEEecc
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVVQLPV 211 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~--~~~~~~~i~~~l~~~~~~~~~Pi 211 (742)
.++.+++..+|++++|||+.+|++.||+++|+++...++|.+ +++||||+...+ ++.+.+++++
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~------------- 156 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRE------------- 156 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHH-------------
Confidence 999999999999999999999999999999999999999986 689999986421 1111112222
Q ss_pred CCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHH
Q 004615 212 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 291 (742)
Q Consensus 212 ~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~ 291 (742)
.+.
T Consensus 157 -----------------------------------------------------------------------------~l~ 159 (396)
T PRK00049 157 -----------------------------------------------------------------------------LLS 159 (396)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 122
Q ss_pred hhcccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEE
Q 004615 292 KGTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 361 (742)
Q Consensus 292 ~~~~~~~~~Pv~~~Sa~~~~----------gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 361 (742)
........+|++++||+++. |+..||++|.+++|.|.. . .++||.+.|..
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~-------~-------------~~~p~r~~I~~ 219 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPER-------A-------------IDKPFLMPIED 219 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCC-------C-------------CCCCeEEEEEE
Confidence 11111234688889998864 678999999999987754 1 37899999999
Q ss_pred EEecCCCceEEEEEEEeeEecCCCEEEeCCC--CceEecceEEEeecCceeecccccCCCEEEE--cCCC--ccccCcee
Q 004615 362 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 435 (742)
Q Consensus 362 ~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~--~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~~~tGdTL 435 (742)
++..++.|.++.|||.+|++++||+|+..+. ++..+|++|...+ +++++|.|||.+++ .|++ ++..|++|
T Consensus 220 ~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~----~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl 295 (396)
T PRK00049 220 VFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFR----KLLDEGQAGDNVGALLRGIKREDVERGQVL 295 (396)
T ss_pred EEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECC----cEeCEEcCCCEEEEEeCCCCHHHCCcceEE
Confidence 9999999999999999999999999987654 5677899987542 67999999999998 5653 48899999
Q ss_pred ecCC
Q 004615 436 CDAD 439 (742)
Q Consensus 436 ~~~~ 439 (742)
|+++
T Consensus 296 ~~~~ 299 (396)
T PRK00049 296 AKPG 299 (396)
T ss_pred ecCC
Confidence 9875
No 37
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.4e-36 Score=332.23 Aligned_cols=262 Identities=24% Similarity=0.366 Sum_probs=214.4
Q ss_pred CCccEEEEEeecccCcccccceecc-----------CCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE-----------GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~-----------g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
....||+++||++|||||++|.+-. ..+.+|..++|++||||++++...+.+++.+++|||||||.+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 3468999999999999999887743 12579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 213 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~ 213 (742)
.++.+++..+|++++|||+.+|+..||+++|..+...++|.| +++||||+...+ +..+.+.+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~--~~~~~~~~--------------- 152 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM--------------- 152 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH--HHHHHHHH---------------
Confidence 999999999999999999999999999999999999999987 579999986311 11111110
Q ss_pred CCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 004615 214 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 293 (742)
Q Consensus 214 ~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~ 293 (742)
++...++..
T Consensus 153 -----------------------------------------------------------------------ei~~~l~~~ 161 (396)
T PRK12735 153 -----------------------------------------------------------------------EVRELLSKY 161 (396)
T ss_pred -----------------------------------------------------------------------HHHHHHHHc
Confidence 111111111
Q ss_pred cccCcceeeeeccccCC----------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEE
Q 004615 294 TIAGSFVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 363 (742)
Q Consensus 294 ~~~~~~~Pv~~~Sa~~~----------~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 363 (742)
......+|++++||++| .|+..|+++|.+.+|.|.. . .++||+++|..++
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~-------~-------------~~~p~r~~I~~~f 221 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPER-------A-------------IDKPFLMPIEDVF 221 (396)
T ss_pred CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCc-------c-------------CCCCeEEEEEEEE
Confidence 11122468889999988 4788999999999997754 1 3789999999999
Q ss_pred ecCCCceEEEEEEEeeEecCCCEEEeCCC--CceEecceEEEeecCceeecccccCCCEEEE--cCCC--ccccCceeec
Q 004615 364 SDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCD 437 (742)
Q Consensus 364 ~~~~~G~l~~~RV~sG~L~~gd~v~~~~~--~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~~~tGdTL~~ 437 (742)
..++.|.++.|||.+|+|++||+|+..+. ++..+|++|... .+++++|.|||.+++ .|++ +++.|++||+
T Consensus 222 ~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~ 297 (396)
T PRK12735 222 SISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQVLAK 297 (396)
T ss_pred ecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcceEEEc
Confidence 99999999999999999999999997764 456788888643 378999999999998 5664 4889999998
Q ss_pred CC
Q 004615 438 AD 439 (742)
Q Consensus 438 ~~ 439 (742)
++
T Consensus 298 ~~ 299 (396)
T PRK12735 298 PG 299 (396)
T ss_pred CC
Confidence 75
No 38
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=8.6e-36 Score=333.91 Aligned_cols=261 Identities=24% Similarity=0.346 Sum_probs=211.3
Q ss_pred CCCccEEEEEeecccCcccccceec-----------cCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEVH-----------EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v~-----------~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF 133 (742)
....+||+++||+++||||++|++- .+..++|+.++|++|||||+++...|.|++++++|||||||.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3567999999999999999877653 23367999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCC-eEEEEecccCCCCC--hHHHHHHHHHHhCCcceEEEec
Q 004615 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 134 ~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip-~il~INK~Dr~~~~--~~~~~~~i~~~l~~~~~~~~~P 210 (742)
..++.++++.+|+|++||||.+|++.||+++|+++..+++| .|+++||||+...+ ++.+.+++++.|
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l---------- 227 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL---------- 227 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH----------
Confidence 99999999999999999999999999999999999999999 46899999986421 112222333222
Q ss_pred cCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHH
Q 004615 211 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 290 (742)
Q Consensus 211 i~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l 290 (742)
T Consensus 228 -------------------------------------------------------------------------------- 227 (478)
T PLN03126 228 -------------------------------------------------------------------------------- 227 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcccCcceeeeeccccCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCC
Q 004615 291 RKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDD 352 (742)
Q Consensus 291 ~~~~~~~~~~Pv~~~Sa~~~~------------------gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (742)
++.......+|++++||+++. ++..||+.|.++.|.|.. . .+
T Consensus 228 ~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r-------~-------------~~ 287 (478)
T PLN03126 228 SSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQR-------Q-------------TD 287 (478)
T ss_pred HhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCC-------c-------------cc
Confidence 211111223566666666552 256799999998876644 1 36
Q ss_pred CCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCC--ceEecceEEEeecCceeecccccCCCEEEE--cCCC-
Q 004615 353 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 427 (742)
Q Consensus 353 ~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~--~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~- 427 (742)
.||+++|..++..+++|.++.|+|.+|+|++||.|+..+.+ ...+|++|... ..++++|.|||.+++ .|++
T Consensus 288 ~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~ 363 (478)
T PLN03126 288 LPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQK 363 (478)
T ss_pred cceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcH
Confidence 89999999999999999999999999999999999987654 45678888644 278999999999998 5554
Q ss_pred -ccccCceeecCC
Q 004615 428 -DTITGETLCDAD 439 (742)
Q Consensus 428 -~~~tGdTL~~~~ 439 (742)
++..|++||+++
T Consensus 364 ~di~rG~VL~~~~ 376 (478)
T PLN03126 364 ADIQRGMVLAKPG 376 (478)
T ss_pred HHcCCccEEecCC
Confidence 388999999875
No 39
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-36 Score=313.96 Aligned_cols=259 Identities=25% Similarity=0.346 Sum_probs=214.4
Q ss_pred CccEEEEEeecccCccccccee--ccC------------------------CccCCCcHhHHhhcceEecceEEEEecCe
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEV--HEG------------------------TATMDWMEQEQERGITITSAATTTYWNKH 120 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v--~~g------------------------~~~~D~~~~E~erGITi~s~~~~~~~~~~ 120 (742)
...|++++||++|||+|.+|++ +.| .++||.+++|||||+||+.+..+|+.+.+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 3489999999999999987775 222 38999999999999999999999999999
Q ss_pred EEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCC-------CcccHHHHHHHHHHcCCCe-EEEEecccCCCCC---h
Q 004615 121 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN---F 189 (742)
Q Consensus 121 ~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~G-------v~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~---~ 189 (742)
.++|+|||||.||..+|+.+..++|.|||||||..| +++||++++-.++..|+.. |++|||||...+| |
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf 165 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF 165 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH
Confidence 999999999999999999999999999999999999 9999999999999999988 5899999998866 3
Q ss_pred HHHHHHHHH---HhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHc
Q 004615 190 FRTRDMIVT---NLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 266 (742)
Q Consensus 190 ~~~~~~i~~---~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e 266 (742)
+++.+++.. .+|.++
T Consensus 166 ~ei~~~v~~l~k~~G~~~-------------------------------------------------------------- 183 (428)
T COG5256 166 EEIVSEVSKLLKMVGYNP-------------------------------------------------------------- 183 (428)
T ss_pred HHHHHHHHHHHHHcCCCc--------------------------------------------------------------
Confidence 334333333 112211
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 004615 267 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 334 (742)
Q Consensus 267 ~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~------------~LLd~I~~~lPsP~~~~~~~ 334 (742)
.-+|.+++||++|.|+. .||++|. .+..|..
T Consensus 184 -------------------------------~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~----- 226 (428)
T COG5256 184 -------------------------------KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPER----- 226 (428)
T ss_pred -------------------------------cCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCC-----
Confidence 12345556777776653 5788876 5555544
Q ss_pred CCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeeccc
Q 004615 335 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 414 (742)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~ 414 (742)
+ -+.||++-|..++...+.|.+..+||.+|.|++||+|+..+.+....|+++..- .++++.
T Consensus 227 --~-------------~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~----~~~~~~ 287 (428)
T COG5256 227 --P-------------LDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH----HEEISQ 287 (428)
T ss_pred --C-------------CCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec----cccccc
Confidence 1 389999999999998888999999999999999999999999988889988643 478999
Q ss_pred ccCCCEEEE--cCC--CccccCceeecCCCccc
Q 004615 415 ALAGDIIAL--AGL--KDTITGETLCDADHPIL 443 (742)
Q Consensus 415 a~aGdIv~I--~gl--~~~~tGdTL~~~~~~~~ 443 (742)
+.+||.+.+ .|+ ++++.||.++++++++.
T Consensus 288 a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t 320 (428)
T COG5256 288 AEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPT 320 (428)
T ss_pred CCCCCeEEEEecCCchhccCCccEeccCCCCcc
Confidence 999999987 454 34999999998877654
No 40
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.3e-35 Score=330.97 Aligned_cols=262 Identities=25% Similarity=0.405 Sum_probs=210.6
Q ss_pred CCccEEEEEeecccCcccccceec-----cCC------ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVH-----EGT------ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~-----~g~------~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
....||+++||++|||||+++.+. .|+ ..+|..++||+|||||+++...+.+++++|+|||||||.+|.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 456899999999999999988774 122 269999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 213 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~ 213 (742)
.++.+++..+|++++|||+.+|++.||++++.++...++|. |++|||||+...+ +..+.+.+
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~--~~~~~i~~--------------- 201 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE--ELLELVEM--------------- 201 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH--HHHHHHHH---------------
Confidence 99999999999999999999999999999999999999996 6899999986411 11111110
Q ss_pred CCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 004615 214 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 293 (742)
Q Consensus 214 ~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~ 293 (742)
++.+.+...
T Consensus 202 -----------------------------------------------------------------------~i~~~l~~~ 210 (447)
T PLN03127 202 -----------------------------------------------------------------------ELRELLSFY 210 (447)
T ss_pred -----------------------------------------------------------------------HHHHHHHHh
Confidence 111111111
Q ss_pred cccCcceeeeecccc---CCCC-------hHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEE
Q 004615 294 TIAGSFVPVLCGSAF---KNKG-------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 363 (742)
Q Consensus 294 ~~~~~~~Pv~~~Sa~---~~~g-------v~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 363 (742)
......+|++++||+ ++.| +..|+++|.+++|.|.. . .++||++.|..++
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r-------~-------------~~~pfr~~I~~vf 270 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVR-------V-------------LDKPFLMPIEDVF 270 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCc-------c-------------cccceEeeEEEEE
Confidence 111223677777775 4444 78999999999998754 1 3689999999999
Q ss_pred ecCCCceEEEEEEEeeEecCCCEEEeCCC----CceEecceEEEeecCceeecccccCCCEEEE--cCCC--ccccCcee
Q 004615 364 SDPFVGSLTFVRVYAGTLSAGSYVLNANK----GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 435 (742)
Q Consensus 364 ~~~~~G~l~~~RV~sG~L~~gd~v~~~~~----~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~~~tGdTL 435 (742)
..++.|.++.|||.+|++++||+|++.+. +...+|++|...+ .++++|.|||.+++ .|++ ++..|++|
T Consensus 271 ~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl 346 (447)
T PLN03127 271 SIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFK----KILDQGQAGDNVGLLLRGLKREDVQRGQVI 346 (447)
T ss_pred EcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEEC----cEeCEEcCCCEEEEEeCCCCHHHCCCccEE
Confidence 99999999999999999999999987643 3467899986543 57899999999997 5654 48899999
Q ss_pred ecCC
Q 004615 436 CDAD 439 (742)
Q Consensus 436 ~~~~ 439 (742)
|+++
T Consensus 347 ~~~~ 350 (447)
T PLN03127 347 CKPG 350 (447)
T ss_pred ecCC
Confidence 9863
No 41
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-35 Score=300.53 Aligned_cols=261 Identities=28% Similarity=0.397 Sum_probs=214.2
Q ss_pred ccEEEEEeecccCcccccceecc-----C-C-----ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHE-----G-T-----ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 136 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~-----g-~-----~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~e 136 (742)
.-||+.|||++|||+|+.-.+.. | . .-.|.-|+|+.|||||.++.+.++...+++--+|||||.||..+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKN 133 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKN 133 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHH
Confidence 38999999999999986544421 2 1 45688899999999999999999999999999999999999999
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCC-CChHHHHHHHHHHhCCcceEEEeccCCC
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQLPVGAE 214 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~-~~~~~~~~~i~~~l~~~~~~~~~Pi~~~ 214 (742)
|+.+..+.|||||||.|++|..+||++++-+|++-|++.| +||||.|... .+.-+.+
T Consensus 134 MItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLV--------------------- 192 (449)
T KOG0460|consen 134 MITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELV--------------------- 192 (449)
T ss_pred hhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHH---------------------
Confidence 9999999999999999999999999999999999999985 8999999763 2211110
Q ss_pred CcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 004615 215 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 294 (742)
Q Consensus 215 ~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~ 294 (742)
+-|+++.|....
T Consensus 193 --------------------------------------------------------------------EmE~RElLse~g 204 (449)
T KOG0460|consen 193 --------------------------------------------------------------------EMEIRELLSEFG 204 (449)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHcC
Confidence 123444444445
Q ss_pred ccCcceeeeeccccC---C----CC---hHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEe
Q 004615 295 IAGSFVPVLCGSAFK---N----KG---VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 364 (742)
Q Consensus 295 ~~~~~~Pv~~~Sa~~---~----~g---v~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 364 (742)
..+...||++|||+- + .| |..|||++.+|+|.|.. . -+.||.+-|-.++.
T Consensus 205 f~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R-------~-------------~~~pFl~pie~vfs 264 (449)
T KOG0460|consen 205 FDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER-------D-------------LDKPFLLPIEDVFS 264 (449)
T ss_pred CCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc-------c-------------cCCCceeehhheee
Confidence 556778999999883 2 33 67899999999999976 2 38999999999999
Q ss_pred cCCCceEEEEEEEeeEecCCCEEEeCCCCc--eEecceEEEeecCceeecccccCCCEEEE--cCCC--ccccCceeecC
Q 004615 365 DPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDA 438 (742)
Q Consensus 365 ~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~--~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~~~tGdTL~~~ 438 (742)
.+++|+++.||+..|+|++|+++-....++ +..|..|.+++ +.+++|.|||.+++ .|++ +++.|..++.+
T Consensus 265 I~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~p 340 (449)
T KOG0460|consen 265 IPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRGMVLAKP 340 (449)
T ss_pred ecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHH----HHHHhcccccceehhhhcCCHHHHhcccEEecC
Confidence 999999999999999999999998765544 44577775444 67999999999987 6665 58999999987
Q ss_pred CCc
Q 004615 439 DHP 441 (742)
Q Consensus 439 ~~~ 441 (742)
+..
T Consensus 341 Gsv 343 (449)
T KOG0460|consen 341 GSV 343 (449)
T ss_pred Ccc
Confidence 753
No 42
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=2.9e-34 Score=318.51 Aligned_cols=257 Identities=24% Similarity=0.272 Sum_probs=200.0
Q ss_pred EEEEEeecccCccccccee-------c-------------cCC--------ccCCCcHhHHhhcceEecceEEEEecCeE
Q 004615 70 QFSVFAMAAEGRNYKIGEV-------H-------------EGT--------ATMDWMEQEQERGITITSAATTTYWNKHR 121 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v-------~-------------~g~--------~~~D~~~~E~erGITi~s~~~~~~~~~~~ 121 (742)
||+++||+++||||++|++ + .|+ ++||++++||+||+||+++...+.|++++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999977755 1 343 48999999999999999999999999999
Q ss_pred EEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCCCCChHHHHHHHHHHh
Q 004615 122 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNL 200 (742)
Q Consensus 122 inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~~~~~~~~i~~~l 200 (742)
++|||||||.+|..++.++++.+|+||+||||.+|++.||+++|..+...++|. |+++||||+...+ .+.++++.+.+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~~ 160 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKDY 160 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875 6799999987543 12222222111
Q ss_pred CCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCC
Q 004615 201 GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 280 (742)
Q Consensus 201 ~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~ 280 (742)
T Consensus 161 -------------------------------------------------------------------------------- 160 (406)
T TIGR02034 161 -------------------------------------------------------------------------------- 160 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCcccccccc
Q 004615 281 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEATLERA 348 (742)
Q Consensus 281 ~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~ 348 (742)
...++... ...+|++++||++|.|+.. |+++|.. +|.|..
T Consensus 161 ------~~~~~~~~--~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~------------------- 212 (406)
T TIGR02034 161 ------LAFAEQLG--FRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERD------------------- 212 (406)
T ss_pred ------HHHHHHcC--CCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCC-------------------
Confidence 11111100 1135788899999999864 6676654 454432
Q ss_pred cCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcC--C
Q 004615 349 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAG--L 426 (742)
Q Consensus 349 ~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~g--l 426 (742)
..+.||.+.|..++.....+.-..|+|.+|+|++||+|+..+.+...+|++|...+ .++++|.|||.+++.. .
T Consensus 213 -~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~~G~~v~l~l~~~ 287 (406)
T TIGR02034 213 -AQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFD----GDLEQARAGQAVTLTLDDE 287 (406)
T ss_pred -cCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECC----cccCEeCCCCEEEEEECCc
Confidence 12678888777766432212225699999999999999998888889999997443 5689999999999843 3
Q ss_pred CccccCceeecCCC
Q 004615 427 KDTITGETLCDADH 440 (742)
Q Consensus 427 ~~~~tGdTL~~~~~ 440 (742)
+++..|++||+++.
T Consensus 288 ~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 288 IDISRGDLLAAADS 301 (406)
T ss_pred cccCCccEEEcCCC
Confidence 34889999998765
No 43
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=1.1e-33 Score=323.89 Aligned_cols=312 Identities=21% Similarity=0.289 Sum_probs=244.3
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCe-EEEEEcCCCccCcHHHHHHHHHhh
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~-~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
.+.++|+++||+++||||++..+..++ +. .+..+|||++....++.|++. .++|||||||.+|...+.++++.+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~----~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~a 159 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK-VA----QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVT 159 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-cc----cccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccC
Confidence 356899999999999999998876532 21 223479999999999999765 999999999999999999999999
Q ss_pred ceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecc
Q 004615 145 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLV 224 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~ 224 (742)
|++|+|+|+.+|+++||.++|+++...++|+|+++||+|+.+++.+++.+++++ ++..
T Consensus 160 DiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~~--------------------- 217 (587)
T TIGR00487 160 DIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGLV--------------------- 217 (587)
T ss_pred CEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhhh---------------------
Confidence 999999999999999999999999999999999999999987765554444332 0100
Q ss_pred cceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeee
Q 004615 225 KMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLC 304 (742)
Q Consensus 225 ~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~ 304 (742)
.+.| +...|+++
T Consensus 218 -----------------------------------------------~~~~---------------------~~~~~~v~ 229 (587)
T TIGR00487 218 -----------------------------------------------PEDW---------------------GGDTIFVP 229 (587)
T ss_pred -----------------------------------------------HHhc---------------------CCCceEEE
Confidence 0000 11246889
Q ss_pred ccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCC
Q 004615 305 GSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAG 384 (742)
Q Consensus 305 ~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~g 384 (742)
+||++|.|++.|+++|.... ...+ ...+++.|+.++|++++.+++.|.++++||++|+|++|
T Consensus 230 iSAktGeGI~eLl~~I~~~~-~~~~-----------------l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~G 291 (587)
T TIGR00487 230 VSALTGDGIDELLDMILLQS-EVEE-----------------LKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVG 291 (587)
T ss_pred EECCCCCChHHHHHhhhhhh-hhcc-----------------ccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCC
Confidence 99999999999999987421 0000 12235789999999999999999999999999999999
Q ss_pred CEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCcc-ccCceeecCCC-----------------------
Q 004615 385 SYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADH----------------------- 440 (742)
Q Consensus 385 d~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~-~tGdTL~~~~~----------------------- 440 (742)
|.|.+.+. ..+|..++. .....+++|.||++|.|.|++++ .+||+|+-..+
T Consensus 292 d~iv~~~~--~~kVr~l~~---~~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~ 366 (587)
T TIGR00487 292 DIVVVGAA--YGRVRAMID---ENGKSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRS 366 (587)
T ss_pred CEEEECCC--ccEEEEEEC---CCCCCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99998763 235555544 34467899999999999999986 89999973211
Q ss_pred -cccccccCC-----CCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHH
Q 004615 441 -PILLERMDF-----PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHL 504 (742)
Q Consensus 441 -~~~l~~i~~-----~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHL 504 (742)
...++.+.. ..|.+.+.|++...+..+.|.++|.++..+++.+.+- -.|.|.++=
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~---------~~~vG~i~~ 427 (587)
T TIGR00487 367 VKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI---------HSGVGGITE 427 (587)
T ss_pred cccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE---------EeecCCCch
Confidence 111222221 1488999999999999999999999999999998874 366676643
No 44
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=3.5e-34 Score=320.90 Aligned_cols=260 Identities=26% Similarity=0.351 Sum_probs=212.9
Q ss_pred CCccEEEEEeecccCcccccceec-------c-------------C------CccCCCcHhHHhhcceEecceEEEEecC
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVH-------E-------------G------TATMDWMEQEQERGITITSAATTTYWNK 119 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~-------~-------------g------~~~~D~~~~E~erGITi~s~~~~~~~~~ 119 (742)
+...||+++||+++||||++|.+- . | .+++|++++||+||+|++.....+.|++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 346899999999999999777652 1 2 3589999999999999999999999999
Q ss_pred eEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCC--CCcccHHHHHHHHHHcCCC-eEEEEecccCCCCC---hHHHH
Q 004615 120 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN---FFRTR 193 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~--Gv~~qT~~v~~~a~~~~ip-~il~INK~Dr~~~~---~~~~~ 193 (742)
++++|||||||.+|..++.++++.+|++|+|||+.+ |+..||+.++..+...++| +++++||||+...+ ++.+.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999985 67899999987532 12222
Q ss_pred HHHHHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHH
Q 004615 194 DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 273 (742)
Q Consensus 194 ~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle 273 (742)
+++++.+
T Consensus 164 ~~i~~~l------------------------------------------------------------------------- 170 (425)
T PRK12317 164 EEVSKLL------------------------------------------------------------------------- 170 (425)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 2222211
Q ss_pred HHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCc
Q 004615 274 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENP 341 (742)
Q Consensus 274 ~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~------------LLd~I~~~lPsP~~~~~~~~~~~~~~ 341 (742)
.........+|++++||++|.|+.. |+++|. .+|.|.. .
T Consensus 171 -----------------~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~-~~~~~~~-------~---- 221 (425)
T PRK12317 171 -----------------KMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALD-NLKPPEK-------P---- 221 (425)
T ss_pred -----------------HhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHh-cCCCCcc-------c----
Confidence 1111111235789999999999874 888864 4666633 1
Q ss_pred ccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEE
Q 004615 342 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDII 421 (742)
Q Consensus 342 ~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv 421 (742)
.+.||.+.|..++..++.|.++.|||.+|+|+.||.|+..+.+...+|++|... ..+++.|.|||.|
T Consensus 222 ---------~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v 288 (425)
T PRK12317 222 ---------TDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH----HEELPQAEPGDNI 288 (425)
T ss_pred ---------cCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC----CcccCEECCCCeE
Confidence 378999999999999999999999999999999999999998888899998753 3679999999999
Q ss_pred EE--cCCC--ccccCceeecCCC
Q 004615 422 AL--AGLK--DTITGETLCDADH 440 (742)
Q Consensus 422 ~I--~gl~--~~~tGdTL~~~~~ 440 (742)
++ .|++ ++..|++|+++.+
T Consensus 289 ~i~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 289 GFNVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred EEEECCCCHHHccCccEecCCCC
Confidence 87 4553 4789999998754
No 45
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=3.1e-34 Score=319.14 Aligned_cols=259 Identities=18% Similarity=0.247 Sum_probs=206.9
Q ss_pred CCCCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe---------------c----------
Q 004615 64 SPRSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------N---------- 118 (742)
Q Consensus 64 ~~~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~---------------~---------- 118 (742)
..+...||+++||++|||||+++.+.. ..+|.+++|++|||||+....++.| .
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg--~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSG--VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCP 107 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhC--CCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccc
Confidence 345678999999999999999999885 5678999999999999999887632 0
Q ss_pred --------CeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCC-CcccHHHHHHHHHHcCCCe-EEEEecccCCCCC
Q 004615 119 --------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN 188 (742)
Q Consensus 119 --------~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~G-v~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~ 188 (742)
.++|+|||||||.+|..++.+++..+|+|++||||.+| +++||++++..+...+++. |+++||||+...+
T Consensus 108 ~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 108 GCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHH
Confidence 24799999999999999999999999999999999997 8999999999999999975 6899999986421
Q ss_pred -hHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHcc
Q 004615 189 -FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 267 (742)
Q Consensus 189 -~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~ 267 (742)
..+.++++++.+
T Consensus 188 ~~~~~~~ei~~~l------------------------------------------------------------------- 200 (460)
T PTZ00327 188 QAQDQYEEIRNFV------------------------------------------------------------------- 200 (460)
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 222222222211
Q ss_pred CHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccc
Q 004615 268 DDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 347 (742)
Q Consensus 268 dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~ 347 (742)
+.. .....|++++||++|.|++.|++.|.+.+|.|.. .
T Consensus 201 -----------------------~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r-------~---------- 238 (460)
T PTZ00327 201 -----------------------KGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIPKR-------D---------- 238 (460)
T ss_pred -----------------------Hhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCC-------C----------
Confidence 100 0234689999999999999999999999998754 1
Q ss_pred ccCCCCCeEEEEEEEEec--------CCCceEEEEEEEeeEecCCCEEEeCCCC-------------ceEecceEEEeec
Q 004615 348 AASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKG-------------KKERIGRLLEMHA 406 (742)
Q Consensus 348 ~~~~~~p~~~~V~k~~~~--------~~~G~l~~~RV~sG~L~~gd~v~~~~~~-------------~~~kV~~l~~~~g 406 (742)
.+.|+.++|..+|.. .++|.++.|+|.+|++++||+|...+.+ ...+|++|...
T Consensus 239 ---~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~-- 313 (460)
T PTZ00327 239 ---LTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAE-- 313 (460)
T ss_pred ---CCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEEC--
Confidence 367899999877643 3479999999999999999999988754 24578888642
Q ss_pred CceeecccccCCCEEEEc-----CCC--ccccCceeecCCC
Q 004615 407 NSREDVKVALAGDIIALA-----GLK--DTITGETLCDADH 440 (742)
Q Consensus 407 ~~~~~v~~a~aGdIv~I~-----gl~--~~~tGdTL~~~~~ 440 (742)
..++++|.|||.++|. ++. ++..|++|+.++.
T Consensus 314 --~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 314 --NNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred --CeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 3789999999999984 332 3678999998653
No 46
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-34 Score=285.63 Aligned_cols=261 Identities=26% Similarity=0.395 Sum_probs=208.2
Q ss_pred ccEEEEEeecccCcccccceecc------CC-----ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHE------GT-----ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 136 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~------g~-----~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~e 136 (742)
.-||+.|||++|||+|+.-.+.. +. .-.|..|+||+|||||.++.+.++..++.+-.+|||||.||..+
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKN 91 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKN 91 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHH
Confidence 48999999999999985544321 11 34678999999999999999999999999999999999999999
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCC
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAED 215 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~ 215 (742)
|+.+..+.|||||||.|.+|+++||++++-.+++.|+|.| +|+||+|....
T Consensus 92 MItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd---------------------------- 143 (394)
T COG0050 92 MITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD---------------------------- 143 (394)
T ss_pred HhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc----------------------------
Confidence 9999999999999999999999999999999999999985 79999997641
Q ss_pred cceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcc
Q 004615 216 NFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTI 295 (742)
Q Consensus 216 ~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~ 295 (742)
++++|.. +.|+++.|...-.
T Consensus 144 -----------------------------------------------------~ellelV-------emEvreLLs~y~f 163 (394)
T COG0050 144 -----------------------------------------------------EELLELV-------EMEVRELLSEYGF 163 (394)
T ss_pred -----------------------------------------------------HHHHHHH-------HHHHHHHHHHcCC
Confidence 1111111 1233334444444
Q ss_pred cCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCC
Q 004615 296 AGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 367 (742)
Q Consensus 296 ~~~~~Pv~~~Sa~~~~--------gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 367 (742)
.+...||+.+||++-- -|.+||+++.+|+|.|.. + .+.||.+-|-.++...+
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per-------~-------------~dkPflmpvEdvfsIsg 223 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER-------D-------------IDKPFLMPVEDVFSISG 223 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC-------c-------------ccccccccceeeEEEcC
Confidence 5566899999998642 267899999999999976 2 38999999999999999
Q ss_pred CceEEEEEEEeeEecCCCEEEeCCCC--ceEecceEEEeecCceeecccccCCCEEEE--cCC--CccccCceeecCCC
Q 004615 368 VGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTITGETLCDADH 440 (742)
Q Consensus 368 ~G~l~~~RV~sG~L~~gd~v~~~~~~--~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl--~~~~tGdTL~~~~~ 440 (742)
+|.+++|||-.|+|+.|+.+-...-. ++..+..+-++ ++..++..|||.+++ .|. +++..|..|+.++.
T Consensus 224 rgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemf----rk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgs 298 (394)
T COG0050 224 RGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGS 298 (394)
T ss_pred ceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHH----HHHHhccccCCCcceEEEeccccceecceEeecCCc
Confidence 99999999999999999999875433 22334444222 256789999999987 444 35888999987654
No 47
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=2.5e-33 Score=315.54 Aligned_cols=263 Identities=24% Similarity=0.257 Sum_probs=202.7
Q ss_pred CCccEEEEEeecccCccccccee-------c-------------cCC--------ccCCCcHhHHhhcceEecceEEEEe
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEV-------H-------------EGT--------ATMDWMEQEQERGITITSAATTTYW 117 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v-------~-------------~g~--------~~~D~~~~E~erGITi~s~~~~~~~ 117 (742)
....||+|+||+++||||++|++ + .|+ ++||++++||+|||||+++...+.|
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34589999999999999977754 1 243 3899999999999999999999999
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCC-eEEEEecccCCCCChHHHHHHH
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMI 196 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip-~il~INK~Dr~~~~~~~~~~~i 196 (742)
++++++|||||||.+|..++.++++.+|+||+||||.+|++.||++++..+...+++ .|+++||||+...+ ...++++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-~~~~~~i 183 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EEVFERI 183 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch-hHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976 57899999987543 1122222
Q ss_pred HHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHh
Q 004615 197 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 276 (742)
Q Consensus 197 ~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl 276 (742)
.+.
T Consensus 184 ~~~----------------------------------------------------------------------------- 186 (474)
T PRK05124 184 RED----------------------------------------------------------------------------- 186 (474)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 211
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 004615 277 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEAT 344 (742)
Q Consensus 277 ~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~ 344 (742)
+...+++... ....|++++||++|.|+.. |++. .+.+|.|..
T Consensus 187 ---------l~~~~~~~~~-~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~-L~~i~~~~~--------------- 240 (474)
T PRK05124 187 ---------YLTFAEQLPG-NLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEV-LETVDIQRV--------------- 240 (474)
T ss_pred ---------HHHHHHhcCC-CCCceEEEEEeecCCCcccccccccccchhhHHHH-HhhcCCCCC---------------
Confidence 1111110000 1236788899999999854 5654 455665533
Q ss_pred cccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEc
Q 004615 345 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA 424 (742)
Q Consensus 345 ~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~ 424 (742)
+.+.|+++.|..++...+...-..|||.+|+|+.||+|+..+.+...+|++|...+ .+++.|.|||.|++.
T Consensus 241 -----~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~----~~v~~A~aG~~V~l~ 311 (474)
T PRK05124 241 -----VDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFD----GDLEEAFAGEAITLV 311 (474)
T ss_pred -----CCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcC----ccccCcCCCCEEEEE
Confidence 13689999888776533211124699999999999999999999889999997543 468999999999984
Q ss_pred C--CCccccCceeecCCCc
Q 004615 425 G--LKDTITGETLCDADHP 441 (742)
Q Consensus 425 g--l~~~~tGdTL~~~~~~ 441 (742)
. ..++..||+||+++.+
T Consensus 312 L~~~~~i~rG~VL~~~~~~ 330 (474)
T PRK05124 312 LEDEIDISRGDLLVAADEA 330 (474)
T ss_pred eCCccccCCccEEECCCCC
Confidence 3 3348899999987544
No 48
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=8.6e-33 Score=309.64 Aligned_cols=260 Identities=27% Similarity=0.357 Sum_probs=210.9
Q ss_pred CCccEEEEEeecccCcccccceecc--------------------C------CccCCCcHhHHhhcceEecceEEEEecC
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE--------------------G------TATMDWMEQEQERGITITSAATTTYWNK 119 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~--------------------g------~~~~D~~~~E~erGITi~s~~~~~~~~~ 119 (742)
..+.||+++||+++||||++|.+-. | .+++|..++|++||+|++.+...+.|++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 4568999999999999998776521 2 1579999999999999999999999999
Q ss_pred eEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCC---CcccHHHHHHHHHHcCCC-eEEEEecccCCCCCh---HHH
Q 004615 120 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG---VEPQSETVWRQADKYGVP-RICFVNKMDRLGANF---FRT 192 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~G---v~~qT~~v~~~a~~~~ip-~il~INK~Dr~~~~~---~~~ 192 (742)
+.++|+|||||.+|...+.++++.+|++|+|||+.+| ...||..++..+...+++ +|+++||+|+...+. +.+
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~ 164 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAI 164 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHH
Confidence 9999999999999999999999999999999999999 899999998888888875 568999999875331 111
Q ss_pred HHHHHHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHH
Q 004615 193 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAM 272 (742)
Q Consensus 193 ~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~ll 272 (742)
.+++++
T Consensus 165 ~~ei~~-------------------------------------------------------------------------- 170 (426)
T TIGR00483 165 KKEVSN-------------------------------------------------------------------------- 170 (426)
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 222211
Q ss_pred HHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCCCC
Q 004615 273 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDPEN 340 (742)
Q Consensus 273 e~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~------------~LLd~I~~~lPsP~~~~~~~~~~~~~ 340 (742)
.++........+|++.+||++|.|+. .|+++|.+ +|.|..
T Consensus 171 ----------------~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~----------- 222 (426)
T TIGR00483 171 ----------------LIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEK----------- 222 (426)
T ss_pred ----------------HHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCC-----------
Confidence 11111111223678899999999986 48999855 555532
Q ss_pred cccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCE
Q 004615 341 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDI 420 (742)
Q Consensus 341 ~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdI 420 (742)
+.+.||.+.|..++..++.|.++.|||.+|+|+.||.|.+.+.+...+|++|...+ .++++|.|||.
T Consensus 223 ---------~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~ 289 (426)
T TIGR00483 223 ---------PTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHH----EQIEQAEPGDN 289 (426)
T ss_pred ---------ccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECC----cccCEEcCCCE
Confidence 13689999999999999999999999999999999999999988888999997443 67899999999
Q ss_pred EEE--cCC--CccccCceeecCCC
Q 004615 421 IAL--AGL--KDTITGETLCDADH 440 (742)
Q Consensus 421 v~I--~gl--~~~~tGdTL~~~~~ 440 (742)
+++ .++ ++++.|++|++++.
T Consensus 290 v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 290 IGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred EEEEECCCChhhcccceEEecCCC
Confidence 988 454 34889999998754
No 49
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=7.5e-32 Score=312.28 Aligned_cols=312 Identities=20% Similarity=0.287 Sum_probs=239.6
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec----CeEEEEEcCCCccCcHHHHHHHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----KHRINIIDTPGHVDFTLEVERAL 141 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~----~~~inlIDTPGh~DF~~ev~~al 141 (742)
.+.|+|+|+||+++||||++..+..++. ..+..+|||+......+.|. ++.|+|||||||.+|...+.+++
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~-----~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~ 316 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI-----AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGA 316 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC-----ccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHH
Confidence 4679999999999999999887755332 12345899999888887774 58999999999999999999999
Q ss_pred HhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCcceeee
Q 004615 142 RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVV 221 (742)
Q Consensus 142 ~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~i 221 (742)
+.+|++|+|||+.+|+++||.++|+++...++|+|+++||+|+..++++++.+++... +.
T Consensus 317 ~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l------------------- 376 (742)
T CHL00189 317 NVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL------------------- 376 (742)
T ss_pred HHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc-------------------
Confidence 9999999999999999999999999999999999999999999876655444443321 00
Q ss_pred ecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCccee
Q 004615 222 DLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVP 301 (742)
Q Consensus 222 dl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~P 301 (742)
+.+ + .+..+|
T Consensus 377 -------------------------------------------------l~e-----------~----------~g~~vp 386 (742)
T CHL00189 377 -------------------------------------------------IPE-----------K----------WGGDTP 386 (742)
T ss_pred -------------------------------------------------chH-----------h----------hCCCce
Confidence 000 0 023468
Q ss_pred eeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEe
Q 004615 302 VLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTL 381 (742)
Q Consensus 302 v~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L 381 (742)
++++||++|.|++.|+++|..+...+. ..++++.|+.++|+++..+++.|.++++||++|+|
T Consensus 387 vv~VSAktG~GIdeLle~I~~l~e~~~------------------lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtL 448 (742)
T CHL00189 387 MIPISASQGTNIDKLLETILLLAEIED------------------LKADPTQLAQGIILEAHLDKTKGPVATILVQNGTL 448 (742)
T ss_pred EEEEECCCCCCHHHHHHhhhhhhhhhc------------------ccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEE
Confidence 999999999999999999988743211 12245789999999999999999999999999999
Q ss_pred cCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCC-ccccCceeecCCCcc------------------
Q 004615 382 SAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLK-DTITGETLCDADHPI------------------ 442 (742)
Q Consensus 382 ~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~-~~~tGdTL~~~~~~~------------------ 442 (742)
+.||.|++.+ +.++|+.|.+....++++|.|||+|.|.||+ ...+||+|.-..+.-
T Consensus 449 r~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~ 523 (742)
T CHL00189 449 HIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKEAKLKIIKNKENNKKDTT 523 (742)
T ss_pred ecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999876 4567778888888899999999999999995 477999996322110
Q ss_pred ---ccccc----C-CCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHH
Q 004615 443 ---LLERM----D-FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHL 504 (742)
Q Consensus 443 ---~l~~i----~-~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHL 504 (742)
.+..+ . -..+.+.+-|.....+..+.|..+|.++..+. +.+. ++-.|.|.+.-
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~--v~i~-------i~~~~vG~it~ 584 (742)
T CHL00189 524 KRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKK--VQLN-------ILYASLGEVTE 584 (742)
T ss_pred cccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCc--EEEE-------EEEeecCCCCH
Confidence 00000 0 01356777788888888888888887774332 2222 34567777643
No 50
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=9.5e-32 Score=310.27 Aligned_cols=251 Identities=18% Similarity=0.216 Sum_probs=207.5
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe-cCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~-~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
.|+++||++||||+++..+.. +.+|..++|++|||||+.....+.+ ++..++|||||||.+|..++.+++..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg--~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITG--VNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhC--CCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 689999999999999888764 4479999999999999998888776 4678999999999999999999999999999
Q ss_pred EEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCCCCC-hHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecccc
Q 004615 149 CLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKM 226 (742)
Q Consensus 149 lVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~-~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~ 226 (742)
+|||+.+|+.+||++++..+...++|. |+++||+|+...+ ++.+.+++++.+
T Consensus 80 LVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l-------------------------- 133 (614)
T PRK10512 80 LVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL-------------------------- 133 (614)
T ss_pred EEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH--------------------------
Confidence 999999999999999999999999996 6999999986421 222222222211
Q ss_pred eEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeecc
Q 004615 227 KAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGS 306 (742)
Q Consensus 227 ~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~S 306 (742)
... .....|++++|
T Consensus 134 ----------------------------------------------------------------~~~--~~~~~~ii~VS 147 (614)
T PRK10512 134 ----------------------------------------------------------------REY--GFAEAKLFVTA 147 (614)
T ss_pred ----------------------------------------------------------------Hhc--CCCCCcEEEEe
Confidence 100 01235799999
Q ss_pred ccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCE
Q 004615 307 AFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSY 386 (742)
Q Consensus 307 a~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~ 386 (742)
|++|.|++.|++.|.++. .|.. . .++||++.|..++..++.|.++.|+|.+|+|+.||+
T Consensus 148 A~tG~gI~~L~~~L~~~~-~~~~-------~-------------~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~ 206 (614)
T PRK10512 148 ATEGRGIDALREHLLQLP-EREH-------A-------------AQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDT 206 (614)
T ss_pred CCCCCCCHHHHHHHHHhh-cccc-------C-------------cCCCceEEEEEEeccCCCeEEEEEEEecceEecCCE
Confidence 999999999999998764 3432 1 368999999999999999999999999999999999
Q ss_pred EEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cC-CC--ccccCceeecCC
Q 004615 387 VLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG-LK--DTITGETLCDAD 439 (742)
Q Consensus 387 v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~g-l~--~~~tGdTL~~~~ 439 (742)
|.+.+.+...+|++|... ..++++|.|||.+++ .| ++ ++..||+||+++
T Consensus 207 v~i~p~~~~~~VrsIq~~----~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 207 LWLTGVNKPMRVRGLHAQ----NQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred EEEcCCCCcEEEEEEecC----CcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 999888888889888643 267999999999988 44 43 489999999763
No 51
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=2.4e-31 Score=295.14 Aligned_cols=258 Identities=19% Similarity=0.280 Sum_probs=204.9
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--------------------------Ce
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------------------KH 120 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--------------------------~~ 120 (742)
...||+++||+++||||+++.+.. .++|..++|++||+|++.+...+.|. .+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~--~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTG--VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhC--eecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 348999999999999999988843 57999999999999999987665552 26
Q ss_pred EEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCC-cccHHHHHHHHHHcCCC-eEEEEecccCCCCCh-HHHHHHHH
Q 004615 121 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-RICFVNKMDRLGANF-FRTRDMIV 197 (742)
Q Consensus 121 ~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv-~~qT~~v~~~a~~~~ip-~il~INK~Dr~~~~~-~~~~~~i~ 197 (742)
+++|+|||||.+|..++.+++..+|++++|||+.+|+ ..||+.++..+...+++ .++++||+|+...+. ....++++
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~ 165 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIK 165 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHH
Confidence 8999999999999999999999999999999999998 89999999999888885 688999999865321 11111111
Q ss_pred HHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhc
Q 004615 198 TNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLE 277 (742)
Q Consensus 198 ~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~ 277 (742)
+
T Consensus 166 ~------------------------------------------------------------------------------- 166 (411)
T PRK04000 166 E------------------------------------------------------------------------------- 166 (411)
T ss_pred H-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEE
Q 004615 278 GNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAG 357 (742)
Q Consensus 278 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 357 (742)
.+... .....|++++||++|.|++.|++.|.+.+|.|.. + .+.|+++
T Consensus 167 -----------~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~-------~-------------~~~~~r~ 213 (411)
T PRK04000 167 -----------FVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTPER-------D-------------LDKPPRM 213 (411)
T ss_pred -----------Hhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCC-------C-------------CCCCceE
Confidence 01000 0123689999999999999999999999987744 1 3689999
Q ss_pred EEEEEEec--------CCCceEEEEEEEeeEecCCCEEEeCCCCc------------eEecceEEEeecCceeecccccC
Q 004615 358 LAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMHANSREDVKVALA 417 (742)
Q Consensus 358 ~V~k~~~~--------~~~G~l~~~RV~sG~L~~gd~v~~~~~~~------------~~kV~~l~~~~g~~~~~v~~a~a 417 (742)
.|..++.. +++|.+..|||.+|+|++||.|...+.+. ..+|++|... ..++++|.|
T Consensus 214 ~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~----~~~~~~a~~ 289 (411)
T PRK04000 214 YVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG----GEKVEEARP 289 (411)
T ss_pred EEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEEC----CEECCEEcC
Confidence 99988743 34678999999999999999999987652 3578888643 277999999
Q ss_pred CCEEEEc-----CC--CccccCceeecCCCcc
Q 004615 418 GDIIALA-----GL--KDTITGETLCDADHPI 442 (742)
Q Consensus 418 GdIv~I~-----gl--~~~~tGdTL~~~~~~~ 442 (742)
||.+++. ++ +++..|+.||+++.++
T Consensus 290 G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~ 321 (411)
T PRK04000 290 GGLVGVGTKLDPSLTKADALAGSVAGKPGTLP 321 (411)
T ss_pred CCEEEEEeccCCCCCHHHccCccEEEcCCCCC
Confidence 9999984 33 2378899999876543
No 52
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.98 E-value=6.4e-31 Score=292.04 Aligned_cols=257 Identities=18% Similarity=0.282 Sum_probs=203.8
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--------------------------C
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------------------K 119 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--------------------------~ 119 (742)
+...||+++||+++||||+++.+.. ..+|..++|++||+|++.+...+.|. +
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~--~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTG--VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELL 79 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhC--eecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccc
Confidence 3457999999999999999988853 56899999999999999997766532 4
Q ss_pred eEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCC-cccHHHHHHHHHHcCCC-eEEEEecccCCCCCh-HHHHHHH
Q 004615 120 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-RICFVNKMDRLGANF-FRTRDMI 196 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv-~~qT~~v~~~a~~~~ip-~il~INK~Dr~~~~~-~~~~~~i 196 (742)
+.++|+|||||.+|..++.++++.+|++|+|||+.+|+ +.||++++..+...+++ .++++||+|+...+. ....+++
T Consensus 80 ~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 80 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 99999999999988876 578999999865321 1111111
Q ss_pred HHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHh
Q 004615 197 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 276 (742)
Q Consensus 197 ~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl 276 (742)
.+
T Consensus 160 ~~------------------------------------------------------------------------------ 161 (406)
T TIGR03680 160 KE------------------------------------------------------------------------------ 161 (406)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 11
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeE
Q 004615 277 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFA 356 (742)
Q Consensus 277 ~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 356 (742)
.+... ....+|+++.||++|.|++.|+++|.+++|.|.. . .+.|+.
T Consensus 162 ------------~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~-------~-------------~~~~~~ 207 (406)
T TIGR03680 162 ------------FVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIPTPER-------D-------------LDKPPL 207 (406)
T ss_pred ------------hhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCC-------C-------------CCCCcE
Confidence 01000 0123589999999999999999999999987743 1 368999
Q ss_pred EEEEEEEec--------CCCceEEEEEEEeeEecCCCEEEeCCCCc------------eEecceEEEeecCceeeccccc
Q 004615 357 GLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMHANSREDVKVAL 416 (742)
Q Consensus 357 ~~V~k~~~~--------~~~G~l~~~RV~sG~L~~gd~v~~~~~~~------------~~kV~~l~~~~g~~~~~v~~a~ 416 (742)
++|..++.. +++|.+..|||.+|+|++||.|...+.+. ..+|++|... ..++++|.
T Consensus 208 ~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~----~~~~~~a~ 283 (406)
T TIGR03680 208 MYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG----GYKVEEAR 283 (406)
T ss_pred EEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEEC----CEECCEEc
Confidence 999988743 34678999999999999999999976541 3478887643 37899999
Q ss_pred CCCEEEEc-----CCC--ccccCceeecCCC
Q 004615 417 AGDIIALA-----GLK--DTITGETLCDADH 440 (742)
Q Consensus 417 aGdIv~I~-----gl~--~~~tGdTL~~~~~ 440 (742)
|||.++|. +++ ++..|+.||+++.
T Consensus 284 ~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 284 PGGLVGVGTKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred CCCEEEEeeccCCCCCHHHcccccEEEcCCC
Confidence 99999983 332 3678999998764
No 53
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=305.30 Aligned_cols=260 Identities=26% Similarity=0.251 Sum_probs=199.6
Q ss_pred ccEEEEEeecccCcccccceec--------------------cCC--------ccCCCcHhHHhhcceEecceEEEEecC
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVH--------------------EGT--------ATMDWMEQEQERGITITSAATTTYWNK 119 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~--------------------~g~--------~~~D~~~~E~erGITi~s~~~~~~~~~ 119 (742)
..||+|+||+++||||++|++- .|+ +++|..++|++||+||+.+...+.|++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 3579999999999999776441 243 589999999999999999999999999
Q ss_pred eEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCCCCChHHHHHHHHH
Q 004615 120 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVT 198 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~~~~~~~~i~~ 198 (742)
++++|||||||.+|...+..++..+|++|+|||+.+|++.||++++..+...++|. |+++||||+...+.+ .++++..
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~-~~~~i~~ 182 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQE-VFDEIVA 182 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhH-HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999764 679999998653211 1111111
Q ss_pred HhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcC
Q 004615 199 NLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEG 278 (742)
Q Consensus 199 ~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~ 278 (742)
T Consensus 183 -------------------------------------------------------------------------------- 182 (632)
T PRK05506 183 -------------------------------------------------------------------------------- 182 (632)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCCCCcccccc
Q 004615 279 NEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDPENPEATLE 346 (742)
Q Consensus 279 ~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~------------~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 346 (742)
++.+.+++.. ...+|++++||++|.|+. .|++.|.. +|.|.. .
T Consensus 183 ------~i~~~~~~~~--~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~-~~~~~~-------~--------- 237 (632)
T PRK05506 183 ------DYRAFAAKLG--LHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET-VEIASD-------R--------- 237 (632)
T ss_pred ------HHHHHHHHcC--CCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc-CCCCCC-------c---------
Confidence 0111111100 122568889999999986 47776654 444422 1
Q ss_pred cccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcC-
Q 004615 347 RAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAG- 425 (742)
Q Consensus 347 ~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~g- 425 (742)
.++|+.+.|..++...+.+.-..|+|.+|+|++||+|.+.+.+...+|++|...+ .++++|.|||.|++.-
T Consensus 238 ----~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~v~i~l~ 309 (632)
T PRK05506 238 ----NLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPD----GDLDEAFAGQAVTLTLA 309 (632)
T ss_pred ----CCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECC----ceeCEEcCCCeEEEEec
Confidence 2689998887776533211225699999999999999999988889999997443 5689999999999843
Q ss_pred -CCccccCceeecCCCc
Q 004615 426 -LKDTITGETLCDADHP 441 (742)
Q Consensus 426 -l~~~~tGdTL~~~~~~ 441 (742)
-.++..|++||+++++
T Consensus 310 ~~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 310 DEIDISRGDMLARADNR 326 (632)
T ss_pred CccccCCccEEecCCCC
Confidence 2347899999997654
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=1.7e-31 Score=266.41 Aligned_cols=132 Identities=32% Similarity=0.465 Sum_probs=118.8
Q ss_pred CccEEEEEeecccCcccccceeccC-------------CccCCCcHhHHhhcceEecceEEEE--ecCeEEEEEcCCCcc
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEG-------------TATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGHV 131 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g-------------~~~~D~~~~E~erGITi~s~~~~~~--~~~~~inlIDTPGh~ 131 (742)
++|||+++||++|||||+++.+-.. ++.+|..++|++||+|++++...+. +++++|+|||||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 6899999999999999988776321 2468999999999999999999999 999999999999999
Q ss_pred CcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHH
Q 004615 132 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVT 198 (742)
Q Consensus 132 DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~ 198 (742)
||..++.++++.+|+||+|||+.+|++.||+++|+++..+++|+|+|+||||+...++.+.++++++
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKE 148 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999996556666655553
No 55
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=1.9e-29 Score=290.61 Aligned_cols=253 Identities=19% Similarity=0.245 Sum_probs=207.1
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
||+++||+++|||+++..+.. .-+|..++|++||||++.....+.++++.++|||||||.+|...+..++..+|++++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg--~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTG--IAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhC--ccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 799999999999999888764 237888999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccHHHHHHHHHHcCCC-eEEEEecccCCCCC-hHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecccce
Q 004615 150 LFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 227 (742)
Q Consensus 150 VVDa~~Gv~~qT~~v~~~a~~~~ip-~il~INK~Dr~~~~-~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~ 227 (742)
|||+.+|+++||.+++..+...++| .|+++||||+...+ ++.+.+++++
T Consensus 80 VVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~----------------------------- 130 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQ----------------------------- 130 (581)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHH-----------------------------
Confidence 9999999999999999999999999 89999999986422 1111111111
Q ss_pred EEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccc
Q 004615 228 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSA 307 (742)
Q Consensus 228 ~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa 307 (742)
.+..... ....|++++||
T Consensus 131 -------------------------------------------------------------~l~~~~~-~~~~~ii~vSA 148 (581)
T TIGR00475 131 -------------------------------------------------------------ILNSYIF-LKNAKIFKTSA 148 (581)
T ss_pred -------------------------------------------------------------HHHHhCC-CCCCcEEEEeC
Confidence 1111000 01257999999
Q ss_pred cCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEE
Q 004615 308 FKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYV 387 (742)
Q Consensus 308 ~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v 387 (742)
++|.|++.+.+.|.+.++..... ..++|+.+.|..++..++.|.++.|+|.+|+++.||+|
T Consensus 149 ~tG~GI~eL~~~L~~l~~~~~~~-------------------~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l 209 (581)
T TIGR00475 149 KTGQGIGELKKELKNLLESLDIK-------------------RIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNL 209 (581)
T ss_pred CCCCCchhHHHHHHHHHHhCCCc-------------------CcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEE
Confidence 99999999999988776543210 13689999999999999999999999999999999999
Q ss_pred EeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCCC--ccccCceeecC
Q 004615 388 LNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDA 438 (742)
Q Consensus 388 ~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~~~tGdTL~~~ 438 (742)
...+.+...+|++|.. ++ .++++|.||+.++| .|++ ++..|..++++
T Consensus 210 ~i~P~~~~~~Vr~iq~-~~---~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~ 260 (581)
T TIGR00475 210 RLLPINHEVRVKAIQA-QN---QDVEIAYAGQRIALNLMDVEPESLKRGLLILTP 260 (581)
T ss_pred EECCCCceEEEeEEEE-CC---ccCCEEECCCEEEEEeCCCCHHHcCCceEEcCC
Confidence 9999998899999974 32 67999999999998 3443 26788666543
No 56
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3e-29 Score=266.44 Aligned_cols=250 Identities=21% Similarity=0.297 Sum_probs=210.2
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+..||++||||+++-.... ..+|..++|++|||||+....++..+++.+.|||.|||.||...+..++...|.|+|
T Consensus 2 ii~t~GhidHgkT~L~~altg--~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTG--GVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcc--cccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 689999999999987765554 678999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecccceE
Q 004615 150 LFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKA 228 (742)
Q Consensus 150 VVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~ 228 (742)
|||+.+|+++||.+++..++..|++. |+++||+|+.... ++-+.+++.++
T Consensus 80 vV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~--r~e~~i~~Il~--------------------------- 130 (447)
T COG3276 80 VVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA--RIEQKIKQILA--------------------------- 130 (447)
T ss_pred EEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHH--HHHHHHHHHHh---------------------------
Confidence 99999999999999999999999999 8999999987521 21111111110
Q ss_pred EEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeecccc
Q 004615 229 IIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAF 308 (742)
Q Consensus 229 ~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~ 308 (742)
.+. ....|++..|+.
T Consensus 131 ------------------------------------------------------------~l~-----l~~~~i~~~s~~ 145 (447)
T COG3276 131 ------------------------------------------------------------DLS-----LANAKIFKTSAK 145 (447)
T ss_pred ------------------------------------------------------------hcc-----cccccccccccc
Confidence 000 122468899999
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEE
Q 004615 309 KNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVL 388 (742)
Q Consensus 309 ~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~ 388 (742)
+|.||+.|-+.|.+.+- +.+ .+.+.||+.+|...|..++.|+++.|.++||+++.||+++
T Consensus 146 ~g~GI~~Lk~~l~~L~~-~~e-------------------~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~ 205 (447)
T COG3276 146 TGRGIEELKNELIDLLE-EIE-------------------RDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLY 205 (447)
T ss_pred cCCCHHHHHHHHHHhhh-hhh-------------------hccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEE
Confidence 99999999999988663 111 1248999999999999999999999999999999999999
Q ss_pred eCCCCceEecceEEEeecCceeecccccCCCEEEE--cCC--CccccCceeecCC
Q 004615 389 NANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTITGETLCDAD 439 (742)
Q Consensus 389 ~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl--~~~~tGdTL~~~~ 439 (742)
..+.++..+|++|.... +++++|.||+.|++ .|. +.+..|+.|.++.
T Consensus 206 l~p~~k~v~VRsIq~~d----~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 206 LSPINKEVRVRSIQAHD----VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred EecCCCeEEEEeeeecC----cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 99999999999986432 77999999999998 343 2367899998754
No 57
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=1.2e-29 Score=258.00 Aligned_cols=119 Identities=44% Similarity=0.599 Sum_probs=110.3
Q ss_pred cEEEEEeecccCcccccceec-----------cCCccCCCcHhHHhhcceEecceEEEEec----------CeEEEEEcC
Q 004615 69 RQFSVFAMAAEGRNYKIGEVH-----------EGTATMDWMEQEQERGITITSAATTTYWN----------KHRINIIDT 127 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~-----------~g~~~~D~~~~E~erGITi~s~~~~~~~~----------~~~inlIDT 127 (742)
|||+|+||++|||||+++.+- .+.++||++++||+|||||+++.+++.|. ++++|||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 799999999999999766541 12378999999999999999999999997 789999999
Q ss_pred CCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 128 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 128 PGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
|||.||..++.++++.+|+||+|+|+.+|++.||+.+|+++.+.++|+|+++||||+...
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~ 140 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLIL 140 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchh
Confidence 999999999999999999999999999999999999999999999999999999999743
No 58
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.1e-28 Score=263.10 Aligned_cols=252 Identities=25% Similarity=0.339 Sum_probs=206.3
Q ss_pred CccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEec---CeEEEEEcCCCccCcHHHHHHHHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVDFTLEVERALR 142 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~---~~~inlIDTPGh~DF~~ev~~al~ 142 (742)
+.+.|+|+||++||||++++.+...+ .-.+ .-|||.+..+..+.++ ...|.|||||||.-|+....|+..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E------aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~ 77 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE------AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGAS 77 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccccc------CCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCc
Confidence 45799999999999999998887643 1112 2689999999999994 579999999999999999999999
Q ss_pred hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCcceeeee
Q 004615 143 VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVD 222 (742)
Q Consensus 143 ~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~id 222 (742)
++|.||||||+.+|+++||.+-++.|+..++|+|+++||||++.++++++..++.+. |..+
T Consensus 78 vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~~------------------ 138 (509)
T COG0532 78 VTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLVP------------------ 138 (509)
T ss_pred cccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCCH------------------
Confidence 999999999999999999999999999999999999999999999988888877763 2110
Q ss_pred cccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceee
Q 004615 223 LVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPV 302 (742)
Q Consensus 223 l~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv 302 (742)
|.| +..+.+
T Consensus 139 --------------------------------------------------E~~---------------------gg~v~~ 147 (509)
T COG0532 139 --------------------------------------------------EEW---------------------GGDVIF 147 (509)
T ss_pred --------------------------------------------------hhc---------------------CCceEE
Confidence 111 122568
Q ss_pred eeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEec
Q 004615 303 LCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLS 382 (742)
Q Consensus 303 ~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~ 382 (742)
+++||++|.|++.||++|.-..- ....+++++.+..+.|.....++++|.++..=|+.|||+
T Consensus 148 VpvSA~tg~Gi~eLL~~ill~ae------------------v~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~ 209 (509)
T COG0532 148 VPVSAKTGEGIDELLELILLLAE------------------VLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLK 209 (509)
T ss_pred EEeeccCCCCHHHHHHHHHHHHH------------------HHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEe
Confidence 88999999999999999865321 112455678999999999999999999999999999999
Q ss_pred CCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCcc-ccCceeec
Q 004615 383 AGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCD 437 (742)
Q Consensus 383 ~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~-~tGdTL~~ 437 (742)
.||.+...... +++..|......+++.+.++--+-+.|++++ ..||....
T Consensus 210 ~GD~iv~g~~~-----g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v 260 (509)
T COG0532 210 KGDIIVAGGEY-----GRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIV 260 (509)
T ss_pred cCCEEEEccCC-----CceEEeehhcCCCccccCCCCCeEEeccccccccCceEEe
Confidence 99999876533 2344555556678888888888888888874 45766643
No 59
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.7e-28 Score=263.66 Aligned_cols=260 Identities=21% Similarity=0.281 Sum_probs=205.4
Q ss_pred CCCCccEEEEEeecccCcccccceec--cC------------------------CccCCCcHhHHhhcceEecceEEEEe
Q 004615 64 SPRSRRQFSVFAMAAEGRNYKIGEVH--EG------------------------TATMDWMEQEQERGITITSAATTTYW 117 (742)
Q Consensus 64 ~~~~~~ni~iiGh~~~Gk~~~~g~v~--~g------------------------~~~~D~~~~E~erGITi~s~~~~~~~ 117 (742)
.++...|.+++||+++||+|++|++- -| .|++|...+|||||+||+...+.|+-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 34567899999999999999888752 11 39999999999999999999999999
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCC-------CcccHHHHHHHHHHcCCCe-EEEEecccCCCCC-
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN- 188 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~G-------v~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~- 188 (742)
+.+.++|||+|||-||..+|+.+...+|.|||||||.-| ...||+++...++..|+.. |++|||||..+++
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence 999999999999999999999999999999999999876 5789999999999999987 5899999999887
Q ss_pred --hHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHc
Q 004615 189 --FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 266 (742)
Q Consensus 189 --~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e 266 (742)
|+++...+...|...+ .|.+.
T Consensus 333 ~RF~eIk~~l~~fL~~~~-------------------------gf~es-------------------------------- 355 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESC-------------------------GFKES-------------------------------- 355 (603)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------------CcccC--------------------------------
Confidence 3334444433331100 00000
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCCh---------------HHHHHHHHHhCCCCCCCC
Q 004615 267 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGV---------------QPLLDAVVDYLPSPLDLP 331 (742)
Q Consensus 267 ~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv---------------~~LLd~I~~~lPsP~~~~ 331 (742)
.-.|+| +|++.|.|+ ..||+.|-. +-.|..
T Consensus 356 -----------------------------~v~FIP---iSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~-- 400 (603)
T KOG0458|consen 356 -----------------------------SVKFIP---ISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPER-- 400 (603)
T ss_pred -----------------------------CcceEe---cccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCC--
Confidence 012333 355555553 247777776 444433
Q ss_pred CCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceee
Q 004615 332 AMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 411 (742)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~ 411 (742)
+ .+.||++-|..++..+..|...+|||.+|.+.+||+||+.+......|+.|-.= -.+
T Consensus 401 -----~-------------~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~----~~~ 458 (603)
T KOG0458|consen 401 -----P-------------IDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN----DEP 458 (603)
T ss_pred -----c-------------ccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC----CCc
Confidence 1 256999999999999999999999999999999999999998888888887532 367
Q ss_pred cccccCCCEEEE--cCCC--ccccCceeec
Q 004615 412 VKVALAGDIIAL--AGLK--DTITGETLCD 437 (742)
Q Consensus 412 v~~a~aGdIv~I--~gl~--~~~tGdTL~~ 437 (742)
...+.|||-|.+ .|+. .+..||++|.
T Consensus 459 ~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 459 KTWAVAGDNVSLKLPGILPNLVQVGDIADS 488 (603)
T ss_pred ceeEeeCCEEEEecCccChhhcccceeeec
Confidence 889999999987 4432 3789999995
No 60
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=9.5e-29 Score=247.15 Aligned_cols=117 Identities=25% Similarity=0.382 Sum_probs=109.5
Q ss_pred cEEEEEeecccCcccccceec-----------cCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVH-----------EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 137 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~-----------~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev 137 (742)
.||+++||+++||||+++.+- .+.+++|+.++|++||+|++++...+.|++++++|||||||.+|..++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 699999999999999877652 234689999999999999999999999999999999999999999999
Q ss_pred HHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCC-eEEEEecccCC
Q 004615 138 ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRL 185 (742)
Q Consensus 138 ~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip-~il~INK~Dr~ 185 (742)
.++++.+|+|++|||+.+|++.||+++|+.+.+.++| .|+|+||||+.
T Consensus 83 ~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 9999999999999999999999999999999999998 56899999986
No 61
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.5e-27 Score=256.33 Aligned_cols=298 Identities=21% Similarity=0.322 Sum_probs=235.0
Q ss_pred CCCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe-cCeEEEEEcCCCccCcHHHHHHHHHh
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTLEVERALRV 143 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~-~~~~inlIDTPGh~DF~~ev~~al~~ 143 (742)
..+.+.|.|+||++|||||++..+...+ --..| .-|||....+.++.. ++..|+|+|||||.-|.....|+.++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~----VAA~E-~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~v 224 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSS----VAAGE-AGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANV 224 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCc----eehhh-cCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCcc
Confidence 4577999999999999998875553311 11112 268999999988877 68999999999999999999999999
Q ss_pred hceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCcceeeeec
Q 004615 144 LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDL 223 (742)
Q Consensus 144 ~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl 223 (742)
+|.+||||.|.+||.+||.+.+..|+..++|+|+.|||+|+++++.+++..++... |.
T Consensus 225 tDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi--------------------- 282 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GI--------------------- 282 (683)
T ss_pred ccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-Cc---------------------
Confidence 99999999999999999999999999999999999999999999998888877541 10
Q ss_pred ccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeee
Q 004615 224 VKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVL 303 (742)
Q Consensus 224 ~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~ 303 (742)
..|.| +.-++++
T Consensus 283 -----------------------------------------------~~E~~---------------------GGdVQvi 294 (683)
T KOG1145|consen 283 -----------------------------------------------VVEDL---------------------GGDVQVI 294 (683)
T ss_pred -----------------------------------------------cHHHc---------------------CCceeEE
Confidence 00111 3336789
Q ss_pred eccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecC
Q 004615 304 CGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSA 383 (742)
Q Consensus 304 ~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~ 383 (742)
++||++|.|++.|.+++.-.. .....+++|++|+-++|.....++++|.++.+-|-.|||++
T Consensus 295 piSAl~g~nl~~L~eaill~A------------------e~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkK 356 (683)
T KOG1145|consen 295 PISALTGENLDLLEEAILLLA------------------EVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKK 356 (683)
T ss_pred EeecccCCChHHHHHHHHHHH------------------HHhhcccCCCCCceEEEEEeeecCCccceeEEEEecccccc
Confidence 999999999999999987542 11234567899999999999999999999999999999999
Q ss_pred CCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCcc-ccCceeecCCCc---------------------
Q 004615 384 GSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------------------- 441 (742)
Q Consensus 384 gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~-~tGdTL~~~~~~--------------------- 441 (742)
|+.|.... .-.||..++=..| +++++|.+|.-+-|.|.+++ ..||-+...+..
T Consensus 357 G~vlV~G~--~w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~ 431 (683)
T KOG1145|consen 357 GSVLVAGK--SWCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLSKRKDESEQEKISR 431 (683)
T ss_pred ccEEEEec--hhhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998653 2346766665554 78999999999999999994 678877421100
Q ss_pred ------------------ccc--------cccC--CCCceEEEEEEeCCCcCHHHHHHHHHHHHhcC
Q 004615 442 ------------------ILL--------ERMD--FPDPVIKVAIEPKTKADIDKMANGLIKLAQED 480 (742)
Q Consensus 442 ------------------~~l--------~~i~--~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eD 480 (742)
-.. ..+. ...|.+++-|.-.-.+..+.+.++|+-|..+.
T Consensus 432 ~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~ 498 (683)
T KOG1145|consen 432 DLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQ 498 (683)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccchHHHHHHHHhhcCCCc
Confidence 000 0122 22588999999888889999999998777443
No 62
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.4e-27 Score=243.45 Aligned_cols=283 Identities=24% Similarity=0.268 Sum_probs=208.6
Q ss_pred CCccEEEEEeecccCcccccceecc--------------------C--------CccCCCcHhHHhhcceEecceEEEEe
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE--------------------G--------TATMDWMEQEQERGITITSAATTTYW 117 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~--------------------g--------~~~~D~~~~E~erGITi~s~~~~~~~ 117 (742)
+..-++..+|+++.||+|++|++-. | .-++|-++.|||.||||+.++..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3457899999999999999998722 1 14578899999999999999999999
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCCCChHHHHHHH
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 196 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~~~~~~~~i 196 (742)
+.++|.+.|||||..|+.+|..+.+-||.||++|||..|+..||+++.-.+...|++.+ +.|||||+.+.+ ++..++|
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~-e~~F~~I 162 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS-EEVFEAI 162 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccC-HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 899999998765 1222222
Q ss_pred HHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHh
Q 004615 197 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 276 (742)
Q Consensus 197 ~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl 276 (742)
.+-+.
T Consensus 163 ~~dy~--------------------------------------------------------------------------- 167 (431)
T COG2895 163 VADYL--------------------------------------------------------------------------- 167 (431)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 22110
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 004615 277 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDPENPEAT 344 (742)
Q Consensus 277 ~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~------------~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~ 344 (742)
....++. ....-.++.||+.|.||- .||+.+-..-..
T Consensus 168 -----------~fa~~L~--~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~------------------ 216 (431)
T COG2895 168 -----------AFAAQLG--LKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIA------------------ 216 (431)
T ss_pred -----------HHHHHcC--CCcceEEechhccCCcccccccCCCcccCccHHHHHhhcccc------------------
Confidence 0000000 001123455777777653 233333211110
Q ss_pred cccccCCCCCeEEEEEEEEec--CCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEE
Q 004615 345 LERAASDDEPFAGLAFKIMSD--PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIA 422 (742)
Q Consensus 345 ~~~~~~~~~p~~~~V~k~~~~--~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~ 422 (742)
......||+..|-.+... .++|. -|+|-||++++||+|...+.|++.+|++|..+.| +.++|.||+-|.
T Consensus 217 ---~~~~~~~~RfPVQ~V~Rp~~dfRGy--aGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg----~~~~A~aG~aVt 287 (431)
T COG2895 217 ---DDRSAKAFRFPVQYVNRPNLDFRGY--AGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG----ELAQASAGEAVT 287 (431)
T ss_pred ---ccccccceeeceEEecCCCCccccc--ceeeeccceecCCeEEEccCCCeeeEEEEeccCC----chhhccCCceEE
Confidence 111356677666555432 23332 4899999999999999999999999999988865 478899999999
Q ss_pred EcCCC--ccccCceeecCCCcccccccCCCCceEEEEEEeCCCcC
Q 004615 423 LAGLK--DTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKAD 465 (742)
Q Consensus 423 I~gl~--~~~tGdTL~~~~~~~~l~~i~~~~Pvv~~~Iep~~~~d 465 (742)
+.=-+ ++..||.|+..+.++. ..-.+..-++.+.=+|..++.
T Consensus 288 l~L~deidisRGd~i~~~~~~~~-~~~~f~A~vvWm~~~pl~pGr 331 (431)
T COG2895 288 LVLADEIDISRGDLIVAADAPPA-VADAFDADVVWMDEEPLLPGR 331 (431)
T ss_pred EEEcceeecccCcEEEccCCCcc-hhhhcceeEEEecCCCCCCCc
Confidence 86322 3789999999876554 233455678888888877764
No 63
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.3e-26 Score=235.05 Aligned_cols=309 Identities=19% Similarity=0.296 Sum_probs=223.8
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--------------------------C
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------------------K 119 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--------------------------~ 119 (742)
+-.-||+.+||++|||+|+.-.+.. ..+|.+.+|.+|||||+..++..... -
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG--vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~ 85 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG--VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELV 85 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc--eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEE
Confidence 3457999999999999998877766 78899999999999999998866540 1
Q ss_pred eEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCC-CcccHHHHHHHHHHcCCCeE-EEEecccCCCCChHHHHHHHH
Q 004615 120 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIV 197 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~G-v~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~~~~~~~~i~ 197 (742)
+++.|+|+|||.-+...|.++..+.|||||||+|.|- +|+||++++-.+.-.|+.-| ++-||+|+...+ +.
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E--~A----- 158 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRE--RA----- 158 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHH--HH-----
Confidence 6899999999999999999999999999999999986 79999999999999998875 677999987532 11
Q ss_pred HHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhc
Q 004615 198 TNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLE 277 (742)
Q Consensus 198 ~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~ 277 (742)
+|.|
T Consensus 159 --------------------------------------------------------------------------lE~y-- 162 (415)
T COG5257 159 --------------------------------------------------------------------------LENY-- 162 (415)
T ss_pred --------------------------------------------------------------------------HHHH--
Confidence 1222
Q ss_pred CCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEE
Q 004615 278 GNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAG 357 (742)
Q Consensus 278 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 357 (742)
+++++.++-.+. .-.|+++.||.++.|++.|+++|.+++|.|.. |.+.|..+
T Consensus 163 ------~qIk~FvkGt~A--e~aPIIPiSA~~~~NIDal~e~i~~~IptP~r--------------------d~~~~p~m 214 (415)
T COG5257 163 ------EQIKEFVKGTVA--ENAPIIPISAQHKANIDALIEAIEKYIPTPER--------------------DLDKPPRM 214 (415)
T ss_pred ------HHHHHHhccccc--CCCceeeehhhhccCHHHHHHHHHHhCCCCcc--------------------CCCCCceE
Confidence 223333222221 12489999999999999999999999999976 34788999
Q ss_pred EEEEEEec--------CCCceEEEEEEEeeEecCCCEEEeCC------CCceE---ecceEEEeecCceeecccccCCCE
Q 004615 358 LAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNAN------KGKKE---RIGRLLEMHANSREDVKVALAGDI 420 (742)
Q Consensus 358 ~V~k~~~~--------~~~G~l~~~RV~sG~L~~gd~v~~~~------~~~~~---kV~~l~~~~g~~~~~v~~a~aGdI 420 (742)
||.+.|.. .-+|-+.-|-+..|.|+.||++-+-+ .++.. -.+++..+++.. ..+++|.+|-.
T Consensus 215 ~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~-~~~~ea~PGGL 293 (415)
T COG5257 215 YVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGG-EDVEEARPGGL 293 (415)
T ss_pred EEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCC-eeeeeccCCce
Confidence 99999853 22466888999999999999998543 12111 133444555443 67999999999
Q ss_pred EEE-cCCCc-cccCceeecCCCcccccccCCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEe
Q 004615 421 IAL-AGLKD-TITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG 498 (742)
Q Consensus 421 v~I-~gl~~-~~tGdTL~~~~~~~~l~~i~~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g 498 (742)
++| ++|+- +-++|-|+..= .=.+-..|+...++.++. .-|+++.-.+-.++++.- .++|.++..
T Consensus 294 vgvGT~lDP~ltKaD~L~G~V---~G~pG~lPpv~~~~~ie~----------~LL~RvvG~~~e~kvepi-k~~E~Lml~ 359 (415)
T COG5257 294 VGVGTKLDPTLTKADALVGQV---VGKPGTLPPVWTSIRIEY----------HLLERVVGTKEELKVEPI-KTNEVLMLN 359 (415)
T ss_pred EEEecccCcchhhhhhhcccc---ccCCCCCCCceEEEEEEe----------eehhhhhCcccccccccc-cCCCeEEEE
Confidence 999 66764 34566554320 001112334444455553 234555555566666542 578887776
Q ss_pred cChh
Q 004615 499 MGEL 502 (742)
Q Consensus 499 ~Gel 502 (742)
.|--
T Consensus 360 VGta 363 (415)
T COG5257 360 VGTA 363 (415)
T ss_pred eecc
Confidence 6643
No 64
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.94 E-value=5.3e-26 Score=261.34 Aligned_cols=287 Identities=22% Similarity=0.275 Sum_probs=194.7
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec------C-------e-----EEEEEcCC
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------K-------H-----RINIIDTP 128 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~------~-------~-----~inlIDTP 128 (742)
+.+.|+++||++|||||++..+. |+.+.+.. ..|+|.+..+..+.+. + . .++|+|||
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~-~~~v~~~~----~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTP 79 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIR-GTAVAAKE----AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTP 79 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh-CcccccCC----CCceEEeeceeeccccccccccceeccccccccccCCEEEEECC
Confidence 45799999999999999988874 33333332 2456655544433332 0 1 27999999
Q ss_pred CccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC-CChHHHHHHHHHHhCCcceEE
Q 004615 129 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVV 207 (742)
Q Consensus 129 Gh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~-~~~~~~~~~i~~~l~~~~~~~ 207 (742)
||.+|...+.++++.+|++|+|+|+.+|++.||...++.+...++|+++++||+|+.. +....-. .+.+.+.
T Consensus 80 G~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~-~~~e~~~------ 152 (586)
T PRK04004 80 GHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDA-PFLESIE------ 152 (586)
T ss_pred ChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCc-hHHHHHh------
Confidence 9999999999999999999999999999999999999999999999999999999852 1100000 0000000
Q ss_pred EeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHH
Q 004615 208 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 287 (742)
Q Consensus 208 ~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~ 287 (742)
.-+....+.+.+...++. .+|.+..+..+.+.
T Consensus 153 ------------------------------------~~~~~v~~~f~~~l~ev~------------~~L~~~g~~~e~~~ 184 (586)
T PRK04004 153 ------------------------------------KQSQRVQQELEEKLYELI------------GQLSELGFSADRFD 184 (586)
T ss_pred ------------------------------------hhhHHHHHHHHHHHHHHH------------HHHHhcCCChhhhh
Confidence 000000111111111111 23333333333322
Q ss_pred HHHHhhcccCcceeeeeccccCCCChHHHHHHHHH----hCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEE
Q 004615 288 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD----YLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 363 (742)
Q Consensus 288 ~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~----~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 363 (742)
. ++. .+..+|++++||++|.|++.|++.+.. ++|.+.. .+++.|+.+.|++++
T Consensus 185 ~-~~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~-------------------~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 185 R-VKD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLK-------------------IDVEGPGKGTVLEVK 241 (586)
T ss_pred h-hhc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhc-------------------cCCCCCeEEEEEEEE
Confidence 2 111 134578999999999999999998864 3444433 234789999999999
Q ss_pred ecCCCceEEEEEEEeeEecCCCEEEeCCCCc--eEecceEEEee--------cCceeecccccCCCEEEE--cCCCcccc
Q 004615 364 SDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMH--------ANSREDVKVALAGDIIAL--AGLKDTIT 431 (742)
Q Consensus 364 ~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~--~~kV~~l~~~~--------g~~~~~v~~a~aGdIv~I--~gl~~~~t 431 (742)
.+++.|.+++++|++|+|++||.|...+.+. ..+|+.|+... ++....++++.|..-+-| .||+++..
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~ 321 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALA 321 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCC
Confidence 9999999999999999999999999877654 35888887652 124466777777665555 48888878
Q ss_pred Cceee
Q 004615 432 GETLC 436 (742)
Q Consensus 432 GdTL~ 436 (742)
|+.+.
T Consensus 322 g~~~~ 326 (586)
T PRK04004 322 GSPLR 326 (586)
T ss_pred CCeEE
Confidence 88764
No 65
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.94 E-value=5.9e-25 Score=227.25 Aligned_cols=280 Identities=24% Similarity=0.307 Sum_probs=219.4
Q ss_pred CCccEEEEEeecccCccccccee-----ccCC----ccCCCcHhHHhhcceEecceEEEEec------------------
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEV-----HEGT----ATMDWMEQEQERGITITSAATTTYWN------------------ 118 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v-----~~g~----~~~D~~~~E~erGITi~s~~~~~~~~------------------ 118 (742)
....++++.||++|||+|+.|.+ |+|+ +++|-.+.|.+||.|-..+..-+-++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 35689999999999999977655 6665 88999999999999877776666552
Q ss_pred -----CeEEEEEcCCCccCcHHHHHHHHH--hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC-ChH
Q 004615 119 -----KHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFF 190 (742)
Q Consensus 119 -----~~~inlIDTPGh~DF~~ev~~al~--~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~-~~~ 190 (742)
++.+.|+||-||.-+...+.++|- ..|..+|||.|.+|++-.|++++..+...++|+|++++|+|.... .+.
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~ 274 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQ 274 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHH
Confidence 478999999999999999999995 689999999999999999999999999999999999999998754 478
Q ss_pred HHHHHHHHHhCC-cceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCH
Q 004615 191 RTRDMIVTNLGA-KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDD 269 (742)
Q Consensus 191 ~~~~~i~~~l~~-~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd 269 (742)
.+.++|.+.|.. +-+|+.+ . +.|
T Consensus 275 ~v~~ei~~~Lk~v~Rip~~v--k-----------------------------------------------------~~~- 298 (527)
T COG5258 275 GVVEEISALLKRVGRIPLIV--K-----------------------------------------------------DTD- 298 (527)
T ss_pred HHHHHHHHHHHHhcccceee--e-----------------------------------------------------ccc-
Confidence 888888877643 1111111 0 001
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhcccCc-ceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccc
Q 004615 270 EAMESYLEGNEPDEETIKKLIRKGTIAGS-FVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERA 348 (742)
Q Consensus 270 ~lle~yl~~~~~~~~~l~~~l~~~~~~~~-~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~ 348 (742)
+...+. .+...++ ++|||..|+.+|.|++ ||+.+..+||.-..
T Consensus 299 ---------------d~v~aa-~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~------------------- 342 (527)
T COG5258 299 ---------------DVVLAA-KAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRR------------------- 342 (527)
T ss_pred ---------------hhHHhh-hhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcccc-------------------
Confidence 111111 1222344 8999999999999998 67777778875321
Q ss_pred cCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCC--C--ceEecceEEEeecCceeecccccCCCEEEE-
Q 004615 349 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--G--KKERIGRLLEMHANSREDVKVALAGDIIAL- 423 (742)
Q Consensus 349 ~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~--~--~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I- 423 (742)
.+..+||.|||.|++...++|.++.|-|-+|.|+.||+|+..+. | ...+|++|.+ | +..|+.|.||+|+++
T Consensus 343 ~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIem-h---~~rvdsa~aG~iig~A 418 (527)
T COG5258 343 WDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEM-H---HYRVDSAKAGSIIGIA 418 (527)
T ss_pred cCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEE-e---eEEeccccCCcEEEEE
Confidence 12479999999999999999999999999999999999997653 3 3567888853 3 367999999999987
Q ss_pred -cCCCc--cccCceeecCCCc
Q 004615 424 -AGLKD--TITGETLCDADHP 441 (742)
Q Consensus 424 -~gl~~--~~tGdTL~~~~~~ 441 (742)
.|.+. +..|.+|+....|
T Consensus 419 l~gv~~e~lerGMVl~~~~~p 439 (527)
T COG5258 419 LKGVEKEELERGMVLSAGADP 439 (527)
T ss_pred ecccCHHHHhcceEecCCCCc
Confidence 56654 7899999876333
No 66
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.94 E-value=4.1e-26 Score=210.54 Aligned_cols=119 Identities=50% Similarity=0.864 Sum_probs=113.1
Q ss_pred ceeeEEeeeeccce-eeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccC
Q 004615 524 PQVNYRESISKVSE-VKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAG 602 (742)
Q Consensus 524 p~V~yrEti~~~~~-~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g 602 (742)
|+|+|||||+++++ ..+.|+++.|+.++|+++.++++|.+ +.++.|++++.++.+|++|+++|++||++++++|||+|
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~-~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl~g 79 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE-GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPLCG 79 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS-TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTTTS
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc-cCCceeeeccccccccHHHHHHHhhhhhheecccccCC
Confidence 89999999999999 89999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCeeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 004615 603 FPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 643 (742)
Q Consensus 603 ~pv~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~ 643 (742)
|||+||+|+|.++.+|+++|++.+|+.|+++||++||++|+
T Consensus 80 ~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 80 YPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp SEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred CceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 67
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.93 E-value=8.7e-26 Score=205.96 Aligned_cols=115 Identities=28% Similarity=0.504 Sum_probs=107.0
Q ss_pred eeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCe
Q 004615 526 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPV 605 (742)
Q Consensus 526 V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv 605 (742)
|+|||||+++++. .+.++.++++|||+|+++++|++++.|+.|.+++.++.+|++|+++|++|++++|++||| ||||
T Consensus 1 VaYRETI~~~~~~--~~~~~~~~~~~~a~v~l~veP~~~g~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~pv 77 (115)
T cd01684 1 VIYKERPLGTGEG--VEHIEVPPNPFWATVGLRVEPLPRGSGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEV 77 (115)
T ss_pred CceEEEeCCcEEE--EEEEccCCCcEEEEEEEEEEECCCCCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CCCE
Confidence 7899999999763 444455578889999999999998999999999999999999999999999999999999 9999
Q ss_pred eeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 004615 606 VDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 643 (742)
Q Consensus 606 ~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~ 643 (742)
+||+|+|.++.+|++||++++|+.|+++|+++|+.+|+
T Consensus 78 ~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~~a~~~a~ 115 (115)
T cd01684 78 TDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKAG 115 (115)
T ss_pred eeEEEEEEEeeecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
No 68
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.93 E-value=9.5e-24 Score=241.66 Aligned_cols=288 Identities=22% Similarity=0.306 Sum_probs=192.2
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC------------------eEEEEEcCC
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK------------------HRINIIDTP 128 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~------------------~~inlIDTP 128 (742)
+.+.|+++||+++|||+++..+...+ +. .+..+|+|.+..+..+.+.. ..++|+|||
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~-v~----~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTp 77 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSA-VA----KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTP 77 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc-cc----cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECC
Confidence 35789999999999999988875532 11 12336688776666665531 138899999
Q ss_pred CccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEE
Q 004615 129 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 208 (742)
Q Consensus 129 Gh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~ 208 (742)
||.+|...+.++++.+|++|+|+|+.+|+..||...++.++..++|.|+++||+|+... . ....+..
T Consensus 78 G~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~-~-------~~~~~~~----- 144 (590)
T TIGR00491 78 GHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPG-W-------RSHEGRP----- 144 (590)
T ss_pred CcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccch-h-------hhccCch-----
Confidence 99999999999999999999999999999999999999999999999999999998631 0 0000000
Q ss_pred eccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHH
Q 004615 209 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 288 (742)
Q Consensus 209 ~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~ 288 (742)
|-+ ....-+........+....++..+++. .+..+.+..
T Consensus 145 ----------------------f~e-------~sak~~~~v~~~~~~~~~~lv~~l~~~------------G~~~e~~~~ 183 (590)
T TIGR00491 145 ----------------------FME-------SFSKQEIQVQQNLDTKVYNLVIKLHEE------------GFEAERFDR 183 (590)
T ss_pred ----------------------HHH-------HHHhhhHHHHHHHHHHHHHHHHHHHhc------------CccHHhhhh
Confidence 000 000000000111111111122222211 111111111
Q ss_pred HHHhhcccCcceeeeeccccCCCChHHHHHHHHHh----CCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEe
Q 004615 289 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDY----LPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 364 (742)
Q Consensus 289 ~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~----lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 364 (742)
+. ..+..+|++++||++|.|++.|+++|... ++... ..++++|+.+.|..++.
T Consensus 184 -i~---~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l-------------------~~~~~~~~~~~V~e~~~ 240 (590)
T TIGR00491 184 -VT---DFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQL-------------------KLEEEGPARGTILEVKE 240 (590)
T ss_pred -hh---hcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhh-------------------ccCCCCCeEEEEEEEEE
Confidence 10 12345789999999999999999988653 22221 12357899999999999
Q ss_pred cCCCceEEEEEEEeeEecCCCEEEeCCCCc--eEecceEEEeec--------Cceeeccccc--CCCEEEEcCCCccccC
Q 004615 365 DPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHA--------NSREDVKVAL--AGDIIALAGLKDTITG 432 (742)
Q Consensus 365 ~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~--~~kV~~l~~~~g--------~~~~~v~~a~--aGdIv~I~gl~~~~tG 432 (742)
+++.|.++.++|++|+|++||.|...+.+. ..+|..|+...+ .....++++. +|--+.+.||+++..|
T Consensus 241 ~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG 320 (590)
T TIGR00491 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAG 320 (590)
T ss_pred cCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCC
Confidence 999999999999999999999999887664 457777765432 1234556644 4455556788877778
Q ss_pred ceee
Q 004615 433 ETLC 436 (742)
Q Consensus 433 dTL~ 436 (742)
+.+.
T Consensus 321 ~~~~ 324 (590)
T TIGR00491 321 SPIR 324 (590)
T ss_pred CEEE
Confidence 7764
No 69
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.92 E-value=2.1e-24 Score=220.53 Aligned_cols=118 Identities=28% Similarity=0.366 Sum_probs=106.1
Q ss_pred EEEEEeecccCccccccee-------c-------------cCC------ccCCCcHhHHhhcceEecceEEEEecCeEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEV-------H-------------EGT------ATMDWMEQEQERGITITSAATTTYWNKHRIN 123 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v-------~-------------~g~------~~~D~~~~E~erGITi~s~~~~~~~~~~~in 123 (742)
||+++||++|||||+++.+ + .|+ +++|++++|++||+|++++..++.|++++++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 7999999999999966544 1 344 3899999999999999999999999999999
Q ss_pred EEcCCCccCcHHHHHHHHHhhceEEEEEeCCC-------CCcccHHHHHHHHHHcCC-CeEEEEecccCCCC
Q 004615 124 IIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------GVEPQSETVWRQADKYGV-PRICFVNKMDRLGA 187 (742)
Q Consensus 124 lIDTPGh~DF~~ev~~al~~~DgailVVDa~~-------Gv~~qT~~v~~~a~~~~i-p~il~INK~Dr~~~ 187 (742)
|+|||||.+|..++.++++.+|++|+|||+.+ |++.||+++|..+...++ |+|+|+||||+..+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 99999999999999999999999999999998 678899999999988885 55679999999843
No 70
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.5e-24 Score=217.64 Aligned_cols=246 Identities=19% Similarity=0.235 Sum_probs=201.9
Q ss_pred ccEEEEEeecccCcccccceecc--CCccCCCcHhHHhhcceEecceEEEEec---------CeEEEEEcCCCccCcHHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHE--GTATMDWMEQEQERGITITSAATTTYWN---------KHRINIIDTPGHVDFTLE 136 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~--g~~~~D~~~~E~erGITi~s~~~~~~~~---------~~~inlIDTPGh~DF~~e 136 (742)
.-|++++||+++||+++...+.. .+...|..++-++||||.+.....+... ..+++|+|||||......
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 36999999999999998776643 3477899999999999999998888762 367899999999999999
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChH-HHHHHHHHHhCCcceEEEeccCCCC
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFF-RTRDMIVTNLGAKPLVVQLPVGAED 215 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~-~~~~~i~~~l~~~~~~~~~Pi~~~~ 215 (742)
++.+..+.|.+++|||+..|.+.||-+.+-.........+++|||+|....+.. ..++.+..
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~k----------------- 149 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAK----------------- 149 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHH-----------------
Confidence 999999999999999999999999999998888888889999999997654311 11111111
Q ss_pred cceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcc
Q 004615 216 NFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTI 295 (742)
Q Consensus 216 ~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~ 295 (742)
.+++.|.....
T Consensus 150 ---------------------------------------------------------------------k~~KtLe~t~f 160 (522)
T KOG0461|consen 150 ---------------------------------------------------------------------KVRKTLESTGF 160 (522)
T ss_pred ---------------------------------------------------------------------HHHHHHHhcCc
Confidence 11222221111
Q ss_pred cCcceeeeeccccCC----CChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceE
Q 004615 296 AGSFVPVLCGSAFKN----KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 371 (742)
Q Consensus 296 ~~~~~Pv~~~Sa~~~----~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l 371 (742)
+...|++..||+.| .++++|.+++....--|.. |+.+||.++|...+..++.|++
T Consensus 161 -~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R--------------------d~~gpflm~vDHCF~IKGQGTV 219 (522)
T KOG0461|consen 161 -DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR--------------------DEEGPFLMAVDHCFAIKGQGTV 219 (522)
T ss_pred -CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc--------------------CCCCCeEEEeeeeEEeccCceE
Confidence 23468999999999 8999999999988877765 3589999999999999999999
Q ss_pred EEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEc
Q 004615 372 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA 424 (742)
Q Consensus 372 ~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~ 424 (742)
..|.|.+|.++.|+.|-.+.-+...||+.+.+++ .+|..|.+||..++.
T Consensus 220 ~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~----~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 220 LTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFK----QRVTSAAAGDRAGFC 268 (522)
T ss_pred EeeeEEEeEEecCcEEeecccchhhhhhhHHHHh----hhhhhhhcccceeee
Confidence 9999999999999999988777777888886655 679999999999873
No 71
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=8.1e-24 Score=220.43 Aligned_cols=273 Identities=19% Similarity=0.236 Sum_probs=203.3
Q ss_pred CCCccEEEEEeecccCccccc-------ceeccC-------------------CccCCCcHhHHhhcceEecceEEEEec
Q 004615 65 PRSRRQFSVFAMAAEGRNYKI-------GEVHEG-------------------TATMDWMEQEQERGITITSAATTTYWN 118 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~-------g~v~~g-------------------~~~~D~~~~E~erGITi~s~~~~~~~~ 118 (742)
+....|+.++||+++||++.- |.|+.. +|.||++.+||++|-|+......|+..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 356789999999999999854 444442 389999999999999999999999999
Q ss_pred CeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCC-------CcccHHHHHHHHHHcCCCe-EEEEecccCCCCC--
Q 004615 119 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-- 188 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~G-------v~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~-- 188 (742)
..+++++|+|||.-|..+++.+..++|.+++|+.|..| -..||+++..+|+..++.. |++|||||.+..+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 99999999999999999999999999999999999876 3579999999999999988 5899999988654
Q ss_pred ---hHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHH
Q 004615 189 ---FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 265 (742)
Q Consensus 189 ---~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~ 265 (742)
++++.+.+...|
T Consensus 236 ~eRy~E~~~k~~~fL----------------------------------------------------------------- 250 (501)
T KOG0459|consen 236 NERYEECKEKLQPFL----------------------------------------------------------------- 250 (501)
T ss_pred hhhHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 233333332222
Q ss_pred ccCHHHHHHHhcCCCCCHHHHHHHHHhhcccC-cceeeeeccccCCCChHHHHHHHHH--hCCCCCCCCCCCCCCCCCcc
Q 004615 266 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAG-SFVPVLCGSAFKNKGVQPLLDAVVD--YLPSPLDLPAMKGTDPENPE 342 (742)
Q Consensus 266 e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~-~~~Pv~~~Sa~~~~gv~~LLd~I~~--~lPsP~~~~~~~~~~~~~~~ 342 (742)
+...... .-.-.+++|.++|.++....+.++- +.|++.+.- +
T Consensus 251 -------------------------r~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~l-----d----- 295 (501)
T KOG0459|consen 251 -------------------------RKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYL-----D----- 295 (501)
T ss_pred -------------------------HHhcccCCCCceeeecccccccchhhcccccCCcccCCccceeh-----h-----
Confidence 1110000 0011334577777776655542221 112222100 0
Q ss_pred cccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEE
Q 004615 343 ATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIA 422 (742)
Q Consensus 343 ~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~ 422 (742)
......-+.++|+++-|..-+.| .|++.+|+|.||++++||.+..++++....|..||. +-.+++.+.+|+.+-
T Consensus 296 ~l~~~~R~~~GP~~~pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~----ddvE~~~~~pGenvk 369 (501)
T KOG0459|consen 296 ELPHLERILNGPIRCPVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYS----DDVETDRVAPGENVK 369 (501)
T ss_pred ccCcccccCCCCEEeehhhhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEec----ccceeeeccCCcceE
Confidence 00011223589999988766654 479999999999999999999999988888888862 347899999999998
Q ss_pred E--cCCC--ccccCceeecCCCccc
Q 004615 423 L--AGLK--DTITGETLCDADHPIL 443 (742)
Q Consensus 423 I--~gl~--~~~tGdTL~~~~~~~~ 443 (742)
| .|++ ++.+|-+||++.+++.
T Consensus 370 ~rlkgieeedi~~GfiL~~~~n~~~ 394 (501)
T KOG0459|consen 370 LRLKGIEEEDISPGFILCSPNNPCK 394 (501)
T ss_pred EEecccchhhccCceEEecCCCccc
Confidence 7 5665 3899999999887763
No 72
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.91 E-value=4.5e-24 Score=195.53 Aligned_cols=116 Identities=58% Similarity=1.008 Sum_probs=112.9
Q ss_pred EEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeee
Q 004615 528 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVD 607 (742)
Q Consensus 528 yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~ 607 (742)
|||||+++++..+.|++++||++|||+|+++++|++++.++.|.+++.++.+|++|+++|++|+++++++|||+||||+|
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~ 80 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRGSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVD 80 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCCCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcccc
Confidence 89999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 004615 608 VRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 643 (742)
Q Consensus 608 v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~ 643 (742)
|+|+|.++.+|++||++.+|+.|+++|+++|+.+|+
T Consensus 81 v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 81 VKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred EEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999874
No 73
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.90 E-value=8.3e-24 Score=214.41 Aligned_cols=118 Identities=29% Similarity=0.346 Sum_probs=107.3
Q ss_pred EEEEEeecccCccccccee-------c-------------------cCCccCCCcHhHHhhcceEecceEEEEecCeEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEV-------H-------------------EGTATMDWMEQEQERGITITSAATTTYWNKHRIN 123 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v-------~-------------------~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~in 123 (742)
||+|+||+++||||+++.+ . ++++++|+.++|++||+|+++....+.|+++.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6999999999999965544 2 3467899999999999999999999999999999
Q ss_pred EEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCCCC
Q 004615 124 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 187 (742)
Q Consensus 124 lIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~ 187 (742)
|+|||||.+|..++..+++.+|++|+|||+.+|+..|++.++..+...++|. |+|+||||+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 9999999999999999999999999999999999999999999999888775 668999998753
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=5.6e-23 Score=202.68 Aligned_cols=128 Identities=36% Similarity=0.532 Sum_probs=110.8
Q ss_pred cEEEEEeecccCcccccceecc--C--------CccCCCcHhHHhhcceEecceEEEEe-----cCeEEEEEcCCCccCc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHE--G--------TATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDTPGHVDF 133 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~--g--------~~~~D~~~~E~erGITi~s~~~~~~~-----~~~~inlIDTPGh~DF 133 (742)
|||+++||+++|||++++++-. | +.++|+.+.|++||+|+++..+.+.| +++.++|+|||||.+|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 7999999999999998877632 1 26889999999999999999988877 4678999999999999
Q ss_pred HHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHH
Q 004615 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMI 196 (742)
Q Consensus 134 ~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i 196 (742)
...+.++++.+|++|+|+|+.++...|+...|.++...++|+++++||+|+...+..+..+++
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~ 143 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQI 143 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHH
Confidence 999999999999999999999999999999998888889999999999998654433333333
No 75
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.90 E-value=2.3e-23 Score=191.05 Aligned_cols=116 Identities=35% Similarity=0.617 Sum_probs=112.6
Q ss_pred EEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCCCceEEecccCCCCCcccHHHHHHHHHHHHHcCcccCCCeee
Q 004615 528 YRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVD 607 (742)
Q Consensus 528 yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~ 607 (742)
|||||.++++..+++++++||+++|++|.++++|+++++++.|.+++.++.+|++|+++|++||++++++|||+||||+|
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~ 80 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERGSGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTD 80 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCCCCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCceee
Confidence 99999999988899999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 004615 608 VRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 643 (742)
Q Consensus 608 v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~ 643 (742)
++|+|.++.+|..++++++|++|+++||++||.+|+
T Consensus 81 v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 81 VRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred EEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999874
No 76
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=1.5e-23 Score=211.63 Aligned_cols=116 Identities=21% Similarity=0.277 Sum_probs=105.0
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec---------------------------C--
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---------------------------K-- 119 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~---------------------------~-- 119 (742)
+||+++||+.+||||++..+.. +.+|+.++|++||+|+..+...+.|. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~--~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG--VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGE 78 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCc
Confidence 5899999999999999887753 45899999999999999999999985 4
Q ss_pred ----eEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCC-CCcccHHHHHHHHHHcCCC-eEEEEecccCCC
Q 004615 120 ----HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA-GVEPQSETVWRQADKYGVP-RICFVNKMDRLG 186 (742)
Q Consensus 120 ----~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~-Gv~~qT~~v~~~a~~~~ip-~il~INK~Dr~~ 186 (742)
++++|||||||.+|..++.++++.+|++++|||+.+ ++..||..+|..+...+++ +|+++||+|+..
T Consensus 79 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 79 TKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 899999999999999999999999999999999998 5788999999988888875 678999999865
No 77
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.90 E-value=4.2e-23 Score=210.06 Aligned_cols=117 Identities=37% Similarity=0.525 Sum_probs=106.5
Q ss_pred cEEEEEeecccCcccccceecc-------------C-CccCCCcHhHHhhcceEecceEEEEec-----CeEEEEEcCCC
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHE-------------G-TATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDTPG 129 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~-------------g-~~~~D~~~~E~erGITi~s~~~~~~~~-----~~~inlIDTPG 129 (742)
|||+++||+++|||++++++-. + .+++|.+++|++||+|+++...++.|. .+.++|+||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 7999999999999997765421 1 257899999999999999999999885 38999999999
Q ss_pred ccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 130 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 130 h~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
|.+|..++.++++.+|++|+|+|+.+|...+++.+++.+...++|.++++||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999999999999999999999999999999999999988899999999999986
No 78
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.89 E-value=8.1e-22 Score=235.37 Aligned_cols=304 Identities=20% Similarity=0.224 Sum_probs=199.9
Q ss_pred HhHHhhcceEecceEEEEecCe------------------EEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCccc
Q 004615 99 EQEQERGITITSAATTTYWNKH------------------RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 160 (742)
Q Consensus 99 ~~E~erGITi~s~~~~~~~~~~------------------~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~q 160 (742)
.++..+|||++..+..+.++.- .++|+|||||.+|...+.++++.+|++++|+|+.+|++.|
T Consensus 487 ~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~q 566 (1049)
T PRK14845 487 AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQ 566 (1049)
T ss_pred ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHh
Confidence 4556789999999999988521 2899999999999998999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCC-CChHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCCce
Q 004615 161 SETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAK 239 (742)
Q Consensus 161 T~~v~~~a~~~~ip~il~INK~Dr~~-~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~ 239 (742)
|..+++.+...++|+|+++||+|+.. ++...
T Consensus 567 T~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~------------------------------------------------ 598 (1049)
T PRK14845 567 TIEAINILRQYKTPFVVAANKIDLIPGWNISE------------------------------------------------ 598 (1049)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCcccccccc------------------------------------------------
Confidence 99999999999999999999999852 22000
Q ss_pred eEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHH
Q 004615 240 FAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDA 319 (742)
Q Consensus 240 ~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~ 319 (742)
..++-..+..+.+...+++-+.+.+.-.+ |....+..+.+ ..+. ..+..+|++++||++|.|++.|+++
T Consensus 599 --~~~~~~~~~~q~~~~~~el~~~l~~v~~~-----L~~~G~~~e~~-~~~~---d~~~~v~iVpVSA~tGeGId~Ll~~ 667 (1049)
T PRK14845 599 --DEPFLLNFNEQDQHALTELEIKLYELIGK-----LYELGFDADRF-DRVQ---DFTRTVAIVPVSAKTGEGIPELLMM 667 (1049)
T ss_pred --chhhhhhhhhhHHHHHHHHHHHHHHHhhH-----HHhcCcchhhh-hhhh---hcCCCceEEEEEcCCCCCHHHHHHH
Confidence 00000011111111111111111100000 01011111111 0111 1145689999999999999999998
Q ss_pred HHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCc--eEe
Q 004615 320 VVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KER 397 (742)
Q Consensus 320 I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~--~~k 397 (742)
|....+.-.+ . ....++++|+.+.|..++.+++.|.++.+.|++|+|++||.|...+.++ ..+
T Consensus 668 l~~l~~~~l~-~--------------~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~k 732 (1049)
T PRK14845 668 VAGLAQKYLE-E--------------RLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTK 732 (1049)
T ss_pred HHHhhHHhhh-h--------------hhccCCCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEE
Confidence 8754332111 0 0122357899999999999999999999999999999999999987654 456
Q ss_pred cceEEEe--------ecCceeecccccCCCEEEE--cCCCccccCceeecCCCccc-----------ccccCCCCceEEE
Q 004615 398 IGRLLEM--------HANSREDVKVALAGDIIAL--AGLKDTITGETLCDADHPIL-----------LERMDFPDPVIKV 456 (742)
Q Consensus 398 V~~l~~~--------~g~~~~~v~~a~aGdIv~I--~gl~~~~tGdTL~~~~~~~~-----------l~~i~~~~Pvv~~ 456 (742)
|..|+.. .+.....++++.|+.-|-| .||+++..|+.+.-..+... +....+....+.+
T Consensus 733 VRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v 812 (1049)
T PRK14845 733 VRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRIVPTKEKIEKAKEEVMKEVEEAKIETDKEGI 812 (1049)
T ss_pred EEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCcceeeE
Confidence 7766532 1223467888888887777 48988989988753321100 0111122334566
Q ss_pred EEEeCCCcCHHHHHHHHHHH
Q 004615 457 AIEPKTKADIDKMANGLIKL 476 (742)
Q Consensus 457 ~Iep~~~~d~~kL~~aL~~L 476 (742)
.|.+...+..+.|.++|+++
T Consensus 813 ivKaDt~GSlEAl~~~L~~~ 832 (1049)
T PRK14845 813 LIKADTLGSLEALANELRKA 832 (1049)
T ss_pred EEEecccchHHHHHHHHHhC
Confidence 66666666666666666654
No 79
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.89 E-value=4.2e-23 Score=190.36 Aligned_cols=116 Identities=23% Similarity=0.308 Sum_probs=106.3
Q ss_pred eeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccCCC----CceEEecccCCCCCcccHHHHHHHHHHHHHcCccc
Q 004615 526 VNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGS----GYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLA 601 (742)
Q Consensus 526 V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~~~----~~~f~~~~~~~~i~~~~~~~i~~g~~~a~~~Gpl~ 601 (742)
|+|||||+++++..++|++|+||++||++|.++++|++++. ++.|.+.+ ++.+|++|+++|++|+++++++|||+
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~ 79 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGPLL 79 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCcc
Confidence 78999999999888999999999999999999999998766 46676555 88899999999999999999999999
Q ss_pred CCCeeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 004615 602 GFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAG 643 (742)
Q Consensus 602 g~pv~~v~v~l~d~~~~~~ds~~~~f~~a~~~a~~~a~~~a~ 643 (742)
||||+||+|+|.++.+|+++|++..+ .|++.||++|+.+|+
T Consensus 80 G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~~al~~a~ 120 (120)
T cd01693 80 GFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQKALKSAG 120 (120)
T ss_pred CCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHHHHHHhcc
Confidence 99999999999999999988887766 889999999999874
No 80
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=1.7e-22 Score=202.44 Aligned_cols=133 Identities=35% Similarity=0.526 Sum_probs=118.2
Q ss_pred CccEEEEEeecccCcccccceecc--C---------CccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHE--G---------TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 135 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~--g---------~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ 135 (742)
.+|||+++||+++|||++++++-. | .+++|+.+.|+.+|+|+......+.|+++.++|+|||||.+|..
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG 80 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH
Confidence 379999999999999997766532 2 36789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHH
Q 004615 136 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199 (742)
Q Consensus 136 ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~ 199 (742)
.+..+++.+|++++|+|+.+|+..+++.+++.+...++|+++++||+|+...++..+++++.+.
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 144 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDL 144 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998899999999999999876666556555543
No 81
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=3.4e-22 Score=200.02 Aligned_cols=117 Identities=23% Similarity=0.369 Sum_probs=107.5
Q ss_pred EEEEEeecccCcccccceecc--CCccCCCcHhHHhhcceEecceEEEEec--------------CeEEEEEcCCCccCc
Q 004615 70 QFSVFAMAAEGRNYKIGEVHE--GTATMDWMEQEQERGITITSAATTTYWN--------------KHRINIIDTPGHVDF 133 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~--g~~~~D~~~~E~erGITi~s~~~~~~~~--------------~~~inlIDTPGh~DF 133 (742)
||+++||+++|||++++++.. +...+|...+|++||+|++....++.|. ++.++|+|||||.+|
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 81 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASL 81 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHH
Confidence 899999999999999887753 3467899999999999999999999987 789999999999999
Q ss_pred HHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 134 ~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
..++.++++.+|++++|+|+.+|.+.|+...+..+...++|+++++||+|+..
T Consensus 82 ~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 82 IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99999999999999999999999999998888888888999999999999874
No 82
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.88 E-value=1.7e-22 Score=206.34 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=113.0
Q ss_pred EEEEEeecccCcccccceeccCC---------ccCCCcHhHHhhcceEecceE------------------------EEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGT---------ATMDWMEQEQERGITITSAAT------------------------TTY 116 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~---------~~~D~~~~E~erGITi~s~~~------------------------~~~ 116 (742)
+|+++||.++|||++++....|. ..+|.+++|++||+|+..+.. .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 47899999999999877665431 568899999999999754442 233
Q ss_pred ecCeEEEEEcCCCccCcHHHHHHHHH--hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC-ChHHHH
Q 004615 117 WNKHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTR 193 (742)
Q Consensus 117 ~~~~~inlIDTPGh~DF~~ev~~al~--~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~-~~~~~~ 193 (742)
.+++.++|||||||.+|..++.+++. .+|++++|||+.+|++.||+.++.++...++|.++++||+|+... .+.+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~ 160 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETL 160 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHH
Confidence 45789999999999999999999996 799999999999999999999999999999999999999998654 477888
Q ss_pred HHHHHHhC
Q 004615 194 DMIVTNLG 201 (742)
Q Consensus 194 ~~i~~~l~ 201 (742)
+++++.|.
T Consensus 161 ~~l~~~L~ 168 (224)
T cd04165 161 KDLKRILK 168 (224)
T ss_pred HHHHHHhc
Confidence 88888774
No 83
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.87 E-value=1.5e-22 Score=172.20 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=75.0
Q ss_pred eceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCe-EEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004615 648 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGL-KVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 726 (742)
Q Consensus 648 EPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~-~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~ 726 (742)
||||+|||+||++++|+|+++|++|||+|++++..+++. ..|+|++|++|+|||+++||++|+|+|+|+++|+||+++|
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 899999999999999999999999999999988765444 8999999999999999999999999999999999999986
No 84
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.86 E-value=5.9e-22 Score=172.43 Aligned_cols=89 Identities=45% Similarity=0.748 Sum_probs=83.2
Q ss_pred eeeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCcccc
Q 004615 645 KMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDV 724 (742)
Q Consensus 645 ~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~ 724 (742)
+||||||+++|.+|++++|+|+++|++|||+|.++...+++.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999988448899999999999999999999999999999999999999
Q ss_pred CCchHHHHH
Q 004615 725 VPQHIQNQL 733 (742)
Q Consensus 725 v~~~~~~~~ 733 (742)
+++++++++
T Consensus 81 ~~~~~~~~~ 89 (89)
T PF00679_consen 81 VPGDILDRL 89 (89)
T ss_dssp ESHHHHHHH
T ss_pred CCCChhhcC
Confidence 999998874
No 85
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.86 E-value=6.1e-22 Score=170.92 Aligned_cols=83 Identities=54% Similarity=0.947 Sum_probs=79.0
Q ss_pred eeeceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccC
Q 004615 646 MLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVV 725 (742)
Q Consensus 646 LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v 725 (742)
||||||+++|.||++++|+|+++|++|||+|.+++..+ +...|+|.+|+++++||.++||++|+|+|+|+++|+||+++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~ 79 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG-GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEV 79 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC-CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceEC
Confidence 68999999999999999999999999999999999765 67899999999999999999999999999999999999999
Q ss_pred CchH
Q 004615 726 PQHI 729 (742)
Q Consensus 726 ~~~~ 729 (742)
|+++
T Consensus 80 ~~~~ 83 (85)
T smart00838 80 PKSI 83 (85)
T ss_pred Chhh
Confidence 9754
No 86
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.85 E-value=4.6e-21 Score=187.57 Aligned_cols=127 Identities=20% Similarity=0.311 Sum_probs=102.7
Q ss_pred CceeeEEeeeeccceeeEEEeeccCCCccceEEEEEEeeccC--------------------------------------
Q 004615 523 APQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEA-------------------------------------- 564 (742)
Q Consensus 523 ~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~~P~~~-------------------------------------- 564 (742)
+|.|+|||||.+.+.... ..+.. +...++++.++|+++
T Consensus 1 ~P~V~f~ETv~~~s~~~~-~~ks~---nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~i 76 (178)
T cd01683 1 DPVVTFCETVVETSSAKC-FAETP---NKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSI 76 (178)
T ss_pred CCcceEEeeccccCCCce-eeECC---CcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCe
Confidence 599999999997764221 11211 223477888888742
Q ss_pred -------CCCceEEecccCCC----CCcccHHHHHHHHHHHHHcCcccCCCeeeEEEEEEeccccC--CCCCHHHHHHHH
Q 004615 565 -------GSGYEFKSEIKGGA----VPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHD--VDSSVLAFQLAA 631 (742)
Q Consensus 565 -------~~~~~f~~~~~~~~----i~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~--~ds~~~~f~~a~ 631 (742)
...+.|+|.+.+.. +.++++++|++||++|+++||||||||+||+|+|.|+.+|+ .++.+++|.+|+
T Consensus 77 w~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aa 156 (178)
T cd01683 77 WAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTA 156 (178)
T ss_pred EEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHH
Confidence 12367777766433 44678999999999999999999999999999999999998 788899999999
Q ss_pred HHHHHHHHHhcCCeeeeceeEE
Q 004615 632 RGAFREGMRKAGPKMLEPIMKV 653 (742)
Q Consensus 632 ~~a~~~a~~~a~~~LlEPi~~~ 653 (742)
|+||++|+++|+|+||||||+|
T Consensus 157 r~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 157 RRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHCCCEEEcceEeC
Confidence 9999999999999999999985
No 87
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.83 E-value=8.9e-21 Score=158.91 Aligned_cols=75 Identities=53% Similarity=0.923 Sum_probs=70.7
Q ss_pred CCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCceEEEEcCCCCcEEEEecChhHHHHHHHHHHhhcCeEEEEeC
Q 004615 449 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGA 523 (742)
Q Consensus 449 ~~~Pvv~~~Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~ 523 (742)
||+|+++++|+|.+++|.++|.+||++|++|||+|++.+|++|||++|+||||+||||+++||+++||+++++++
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999874
No 88
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.83 E-value=7.8e-21 Score=161.20 Aligned_cols=78 Identities=44% Similarity=0.739 Sum_probs=75.3
Q ss_pred eceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004615 648 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 726 (742)
Q Consensus 648 EPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~ 726 (742)
||||+++|.||++|+|+|+++|++|||+|.+++..+ +.+.|+|.+|++|++||.++||++|+|+|+|+++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE-DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC-CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999999765 679999999999999999999999999999999999999986
No 89
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.82 E-value=1.7e-20 Score=159.09 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=75.2
Q ss_pred eceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004615 648 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 726 (742)
Q Consensus 648 EPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~ 726 (742)
||||+++|.||++++|+|+++|++|||+|.+++..+ +...|+|.+|+++++||.++||++|+|+|+|+++|+||+++.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG-DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC-CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999999776 789999999999999999999999999999999999999974
No 90
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.82 E-value=3.4e-20 Score=157.57 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=74.7
Q ss_pred eceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccC
Q 004615 648 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVV 725 (742)
Q Consensus 648 EPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v 725 (742)
||||+++|.||++|+|+|+++|++|||+|.+++..+++...|+|.+|+++++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999865467999999999999999999999999999999999999985
No 91
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=5.2e-20 Score=185.36 Aligned_cols=269 Identities=18% Similarity=0.270 Sum_probs=193.8
Q ss_pred CCCCCCCCCCcCCCccccCCCCCCC-CCCCCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEE
Q 004615 38 LGLLPSPASHFLGSVCVFSPRSTSK-LSPRSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 116 (742)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~ 116 (742)
.|++.+++.+...... .|..+. .+++.+.||+.+||+.|||+|....+.. -.+=..+.|-||.|||+..+....
T Consensus 10 ~~l~~qdl~~ldv~~l---~pls~evisRQATiNIGTIGHVAHGKSTvVkAiSG--v~TvrFK~ELERNITIKLGYANAK 84 (466)
T KOG0466|consen 10 KGLAEQDLTKLDVTKL---HPLSPEVISRQATINIGTIGHVAHGKSTVVKAISG--VHTVRFKNELERNITIKLGYANAK 84 (466)
T ss_pred cCcchhhccccChhhc---CCCCHHHhhheeeeeecceeccccCcceeeeeecc--ceEEEehhhhhcceeEEeccccce
Confidence 3566666666554443 333322 2678899999999999999998877765 223346788999999999988766
Q ss_pred e-c------------------------------------CeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCC-Cc
Q 004615 117 W-N------------------------------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VE 158 (742)
Q Consensus 117 ~-~------------------------------------~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~G-v~ 158 (742)
. + -+++.|+|||||.-+...|..+..+.|+|+|+|.+.|. +|
T Consensus 85 IYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQ 164 (466)
T KOG0466|consen 85 IYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQ 164 (466)
T ss_pred EEecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCC
Confidence 5 0 15788999999999999999999999999999999886 79
Q ss_pred ccHHHHHHHHHHcCCCeE-EEEecccCCCCChHHHHHHHHHHhCCcceEEEeccCCCCcceeeeecccceEEEecCCCCC
Q 004615 159 PQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELG 237 (742)
Q Consensus 159 ~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g 237 (742)
+||-+++....-.+++.| ++-||+|+...+. .
T Consensus 165 PQTsEHLaaveiM~LkhiiilQNKiDli~e~~--A--------------------------------------------- 197 (466)
T KOG0466|consen 165 PQTSEHLAAVEIMKLKHIIILQNKIDLIKESQ--A--------------------------------------------- 197 (466)
T ss_pred CchhhHHHHHHHhhhceEEEEechhhhhhHHH--H---------------------------------------------
Confidence 999999998888888875 6669999865321 0
Q ss_pred ceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHH
Q 004615 238 AKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLL 317 (742)
Q Consensus 238 ~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LL 317 (742)
+|+| +++.+.++.... .-.|+++.||.-+.+++.+.
T Consensus 198 ----------------------------------~eq~--------e~I~kFi~~t~a--e~aPiiPisAQlkyNId~v~ 233 (466)
T KOG0466|consen 198 ----------------------------------LEQH--------EQIQKFIQGTVA--EGAPIIPISAQLKYNIDVVC 233 (466)
T ss_pred ----------------------------------HHHH--------HHHHHHHhcccc--CCCceeeehhhhccChHHHH
Confidence 0111 112222221111 12488999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEEEEe--------cCCCceEEEEEEEeeEecCCCEEEe
Q 004615 318 DAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLN 389 (742)
Q Consensus 318 d~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--------~~~~G~l~~~RV~sG~L~~gd~v~~ 389 (742)
++|++++|-|.. |...|..+.|.+.|. +.-.|-++-+-+..|.|+.||.+-+
T Consensus 234 eyivkkIPvPvR--------------------df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEi 293 (466)
T KOG0466|consen 234 EYIVKKIPVPVR--------------------DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEI 293 (466)
T ss_pred HHHHhcCCCCcc--------------------ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEe
Confidence 999999999976 235666777777764 2335778999999999999999975
Q ss_pred CC-------CCce-E--ecceEEEeecCceeecccccCCCEEEE
Q 004615 390 AN-------KGKK-E--RIGRLLEMHANSREDVKVALAGDIIAL 423 (742)
Q Consensus 390 ~~-------~~~~-~--kV~~l~~~~g~~~~~v~~a~aGdIv~I 423 (742)
-+ +|+. . -..+|..+.+ +..+.+.|.+|-.+++
T Consensus 294 RPGiv~kd~~g~~~C~Pi~SrI~sL~A-E~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 294 RPGIVTKDENGNIKCRPIFSRIVSLFA-EQNDLQFAVPGGLIGV 336 (466)
T ss_pred cCceeeecCCCcEEEeeHHHHHHHHHh-hhccceeecCCceeee
Confidence 32 1111 1 1333333343 3356888999988877
No 92
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.81 E-value=2.8e-20 Score=157.87 Aligned_cols=78 Identities=58% Similarity=0.941 Sum_probs=75.3
Q ss_pred eceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004615 648 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 726 (742)
Q Consensus 648 EPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~ 726 (742)
||||+++|+||++++|+|+++|++|||+|.+++..+ +...|+|.+|++|++||.++||++|+|+|+++++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG-GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC-CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999999765 678999999999999999999999999999999999999986
No 93
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.81 E-value=3.1e-20 Score=158.44 Aligned_cols=79 Identities=37% Similarity=0.587 Sum_probs=74.7
Q ss_pred eceeEEEEEeCCcchHHHHHHHhcCCceecccccCCC-CeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004615 648 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 726 (742)
Q Consensus 648 EPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~-~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~ 726 (742)
||||+++|.+|++++|+|+++|++|||.|.+++..++ +...|+|.+|++|++||.++||++|+|+|+|+++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 8999999999999999999999999999999987643 348999999999999999999999999999999999999986
No 94
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.81 E-value=1.7e-19 Score=177.58 Aligned_cols=86 Identities=22% Similarity=0.254 Sum_probs=78.8
Q ss_pred CceEEecccCCCC----CcccHHHHHHHHHHHHHcCcccCCCeeeEEEEEEeccccCC--CCCHHHHHHHHHHHHHHHHH
Q 004615 567 GYEFKSEIKGGAV----PKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDV--DSSVLAFQLAARGAFREGMR 640 (742)
Q Consensus 567 ~~~f~~~~~~~~i----~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~~--ds~~~~f~~a~~~a~~~a~~ 640 (742)
.++|.|.+.+... +++|+++|++||++|+++||||||||+||+|+|.++.+|+. ++.+++|..|+++||++|++
T Consensus 86 pNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~~~a~~ 165 (177)
T cd01681 86 PNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRACYAAFL 165 (177)
T ss_pred ceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHHHHHHh
Confidence 4677777766555 78999999999999999999999999999999999999986 78889999999999999999
Q ss_pred hcCCeeeeceeE
Q 004615 641 KAGPKMLEPIMK 652 (742)
Q Consensus 641 ~a~~~LlEPi~~ 652 (742)
+|+|+||||||.
T Consensus 166 ~a~p~LlEPi~~ 177 (177)
T cd01681 166 LASPRLMEPMYL 177 (177)
T ss_pred hCCCEEEccccC
Confidence 999999999984
No 95
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=9.1e-19 Score=173.54 Aligned_cols=132 Identities=38% Similarity=0.561 Sum_probs=115.7
Q ss_pred EEEEEeecccCcccccceeccCC-----------ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGT-----------ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVE 138 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~-----------~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~ 138 (742)
||+++|.+++||||.++.+.... ..+|....|+++|+|+......+.+.+..++|+||||+.+|.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 68999999999999877764321 3577788999999999999999999999999999999999999999
Q ss_pred HHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC-CChHHHHHHHHHHhC
Q 004615 139 RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLG 201 (742)
Q Consensus 139 ~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~-~~~~~~~~~i~~~l~ 201 (742)
.+++.+|++++|+|+.++...+.+..+..+...++|+++++||+|+.. .++....+++++.++
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLG 144 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHc
Confidence 999999999999999999999999999999989999999999999986 555666666666553
No 96
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.80 E-value=1.1e-19 Score=154.73 Aligned_cols=78 Identities=27% Similarity=0.465 Sum_probs=74.1
Q ss_pred eceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhh-hchHHHhhccCCceEEEEEEeCccccC
Q 004615 648 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 725 (742)
Q Consensus 648 EPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~-~gy~~~Lrs~T~G~a~~~~~f~~y~~v 725 (742)
|||++++|.||++|+|+|+++|++|||+|.+++..+++...|+|.+|++++ +||.++||++|+|+|+|+++|+||+|.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 899999999999999999999999999999999765357999999999999 699999999999999999999999985
No 97
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.79 E-value=2e-19 Score=153.07 Aligned_cols=79 Identities=51% Similarity=0.868 Sum_probs=75.5
Q ss_pred eceeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEEEEeCccccCC
Q 004615 648 EPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVP 726 (742)
Q Consensus 648 EPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~v~ 726 (742)
||||.++|.+|++++|+|+++|++|||+|.+++..+.+...|+|.+|++|++||.++||++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 8999999999999999999999999999999987653579999999999999999999999999999999999999985
No 98
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=9.8e-19 Score=193.21 Aligned_cols=277 Identities=24% Similarity=0.290 Sum_probs=181.9
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC------------------eEEEEEcCC
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK------------------HRINIIDTP 128 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~------------------~~inlIDTP 128 (742)
+-+.+||+||+++|||.++..+..- +-.+.-.-|||.+..++.|...+ --+.+||||
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~t-----NVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtp 548 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGT-----NVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTP 548 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcc-----ccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCC
Confidence 3478999999999999987665441 11222346899998888887631 247899999
Q ss_pred CccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEE
Q 004615 129 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 208 (742)
Q Consensus 129 Gh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~ 208 (742)
||.-|+.-..|+...||.||+|||...|+++||.+-+++++..+.|.|+.+||+||+-
T Consensus 549 ghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY---------------------- 606 (1064)
T KOG1144|consen 549 GHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY---------------------- 606 (1064)
T ss_pred CchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc----------------------
Confidence 9999999999999999999999999999999999999999999999999999999972
Q ss_pred eccCCCCcceeeeecccceEEEecCCCCCceeEe-ecCchhHHHH----HHHHHHHHHHHHHccCHHHH--HHHhcCCCC
Q 004615 209 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY-EDIPANLQKM----AQEYRSQMIETIVELDDEAM--ESYLEGNEP 281 (742)
Q Consensus 209 ~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~-~~i~~~~~~~----~~~~r~~l~e~~~e~dd~ll--e~yl~~~~~ 281 (742)
||.... .+|-+.+..+ ..++...+-..+.++.+.=| +.|+++
T Consensus 607 ----------------------------gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykN--- 655 (1064)
T KOG1144|consen 607 ----------------------------GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKN--- 655 (1064)
T ss_pred ----------------------------ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeec---
Confidence 111100 0111111111 11222222222222211111 111121
Q ss_pred CHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCCCCeEEEEEE
Q 004615 282 DEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 361 (742)
Q Consensus 282 ~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 361 (742)
.-.+.++-+++.||..|.||..||-.|+++...-.. . ....-..+.+.|..
T Consensus 656 ------------k~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~-~----------------kl~y~~ev~cTVlE 706 (1064)
T KOG1144|consen 656 ------------KEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV-E----------------KLAYVDEVQCTVLE 706 (1064)
T ss_pred ------------ccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH-H----------------HHhhhhheeeEEEE
Confidence 123567788999999999999999999886532211 0 00123445667777
Q ss_pred EEecCCCceEEEEEEEeeEecCCCEEEeCCCC----------------ceEecceEEEeecCceeecccccCCCEEEEcC
Q 004615 362 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG----------------KKERIGRLLEMHANSREDVKVALAGDIIALAG 425 (742)
Q Consensus 362 ~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~----------------~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~g 425 (742)
+-..++.|.-.=+-+..|.|+.||.|.+...+ +.-||++-|+.| .+|..| .|=-++-.|
T Consensus 707 VKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hh----kEvkaA-~GiKI~A~~ 781 (1064)
T KOG1144|consen 707 VKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHH----KEVKAA-QGIKIAAKD 781 (1064)
T ss_pred EEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeeh----hHhhhh-ccchhhhcc
Confidence 77788889877777889999999999875433 224566666554 334332 233333345
Q ss_pred CCccccCcee
Q 004615 426 LKDTITGETL 435 (742)
Q Consensus 426 l~~~~tGdTL 435 (742)
|+.+..|.-|
T Consensus 782 LEkaiaG~~l 791 (1064)
T KOG1144|consen 782 LEKAIAGTRL 791 (1064)
T ss_pred hHHHhcCCee
Confidence 6656555433
No 99
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.77 E-value=3.8e-18 Score=165.05 Aligned_cols=115 Identities=20% Similarity=0.285 Sum_probs=101.3
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec-CeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~-~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
+|+++|++++|||+++..+...+ .+..+.|..+|+|+......+.+. ++.++++|||||.+|...+..+++.+|+++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE--TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc--cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 79999999999999988875422 355677888999999998888887 899999999999999999999999999999
Q ss_pred EEEeCCCCCcccHHHHHHHHHHcCC-CeEEEEecccCCC
Q 004615 149 CLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLG 186 (742)
Q Consensus 149 lVVDa~~Gv~~qT~~v~~~a~~~~i-p~il~INK~Dr~~ 186 (742)
+|+|+.++...|+...+..+...+. |+++++||+|+..
T Consensus 80 ~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 80 LVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred EEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 9999999999999988887777777 8899999999865
No 100
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.76 E-value=2.9e-18 Score=147.73 Aligned_cols=84 Identities=31% Similarity=0.414 Sum_probs=80.3
Q ss_pred CCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccC
Q 004615 353 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITG 432 (742)
Q Consensus 353 ~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tG 432 (742)
+||+++|||+.+|++.|+++|+|||||+|++||.|++.. ++.+++++|+.++|.++.++++|.||||+++.|++++.+|
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~G 80 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRVG 80 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcCc
Confidence 689999999999999999999999999999999999877 6678999999999999999999999999999999999999
Q ss_pred ceeec
Q 004615 433 ETLCD 437 (742)
Q Consensus 433 dTL~~ 437 (742)
|||++
T Consensus 81 dtl~~ 85 (85)
T cd03690 81 DVLGD 85 (85)
T ss_pred cccCC
Confidence 99963
No 101
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.74 E-value=1e-17 Score=143.94 Aligned_cols=83 Identities=51% Similarity=0.773 Sum_probs=79.6
Q ss_pred eEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCce
Q 004615 355 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 434 (742)
Q Consensus 355 ~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdT 434 (742)
|+++|||+.++++.|+++|+|||+|+|++||.|++...++.++|++|+.++|.++.++++|.||||+++.|++++++|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 57899999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred eec
Q 004615 435 LCD 437 (742)
Q Consensus 435 L~~ 437 (742)
||.
T Consensus 81 l~~ 83 (83)
T cd04092 81 LVT 83 (83)
T ss_pred EeC
Confidence 974
No 102
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.73 E-value=1.2e-17 Score=197.40 Aligned_cols=239 Identities=17% Similarity=0.155 Sum_probs=177.6
Q ss_pred ccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHH--------HHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL--------EVE 138 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~--------ev~ 138 (742)
..+|+++||+|+||||+...+...+ .+.++ .|.|+......+.|+++.++++||||+.+|.. |..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~------pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i 76 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW------AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI 76 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC------CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHH
Confidence 3589999999999999988885433 23333 78999988889999999999999999998853 221
Q ss_pred H--HH--HhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC-CChHHHHHHHHHHhCCcceEEEeccCC
Q 004615 139 R--AL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQLPVGA 213 (742)
Q Consensus 139 ~--al--~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~-~~~~~~~~~i~~~l~~~~~~~~~Pi~~ 213 (742)
. .+ ..+|++|+|+|++... +...++.++.+.++|+++++||+|+.. .+....++++.+++|...+++..+.++
T Consensus 77 ~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~ 154 (772)
T PRK09554 77 ACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGR 154 (772)
T ss_pred HHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCC
Confidence 1 22 2689999999999853 345578899999999999999999863 455667788999999988888888776
Q ss_pred C-CcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHcc-CHHHHHHHhcCCCCCHH------H
Q 004615 214 E-DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL-DDEAMESYLEGNEPDEE------T 285 (742)
Q Consensus 214 ~-~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~-dd~lle~yl~~~~~~~~------~ 285 (742)
+ +++.+.++.... . + .....++|+++.+..++.++.+.|.+++. ++.++.+|||++..+.+ +
T Consensus 155 GIdeL~~~I~~~~~------~---~-~~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEgD~~~~~~~~~~~~ 224 (772)
T PRK09554 155 GIEALKLAIDRHQA------N---E-NVELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEGDIYSRAYAGEASQ 224 (772)
T ss_pred CHHHHHHHHHHhhh------c---c-CCcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcCchHHHhhhhhHHH
Confidence 6 444333322110 0 0 11124567777777788888888877766 88999999998755443 3
Q ss_pred HHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhC
Q 004615 286 IKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 324 (742)
Q Consensus 286 l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~l 324 (742)
+.+.+++........|.+++++.+..+++.+++.+++..
T Consensus 225 ~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 225 HLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445555554444457888999999999999999998754
No 103
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2e-16 Score=163.50 Aligned_cols=279 Identities=19% Similarity=0.251 Sum_probs=202.3
Q ss_pred cEEEEEeecccCcccccceecc-----CC----ccCCCcHhHHhhcceEecceEEEEe---------------------c
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHE-----GT----ATMDWMEQEQERGITITSAATTTYW---------------------N 118 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~-----g~----~~~D~~~~E~erGITi~s~~~~~~~---------------------~ 118 (742)
-+++++|..++||+|++|-+.. |+ --+=.++.|.+-|-|-..+.-.+-+ .
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 6799999999999998886644 33 1122357788888765444333333 2
Q ss_pred CeEEEEEcCCCccCcHHHHHHHHHh--hceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC-ChHHHHHH
Q 004615 119 KHRINIIDTPGHVDFTLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDM 195 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~ev~~al~~--~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~-~~~~~~~~ 195 (742)
.+.++|||-.||..|...++.+|.. -|.|++||.|..|+..-|++++..+...++|.+++|+|||.... -+++++.+
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~~ 327 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVKD 327 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHHH
Confidence 4789999999999999999999975 59999999999999999999999999999999999999998753 37888888
Q ss_pred HHHHh---CCcceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccCHHHH
Q 004615 196 IVTNL---GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAM 272 (742)
Q Consensus 196 i~~~l---~~~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~dd~ll 272 (742)
+...+ |...+|.-+-
T Consensus 328 l~nll~~~Gc~kvp~~Vt-------------------------------------------------------------- 345 (591)
T KOG1143|consen 328 LSNLLAKAGCTKVPKRVT-------------------------------------------------------------- 345 (591)
T ss_pred HHHHHhhcCccccceEee--------------------------------------------------------------
Confidence 88766 3322222110
Q ss_pred HHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccccCCC
Q 004615 273 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDD 352 (742)
Q Consensus 273 e~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (742)
+.++..++... .+...++|||+.|...|.|++ ||..+.+.||+-..+.. ...+ -.
T Consensus 346 ---------~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~e-----------~~~L---~q 400 (591)
T KOG1143|consen 346 ---------TKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAEE-----------RIQL---VQ 400 (591)
T ss_pred ---------chHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChHH-----------HHHH---hc
Confidence 11222222222 456789999999999999998 67777788865433111 0000 14
Q ss_pred CCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCC--Cc--eEecceEEEeecCceeecccccCCCEEEEc-CCC
Q 004615 353 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GK--KERIGRLLEMHANSREDVKVALAGDIIALA-GLK 427 (742)
Q Consensus 353 ~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~--~~--~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~-gl~ 427 (742)
.|.-..|-.++..|.+|.++-|-+-+|.++.|+.+.+.+. |. +.+|..|. +++.++..+.||+-..+. +..
T Consensus 401 ~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqaAslsl~d~ 476 (591)
T KOG1143|consen 401 LPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQAASLSLNDP 476 (591)
T ss_pred CcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCccceeeeccCC
Confidence 5666788999999999999999999999999999997653 33 34566665 455778889999988773 211
Q ss_pred c---cccCceeecC
Q 004615 428 D---TITGETLCDA 438 (742)
Q Consensus 428 ~---~~tGdTL~~~ 438 (742)
+ ++.|.++...
T Consensus 477 D~~~LR~GMVl~~~ 490 (591)
T KOG1143|consen 477 DGVSLRRGMVLAEI 490 (591)
T ss_pred CccchhcceEEeec
Confidence 1 4566666543
No 104
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.71 E-value=3.7e-17 Score=140.66 Aligned_cols=81 Identities=33% Similarity=0.514 Sum_probs=78.0
Q ss_pred EEEEEEEe---cCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCc
Q 004615 357 GLAFKIMS---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 433 (742)
Q Consensus 357 ~~V~k~~~---~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGd 433 (742)
++|||+.+ +|+.|+++|+|||||+|++||.|++...++.++|++|+.++|.+..+++++.||||+++.|++++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 58999999 999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred eeec
Q 004615 434 TLCD 437 (742)
Q Consensus 434 TL~~ 437 (742)
|||+
T Consensus 81 tl~~ 84 (85)
T cd03689 81 TLTE 84 (85)
T ss_pred EeeC
Confidence 9985
No 105
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.71 E-value=1.4e-16 Score=154.99 Aligned_cols=115 Identities=28% Similarity=0.331 Sum_probs=98.4
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec---CeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~---~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
+.|+++|+.++|||+.+..+..+... ....+++|.......+.++ ++.++|+|||||.+|...+..+++.+|
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d 75 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-----AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTD 75 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc-----cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcC
Confidence 46999999999999999887654322 1244678888777777775 789999999999999888888999999
Q ss_pred eEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCC
Q 004615 146 GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 188 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~ 188 (742)
++++|+|+.++...|+...++.+...++|+++++||+|+...+
T Consensus 76 ~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 76 IAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN 118 (168)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc
Confidence 9999999999999999999999999999999999999987544
No 106
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.71 E-value=5.3e-17 Score=139.57 Aligned_cols=83 Identities=65% Similarity=1.034 Sum_probs=79.6
Q ss_pred eEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCce
Q 004615 355 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 434 (742)
Q Consensus 355 ~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdT 434 (742)
++++|||+.++++.|+++|+|||+|+|++||.|++..+++.+++++|+.++|.++.+++++.||||+++.|++++.+|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 47899999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred eec
Q 004615 435 LCD 437 (742)
Q Consensus 435 L~~ 437 (742)
|++
T Consensus 81 l~~ 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred eeC
Confidence 974
No 107
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=1.3e-16 Score=172.17 Aligned_cols=111 Identities=21% Similarity=0.250 Sum_probs=99.7
Q ss_pred cEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH---------HHH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT---------LEV 137 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~---------~ev 137 (742)
+.|+|+|.+|-||||+.+++.... -+.|+ -|+|.+..+...+|.++.|.+|||+|..+.. .++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~------pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa 77 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT------PGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQA 77 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC------CCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHH
Confidence 689999999999999998876543 55565 7999999999999999999999999987532 456
Q ss_pred HHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 138 ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 138 ~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
..|+..||.+|+|||+.+|+.++++.+.+.+++.+.|+|+++||+|..
T Consensus 78 ~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 78 LIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 889999999999999999999999999999998889999999999976
No 108
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.70 E-value=2.1e-16 Score=163.24 Aligned_cols=277 Identities=19% Similarity=0.255 Sum_probs=205.6
Q ss_pred cEEEEEeecccCcccccceeccCC---------ccCCCcHhHHhhcceEecceE-------------------EEEe---
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGT---------ATMDWMEQEQERGITITSAAT-------------------TTYW--- 117 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~---------~~~D~~~~E~erGITi~s~~~-------------------~~~~--- 117 (742)
.+|+++|++++||+|++|-+.+|. +-+=.++.|.|.|-|-....- ++.|
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 579999999999999999887753 223335677777776543322 3333
Q ss_pred ---cCeEEEEEcCCCccCcHHHHHHHHH--hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCC-hHH
Q 004615 118 ---NKHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-FFR 191 (742)
Q Consensus 118 ---~~~~inlIDTPGh~DF~~ev~~al~--~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~-~~~ 191 (742)
.-+.|+|||..||..|...+.-++. .-|.+.|.|-|..|+-..|++++.+|....+|+.+|++|+|...++ +++
T Consensus 214 ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLqE 293 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQE 293 (641)
T ss_pred ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHHH
Confidence 1368999999999999888888775 5799999999999999999999999999999999999999999888 566
Q ss_pred HHHHHHHHhCC---cceEEEeccCCCCcceeeeecccceEEEecCCCCCceeEeecCchhHHHHHHHHHHHHHHHHHccC
Q 004615 192 TRDMIVTNLGA---KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 268 (742)
Q Consensus 192 ~~~~i~~~l~~---~~~~~~~Pi~~~~~f~g~idl~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~~~e~d 268 (742)
++.-+...+.. ..+|+-+- .-+ |++ ..+..|
T Consensus 294 tmKll~rllkS~gcrK~PvlVr--s~D------DVv-~~A~NF------------------------------------- 327 (641)
T KOG0463|consen 294 TMKLLTRLLKSPGCRKLPVLVR--SMD------DVV-HAAVNF------------------------------------- 327 (641)
T ss_pred HHHHHHHHhcCCCcccCcEEEe--ccc------ceE-EeeccC-------------------------------------
Confidence 77766666632 22222111 000 000 000001
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccc
Q 004615 269 DEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERA 348 (742)
Q Consensus 269 d~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~ 348 (742)
-..+..|+|.+|..+|.+++ ||.+..+.+|.-...
T Consensus 328 --------------------------~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R~~~------------------ 362 (641)
T KOG0463|consen 328 --------------------------PSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLRRQL------------------ 362 (641)
T ss_pred --------------------------ccccccceEEeccccCCChH-HHHHHHhhcCccccc------------------
Confidence 11356899999999999987 899999988754331
Q ss_pred cCCCCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCc----eEecceEEEeecCceeecccccCCCEEEE-
Q 004615 349 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK----KERIGRLLEMHANSREDVKVALAGDIIAL- 423 (742)
Q Consensus 349 ~~~~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~----~~kV~~l~~~~g~~~~~v~~a~aGdIv~I- 423 (742)
+.+.|.-.++..+|..|++|+++.+...+|+++.+|.+...++.. ...|++|. +++-+|..+.+|+-..+
T Consensus 363 -~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~VrcGQtASFA 437 (641)
T KOG0463|consen 363 -NENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRCGQTASFA 437 (641)
T ss_pred -ccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEeccchhhhH
Confidence 236788889999999999999999999999999999999765432 24456553 56788999999998765
Q ss_pred -cCCC--ccccCceeecCCCc
Q 004615 424 -AGLK--DTITGETLCDADHP 441 (742)
Q Consensus 424 -~gl~--~~~tGdTL~~~~~~ 441 (742)
.+++ ++++|.++.+++..
T Consensus 438 LKKIkr~~vRKGMVmVsp~lk 458 (641)
T KOG0463|consen 438 LKKIKRKDVRKGMVMVSPKLK 458 (641)
T ss_pred hhhcchhhhhcceEEecCCCC
Confidence 3443 48899999887643
No 109
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.70 E-value=9.8e-17 Score=137.11 Aligned_cols=81 Identities=46% Similarity=0.792 Sum_probs=77.3
Q ss_pred eEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCccccCce
Q 004615 355 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 434 (742)
Q Consensus 355 ~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~tGdT 434 (742)
|+++|||+.+|++ |+++|+|||+|+|++||.|++...+++++|.+|+.++|.++.+++++.||||+++.|++ +.+|||
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~~Gdt 78 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CASGDT 78 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cccCCE
Confidence 5799999999988 99999999999999999999999888999999999999999999999999999999998 999999
Q ss_pred eec
Q 004615 435 LCD 437 (742)
Q Consensus 435 L~~ 437 (742)
|++
T Consensus 79 l~~ 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred ecC
Confidence 973
No 110
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=9.6e-16 Score=165.50 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=99.4
Q ss_pred CccEEEEEeecccCcccccceeccCCcc-CCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc----------Cc-H
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTAT-MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----------DF-T 134 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~-~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~----------DF-~ 134 (742)
+...|||+|+||.|||++++.+-.-..+ .+. .-|+|+++-.+.++|++..+.||||.|-. .| .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-----~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv 251 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-----IAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSV 251 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-----CCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEee
Confidence 5789999999999999988877543322 222 26999999999999999999999999953 23 2
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
.....|+..+|.+++|+||.+|+..|..++..++.+.|.+.++++||||....
T Consensus 252 ~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 252 ARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred hhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 45678888999999999999999999999999999999999999999998653
No 111
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=1.3e-15 Score=171.83 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=96.7
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH-----------H
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT-----------L 135 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~-----------~ 135 (742)
...+|+++|++++|||+++..+-..+. ......+|+|.++....+.+++..++|+||||+.+.. .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~----~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~ 247 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEER----VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVI 247 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc----eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHH
Confidence 468999999999999999887654331 1112247999999989999999999999999975421 2
Q ss_pred HHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 136 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 136 ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
...++++.+|++|+|+|+.+|...|+..+++++.+.+.|+++++||+|+.
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 34568899999999999999999999999999999999999999999986
No 112
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.64 E-value=1e-15 Score=132.46 Aligned_cols=83 Identities=33% Similarity=0.596 Sum_probs=76.8
Q ss_pred eEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCC---ceEecceEEEeecCceeecccccCCCEEEEcCCCcccc
Q 004615 355 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 431 (742)
Q Consensus 355 ~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~---~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~~t 431 (742)
|.|+|||+.++++.|+++|+|||+|+|++||+|++...+ ..++|++|+.++|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 468999999999999999999999999999999987653 35789999999999999999999999999999999999
Q ss_pred Cceeec
Q 004615 432 GETLCD 437 (742)
Q Consensus 432 GdTL~~ 437 (742)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
No 113
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.63 E-value=1.2e-15 Score=131.81 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=74.4
Q ss_pred eEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEc-C---CCccc
Q 004615 355 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTI 430 (742)
Q Consensus 355 ~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~-g---l~~~~ 430 (742)
|.++|||+.++++.|+++|+|||+|+|++||.|++...++++++++|+.+ +.+..+++++.||||+++. | ++++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEE-CCCccCCceECCCCEEEEEccccccCccc
Confidence 57999999999999999999999999999999999888888999999955 7778999999999999995 3 67789
Q ss_pred cCceeec
Q 004615 431 TGETLCD 437 (742)
Q Consensus 431 tGdTL~~ 437 (742)
+|||||+
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
No 114
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.63 E-value=2.6e-15 Score=169.08 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=96.4
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH-----------H
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT-----------L 135 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~-----------~ 135 (742)
...+|+++|++++|||+++..+-..+.. ......|+|.++....+.+++..+.|+||||+.++. .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~----~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERV----IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCee----ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHH
Confidence 4578999999999999998877543311 112237899999888999999999999999986543 2
Q ss_pred HHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 136 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 136 ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
...++++.+|++|+|+|+.+|+..|+..+++++.+.++|+|+++||+|+.
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 23567899999999999999999999999999999999999999999986
No 115
>COG1159 Era GTPase [General function prediction only]
Probab=99.62 E-value=4.4e-15 Score=152.37 Aligned_cols=117 Identities=19% Similarity=0.231 Sum_probs=90.2
Q ss_pred CccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC--------cHHHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--------FTLEV 137 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D--------F~~ev 137 (742)
+.--|||+|.+|+||||+++.+-.-+ ..+-..+ ..|...-..-+..++++|.|+||||... ...++
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~-----QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKP-----QTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCc-----chhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 34579999999999999998876533 2222222 1232222333345789999999999543 35678
Q ss_pred HHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCC
Q 004615 138 ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 188 (742)
Q Consensus 138 ~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~ 188 (742)
..++..+|.+++|||+.+++....+.++++.++.+.|+|+++||+|+...+
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~ 130 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK 130 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH
Confidence 889999999999999999999999999999999889999999999987643
No 116
>PRK15494 era GTPase Era; Provisional
Probab=99.62 E-value=6.6e-15 Score=159.92 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=89.5
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc--------HHHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--------TLEV 137 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF--------~~ev 137 (742)
++..+|+++|++++||||++.++-.++ +....+ ..+.|.......+.+++++++|+||||..++ ....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k-~~ivs~---k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEK-LSIVTP---KVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCc-eeeccC---CCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHH
Confidence 345699999999999999988775432 222111 2345655555567788999999999998543 2233
Q ss_pred HHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 138 ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 138 ~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
..+++.+|++|+|+|+.++....++.++..+...+.|+|+++||+|+..
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 4568899999999999998888888888888888999999999999754
No 117
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=8.4e-15 Score=140.36 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=92.5
Q ss_pred EEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHH--------HHHHHHHh
Q 004615 72 SVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL--------EVERALRV 143 (742)
Q Consensus 72 ~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~--------ev~~al~~ 143 (742)
+++|++++|||+++..+..++.. ..+...++|.......+.++++.++++|||||.++.. +....++.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA----IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE----eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHh
Confidence 57999999999998877654310 1122357788888888889999999999999999654 56678899
Q ss_pred hceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 144 LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 144 ~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
+|++++|+|+..+...++..+++++++.++|+++++||+|+...
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 99999999999998888888889999999999999999998653
No 118
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=1.2e-14 Score=141.30 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=92.9
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH-----------HH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT-----------LE 136 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~-----------~e 136 (742)
..+|+++|++++|||+.+..+.... ....+..++.|.......+.+++..+++|||||+.++. ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~ 77 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEE----RVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLR 77 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc----ceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHH
Confidence 4689999999999999888775432 11112246778777777788889999999999986541 23
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
...+++.+|++++|+|+..+...+...+++++...+.|+++++||+|+...
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 455678899999999999998888888999999899999999999998754
No 119
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.60 E-value=2.7e-15 Score=143.26 Aligned_cols=109 Identities=18% Similarity=0.295 Sum_probs=85.9
Q ss_pred EEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH----HH-H-HHHH-
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT----LE-V-ERAL- 141 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~----~e-v-~~al- 141 (742)
+|+++|.+|+|||+++..+...+ .+.++ .|.|+......+.+++..+.|+||||..++. .| + ...+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~------pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~ 75 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNW------PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL 75 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEES------TTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCC------CCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh
Confidence 69999999999999998886655 55566 7999999999999999999999999965542 12 2 2233
Q ss_pred -HhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 142 -RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 142 -~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
...|++|+|+||.. -.+...+..|+.+.++|+++++||||...
T Consensus 76 ~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 76 SEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp HTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred hcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 36899999999986 45677888999999999999999999653
No 120
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.59 E-value=1.2e-14 Score=153.39 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=81.5
Q ss_pred EEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc--------HHHHHH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--------TLEVER 139 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF--------~~ev~~ 139 (742)
.|+++|++++||||++..+...+ .+.+. .+.|..........++.++.|+||||+.+. ...+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~------~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPK------AQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCC------CCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHH
Confidence 58999999999999988876543 12222 234443322333346788999999998653 234567
Q ss_pred HHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 140 al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
+++.+|++++|+|+..+...+ +.++.++...+.|.++++||+|+.
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred HHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 889999999999999876554 677788888899999999999985
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.58 E-value=8.7e-15 Score=142.38 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=83.4
Q ss_pred EEEEEeecccCcccccceeccCCccC-CCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATM-DWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~-D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
||+++|+.++|||+++..+....... .... .+...|+......+.+++..++|+|||||.+|.......++.+|++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v 78 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPP--SKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAII 78 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcc--cccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 68999999999999887764311100 0111 12344666666778889999999999999999999999999999999
Q ss_pred EEEeCCCCCc-ccHHHHHHHHH----HcCCCeEEEEecccCCC
Q 004615 149 CLFDSVAGVE-PQSETVWRQAD----KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 149 lVVDa~~Gv~-~qT~~v~~~a~----~~~ip~il~INK~Dr~~ 186 (742)
+|+|+.+.-. .+....++.+. ..++|+++++||+|+..
T Consensus 79 ~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 79 YVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred EEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 9999976421 12223333332 35899999999999865
No 122
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=1.8e-14 Score=163.76 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=95.1
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc---------CcHHHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV---------DFTLEV 137 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~---------DF~~ev 137 (742)
..++|+++|++++|||+++..+-.++.. ..+...|+|.++....+.+++..+.|+||||.. +|...+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~----~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS----VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc----cccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHH
Confidence 5689999999999999999887654321 112247899988888899999999999999962 222222
Q ss_pred --HHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 138 --ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 138 --~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
..+++.+|++|+|+|+.+++..|...++.++...++|+|+++||+|+..
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 3467899999999999999999999999999999999999999999865
No 123
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.56 E-value=1.2e-14 Score=127.64 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=74.9
Q ss_pred eEEEEEEEEecC-CCceEEEEEEEeeEecCCCEEEeCC---------CCceEecceEEEeecCceeecccccCCCEEEEc
Q 004615 355 FAGLAFKIMSDP-FVGSLTFVRVYAGTLSAGSYVLNAN---------KGKKERIGRLLEMHANSREDVKVALAGDIIALA 424 (742)
Q Consensus 355 ~~~~V~k~~~~~-~~G~l~~~RV~sG~L~~gd~v~~~~---------~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~ 424 (742)
++++|||+.+++ +.|+++|+|||||+|+.||.|++.. ..+.+++++||.++|.++.++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 8899999999999999999998765 344688999999999999999999999999999
Q ss_pred CCCccccCceee
Q 004615 425 GLKDTITGETLC 436 (742)
Q Consensus 425 gl~~~~tGdTL~ 436 (742)
|++++.+|||.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999998754
No 124
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=1.8e-14 Score=171.33 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=95.8
Q ss_pred CCccEEEEEeecccCcccccceeccCCc--cCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc---------CcH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTA--TMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV---------DFT 134 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~--~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~---------DF~ 134 (742)
...++|+++|++++|||+++.++...+. +.+ ..|+|.++....+.+++..++|+||||+. +|.
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~------~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~ 521 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVND------LAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYY 521 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCC------CCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHH
Confidence 3468999999999999999988765442 222 36899988888899999999999999964 222
Q ss_pred HH--HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 135 LE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 135 ~e--v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
.. ...+++.+|++|+|+|+.+|++.|+..+++.+...++|+|+|+||+|+..
T Consensus 522 ~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 522 SSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 22 24567889999999999999999999999999999999999999999864
No 125
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.56 E-value=2.3e-14 Score=161.49 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=96.0
Q ss_pred EEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC--------cHHHHHH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--------FTLEVER 139 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D--------F~~ev~~ 139 (742)
.|+++|++++|||+++.++..+. .+.|. .|+|.+.....+.|++..++|+||||+.+ +...+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~------~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 74 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDT------PGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEI 74 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCC------CCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHH
Confidence 38999999999999988876543 23333 68999999999999999999999999843 4456778
Q ss_pred HHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 140 al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
+++.+|++|+|+|+.+|+..+++.+++.+++.++|+++++||+|...
T Consensus 75 ~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 75 AIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred HHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 89999999999999999999999999999999999999999999764
No 126
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=4.5e-14 Score=160.41 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=96.5
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC--------cHHHHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--------FTLEVE 138 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D--------F~~ev~ 138 (742)
..++|+|+|++++|||+++.++..+... ..+...|+|.+.....+.|+++.++|+||||+.. |...+.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~----~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA----VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc----cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 4579999999999999999887654311 1112368998888888899999999999999863 445567
Q ss_pred HHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 139 RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 139 ~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
.+++.+|++|+|+|+..|.....+.+++.+++.++|+|+|+||+|+..
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 789999999999999999888888888999999999999999999754
No 127
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.54 E-value=3.6e-14 Score=124.79 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=70.7
Q ss_pred eEEEEEEEEecCCC-ceEEEEEEEeeEecCCCEEEeCCCC---------ceEecceEEEeecCceeecccccCCCEEEEc
Q 004615 355 FAGLAFKIMSDPFV-GSLTFVRVYAGTLSAGSYVLNANKG---------KKERIGRLLEMHANSREDVKVALAGDIIALA 424 (742)
Q Consensus 355 ~~~~V~k~~~~~~~-G~l~~~RV~sG~L~~gd~v~~~~~~---------~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~ 424 (742)
++++|||+.++|+. |+++|+|||||+|++||.|++...+ ..++|++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 47899999999997 6799999999999999999863221 3589999999999999999999999999999
Q ss_pred CCCccccCcee
Q 004615 425 GLKDTITGETL 435 (742)
Q Consensus 425 gl~~~~tGdTL 435 (742)
|+++..++.+.
T Consensus 81 gl~~~~~~~~t 91 (94)
T cd04090 81 GIDSSIVKTAT 91 (94)
T ss_pred CcchheeceEE
Confidence 99986665543
No 128
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.54 E-value=5.5e-14 Score=135.76 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=80.5
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|+.++|||+++..+..+... ++. -|+......+.+.+..++|+||||+.+|.......++.+|++|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~-------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 72 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTI-------PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIY 72 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcC-------CccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 4899999999999988887655432 221 13333344567788999999999999999888889999999999
Q ss_pred EEeCCCCCccc-HHHHHHH-HH---HcCCCeEEEEecccCCCC
Q 004615 150 LFDSVAGVEPQ-SETVWRQ-AD---KYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 150 VVDa~~Gv~~q-T~~v~~~-a~---~~~ip~il~INK~Dr~~~ 187 (742)
|+|+.+.-..+ ....|.. .. ..++|+++++||+|+..+
T Consensus 73 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 73 VVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 99998742221 1233332 22 247899999999998654
No 129
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.52 E-value=4.8e-14 Score=135.53 Aligned_cols=107 Identities=15% Similarity=0.176 Sum_probs=84.2
Q ss_pred EEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHH------HHHHHH--hh
Q 004615 73 VFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE------VERALR--VL 144 (742)
Q Consensus 73 iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~e------v~~al~--~~ 144 (742)
++|+.++|||+.+..+..+..... ...|+|+......+.|+++.++|+||||+.+|... ....++ .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG-----NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc-----CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCC
Confidence 579999999999888865432221 23689999988999999999999999999887642 233443 89
Q ss_pred ceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
|++|+|+|+... .+....+.++.+.++|+++++||+|+..
T Consensus 76 d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 76 DLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred cEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 999999999873 3445566777888999999999999864
No 130
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.52 E-value=1.2e-13 Score=133.45 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=80.7
Q ss_pred EEEEEeecccCcccccceeccCCccC-CCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATM-DWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~-D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
+|+++|..++|||+++.++..+.... .+. -|+......+.+++..++|+||||+.+|...+...++.+|++|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-------~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 73 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-------PTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGII 73 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-------CccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEE
Confidence 58999999999999988776643211 111 1233333456778999999999999999999999999999999
Q ss_pred EEEeCCCCCccc-HHHHHHHHH------HcCCCeEEEEecccCCCC
Q 004615 149 CLFDSVAGVEPQ-SETVWRQAD------KYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 149 lVVDa~~Gv~~q-T~~v~~~a~------~~~ip~il~INK~Dr~~~ 187 (742)
+|+|+.+....+ ....+..+. ..++|+++++||+|+..+
T Consensus 74 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 74 FVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 999998754221 122222221 257999999999998653
No 131
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.52 E-value=6.3e-14 Score=136.27 Aligned_cols=115 Identities=20% Similarity=0.221 Sum_probs=84.6
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
..++|+++|+.++|||+++.++..|.. ..+....++.......+.+++ ..++|+||||+.+|.......++.+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~ 76 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTF-----SERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSA 76 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC-----cccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccC
Confidence 358999999999999999887755431 111222333344455666666 5789999999999999899999999
Q ss_pred ceEEEEEeCCCCCcccHHHHH-HHHHH---cCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~-~~a~~---~~ip~il~INK~Dr~~ 186 (742)
|++++|+|+.+....+....| +.... .++|+|+++||+|+..
T Consensus 77 d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 77 NGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 999999999886554444344 33322 4789999999999754
No 132
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.51 E-value=1.5e-13 Score=163.31 Aligned_cols=116 Identities=18% Similarity=0.333 Sum_probs=98.6
Q ss_pred CCCccEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC--------cH
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--------FT 134 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D--------F~ 134 (742)
+...++|+|+|++++|||+++..+..+. .+.| .-|+|.+.......|+++.++|+||||+.. |.
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~------~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~ 345 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVED------TPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIA 345 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecC------CCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHH
Confidence 3556899999999999999988875433 2222 358999888888899999999999999753 55
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
..+..+++.+|++|+|+|+.+|+....+.+++.+++.++|+|+++||+|...
T Consensus 346 ~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 346 SQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 6677889999999999999999999999899999999999999999999753
No 133
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.50 E-value=1.6e-13 Score=132.22 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=83.5
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|+.++|||+.+.++..+. .. +.-.|+......+.+++..++++||||+..|.......++.+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 72 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VV-------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIF 72 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CC-------CCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEE
Confidence 48999999999999988876654 11 12234455556777889999999999999998888888999999999
Q ss_pred EEeCCCCC-cccHHHHHHH----HHHcCCCeEEEEecccCCCC
Q 004615 150 LFDSVAGV-EPQSETVWRQ----ADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 150 VVDa~~Gv-~~qT~~v~~~----a~~~~ip~il~INK~Dr~~~ 187 (742)
|+|+..+- ..+....++. +...+.|++++.||+|+...
T Consensus 73 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 73 VVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 99999752 1223333333 33458999999999998753
No 134
>PRK00089 era GTPase Era; Reviewed
Probab=99.50 E-value=3.5e-13 Score=143.95 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=83.1
Q ss_pred CccEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc--------HHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--------TLE 136 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF--------~~e 136 (742)
+...|+++|++++||||++..+-..+ .+.+. .+.|......-+..++.++.|+||||+.+. ...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~------~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~ 77 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPK------PQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKA 77 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCC------CCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHH
Confidence 34689999999999999887764332 11111 112222211222235689999999998664 345
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
+..++..+|++++|+|+..+.+.....+++.+...+.|.++++||+|+.
T Consensus 78 ~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 78 AWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred HHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 5678889999999999999888888888888888889999999999986
No 135
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.50 E-value=1.6e-14 Score=148.07 Aligned_cols=155 Identities=16% Similarity=0.257 Sum_probs=117.1
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhc-ceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERG-ITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erG-ITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
.+.|+++|++++||++++..+.... +........| +|+ +..++.+++++||||+. .++..+++.+|.
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~---~~~~~~~~~g~i~i------~~~~~~~i~~vDtPg~~---~~~l~~ak~aDv 106 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNY---TKQNISDIKGPITV------VTGKKRRLTFIECPNDI---NAMIDIAKVADL 106 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc---ccCccccccccEEE------EecCCceEEEEeCCchH---HHHHHHHHhcCE
Confidence 4789999999999999775443210 0000111234 222 22378899999999975 677888999999
Q ss_pred EEEEEeCCCCCcccHHHHHHHHHHcCCCeEE-EEecccCCC--CChHHHHHHHHHHhCCcce------------EEEecc
Q 004615 147 AICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLG--ANFFRTRDMIVTNLGAKPL------------VVQLPV 211 (742)
Q Consensus 147 ailVVDa~~Gv~~qT~~v~~~a~~~~ip~il-~INK~Dr~~--~~~~~~~~~i~~~l~~~~~------------~~~~Pi 211 (742)
+++|+|+.+|+..|+..+|..+...++|.++ ++||+|+.. .+++++.+++++.+..... ++++|.
T Consensus 107 VllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~ 186 (225)
T cd01882 107 VLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRYPK 186 (225)
T ss_pred EEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCCCH
Confidence 9999999999999999999999999999754 999999964 3356667777775542211 456788
Q ss_pred CCCCcceeeeecccceEEEecCC
Q 004615 212 GAEDNFKGVVDLVKMKAIIWSGE 234 (742)
Q Consensus 212 ~~~~~f~g~idl~~~~~~~~~~~ 234 (742)
++...|.|++|++.++++.|.+.
T Consensus 187 ~e~~~~~r~i~~~~~~~~~~r~~ 209 (225)
T cd01882 187 TEIHNLARFISVMKFRPLNWRNS 209 (225)
T ss_pred HHHHHHHHHHHhCCCCCCeeecC
Confidence 88899999999999999999753
No 136
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.49 E-value=1.4e-13 Score=134.10 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=77.9
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHH--------HHHHH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL--------EVERA 140 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~--------ev~~a 140 (742)
|+|+++|++++|||+++..+..+... .+...+.|.......+.+++..++|+||||+.++.. ....+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-----VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-----cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHH
Confidence 68999999999999998887664321 111235566666666777889999999999864211 12222
Q ss_pred H-HhhceEEEEEeCCCCCc---ccHHHHHHHHHHc--CCCeEEEEecccCCC
Q 004615 141 L-RVLDGAICLFDSVAGVE---PQSETVWRQADKY--GVPRICFVNKMDRLG 186 (742)
Q Consensus 141 l-~~~DgailVVDa~~Gv~---~qT~~v~~~a~~~--~ip~il~INK~Dr~~ 186 (742)
+ ..+|++|+|+|+..... .....++..+... ++|+|+++||+|...
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 2 23699999999986432 1123445555555 899999999999864
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.49 E-value=2.1e-13 Score=132.97 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=78.9
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCe-EEEEEcCCCccC-------cHHHHHHHH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVD-------FTLEVERAL 141 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~-~inlIDTPGh~D-------F~~ev~~al 141 (742)
||+++|++++||||++..+......... .-+.|+......+.++++ .++|+||||+.+ +.....+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~-----~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD-----YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC-----CCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH
Confidence 7999999999999998887653321111 124566666666777777 999999999753 344556667
Q ss_pred HhhceEEEEEeCCCC-CcccHHHHH-HHHHH-----cCCCeEEEEecccCCC
Q 004615 142 RVLDGAICLFDSVAG-VEPQSETVW-RQADK-----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 142 ~~~DgailVVDa~~G-v~~qT~~v~-~~a~~-----~~ip~il~INK~Dr~~ 186 (742)
+.+|++++|+|+..+ -..+...-| +.+.. .+.|+++++||+|...
T Consensus 77 ~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 77 ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 789999999999876 222333333 33333 3689999999999754
No 138
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.49 E-value=1.6e-13 Score=132.87 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=74.2
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCc----cCcHHHHHHHHHhh
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----VDFTLEVERALRVL 144 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh----~DF~~ev~~al~~~ 144 (742)
++|+++|++++|||+++..+...... + . ....+.|... ++|||||. .++..++..+++.+
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~-~-----------~--~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~a 65 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL-A-----------R--KTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDV 65 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc-C-----------c--cceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcC
Confidence 47999999999999988776532211 1 1 2233344433 47999995 56778888889999
Q ss_pred ceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 188 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~ 188 (742)
|++|+|+|+.++...++..++.. ..+.|+++++||+|+...+
T Consensus 66 d~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 66 DMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD 107 (158)
T ss_pred CEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc
Confidence 99999999998876666544442 3578999999999986533
No 139
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.49 E-value=2.3e-13 Score=133.59 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=80.2
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
...+|+++|+.++|||+++..+..+. +.. .+ -|+......+.++++.++++||||+..|.......++.+|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~-~~~---~~----~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGED-IDT---IS----PTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC-CCC---cC----CccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 34689999999999999887765431 111 11 23333334566778999999999999998888888999999
Q ss_pred EEEEEeCCCCCccc-HHHHHHH----HHHcCCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQ-SETVWRQ----ADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~q-T~~v~~~----a~~~~ip~il~INK~Dr~~ 186 (742)
+++|+|+...-.-+ ....+.. ....++|+++++||+|+..
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 99999998752111 1122222 2236799999999999865
No 140
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=3.9e-13 Score=151.74 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=94.3
Q ss_pred cEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC----c----HHHHH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD----F----TLEVE 138 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D----F----~~ev~ 138 (742)
+.|+++|++++||||++.++.... .+.+ .-|+|.+.....+.|.++.++||||||+.+ + ...+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~------~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 75 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD------TPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAE 75 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC------CCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHH
Confidence 579999999999999888875443 2222 257888888888999999999999999988 3 34456
Q ss_pred HHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 139 RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 139 ~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
.+++.+|++|+|+|+.+|....+..+++++++.++|+|+++||+|..
T Consensus 76 ~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 76 LAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 78899999999999999998888888999999999999999999954
No 141
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.46 E-value=8.4e-13 Score=129.87 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=83.6
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
..+|+++|+.++|||+++..+..|... .. .-|+......+.+++..+.|+||||+..|.......++.+|++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~~-------~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 86 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-HT-------SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAV 86 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-Cc-------CCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 468999999999999988777655421 11 2355555667888899999999999999998888999999999
Q ss_pred EEEEeCCCCCccc-HHH-HHHHHHH---cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQ-SET-VWRQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~q-T~~-v~~~a~~---~~ip~il~INK~Dr~~ 186 (742)
|+|+|+++.-..+ .+. +.+.... .++|+++++||+|+..
T Consensus 87 i~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 87 ILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 9999998753211 122 2333222 3689999999999865
No 142
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.44 E-value=9.9e-13 Score=127.26 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=77.8
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
-+|+++|.+++|||+++.+.-.+.....+.+.. ...-...+.+++ ..++++||||+.+|...+...++.+|+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 76 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI------EDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEG 76 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc------cceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCE
Confidence 489999999999999887765544333332211 111122334444 578999999999999999999999999
Q ss_pred EEEEEeCCCCCcccHHH-HHHHH----HHcCCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQSET-VWRQA----DKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT~~-v~~~a----~~~~ip~il~INK~Dr~~ 186 (742)
+++|+|+.+....+... ++... ...++|+++++||+|+..
T Consensus 77 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 77 FLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 99999998743322221 22222 235789999999999754
No 143
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.44 E-value=6.8e-13 Score=132.17 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=82.0
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
...|+++|+.++|||+++..+..+.. + ....|+......+.+.+..++++||||+.+|.......++.+|++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~--~------~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRL--A------QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC--c------ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 46889999999999999887755331 0 012244445567788899999999999999988888889999999
Q ss_pred EEEEeCCCCCcc-cHHHHHHHH----HHcCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEP-QSETVWRQA----DKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~-qT~~v~~~a----~~~~ip~il~INK~Dr~~ 186 (742)
++|+|+.+.-.. .....+... ...+.|+++++||+|+..
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 999999864211 122223222 235699999999999865
No 144
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.44 E-value=9.1e-13 Score=126.06 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=85.3
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHH--------HHHHH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE--------VERAL 141 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~e--------v~~al 141 (742)
+|+++|++.+|||+.+..+..+...... -..|+|.......+.+.+..++++||||+.++... +...+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVS----DIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEecc----CCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 6999999999999998887654311111 12577777777788888999999999999887533 44577
Q ss_pred HhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 142 RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 142 ~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
+.+|++++|+|+...........+.+ ..+.|+++++||+|+..
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 88999999999997655555555554 56899999999999865
No 145
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.44 E-value=1.7e-13 Score=130.30 Aligned_cols=113 Identities=20% Similarity=0.266 Sum_probs=84.0
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
.+|+++|++.+|||+++..+..+. .+.+..+++|.......+.+++ +.++++|||||.+|........+.+++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 76 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-----FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVES 76 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-----CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhE
Confidence 589999999999999998876644 2334456888887777788888 889999999999996666555665555
Q ss_pred EEEEEeC-------CCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 147 AICLFDS-------VAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 147 ailVVDa-------~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
++.++|. ..+...+...+++.+.. ++|+++++||+|+...
T Consensus 77 ~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 77 SLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred EEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc
Confidence 5555554 44444555555665544 8999999999998653
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.43 E-value=1.1e-12 Score=131.95 Aligned_cols=123 Identities=19% Similarity=0.260 Sum_probs=84.1
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH-----------H
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT-----------L 135 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~-----------~ 135 (742)
...+|+++|+.++|||+++..+..+.. ..+...|+|.... .+.++ .++++||||+.++. .
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-----~~~~~~~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-----RVGKRPGVTRKPN--HYDWG--DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-----ccCCCCceeeCce--EEeec--ceEEEeCCccccccccCHHHHHHHHH
Confidence 457899999999999999888765331 2223458887644 44444 68999999964322 1
Q ss_pred HH----HHHHHhhceEEEEEeCCCC-----------CcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHH
Q 004615 136 EV----ERALRVLDGAICLFDSVAG-----------VEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 199 (742)
Q Consensus 136 ev----~~al~~~DgailVVDa~~G-----------v~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~ 199 (742)
.+ .+++..+|++++|+|+... ...+++.+++.+...++|+++++||+|+...+ .+..+++.+.
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~ 156 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAER 156 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHH
Confidence 11 1244567899999999653 23456778888888899999999999986543 2333444433
No 147
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=124.17 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=97.8
Q ss_pred ccEEEEEeecccCcccccceeccCCc--c-----CCCcHhHHhhcceEecceEEEEecC-eEEEEEcCCCccCcHHHHHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTA--T-----MDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVDFTLEVER 139 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~--~-----~D~~~~E~erGITi~s~~~~~~~~~-~~inlIDTPGh~DF~~ev~~ 139 (742)
...|+|+|...+||++.+..+.+... + .+.... .|-+|+-...-++.+++ +.++|.|||||..|...+.-
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~--kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKG--KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccccccccc--ccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHH
Confidence 36799999999999998877755331 1 111111 45588888888888877 99999999999999999999
Q ss_pred HHHhhceEEEEEeCCCCCcccHHHHHHHHHHcC-CCeEEEEecccCCCCC
Q 004615 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRLGAN 188 (742)
Q Consensus 140 al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~-ip~il~INK~Dr~~~~ 188 (742)
.++.++|+|++||++.+..-..+.+++.....+ +|.++++||.|+..+.
T Consensus 88 l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL 137 (187)
T ss_pred HhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC
Confidence 999999999999999987776688888888777 9999999999988754
No 148
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.43 E-value=6.2e-13 Score=131.46 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=83.8
Q ss_pred CCccEEEEEeecccCcccccceeccCC---ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc----------C
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT---ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----------D 132 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~---~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~----------D 132 (742)
.+..+|+|+|+.++|||+.+..+...+ .+.+ ..|.|..... +.++ ..+.|+||||+. +
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~--~~~~-~~~~liDtpG~~~~~~~~~~~~~ 86 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSK------TPGRTQLINF--FEVN-DGFRLVDLPGYGYAKVSKEEKEK 86 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC------CCCcceEEEE--EEeC-CcEEEEeCCCCccccCChhHHHH
Confidence 556899999999999999988775532 1122 1345554332 2333 479999999963 3
Q ss_pred cHHHHHHHHH---hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 133 FTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 133 F~~ev~~al~---~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
|...+...++ .+|++++|+|+..++..++..+++.+...++|+++++||+|+..
T Consensus 87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 4444444444 46899999999999999999999999999999999999999864
No 149
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.43 E-value=1.4e-12 Score=124.57 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=82.5
Q ss_pred EEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEE
Q 004615 71 FSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICL 150 (742)
Q Consensus 71 i~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~DgailV 150 (742)
|+++|+..+|||+++..+..++...++.+ |+......+.+++..++++||||+..|.......++.+|++++|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~-------t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 74 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP-------TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYV 74 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC-------CCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 78999999999999988877654434332 33333345667788999999999999999999999999999999
Q ss_pred EeCCCCCc-ccHHHHHHHHHH----cCCCeEEEEecccCCCC
Q 004615 151 FDSVAGVE-PQSETVWRQADK----YGVPRICFVNKMDRLGA 187 (742)
Q Consensus 151 VDa~~Gv~-~qT~~v~~~a~~----~~ip~il~INK~Dr~~~ 187 (742)
+|+...-. .+....|..... .++|+++++||+|....
T Consensus 75 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 75 VDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 99976321 223334444332 57899999999997653
No 150
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=5.4e-13 Score=129.96 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=83.2
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
..++|+++|+.++|||+++..+..+.... +....++++.....+.+.+ ..+.++||||+.+|.......++.+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-----GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-----CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 45899999999999999988775443211 1112233344455667766 4577899999999999999999999
Q ss_pred ceEEEEEeCCCCCcccHHHHH----HHHHHcCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVW----RQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~----~~a~~~~ip~il~INK~Dr~~ 186 (742)
|++|+|+|...+...+....| ++....++|.+++.||+|+..
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 81 NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 999999999876444333334 222335789999999999753
No 151
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.40 E-value=4.3e-12 Score=122.15 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=82.6
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH--------HHHHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT--------LEVER 139 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~--------~ev~~ 139 (742)
...|+++|.+.+||||.+..+.... +. ......+.|.......+...+..+.++||||+.+.. .....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQK-IS---IVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCc-eE---eccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 3679999999999999887764321 00 000011223333333344567889999999987643 24456
Q ss_pred HHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 140 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 140 al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
.++.+|++++|+|+......+...+++++...+.|.++++||+|+..
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred HHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 68899999999999988666777778888888999999999999863
No 152
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.40 E-value=2.2e-12 Score=128.21 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=81.5
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
-.+|+++|..++|||+.+.++..+. +..+. -|.......+.+++..++++||||+..|.......++.+|++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~-~~~~~-------~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDR-LAQHQ-------PTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCC-CcccC-------CccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 4789999999999999888776542 11111 133334456677899999999999999988888899999999
Q ss_pred EEEEeCCCCCc-ccHHHHHHHHH----HcCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVE-PQSETVWRQAD----KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~-~qT~~v~~~a~----~~~ip~il~INK~Dr~~ 186 (742)
|+|+|+.+.-. .+....+.... ..++|+++++||+|+..
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 99999976421 12222333332 25799999999999864
No 153
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.39 E-value=2.3e-12 Score=124.60 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=83.4
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|++++|||+.+.++..++. ..+..+.++.......+.+++ ..++|+||||+..|.......++.+|++
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 76 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF-----SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGA 76 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-----CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEE
Confidence 689999999999999888765432 111223445444455566655 6899999999999999999999999999
Q ss_pred EEEEeCCCCCcccHHHHHH-HHHH---cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~~-~a~~---~~ip~il~INK~Dr~~ 186 (742)
|+|+|+......+....|. .... .++|+++++||+|...
T Consensus 77 ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 77 LLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 9999998765555444443 3333 4689999999999653
No 154
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.39 E-value=1.4e-12 Score=146.75 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=89.7
Q ss_pred cEEEEEeecccCcccccceeccCCc--cCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHH--------H
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTA--TMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV--------E 138 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~--~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev--------~ 138 (742)
.+|+++|++++|||+++..+..++. +.+. .|.|.+.....+.++++.++|+||||+.++...+ .
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~------~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDI------AGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCC------CCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 5899999999999999988865442 3443 6788888888888999999999999998775432 3
Q ss_pred HHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 139 RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 139 ~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
..++.+|++|+|+|+..+...+...+|.. ..+.|+++++||+|+..
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 35778999999999998877777777766 56789999999999864
No 155
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.39 E-value=3e-12 Score=121.74 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=87.4
Q ss_pred EEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec-CeEEEEEcCCCccCcH-------HHHHHHHHhh
Q 004615 73 VFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFT-------LEVERALRVL 144 (742)
Q Consensus 73 iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~-~~~inlIDTPGh~DF~-------~ev~~al~~~ 144 (742)
++|++.+|||+.+..+....... ....++.|.......+.+. +..++|+||||+.++. ......++.+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~ 76 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI----VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERA 76 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc----cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhC
Confidence 58999999999888775432111 2233567777777777666 7899999999998874 3556688999
Q ss_pred ceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
|++++|+|+..+....+..++.+....++|.++++||+|+...
T Consensus 77 d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 77 DLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 9999999999988777777677888899999999999998753
No 156
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.39 E-value=1.8e-12 Score=128.66 Aligned_cols=112 Identities=15% Similarity=0.206 Sum_probs=78.1
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEE---ecCeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY---WNKHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~---~~~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
-.|+++|+.++|||+.+.++..+.. .+..+ ..|++.. ...+. +.+..++|+||||+..|.......++.+|
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~---t~~~~~~--~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 77 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVP---TKGFNTE--KIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTD 77 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc-CCcCC---cccccee--EEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCC
Confidence 3689999999999999888755432 22211 1233332 22332 35688999999999999887888889999
Q ss_pred eEEEEEeCCCCCcccH-----HHHHHHHHHcCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQS-----ETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT-----~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
++|+|+|+...-..+. ..+++.....++|+++++||+|...
T Consensus 78 ~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 78 GIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 9999999987522221 2233333446799999999999753
No 157
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.39 E-value=3.9e-12 Score=124.47 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=79.2
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
..+|+++|+.++|||+++.++..+.. .++.+ |+......+.+.+..++|+||||+..|.......++.+|++
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~-------t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~i 80 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIP-------TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 80 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC-ccccC-------CcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 36899999999999998887754432 22211 22222335556789999999999999988778888999999
Q ss_pred EEEEeCCCCCc-ccHHHHHHHHHH----cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVE-PQSETVWRQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~-~qT~~v~~~a~~----~~ip~il~INK~Dr~~ 186 (742)
|+|+|+.+-.. .+....|..... .++|++++.||+|...
T Consensus 81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 81 IFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 99999987321 122333433322 4689999999999754
No 158
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.39 E-value=1.7e-12 Score=130.57 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=77.8
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|+.++|||+++.++-.+.....+ +..+.......+.+++ ..++|+|||||.+|.......++.+|++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 74 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKY------RRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAF 74 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC------CCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEE
Confidence 4799999999999998877654422111 1111122234555655 6789999999999988888889999999
Q ss_pred EEEEeCCCCCcccHHHHH-HHH----HHcCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~-~~a----~~~~ip~il~INK~Dr~~ 186 (742)
|+|+|+.+.-.-+....| ..+ ...++|+|+++||+|+..
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 75 ALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 999999875333322222 222 225799999999999754
No 159
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.38 E-value=2.7e-12 Score=124.16 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=79.3
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|+.++|||+++.++..++..-.. +...|.+.....+.+...+..++++||||+..|.......++.+|++|+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ---ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC---CCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 6899999999999998777654421111 1222333333444444455788999999999998888888899999999
Q ss_pred EEeCCCCCcc-cHHHHHHHHHHc---CCCeEEEEecccCCC
Q 004615 150 LFDSVAGVEP-QSETVWRQADKY---GVPRICFVNKMDRLG 186 (742)
Q Consensus 150 VVDa~~Gv~~-qT~~v~~~a~~~---~ip~il~INK~Dr~~ 186 (742)
|+|+...-.- +...+++.+... ++|+++++||+|+..
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 9999864322 233334444443 478999999999763
No 160
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.38 E-value=2.6e-12 Score=125.79 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=80.9
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
..+|+++|+..+|||+++..+..... ... ..|.......+.+.+..++++||||+..|...+...++.+|++
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~-~~~-------~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDI-SHI-------TPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCC-ccc-------CCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 47899999999999999888765421 111 1122222345667889999999999999988888899999999
Q ss_pred EEEEeCCCCCc-ccHHHHH----HHHHHcCCCeEEEEecccCCCC
Q 004615 148 ICLFDSVAGVE-PQSETVW----RQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 148 ilVVDa~~Gv~-~qT~~v~----~~a~~~~ip~il~INK~Dr~~~ 187 (742)
++|+|+.+-.. .++...+ +.....++|+++++||+|+...
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 99999976211 1222222 2233457999999999998653
No 161
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.38 E-value=2.7e-12 Score=124.42 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=76.4
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
.|+++|.+++|||+++.++..+....++.+-.. ..-...+.++ ...++++||||+.+|.......++.+|++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~ 75 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE------DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGF 75 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh------hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEE
Confidence 689999999999999887766553333322111 1111233333 36788999999999999889999999999
Q ss_pred EEEEeCCCCCcccHHHHH-HHH----HHcCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~-~~a----~~~~ip~il~INK~Dr~~ 186 (742)
++|+|+...-.-+...-| ... ...++|++++.||+|+..
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 76 LLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999864322222222 222 224789999999999754
No 162
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.38 E-value=2.4e-12 Score=124.40 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=80.1
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceE--ecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITI--TSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi--~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|++++|||+++..+-.++....+ ...+++ .+....+......++|+|||||.+|.......++.+|++
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~ 76 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS-----QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGA 76 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-----CCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEE
Confidence 7899999999999988877554321111 122222 222233333346889999999999998889999999999
Q ss_pred EEEEeCCCCCcccHHHHH-HHHH---HcCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~-~~a~---~~~ip~il~INK~Dr~~ 186 (742)
|+|+|+.++...+....| .... ..++|++++.||+|...
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 77 LLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 999999987655554444 3222 35889999999999754
No 163
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.38 E-value=4.6e-12 Score=122.75 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=78.6
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|+.++|||+++-++..|.-. ++.+ |+......+.+....++|+||||+..|.......++.+|++|+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~p-------t~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~ 73 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP-------TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCC-------CCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 5899999999999988887655432 3322 2222233456678999999999999988888888999999999
Q ss_pred EEeCCCCC-cccHHHHHHHHHH----cCCCeEEEEecccCCC
Q 004615 150 LFDSVAGV-EPQSETVWRQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 150 VVDa~~Gv-~~qT~~v~~~a~~----~~ip~il~INK~Dr~~ 186 (742)
|+|+.+-- ..+....|+.... .+.|++++.||+|+..
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 99997631 1122333443322 3589999999999854
No 164
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.38 E-value=2.2e-12 Score=125.05 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=80.5
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|+..+|||+++.+.-.+.-.-.. ....+.++......+..+...++|+||||+..|.......++.+|++|+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQ---LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACIL 78 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc---CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence 6899999999999988776543211110 0112333333333344456789999999999999999999999999999
Q ss_pred EEeCCCCCcccHHHHH-HHHHHc--CCCeEEEEecccCC
Q 004615 150 LFDSVAGVEPQSETVW-RQADKY--GVPRICFVNKMDRL 185 (742)
Q Consensus 150 VVDa~~Gv~~qT~~v~-~~a~~~--~ip~il~INK~Dr~ 185 (742)
|+|+......+...-| ....+. ++|++++.||+|+.
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 9999887655544334 444443 79999999999974
No 165
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.38 E-value=5.8e-12 Score=124.07 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=81.9
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
...|+++|...+|||+++-++..|.. .++. -|+......+.+++..++|+||||+..|.......++.+|++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~~~-------~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~i 84 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-VTTI-------PTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGL 84 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CCcC-------CccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 46899999999999998887755542 2221 233333445667889999999999999988888889999999
Q ss_pred EEEEeCCCCC-cccHHHHHHHHHH----cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGV-EPQSETVWRQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv-~~qT~~v~~~a~~----~~ip~il~INK~Dr~~ 186 (742)
|+|+|+++-- .....+.|..... .++|++++.||.|+..
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 9999987531 1223444444432 3689999999999864
No 166
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.38 E-value=3.3e-12 Score=125.01 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=78.8
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|..++|||+++.++..+. ..++ ..|+......+.+++..++++||||+.+|.......++.+|++|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-~~~~-------~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 72 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-FMQP-------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVF 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-CCCc-------CCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEE
Confidence 47899999999999888776542 2222 123333334567789999999999999998888889999999999
Q ss_pred EEeCCCCC-cccHHHHHHHHHH----cCCCeEEEEecccCCC
Q 004615 150 LFDSVAGV-EPQSETVWRQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 150 VVDa~~Gv-~~qT~~v~~~a~~----~~ip~il~INK~Dr~~ 186 (742)
|+|+..-- .......+....+ .+.|++++.||+|+..
T Consensus 73 V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 73 VVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 99987631 1112233343332 2479999999999754
No 167
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.37 E-value=4.4e-12 Score=139.72 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=84.6
Q ss_pred ccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCe-EEEEEcCCCccC-------cHHHHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVD-------FTLEVE 138 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~-~inlIDTPGh~D-------F~~ev~ 138 (742)
+-.|+++|.+|+||||++..+...+ .+.++ .+.|.......+.+.+. .|.|+||||... +...+.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~------p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l 232 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADY------PFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFL 232 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCC------CCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHH
Confidence 3479999999999999998886433 33343 46787777777888764 699999999764 455677
Q ss_pred HHHHhhceEEEEEeCCC----CCcccHHHHHHHHHHc-----CCCeEEEEecccCCC
Q 004615 139 RALRVLDGAICLFDSVA----GVEPQSETVWRQADKY-----GVPRICFVNKMDRLG 186 (742)
Q Consensus 139 ~al~~~DgailVVDa~~----Gv~~qT~~v~~~a~~~-----~ip~il~INK~Dr~~ 186 (742)
+.+..+|++++|||+.. ....+...+++++..+ +.|.|+++||+|...
T Consensus 233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 88999999999999872 2223334555655553 589999999999754
No 168
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.37 E-value=4.6e-12 Score=122.38 Aligned_cols=112 Identities=18% Similarity=0.289 Sum_probs=80.7
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec----CeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----KHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~----~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
+|+++|..++|||+++.++..+....++ ...+..+.....+.++ ...++|+||||+.+|.......++.+|
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 76 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDY-----KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQ 76 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCC
Confidence 6899999999999998877665432222 2233333333334443 568999999999999998999999999
Q ss_pred eEEEEEeCCCCCcccHHHHHHHHHH---cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSETVWRQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~v~~~a~~---~~ip~il~INK~Dr~~ 186 (742)
++++|+|+.+.-..+...-|..... .++|+++++||+|+..
T Consensus 77 ~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 77 ACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 9999999987544444334433222 3899999999999753
No 169
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.36 E-value=7.2e-12 Score=126.42 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=78.6
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCe-EEEEEcCCCccCc-HH-------H
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVDF-TL-------E 136 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~-~inlIDTPGh~DF-~~-------e 136 (742)
+..++|+++|++++|||+++..+..+...... .-+.|+......+.+.+. .++|+||||+.+. .. .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 113 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED-----QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRS 113 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC-----ccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHH
Confidence 34689999999999999998877654311111 124456555666667664 9999999998542 11 1
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHHHHH-HHH---HHcCCCeEEEEecccCCC
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~~v~-~~a---~~~~ip~il~INK~Dr~~ 186 (742)
+...++.+|++++|+|+..+...+....| +.. ...++|+++++||+|+..
T Consensus 114 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 114 TLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred HHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 22335679999999999887544433222 222 234689999999999865
No 170
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.36 E-value=5.5e-12 Score=123.02 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=76.3
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|++++|||+++.++-.+..-. +....++.+.....+.+.+ ..++++||||+.+|.......++.+|++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 76 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN-----QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCC 76 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-----CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEE
Confidence 68999999999999988875543110 1111112222223344544 5678999999999998888999999999
Q ss_pred EEEEeCCCCCcccHHHHHHHH--H------HcCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSETVWRQA--D------KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~~~a--~------~~~ip~il~INK~Dr~~ 186 (742)
|+|+|+......+...-|... . ..++|+++++||+|+..
T Consensus 77 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 77 VLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 999999875433333233221 1 12789999999999863
No 171
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.35 E-value=8e-12 Score=134.93 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=82.3
Q ss_pred CCccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecC-eEEEEEcCCCccC-------cHHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD-------FTLE 136 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~-~~inlIDTPGh~D-------F~~e 136 (742)
..+..|+++|.+++||||++..+.... .+.++ -..|.....-.+.+.+ +.|.|+||||+.+ +...
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y------~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~ 228 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADY------PFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHR 228 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccccCC------CCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHH
Confidence 345789999999999999998887654 33333 2456666666777776 8999999999863 3445
Q ss_pred HHHHHHhhceEEEEEeCCCC---CcccH-HHHHHHHHH-----cCCCeEEEEecccCCC
Q 004615 137 VERALRVLDGAICLFDSVAG---VEPQS-ETVWRQADK-----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~G---v~~qT-~~v~~~a~~-----~~ip~il~INK~Dr~~ 186 (742)
..+.+..+|++|+|+|+... -..+. +.+.+++.. .+.|+++++||+|...
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 56777789999999998753 11122 233333433 3689999999999864
No 172
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.35 E-value=4.1e-12 Score=122.67 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=76.7
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|.+++|||+++..+..+....++.+....+ . .....+..+...+.|+||||+.+|.......++.+|++++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS---Y-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLL 77 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh---E-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEE
Confidence 68999999999999877765544333332211100 0 0112222345789999999999999999999999999999
Q ss_pred EEeCCCCC-----cccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 150 LFDSVAGV-----EPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 150 VVDa~~Gv-----~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
|+|....- ......+++.....++|+++++||+|...
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 99987532 11222222222236899999999999754
No 173
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.34 E-value=8.5e-12 Score=121.52 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=82.0
Q ss_pred EEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEE
Q 004615 71 FSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICL 150 (742)
Q Consensus 71 i~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~DgailV 150 (742)
|+++|...+|||+++.+...+....++. -|+......+.+++..+.|+||||+.+|.......++.+|++|+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~-------pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V 74 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV-------PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc-------ccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 7899999999999888876654322222 233333456778899999999999999998889999999999999
Q ss_pred EeCCCCCccc-HHHHHHHHH--HcCCCeEEEEecccCCCC
Q 004615 151 FDSVAGVEPQ-SETVWRQAD--KYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 151 VDa~~Gv~~q-T~~v~~~a~--~~~ip~il~INK~Dr~~~ 187 (742)
+|+.+.-... .+..+..+. ..++|++++.||+|+...
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 9998743222 222333333 257999999999998654
No 174
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.34 E-value=1.1e-11 Score=119.65 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=82.6
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|++++|||+++..+-.++. ..+...+++++.....+.+++ .+++++||||+..|...+...++.+|++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~i 76 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF-----DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVA 76 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-----CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 799999999999998877644321 112335566666666666765 5689999999999998889999999999
Q ss_pred EEEEeCCCCCcccHHH-HHHHHH-Hc--CCCeEEEEecccCC
Q 004615 148 ICLFDSVAGVEPQSET-VWRQAD-KY--GVPRICFVNKMDRL 185 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~-v~~~a~-~~--~ip~il~INK~Dr~ 185 (742)
|+|+|....-..+... .+.+.. .. ++|+++++||+|..
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 77 VVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 9999998764443333 333332 33 38999999999974
No 175
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.34 E-value=6.5e-12 Score=122.57 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=78.7
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEe-cceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITIT-SAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~-s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
+|+++|.+++|||+.+.....|....++.+ |+. ....++.+++ ..++++||||+.+|.......++.+|+
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~-------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 75 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDP-------TIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQG 75 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCC-------cchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCE
Confidence 689999999999999888776654333322 121 1123344544 577899999999999999999999999
Q ss_pred EEEEEeCCCCCcccHHH-----HHHHHHHcCCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQSET-----VWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT~~-----v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
+|+|+|....-.-+... +++.....++|++++.||+|+..
T Consensus 76 ~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 76 FLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 99999988653332222 22222345799999999999753
No 176
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.33 E-value=6e-12 Score=121.53 Aligned_cols=113 Identities=17% Similarity=0.224 Sum_probs=78.2
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|..++|||+.+.++..+....+. +..-|.+.....+.+......++|+||||+..|.......++.+|++|+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDL---AATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL 78 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccc---CCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence 6899999999999988776554322221 1122333332223232234678999999999998888888999999999
Q ss_pred EEeCCCCCcccHHHHH-HHH----HHcCCCeEEEEecccCC
Q 004615 150 LFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRL 185 (742)
Q Consensus 150 VVDa~~Gv~~qT~~v~-~~a----~~~~ip~il~INK~Dr~ 185 (742)
|+|.......+....| ..+ ...++|+++++||+|+.
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 9999875444433333 222 23578999999999986
No 177
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.33 E-value=1e-11 Score=134.27 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=84.6
Q ss_pred CccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEe-cCeEEEEEcCCCccC-------cHHHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD-------FTLEV 137 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~-~~~~inlIDTPGh~D-------F~~ev 137 (742)
-+..|+++|.+++||||++..+.... .+.|+ .+.|+....-.+.+ ++..|.++||||..+ +..+.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~y------pfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~f 230 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADY------PFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRF 230 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCC------CCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHH
Confidence 45679999999999999998886533 34444 45788888888888 567899999999754 44566
Q ss_pred HHHHHhhceEEEEEeCCCCCcccH-HHHHHHHHH-----cCCCeEEEEecccCCC
Q 004615 138 ERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK-----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 138 ~~al~~~DgailVVDa~~Gv~~qT-~~v~~~a~~-----~~ip~il~INK~Dr~~ 186 (742)
.+.+..+|++|+|||+.+--..+. +.+...+.. .+.|.++++||+|...
T Consensus 231 lrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 231 LKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred HHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 777788999999999885322233 333344443 3689999999999764
No 178
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.33 E-value=1.5e-11 Score=118.46 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=76.2
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|.+++|||+++.++..+.....+.+. +...-...+.+++ +.++++||||+..|.......++.+|++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~ 76 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPT------IEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 76 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCCc------chheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEE
Confidence 6899999999999988777655422222211 1111122333444 5688999999999999999999999999
Q ss_pred EEEEeCCCCCcccHH-HHHHHHH----HcCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~-~v~~~a~----~~~ip~il~INK~Dr~~ 186 (742)
++|+|.......+.. ..+.... ..++|++++.||+|+..
T Consensus 77 i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 77 LCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999998864322222 2223332 34789999999999754
No 179
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.33 E-value=9.8e-12 Score=123.32 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=78.8
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
..|+++|..++|||+++-++..|... ++. -|+......+.+.+..++|+||||+..|.......++.+|++|
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~-~~~-------~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV-TTI-------PTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC-------CccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 57999999999999988887655332 221 1333333456678899999999999999888888899999999
Q ss_pred EEEeCCCCC-cccHHHHHHHHHH----cCCCeEEEEecccCCC
Q 004615 149 CLFDSVAGV-EPQSETVWRQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 149 lVVDa~~Gv-~~qT~~v~~~a~~----~~ip~il~INK~Dr~~ 186 (742)
+|+|+.+-- -.+....|..... .+.|++++.||.|...
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 999987521 1112223333322 3588999999999764
No 180
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.33 E-value=1e-11 Score=119.72 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=76.4
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe-cCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~-~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
.|+++|..++|||+.+..+..+.... ..+ ..|+++ ..+.+ +.+.++++||||+..|...+...++.+|++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~---t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv 72 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIP---TVGFNV----EMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLV 72 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccC---ccCcce----EEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 37899999999999988876655322 111 122222 23333 3578999999999999888888899999999
Q ss_pred EEEeCCCCCcc-cHHHHHHHHH----HcCCCeEEEEecccCCC
Q 004615 149 CLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 149 lVVDa~~Gv~~-qT~~v~~~a~----~~~ip~il~INK~Dr~~ 186 (742)
+|+|+.+.-.. +....+.... ..++|+++++||+|+..
T Consensus 73 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 73 YVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred EEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 99999875311 1122233222 25799999999999854
No 181
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.33 E-value=1.9e-11 Score=121.18 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=79.8
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
..+|+++|..++|||+++-++..|... .+. -|+......+.+++..++|+||||+..|.......++.+|++
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~-------pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~i 88 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-ccc-------CCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 358999999999999988777554322 221 122223345677899999999999999988888889999999
Q ss_pred EEEEeCCCCCccc-HHHHHHHHHH----cCCCeEEEEecccCCCC
Q 004615 148 ICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLGA 187 (742)
Q Consensus 148 ilVVDa~~Gv~~q-T~~v~~~a~~----~~ip~il~INK~Dr~~~ 187 (742)
|+|+|+.+.-.-+ .+..+..... .++|++++.||+|+...
T Consensus 89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 9999998632211 1222232221 36899999999998653
No 182
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.32 E-value=1.3e-11 Score=138.27 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=91.2
Q ss_pred ccEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHH--------
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV-------- 137 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev-------- 137 (742)
..+|+++|++++|||+++..+..++ .+.++ .|+|.+.....+.++++.++|+||||+.++...+
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~------pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~ 276 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI------KGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKS 276 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCC------CCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHH
Confidence 4689999999999999998876543 34444 6889888888899999999999999997765433
Q ss_pred HHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 138 ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 138 ~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
...++.+|++|+|+|+..+...+.. ++..+...+.|+|+|+||+|+...
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc
Confidence 3567889999999999987665554 667777778999999999998643
No 183
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.32 E-value=1.3e-11 Score=120.56 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=82.4
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|...+|||+++..+..+ ..+ +..-|+.....++.++++.++++||||+..|.......++.+|++|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~------~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~ 72 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPK------KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVF 72 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCc------cccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEE
Confidence 4899999999999988776543 111 12234444455777889999999999999999888999999999999
Q ss_pred EEeCCCCCccc-HHHHHHHHHH----cCCCeEEEEecccCCCCC
Q 004615 150 LFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLGAN 188 (742)
Q Consensus 150 VVDa~~Gv~~q-T~~v~~~a~~----~~ip~il~INK~Dr~~~~ 188 (742)
|+|+..--..+ ....+....+ .++|+++++||+|+..+.
T Consensus 73 V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 73 VVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred EEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 99998642222 2333444333 478999999999987643
No 184
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.32 E-value=1.4e-11 Score=123.22 Aligned_cols=115 Identities=18% Similarity=0.272 Sum_probs=80.6
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc----------CcHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----------DFTL 135 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~----------DF~~ 135 (742)
...++|+++|+.++|||+++..+..+...... ....|.|....... + +..++|+||||+. .|..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~---~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLART---SKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccc---cCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 46689999999999999998887654211111 11234554433322 2 4789999999963 2333
Q ss_pred HHHHHHHh---hceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 136 EVERALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 136 ev~~al~~---~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
.+...++. ++++++|+|+..+....+..+++.+...++|+++++||+|...
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 33444444 4688899999888777777778888888999999999999864
No 185
>PTZ00369 Ras-like protein; Provisional
Probab=99.32 E-value=1.4e-11 Score=122.80 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=78.0
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
.-+|+++|+.++|||+++.+...+.....+.+.. |-+. .....+..+.+.++|+||||+.+|...+...++.+|++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~---~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI---EDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch---hhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 3589999999999999887766554322221110 1111 11122333456789999999999999999999999999
Q ss_pred EEEEeCCCCCcccHHHHH-HHHH----HcCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~-~~a~----~~~ip~il~INK~Dr~~ 186 (742)
|+|+|....-.-+...-| .... ..++|++++.||+|+..
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999875432222222 2232 23789999999999753
No 186
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.31 E-value=1.2e-11 Score=120.34 Aligned_cols=113 Identities=17% Similarity=0.176 Sum_probs=77.5
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
-+|+++|..++|||+++.++..+.....+.+ .-|++.. ..++..+ ...+.|+||||+.+|.......++.+|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~---t~~~~~~--~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~ 76 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS---TVGIDFK--VKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMG 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC---ceeeEEE--EEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcE
Confidence 3799999999999999888766542222211 0122222 2233333 3679999999999999888999999999
Q ss_pred EEEEEeCCCCCcccH-HHHHHHHHH---cCCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT-~~v~~~a~~---~~ip~il~INK~Dr~~ 186 (742)
+++|+|....-.-+. ...++...+ .+.|++++.||+|+..
T Consensus 77 ~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 77 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 999999876432222 222333333 3578999999999754
No 187
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.31 E-value=1.6e-11 Score=119.84 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=80.7
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+-+|+++|++++|||+++..+..+.......+ .-|.+.......+......++|+||||+..|.......++.+|++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL---TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC---ccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 35899999999999998887765542221111 123343333333333346899999999999988888999999999
Q ss_pred EEEEeCCCCCcccHHHHHH-HHHH---cCCCeEEEEecccCC
Q 004615 148 ICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRL 185 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~~-~a~~---~~ip~il~INK~Dr~ 185 (742)
|+|+|+.....-+....|. ...+ .++|++++.||+|+.
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999998654444443343 2333 368999999999975
No 188
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.31 E-value=2e-11 Score=120.44 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=79.0
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
++|+++|++++|||+++.++..+.-...+.+ .+.......+.++ ++.++|+||||+.+|.......+..+|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~------t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 75 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYP------TIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHG 75 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCc------chhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCE
Confidence 6899999999999999887765542221211 1111112233343 4678999999999999888899999999
Q ss_pred EEEEEeCCCCCcccHHH-HHHHHHH----cCCCeEEEEecccCC
Q 004615 147 AICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRL 185 (742)
Q Consensus 147 ailVVDa~~Gv~~qT~~-v~~~a~~----~~ip~il~INK~Dr~ 185 (742)
+++|+|...+...+... +|+...+ .++|.|+++||+|..
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 76 YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 99999999865544433 3333332 468999999999975
No 189
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.30 E-value=1.4e-11 Score=117.66 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=79.8
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe--cCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|.+.+|||+.+..+..+..... ..+..+.......+.+ ....++++||||+..|.......++.+|++
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~i 76 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-----YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGA 76 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-----cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEE
Confidence 689999999999999988765432221 1122333333344444 457899999999999999999999999999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHHc---CCCeEEEEecccCC
Q 004615 148 ICLFDSVAGVEPQS-ETVWRQADKY---GVPRICFVNKMDRL 185 (742)
Q Consensus 148 ilVVDa~~Gv~~qT-~~v~~~a~~~---~ip~il~INK~Dr~ 185 (742)
|+|+|+.+.-..+. ...+...... ++|.++++||+|..
T Consensus 77 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 77 ILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99999987432233 2333344443 48999999999975
No 190
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.30 E-value=8.8e-12 Score=121.98 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=83.5
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHH-HHHHHHHhh
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTL-EVERALRVL 144 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~-ev~~al~~~ 144 (742)
..+|+++|+..+|||+++.++..+.. +.+....++.......+.+++ +.++++||||+.+|.. .....++.+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 76 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF-----PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNV 76 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-----CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCC
Confidence 46899999999999998887755432 222223344444444555555 7899999999999874 456678899
Q ss_pred ceEEEEEeCCCCCcccHHHHHH-HHHH----cCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVWR-QADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~~-~a~~----~~ip~il~INK~Dr~~ 186 (742)
|++|+|+|+......+....|. .+.. .++|++++.||+|+..
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 77 HAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred CEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 9999999999877666666665 4443 3589999999999754
No 191
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.30 E-value=1.2e-11 Score=117.12 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=69.1
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc----CcHHHHHHHHHhhc
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----DFTLEVERALRVLD 145 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~----DF~~ev~~al~~~D 145 (742)
+|+++|++++|||+++.++..+.. .+ .-| ..+.|.. .++||||+. .+...+..+++.+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~-------~~t-----~~~~~~~---~~iDt~G~~~~~~~~~~~~~~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LY-------KKT-----QAVEYND---GAIDTPGEYVENRRLYSALIVTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--cc-------ccc-----eeEEEcC---eeecCchhhhhhHHHHHHHHHHhhcCC
Confidence 699999999999999988765421 00 112 2344444 789999973 23333445678999
Q ss_pred eEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
++|+|+|+.++...++..++.. .+.|.++++||+|+..
T Consensus 65 ~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 65 VIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred EEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 9999999999887777554433 2459999999999753
No 192
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.29 E-value=1.1e-11 Score=121.33 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=77.2
Q ss_pred EEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec-CeEEEEEcCCCccCc-------HHHHHHHHHhh
Q 004615 73 VFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDF-------TLEVERALRVL 144 (742)
Q Consensus 73 iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~-~~~inlIDTPGh~DF-------~~ev~~al~~~ 144 (742)
++|+.++|||+++..+..++. ......+.|+......+.++ ++.++|+||||+.+. ..+..+.++.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 75 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-----KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRA 75 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-----cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhcc
Confidence 579999999999887765432 11122567777777778888 999999999998542 33456678889
Q ss_pred ceEEEEEeCCCCC-----cc--cHHHHHHHHH----------HcCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGV-----EP--QSETVWRQAD----------KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv-----~~--qT~~v~~~a~----------~~~ip~il~INK~Dr~~ 186 (742)
|++++|+|+...- .. +...++.... ..++|+++++||+|+..
T Consensus 76 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 76 DAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred CEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 9999999998762 11 1122222222 14799999999999864
No 193
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.29 E-value=1.5e-11 Score=119.55 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=78.5
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
.|+++|..++|||+++.+...|.-...+.+. ..+.......+.++...++++||||+.+|......+++.+|++|+
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t----~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT----IEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 78 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCc----chheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEE
Confidence 6899999999999988877655421111110 001112223344456789999999999998888888999999999
Q ss_pred EEeCCCCCccc-HHHHHHHHHH------cCCCeEEEEecccCCC
Q 004615 150 LFDSVAGVEPQ-SETVWRQADK------YGVPRICFVNKMDRLG 186 (742)
Q Consensus 150 VVDa~~Gv~~q-T~~v~~~a~~------~~ip~il~INK~Dr~~ 186 (742)
|+|....-..+ ...+|....+ .++|++++.||+|...
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 99998754333 2334444433 4689999999999754
No 194
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.29 E-value=4.3e-11 Score=116.08 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=76.2
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecc-eEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~-~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
+|+++|..++|||+++.+.-.|...-++. .|+... ...+..+ .+.++|+||||+..|.......++.+|+
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIFVEKYD-------PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQG 75 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccC-------CcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCE
Confidence 68999999999999887765543222221 122111 2234444 4567899999999999999999999999
Q ss_pred EEEEEeCCCCCcccH-HHHHHHHH----HcCCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT-~~v~~~a~----~~~ip~il~INK~Dr~~ 186 (742)
+|+|+|.......+. ...+.... ..++|++++.||+|...
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 76 FVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 999999876433222 22333332 25689999999999753
No 195
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.28 E-value=2.4e-11 Score=118.42 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=78.0
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|+.++|||+++.++..|.....+... ....|+. ..+...+..++++||||+.++...+...++.+|++++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRV--LPEITIP---ADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICL 76 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCc--ccceEee---eeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEE
Confidence 6899999999999988887665422111100 0011211 1222356889999999999888888888999999999
Q ss_pred EEeCCCCCcccHH-HHH-HHHHH--cCCCeEEEEecccCCC
Q 004615 150 LFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 150 VVDa~~Gv~~qT~-~v~-~~a~~--~~ip~il~INK~Dr~~ 186 (742)
|+|+...-..+.. ..| ..++. .++|++++.||+|+..
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 9999876555542 234 33332 3789999999999865
No 196
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.28 E-value=3.2e-11 Score=133.65 Aligned_cols=112 Identities=14% Similarity=0.218 Sum_probs=81.7
Q ss_pred ccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEec-CeEEEEEcCCCccC-------cHHHHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVD-------FTLEVE 138 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~-~~~inlIDTPGh~D-------F~~ev~ 138 (742)
+..|+++|.+++||||++..+.... .+.|+ .+.|+......+.+. +..|.|+||||... +..+..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~y------pfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fL 231 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANY------HFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFL 231 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccC------CcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHH
Confidence 3589999999999999998886543 34444 467887777777787 78999999999754 234556
Q ss_pred HHHHhhceEEEEEeCCCC--Ccc--cHHHHHHHHHH-----cCCCeEEEEecccCC
Q 004615 139 RALRVLDGAICLFDSVAG--VEP--QSETVWRQADK-----YGVPRICFVNKMDRL 185 (742)
Q Consensus 139 ~al~~~DgailVVDa~~G--v~~--qT~~v~~~a~~-----~~ip~il~INK~Dr~ 185 (742)
+.+..+|++|+|||+... ..+ +-+.+.+.+.. .++|.|+++||+|+.
T Consensus 232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 667779999999998642 122 22333344443 378999999999963
No 197
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.28 E-value=2.8e-11 Score=118.01 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=80.2
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
+.+|+++|.+++|||+++.++..++....+ ...+++......+.+++ ..++|+||||+.+|.......++.+|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~-----~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad 77 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSF-----ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 77 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCccc-----ccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCC
Confidence 578999999999999988877654321111 12222333333445554 57899999999999988888899999
Q ss_pred eEEEEEeCCCCCcccHHHHH-HHHHH---cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~v~-~~a~~---~~ip~il~INK~Dr~~ 186 (742)
++|+|+|+.++..-+...-| ....+ .++|++++.||+|+..
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 78 GIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred EEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 99999999875443332223 33332 4689999999999864
No 198
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.28 E-value=2.9e-11 Score=135.56 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=83.1
Q ss_pred CccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC-------cHHHHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-------FTLEVE 138 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D-------F~~ev~ 138 (742)
.+..|+++|.+++||||++..+.... .+.|+ .+.|+......+.+++..|.|+||||..+ ...+..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIady------pfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fL 231 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADY------PFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFL 231 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCcccccc------CcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHH
Confidence 45789999999999999998886543 34454 57888888888889999999999999753 223456
Q ss_pred HHHHhhceEEEEEeCCC---CCcc--cHHHHHHHH--------------HHcCCCeEEEEecccCCC
Q 004615 139 RALRVLDGAICLFDSVA---GVEP--QSETVWRQA--------------DKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 139 ~al~~~DgailVVDa~~---Gv~~--qT~~v~~~a--------------~~~~ip~il~INK~Dr~~ 186 (742)
+.+..+|++|+|||+.. +-.+ +-..+.+.+ ...+.|+|+++||+|...
T Consensus 232 rhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 232 RHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred HHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 67778999999999974 2111 112222222 124689999999999753
No 199
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.27 E-value=3.1e-11 Score=115.90 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=78.2
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|..++|||+++.++..+.....+.+.. -......+.++ .+.++++||||+.++.......++.+|++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 74 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTI------EDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGF 74 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCCh------hHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEE
Confidence 58999999999999887775544222222211 12223334444 47899999999999999999999999999
Q ss_pred EEEEeCCCCCc-ccHHHHHHHHHH----cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVE-PQSETVWRQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~-~qT~~v~~~a~~----~~ip~il~INK~Dr~~ 186 (742)
++|+|....-. .+...+|..... .++|+++++||+|+..
T Consensus 75 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 75 ILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 99999876422 123334444432 4799999999999764
No 200
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.27 E-value=1.6e-11 Score=142.34 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=81.1
Q ss_pred eecccCcccccceeccCCc-cCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHH-----HHHH---HHhhc
Q 004615 75 AMAAEGRNYKIGEVHEGTA-TMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE-----VERA---LRVLD 145 (742)
Q Consensus 75 Gh~~~Gk~~~~g~v~~g~~-~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~e-----v~~a---l~~~D 145 (742)
|.+++|||+.+.++...+. +.+ ..|+|++.....+.++++.++++||||+.+|... +.+. .+.+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n------~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGN------WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecC------CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCC
Confidence 7889999999988865443 233 3799999998999999999999999999888532 3332 23689
Q ss_pred eEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 146 GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
++++|+|+... .+......++.+.++|+++++||+|..
T Consensus 75 vvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 75 LVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred EEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 99999999873 334555677788899999999999974
No 201
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.27 E-value=3.9e-11 Score=115.88 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=75.8
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
.+|+++|.+++|||+++.+.-.+....++.+.-. ......+..++ ..+.|+||||+.+|.......++.+|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 75 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE------DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQG 75 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh------hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCE
Confidence 3799999999999998887766543333222110 11112233344 567889999999998888888999999
Q ss_pred EEEEEeCCCCCcccH-HHHHHHHHH----cCCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT-~~v~~~a~~----~~ip~il~INK~Dr~~ 186 (742)
+++|+|....-.-+. ..++..+.+ .++|++++.||+|...
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 76 FVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999876422222 222333332 3689999999999753
No 202
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.27 E-value=6.6e-11 Score=120.84 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=85.8
Q ss_pred CCCccEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC----------
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD---------- 132 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D---------- 132 (742)
.++.-+|+++|.+|.||+++.+..-.-. .+++. -..|.......+.-+.+++.|.||||.+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K------~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~ 142 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRK------VHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM 142 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccccccc------ccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH
Confidence 3678899999999999999766542211 22222 23466666777777899999999999532
Q ss_pred --cHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHc-CCCeEEEEecccCCC
Q 004615 133 --FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKMDRLG 186 (742)
Q Consensus 133 --F~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~-~ip~il~INK~Dr~~ 186 (742)
|......|+..+|.+++|+|+..--..-.-++++.+.++ ++|-|+++||+|...
T Consensus 143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 143 MSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred HHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 445778999999999999999873223334577776654 689999999999875
No 203
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.27 E-value=3.5e-11 Score=116.53 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=76.5
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEE--ecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~--~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|++.+|||+++.++..+..... ....++++.....+. .....++|+||||+.+|.......++.+|++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSK-----YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGV 76 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-----CCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEE
Confidence 689999999999998887765432211 112222222222333 3457889999999999988788888999999
Q ss_pred EEEEeCCCCCcccHHHHH-HHHHH--------cCCCeEEEEecccCC
Q 004615 148 ICLFDSVAGVEPQSETVW-RQADK--------YGVPRICFVNKMDRL 185 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~-~~a~~--------~~ip~il~INK~Dr~ 185 (742)
|+|+|..+....+...-| +.+.+ .++|++++.||.|..
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 77 LLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 999999875333333333 22322 358899999999975
No 204
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.26 E-value=2.3e-11 Score=118.17 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=74.4
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC-cHHHHHHHHHhhceEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-FTLEVERALRVLDGAI 148 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D-F~~ev~~al~~~Dgai 148 (742)
+|+++|...+|||+++-+.-.+....++.+.-. +.......+.++...++|+||||+.. |.....+.++.+|++|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 76 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE----SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFV 76 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH----HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEE
Confidence 489999999999998866544332222222110 12222233333455789999999985 5667888999999999
Q ss_pred EEEeCCCCCcccHHHHH-HHHH-----HcCCCeEEEEecccCC
Q 004615 149 CLFDSVAGVEPQSETVW-RQAD-----KYGVPRICFVNKMDRL 185 (742)
Q Consensus 149 lVVDa~~Gv~~qT~~v~-~~a~-----~~~ip~il~INK~Dr~ 185 (742)
+|+|+.....-+....| ..+. ..++|+|++.||+|+.
T Consensus 77 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 77 LVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 99999886443332223 2222 2379999999999964
No 205
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.26 E-value=3.8e-11 Score=116.72 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=78.6
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
+.+|+++|..++|||+++.++..++-...+ ...+++......+.+++ ..++|+||||+.+|.......++.+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 76 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESY-----ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 76 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCC
Confidence 358999999999999998877654321111 12233333333444444 57899999999999988888999999
Q ss_pred eEEEEEeCCCCCcccH-HHHHHHHHH---cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT-~~v~~~a~~---~~ip~il~INK~Dr~~ 186 (742)
++|+|+|+.+.-.-+. ...+....+ .++|++++.||+|+..
T Consensus 77 ~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 77 GIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred EEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 9999999987432222 222233333 4689999999999754
No 206
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.26 E-value=3.8e-11 Score=130.88 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=80.6
Q ss_pred CCccEEEEEeecccCcccccceeccCCc-cCCCcHhHHhhcceEecceEEEEe-cCeEEEEEcCCCcc-CcHH-------
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTA-TMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV-DFTL------- 135 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~-~~D~~~~E~erGITi~s~~~~~~~-~~~~inlIDTPGh~-DF~~------- 135 (742)
.....|+++|++++|||+++..+...+. +.|. -+.|++.....+.+ ++..+.|+||||.. +...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~------~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~ 260 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQ------LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFR 260 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccC------CccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHH
Confidence 3557899999999999999888765432 2232 35677777777777 57899999999983 2111
Q ss_pred HHHHHHHhhceEEEEEeCCCCCcccHH----HHHHHHHHcCCCeEEEEecccCCC
Q 004615 136 EVERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 136 ev~~al~~~DgailVVDa~~Gv~~qT~----~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
.+...++.+|++|+|+|+......+.. .+++.+...++|+|+++||+|+..
T Consensus 261 ~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 261 ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 122346789999999999876443322 233333334789999999999753
No 207
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.25 E-value=2.9e-11 Score=121.58 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=74.1
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcH----HH----HHH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT----LE----VER 139 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~----~e----v~~ 139 (742)
+|+++|..++|||+++.+.-.++..-.+.+ .++.......+.+++ +.++|+||||+.+|. .+ ...
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~p-----t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~ 76 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIP-----TEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFR 76 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCC-----ccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHh
Confidence 689999999999999887655432211211 122222223445666 678899999987662 22 446
Q ss_pred HHHhhceEEEEEeCCCCCcccHHHHH-HHHH------HcCCCeEEEEecccCCC
Q 004615 140 ALRVLDGAICLFDSVAGVEPQSETVW-RQAD------KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 140 al~~~DgailVVDa~~Gv~~qT~~v~-~~a~------~~~ip~il~INK~Dr~~ 186 (742)
+++.+|++|+|+|+...-.-+....| ++.. ..++|++++.||+|+..
T Consensus 77 ~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 77 GLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 68899999999999875433322223 3333 25689999999999854
No 208
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.25 E-value=5.2e-11 Score=120.02 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=77.3
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec---CeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~---~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
+|+++|...+|||+++.++-.+....++. ..+..+.....+.++ .+.++|+||||+..|.......++.+|+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~-----~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~ 76 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYK-----ATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVG 76 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC-----CceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCE
Confidence 68999999999999988766553222221 122222223334444 5678999999999998888888999999
Q ss_pred EEEEEeCCCCCcccHHHHHH-HHH-------HcCCCeEEEEecccCC
Q 004615 147 AICLFDSVAGVEPQSETVWR-QAD-------KYGVPRICFVNKMDRL 185 (742)
Q Consensus 147 ailVVDa~~Gv~~qT~~v~~-~a~-------~~~ip~il~INK~Dr~ 185 (742)
+|+|+|...--.-+....|. .+. ..++|+|++.||+|+.
T Consensus 77 ~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 77 AIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 99999987643333333332 221 2568999999999985
No 209
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.25 E-value=6.2e-11 Score=115.03 Aligned_cols=114 Identities=13% Similarity=0.115 Sum_probs=79.9
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
..+|+++|.+++|||+++.++..++....+ ...++.......+..++ ..++|+||||+..|.......++.+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~ 77 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-----KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAV 77 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCC
Confidence 458999999999999998887654422222 12334444444555555 57899999999998888888899999
Q ss_pred eEEEEEeCCCCCcccHHH-HHHHHHH---cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~-v~~~a~~---~~ip~il~INK~Dr~~ 186 (742)
++|+|+|+.+.-..+... .+..+.+ .++|++++.||.|...
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 78 GALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 999999998643332222 2233322 3589999999999653
No 210
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.25 E-value=4.7e-11 Score=114.92 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=77.0
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe--cCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|...+|||+.+.++-.+....+. .+.++.......+.+ ....++++||||+..|.......++.+|++
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 76 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH-----ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGA 76 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc-----CCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEE
Confidence 7999999999999988776554322111 112222222223333 345789999999999888888888999999
Q ss_pred EEEEeCCCCCcccHHHHHHH----HHHcCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSETVWRQ----ADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~~~----a~~~~ip~il~INK~Dr~~ 186 (742)
++|+|..++-..+...-|.. ....++|+++++||+|...
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 77 ILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999987654444333422 2223689999999999763
No 211
>PLN03118 Rab family protein; Provisional
Probab=99.24 E-value=3.7e-11 Score=122.10 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=80.4
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
..+|+++|+.++|||+++..+..+. +.+ ....++.......+.+++ +.++|+||||+.+|.......++.+|
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~-~~~-----~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS-VED-----LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCC-----cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3689999999999999887765543 111 122233333334455543 68899999999999998899999999
Q ss_pred eEEEEEeCCCCCcccHH-HHHHHHH-----HcCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSE-TVWRQAD-----KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~-~v~~~a~-----~~~ip~il~INK~Dr~~ 186 (742)
++|+|+|+......+.. ..|.... ..++|.+++.||+|+..
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999875433333 2353322 24678999999999754
No 212
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.24 E-value=3.2e-11 Score=117.66 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=76.7
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe--cCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|...+|||+++.++-.+.....+. ..+.+......+.+ +...+.++||||+.+|.......++.+|++
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYV-----ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCA 76 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC-----CceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEE
Confidence 68999999999999988765443211111 11112222233333 457889999999999887777788899999
Q ss_pred EEEEeCCCCCcccHHHHH-HHHHHc--CCCeEEEEecccCC
Q 004615 148 ICLFDSVAGVEPQSETVW-RQADKY--GVPRICFVNKMDRL 185 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~-~~a~~~--~ip~il~INK~Dr~ 185 (742)
|+|+|...+..-+...-| +.+.+. ++|++++.||+|+.
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 77 IIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 999999876554443333 333332 69999999999975
No 213
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.24 E-value=3.9e-11 Score=119.86 Aligned_cols=112 Identities=14% Similarity=0.121 Sum_probs=75.1
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
.|+++|..++|||+++.++..++...+. ....+.+......+.++ ...++|+||||+..|.......++.+|++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 77 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN----FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHAL 77 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC----cCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEE
Confidence 5899999999999998776554422211 00111122222223333 46889999999999988888888999999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHH---cCCCeEEEEecccCC
Q 004615 148 ICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRL 185 (742)
Q Consensus 148 ilVVDa~~Gv~~qT-~~v~~~a~~---~~ip~il~INK~Dr~ 185 (742)
|+|+|+...-..+. +..+..+.+ .++|++++.||+|..
T Consensus 78 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 78 LLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 99999987432221 222333333 368999999999975
No 214
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.24 E-value=5.6e-11 Score=115.64 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=78.1
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
-+|+++|+.++|||+++.++..+.-..++.+ .-|.+.....+.+.-....++|+||||+..|.......++.+|++|
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH---TIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCc---ccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4799999999999998888766532222111 1122222222222223467899999999999998889999999999
Q ss_pred EEEeCCCCCcccHHHHH-HHHHH---cCCCeEEEEecccCCC
Q 004615 149 CLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 149 lVVDa~~Gv~~qT~~v~-~~a~~---~~ip~il~INK~Dr~~ 186 (742)
+|+|....-.-+...-| ..... .+.|++++.||+|+..
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999875433333333 33322 4578899999999754
No 215
>PRK11058 GTPase HflX; Provisional
Probab=99.24 E-value=5.9e-11 Score=132.31 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=81.1
Q ss_pred CccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCe-EEEEEcCCCccCc-H-------HH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVDF-T-------LE 136 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~-~inlIDTPGh~DF-~-------~e 136 (742)
..+.|+++|.+|+||||++..+...+ .+.|. -|.|++.....+.|.+. .+.|+||||+... . ..
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~------~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~ 269 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQ------LFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKA 269 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccC------CCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHH
Confidence 44789999999999999998875433 12232 46777777777877664 8999999998542 1 11
Q ss_pred HHHHHHhhceEEEEEeCCCCCcccHH----HHHHHHHHcCCCeEEEEecccCCC
Q 004615 137 VERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~Gv~~qT~----~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
+...++.+|++|+|+|+.+....+.. .++..+...++|+|+++||+|+..
T Consensus 270 tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 270 TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 33445789999999999885433322 334444445799999999999753
No 216
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.24 E-value=7.2e-11 Score=115.22 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=78.7
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
...+|+++|..++|||+++.++-.+.... +....++.......+.+++ ..++|+||||+..|.......++.+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~ 78 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDT-----QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGS 78 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCc-----CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCC
Confidence 45789999999999999888775543211 1112233332233444544 5677899999999998888899999
Q ss_pred ceEEEEEeCCCCCcccHHHHHHH-HH-------HcCCCeEEEEecccCC
Q 004615 145 DGAICLFDSVAGVEPQSETVWRQ-AD-------KYGVPRICFVNKMDRL 185 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~~~-a~-------~~~ip~il~INK~Dr~ 185 (742)
|++|+|+|....-..+...-|.. .. ..++|++++.||+|+.
T Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 79 DCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred CEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 99999999887543333333322 21 2468999999999975
No 217
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.23 E-value=4.2e-11 Score=117.29 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=73.8
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEe-cceEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITIT-SAATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~-s~~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
+|+++|+..+|||+++-....+.-...+.+ |+. .-...+.++ .+.++|+||||+.+|.......++.+|+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~-------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 74 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVP-------TVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 74 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-------ceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCE
Confidence 689999999999998866554432111111 111 111223333 4668899999999998777778889999
Q ss_pred EEEEEeCCCCCcccHH-HHH-HHHH--HcCCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQSE-TVW-RQAD--KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT~-~v~-~~a~--~~~ip~il~INK~Dr~~ 186 (742)
+|+|+|..+.-.-+.. ..| +... ..++|++++.||+|+..
T Consensus 75 ~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 75 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 9999999875332222 122 2222 35899999999999754
No 218
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.22 E-value=8.8e-11 Score=118.20 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=79.3
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
...+|+++|..++|||+++.++..+.....+ ...+.+......+.+.+ ..++|+||||+..|.......++.+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a 79 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSY-----ITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGT 79 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCc-----CccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCC
Confidence 3578999999999999998877654311111 11222223334445544 5788999999999998889999999
Q ss_pred ceEEEEEeCCCCCcccHHHHH-HHHHH--cCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~-~~a~~--~~ip~il~INK~Dr~~ 186 (742)
|++|+|+|+.+.-.-+...-| ..... ..+|++++.||+|+..
T Consensus 80 ~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 80 HGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 999999999875333322223 33322 3588999999999753
No 219
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.21 E-value=3.6e-11 Score=112.76 Aligned_cols=108 Identities=21% Similarity=0.238 Sum_probs=80.6
Q ss_pred EEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec----CeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 73 VFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----KHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 73 iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~----~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
++|++.+|||+++..+..+... +.++..|. ......... +..++++||||+.++.......++.+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~------~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV------PEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC------Ccccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEE
Confidence 5899999999998887654432 11122333 333333333 788999999999999888889999999999
Q ss_pred EEEeCCCCCcccHHHHH-----HHHHHcCCCeEEEEecccCCCC
Q 004615 149 CLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 149 lVVDa~~Gv~~qT~~v~-----~~a~~~~ip~il~INK~Dr~~~ 187 (742)
+|+|+..+...+....| ......++|.++++||+|+...
T Consensus 74 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 74 LVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 99999987666655544 4455678999999999998654
No 220
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.20 E-value=1.5e-10 Score=115.52 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=75.3
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
.|+++|..++|||+++.++..|....++.+.- | ..-...+..++ ..++|+||||+.+|.......++.+|++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~---~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI---E---DSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGF 74 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch---H---hhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEE
Confidence 38899999999999987765544322222211 0 01112233444 4588999999999998888999999999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHH------cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQS-ETVWRQADK------YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT-~~v~~~a~~------~~ip~il~INK~Dr~~ 186 (742)
|+|+|....-.-.. ...+..+.. .++|+|++.||+|+..
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 75 ILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 99999977533232 223333322 4689999999999753
No 221
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.20 E-value=5.7e-11 Score=129.15 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=95.2
Q ss_pred cEEEEEeecccCcccccceeccC--CccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHH--------HH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEG--TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE--------VE 138 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g--~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~e--------v~ 138 (742)
-+++|+|.||+|||++++.+-.. .-|+|- .|.|.+.--..+..+++.+.|+||.|..+=... ..
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI------~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDI------AGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCC------CCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 57999999999999999887543 478887 899999999999999999999999997643322 34
Q ss_pred HHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCC
Q 004615 139 RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 188 (742)
Q Consensus 139 ~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~ 188 (742)
.++..||.+++|+|+.++...+...++. +...+.|+++++||.|+....
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKI 340 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccc
Confidence 5677899999999999987788777777 667789999999999987643
No 222
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.20 E-value=8e-11 Score=113.97 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=74.0
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|.+++|||+++.+...|...-.+.+... ......+..++ ..++|+||||+..|..-....++.+|++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ 76 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE------DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGF 76 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh------heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEE
Confidence 799999999999998866655532222211110 01112233333 4678899999999988888888999999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHH----cCCCeEEEEecccCC
Q 004615 148 ICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRL 185 (742)
Q Consensus 148 ilVVDa~~Gv~~qT-~~v~~~a~~----~~ip~il~INK~Dr~ 185 (742)
|+|+|.++.-.-+. ..++....+ .++|++++.||+|+.
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 77 IVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 99999987432222 222333332 479999999999974
No 223
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.19 E-value=2.8e-10 Score=112.09 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=77.6
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecce-EEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYWNK--HRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~-~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
.+|+++|...+|||+++-+...|.-.-++.+ |+.... ..+.+++ +.++|+||||+.+|..-....++.+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~p-------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~ 74 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVP-------TVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 74 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-------ceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCC
Confidence 4799999999999998877765542222222 222211 2344555 77899999999999877777889999
Q ss_pred eEEEEEeCCCCCcccHH-HHHH-HHHH--cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSE-TVWR-QADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~-~v~~-~a~~--~~ip~il~INK~Dr~~ 186 (742)
++|+|+|....-.-+.. ..|. .... .++|+|++.||+|+..
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 75 VFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 99999999875433332 2343 3332 3689999999999754
No 224
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.19 E-value=1.7e-10 Score=113.70 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=77.6
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec------------CeEEEEEcCCCccCcHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------KHRINIIDTPGHVDFTL 135 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~------------~~~inlIDTPGh~DF~~ 135 (742)
..+|+++|..++|||+++.++..+.....+. ..++++.....+.+. ...+.|+||||+..|..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 78 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFI-----TTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRS 78 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCC-----CccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHH
Confidence 4689999999999999987775543221111 112222222233332 37789999999999988
Q ss_pred HHHHHHHhhceEEEEEeCCCCCcccHHHHH-HHHHH----cCCCeEEEEecccCCC
Q 004615 136 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 136 ev~~al~~~DgailVVDa~~Gv~~qT~~v~-~~a~~----~~ip~il~INK~Dr~~ 186 (742)
.....++.+|++|+|+|+.+.-.-+...-| ..... .+.|++++.||+|+..
T Consensus 79 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 79 LTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 889999999999999999864333332222 23332 3678999999999753
No 225
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.19 E-value=9.7e-11 Score=118.06 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=80.1
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
.|+++|...+|||+.+-+...|...- +..-.+++......+.+++ ..++|+||+|+..|.......++.+|++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~-----~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~i 76 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE-----ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 76 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC-----cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEE
Confidence 48899999999999887765543211 1112233333334556665 7789999999999999889999999999
Q ss_pred EEEEeCCCCCcccHHHHHHH-HHH---cCCCeEEEEecccCC
Q 004615 148 ICLFDSVAGVEPQSETVWRQ-ADK---YGVPRICFVNKMDRL 185 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~~~-a~~---~~ip~il~INK~Dr~ 185 (742)
|+|+|.+..-.-+...-|.. ..+ .++|+|++.||+|+.
T Consensus 77 IlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 77 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999987544444433433 222 468999999999975
No 226
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.19 E-value=8e-11 Score=115.62 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=76.7
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecc-eEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~-~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
-+|+++|..++|||+++-+.-.|...-.+. -|+... ...+.+++ ..++|+||||..+|..-....++.+|
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~-------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d 75 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHD-------PTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGE 75 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcC-------CcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCC
Confidence 368999999999999876654443211111 122111 12334444 67899999999999988889999999
Q ss_pred eEEEEEeCCCCCcccHHHHH-HHHH----HcCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~v~-~~a~----~~~ip~il~INK~Dr~~ 186 (742)
++|+|+|..+.-..++..-| .... ..++|++++.||+|+..
T Consensus 76 ~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 76 GFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred EEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 99999999876555543322 2222 35789999999999753
No 227
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.19 E-value=2.4e-10 Score=111.73 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=96.5
Q ss_pred CCccEEEEEeecccCcccccceeccCC---ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc----------C
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT---ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----------D 132 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~---~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~----------D 132 (742)
+..+-|+++|+.|.|||+.+..+...+ .+.- .-|.|....... |++. +.|+|-||+- .
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSk------tPGrTq~iNff~--~~~~-~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSK------TPGRTQLINFFE--VDDE-LRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCC------CCCccceeEEEE--ecCc-EEEEeCCCcccccCCHHHHHH
Confidence 456899999999999999988876533 2332 257777655443 3433 8999999962 2
Q ss_pred cHHHHHHHHH---hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC-ChHHHHHHHHHHhCC
Q 004615 133 FTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 202 (742)
Q Consensus 133 F~~ev~~al~---~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~-~~~~~~~~i~~~l~~ 202 (742)
+...+...|+ ...+++++||+..++...++++++.+...++|.++++||+|+... +..+.+..+++.++.
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 2344455553 368999999999999999999999999999999999999999874 355566666665544
No 228
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.1e-11 Score=131.52 Aligned_cols=119 Identities=29% Similarity=0.338 Sum_probs=104.5
Q ss_pred ccEEEEEeecccCcccccce----ecc---------------C----CccCCCcHhHHhhcceEecceEEEEecCeEEEE
Q 004615 68 RRQFSVFAMAAEGRNYKIGE----VHE---------------G----TATMDWMEQEQERGITITSAATTTYWNKHRINI 124 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~----v~~---------------g----~~~~D~~~~E~erGITi~s~~~~~~~~~~~inl 124 (742)
.+||+++||+++||++..|. ++. | .+++|....|++|||||+.+...+....+.+++
T Consensus 7 ~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~~i~i 86 (391)
T KOG0052|consen 7 HINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTI 86 (391)
T ss_pred ccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeEEEEE
Confidence 48999999999999987663 322 1 388999999999999999999999989999999
Q ss_pred EcCCCccCcHHHHHHHHHhhceEEEEEeCCCC-------CcccHHHHHHHHHHcCCCe-EEEEecccCCC
Q 004615 125 IDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLG 186 (742)
Q Consensus 125 IDTPGh~DF~~ev~~al~~~DgailVVDa~~G-------v~~qT~~v~~~a~~~~ip~-il~INK~Dr~~ 186 (742)
||.|||.||...|..+.+++|.|+++|.+.-| ...||+++...+..+++.. ++.+||||...
T Consensus 87 id~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 87 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred ecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 99999999999999999999999999998333 4689999999999998655 78999999764
No 229
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.16 E-value=1.3e-10 Score=113.13 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=74.7
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe--cCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|..++|||+++..+..+.....+. ..........+.+ ..+.+.++||||+.+|.......++.+|++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~ 75 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYV------PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVF 75 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC------CceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEE
Confidence 68999999999999887776543211111 1112222223333 356799999999998866666667889999
Q ss_pred EEEEeCCCCCcccH-HHHH-HHHHH--cCCCeEEEEecccCCCC
Q 004615 148 ICLFDSVAGVEPQS-ETVW-RQADK--YGVPRICFVNKMDRLGA 187 (742)
Q Consensus 148 ilVVDa~~Gv~~qT-~~v~-~~a~~--~~ip~il~INK~Dr~~~ 187 (742)
++|+|+.+....+. ...| ..... .++|++++.||+|+...
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 76 LICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 99999987433222 1223 23333 35999999999998754
No 230
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.16 E-value=2.3e-10 Score=129.51 Aligned_cols=109 Identities=20% Similarity=0.300 Sum_probs=87.6
Q ss_pred cEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH-----HHHHH-HH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT-----LEVER-AL 141 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~-----~ev~~-al 141 (742)
..||++|++|.|||+..+.+...+ .+-+| -|.|+.-....+.++++.|.++|.||--+++ ..+.| .+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNw------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l 77 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNW------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFL 77 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCC------CCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence 459999999999999999887765 67777 7999999999999999999999999976653 22222 22
Q ss_pred H--hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 142 R--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 142 ~--~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
. ..|.+|.||||+. -.+...+--|..+.|+|+|+++|++|..
T Consensus 78 l~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 78 LEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred hcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 2 4699999999975 2334445568889999999999999954
No 231
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.15 E-value=1.5e-10 Score=112.02 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=75.2
Q ss_pred EEEEEeecccCcccccceeccC-CccCCCcHhHHhhcceEecceEEEEe---cCeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEG-TATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g-~~~~D~~~~E~erGITi~s~~~~~~~---~~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
+|+++|...+|||+++.++..+ ..+ +.+....+-.+.....+.+ ....++++||||+..|...+...++.+|
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 77 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVF----PKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPS 77 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc----CccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCC
Confidence 6899999999999998776542 111 1121111212211122222 3478999999999988888889999999
Q ss_pred eEEEEEeCCCCCcccH-HHHHHHHHH--cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQS-ETVWRQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT-~~v~~~a~~--~~ip~il~INK~Dr~~ 186 (742)
++++|+|....-.... +.++.+... .++|.++++||+|...
T Consensus 78 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 78 VFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 9999999876422222 223333333 3689999999999753
No 232
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.15 E-value=4.7e-10 Score=116.64 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=74.8
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEe-cceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITIT-SAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~-s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
+|+++|..++|||+++.++-.|.-...+.+ |+. .....+..++ +.++|+||||+.+|.......++.+|+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~p-------Ti~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~ 74 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTP-------TIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDV 74 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCC-------ChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 589999999999998887755432111111 221 1122333343 788999999999998777777889999
Q ss_pred EEEEEeCCCCCcccH-HHHHHHHHH------------cCCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQS-ETVWRQADK------------YGVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT-~~v~~~a~~------------~~ip~il~INK~Dr~~ 186 (742)
+|+|+|....-.-+. ..+++++.+ .++|+|++.||+|+..
T Consensus 75 iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 75 FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 999999986432222 223334332 3689999999999753
No 233
>PLN03110 Rab GTPase; Provisional
Probab=99.15 E-value=1.7e-10 Score=117.78 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=81.2
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
...+|+++|+..+|||+++.++..+....++ ...+.+......+.+++ ..++|+||||+..|.......++.+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~-----~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 85 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-----KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCC
Confidence 4569999999999999998877654432222 12233333334444544 6889999999999998888899999
Q ss_pred ceEEEEEeCCCCCcccHHH-HHHHHHH---cCCCeEEEEecccCC
Q 004615 145 DGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRL 185 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~-v~~~a~~---~~ip~il~INK~Dr~ 185 (742)
|++|+|+|..+.-.-+... .++.+.. .++|++++.||+|+.
T Consensus 86 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 86 VGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 9999999997643333322 3333333 479999999999974
No 234
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.14 E-value=4.6e-10 Score=114.55 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=79.6
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|...+|||+++-+.-.+.. .++ --|+........|+.+.++|+||||+..|.......++.+|++|+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f-~~~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il 73 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF-KDT-------VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVIL 73 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCC-------CCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence 689999999999998887655432 111 124444444556678899999999999998888888999999999
Q ss_pred EEeCCCCCcccHH-HHHHHHHH---cCCCeEEEEecccCCC
Q 004615 150 LFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 150 VVDa~~Gv~~qT~-~v~~~a~~---~~ip~il~INK~Dr~~ 186 (742)
|+|...--.-+.. ..|..+.+ .++|+|++.||+|+..
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999874322222 23333332 4688999999999864
No 235
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.13 E-value=2e-10 Score=115.55 Aligned_cols=105 Identities=19% Similarity=0.158 Sum_probs=77.1
Q ss_pred EeecccCcccccceeccCCccCCCcHhHHhhcceEecce--EEEEe--cCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 74 FAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAA--TTTYW--NKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 74 iGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~--~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|...+|||+++-+.-.|.... +...|+.... ..+.+ +...++|+||||+.+|.......++.+|++|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~-------~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~il 73 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK-------KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAII 73 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC-------CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEE
Confidence 5888999999887765443211 1233443333 23333 35789999999999999988999999999999
Q ss_pred EEeCCCCCcccHHHHHHH-HHH--cCCCeEEEEecccCC
Q 004615 150 LFDSVAGVEPQSETVWRQ-ADK--YGVPRICFVNKMDRL 185 (742)
Q Consensus 150 VVDa~~Gv~~qT~~v~~~-a~~--~~ip~il~INK~Dr~ 185 (742)
|+|.+.....+....|.. +.+ .++|+|+|.||+|+.
T Consensus 74 V~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 74 MFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999998766665555544 444 578999999999974
No 236
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.13 E-value=3.8e-10 Score=115.00 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=76.6
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec---CeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~---~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
.|+++|..++|||+++.++..+....++ ..-++.+.....+.+. ...++|+||||+..|..-....++.+|+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~-----~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ 76 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSY-----KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHA 76 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC-----CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCE
Confidence 5899999999999998887654322222 1223333333344443 4789999999999988888888999999
Q ss_pred EEEEEeCCCCCcccH-HHHHHHHHHc------CCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQS-ETVWRQADKY------GVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT-~~v~~~a~~~------~ip~il~INK~Dr~~ 186 (742)
+|+|+|...--.-+. +.++..+.+. +.|++++.||+|+..
T Consensus 77 iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 77 VFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 999999886422222 2233344332 356789999999753
No 237
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.13 E-value=5.8e-10 Score=107.58 Aligned_cols=110 Identities=19% Similarity=0.227 Sum_probs=76.6
Q ss_pred EEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc----------HHHHHHH
Q 004615 71 FSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF----------TLEVERA 140 (742)
Q Consensus 71 i~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF----------~~ev~~a 140 (742)
|+++|+..+|||+++..+..+...... +...|.|.... .+.++ ..+.++|||||.+. ...+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~---~~~~~~t~~~~--~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~ 75 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLART---SKTPGKTQLIN--FFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEY 75 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeee---cCCCCcceeEE--EEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHH
Confidence 789999999999998877643222111 12233443322 23333 38999999998663 2222233
Q ss_pred HH---hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 141 LR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 141 l~---~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
++ .++++++|+|...........+++.+...+.|+++++||+|...
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 33 45789999999988777878888899999999999999999754
No 238
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.13 E-value=5.1e-10 Score=111.11 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=75.0
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecce-EEEEec---CeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYWN---KHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~-~~~~~~---~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
+|+++|..++|||+++.++..+....++. -|+.... ..+... ...+.|+||||+.+|.......++.+|
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~-------~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 74 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYV-------PTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVD 74 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCC-------CeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCC
Confidence 68999999999999988876544222221 1222211 122222 357899999999999877777888999
Q ss_pred eEEEEEeCCCCCcccHH-HHHHHHH---HcCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSE-TVWRQAD---KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~-~v~~~a~---~~~ip~il~INK~Dr~~ 186 (742)
++|+|+|....-.-+.. ..|.... ..++|+|++.||.|+..
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 75 VLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 99999999874333332 2343222 24789999999999753
No 239
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.12 E-value=2.5e-10 Score=115.32 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=78.6
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEE----ecCeEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY----WNKHRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~----~~~~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
++|.++|+.++|||+++..+..+.....+ .|+......+. +++..+.|+|||||.+|.......++.+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~--------~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~ 72 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV--------TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNS 72 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc--------CcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhcc
Confidence 58999999999999988877665311111 11212222222 3478899999999999999999999998
Q ss_pred -ceEEEEEeCCCCCc--ccHHHHHHH----HH--HcCCCeEEEEecccCCCCC
Q 004615 145 -DGAICLFDSVAGVE--PQSETVWRQ----AD--KYGVPRICFVNKMDRLGAN 188 (742)
Q Consensus 145 -DgailVVDa~~Gv~--~qT~~v~~~----a~--~~~ip~il~INK~Dr~~~~ 188 (742)
+++|+|+|+..... ..+...|.. .. ..++|++++.||+|+..+.
T Consensus 73 ~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 73 AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 99999999988631 112222222 11 2489999999999987654
No 240
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.12 E-value=5.3e-10 Score=114.31 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=78.7
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
...+|+++|...+|||+++.+.-.|.....+ +..-|+++.........+...++|+||||+.+|..-....++.+|+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~---~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCcc---CCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 3468999999999999998876544321111 1112223322222222245789999999999998777777899999
Q ss_pred EEEEEeCCCCCcccHHHHH-HHHH--HcCCCeEEEEecccCC
Q 004615 147 AICLFDSVAGVEPQSETVW-RQAD--KYGVPRICFVNKMDRL 185 (742)
Q Consensus 147 ailVVDa~~Gv~~qT~~v~-~~a~--~~~ip~il~INK~Dr~ 185 (742)
+|+|+|....-.-+...-| +.+. ..++|+++|.||+|+.
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 9999999886544443334 2222 2578999999999974
No 241
>PLN03108 Rab family protein; Provisional
Probab=99.10 E-value=7.3e-10 Score=112.52 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=78.7
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
...+|+++|...+|||+++..+..+....++.+ .+........+.+++ ..++|+||||+.+|.......++.+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~-----ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~a 79 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGA 79 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----CccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 346899999999999999888765432222211 122222222344444 5688999999999988888889999
Q ss_pred ceEEEEEeCCCCCcccHHHHH-HHHHH---cCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~-~~a~~---~~ip~il~INK~Dr~~ 186 (742)
|++|+|+|....-..+...-| ..+.+ .++|++++.||+|+..
T Consensus 80 d~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 80 AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 999999999864333332223 22222 3689999999999754
No 242
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.10 E-value=4.7e-10 Score=110.04 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=75.2
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
.++++|...+|||+++.+...+....++.+ .+.+.-...+..+ ...++|+||||+..|..-....++.+|++
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~ 75 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVP------TAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVF 75 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC------ceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEE
Confidence 589999999999998876644432222211 1112212233333 36788999999999877767788899999
Q ss_pred EEEEeCCCCCccc--HHHHHHHHHH--cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQ--SETVWRQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~q--T~~v~~~a~~--~~ip~il~INK~Dr~~ 186 (742)
|+|+|..+--.-+ .+..+.+... .++|++++.||+|+..
T Consensus 76 i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 76 LLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 9999998643322 2334444443 4689999999999753
No 243
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.10 E-value=2.1e-10 Score=113.06 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=86.4
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
++..+|.++|..++|||+.+..+..+... +.. -|+.....++.++++.++++|.+|+..|..-+...++.+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~-------pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~ 83 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETI-------PTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNAD 83 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEE-------EESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTES
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccC-------cccccccceeeeCcEEEEEEeccccccccccceeeccccc
Confidence 45679999999999999988887664311 122 2555666788889999999999999888777778888999
Q ss_pred eEEEEEeCCCCC-cccHHHHHHHHHH----cCCCeEEEEecccCCCC
Q 004615 146 GAICLFDSVAGV-EPQSETVWRQADK----YGVPRICFVNKMDRLGA 187 (742)
Q Consensus 146 gailVVDa~~Gv-~~qT~~v~~~a~~----~~ip~il~INK~Dr~~~ 187 (742)
++|+|||+.+-- ..+....+..+.. .++|++++.||.|...+
T Consensus 84 ~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 84 GIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp EEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred eeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 999999998631 1234444444332 47899999999998764
No 244
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.09 E-value=6.7e-10 Score=108.85 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=75.1
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecc--eEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSA--ATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~--~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
.|+++|...+|||+++.+.-.+...-++. -|+... ...+..++ ..++|+||||+.+|..-....++.+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~-------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 74 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYK-------ATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQ 74 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC-------CceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCC
Confidence 58999999999999888776543222221 233222 23344443 67999999999999888888899999
Q ss_pred eEEEEEeCCCCCcccHHHHH-HHHHHcC----CCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSETVW-RQADKYG----VPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~v~-~~a~~~~----ip~il~INK~Dr~~ 186 (742)
++|+|+|+...-.-+...-| ....+.. .|+|++.||+|+..
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 75 AIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 99999999763222222223 3333332 45789999999743
No 245
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.09 E-value=2.9e-10 Score=113.12 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=77.4
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|+++|...+|||+++.++..+.....+.+ .-|.+.....+.+..+...+.++||||+.+|.......++.+|++|+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iil 78 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKS---TIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLL 78 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCC---ceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEE
Confidence 689999999999999988876543221211 12222222223332234678999999999999899999999999999
Q ss_pred EEeCCCCCcccHHHHH-HHHHH---cCCCeEEEEecccCCC
Q 004615 150 LFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 150 VVDa~~Gv~~qT~~v~-~~a~~---~~ip~il~INK~Dr~~ 186 (742)
|+|....-.-....-| ..... .++|.+++.||.|+..
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 9999864322222223 22332 3578899999999753
No 246
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.09 E-value=7.6e-10 Score=110.41 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=75.8
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecce---EEEEecCeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAA---TTTYWNKHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~---~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
+.|+++|...+|||+++.++..|.....+.+ |+.... +.+......++|+||||+.+|..-....++.+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~-------t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~ 73 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEP-------TVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTD 73 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCC-------cceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCC
Confidence 4799999999999998888766543222211 221111 122223468999999999998766666788999
Q ss_pred eEEEEEeCCCCCcccHH-H-HHHHHHH--cCCCeEEEEecccCCCC
Q 004615 146 GAICLFDSVAGVEPQSE-T-VWRQADK--YGVPRICFVNKMDRLGA 187 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~-~-v~~~a~~--~~ip~il~INK~Dr~~~ 187 (742)
++|+|.|...--.-+.. . .+..+.. .++|++++.||+|+...
T Consensus 74 ~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 74 VIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 99999998764333332 1 2334433 37899999999998653
No 247
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.07 E-value=1.2e-09 Score=109.71 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=86.6
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH-------HHHHHHH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT-------LEVERAL 141 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~-------~ev~~al 141 (742)
+||+++|++++|||+..+.+-..+.. . .....+|.|.........|+++++++|||||..|+. .++.+.+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~-~--~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVF-E--SKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcc-c--cccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 58999999999999988777543211 1 111246889988888999999999999999988763 2334333
Q ss_pred H----hhceEEEEEeCCCCCcccHHHHHHHHHHc-C----CCeEEEEecccCCCC
Q 004615 142 R----VLDGAICLFDSVAGVEPQSETVWRQADKY-G----VPRICFVNKMDRLGA 187 (742)
Q Consensus 142 ~----~~DgailVVDa~~Gv~~qT~~v~~~a~~~-~----ip~il~INK~Dr~~~ 187 (742)
. ..|++|+|+|+.. .....+.+++.+.+. | .+.|+++|+.|....
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence 3 3689999999987 777788888777663 3 577899999997653
No 248
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.07 E-value=6.9e-10 Score=108.75 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=73.5
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecc-eEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~-~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
++|+++|...+|||+++.++..+...-.+.+ |+... ...+.++ ...+.|+||||+.+|.......++.+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~-------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-------TVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 74 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-------ccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCC
Confidence 5799999999999998877765432212211 22111 1233443 356899999999988776667788999
Q ss_pred eEEEEEeCCCCCcccH-HHHHH-HHHH--cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQS-ETVWR-QADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT-~~v~~-~a~~--~~ip~il~INK~Dr~~ 186 (742)
++++|.|...--.-+. ...|. .... .++|++++.||+|+..
T Consensus 75 ~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 75 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 9999999874211111 12232 2222 3789999999999764
No 249
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.07 E-value=9.1e-10 Score=109.97 Aligned_cols=112 Identities=11% Similarity=0.086 Sum_probs=74.4
Q ss_pred EEEEEeecccCcccccceeccCCccC-CCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATM-DWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~-D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
+|+++|..++|||+++.++-.+.-.. .+.+ .-|.+... ..+..++ ..++++||||...|.......++.+|+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~---t~~~~~~~--~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 76 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQN---TIGAAFVA--KRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKA 76 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCccc---ceeeEEEE--EEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCE
Confidence 68999999999999988775543221 1111 01112211 2334444 567799999998887777777889999
Q ss_pred EEEEEeCCCCCcccH-HHHHHHHHHc--CCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQS-ETVWRQADKY--GVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT-~~v~~~a~~~--~ip~il~INK~Dr~~ 186 (742)
+|+|+|......-+. +.+++.+... ++|++++.||+|+..
T Consensus 77 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 77 AIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 999999976432222 2233334333 689999999999753
No 250
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.06 E-value=1.6e-09 Score=108.01 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=81.7
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHh
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRV 143 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~ 143 (742)
+.+..|+++|....|||+++.+...+..... ....++..-...++..++ ..++|+||||+.+|.......++.
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~-----~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ 78 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESP-----YGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRG 78 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC-----CCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 3457899999999999999888765432111 112233333333444444 788999999999999888888899
Q ss_pred hceEEEEEeCCCCCcccH-HHHHHHHHH--cCCCeEEEEecccCCC
Q 004615 144 LDGAICLFDSVAGVEPQS-ETVWRQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 144 ~DgailVVDa~~Gv~~qT-~~v~~~a~~--~~ip~il~INK~Dr~~ 186 (742)
+|++|+|+|.+..-.-+. +..+.++.+ .++|+|++-||+|+..
T Consensus 79 ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 79 AQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 999999999987543333 233344443 4789999999999753
No 251
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.06 E-value=1.7e-10 Score=96.73 Aligned_cols=68 Identities=40% Similarity=0.581 Sum_probs=62.9
Q ss_pred ceEEEEEEEeeEecCCCEEEe--CCCCce---EecceEEEeecCceeecccccCCCEEEEcCCCc-cccCceee
Q 004615 369 GSLTFVRVYAGTLSAGSYVLN--ANKGKK---ERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLC 436 (742)
Q Consensus 369 G~l~~~RV~sG~L~~gd~v~~--~~~~~~---~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~-~~tGdTL~ 436 (742)
|+++++||+||+|++||+|++ ..+++. .+|++|+.+++...+++..+.||+++.+.++++ +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999 545555 899999999999999999999999999999999 79999997
No 252
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.05 E-value=7.6e-10 Score=108.32 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=73.2
Q ss_pred EEEEeecccCcccccceeccCCccCCCcHhHHhhcceEec-ceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 71 FSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITS-AATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 71 i~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s-~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
|+|+|...+|||+++.+...+.-...+.+ |+.. -...+.+++ ..+.++||||+.+|.......++.+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 73 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVP-------TVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVF 73 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCC-------cEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEE
Confidence 57999999999999887765542222211 1111 112333343 4689999999999987777788899999
Q ss_pred EEEEeCCCCCcccHH--HHHHHHHH--cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~--~v~~~a~~--~~ip~il~INK~Dr~~ 186 (742)
|+|+|....-.-+.. .++....+ .++|+|++.||+|+..
T Consensus 74 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 74 LICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 999998764222211 12333333 3799999999999764
No 253
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.05 E-value=1.8e-09 Score=106.22 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=74.5
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecc-eEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~-~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
.+|+++|...+|||+++.+...|.-.-++.+ |+... ...+..+ ...++|+||||+.+|.......++.+|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~-------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-------TVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 74 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCC-------cceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCC
Confidence 3689999999999998865554432222211 11111 1123333 467889999999999887778889999
Q ss_pred eEEEEEeCCCCCcccHH-HHHHH-HHH--cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSE-TVWRQ-ADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~-~v~~~-a~~--~~ip~il~INK~Dr~~ 186 (742)
++|+|+|...--.-+.. ..|.. ... .++|+|++.||+|+..
T Consensus 75 ~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 75 VFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 99999999874333332 23432 222 3689999999999853
No 254
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.05 E-value=1.2e-09 Score=106.99 Aligned_cols=114 Identities=14% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCccEEEEEeecccCcccccceeccCCcc-CCCcHhHHhhcceEecc--eEEEEecC--eEEEEEcCCCccCcHHHHHHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTAT-MDWMEQEQERGITITSA--ATTTYWNK--HRINIIDTPGHVDFTLEVERA 140 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~-~D~~~~E~erGITi~s~--~~~~~~~~--~~inlIDTPGh~DF~~ev~~a 140 (742)
.++.+|+++|...+|||+++.+.-.+... .++.+ |+... ...+.+++ ..++++||+|...|.......
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-------T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~ 74 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-------TIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAE 74 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-------ccCcceEEEEEEECCeEEEEEEEecCCcccccccchhh
Confidence 35789999999999999988887655422 22211 22221 12344555 567889999999887777777
Q ss_pred HHhhceEEEEEeCCCCCcccH-HHHHHHHH-HcCCCeEEEEecccCCC
Q 004615 141 LRVLDGAICLFDSVAGVEPQS-ETVWRQAD-KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 141 l~~~DgailVVDa~~Gv~~qT-~~v~~~a~-~~~ip~il~INK~Dr~~ 186 (742)
++.+|++|+|+|+.+.-.-+. ..+++... ..++|+++++||+|+..
T Consensus 75 ~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 75 LAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 899999999999976421111 13333332 23799999999999753
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.02 E-value=8e-10 Score=101.01 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=81.8
Q ss_pred EEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc---------HHHHH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF---------TLEVE 138 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF---------~~ev~ 138 (742)
.|+++|.+++||||++..+...+ .+.+. .+.|.....-.+.+++..+.|+||||..+- ..+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~ 74 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI------PGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFL 74 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS------TTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc------ccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHH
Confidence 48999999999999888876432 22222 567777766677889999999999998652 33466
Q ss_pred HHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEec
Q 004615 139 RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNK 181 (742)
Q Consensus 139 ~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK 181 (742)
+.++.+|.+++|+|+......+...++++++ .+.|.++++||
T Consensus 75 ~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 75 EQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 6677899999999988855556677888886 88999999998
No 256
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.01 E-value=1.6e-09 Score=110.10 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=75.5
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec---CeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~---~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
.+|+++|..++|||+++..+..++....+ ...++++.....+.+. ...++|+||||+..|.......++.+|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-----~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 77 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-----DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSV 77 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-----CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCc
Confidence 57999999999999988877655421111 1222233333334442 367899999999999888888899999
Q ss_pred eEEEEEeCCCCCcccH-HHHHHHHHH----cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT-~~v~~~a~~----~~ip~il~INK~Dr~~ 186 (742)
++|+|+|..+.-.-+. ...+..+.+ ...|.+++.||.|+..
T Consensus 78 ~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 78 GVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 9999999886422121 222333332 3456788899999753
No 257
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.01 E-value=1.9e-09 Score=106.93 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=74.3
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|....|||+++.+.-.|.-.-++.+ .-|.... ...+..++ ..++++||+|+..|..-....++.+|++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~---T~g~~~~--~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~i 76 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQ---TLGVNFM--EKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAI 76 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC---ccceEEE--EEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEE
Confidence 589999999999999887755432222221 1122222 23344444 6789999999999988888889999999
Q ss_pred EEEEeCCCCCcccHH-HHHHHHHH---cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~-~v~~~a~~---~~ip~il~INK~Dr~~ 186 (742)
++|+|.++--..+.. ..++++.+ ..+| |++.||+|+..
T Consensus 77 ilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 77 LFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 999998764322222 23344443 2345 78899999753
No 258
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.99 E-value=2.8e-09 Score=106.55 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=76.3
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceE-EEEec--CeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TTYWN--KHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~-~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
-+|+++|...+|||+++-+...|.-.-.+ --|+..... .+..+ ...++|+||||+..|.......++.+|
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~-------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~ 76 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEY-------IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTN 76 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCC-------CCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCC
Confidence 47999999999999988776654321111 123322211 12233 467899999999999887777889999
Q ss_pred eEEEEEeCCCCCcccHHH-HHHH-HHH--cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSET-VWRQ-ADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~-v~~~-a~~--~~ip~il~INK~Dr~~ 186 (742)
++|+|.|...--.-+... .|.. ... .++|++++.||.|+..
T Consensus 77 ~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 77 VFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 999999998743333332 3432 222 4789999999999754
No 259
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.97 E-value=1.7e-09 Score=110.82 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=71.2
Q ss_pred EEEEEeecccCcccccceeccCCcc-CCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHH-hhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTAT-MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALR-VLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~-~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~-~~Dga 147 (742)
+|+++|....|||+++.++..|... ..+.+. -+.......+.+......++|+||||+.++.. ...++ .+|++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t---~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~ad~i 76 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDAS---GDDDTYERTVSVDGEESTLVVIDHWEQEMWTE--DSCMQYQGDAF 76 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCC---ccccceEEEEEECCEEEEEEEEeCCCcchHHH--hHHhhcCCCEE
Confidence 6899999999999998887544322 111110 01011112222333567899999999974432 34556 89999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHH----cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT-~~v~~~a~~----~~ip~il~INK~Dr~~ 186 (742)
|+|+|+.+.-.-+. ..++.++.+ .++|+|++.||+|+..
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 99999987533221 233344443 4689999999999754
No 260
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.97 E-value=2e-09 Score=100.91 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=69.1
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCC----ccCcHHHHHHHHHhh
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG----HVDFTLEVERALRVL 144 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPG----h~DF~~ev~~al~~~ 144 (742)
++|.++|.+.+||||+...+....... -++.++ .|. =++||||| +..|..-.......+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~------------~KTq~i--~~~---~~~IDTPGEyiE~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY------------KKTQAI--EYY---DNTIDTPGEYIENPRFYHALIVTAQDA 64 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc------------Ccccee--Eec---ccEEECChhheeCHHHHHHHHHHHhhC
Confidence 579999999999999988776632111 111122 222 25699999 556777777777889
Q ss_pred ceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 145 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
|.+++|.||++.-+.=. -..+...+.|+|-+|||+|+.
T Consensus 65 d~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred CEEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCc
Confidence 99999999998532211 234556779999999999988
No 261
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.97 E-value=5.8e-09 Score=101.12 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=75.3
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|...+|||+++-+.-.|.-...+ ...+..+.....+..++ ..++++||||..+|.......++.+|++
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH-----ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGI 76 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC-----CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEE
Confidence 5899999999999988766554322111 12222222333444444 5788999999999988888899999999
Q ss_pred EEEEeCCCCCcccHHHHH-HHHHH---cCCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~-~~a~~---~~ip~il~INK~Dr~~ 186 (742)
++|+|...--.-+...-| ..... .++|++++-||.|...
T Consensus 77 i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 77 FLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 999998763222222222 22222 3688999999999753
No 262
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.97 E-value=3.5e-09 Score=109.23 Aligned_cols=97 Identities=15% Similarity=0.276 Sum_probs=72.1
Q ss_pred EEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc-------HHHHHHHH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEVERAL 141 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF-------~~ev~~al 141 (742)
+|+++|.+++|||+++..+.... .+.++ .+.|+......+.+++..++++||||+.+. ..++...+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~------~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~ 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAY------EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVA 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCC------CCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhh
Confidence 58999999999999888776432 12221 345666666677889999999999998643 34667889
Q ss_pred HhhceEEEEEeCCCCCcccHHHHHHHHHHcCC
Q 004615 142 RVLDGAICLFDSVAGVEPQSETVWRQADKYGV 173 (742)
Q Consensus 142 ~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~i 173 (742)
+.+|++++|+|+... ..|-..+++.+...|+
T Consensus 76 ~~ad~il~V~D~t~~-~~~~~~~~~~l~~~gi 106 (233)
T cd01896 76 RTADLILMVLDATKP-EGHREILERELEGVGI 106 (233)
T ss_pred ccCCEEEEEecCCcc-hhHHHHHHHHHHHcCc
Confidence 999999999999863 3355667777776665
No 263
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.91 E-value=7.6e-09 Score=102.05 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=77.5
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecce-EEEEe--cCeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYW--NKHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~-~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
.+|+++|+...|||+++.+...|.-.-++.+ |+.... ..+.. ...+++|+||+|+..|..-....++.+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~-------Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~ 74 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-------TVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGAD 74 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC-------cceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCc
Confidence 3689999999999999888766543222222 222111 12223 3477899999999999888888899999
Q ss_pred eEEEEEeCCCCCcccHH--HHHHHHHH--cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~--~v~~~a~~--~~ip~il~INK~Dr~~ 186 (742)
++|+|.|.+.--.-+.. ..++.+.+ .++|+|++-||+|+..
T Consensus 75 ~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 75 VFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred EEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 99999998864333332 23344432 4789999999999753
No 264
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.89 E-value=3.1e-08 Score=90.79 Aligned_cols=112 Identities=19% Similarity=0.259 Sum_probs=86.2
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
-.+.++|-.++||+|.+..+..|.-.-|-- -|+....-.+.-++..|-+.|.||...|....++.-|.+|..+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmi-------ptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMI-------PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhc-------ccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 468899999999999999888776444443 2444444555567889999999999999999999999999999
Q ss_pred EEEeCCCC--Cccc---HHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 149 CLFDSVAG--VEPQ---SETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 149 lVVDa~~G--v~~q---T~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
.+|||.+- ++.- -..++....-.|+|.++.-||.|+.+|
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 99999872 1221 222333334468999999999999875
No 265
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.85 E-value=1.8e-08 Score=99.55 Aligned_cols=110 Identities=12% Similarity=0.079 Sum_probs=75.6
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecce-EEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~-~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
+|+++|....|||+++.+...|....++.+ |+.... ..+..+ ...++|+||||+..|.......++.+|+
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~-------t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ 75 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVP-------TVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDA 75 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCC-------ceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCE
Confidence 689999999999998887766542222221 221111 123333 4678899999999998777778899999
Q ss_pred EEEEEeCCCCCcccH-HHHH-HHHHH--cCCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQS-ETVW-RQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT-~~v~-~~a~~--~~ip~il~INK~Dr~~ 186 (742)
+|+|.|.+.--.-+. ..-| ..+.+ .++|+|++.||+|+..
T Consensus 76 ~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 76 VLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 999999986543333 2234 33333 3689999999999743
No 266
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.85 E-value=2.6e-08 Score=101.49 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=77.2
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
..+|+++|+..+|||+++.+.-.|...-.+.+ .-|+.+.........+...++++||||+.+|.......++.+|++
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIP---TLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCC---ccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 46899999999999998865433321111110 012222222222223568999999999999977777778899999
Q ss_pred EEEEeCCCCCcccHHHHHHH-HH--HcCCCeEEEEecccCC
Q 004615 148 ICLFDSVAGVEPQSETVWRQ-AD--KYGVPRICFVNKMDRL 185 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~~~-a~--~~~ip~il~INK~Dr~ 185 (742)
|+|+|..+....++..-|.. .. ..++|++++.||+|..
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 99999998766555444422 11 2578999999999974
No 267
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.84 E-value=2.6e-08 Score=98.79 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=77.5
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecce-EEEEec--CeEEEEEcCCCccCcHHHHHHHHHh
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYWN--KHRINIIDTPGHVDFTLEVERALRV 143 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~-~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~ 143 (742)
....|+++|....|||+++.+...|....++. -|+.... ..+..+ ...++|+||+|...|..-....++.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~-------pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ 76 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYV-------PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 76 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccC-------CceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCC
Confidence 34679999999999999988776654322221 1222111 123333 4678999999999998877778899
Q ss_pred hceEEEEEeCCCCCcccHH-HHH-HHHHH--cCCCeEEEEecccCC
Q 004615 144 LDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRL 185 (742)
Q Consensus 144 ~DgailVVDa~~Gv~~qT~-~v~-~~a~~--~~ip~il~INK~Dr~ 185 (742)
+|++|+|.|.+.--.-+.. .-| +.+.+ .+.|+|++.||+|+.
T Consensus 77 ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 77 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 9999999998875443432 334 33333 368999999999974
No 268
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=4.6e-08 Score=93.98 Aligned_cols=112 Identities=20% Similarity=0.259 Sum_probs=90.3
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
-.+|.++|-=++||||.+-....|..++- . =||....-++.|++..++++|.-|+..+..-.....+..+++
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~vtt-v-------PTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-V-------PTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCcccC-C-------CccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEE
Confidence 36899999999999998888777765554 3 399999999999999999999999988888899999999999
Q ss_pred EEEEeCCCC--CcccHHHHHHHHHH---cCCCeEEEEecccCCCC
Q 004615 148 ICLFDSVAG--VEPQSETVWRQADK---YGVPRICFVNKMDRLGA 187 (742)
Q Consensus 148 ilVVDa~~G--v~~qT~~v~~~a~~---~~ip~il~INK~Dr~~~ 187 (742)
|+|||+.+- +..--+++.+.... .+.|.+++.||.|..++
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 999999863 22212233344333 37889999999998875
No 269
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.82 E-value=3.1e-08 Score=86.49 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=73.5
Q ss_pred CCCeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCCC--
Q 004615 352 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 427 (742)
Q Consensus 352 ~~p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~-- 427 (742)
+.||++.|.+++..++.|.+..|||.+|+++.||+|++.+.+...+|++|.... .++++|.|||.+++ .+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~----~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHH----EPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECC----cCcCEECCCCEEEEEECCCCHH
Confidence 579999999999988889999999999999999999999999888999996442 67899999999998 4543
Q ss_pred ccccCceeecCCC
Q 004615 428 DTITGETLCDADH 440 (742)
Q Consensus 428 ~~~tGdTL~~~~~ 440 (742)
++++||.||++++
T Consensus 78 ~v~~G~vl~~~~~ 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HcCCcCEEccCCC
Confidence 3789999998653
No 270
>PTZ00099 rab6; Provisional
Probab=98.81 E-value=2.9e-08 Score=97.90 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=52.2
Q ss_pred CeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHH-HHHHH---cCCCeEEEEecccCCC
Q 004615 119 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~-~~a~~---~~ip~il~INK~Dr~~ 186 (742)
...++|+||||+..|...+...++.+|++|+|+|....-.-+...-| ..+.+ .++|+|++.||+|+..
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 47889999999999999899999999999999999875333332223 33332 3578899999999753
No 271
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.81 E-value=3.7e-08 Score=84.49 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=68.9
Q ss_pred CeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCCC--cc
Q 004615 354 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 429 (742)
Q Consensus 354 p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~~ 429 (742)
||++.|..++..+ .|++..|||.+|++++||+|+..+.+...+|++|...+ .++++|.|||.+++ .+++ ++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~----~~~~~a~aGd~v~~~l~~~~~~~v 75 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDD----EEVDYAVAGENVRLKLKGIDEEDI 75 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECC----eECCEECCCCEEEEEECCCCHHHC
Confidence 6889999999888 89999999999999999999999999888999986443 78999999999996 5554 48
Q ss_pred ccCceeec
Q 004615 430 ITGETLCD 437 (742)
Q Consensus 430 ~tGdTL~~ 437 (742)
+.|++||+
T Consensus 76 ~~G~vl~~ 83 (83)
T cd03698 76 SPGDVLCS 83 (83)
T ss_pred CCCCEEeC
Confidence 89999874
No 272
>PRK09866 hypothetical protein; Provisional
Probab=98.80 E-value=4.7e-08 Score=110.48 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=58.3
Q ss_pred CeEEEEEcCCCccC-----cHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcC--CCeEEEEecccCC
Q 004615 119 KHRINIIDTPGHVD-----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRL 185 (742)
Q Consensus 119 ~~~inlIDTPGh~D-----F~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~--ip~il~INK~Dr~ 185 (742)
..++.|+||||... +...+..++..+|.+++|||+..+.....+.+++...+.+ .|++++|||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 47899999999643 4556788999999999999999988888899999888887 4999999999975
No 273
>COG2262 HflX GTPases [General function prediction only]
Probab=98.79 E-value=4.9e-08 Score=104.76 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=83.4
Q ss_pred CCCccEEEEEeecccCcccccceeccCCcc-CCCcHhHHhhcceEecceEEEEec-CeEEEEEcCCCccCc-HHHH----
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEVHEGTAT-MDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDF-TLEV---- 137 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~-~D~~~~E~erGITi~s~~~~~~~~-~~~inlIDTPGh~DF-~~ev---- 137 (742)
.+.++.|+++|-.|+||||+++.+..-+.+ -|-+ =-|.+...-.+.+. ++.+.|-||=|+++= -.+.
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L------FATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AF 262 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQL------FATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAF 262 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccc------cccccCceeEEEeCCCceEEEecCccCcccCChHHHHHH
Confidence 467899999999999999999877643322 2222 24666677777776 699999999998752 1222
Q ss_pred ---HHHHHhhceEEEEEeCCCC-CcccHHHHHHHHHH---cCCCeEEEEecccCCC
Q 004615 138 ---ERALRVLDGAICLFDSVAG-VEPQSETVWRQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 138 ---~~al~~~DgailVVDa~~G-v~~qT~~v~~~a~~---~~ip~il~INK~Dr~~ 186 (742)
......+|..+.|||+++. +..|-+.+.+.+.+ ..+|+|++.||+|+..
T Consensus 263 ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 263 KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 2233568999999999874 45555555555555 5689999999999865
No 274
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.79 E-value=3.1e-08 Score=83.49 Aligned_cols=78 Identities=31% Similarity=0.428 Sum_probs=67.9
Q ss_pred eEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCC--CCceEecceEEEeecCceeecccccCCCEEEEcCCCc--cc
Q 004615 355 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD--TI 430 (742)
Q Consensus 355 ~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~--~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~--~~ 430 (742)
+.++|++++.+++.|+++++||++|+|++||.+++.+ .....+|.+|+..+ .+++++.|||++++.+.+. ++
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIK 76 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC----ceeceecCCCEEEEEEccccccC
Confidence 3578999999998999999999999999999999887 66678899987665 6788999999999977654 88
Q ss_pred cCceee
Q 004615 431 TGETLC 436 (742)
Q Consensus 431 tGdTL~ 436 (742)
+||+++
T Consensus 77 ~g~~l~ 82 (83)
T cd01342 77 IGDTLT 82 (83)
T ss_pred CCCEec
Confidence 999885
No 275
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.79 E-value=4.8e-08 Score=100.41 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=76.2
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecce-EEEEe--cCeEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYW--NKHRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~-~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
.-.|+++|....|||+++.+...|...-++.+ |+.... ..+.. ....++|+||+|..+|..-....++.+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~p-------Ti~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a 85 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVP-------TVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 85 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCC-------ceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence 35789999999999998877665532222211 221111 12233 346789999999999988777888999
Q ss_pred ceEEEEEeCCCCCcccH-HHHH-HHHHH--cCCCeEEEEecccCC
Q 004615 145 DGAICLFDSVAGVEPQS-ETVW-RQADK--YGVPRICFVNKMDRL 185 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT-~~v~-~~a~~--~~ip~il~INK~Dr~ 185 (742)
|++|+|.|.+.--.-+. ...| ..+.+ .+.|+|+|.||+|+.
T Consensus 86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 86 DAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99999999987544443 2334 33433 368899999999974
No 276
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.78 E-value=6.9e-08 Score=93.47 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=69.9
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+|+++|...+|||+++-+.-.|...-++.+ +...-..++.+++ +.+.++||+|..++ ...+.+|++
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-------~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ 69 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESP-------EGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAV 69 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCC-------CccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEE
Confidence 689999999999998876544432111211 1111123345555 66899999999653 345789999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHH----cCCCeEEEEecccCC
Q 004615 148 ICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRL 185 (742)
Q Consensus 148 ilVVDa~~Gv~~qT-~~v~~~a~~----~~ip~il~INK~Dr~ 185 (742)
++|.|..+--.-|. ..+++.+.. .++|++++.||+|+.
T Consensus 70 ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 70 IFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 99999987555555 344455543 357999999999963
No 277
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.78 E-value=4e-08 Score=101.47 Aligned_cols=115 Identities=15% Similarity=0.260 Sum_probs=83.7
Q ss_pred CCccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCeE-EEEEcCCCccC-------cHHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHR-INIIDTPGHVD-------FTLE 136 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~-inlIDTPGh~D-------F~~e 136 (742)
..+..|+++|-+|+||+|+++.+..-+ .+-+|- =.|+....-+..|+++. |.+-|-||.+. ...+
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~Ya------FTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~ 267 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYA------FTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYK 267 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccc------eeeeccccceeeccccceeEeccCccccccccccCcccHH
Confidence 456789999999999999999886543 555652 26788888888888876 99999999653 2233
Q ss_pred HHHHHHhhceEEEEEeCCCC----CcccHHHHHHHHHHc-----CCCeEEEEecccCCC
Q 004615 137 VERALRVLDGAICLFDSVAG----VEPQSETVWRQADKY-----GVPRICFVNKMDRLG 186 (742)
Q Consensus 137 v~~al~~~DgailVVDa~~G----v~~qT~~v~~~a~~~-----~ip~il~INK~Dr~~ 186 (742)
..+=+.-|++.++|||...+ .-.|-+.+|+.+..+ ..|.++|+||||.+.
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence 44555568999999999876 222334444444433 468899999999863
No 278
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.76 E-value=8.1e-09 Score=101.10 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=69.6
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe---cCeEEEEEcCCCccCcHHHHHHH---H
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHVDFTLEVERA---L 141 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~---~~~~inlIDTPGh~DF~~ev~~a---l 141 (742)
.+.|.++|..++|||++.-.+..|....-. .|| -....+.. ++..+.+||+|||.....+.... +
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~--------tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~ 73 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTV--------TSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYL 73 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B-----------S-SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCee--------ccc-cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhch
Confidence 478999999999999988877766422211 223 12222222 45789999999999988877776 8
Q ss_pred HhhceEEEEEeCCCCCcccHHHHHHHH-------H--HcCCCeEEEEecccCCCCC
Q 004615 142 RVLDGAICLFDSVAGVEPQSETVWRQA-------D--KYGVPRICFVNKMDRLGAN 188 (742)
Q Consensus 142 ~~~DgailVVDa~~Gv~~qT~~v~~~a-------~--~~~ip~il~INK~Dr~~~~ 188 (742)
..+-|+|+|||++. ...+-+.+.+++ . ..++|++++.||.|...+.
T Consensus 74 ~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 74 SNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp GGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 89999999999974 222223332222 2 3578889999999998765
No 279
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.76 E-value=6.3e-08 Score=96.37 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=71.0
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecc-eEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~-~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
.+|+++|...+|||+++..+..|...-.+ . -|+... ...+.+++ ..++++||||+.+|.......++.+|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~-----~--~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~ 74 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEY-----H--PTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAH 74 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc-----C--CcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCC
Confidence 47999999999999988777654321111 1 122111 11333443 45789999999887654445678899
Q ss_pred eEEEEEeCCCCCcccHH-HHH-HHHHH--cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~-~v~-~~a~~--~~ip~il~INK~Dr~~ 186 (742)
++|++.|....-..+.. ..| ..+++ ..+|+|++.||+|+..
T Consensus 75 ~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 75 VILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 99999998653222221 123 33332 3689999999999753
No 280
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.75 E-value=7e-08 Score=98.66 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=76.4
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecce-EEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYWN--KHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~-~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
..|+++|...+|||+++-+...+....++.+ |+.... ..+..+ ...++|+||+|...|..-....++.+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~p-------Ti~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d 74 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVP-------TVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSD 74 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCC-------ccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCC
Confidence 4689999999999998877655442222222 221111 233443 467889999999999888888889999
Q ss_pred eEEEEEeCCCCCcccHH-HHHHH-HH--HcCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSE-TVWRQ-AD--KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~-~v~~~-a~--~~~ip~il~INK~Dr~~ 186 (742)
++|+|+|..+.-.-+.. ..|.. .. ..++|+|++.||+|+..
T Consensus 75 ~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 75 AVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 99999999875332222 33432 22 24689999999999753
No 281
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.72 E-value=8e-08 Score=96.58 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=69.7
Q ss_pred cEEEEEeecccCcccccceecc------CCccCCCcHhHHhhcceEecceEEEEec-CeEEEEEcCCCccCcHHHHHH--
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHE------GTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFTLEVER-- 139 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~------g~~~~D~~~~E~erGITi~s~~~~~~~~-~~~inlIDTPGh~DF~~ev~~-- 139 (742)
.+|+++|...+||||.+..+.. |...++. -..|... ..+... ...+.++||||..++......
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~------~~~t~~~--~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l 73 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGV------VETTMKR--TPYPHPKFPNVTLWDLPGIGSTAFPPDDYL 73 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCc------cccccCc--eeeecCCCCCceEEeCCCCCcccCCHHHHH
Confidence 4799999999999997776643 2221221 0112211 111111 347899999998654222222
Q ss_pred ---HHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 140 ---ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 140 ---al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
.+..+|..++|.| +........+++.+.+.+.|+++|+||+|+..
T Consensus 74 ~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 74 EEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred HHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 2445788777754 45666777788888889999999999999854
No 282
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.71 E-value=4.4e-08 Score=103.56 Aligned_cols=131 Identities=19% Similarity=0.259 Sum_probs=91.1
Q ss_pred cEEEEEeecccCcccccceeccCCccCCC-----cHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHH------
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDW-----MEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTL------ 135 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~-----~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~------ 135 (742)
-+|.++|+..+||||.+.++-.+....-. ..++..+.+++......+.+++ ..+++|||||+-|+..
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 48999999999999988887543311110 1223445566777777777777 5799999999877632
Q ss_pred ---------------HHHHHHH-------hhceEEEEEeCCC-CCcccHHHHHHHHHHcCCCeEEEEecccCCCC-ChHH
Q 004615 136 ---------------EVERALR-------VLDGAICLFDSVA-GVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFR 191 (742)
Q Consensus 136 ---------------ev~~al~-------~~DgailVVDa~~-Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~-~~~~ 191 (742)
+..+..| .+|++++++++.. |+......+++.+.. ++|+|+++||+|+... +...
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~~~ 163 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEELKE 163 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHHHH
Confidence 1122223 3689999999874 788888888888875 8999999999999653 2334
Q ss_pred HHHHHHHHh
Q 004615 192 TRDMIVTNL 200 (742)
Q Consensus 192 ~~~~i~~~l 200 (742)
....+++.+
T Consensus 164 ~k~~i~~~l 172 (276)
T cd01850 164 FKQRIMEDI 172 (276)
T ss_pred HHHHHHHHH
Confidence 455555554
No 283
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.67 E-value=1e-07 Score=99.47 Aligned_cols=113 Identities=22% Similarity=0.271 Sum_probs=80.0
Q ss_pred CccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc--------HHHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--------TLEV 137 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF--------~~ev 137 (742)
+.+.|.|.|++|.||||++..+..-+ -+-+| | =.|=....-+|+++..+|.+|||||..|= -.+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y-P-----FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY-P-----FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCC-C-----ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH
Confidence 67899999999999999998876543 22222 0 01222334678888899999999998773 3445
Q ss_pred HHHHHhh-ceEEEEEeCCC--C--CcccHHHHHHHHH-HcCCCeEEEEecccCCC
Q 004615 138 ERALRVL-DGAICLFDSVA--G--VEPQSETVWRQAD-KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 138 ~~al~~~-DgailVVDa~~--G--v~~qT~~v~~~a~-~~~ip~il~INK~Dr~~ 186 (742)
..||+-. +.+++++|.++ | ++.|- .+|+..+ ..+.|+++|+||+|...
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhcCCCeEEEEecccccc
Confidence 7788755 56788999876 3 34443 3556655 45678999999999774
No 284
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.1e-07 Score=103.53 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=91.8
Q ss_pred CCccEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc---------H
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF---------T 134 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF---------~ 134 (742)
++-.+|+|+|.+|.||+++++.+..-. .+.+- -|.|.++--+.+..+++.+.|+||.|...= .
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv------~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI 339 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPV------PGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGI 339 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCC------CCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhH
Confidence 344799999999999999998775433 33433 799999999999999999999999997651 2
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecc
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 182 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~ 182 (742)
.....+++.+|.+++||||.++...+...+.+.+...+..+.+.+|||
T Consensus 340 ~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 340 ERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred HHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 334677889999999999999999999888898888887777777777
No 285
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.63 E-value=1.9e-07 Score=93.72 Aligned_cols=114 Identities=18% Similarity=0.055 Sum_probs=67.8
Q ss_pred cEEEEEeecccCcccccc-eeccCCccCCCcHhHHhhcceEe---cceE----------EEEecCeEEEEEcCCCccCcH
Q 004615 69 RQFSVFAMAAEGRNYKIG-EVHEGTATMDWMEQEQERGITIT---SAAT----------TTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g-~v~~g~~~~D~~~~E~erGITi~---s~~~----------~~~~~~~~inlIDTPGh~DF~ 134 (742)
-+|+++|....|||+++- ....+.-.-+....+ .--|+. .-.. .+.-+...++|+||+|..+..
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~--~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLAT--HVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKD 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccc--cCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhh
Confidence 479999999999999874 332211000000111 112331 0000 111135789999999986532
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHH-HHH-HHHHH--cCCCeEEEEecccCCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~-~v~-~~a~~--~~ip~il~INK~Dr~~ 186 (742)
....++.+|++|+|.|...--.-+.. ..| +.+.+ .++|+|++.||+|+..
T Consensus 81 --~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 81 --RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred --hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 23457889999999999875433332 234 33333 3689999999999754
No 286
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.60 E-value=2.6e-07 Score=89.11 Aligned_cols=112 Identities=22% Similarity=0.298 Sum_probs=76.9
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe--cCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
.|+++|...+||++++.++..+...-++.+. -| +......+.. ..+.+.|+||||+..|.......++.+|++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t---~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 75 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPT---IG--IDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAI 75 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETT---SS--EEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccc---cc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 4899999999999998887665433333221 12 2333444444 446799999999999988778889999999
Q ss_pred EEEEeCCCCCcccHHHHH-HHHHHc---CCCeEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSETVW-RQADKY---GVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~-~~a~~~---~ip~il~INK~Dr~~ 186 (742)
|+|.|...--.-+...-| ...... +.|++++.||.|...
T Consensus 76 ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 76 IIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred cccccccccccccccccccccccccccccccceeeeccccccc
Confidence 999998764333333333 333322 477888999999754
No 287
>PRK13768 GTPase; Provisional
Probab=98.59 E-value=4.9e-07 Score=94.43 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=50.2
Q ss_pred CeEEEEEcCCCccCcH---HHH---HHHHHh--hceEEEEEeCCCCCcccHHHHHHHHH-----HcCCCeEEEEecccCC
Q 004615 119 KHRINIIDTPGHVDFT---LEV---ERALRV--LDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRL 185 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~---~ev---~~al~~--~DgailVVDa~~Gv~~qT~~v~~~a~-----~~~ip~il~INK~Dr~ 185 (742)
+..+.+|||||+.++. ... .+.+.. .|++++|+|+..+....+........ +.++|+++++||+|..
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3478999999987742 222 233333 79999999998887776654433322 6789999999999987
Q ss_pred CCC
Q 004615 186 GAN 188 (742)
Q Consensus 186 ~~~ 188 (742)
..+
T Consensus 176 ~~~ 178 (253)
T PRK13768 176 SEE 178 (253)
T ss_pred Cch
Confidence 643
No 288
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.59 E-value=4.8e-07 Score=97.26 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=53.0
Q ss_pred EEEEeecccCcccccceeccCCc-cCCCcHhHHhhcceEecceEEEE------------------------ecCeEEEEE
Q 004615 71 FSVFAMAAEGRNYKIGEVHEGTA-TMDWMEQEQERGITITSAATTTY------------------------WNKHRINII 125 (742)
Q Consensus 71 i~iiGh~~~Gk~~~~g~v~~g~~-~~D~~~~E~erGITi~s~~~~~~------------------------~~~~~inlI 125 (742)
|+++|.+++||||++..+..... +.|+ .+.|+........ +....+.|+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~------pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~ 74 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANY------PFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELI 74 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCC------CCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEE
Confidence 58999999999998888765442 2222 1233333222111 234679999
Q ss_pred cCCCcc----CcH---HHHHHHHHhhceEEEEEeCCC
Q 004615 126 DTPGHV----DFT---LEVERALRVLDGAICLFDSVA 155 (742)
Q Consensus 126 DTPGh~----DF~---~ev~~al~~~DgailVVDa~~ 155 (742)
||||.+ .+. ......+|.+|++++|||+..
T Consensus 75 D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 75 DVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 999973 333 345667999999999999974
No 289
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.56 E-value=1e-06 Score=82.77 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=84.2
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
--+|-|+|.-|+|||+....+..-. .|. ---|......++.++++++|++|--|...+..-.......+||.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~--~~~------i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED--TDT------ISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC--ccc------cCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 3578899999999999776654322 111 01256666778899999999999999999999999999999999
Q ss_pred EEEEeCCCCC-cccHHHHHHHH----HHcCCCeEEEEecccCCCC
Q 004615 148 ICLFDSVAGV-EPQSETVWRQA----DKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 148 ilVVDa~~Gv-~~qT~~v~~~a----~~~~ip~il~INK~Dr~~~ 187 (742)
|.|||..+-- ..++...++.+ +..|.|++++.||.|..++
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 9999997642 22333333333 3457899999999998753
No 290
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.55 E-value=6.7e-07 Score=76.49 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=64.8
Q ss_pred CeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCCC--cc
Q 004615 354 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 429 (742)
Q Consensus 354 p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~~ 429 (742)
||++.|..++... |.+..|||.+|++++||+|+..+.+...+|++|... ..++++|.|||.+++ .+++ ++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~i~~~~v 74 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE----DVEVRYARPGENVRLRLKGIEEEDI 74 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEEC----CEECCEECCCCEEEEEecCCCHHHC
Confidence 6788888888653 899999999999999999999999988899998643 268999999999998 3332 37
Q ss_pred ccCceeec
Q 004615 430 ITGETLCD 437 (742)
Q Consensus 430 ~tGdTL~~ 437 (742)
+.|+.||+
T Consensus 75 ~~G~vl~~ 82 (82)
T cd04089 75 SPGFVLCS 82 (82)
T ss_pred CCCCEEeC
Confidence 88998874
No 291
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.52 E-value=4.3e-08 Score=89.62 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=75.1
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 149 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgail 149 (742)
+|.|+|...+|||+++.++..+... +....+...+.++.............+.|+|++|...|.......+..+|++|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP-DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS---------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc-ccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence 4899999999999988877665433 222222234555555555555556679999999998887776667999999999
Q ss_pred EEeCCCCCcc-cHHHH---HHHHHH--cCCCeEEEEeccc
Q 004615 150 LFDSVAGVEP-QSETV---WRQADK--YGVPRICFVNKMD 183 (742)
Q Consensus 150 VVDa~~Gv~~-qT~~v---~~~a~~--~~ip~il~INK~D 183 (742)
|+|..+.-.- +...+ +..... .++|+|++.||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999874321 22223 222222 4599999999998
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.50 E-value=3e-07 Score=98.91 Aligned_cols=124 Identities=16% Similarity=0.125 Sum_probs=73.9
Q ss_pred CccEEEEEeecccCccccccee-----ccC-----------C------ccCCCcHhHH---hhcceEecceEEEEe----
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEV-----HEG-----------T------ATMDWMEQEQ---ERGITITSAATTTYW---- 117 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v-----~~g-----------~------~~~D~~~~E~---erGITi~s~~~~~~~---- 117 (742)
+...|+|.|.+.+||||.+..+ ..| + .+-|....++ .-+.-+.+.......
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 3468999999999999954432 111 1 1113222221 113344443333333
Q ss_pred ------------cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHH--HHHHHHHcCCCeEEEEeccc
Q 004615 118 ------------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKYGVPRICFVNKMD 183 (742)
Q Consensus 118 ------------~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~--v~~~a~~~~ip~il~INK~D 183 (742)
.++.+.||||+|... .++. ....+|.+++|++...|-..|... +++.+ -|++|||+|
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaD 205 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKAD 205 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhc
Confidence 368999999999873 3333 577899999998765665555422 34444 389999999
Q ss_pred CCCCC-hHHHHHHHHHH
Q 004615 184 RLGAN-FFRTRDMIVTN 199 (742)
Q Consensus 184 r~~~~-~~~~~~~i~~~ 199 (742)
+.... .++...+++..
T Consensus 206 l~~~~~a~~~~~el~~~ 222 (332)
T PRK09435 206 GDNKTAARRAAAEYRSA 222 (332)
T ss_pred ccchhHHHHHHHHHHHH
Confidence 87543 33444444443
No 293
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.4e-06 Score=84.57 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=90.2
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
.=.|.++|..+.||+-++-+..+ |...++...-|-++-...+++..+ .++.++||.|...|...+....|.++
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~-----~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKD-----DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhcc-----CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 34689999999999998888766 555666667777788888888865 46899999999999999999999999
Q ss_pred eEEEEEeCCCCCcccHHHHH-HHHHH---cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~v~-~~a~~---~~ip~il~INK~Dr~~ 186 (742)
|+|+|.|.+.--.-+....| ..+++ .++|++++-||.|...
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 99999999874333333334 23333 4689999999999764
No 294
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=5e-06 Score=81.68 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=86.1
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHH---hh
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALR---VL 144 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~---~~ 144 (742)
-+.|-++|..++||+++.-.+..|..- +. =.+|......+.+++....|||-|||.........-+. .+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~-~T-------vtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHR-GT-------VTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCcc-Ce-------eeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccc
Confidence 368999999999999988777776311 11 14788888899999999999999999988777666666 78
Q ss_pred ceEEEEEeCCCCC---cccHHHH---HHHH--HHcCCCeEEEEecccCCCCChHHH
Q 004615 145 DGAICLFDSVAGV---EPQSETV---WRQA--DKYGVPRICFVNKMDRLGANFFRT 192 (742)
Q Consensus 145 DgailVVDa~~Gv---~~qT~~v---~~~a--~~~~ip~il~INK~Dr~~~~~~~~ 192 (742)
-++|+|||+..-. ..-.+.+ +-.+ .+.++|++++.||-|..-|...+.
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~ 165 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEK 165 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHH
Confidence 8999999987632 1112222 2222 356788889999999988764443
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.42 E-value=1.1e-06 Score=94.83 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=96.2
Q ss_pred CccEEEEEeecccCcccccceeccCC---ccCCCcHhHHh--------hcceEecceEEE--------Eec---CeEEEE
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGT---ATMDWMEQEQE--------RGITITSAATTT--------YWN---KHRINI 124 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~---~~~D~~~~E~e--------rGITi~s~~~~~--------~~~---~~~inl 124 (742)
.-..|+++|.+++||||++.++-+-- .+.|-...||. .|-||.++--.| ... ...+-|
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 44689999999999999887654310 12222222332 264443333222 111 268899
Q ss_pred EcCCCccCc-------------------------HHH----HHHHHH-hhceEEEEE-eCC------CCCcccHHHHHHH
Q 004615 125 IDTPGHVDF-------------------------TLE----VERALR-VLDGAICLF-DSV------AGVEPQSETVWRQ 167 (742)
Q Consensus 125 IDTPGh~DF-------------------------~~e----v~~al~-~~DgailVV-Da~------~Gv~~qT~~v~~~ 167 (742)
|||+|+.|= ..- +...++ -+|.+|+|. |+. ++...-.+++++.
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999998652 111 455666 789999999 886 5666778889999
Q ss_pred HHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEE
Q 004615 168 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 207 (742)
Q Consensus 168 a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~ 207 (742)
+++.++|.|+++||.|-...+-....+++.++++..++++
T Consensus 176 Lk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v 215 (492)
T TIGR02836 176 LKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAM 215 (492)
T ss_pred HHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEE
Confidence 9999999999999999554455566778888888654443
No 296
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.42 E-value=1.4e-06 Score=74.70 Aligned_cols=79 Identities=27% Similarity=0.336 Sum_probs=65.3
Q ss_pred eEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCC--Cccc
Q 004615 355 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL--KDTI 430 (742)
Q Consensus 355 ~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl--~~~~ 430 (742)
|++.|.+++..++.|.+..|||.+|++++||++.+.+.+...+|++|... .+++++|.|||.+++ .++ +++.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~----~~~~~~a~aGd~v~i~l~~~~~~~i~ 76 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVH----GKDVEEAKAGDRVALNLTGVDAKDLE 76 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEEC----CcCcCEEcCCCEEEEEEcCCCHHHcC
Confidence 45778888888888999999999999999999999988888888888643 367899999999998 343 2467
Q ss_pred cCceeec
Q 004615 431 TGETLCD 437 (742)
Q Consensus 431 tGdTL~~ 437 (742)
.||.||+
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 8988863
No 297
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.42 E-value=1.9e-06 Score=73.48 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=63.6
Q ss_pred eEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCCCccccC
Q 004615 355 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITG 432 (742)
Q Consensus 355 ~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~~~~tG 432 (742)
|++-|..++.....|+.+.|||.+|++++||+|+..+.+...+|++|... ..+++.|.|||.+++ .+-+++.+|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETF----DGELDEAGAGESVTLTLEDEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEEC----CcEeCEEcCCCEEEEEECCccccCCC
Confidence 34566677766666778999999999999999999999988899999643 267899999999998 333457889
Q ss_pred ceeec
Q 004615 433 ETLCD 437 (742)
Q Consensus 433 dTL~~ 437 (742)
+.||.
T Consensus 77 ~vl~~ 81 (81)
T cd03695 77 DVIVA 81 (81)
T ss_pred CEEeC
Confidence 98873
No 298
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.40 E-value=2.3e-06 Score=94.81 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=55.7
Q ss_pred EEEEEeecccCcccccceeccCCc-cCCCcHhHHhhcceEecceEEEE---------------------e---cCeEEEE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTA-TMDWMEQEQERGITITSAATTTY---------------------W---NKHRINI 124 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~-~~D~~~~E~erGITi~s~~~~~~---------------------~---~~~~inl 124 (742)
.|+|+|.+++||||++..+..... +.|+ -+.|+........ + ....|+|
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~~~y------~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i 76 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEIANY------PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVEL 76 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccccCC------CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEE
Confidence 699999999999999888765442 2233 2344443332221 2 2356899
Q ss_pred EcCCCccC-------cHHHHHHHHHhhceEEEEEeCCC
Q 004615 125 IDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 155 (742)
Q Consensus 125 IDTPGh~D-------F~~ev~~al~~~DgailVVDa~~ 155 (742)
+||||..+ ......+.+|.+|++++|||+..
T Consensus 77 ~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 77 IDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred EEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 99999643 33466777999999999999974
No 299
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.39 E-value=1.6e-06 Score=83.58 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=42.5
Q ss_pred HHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 136 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 136 ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
...+.++.+|.+|+|+|+.++...+...+.+.+...+.|+++++||+|+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 45566677999999999998888888878777777899999999999975
No 300
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.39 E-value=1.6e-06 Score=87.43 Aligned_cols=110 Identities=13% Similarity=0.157 Sum_probs=77.0
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEec--ceEEEEe-------cCeEEEEEcCCCccCcHHHHHHH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITS--AATTTYW-------NKHRINIIDTPGHVDFTLEVERA 140 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s--~~~~~~~-------~~~~inlIDTPGh~DF~~ev~~a 140 (742)
.|+++|....|||+++.+...+.-...+ .-|+.. ....+.+ +.+.++|+||+|+.+|.......
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~-------~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~ 74 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRP-------SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVF 74 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-------CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHH
Confidence 5899999999999988877654321111 123321 1222333 24679999999999998888888
Q ss_pred HHhhceEEEEEeCCCCCcccHHHHH-HHHHH----------------------cCCCeEEEEecccCCC
Q 004615 141 LRVLDGAICLFDSVAGVEPQSETVW-RQADK----------------------YGVPRICFVNKMDRLG 186 (742)
Q Consensus 141 l~~~DgailVVDa~~Gv~~qT~~v~-~~a~~----------------------~~ip~il~INK~Dr~~ 186 (742)
++.+|++|+|.|.+..-.-+...-| ..+.+ .++|+|++-||+|+..
T Consensus 75 yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 75 YNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred hCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 8999999999999886444333334 33332 3689999999999864
No 301
>PLN00023 GTP-binding protein; Provisional
Probab=98.39 E-value=1.5e-06 Score=92.50 Aligned_cols=117 Identities=17% Similarity=0.117 Sum_probs=78.1
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe-------------cCeEEEEEcCCCccCc
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-------------NKHRINIIDTPGHVDF 133 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~-------------~~~~inlIDTPGh~DF 133 (742)
....|+++|+...|||+++.++..|.....+ +..-|.+.....+.+.- +.+.++|+||+|+..|
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~---~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARP---PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCccccc---CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 4468999999999999998887665422111 11112222222222211 2367999999999999
Q ss_pred HHHHHHHHHhhceEEEEEeCCCCCcccHH-HHHHHHHHc---------------CCCeEEEEecccCCC
Q 004615 134 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY---------------GVPRICFVNKMDRLG 186 (742)
Q Consensus 134 ~~ev~~al~~~DgailVVDa~~Gv~~qT~-~v~~~a~~~---------------~ip~il~INK~Dr~~ 186 (742)
.......++.+|++|+|+|.+.--.-+.. .+++.+.+. ++|+|+|-||+|+..
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 98888889999999999998763222222 233444432 478999999999854
No 302
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.39 E-value=2.1e-06 Score=89.24 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=78.8
Q ss_pred CCccEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHh
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRV 143 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~ 143 (742)
+...+|+++|++.+|||+.+..+-... .+.++ .+.|.........|++..+++|||||..|...+-...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~------~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~--- 99 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAF------QSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVN--- 99 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC------CCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHH---
Confidence 345799999999999999887775432 23333 2346666666777899999999999998763211100
Q ss_pred hceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChH--HHHHHHHHHhCCc
Q 004615 144 LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFF--RTRDMIVTNLGAK 203 (742)
Q Consensus 144 ~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~--~~~~~i~~~l~~~ 203 (742)
..-...+.+.+.+.+++.++++||+|....+.. .+++.|.+.||..
T Consensus 100 --------------~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~ 147 (249)
T cd01853 100 --------------RKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS 147 (249)
T ss_pred --------------HHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh
Confidence 000233445556667888999999997665544 6888888888753
No 303
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=5.8e-06 Score=81.38 Aligned_cols=116 Identities=17% Similarity=0.191 Sum_probs=85.1
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe--cCeEEEEEcCCCccCcHHHHHHHHHh
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDFTLEVERALRV 143 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~ 143 (742)
+..-.|.++|-...||+.++-++.++.-.+.+.. -|-|+...-++.. ...++.++||.|...|..-..+.+|.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~s-----TiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg 84 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFIS-----TIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG 84 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccc-----eEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence 4567899999999999999999888654443321 1333333444444 44677899999999999999999999
Q ss_pred hceEEEEEeCCCCCcccHHHHH-HHHHH---cCCCeEEEEecccCCC
Q 004615 144 LDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 144 ~DgailVVDa~~Gv~~qT~~v~-~~a~~---~~ip~il~INK~Dr~~ 186 (742)
++|++||+|.+.-..-.-..-| +..++ .++|.+++-||+|...
T Consensus 85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 85 AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 9999999998875544433334 33333 4789999999999764
No 304
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=3e-06 Score=77.77 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=82.0
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
-+|-++|-.-+||++..=+...|+-++.. -||.-+..++.+++.++++.|--|.-....-+.......|.+|
T Consensus 19 ~rililgldGaGkttIlyrlqvgevvttk--------Ptigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGEVVTTK--------PTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCcccccC--------CCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 57888999999999976666666544433 4777888889999999999999999887777888888999999
Q ss_pred EEEeCCCCCccc--HHHH---HHHHHHcCCCeEEEEecccCCCC
Q 004615 149 CLFDSVAGVEPQ--SETV---WRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 149 lVVDa~~Gv~~q--T~~v---~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
.|||..+--+-- ..++ ++.-.-.+-..++|.||+|-.++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 999987642221 1222 22222344556789999996653
No 305
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=2.4e-06 Score=82.64 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=79.5
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe--cC--eEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NK--HRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~--~~--~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
-.|+++|-...|||+++=+.-.|. +-++ .| -||..+..+-.+ .+ .++-++||.|...|.+-.--..|.+
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~--~e----~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA 78 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQ-FHEN--IE----PTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGA 78 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCc-cccc--cc----cccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCC
Confidence 468999999999999887754431 2121 13 377777776666 33 6778999999999998888899999
Q ss_pred ceEEEEEeCCCCCcccHHHHH-HHHHHcCCC-eE--EEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVW-RQADKYGVP-RI--CFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~-~~a~~~~ip-~i--l~INK~Dr~~ 186 (742)
++||+|.|.+.--.-+...-| ..+.+..-| ++ ++-||+|+..
T Consensus 79 ~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 79 NAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred cEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 999999999875444444444 444443333 22 5779999765
No 306
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.32 E-value=9.9e-06 Score=82.92 Aligned_cols=111 Identities=16% Similarity=0.168 Sum_probs=80.5
Q ss_pred CCccEEEEEeecccCcccccceeccCC--ccC----CCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC-------
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT--ATM----DWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD------- 132 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~--~~~----D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D------- 132 (742)
...-||-++|..-+|||+.++.+-.|+ .+. +..+.-+ .-..+.++.++|+||||.-|
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~----------~~~~~~~~~l~lwDtPG~gdg~~~D~~ 106 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR----------LRLSYDGENLVLWDTPGLGDGKDKDAE 106 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh----------HHhhccccceEEecCCCcccchhhhHH
Confidence 455788899999999999888776543 222 1111111 11224678899999999877
Q ss_pred cHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcC--CCeEEEEecccCCC
Q 004615 133 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLG 186 (742)
Q Consensus 133 F~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~--ip~il~INK~Dr~~ 186 (742)
+..-..--|.-.|.+++++|+.+---.-.+..|+.....+ .|.|++||..|+..
T Consensus 107 ~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 107 HRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred HHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhc
Confidence 4444666777889999999998876666788888776544 58899999999864
No 307
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.31 E-value=3e-06 Score=73.38 Aligned_cols=80 Identities=25% Similarity=0.272 Sum_probs=63.8
Q ss_pred eEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCC--CceEecceEEEeecCceeecccccCCCEEEE--cCCC--c
Q 004615 355 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--D 428 (742)
Q Consensus 355 ~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~--~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~--~ 428 (742)
|++.|..++..++.|.+..|||.+|+++.||+|...+. +.+.+|++|... ..++++|.|||.+++ .+++ +
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~ 76 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMF----RKTLDEAEAGDNVGVLLRGVKRED 76 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEEC----CcCCCEECCCCEEEEEECCCCHHH
Confidence 35677777777888999999999999999999997654 456778888643 367899999999998 3443 3
Q ss_pred cccCceeecC
Q 004615 429 TITGETLCDA 438 (742)
Q Consensus 429 ~~tGdTL~~~ 438 (742)
+.+|+.||++
T Consensus 77 v~rG~vl~~~ 86 (87)
T cd03697 77 VERGMVLAKP 86 (87)
T ss_pred cCCccEEecC
Confidence 7889999875
No 308
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.31 E-value=4.9e-06 Score=71.97 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=62.7
Q ss_pred EEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCC--C--ceEecceEEEeecCceeecccccCCCEEEE--cCCC--
Q 004615 356 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--G--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 427 (742)
Q Consensus 356 ~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~--~--~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~-- 427 (742)
.+.|..++..++.|.+..|||.+|++++||+++..+. + ...+|++|... ..++++|.|||.+++ .+++
T Consensus 2 ~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~ 77 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRN----RSPVRVVRAGQSASLALKKIDRS 77 (87)
T ss_pred EEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEEC----CeECCEECCCCEEEEEEcCCCHH
Confidence 4667777777888999999999999999999999886 3 46788888543 377999999999998 3433
Q ss_pred ccccCceeec
Q 004615 428 DTITGETLCD 437 (742)
Q Consensus 428 ~~~tGdTL~~ 437 (742)
++++|+.||+
T Consensus 78 ~i~~G~vl~~ 87 (87)
T cd03694 78 LLRKGMVLVS 87 (87)
T ss_pred HcCCccEEeC
Confidence 3778888874
No 309
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.27 E-value=4.6e-06 Score=85.93 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=56.5
Q ss_pred eEEEEEcCCCccCc-------------HHHHHHHHH-hhceEEEEEeCCCCCcccH-HHHHHHHHHcCCCeEEEEecccC
Q 004615 120 HRINIIDTPGHVDF-------------TLEVERALR-VLDGAICLFDSVAGVEPQS-ETVWRQADKYGVPRICFVNKMDR 184 (742)
Q Consensus 120 ~~inlIDTPGh~DF-------------~~ev~~al~-~~DgailVVDa~~Gv~~qT-~~v~~~a~~~~ip~il~INK~Dr 184 (742)
-.++||||||..+. ...+..+++ ..+.+++|+||..++..|. .++.+.+...+.|.|+|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 68999999998632 123566677 4569999999999999988 68889999999999999999998
Q ss_pred CCCC
Q 004615 185 LGAN 188 (742)
Q Consensus 185 ~~~~ 188 (742)
....
T Consensus 205 ~~~~ 208 (240)
T smart00053 205 MDEG 208 (240)
T ss_pred CCcc
Confidence 7644
No 310
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.27 E-value=5.2e-06 Score=87.18 Aligned_cols=113 Identities=17% Similarity=0.226 Sum_probs=77.5
Q ss_pred ccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEe-cCeEEEEEcCCCccC-------cHHHHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD-------FTLEVE 138 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~-~~~~inlIDTPGh~D-------F~~ev~ 138 (742)
+-.|+++|-+++||||++..|..-+ .+-||. =.|+....-.+.. .+..|.+-|-||.+. ..-+..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYp------FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FL 232 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYP------FTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFL 232 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCc------cccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHH
Confidence 3468999999999999998886544 666663 2566655555554 566799999999753 122223
Q ss_pred HHHHhhceEEEEEeCCCC----CcccHHHHHHHHHHc-----CCCeEEEEecccCCC
Q 004615 139 RALRVLDGAICLFDSVAG----VEPQSETVWRQADKY-----GVPRICFVNKMDRLG 186 (742)
Q Consensus 139 ~al~~~DgailVVDa~~G----v~~qT~~v~~~a~~~-----~ip~il~INK~Dr~~ 186 (742)
+=+.-|-..+.|||...- +..+-+.++..+.+| +.|.+++.||||...
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 334446788999998742 233445566666554 689999999999654
No 311
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=1e-05 Score=78.25 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=81.1
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceE--EEEe--cCeEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT--TTYW--NKHRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~--~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
=.++++|-...||++++.+.-.++--.++ +-||..... ++.+ ..+++.|+||.|...|..-+-+.+|.+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~Y-------qATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds 95 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 95 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccc-------cceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCC
Confidence 47999999999999988775443222222 234433333 3333 357889999999999999999999999
Q ss_pred ceEEEEEeCCC-CCcccHHHHHHHHHHcCCC----eEEEEecccCCC
Q 004615 145 DGAICLFDSVA-GVEPQSETVWRQADKYGVP----RICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~-Gv~~qT~~v~~~a~~~~ip----~il~INK~Dr~~ 186 (742)
+.||+|.|.+. +--.+|...++-+++++=+ +++|-||-|+..
T Consensus 96 ~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 96 SVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred eEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 99999999765 4456788888877766433 346779999875
No 312
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.17 E-value=1.1e-05 Score=81.73 Aligned_cols=114 Identities=12% Similarity=0.145 Sum_probs=64.2
Q ss_pred CCCccEEEEEeecccCccccccee------------ccCCcc--CCCcHhHHhhcc---eEecceEEE------------
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEV------------HEGTAT--MDWMEQEQERGI---TITSAATTT------------ 115 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v------------~~g~~~--~D~~~~E~erGI---Ti~s~~~~~------------ 115 (742)
...+++|+++|+..+||||.+.++ -.++.. .|....+ +.|. .+....+.+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 457899999999999999844333 112222 2332222 2232 121211111
Q ss_pred -EecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 116 -YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 116 -~~~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
...+..+.||+|.|..-.... .-...+..++|+|+..+...+ .+.....+.|.++++||+|+..
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~~---~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPAD---FDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred hccCCCCEEEEecCCCcCCCcc---cccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHccc
Confidence 002457889999993211110 112346667899998764322 2333445678899999999864
No 313
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.15 E-value=1.1e-05 Score=77.85 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=42.9
Q ss_pred HHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHc--CCCeEEEEecccCCC
Q 004615 136 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 186 (742)
Q Consensus 136 ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~--~ip~il~INK~Dr~~ 186 (742)
++.+++..+|.+++|+|+......+.+.+.+.+... ++|+|+++||+|+..
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC
Confidence 467899999999999999988777787787777653 489999999999853
No 314
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.15 E-value=4.1e-06 Score=85.22 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=80.9
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
..|+++|...+||||++.++-.+.. .++....+..........-. ...+.++||+|+.+|..-+....+.+++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~ 80 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-----PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANG 80 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-----cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCE
Confidence 6899999999999999888765332 22222222222222222222 4669999999999999888888999999
Q ss_pred EEEEEeCCC--CCcccHHHHHHHHHHc---CCCeEEEEecccCCCCC
Q 004615 147 AICLFDSVA--GVEPQSETVWRQADKY---GVPRICFVNKMDRLGAN 188 (742)
Q Consensus 147 ailVVDa~~--Gv~~qT~~v~~~a~~~---~ip~il~INK~Dr~~~~ 188 (742)
+++++|... ....-++.+...+... +.|++++-||+|+....
T Consensus 81 ~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 81 ILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 999999874 4444455555555553 48999999999987643
No 315
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.10 E-value=7.8e-06 Score=83.73 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=77.8
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe-cCeEEEEEcCCCccCcHHH-----HHHHHHh
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTLE-----VERALRV 143 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~-~~~~inlIDTPGh~DF~~e-----v~~al~~ 143 (742)
.|.++|...+|||+...-|-++..--|.+. =|-|++.....+.. .+..+|++|+||+.+|... ...-++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~----L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLR----LEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG---------SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccc----cCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhc
Confidence 478999999999997765544222222222 25688777777765 4569999999999988654 4677899
Q ss_pred hceEEEEEeCCCC-Cccc---HHHHHHHHHHc--CCCeEEEEecccCCCCCh-HHHHHHHHHH
Q 004615 144 LDGAICLFDSVAG-VEPQ---SETVWRQADKY--GVPRICFVNKMDRLGANF-FRTRDMIVTN 199 (742)
Q Consensus 144 ~DgailVVDa~~G-v~~q---T~~v~~~a~~~--~ip~il~INK~Dr~~~~~-~~~~~~i~~~ 199 (742)
+++.|.|+|+... .... -...++.+.+. ++.+-++|+|||....+. ..+.+++.+.
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~ 139 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQR 139 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHH
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHH
Confidence 9999999999832 2211 23344555553 566779999999986553 2334444443
No 316
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=4.1e-05 Score=70.06 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=86.7
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
-.|..+|--.+||+|.+-.+..+..++-. -|+.-+.-++.|++..+|..|..|......-..+....+-|.|
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~~i--------pTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVTTI--------PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCcccc--------cccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 46788899999999988776655432211 2555666778899999999999999998888999999999999
Q ss_pred EEEeCCCC--CcccHHHHHHHH---HHcCCCeEEEEecccCCCCChHHHHHHHHHHh
Q 004615 149 CLFDSVAG--VEPQSETVWRQA---DKYGVPRICFVNKMDRLGANFFRTRDMIVTNL 200 (742)
Q Consensus 149 lVVDa~~G--v~~qT~~v~~~a---~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l 200 (742)
+|+|+... ++.--.++-+.+ .-..+|.+++.||-|++.+- ...+|++.|
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~---~pqei~d~l 143 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM---KPQEIQDKL 143 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc---CHHHHHHHh
Confidence 99998764 222122222222 22467888999999998764 234444444
No 317
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.07 E-value=2e-05 Score=80.03 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=46.7
Q ss_pred CeEEEEEcCCCccC-cH----H-HHHHHHHhh--ceEEEEEeCCCCCcccHHH--HH---HHHHHcCCCeEEEEecccCC
Q 004615 119 KHRINIIDTPGHVD-FT----L-EVERALRVL--DGAICLFDSVAGVEPQSET--VW---RQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 119 ~~~inlIDTPGh~D-F~----~-ev~~al~~~--DgailVVDa~~Gv~~qT~~--v~---~~a~~~~ip~il~INK~Dr~ 185 (742)
.+.+.||||||.+. |+ + -..-+|.-+ -.++.|||....-.+-|-. .+ -.+.+.++|.|++.||.|..
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS 194 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence 46799999999875 31 1 122233322 3667889987665555532 22 33467899999999999988
Q ss_pred CCCh
Q 004615 186 GANF 189 (742)
Q Consensus 186 ~~~~ 189 (742)
..+|
T Consensus 195 d~~f 198 (366)
T KOG1532|consen 195 DSEF 198 (366)
T ss_pred ccHH
Confidence 7654
No 318
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=1.3e-05 Score=76.20 Aligned_cols=115 Identities=14% Similarity=0.142 Sum_probs=84.9
Q ss_pred cEEEEEeecccCcccccceeccCCccC-CC---cHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATM-DW---MEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~-D~---~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
=+|.|.|.=++||++.+=.... .+. ++ .+.+ ---|+.....++...+..++|+|--|.....+-.......|
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt--~~~~~~~~l~~~k--i~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~ 93 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKT--DFSKAYGGLNPSK--ITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLA 93 (197)
T ss_pred hhheeeccccCCchhHHHHHHH--HHHhhhcCCCHHH--eecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHh
Confidence 4788999999999986533211 000 11 1111 12356666677777889999999999988888888888899
Q ss_pred ceEEEEEeCCCC-----CcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 145 DGAICLFDSVAG-----VEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 145 DgailVVDa~~G-----v~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
.++|.||||..- ...+-+.+.++-...|+|+++.+||-|+.++
T Consensus 94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 999999999873 3344566777778899999999999998763
No 319
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.99 E-value=1.6e-05 Score=74.27 Aligned_cols=114 Identities=14% Similarity=0.196 Sum_probs=81.1
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhh--cceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQER--GITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~er--GITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
.-.|-+||..-.||++++=+.-+ |..+++..- |+-.+....++.-+..++.|+||.|...|..-+.+..|.+-
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~-----~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVS-----NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHh-----cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 35789999999999998766433 334444434 34444445555556788999999999999999999999999
Q ss_pred eEEEEEeCCCCCcccHHHHHHH-HHH----cCCCeEEEEecccCCC
Q 004615 146 GAICLFDSVAGVEPQSETVWRQ-ADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~~v~~~-a~~----~~ip~il~INK~Dr~~ 186 (742)
|+|+|-|.+.--.---..+|.+ +.. .++-.++|-||+|+..
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 9999999876433333345533 222 3555678999999764
No 320
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=7.4e-05 Score=68.94 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=73.6
Q ss_pred EEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe--cCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
.+.|+|+...||++.+-+-.+.+-..-+ =+.-||-.+.. ++.. +..++.++||.|...+..-+....|.++|.
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~af---vsTvGidFKvK--Tvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAF---VSTVGIDFKVK--TVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccce---eeeeeeeEEEe--EeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 6889999999999977554332111100 00123333322 3332 345678999999999988888899999999
Q ss_pred EEEEeCCCCCcccHHHHH-HHHH---HcCCCeEEEEecccCCCC
Q 004615 148 ICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~-~~a~---~~~ip~il~INK~Dr~~~ 187 (742)
||+.|.+.--.-....-| -|.+ ..+.|+|++-||+|....
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc
Confidence 999998764222222222 2222 357999999999997653
No 321
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=4.4e-05 Score=73.47 Aligned_cols=113 Identities=17% Similarity=0.151 Sum_probs=74.7
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecce--EEEEecCeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAA--TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~--~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
-.+.++|..-.||+.++-+..+..-..++. --|-+.-.+ +++.-+..+++++||.||..|-.-+.+..|.+-|
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd-----~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-----LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcccccc-----ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 457899999999998776655433222221 012222222 3333345678999999999999999999999999
Q ss_pred EEEEEeCCCCCcccHHHHH-HHHHH---cCCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT~~v~-~~a~~---~~ip~il~INK~Dr~~ 186 (742)
||||-|.+.--.-.-.+.| .-+++ .++.++++-||.|+..
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc
Confidence 9999998753322222222 33443 4666778889999865
No 322
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.93 E-value=8.9e-05 Score=63.65 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=59.5
Q ss_pred EEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCC---ceEecceEEEeecCceeecccccCCCEEEE--cCCCcccc
Q 004615 357 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 431 (742)
Q Consensus 357 ~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~---~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~~~~t 431 (742)
+.|..++.....|.++.+||.+|+|++|+.+...+.+ .+.+|.+|... ...+++|.+|+-|+| .+.++++.
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~~~~d~~~ 78 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF----KDDVKEVKKGYECGITLENFNDIKV 78 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc----CcccCEECCCCEEEEEEeCcccCCC
Confidence 3445555445668999999999999999999999888 45577777644 377999999999998 46667889
Q ss_pred Ccee
Q 004615 432 GETL 435 (742)
Q Consensus 432 GdTL 435 (742)
||+|
T Consensus 79 Gdvi 82 (84)
T cd03692 79 GDII 82 (84)
T ss_pred CCEE
Confidence 9986
No 323
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.93 E-value=0.00011 Score=76.88 Aligned_cols=114 Identities=15% Similarity=0.249 Sum_probs=83.1
Q ss_pred CCccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc-------HHHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEV 137 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF-------~~ev 137 (742)
+..-.++++|.++.|||+++..+..-+ .+-|+- =.|...-.--+.|++.+|.|+|+||.+.= ..++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~------FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~v 134 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYP------FTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQV 134 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccC------ceecccccceEeecCceEEEEcCcccccCcccCCCCccee
Confidence 345689999999999999998876532 222331 15666677788999999999999997642 3678
Q ss_pred HHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCC-----CeEEEEecccCCC
Q 004615 138 ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-----PRICFVNKMDRLG 186 (742)
Q Consensus 138 ~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~i-----p~il~INK~Dr~~ 186 (742)
.+..|.||.+++|+|+.+... +-+.+.+.+...|+ |+=+.|.|-++-+
T Consensus 135 lsv~R~ADlIiiVld~~~~~~-~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gG 187 (365)
T COG1163 135 LSVARNADLIIIVLDVFEDPH-HRDIIERELEDVGIRLNKRPPDVTIKKKESGG 187 (365)
T ss_pred eeeeccCCEEEEEEecCCChh-HHHHHHHHHHhcCeEecCCCCceEEEEeccCC
Confidence 999999999999999987643 24456666666553 5556666655543
No 324
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.90 E-value=0.00029 Score=76.67 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=60.1
Q ss_pred cEEEEEeecccCcccccceeccCCc-cCCCcHhHHhhcceEecceEEEEecC-----------------eEEEEEcCCCc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTA-TMDWMEQEQERGITITSAATTTYWNK-----------------HRINIIDTPGH 130 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~-~~D~~~~E~erGITi~s~~~~~~~~~-----------------~~inlIDTPGh 130 (742)
..|+++|.+++||||+...+...+. +.++ .+.|++.....+.+.+ .++.|+||||.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL 76 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGL 76 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccc------ccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCC
Confidence 4799999999999998887765442 2233 5677777766666554 35999999996
Q ss_pred cC-------cHHHHHHHHHhhceEEEEEeCC
Q 004615 131 VD-------FTLEVERALRVLDGAICLFDSV 154 (742)
Q Consensus 131 ~D-------F~~ev~~al~~~DgailVVDa~ 154 (742)
.+ ........++.+|+++.|||+.
T Consensus 77 ~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 77 VKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 54 3345677789999999999995
No 325
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.88 E-value=4.5e-05 Score=74.77 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=44.7
Q ss_pred CCCcc-CcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 127 TPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 127 TPGh~-DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
=|||. .-..++..++..+|.+++|+|+.++.......++... .+.|+++++||+|..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 37774 3457788899999999999999987766666655543 368999999999975
No 326
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.87 E-value=4.3e-05 Score=80.98 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=45.6
Q ss_pred CCccC-cHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 128 PGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 128 PGh~D-F~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
|||.. ...++...+..+|.+|+|+||..........+.+.+ .+.|+|+++||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 88863 567889999999999999999887776666665554 368999999999974
No 327
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.87 E-value=0.0002 Score=71.72 Aligned_cols=112 Identities=20% Similarity=0.201 Sum_probs=77.7
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEec---ceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITS---AATTTYWNKHRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s---~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
..+|+++|....||+++.-..-.+.-.-++.+ ||.. ....+.-....+.++||+|..+|...-...++..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~p-------tied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~ 75 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDP-------TIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNG 75 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCC-------CccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccC
Confidence 35899999999999997766555443333332 2221 1112222345677999999999999999999999
Q ss_pred ceEEEEEeCCCCCccc-HHHHHHHH----HHcCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~q-T~~v~~~a----~~~~ip~il~INK~Dr~~ 186 (742)
||-++|.+.++--.-+ ...++.++ ....+|++++-||.|+..
T Consensus 76 ~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 76 DGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 9999999988643222 23334444 235689999999999865
No 328
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.86 E-value=0.00013 Score=77.32 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=73.3
Q ss_pred CCccEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH---HHHHHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT---LEVERA 140 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~---~ev~~a 140 (742)
.+..+|+++|....|||+.++++-... .+.++ . +-|......+..++++++++|||||..|.. .+....
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~-----s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-Q-----SEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-C-----CcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHH
Confidence 356799999999999999888876432 12222 1 123333345566789999999999988752 223333
Q ss_pred HH------hhceEEEEEeCCC-CCcccHHHHHHHHHH-cC----CCeEEEEecccCC
Q 004615 141 LR------VLDGAICLFDSVA-GVEPQSETVWRQADK-YG----VPRICFVNKMDRL 185 (742)
Q Consensus 141 l~------~~DgailVVDa~~-Gv~~qT~~v~~~a~~-~~----ip~il~INK~Dr~ 185 (742)
++ ..|.+|+|..... ......+.+++.... +| .+.|+++++.|..
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 33 3788888844321 244444555555443 22 4679999999976
No 329
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.86 E-value=5.5e-05 Score=75.41 Aligned_cols=57 Identities=14% Similarity=-0.085 Sum_probs=42.6
Q ss_pred CCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 128 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 128 PGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
|.+..|...+...++.+|++++|+|+.+........++. ...+.|+++++||+|+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLP 75 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCC
Confidence 444447888888899999999999998755444444432 235789999999999864
No 330
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.86 E-value=9.4e-05 Score=79.38 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=42.6
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 188 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~ 188 (742)
.++.+.||||||.-.- + ...+..+|.++++.+...|-+-|. +. .. -.++|.++++||+|+...+
T Consensus 125 ~g~D~viidT~G~~~~--e-~~i~~~aD~i~vv~~~~~~~el~~--~~-~~-l~~~~~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 125 AGYDVIIVETVGVGQS--E-VDIANMADTFVVVTIPGTGDDLQG--IK-AG-LMEIADIYVVNKADGEGAT 188 (300)
T ss_pred CCCCEEEEeCCCCchh--h-hHHHHhhceEEEEecCCccHHHHH--HH-HH-HhhhccEEEEEcccccchh
Confidence 4799999999996532 2 235778899998876544322111 11 11 2468889999999987643
No 331
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=6e-05 Score=74.08 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=81.4
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe--cCeEEEEEcCCCccCcHHHHHHHHHhhce
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDFTLEVERALRVLDG 146 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~--~~~~inlIDTPGh~DF~~ev~~al~~~Dg 146 (742)
-.|+++|.+.-||+.++-+.....-.+|+. --|-+.-+.-++.. +-.+..|+||.|...|..-..+..|.+-|
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~Sk-----sTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESK-----STIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccc-----cceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 459999999999999887766544444442 22333333333333 44567899999999999888888899999
Q ss_pred EEEEEeCCCCCcccH-HHHHHHHHHc---CCCeEEEEecccCCC
Q 004615 147 AICLFDSVAGVEPQS-ETVWRQADKY---GVPRICFVNKMDRLG 186 (742)
Q Consensus 147 ailVVDa~~Gv~~qT-~~v~~~a~~~---~ip~il~INK~Dr~~ 186 (742)
|++|-|.+....-+- .+.+++++.+ +++++++-||.|+..
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 999999987654443 3445666654 688899999999764
No 332
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.75 E-value=8.1e-05 Score=71.68 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=34.5
Q ss_pred ceEEEEEeCCCCCcccHHHHH-HHHHHcCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVW-RQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~-~~a~~~~ip~il~INK~Dr~~ 186 (742)
|.+|+|+|+.+....+...+. ..+...++|+|+++||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC
Confidence 789999999887777766665 466778899999999999753
No 333
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=7.4e-05 Score=82.18 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=92.6
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
-.++++|++.+||+|++.++-. .++-+.-.|..--||+-++ +..+|+|+.|| .| ...++-....+|.+|
T Consensus 70 fIvavvGPpGtGKsTLirSlVr--r~tk~ti~~i~GPiTvvsg------K~RRiTflEcp--~D-l~~miDvaKIaDLVl 138 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVR--RFTKQTIDEIRGPITVVSG------KTRRITFLECP--SD-LHQMIDVAKIADLVL 138 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHH--HHHHhhhhccCCceEEeec------ceeEEEEEeCh--HH-HHHHHhHHHhhheeE
Confidence 4677999999999998877644 3333333344334666554 56899999999 34 456777889999999
Q ss_pred EEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCCCChHHHHHHHHHHhCC
Q 004615 149 CLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGA 202 (742)
Q Consensus 149 lVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~~~~~~~~i~~~l~~ 202 (742)
|+||+.-|.+-.|.+.+..+..+|+|++ -|++-+|+... ..++.+++++|..
T Consensus 139 LlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkh 191 (1077)
T COG5192 139 LLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKH 191 (1077)
T ss_pred EEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHhh
Confidence 9999999999999999999999999997 58899997642 3456666665543
No 334
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.70 E-value=0.00012 Score=70.51 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=80.5
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe--cC--eEEEEEcCCCccCcHHHHHHHHHh
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NK--HRINIIDTPGHVDFTLEVERALRV 143 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~--~~--~~inlIDTPGh~DF~~ev~~al~~ 143 (742)
.-.|.|.|.+-.||++++...-. .+=.++...||..-..+=++ ++ ..+.++||.|...|..--..-.|.
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~-------~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRg 81 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVN-------KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRG 81 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH-------HHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecC
Confidence 46899999999999998865322 12234455666555443332 33 566799999999998877888899
Q ss_pred hceEEEEEeCCCCCcccHHHHHHH-----HHH---cCCCeEEEEecccCCC
Q 004615 144 LDGAICLFDSVAGVEPQSETVWRQ-----ADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 144 ~DgailVVDa~~Gv~~qT~~v~~~-----a~~---~~ip~il~INK~Dr~~ 186 (742)
+|++++|.|...--.-.+...||. |.- ...|.|++-||+|..+
T Consensus 82 aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 82 ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 999999999876555566666653 331 4578999999999865
No 335
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.68 E-value=0.00028 Score=72.97 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=36.6
Q ss_pred EEEEEcCCCccCcHHHH------HHHHH--hhceEEEEEeCCCCCcccHH-HH----HHHHHHcCCCeEEEEecccCCCC
Q 004615 121 RINIIDTPGHVDFTLEV------ERALR--VLDGAICLFDSVAGVEPQSE-TV----WRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 121 ~inlIDTPGh~DF~~ev------~~al~--~~DgailVVDa~~Gv~~qT~-~v----~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
.+.|+||||...|..-. ...|. ..=++|+++|+.-=-.+.+- .. +....+.++|.|.++||+|....
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 79999999998764322 22222 22378899998753222221 11 12234579999999999998874
Q ss_pred C
Q 004615 188 N 188 (742)
Q Consensus 188 ~ 188 (742)
.
T Consensus 172 ~ 172 (238)
T PF03029_consen 172 Y 172 (238)
T ss_dssp H
T ss_pred h
Confidence 4
No 336
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.66 E-value=0.00022 Score=65.50 Aligned_cols=111 Identities=20% Similarity=0.245 Sum_probs=76.7
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecC-eEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~-~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
.+|...|--++||+|.+..+..- |-...-+..|. +..++.+.+ +++|++|..|..-..+-+.......|+.
T Consensus 18 irilllGldnAGKTT~LKqL~sE----D~~hltpT~GF----n~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSE----DPRHLTPTNGF----NTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccC----ChhhccccCCc----ceEEEeecCcEEEEEEecCCccccchhhhhhhhccceE
Confidence 57888999999999977554321 11111112233 345566665 9999999999988888888889999999
Q ss_pred EEEEeCCCCC--cccHHHHHHHH---HHcCCCeEEEEecccCCCC
Q 004615 148 ICLFDSVAGV--EPQSETVWRQA---DKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 148 ilVVDa~~Gv--~~qT~~v~~~a---~~~~ip~il~INK~Dr~~~ 187 (742)
|+|||..+-- +.-.+++.+.. +...+|+.+|-||-|++-+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 9999977531 22223333333 3456899999999998753
No 337
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00019 Score=66.50 Aligned_cols=116 Identities=21% Similarity=0.195 Sum_probs=80.5
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
-.+.++|...+||+.++...-..++--|.. ..-|+-..+..+++--+..++.++||.|...|..-.....|.+-||+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdss---HTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSS---HTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhccccc---ceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 468899999999998776643322221221 11345555556666666788999999999999999999999999999
Q ss_pred EEEeCCCCCcccHHHHH-HHHH---HcCCCeEEEEecccCCCC
Q 004615 149 CLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 149 lVVDa~~Gv~~qT~~v~-~~a~---~~~ip~il~INK~Dr~~~ 187 (742)
||-|++.--.-...+-| .-++ ..++-+|++-||-|+...
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 99999865444444444 2333 345555677799997653
No 338
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.59 E-value=0.00011 Score=71.52 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=46.5
Q ss_pred CeEEEEEcCCCccCcH----HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHc-CCCeEEEEecc
Q 004615 119 KHRINIIDTPGHVDFT----LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKM 182 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~----~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~-~ip~il~INK~ 182 (742)
...+.||||||..+.. .-+...+..+|.+|+|+++......+...-|.+.... +-..++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4569999999986532 3467778999999999999987776665556555554 44456777885
No 339
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0002 Score=64.64 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=61.4
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCC----ccCcHHHHHHHHHhh
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG----HVDFTLEVERALRVL 144 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPG----h~DF~~ev~~al~~~ 144 (742)
.+|+++|.+-.||+++..++..-.+.- -+..+ ++|+++ -.||||| |..+-.-....+..+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly------------kKTQA--ve~~d~--~~IDTPGEy~~~~~~Y~aL~tt~~da 65 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY------------KKTQA--VEFNDK--GDIDTPGEYFEHPRWYHALITTLQDA 65 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh------------cccce--eeccCc--cccCCchhhhhhhHHHHHHHHHhhcc
Confidence 478999999999999876654321111 11222 234332 2589999 333334445556678
Q ss_pred ceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 145 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
|..++|-.+.++.+.-. -..+.-...|+|-+|+|.|+.
T Consensus 66 dvi~~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 66 DVIIYVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred ceeeeeecccCccccCC---cccccccccceEEEEeccccc
Confidence 99999999888633221 122233456789999999987
No 340
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.55 E-value=5.5e-05 Score=70.53 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=72.1
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecc----eEEEEecCeEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSA----ATTTYWNKHRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~----~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
=.|+++|....||++++=+--. +.+.+. +=.|++.+ ..++.-....++++||.|...|..-=--..|.+
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~E-nkFn~k------HlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVE-NKFNCK------HLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHH-hhcchh------hHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 3588899999999986533211 011111 11233332 223333446789999999988865555556899
Q ss_pred ceEEEEEeCCCCCcccHHHHH----HHHHHcCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVW----RQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~----~~a~~~~ip~il~INK~Dr~~ 186 (742)
|||+||.|.++--.-|-..-| +++.-..+-.++|-||+|+..
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe 132 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE 132 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH
Confidence 999999999987666665555 333444566788899999754
No 341
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.51 E-value=0.0004 Score=65.77 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=46.6
Q ss_pred HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHc--CCCeEEEEecccCCC
Q 004615 135 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 186 (742)
Q Consensus 135 ~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~--~ip~il~INK~Dr~~ 186 (742)
.++.+++..+|.+++|+|+..+...+...+.+.+.+. ++|+++++||+|+..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC
Confidence 5788999999999999999999888888888888776 899999999999854
No 342
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.51 E-value=0.00024 Score=75.69 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=45.2
Q ss_pred CCCccC-cHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 127 TPGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 127 TPGh~D-F~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
=|||.. =..++...+..+|.+|+|+|+......+...+.+... +.|+++++||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 478854 2467888999999999999999887777666555443 78999999999974
No 343
>PTZ00258 GTP-binding protein; Provisional
Probab=97.51 E-value=0.00018 Score=79.05 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=63.3
Q ss_pred CccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecC-----------------eEEEEEcCC
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNK-----------------HRINIIDTP 128 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~-----------------~~inlIDTP 128 (742)
+-..|+|+|.+++||||++..+...+ .+.++ .+.|++.....+.+.+ .+|.|+|||
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~------pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp 93 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENF------PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA 93 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCC------CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence 44579999999999999988884433 33344 5778888888887764 359999999
Q ss_pred CccC-------cHHHHHHHHHhhceEEEEEeCC
Q 004615 129 GHVD-------FTLEVERALRVLDGAICLFDSV 154 (742)
Q Consensus 129 Gh~D-------F~~ev~~al~~~DgailVVDa~ 154 (742)
|.+. ........++.+|++++|||+.
T Consensus 94 GLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 94 GLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 9653 3446677889999999999985
No 344
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.47 E-value=0.00015 Score=76.37 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=59.6
Q ss_pred EEEEeecccCcccccceeccCCc-cCCCcHhHHhhcceEecceEEEEecCe-----------------EEEEEcCCCccC
Q 004615 71 FSVFAMAAEGRNYKIGEVHEGTA-TMDWMEQEQERGITITSAATTTYWNKH-----------------RINIIDTPGHVD 132 (742)
Q Consensus 71 i~iiGh~~~Gk~~~~g~v~~g~~-~~D~~~~E~erGITi~s~~~~~~~~~~-----------------~inlIDTPGh~D 132 (742)
|+|+|.+++||||+...+...+. +.++ -+.|++.....+.+.+. .|.|+||||..+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~ 74 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANY------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVK 74 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccc------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCC
Confidence 58999999999998888765442 2222 46777777766776553 599999999653
Q ss_pred -------cHHHHHHHHHhhceEEEEEeCCC
Q 004615 133 -------FTLEVERALRVLDGAICLFDSVA 155 (742)
Q Consensus 133 -------F~~ev~~al~~~DgailVVDa~~ 155 (742)
+.......++.+|+.+.|||+.+
T Consensus 75 ~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 75 GASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 33456777899999999999864
No 345
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0017 Score=60.15 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=75.8
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecc--eEEEEecC--eEEEEEcCCCccCcHHHHHHHHHhh
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSA--ATTTYWNK--HRINIIDTPGHVDFTLEVERALRVL 144 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~--~~~~~~~~--~~inlIDTPGh~DF~~ev~~al~~~ 144 (742)
-.|+++|+...||+.++.+...|- .|-- .|-||... .-+++.++ .++.++||.|...|.+-+.+..|.+
T Consensus 8 fkivlvgnagvgktclvrrftqgl-----fppg--qgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGL-----FPPG--QGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccC-----CCCC--CCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 368999999999998876665542 1111 23333322 23444444 5678999999999999999999999
Q ss_pred ceEEEEEeCCCCCcccHH-HHHHHHHH---cCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~-~v~~~a~~---~~ip~il~INK~Dr~~ 186 (742)
...|+|-|...-..-.-. +.++.... .++-.|+|-||+|+..
T Consensus 81 halilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 999999998764433322 23344433 3455578999999754
No 346
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.39 E-value=0.0012 Score=57.95 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=62.9
Q ss_pred EEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCcc-ccCce
Q 004615 356 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGET 434 (742)
Q Consensus 356 ~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~~-~tGdT 434 (742)
.++|.....+++.|.++.+-|.+|+|++||.+...... .||+.|+-..| .++++|.||+.|-|.|++++ ..||.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTY--GKVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccc--cEEEEEECCCC---CCCCEECCCCcEEEcCCCCCCCCCCE
Confidence 46788888899999999999999999999999876432 26666654444 67999999999999999886 77887
Q ss_pred eec
Q 004615 435 LCD 437 (742)
Q Consensus 435 L~~ 437 (742)
+..
T Consensus 77 ~~~ 79 (95)
T cd03702 77 FLV 79 (95)
T ss_pred EEE
Confidence 753
No 347
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.39 E-value=0.00069 Score=66.76 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=57.8
Q ss_pred ecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 117 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 117 ~~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
++.|.+.+||||+... ..+..++..+|.+++++.....-...+.++++.+++.++|..+++||+|....
T Consensus 90 ~~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 90 AEGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE 158 (179)
T ss_pred hcCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc
Confidence 4689999999997643 46778899999999999988665566788899999999999999999997543
No 348
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.36 E-value=0.0007 Score=69.48 Aligned_cols=116 Identities=15% Similarity=0.189 Sum_probs=85.9
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCc----------cCcHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----------VDFTL 135 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh----------~DF~~ 135 (742)
.+.+.+++.|..|-||++++...-.-....|.-.- . +-+...+.+..-+..+.++|.||+ .||..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~--K---~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS--K---NGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC--C---CccceeeeeeeccceEEEEecCCcccccCCccCcchHhH
Confidence 45689999999999999988765433323332111 2 233446667777889999999992 34544
Q ss_pred HHHHHHH---hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 136 EVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 136 ev~~al~---~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
-+...+- ..=.+.++||+.-++++-+-..+..+-+.++|..++.||||+..
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh
Confidence 4444442 34467889999999999999999999999999999999999864
No 349
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.33 E-value=0.0009 Score=61.95 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=74.7
Q ss_pred EEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec--CeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 71 FSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 71 i~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~--~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
..|+|.+..||++++=+..+. ++.-+- ---|-++...-++..+ ..++.++||.|...|..-.....|...|++
T Consensus 11 llIigDsgVGKssLl~rF~dd-tFs~sY----itTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADD-TFSGSY----ITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHeecCCcccHHHHHHHHhhc-ccccce----EEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 468898999999877665442 221110 0012222233333333 467889999999999988888899999999
Q ss_pred EEEeCCCCCcccH-HHHHHHHHHc--CCCeEEEEecccCCC
Q 004615 149 CLFDSVAGVEPQS-ETVWRQADKY--GVPRICFVNKMDRLG 186 (742)
Q Consensus 149 lVVDa~~Gv~~qT-~~v~~~a~~~--~ip~il~INK~Dr~~ 186 (742)
+|-|.+.|-.-.. .+.++.++.. .+|.++|-||.|.++
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 9999998854433 3444444432 478899999999765
No 350
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.00041 Score=65.66 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=84.7
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEE
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI 148 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dgai 148 (742)
-.+.+.|-=|+||+|++.-+.+ |.+.+ .--|...+.-.+...+.+++-+|--||.-=..-....+-.+|++|
T Consensus 21 gKllFlGLDNAGKTTLLHMLKd-----Drl~q---hvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKD-----DRLGQ---HVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ceEEEEeecCCchhhHHHHHcc-----ccccc---cCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 4788999999999998877755 22111 113555666666778999999999999765555666777899999
Q ss_pred EEEeCCCCCccc-HHHH----HHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhC
Q 004615 149 CLFDSVAGVEPQ-SETV----WRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLG 201 (742)
Q Consensus 149 lVVDa~~Gv~~q-T~~v----~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~ 201 (742)
.+|||.+--.-| .+.. +....-.++|.++..||+|++++- ..++++.+++
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~---se~~l~~~l~ 147 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA---SEDELRFHLG 147 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc---cHHHHHHHHH
Confidence 999997632222 2222 222223679999999999999865 3445555543
No 351
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.31 E-value=0.0015 Score=66.53 Aligned_cols=116 Identities=14% Similarity=0.214 Sum_probs=74.3
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc-------HHHHHHHH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEVERAL 141 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF-------~~ev~~al 141 (742)
.+|.++|...+|||+..+.+-..+. ... .-.....|......+..+.+..|++|||||.-|- ..++.+++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~-f~~--~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEV-FKS--GSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS--SS----TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc-eee--ccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 3799999999999998776643322 111 1112346666777777899999999999997552 23445554
Q ss_pred Hh----hceEEEEEeCCCCCcccHHHHHHHHHH-cCC----CeEEEEecccCCCCC
Q 004615 142 RV----LDGAICLFDSVAGVEPQSETVWRQADK-YGV----PRICFVNKMDRLGAN 188 (742)
Q Consensus 142 ~~----~DgailVVDa~~Gv~~qT~~v~~~a~~-~~i----p~il~INK~Dr~~~~ 188 (742)
.. .++.|+|+... ......+.+++...+ +|- -.|++++..|....+
T Consensus 78 ~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp HHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred HhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 43 58899999988 677777777776654 332 257778888876543
No 352
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.27 E-value=0.00079 Score=61.08 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=74.4
Q ss_pred EEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEe
Q 004615 73 VFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFD 152 (742)
Q Consensus 73 iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVD 152 (742)
++|...+||+.++-+..+|.-+-...-. .-||......+...-+..++.++||.|...|.+-+.+..|.+|..+++-|
T Consensus 2 llgds~~gktcllir~kdgafl~~~fis--tvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllyd 79 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFIS--TVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYD 79 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceee--eeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeee
Confidence 4688889999888777776422111100 02333333333333345678999999999999999999999999999999
Q ss_pred CCCCCccc-HHHHHHHHHHc---CCCeEEEEecccCCC
Q 004615 153 SVAGVEPQ-SETVWRQADKY---GVPRICFVNKMDRLG 186 (742)
Q Consensus 153 a~~Gv~~q-T~~v~~~a~~~---~ip~il~INK~Dr~~ 186 (742)
...--.-. -+..+.+..++ .+...++-||+|...
T Consensus 80 iankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch
Confidence 77543332 23344455544 356678899999754
No 353
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.18 E-value=0.00051 Score=70.54 Aligned_cols=112 Identities=24% Similarity=0.286 Sum_probs=66.4
Q ss_pred ccEEEEEeecccCcccccceec-----c-----------------CCccCCCcH---hHHhhcceEecceEEEEe-----
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVH-----E-----------------GTATMDWME---QEQERGITITSAATTTYW----- 117 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~-----~-----------------g~~~~D~~~---~E~erGITi~s~~~~~~~----- 117 (742)
-..|+|.|.+-+||||++..+- . |.-+-|... .....|+=|.|.+..=..
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~ 108 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR 108 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence 4689999999999998554331 1 222223321 223346666665554333
Q ss_pred -----------cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHH--HHHHHHHcCCCeEEEEecccC
Q 004615 118 -----------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKYGVPRICFVNKMDR 184 (742)
Q Consensus 118 -----------~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~--v~~~a~~~~ip~il~INK~Dr 184 (742)
-+|.+.||-|-|--. .|+. -...+|..++|+-...|-+.|..+ +++ +.=|+||||.|+
T Consensus 109 ~t~~~v~ll~aaG~D~IiiETVGvGQ--sE~~-I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------iaDi~vVNKaD~ 179 (266)
T PF03308_consen 109 ATRDAVRLLDAAGFDVIIIETVGVGQ--SEVD-IADMADTVVLVLVPGLGDEIQAIKAGIME------IADIFVVNKADR 179 (266)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEESSST--HHHH-HHTTSSEEEEEEESSTCCCCCTB-TTHHH------H-SEEEEE--SH
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCc--cHHH-HHHhcCeEEEEecCCCccHHHHHhhhhhh------hccEEEEeCCCh
Confidence 368999999998532 2332 257899999999998887777643 333 345899999997
Q ss_pred CCCC
Q 004615 185 LGAN 188 (742)
Q Consensus 185 ~~~~ 188 (742)
.+++
T Consensus 180 ~gA~ 183 (266)
T PF03308_consen 180 PGAD 183 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 354
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.18 E-value=0.0037 Score=55.72 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=54.0
Q ss_pred CCCCeEEEEEEEEecC--------CCceEEEEEEEeeEecCCCEEEeCC------CC------ceEecceEEEeecCcee
Q 004615 351 DDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNAN------KG------KKERIGRLLEMHANSRE 410 (742)
Q Consensus 351 ~~~p~~~~V~k~~~~~--------~~G~l~~~RV~sG~L~~gd~v~~~~------~~------~~~kV~~l~~~~g~~~~ 410 (742)
.+.|+.|+|.++|... .+|.++-+++.+|.|+.||+|-+-+ .+ ...+|.+|+.. ..
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~----~~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAE----NN 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEec----Cc
Confidence 3678889999988654 6789999999999999999996531 11 12345555422 26
Q ss_pred ecccccCCCEEEE-cCCC
Q 004615 411 DVKVALAGDIIAL-AGLK 427 (742)
Q Consensus 411 ~v~~a~aGdIv~I-~gl~ 427 (742)
.+++|.||+.++| ++|+
T Consensus 78 ~l~~a~pGgliGvgT~Ld 95 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLD 95 (113)
T ss_pred cccEEeCCCeEEEccccC
Confidence 7999999999999 4554
No 355
>PRK12289 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.0016 Score=71.12 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=36.1
Q ss_pred HHHhhceEEEEEeCCCCC-cc-cHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 140 ALRVLDGAICLFDSVAGV-EP-QSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 140 al~~~DgailVVDa~~Gv-~~-qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
+++.+|.+++|+|+.+.- .. +..+.+..+...++|+|+++||+|+.
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 478899999999997532 33 33556667777899999999999985
No 356
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.08 E-value=0.0033 Score=61.55 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=66.8
Q ss_pred EEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCCCCChHHHHHHHHHH
Q 004615 121 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTN 199 (742)
Q Consensus 121 ~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~~~~~~~~i~~~ 199 (742)
.+.+||||+..+. ....++..+|.+|++++....-...+...++.+.+.+.+. .+++|++|.......+.++.+.+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 6999999987554 5778899999999999998776667777778877777765 489999997655555567788888
Q ss_pred hCCcceEEEec
Q 004615 200 LGAKPLVVQLP 210 (742)
Q Consensus 200 l~~~~~~~~~P 210 (742)
++.... -.+|
T Consensus 142 ~~~~v~-~~Ip 151 (179)
T cd02036 142 LGVPLL-GVIP 151 (179)
T ss_pred hCCCEE-EEec
Confidence 876533 3455
No 357
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.06 E-value=0.0031 Score=69.57 Aligned_cols=113 Identities=21% Similarity=0.297 Sum_probs=71.3
Q ss_pred CCccEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecc-eEEEEecCeEEEEEcCCCccCc------HHH-
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSA-ATTTYWNKHRINIIDTPGHVDF------TLE- 136 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~-~~~~~~~~~~inlIDTPGh~DF------~~e- 136 (742)
.+.|...++|-+|.||++.+..+..++ -+-.| -.|-++- .-.+.|+-.++..|||||..|= +-|
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpY-------aFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEm 238 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPY-------AFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEM 238 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCc-------ccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHH
Confidence 367999999999999999888776654 22222 1222222 2345556678999999998764 222
Q ss_pred -HHHHHHhh-ceEEEEEeCCC--C--CcccHHHHHHHHHH--cCCCeEEEEecccCCC
Q 004615 137 -VERALRVL-DGAICLFDSVA--G--VEPQSETVWRQADK--YGVPRICFVNKMDRLG 186 (742)
Q Consensus 137 -v~~al~~~-DgailVVDa~~--G--v~~qT~~v~~~a~~--~~ip~il~INK~Dr~~ 186 (742)
.+.||.-. -+++++.|-++ | +..|-. +++-.+- .+.|.|+|+||+|...
T Consensus 239 qsITALAHLraaVLYfmDLSe~CGySva~Qvk-LfhsIKpLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 239 QIITALAHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKPLFANKVTILVLNKIDAMR 295 (620)
T ss_pred HHHHHHHHhhhhheeeeechhhhCCCHHHHHH-HHHHhHHHhcCCceEEEeecccccC
Confidence 34555544 35677788654 2 222321 2232222 4789999999999876
No 358
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.04 E-value=0.001 Score=70.15 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.5
Q ss_pred ceeeeeccccCCCChHHHHHHHHH
Q 004615 299 FVPVLCGSAFKNKGVQPLLDAVVD 322 (742)
Q Consensus 299 ~~Pv~~~Sa~~~~gv~~LLd~I~~ 322 (742)
..||+..||++|.|++.|+++|..
T Consensus 263 ~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 263 EIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999975
No 359
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.00093 Score=73.17 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=78.9
Q ss_pred CccEEEEEeecccCcccccceec------cC-C----ccCCCc---HhHHhh------cceEecceEE-------EEecC
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVH------EG-T----ATMDWM---EQEQER------GITITSAATT-------TYWNK 119 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~------~g-~----~~~D~~---~~E~er------GITi~s~~~~-------~~~~~ 119 (742)
+-.+++++|..-+||||.+..+. .| . ..+|.. ..|+-+ |+.+...... -.|.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34799999999999998544331 23 1 223332 234433 5555433222 12367
Q ss_pred eEEEEEcCCCcc---CcHHHHHHHHHhhce---EEEEEeCCCCCcccHHHHHHHHHHcCCCe-------EEEEecccCC
Q 004615 120 HRINIIDTPGHV---DFTLEVERALRVLDG---AICLFDSVAGVEPQSETVWRQADKYGVPR-------ICFVNKMDRL 185 (742)
Q Consensus 120 ~~inlIDTPGh~---DF~~ev~~al~~~Dg---ailVVDa~~Gv~~qT~~v~~~a~~~~ip~-------il~INK~Dr~ 185 (742)
+.+.||||||.. ++..+....+..++. .+||++|+.|...-++.+++.....++|. =++++|+|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 899999999976 455566666665554 49999999998887887887777655543 3778999954
No 360
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.02 E-value=0.0059 Score=65.40 Aligned_cols=143 Identities=18% Similarity=0.233 Sum_probs=94.8
Q ss_pred cEEEEEeecccCcccccceeccC----CccCCCcHhH-HhhcceEecceEEEEecCe--EEEEEcCCCccCcHHH-----
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEG----TATMDWMEQE-QERGITITSAATTTYWNKH--RINIIDTPGHVDFTLE----- 136 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g----~~~~D~~~~E-~erGITi~s~~~~~~~~~~--~inlIDTPGh~DF~~e----- 136 (742)
-||-++|...+||+|.+..+-.. ++..|-...+ .+.++.|......+.-++. .+|+|||||+-||...
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we 103 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWE 103 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHH
Confidence 58999999999999977766332 1111222222 5567777777777776664 6789999999887321
Q ss_pred ---------HHHHHH-------h-------hceEEEEEeC-CCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCC-hHH
Q 004615 137 ---------VERALR-------V-------LDGAICLFDS-VAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-FFR 191 (742)
Q Consensus 137 ---------v~~al~-------~-------~DgailVVDa-~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~-~~~ 191 (742)
-...|+ . .++||..|-. ..|+.++..+.++.+.+. +-+|-||-|.|....+ +..
T Consensus 104 ~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlIPVI~KaD~lT~~El~~ 182 (373)
T COG5019 104 PIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLIPVIAKADTLTDDELAE 182 (373)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCeeeeeeccccCCHHHHHH
Confidence 111121 1 4789999985 468999998888776553 7788899999988644 445
Q ss_pred HHHHHHHHhCCcceEEEeccC
Q 004615 192 TRDMIVTNLGAKPLVVQLPVG 212 (742)
Q Consensus 192 ~~~~i~~~l~~~~~~~~~Pi~ 212 (742)
.-+.|++-+...-++++-|..
T Consensus 183 ~K~~I~~~i~~~nI~vf~pyd 203 (373)
T COG5019 183 FKERIREDLEQYNIPVFDPYD 203 (373)
T ss_pred HHHHHHHHHHHhCCceeCCCC
Confidence 555555555444444444643
No 361
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.98 E-value=0.0026 Score=67.77 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=35.7
Q ss_pred HHhhceEEEEEeCCCCC-cc-cHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 141 LRVLDGAICLFDSVAGV-EP-QSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 141 l~~~DgailVVDa~~Gv-~~-qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
++.+|.+++|+|+.+.. .. .-.+.+..+...++|+++++||+|+..
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLD 123 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCC
Confidence 56789999999998865 32 234455667778999999999999754
No 362
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=96.96 E-value=0.01 Score=56.19 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=70.9
Q ss_pred EEEEEeecccCcccccceeccCC--ccC------CCc--HhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGT--ATM------DWM--EQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 139 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~--~~~------D~~--~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~ 139 (742)
+..+||....||++++....+|+ -+. |+. -.|.+.|.- .++.|+||.|...|.+-+.+
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~r------------iklqlwdtagqerfrsitks 77 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYR------------IKLQLWDTAGQERFRSITKS 77 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcE------------EEEEEeeccchHHHHHHHHH
Confidence 56789999999999887777765 222 322 234333433 36789999999999999999
Q ss_pred HHHhhceEEEEEeCCCCCcccHHHHH-HHHHH-cC---CCe-EEEEecccCCC
Q 004615 140 ALRVLDGAICLFDSVAGVEPQSETVW-RQADK-YG---VPR-ICFVNKMDRLG 186 (742)
Q Consensus 140 al~~~DgailVVDa~~Gv~~qT~~v~-~~a~~-~~---ip~-il~INK~Dr~~ 186 (742)
..|.+=|+++|.|.+.--.-.-...| ..|.. .+ .++ .+|-.|.|+..
T Consensus 78 yyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 78 YYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 99999999999998764333333333 33332 22 222 35668988764
No 363
>PRK00098 GTPase RsgA; Reviewed
Probab=96.95 E-value=0.0024 Score=68.52 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=34.7
Q ss_pred HHHhhceEEEEEeCCCCCc--ccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 140 ALRVLDGAICLFDSVAGVE--PQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 140 al~~~DgailVVDa~~Gv~--~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
.++.+|.+++|+|+.+... ..-.+.+..+...++|+++++||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 4788999999999975321 122345556778899999999999975
No 364
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.92 E-value=0.006 Score=53.63 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=60.7
Q ss_pred EEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEEcCCCc-cccCce
Q 004615 356 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGET 434 (742)
Q Consensus 356 ~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~gl~~-~~tGdT 434 (742)
.++|.....+++.|.++.+-|.+|+|++||.+...... .||..++ ...-..+.+|.+|+.+-+.|+++ ...||.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--GkVr~~~---d~~g~~v~~a~Ps~~v~i~g~~~~p~aGd~ 76 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY--GKIRTMV---DENGKALLEAGPSTPVEILGLKDVPKAGDG 76 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc--ceEEEEE---CCCCCCccccCCCCCEEEeeecCCccCCCE
Confidence 46788888899999999999999999999999876432 2455544 34446799999999999999987 567877
Q ss_pred ee
Q 004615 435 LC 436 (742)
Q Consensus 435 L~ 436 (742)
+.
T Consensus 77 ~~ 78 (95)
T cd03701 77 VL 78 (95)
T ss_pred EE
Confidence 64
No 365
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.91 E-value=0.0054 Score=65.05 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=80.0
Q ss_pred cEEEEEeecccCcccccceeccCCcc-----CCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHH------
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTAT-----MDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTL------ 135 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~-----~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~------ 135 (742)
-||-++|...+||||.+..+-..... .+.......+..+|......+.-++ ..+++|||||+-|...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 48999999999999988876443211 1111123445566665555554443 5788999999876311
Q ss_pred --------HHHHHHH-------------hhceEEEEEeCC-CCCcccHHHHHHHHHHcCCCeEEEEecccCCCCC-hHHH
Q 004615 136 --------EVERALR-------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-FFRT 192 (742)
Q Consensus 136 --------ev~~al~-------------~~DgailVVDa~-~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~-~~~~ 192 (742)
.-...|. ..|+||..|+++ .|+.+.....++.+.+. +++|-+|.|.|....+ +...
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~lt~~el~~~ 163 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADTLTPEELQAF 163 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGGS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEecccccCHHHHHHH
Confidence 0111111 258999999986 58888888877776664 8899999999998643 4444
Q ss_pred HHHHHHHh
Q 004615 193 RDMIVTNL 200 (742)
Q Consensus 193 ~~~i~~~l 200 (742)
...|++.+
T Consensus 164 k~~i~~~l 171 (281)
T PF00735_consen 164 KQRIREDL 171 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555555
No 366
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0015 Score=67.99 Aligned_cols=113 Identities=20% Similarity=0.271 Sum_probs=67.5
Q ss_pred cEEEEEeecccCccccccee-----cc-----------------CCccCCCcHhHH---hhcceEecceEEEEe------
Q 004615 69 RQFSVFAMAAEGRNYKIGEV-----HE-----------------GTATMDWMEQEQ---ERGITITSAATTTYW------ 117 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v-----~~-----------------g~~~~D~~~~E~---erGITi~s~~~~~~~------ 117 (742)
..|+|-|-+-+||||+++.+ +. |.-+-|....++ .-|+=|.|....=..
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~a 131 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRA 131 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHH
Confidence 48999999999999965543 11 222223222211 123444443333222
Q ss_pred ----------cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 118 ----------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 118 ----------~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
-+|-+.||-|-|--. +|+ .-...+|..++|.=...|-..|..+. --..+-=|+||||+|+.++
T Consensus 132 t~~~i~~ldAaG~DvIIVETVGvGQ--sev-~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~~A 204 (323)
T COG1703 132 TREAIKLLDAAGYDVIIVETVGVGQ--SEV-DIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRKGA 204 (323)
T ss_pred HHHHHHHHHhcCCCEEEEEecCCCc--chh-HHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccChhhH
Confidence 268889999988532 122 12357899999988877877776542 1112334899999998775
Q ss_pred C
Q 004615 188 N 188 (742)
Q Consensus 188 ~ 188 (742)
+
T Consensus 205 ~ 205 (323)
T COG1703 205 E 205 (323)
T ss_pred H
Confidence 4
No 367
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.87 E-value=0.014 Score=63.84 Aligned_cols=84 Identities=15% Similarity=0.064 Sum_probs=67.3
Q ss_pred hhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCC-----------CcccHHHHHHHHHH-
Q 004615 103 ERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-----------VEPQSETVWRQADK- 170 (742)
Q Consensus 103 erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~G-----------v~~qT~~v~~~a~~- 170 (742)
.|--|.......+.+++..+.++|..|...+..-+...+..+|++|+|||..+- -...+..+|+.+..
T Consensus 167 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~ 246 (342)
T smart00275 167 SRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS 246 (342)
T ss_pred eeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence 355666777788999999999999999999888999999999999999998862 12345555655543
Q ss_pred ---cCCCeEEEEecccCCC
Q 004615 171 ---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 171 ---~~ip~il~INK~Dr~~ 186 (742)
.+.|+++|.||.|...
T Consensus 247 ~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 247 RWFANTSIILFLNKIDLFE 265 (342)
T ss_pred ccccCCcEEEEEecHHhHH
Confidence 5689999999999763
No 368
>PRK01889 GTPase RsgA; Reviewed
Probab=96.86 E-value=0.0049 Score=67.71 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=39.3
Q ss_pred HHhhceEEEEEeCCCCCcc-cHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 141 LRVLDGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 141 l~~~DgailVVDa~~Gv~~-qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
+..+|.+++|+++...+.. ..++.+..|...++|+++++||+|+..
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 3568999999999877776 567788889999999999999999864
No 369
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.84 E-value=0.01 Score=50.07 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=50.6
Q ss_pred CeEEEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCCCcccc
Q 004615 354 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 431 (742)
Q Consensus 354 p~~~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~~~~t 431 (742)
|....|.+.+.-...+ +..|+|..|+|++|..| .|. +++.+..++-+ .+++++|.+||-|++ .|..++..
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~--~iG~I~sIe~~-~k~v~~A~~G~eVai~Ieg~~~i~e 75 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGR--KIGRIKSIEDN-GKNVDEAKKGDEVAISIEGPTQIKE 75 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSS--CEEEEEEEEET-TEEESEEETT-EEEEEEET--TB-T
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCE--EEEEEEEeEEC-CcCccccCCCCEEEEEEeCCccCCC
Confidence 4445555555555667 77779999999999999 333 37777777744 489999999999998 45446778
Q ss_pred Cceee
Q 004615 432 GETLC 436 (742)
Q Consensus 432 GdTL~ 436 (742)
||+|.
T Consensus 76 GDiLy 80 (81)
T PF14578_consen 76 GDILY 80 (81)
T ss_dssp T-EEE
T ss_pred CCEEe
Confidence 88773
No 370
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.83 E-value=0.0084 Score=53.67 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=63.4
Q ss_pred EEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCc--eEecceEEEeecC-------ceeeccccc--CCCEEEEcC
Q 004615 357 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHAN-------SREDVKVAL--AGDIIALAG 425 (742)
Q Consensus 357 ~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~--~~kV~~l~~~~g~-------~~~~v~~a~--aGdIv~I~g 425 (742)
+.|.....+++.|.++-+=|++|+|+.||.|....... ..||..|+...+. ++.+++++. +|--+.+.|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 56777888999999999999999999999999866543 2477777766663 345778777 777777789
Q ss_pred CCccccCceee
Q 004615 426 LKDTITGETLC 436 (742)
Q Consensus 426 l~~~~tGdTL~ 436 (742)
|+++..|+.|.
T Consensus 83 L~~v~aG~~~~ 93 (110)
T cd03703 83 LEKAIAGSPLL 93 (110)
T ss_pred CccccCCCEEE
Confidence 99998898764
No 371
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.82 E-value=0.0035 Score=63.05 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=36.5
Q ss_pred eEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe--EEEEecccCCC
Q 004615 120 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR--ICFVNKMDRLG 186 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~--il~INK~Dr~~ 186 (742)
....+|.|-|-. ...... -..+|++|+|+|+.+|-..+.+ ...++.. ++++||+|+..
T Consensus 92 ~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 92 LEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhccc
Confidence 467789999921 111111 1236999999999987653321 1123444 89999999874
No 372
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.81 E-value=0.013 Score=63.50 Aligned_cols=83 Identities=14% Similarity=0.069 Sum_probs=65.3
Q ss_pred hcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCC-----------cccHHHHHHHHHH--
Q 004615 104 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK-- 170 (742)
Q Consensus 104 rGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv-----------~~qT~~v~~~a~~-- 170 (742)
|.-|.......|.+++..+.++|++|...+..-+......++++|+|||..+-- ...+..+++....
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 455666677789999999999999999988888999999999999999988631 2233444444433
Q ss_pred --cCCCeEEEEecccCCC
Q 004615 171 --YGVPRICFVNKMDRLG 186 (742)
Q Consensus 171 --~~ip~il~INK~Dr~~ 186 (742)
.+.|+++|.||.|+..
T Consensus 225 ~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 225 WFANTSIILFLNKKDLFE 242 (317)
T ss_pred cccCCCEEEEccChHHHH
Confidence 5789999999999764
No 373
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.75 E-value=0.0049 Score=64.14 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=35.7
Q ss_pred HHHhhceEEEEEeCCCCC-cc-cHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 140 ALRVLDGAICLFDSVAGV-EP-QSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 140 al~~~DgailVVDa~~Gv-~~-qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
.++.+|++++|+|+.+.- .. +..+.+..+...++|+++++||+|+..
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLD 81 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCC
Confidence 578899999999998633 22 334445566678999999999999853
No 374
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.71 E-value=0.0057 Score=66.81 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=60.7
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEe-cceEEEEecC-eEEEEEcCCCc--cCcHHHHHH---H
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITIT-SAATTTYWNK-HRINIIDTPGH--VDFTLEVER---A 140 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~-s~~~~~~~~~-~~inlIDTPGh--~DF~~ev~~---a 140 (742)
.-||||+|...+||++.++.+..- -+-.+.--..|.+-. .....+.+.. -.+.|+|.||. .+|..+-.- .
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl---~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGL---GHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT-----TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC---CCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 469999999999999988766320 000011111222211 1122333332 35999999996 355433221 3
Q ss_pred HHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccC
Q 004615 141 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 184 (742)
Q Consensus 141 l~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr 184 (742)
+...|..|+|.+. -...-...+++.+.+.|.|..+|-+|+|.
T Consensus 112 ~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred ccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 5667987766553 34555667788999999999999999995
No 375
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.63 E-value=0.0073 Score=66.51 Aligned_cols=53 Identities=19% Similarity=0.043 Sum_probs=37.3
Q ss_pred CcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 132 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 132 DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
+|...+....+.+|.+++|+|+.+-...-...+.+.. .+.|+++++||+|+..
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCC
Confidence 5666555556788999999999765443333343332 2689999999999864
No 376
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.57 E-value=0.00093 Score=63.79 Aligned_cols=109 Identities=18% Similarity=0.294 Sum_probs=77.3
Q ss_pred CccEEEEEeecccCcccccceeccCCcc--------CCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTAT--------MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVE 138 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~--------~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~ 138 (742)
....+.|+|....||++.+-+--.|--+ .|+++. .| .+...+.++-++||.|...|..-+-
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdfler----qi-------~v~~Edvr~mlWdtagqeEfDaItk 87 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLER----QI-------KVLIEDVRSMLWDTAGQEEFDAITK 87 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhH----HH-------HhhHHHHHHHHHHhccchhHHHHHH
Confidence 4568999999999999977665554333 333321 11 1122466788999999999999888
Q ss_pred HHHHhhceEEEEEeCCCCCccc-HHHHHH--HHHHcCCCeEEEEecccCCC
Q 004615 139 RALRVLDGAICLFDSVAGVEPQ-SETVWR--QADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 139 ~al~~~DgailVVDa~~Gv~~q-T~~v~~--~a~~~~ip~il~INK~Dr~~ 186 (742)
+..|.+.+++||++.++--.-. |..+-+ +..-..+|.+++-||+|+..
T Consensus 88 Ayyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 88 AYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVE 138 (246)
T ss_pred HHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhH
Confidence 9999999999999987643222 222223 23446899999999999764
No 377
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=96.55 E-value=0.0076 Score=63.22 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=67.9
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe-cCeEEEEEcCCCcc-CcHHHHHHHH--
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHV-DFTLEVERAL-- 141 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~-~~~~inlIDTPGh~-DF~~ev~~al-- 141 (742)
...+.|+++|-.|+||+|++..+.+-+ +. +.+| -=-|.+...-.... .+..+.|.||=|+. |.-.....|+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aa-l~---p~dr-LFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A 250 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAA-LY---PNDR-LFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA 250 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhh-cC---ccch-hheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH
Confidence 345789999999999999988776321 11 0010 00122222222222 46788999999974 3322233333
Q ss_pred -----HhhceEEEEEeCCCC-CcccHHHHHHHHHHcCCC
Q 004615 142 -----RVLDGAICLFDSVAG-VEPQSETVWRQADKYGVP 174 (742)
Q Consensus 142 -----~~~DgailVVDa~~G-v~~qT~~v~~~a~~~~ip 174 (742)
..+|..|-|+|.+.- .+.|-+.|+.-+...++|
T Consensus 251 TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~ 289 (410)
T KOG0410|consen 251 TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVP 289 (410)
T ss_pred HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCC
Confidence 357999999998764 678999999999999997
No 378
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.018 Score=61.36 Aligned_cols=83 Identities=25% Similarity=0.336 Sum_probs=66.5
Q ss_pred eEEEEEcCCCc-----------cCcHHHHHHHHHhhceEEEEEeCCC-CCcccHHHHHHHHHHcCCCeEEEEecccCCCC
Q 004615 120 HRINIIDTPGH-----------VDFTLEVERALRVLDGAICLFDSVA-GVEPQSETVWRQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 120 ~~inlIDTPGh-----------~DF~~ev~~al~~~DgailVVDa~~-Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~ 187 (742)
..|++|||||. -||.+-...-...+|.++|+.|+.. -+...+++++.+++-+.=.+=+|+||.|....
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDT 226 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCH
Confidence 47999999995 3788888888889999999999865 58889999999999877777789999997653
Q ss_pred C-hHHHHHHHHHHhCC
Q 004615 188 N-FFRTRDMIVTNLGA 202 (742)
Q Consensus 188 ~-~~~~~~~i~~~l~~ 202 (742)
. +-++...+-..||.
T Consensus 227 qqLmRVyGALmWslgk 242 (532)
T KOG1954|consen 227 QQLMRVYGALMWSLGK 242 (532)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 2 45555566555553
No 379
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=96.52 E-value=0.011 Score=68.21 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=42.1
Q ss_pred ccEEEEEeecccCcccccceeccCCcc-CCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTAT-MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~-~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF 133 (742)
..+|+++|.+..|||+.++.+-....+ .+. ...+.| ....+...+.+..+++|||||..|.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss----~~~~TT-r~~ei~~~idG~~L~VIDTPGL~dt 179 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDA----FGMGTT-SVQEIEGLVQGVKIRVIDTPGLKSS 179 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccC----CCCCce-EEEEEEEEECCceEEEEECCCCCcc
Confidence 468999999999999988877543311 111 112333 3334455678999999999998874
No 380
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.49 E-value=0.06 Score=60.54 Aligned_cols=114 Identities=17% Similarity=0.269 Sum_probs=67.1
Q ss_pred CccEEEEEeecccCcccccceec-----cCC----ccCCC-cH--hHH------hhcceEecceEEE-----------Ee
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVH-----EGT----ATMDW-ME--QEQ------ERGITITSAATTT-----------YW 117 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~-----~g~----~~~D~-~~--~E~------erGITi~s~~~~~-----------~~ 117 (742)
...+|.++|.+-+||||.+..+. .|. ...|. ++ .|+ .-|+.+......- ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 35789999999999998554431 122 11232 12 222 1233322211000 01
Q ss_pred cCeEEEEEcCCCccCcHHHH------HHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHc--CCCe-EEEEecccCC
Q 004615 118 NKHRINIIDTPGHVDFTLEV------ERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVNKMDRL 185 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev------~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~--~ip~-il~INK~Dr~ 185 (742)
.++.+.||||||...+..+. ..++..+|.+++|+|+..| | ..++++..+ .+++ -+++||+|-.
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---q--~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---Q--QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---H--HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 34689999999977665443 2344567999999999886 2 334555543 3555 4789999953
No 381
>PRK10867 signal recognition particle protein; Provisional
Probab=96.39 E-value=0.093 Score=58.93 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=69.4
Q ss_pred ccEEEEEeecccCcccccceec-----c-CCc--c--CC-CcHh--HH------hhcceEecceE-----EE--------
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVH-----E-GTA--T--MD-WMEQ--EQ------ERGITITSAAT-----TT-------- 115 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~-----~-g~~--~--~D-~~~~--E~------erGITi~s~~~-----~~-------- 115 (742)
...|.++|..-+||||..+.+. . |.. + .| +++. || ..|+.+..... .+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 4789999999999999555442 2 431 1 23 2221 11 12443322110 00
Q ss_pred EecCeEEEEEcCCCccCcHH----HHHHHHH--hhceEEEEEeCCCCCcccHHHHHHHHHHc--CCCe-EEEEecccCCC
Q 004615 116 YWNKHRINIIDTPGHVDFTL----EVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVNKMDRLG 186 (742)
Q Consensus 116 ~~~~~~inlIDTPGh~DF~~----ev~~al~--~~DgailVVDa~~Gv~~qT~~v~~~a~~~--~ip~-il~INK~Dr~~ 186 (742)
...++.+.||||||..-... |+..-.+ ..|.+++|+|+..| | ...+++..+ .+++ -+++||+|-..
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~~~ 254 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDGDA 254 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccCcc
Confidence 11357899999999653322 2222222 35788999998653 2 334444432 3554 47889999532
Q ss_pred CChHHHHHHHHHHhCC
Q 004615 187 ANFFRTRDMIVTNLGA 202 (742)
Q Consensus 187 ~~~~~~~~~i~~~l~~ 202 (742)
. .-..-.+...++.
T Consensus 255 -r-gG~alsi~~~~~~ 268 (433)
T PRK10867 255 -R-GGAALSIRAVTGK 268 (433)
T ss_pred -c-ccHHHHHHHHHCc
Confidence 1 2234455555554
No 382
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.37 E-value=0.01 Score=66.28 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred ccEEEEEeecccCcccccceec-----cCC--c--cCCCcH---hHH------hhcceEecceEEE-------------E
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVH-----EGT--A--TMDWME---QEQ------ERGITITSAATTT-------------Y 116 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~-----~g~--~--~~D~~~---~E~------erGITi~s~~~~~-------------~ 116 (742)
...|.++|...+||||.++.+. .|. . -.|... .|| ..|+.+......- .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4689999999999999666653 232 1 133311 122 1333332111000 0
Q ss_pred ecCeEEEEEcCCCccCcHHHHHHHHH----h--hceEEEEEeCCCCCcccHHHHHHHHHHcCC-CeEEEEecccCC
Q 004615 117 WNKHRINIIDTPGHVDFTLEVERALR----V--LDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRL 185 (742)
Q Consensus 117 ~~~~~inlIDTPGh~DF~~ev~~al~----~--~DgailVVDa~~Gv~~qT~~v~~~a~~~~i-p~il~INK~Dr~ 185 (742)
-.++.+.||||||......+....|. . .|-++||+||..|-.. ....+...+ .+ +.-+++||+|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~-~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKD-SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHh-ccCCcEEEEECccCC
Confidence 13689999999997755433333332 2 4789999999876333 222222222 24 346899999974
No 383
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.34 E-value=0.035 Score=55.17 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=69.5
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEec-C--eEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-K--HRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~-~--~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
..+.|+|-...||+.++-.-..+..-.++.| -+. +--.+++... + ..++|+||.|..||..-.--+...+|
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvP-----TVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~td 78 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVP-----TVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTD 78 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCcccccC-----eEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCC
Confidence 5789999999999997766555432222211 111 1122233332 3 45789999999999763334667889
Q ss_pred eEEEEEeCCCCC--cccHHHHHHHHHHc--CCCeEEEEecccCC
Q 004615 146 GAICLFDSVAGV--EPQSETVWRQADKY--GVPRICFVNKMDRL 185 (742)
Q Consensus 146 gailVVDa~~Gv--~~qT~~v~~~a~~~--~ip~il~INK~Dr~ 185 (742)
..|++.+...-- ..-....+...+.+ ++|+|++-+|.|+-
T Consensus 79 vfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 79 VFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred EEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 998887755421 11123334444443 69999999999976
No 384
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.039 Score=55.66 Aligned_cols=117 Identities=19% Similarity=0.272 Sum_probs=76.3
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH---HHHHHHHHhhc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT---LEVERALRVLD 145 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~---~ev~~al~~~D 145 (742)
++|.++||-.+||++...-|-..-.-.+.+-.|-...||.+.-..+| ..+..+|-||..||. -.-++-.+.+-
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sf----inf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSF----INFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhh----cceEEeecCCccccCCCccCHHHHHhccC
Confidence 55999999999999977666443222333333333334333222122 246689999999873 34567788899
Q ss_pred eEEEEEeCCCC-CcccHHHHHHHHHHcCC----CeEEEEecccCCCCCh
Q 004615 146 GAICLFDSVAG-VEPQSETVWRQADKYGV----PRICFVNKMDRLGANF 189 (742)
Q Consensus 146 gailVVDa~~G-v~~qT~~v~~~a~~~~i----p~il~INK~Dr~~~~~ 189 (742)
+.|+||||.+. .++-++-+.-.++.+++ ..=+||-|.|-+..++
T Consensus 104 ALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 104 ALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred eEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 99999999764 34445555555666654 3348999999887653
No 385
>PRK13796 GTPase YqeH; Provisional
Probab=96.28 E-value=0.019 Score=63.42 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=34.9
Q ss_pred CcHHHHHHHHHhhc-eEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 132 DFTLEVERALRVLD-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 132 DF~~ev~~al~~~D-gailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
||. .+...+...| .+++|||+.+-...--..+-+.. .+.|+++++||+|+..
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~ 110 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLP 110 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCC
Confidence 443 4666777666 88999999885433333332222 3789999999999864
No 386
>PRK12288 GTPase RsgA; Reviewed
Probab=96.25 E-value=0.022 Score=62.29 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=32.4
Q ss_pred HhhceEEEEEeCCCCCcccH-HHHHHHHHHcCCCeEEEEecccCCC
Q 004615 142 RVLDGAICLFDSVAGVEPQS-ETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 142 ~~~DgailVVDa~~Gv~~qT-~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
..+|.+++|.+........- .+.+..+...++|+++++||+|+..
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 45799988888654443322 3344567778999999999999864
No 387
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.041 Score=51.82 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=69.0
Q ss_pred EEEEeecccCcccccceeccCCcc--------CCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcHHHHHHH
Q 004615 71 FSVFAMAAEGRNYKIGEVHEGTAT--------MDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFTLEVERA 140 (742)
Q Consensus 71 i~iiGh~~~Gk~~~~g~v~~g~~~--------~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~~ev~~a 140 (742)
+-.+|..-.||++.+-.-.+|+-. .|+++ ..+--+++.-...-.+ .++.|+||.|...|.+-+.+-
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFre----KrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFRE----KRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeeccccc----ceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 345677778888877766666421 23321 1111111111110012 356789999999999999999
Q ss_pred HHhhceEEEEEeCCCCC-cccHHHHHHHHHH----cCCCeEEEEecccCCC
Q 004615 141 LRVLDGAICLFDSVAGV-EPQSETVWRQADK----YGVPRICFVNKMDRLG 186 (742)
Q Consensus 141 l~~~DgailVVDa~~Gv-~~qT~~v~~~a~~----~~ip~il~INK~Dr~~ 186 (742)
.|.+=|-++++|-+.-- --.++..+.|++. ++--++++-||.|++.
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 99999999999977531 1224444455443 3444578889999765
No 388
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.17 E-value=0.0094 Score=59.69 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=86.9
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe-cCeEEEEEcCCCccCcHHHHHH-----HH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTLEVER-----AL 141 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~-~~~~inlIDTPGh~DF~~ev~~-----al 141 (742)
.|.|.++|...+||++..+-+-..-..-|. +.-|-||+....++.+ ++..+|++|+.|...|...-.+ .+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~----~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF 79 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDT----RRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIF 79 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhh----hccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhh
Confidence 478999999999999988765442222233 3358888888888877 4588999999999877655444 56
Q ss_pred HhhceEEEEEeCCCCCccc----HHHHHHHHHHc--CCCeEEEEecccCCCCChHHHHHHHH
Q 004615 142 RVLDGAICLFDSVAGVEPQ----SETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDMIV 197 (742)
Q Consensus 142 ~~~DgailVVDa~~Gv~~q----T~~v~~~a~~~--~ip~il~INK~Dr~~~~~~~~~~~i~ 197 (742)
+..+..+.|.|+..--... ++..+++..+. ..++.+++.|||+...|..+.+-+.+
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r 141 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRR 141 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHH
Confidence 7789999999986542222 23333333332 34567899999999888665544444
No 389
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.038 Score=59.80 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=95.3
Q ss_pred cEEEEEeecccCcccccceecc----CCccCCCcHhHHhhcceEecceEEEEecCe--EEEEEcCCCccCcHH-------
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHE----GTATMDWMEQEQERGITITSAATTTYWNKH--RINIIDTPGHVDFTL------- 135 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~----g~~~~D~~~~E~erGITi~s~~~~~~~~~~--~inlIDTPGh~DF~~------- 135 (742)
=++-++|....||||.++++-. ++...+..+.+..+..+|.+....+.=++. ++|+|||||.-|+..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 4788999999999998877532 333335555566666777777776666654 567899999988631
Q ss_pred -------HHHHHHH-------------hhceEEEEEeCC-CCCcccHHHHHHHHHHcCCCeEEEEecccCCCCC-hHHHH
Q 004615 136 -------EVERALR-------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-FFRTR 193 (742)
Q Consensus 136 -------ev~~al~-------------~~DgailVVDa~-~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~-~~~~~ 193 (742)
+-...|. -.++||..|... .|+.+.....++.... ++.+|-+|-|.|....+ +....
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~~~K 180 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELNQFK 180 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHHHHH
Confidence 1112221 257999999854 6899998887776554 58889999999998755 45555
Q ss_pred HHHHHHhCCcceEEE
Q 004615 194 DMIVTNLGAKPLVVQ 208 (742)
Q Consensus 194 ~~i~~~l~~~~~~~~ 208 (742)
..|.+-+...-+.++
T Consensus 181 ~~I~~~i~~~nI~vf 195 (366)
T KOG2655|consen 181 KRIRQDIEEHNIKVF 195 (366)
T ss_pred HHHHHHHHHcCccee
Confidence 666666655444443
No 390
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.01 E-value=0.074 Score=53.38 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=92.5
Q ss_pred cCCCeeeEEEEEEe--ccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecc
Q 004615 601 AGFPVVDVRAALVD--GSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678 (742)
Q Consensus 601 ~g~pv~~v~v~l~d--~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~ 678 (742)
.+.-++||.+.+.. |-..- -.....-|=..|.++|+..|...-+.|...++|.+|-+.+|.|...|.+..++|.+
T Consensus 88 ~~~~l~nv~vVVtRYFGGikL---G~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~ 164 (204)
T TIGR00257 88 RGSDLGDIGAVVVRYFGGILL---GTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIK 164 (204)
T ss_pred HHCCCCcEEEEEEEecCCccc---CCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEe
Confidence 46678888888874 22221 22345567778888999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEE
Q 004615 679 FGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYI 716 (742)
Q Consensus 679 ~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~ 716 (742)
.+..+ .+.++..+|..+.-.|...|..+|+|+..+.
T Consensus 165 ~~y~~--~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 165 SNFSN--NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred eEecC--CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 98854 5899999999999999999999999998653
No 391
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.91 E-value=0.027 Score=59.48 Aligned_cols=116 Identities=14% Similarity=0.211 Sum_probs=64.8
Q ss_pred CccEEEEEeecccCccccccee-----ccCCcc----CCC-cH--hH------HhhcceEecceE-----E--------E
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEV-----HEGTAT----MDW-ME--QE------QERGITITSAAT-----T--------T 115 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v-----~~g~~~----~D~-~~--~E------~erGITi~s~~~-----~--------~ 115 (742)
..+.|+++|..-+||||....+ ..|..+ +|. +. .| ..+|+.+-.... . .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999844333 223322 242 11 22 234544321100 0 0
Q ss_pred EecCeEEEEEcCCCccCcHHHHHH-------HHH-----hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecc
Q 004615 116 YWNKHRINIIDTPGHVDFTLEVER-------ALR-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKM 182 (742)
Q Consensus 116 ~~~~~~inlIDTPGh~DF~~ev~~-------al~-----~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~ 182 (742)
..+++.+.||||||.......... ... ..|..++|+|+..|- ++........ ..+++ -+++||+
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~-~~~~~~g~IlTKl 227 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFN-EAVGLTGIILTKL 227 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHH-hhCCCCEEEEEcc
Confidence 125689999999998765444332 221 279999999997542 2222222111 12333 5899999
Q ss_pred cCC
Q 004615 183 DRL 185 (742)
Q Consensus 183 Dr~ 185 (742)
|-.
T Consensus 228 De~ 230 (272)
T TIGR00064 228 DGT 230 (272)
T ss_pred CCC
Confidence 964
No 392
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.88 E-value=0.025 Score=55.25 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=43.9
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHH------hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~------~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~ 186 (742)
.++.+.+|||||...+..+....++ ..|++++|+|+..+-... +..++.....++ .-+++||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCCC-CEEEEECCcCCC
Confidence 4677999999998754433333332 389999999997543222 344444445553 457889999764
No 393
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=95.79 E-value=0.0081 Score=61.62 Aligned_cols=87 Identities=20% Similarity=0.128 Sum_probs=57.0
Q ss_pred CCccEEEEEeecccCcccccceeccCC---ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc------HHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGT---ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF------TLE 136 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~---~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF------~~e 136 (742)
..+..|+|+|...+||+++++.+-... .+++.. ..-.+||-+-...... ..++.+.|+||||..+- ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~-~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS-QQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC-CCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhh
Confidence 457789999999999999888775431 222222 2223566554332221 24689999999997654 223
Q ss_pred HHHHHHh--hceEEEEEeCC
Q 004615 137 VERALRV--LDGAICLFDSV 154 (742)
Q Consensus 137 v~~al~~--~DgailVVDa~ 154 (742)
...++.. +|..|+.+++.
T Consensus 83 ~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 83 RLFALATLLSSVLIYNSWET 102 (224)
T ss_pred HHHHHHHHHhCEEEEeccCc
Confidence 4556655 89988888875
No 394
>PRK11568 hypothetical protein; Provisional
Probab=95.76 E-value=0.12 Score=51.96 Aligned_cols=111 Identities=15% Similarity=0.226 Sum_probs=92.3
Q ss_pred cCCCeeeEEEEEEe--ccccCCCCCHHHHHHHHHHHHHHHHHhcCCeeeeceeEEEEEeCCcchHHHHHHHhcCCceecc
Q 004615 601 AGFPVVDVRAALVD--GSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678 (742)
Q Consensus 601 ~g~pv~~v~v~l~d--~~~~~~ds~~~~f~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~L~~rrg~i~~ 678 (742)
.+.-++||.+.++. |-.+- -.....-|=..|.++|+..|...-..|...+.|.+|-+.+|.|...|.+..+.|.+
T Consensus 88 ~~~~l~nv~vVVtRYFGGikL---G~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~ 164 (204)
T PRK11568 88 MGSGVGEITAVVVRYYGGILL---GTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVN 164 (204)
T ss_pred HHCCCccEEEEEEEEcCCccc---ccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEc
Confidence 46678898888874 32222 22344557778888899999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEE
Q 004615 679 FGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYI 716 (742)
Q Consensus 679 ~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~ 716 (742)
.+..+ .+.++..+|..+.-.|...|..+|+|+..+.
T Consensus 165 ~~y~~--~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 165 SEYQA--FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred ceecC--CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 98854 5889999999999999999999999998654
No 395
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=95.67 E-value=0.031 Score=56.29 Aligned_cols=68 Identities=21% Similarity=0.139 Sum_probs=53.5
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 186 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~ 186 (742)
+.|.+.|||||... ...+....++.+|++|+|+++...-..+.+...+++.+.+.+++ +++||.|...
T Consensus 126 ~~yD~ViiD~pp~~-~~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIG-TVTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCcc-ccchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 46889999999732 22334445577999999999987777778888889999999986 8999999664
No 396
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.57 E-value=0.022 Score=61.46 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=69.7
Q ss_pred CccEEEEEeecccCcccccceec-----cCC--cc--CCCc---------HhHHhhcceEecceEE-------------E
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVH-----EGT--AT--MDWM---------EQEQERGITITSAATT-------------T 115 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~-----~g~--~~--~D~~---------~~E~erGITi~s~~~~-------------~ 115 (742)
....|+++|..-+||||.+..+. .|. .+ .|.. .....+|+.+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999998444331 122 11 2321 1123456554322100 0
Q ss_pred EecCeEEEEEcCCCccCc----HHHHHHHHHh--------hceEEEEEeCCCCCcccHHHHHHHHHHc--CCCe-EEEEe
Q 004615 116 YWNKHRINIIDTPGHVDF----TLEVERALRV--------LDGAICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVN 180 (742)
Q Consensus 116 ~~~~~~inlIDTPGh~DF----~~ev~~al~~--------~DgailVVDa~~Gv~~qT~~v~~~a~~~--~ip~-il~IN 180 (742)
...++.+.||||||...+ ..|+....++ .|..++|+||..|-.. +.++..+ .++. -+++|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~-----~~~a~~f~~~~~~~giIlT 267 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA-----LSQAKAFHEAVGLTGIILT 267 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH-----HHHHHHHHhhCCCCEEEEE
Confidence 125689999999997643 3455554444 4678999999975322 2233332 2333 58999
Q ss_pred cccCCCCChHHHHHH
Q 004615 181 KMDRLGANFFRTRDM 195 (742)
Q Consensus 181 K~Dr~~~~~~~~~~~ 195 (742)
|+|.. +..-.+++.
T Consensus 268 KlD~t-~~~G~~l~~ 281 (318)
T PRK10416 268 KLDGT-AKGGVVFAI 281 (318)
T ss_pred CCCCC-CCccHHHHH
Confidence 99943 333333333
No 397
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.57 E-value=0.0063 Score=58.49 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=40.4
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCc
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 130 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh 130 (742)
...+++++|++++||++.+..+......- -...+|.|.......+ +..++|+||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~----~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK----VGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc----ccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 45789999999999999887765432111 1223677877665544 356999999994
No 398
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=95.50 E-value=0.12 Score=52.21 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=79.8
Q ss_pred cEEEEEeecccCcccccceeccC----CccCCCcHhHHhhcceEecceEEEEecC--eEEEEEcCCCccCcH--------
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT-------- 134 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g----~~~~D~~~~E~erGITi~s~~~~~~~~~--~~inlIDTPGh~DF~-------- 134 (742)
=||-++|..-.||+|.+..+-.. ++..|+..+-.-.-+-|++..-.++-++ .++|+|||||+-|+.
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 48999999999999987655321 1444444433333455666555555555 468999999998863
Q ss_pred ------HHHHHHHH----------h----hceEEEEEeCCC-CCcccHHHHHHHHHHcCCCeEEEEecccCCCCCh-HHH
Q 004615 135 ------LEVERALR----------V----LDGAICLFDSVA-GVEPQSETVWRQADKYGVPRICFVNKMDRLGANF-FRT 192 (742)
Q Consensus 135 ------~ev~~al~----------~----~DgailVVDa~~-Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~-~~~ 192 (742)
.+-+..|+ . ..+|+..|..+. ...+-+.+.++.+-+- +-++-||-|.|.+..+- .+-
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaDtlTleEr~~F 205 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKADTLTLEERSAF 205 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecccccHHHHHHH
Confidence 11122222 2 468888888752 3556666655443332 45677899999876442 223
Q ss_pred HHHHHHHhC
Q 004615 193 RDMIVTNLG 201 (742)
Q Consensus 193 ~~~i~~~l~ 201 (742)
-+.|++.|-
T Consensus 206 kqrI~~el~ 214 (336)
T KOG1547|consen 206 KQRIRKELE 214 (336)
T ss_pred HHHHHHHHH
Confidence 344555443
No 399
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.39 E-value=0.033 Score=54.61 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=35.7
Q ss_pred ceEEEEEeCCCCCcccHHHHHHH--HHHcCCCeEEEEecccCCC
Q 004615 145 DGAICLFDSVAGVEPQSETVWRQ--ADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 145 DgailVVDa~~Gv~~qT~~v~~~--a~~~~ip~il~INK~Dr~~ 186 (742)
|.+++|+||......+...+.+. ....+.|.|+++||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999999888888888777 4456789999999999954
No 400
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.30 E-value=0.061 Score=52.40 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=61.3
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHH--HhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCCCC------
Q 004615 118 NKHRINIIDTPGHVDFTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN------ 188 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al--~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~------ 188 (742)
++|.+.++|||+..+ .+....+ ..+|.+|+|+....--..++...++.+.+.+++++ +++|+.+....+
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~ 143 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIY 143 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCccc
Confidence 578999999999853 3444444 68999999998877666778889999999999986 889999863211
Q ss_pred --hHHHHHHHHHHhCC
Q 004615 189 --FFRTRDMIVTNLGA 202 (742)
Q Consensus 189 --~~~~~~~i~~~l~~ 202 (742)
..+.++++.+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 144 IFGKGGGEKLAEELGV 159 (169)
T ss_pred ccCCccHHHHHHHcCC
Confidence 12355666666644
No 401
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.29 E-value=0.013 Score=57.55 Aligned_cols=56 Identities=16% Similarity=0.308 Sum_probs=38.7
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 130 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh 130 (742)
..+++++|.+++||||+++.+....... -....|+|.......+ +..+.|+||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~----~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACN----VGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccce----ecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 3689999999999999988876543111 1122688876544433 346999999993
No 402
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.29 E-value=0.77 Score=50.79 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=68.2
Q ss_pred ccEEEEEeecccCcccccceecc-----CC----ccCCC-cH--hHHhhcceEecceEEEEe------------------
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHE-----GT----ATMDW-ME--QEQERGITITSAATTTYW------------------ 117 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~-----g~----~~~D~-~~--~E~erGITi~s~~~~~~~------------------ 117 (742)
.-.|-++|---+||||..|.+.. |. .-.|. +| .||-+...-+..+-.|.-
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH
Confidence 35678899999999997776532 21 11121 22 233332222222222221
Q ss_pred -cCeEEEEEcCCCccCcHHHHHHHH------HhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCC
Q 004615 118 -NKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 185 (742)
Q Consensus 118 -~~~~inlIDTPGh~DF~~ev~~al------~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~ 185 (742)
..+.+.|+||.|-.--..++..-+ -.-|=.++|+||.-| |.-.-...+....+++- ++++|+|-.
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcccCC
Confidence 357899999999543333332222 235889999999876 55444445556678874 899999964
No 403
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.21 E-value=0.1 Score=54.08 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=61.2
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCCCChHHHHHHH
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 196 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~~~~~~~~i 196 (742)
++|.+.+||||+-.+ ..+..++..+|.+|+|++....-..++.+.++.+...+++.+ +++|+.|..... ...+.+
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~~~~--~~~~~l 182 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRDKTE--LGREEI 182 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCchhhh--hHHHHH
Confidence 468999999999765 467788999999999999865444455566677777788864 899999864322 223455
Q ss_pred HHHhCCcceEEEec
Q 004615 197 VTNLGAKPLVVQLP 210 (742)
Q Consensus 197 ~~~l~~~~~~~~~P 210 (742)
.+.++...+ ..+|
T Consensus 183 ~~~~~~~~l-~~Ip 195 (251)
T TIGR01969 183 ETILEVPVL-GVVP 195 (251)
T ss_pred HHhhCCcEE-EEec
Confidence 555665432 3444
No 404
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.21 E-value=0.067 Score=58.62 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=91.6
Q ss_pred CccEEEEEeecccCcccccceecc------------CCccCCCcHhHHhhcceEecceE--------EEEec---CeEEE
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHE------------GTATMDWMEQEQERGITITSAAT--------TTYWN---KHRIN 123 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~------------g~~~~D~~~~E~erGITi~s~~~--------~~~~~---~~~in 123 (742)
.-.-|+++|++.+||||.+-+.-+ ..+..|-+|+-- -|-||-++-- .+..+ ..++-
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~-aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSG-AGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCC-CCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 346899999999999996654311 112222222211 2666655432 22232 36888
Q ss_pred EEcCCCcc-------------------------CcHHHHHHHHHh--hc----eEEEEEeCCCCC------cccHHHHHH
Q 004615 124 IIDTPGHV-------------------------DFTLEVERALRV--LD----GAICLFDSVAGV------EPQSETVWR 166 (742)
Q Consensus 124 lIDTPGh~-------------------------DF~~ev~~al~~--~D----gailVVDa~~Gv------~~qT~~v~~ 166 (742)
||||-|+. -|..-.+-+-+- .| |.|+.-|++-|- ..-.+++.+
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99998852 144444444442 12 566666665442 233577889
Q ss_pred HHHHcCCCeEEEEecccCCCCChHHHHHHHHHHhCCcceEEEe
Q 004615 167 QADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 209 (742)
Q Consensus 167 ~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l~~~~~~~~~ 209 (742)
.+++.|.|.++++|-.+=...+-.+..+++.++++...+|+..
T Consensus 175 ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc 217 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNC 217 (492)
T ss_pred HHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeeh
Confidence 9999999999999998866666778889999999998776643
No 405
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.11 E-value=0.14 Score=50.53 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.9
Q ss_pred ceeeeeccccCCCChHHHHHHHHHh
Q 004615 299 FVPVLCGSAFKNKGVQPLLDAVVDY 323 (742)
Q Consensus 299 ~~Pv~~~Sa~~~~gv~~LLd~I~~~ 323 (742)
-.|+++.|+++|.|++.+++++...
T Consensus 175 ~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 175 EAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred CCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 3589999999999999999998654
No 406
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.06 E-value=0.017 Score=55.53 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=36.7
Q ss_pred ccEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 130 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh 130 (742)
..+|+++|.++.||||.++.+...+ ++.+ ..|.|.....+. .+..+.|+||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~------~~g~T~~~~~~~---~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAP------IPGETKVWQYIT---LMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCC------CCCeeEeEEEEE---cCCCEEEEECcCC
Confidence 4579999999999999888774422 2222 256666543332 2345899999993
No 407
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.97 E-value=0.066 Score=50.47 Aligned_cols=75 Identities=13% Similarity=0.017 Sum_probs=51.8
Q ss_pred eEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHc--CCCeEEEEecccCCCCChHHHHHHHH
Q 004615 120 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDMIV 197 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~--~ip~il~INK~Dr~~~~~~~~~~~i~ 197 (742)
+.+.+||||++.+ .....++..+|.+++|++...--..++...++++.+. ..+..+++|+++.. .+.+++.+.+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-~~~~~~~~~~~ 121 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-KEGKKVFKRLS 121 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-HHHHHHHHHHH
Confidence 7899999999754 4457889999999999998754444556666665443 34556999999754 23333444443
No 408
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=94.96 E-value=0.19 Score=47.42 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=74.7
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHh--HHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQ--EQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLD 145 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~--E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~D 145 (742)
...|+++|....||++.+-. -+-+..++ ++..|+-.--..+++.-.+..+.++|.-|...|....--|-..+-
T Consensus 20 slkv~llGD~qiGKTs~mvk-----YV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVK-----YVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred EEEEEeecccccCceeeehh-----hhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 35799999999999987632 12222223 333454433333333333456779999999998887777777777
Q ss_pred eEEEEEeCCCCCcccHH-HHHHHHHHcCCCe--EEEEecccCC
Q 004615 146 GAICLFDSVAGVEPQSE-TVWRQADKYGVPR--ICFVNKMDRL 185 (742)
Q Consensus 146 gailVVDa~~Gv~~qT~-~v~~~a~~~~ip~--il~INK~Dr~ 185 (742)
..++++|-+.--+-.+. ...+||+..+.-. |++-+|.|..
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 88999998765444443 4458998877543 5677888854
No 409
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=94.90 E-value=0.0096 Score=59.26 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=39.4
Q ss_pred cEEEEEeecccCcccccceeccCCccC----CCcHhHHhhcceEecceEEEEecCeEEEEEcCCCc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATM----DWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 130 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~----D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh 130 (742)
.++.++|.++.||+|+++.+....... .........|.|.......+. ..+.||||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 589999999999999888775432100 001112235888887655553 25899999994
No 410
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=94.89 E-value=0.017 Score=58.50 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=64.2
Q ss_pred CCccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCc-------HHHHH
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEVE 138 (742)
Q Consensus 66 ~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF-------~~ev~ 138 (742)
..--+|+++|-+-.||+|+++.+.. |.+....-| =.|...-.--+.|++..|.++|-||.+.= ..+|.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~--T~SeaA~ye---FTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQvi 134 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITS--THSEAASYE---FTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVI 134 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhc--chhhhhcee---eeEEEeecceEEecCceEEEecCcccccccccCCCCCceEE
Confidence 3456899999999999999987754 111111111 14555556677889999999999998753 35678
Q ss_pred HHHHhhceEEEEEeCCCC
Q 004615 139 RALRVLDGAICLFDSVAG 156 (742)
Q Consensus 139 ~al~~~DgailVVDa~~G 156 (742)
+..|-+|.+++|+||..+
T Consensus 135 avArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKS 152 (364)
T ss_pred EEeecccEEEEEecCCcc
Confidence 888999999999999874
No 411
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.88 E-value=0.067 Score=51.67 Aligned_cols=63 Identities=24% Similarity=0.168 Sum_probs=40.7
Q ss_pred CeEEEEEcCCCccCcHHHH--------HHHHHhhceEEEEEeCCCCCcc--cHHHHHHHHHHcCCCeEEEEecccC
Q 004615 119 KHRINIIDTPGHVDFTLEV--------ERALRVLDGAICLFDSVAGVEP--QSETVWRQADKYGVPRICFVNKMDR 184 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~ev--------~~al~~~DgailVVDa~~Gv~~--qT~~v~~~a~~~~ip~il~INK~Dr 184 (742)
...+.+|||||-.+-..-+ ..+.-.+|+++.|||+...... +.....+|+... -++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 3567899999987643222 2233357999999999764331 123344555554 3789999995
No 412
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.78 E-value=0.74 Score=51.79 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=46.5
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHH------HhhceEEEEEeCCCCCcccHHHHHHHHHHc--CCCe-EEEEecccCCCCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVNKMDRLGAN 188 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al------~~~DgailVVDa~~Gv~~qT~~v~~~a~~~--~ip~-il~INK~Dr~~~~ 188 (742)
+++.+.||||||...........| ...|.+++|+|+..| | ...++|..+ .+++ =+++||+|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q--~~~~~a~~f~~~v~i~giIlTKlD~~~-- 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---Q--DAVNTAKTFNERLGLTGVVLTKLDGDA-- 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---H--HHHHHHHHHHhhCCCCEEEEeCccCcc--
Confidence 357899999999654433333322 236899999999754 2 334444433 3555 37899999432
Q ss_pred hHHHHHHHHHHhCC
Q 004615 189 FFRTRDMIVTNLGA 202 (742)
Q Consensus 189 ~~~~~~~i~~~l~~ 202 (742)
-.-.+-.+...++.
T Consensus 254 ~~G~~lsi~~~~~~ 267 (428)
T TIGR00959 254 RGGAALSVRSVTGK 267 (428)
T ss_pred cccHHHHHHHHHCc
Confidence 11224555555554
No 413
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.12 Score=47.50 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=72.7
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
+-...|+|.-..||+.++......+-.-|. |.- -|+-.....+.+.-...++.++||.|...|..-..+..|.+-||
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadc-pht--igvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHT--IGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcC-Ccc--cceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 445678899999999877665554333332 210 12222222233333446788999999999999888999999999
Q ss_pred EEEEeCCCCCcccHHHHH-HHHHHcCCC---eEEEEecccCCC
Q 004615 148 ICLFDSVAGVEPQSETVW-RQADKYGVP---RICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~Gv~~qT~~v~-~~a~~~~ip---~il~INK~Dr~~ 186 (742)
++|-|.+.--...-..-| .-|+..--| ++++-||.|+..
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 999998764333322223 234443333 345569999754
No 414
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.071 Score=61.29 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=59.0
Q ss_pred ecceEEEEecC-------eEEEEEcCCCc---cCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHH-HHHHHHcCCCeE-
Q 004615 109 TSAATTTYWNK-------HRINIIDTPGH---VDFTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADKYGVPRI- 176 (742)
Q Consensus 109 ~s~~~~~~~~~-------~~inlIDTPGh---~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v-~~~a~~~~ip~i- 176 (742)
..+...+.|++ .-+.|||.||- ..++..+..-...+|..|+|++|-.- ..|++.. ++.+.+. .|-|
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt-lt~sek~Ff~~vs~~-KpniF 265 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT-LTLSEKQFFHKVSEE-KPNIF 265 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH-hHHHHHHHHHHhhcc-CCcEE
Confidence 34566777754 26899999996 34666777777789999999998654 3455544 4555554 6766
Q ss_pred EEEecccCCCCChHHHHHHHHHH
Q 004615 177 CFVNKMDRLGANFFRTRDMIVTN 199 (742)
Q Consensus 177 l~INK~Dr~~~~~~~~~~~i~~~ 199 (742)
++.||+|... +-.++.+.+...
T Consensus 266 IlnnkwDasa-se~ec~e~V~~Q 287 (749)
T KOG0448|consen 266 ILNNKWDASA-SEPECKEDVLKQ 287 (749)
T ss_pred EEechhhhhc-ccHHHHHHHHHH
Confidence 5668999754 444555555544
No 415
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.58 E-value=0.079 Score=56.15 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=38.1
Q ss_pred ccEEEEEeecccCcccccceeccCC--ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGT--ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 130 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh 130 (742)
..+++++|.++.||||.+..+...+ .+.+ ..|+|.....+.+ +..+.|+||||.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~------~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGN------RPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCC------CCCeecceEEEEe---CCCEEEEECCCc
Confidence 4579999999999999988875432 2222 2577776543333 346899999997
No 416
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=94.50 E-value=0.12 Score=54.99 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=40.0
Q ss_pred ccEEEEEeecccCcccccceeccCCc-cCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccC
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTA-TMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 132 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~-~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~D 132 (742)
..+++++|.++.||||.+..+...+. ..+.. -|+|.....+. -+..+.|+||||...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~-----~g~T~~~~~~~---~~~~~~l~DtPGi~~ 178 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNR-----PGVTKAQQWIK---LGKGLELLDTPGILW 178 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCC-----CCeEEEEEEEE---eCCcEEEEECCCcCC
Confidence 45799999999999999888765431 22222 47887754322 245799999999754
No 417
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=94.40 E-value=0.016 Score=63.85 Aligned_cols=124 Identities=11% Similarity=0.144 Sum_probs=68.5
Q ss_pred cEEEEEeecccCcccccceeccCC-------ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGT-------ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERAL 141 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~-------~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al 141 (742)
+++.++|.+++||||+++.+-... ++.++ .|.|...... .. +..+.|+||||..... ++..-+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~------pgtT~~~~~~--~~-~~~~~l~DtPG~~~~~-~~~~~l 224 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPF------PGTTLDLIEI--PL-DDGHSLYDTPGIINSH-QMAHYL 224 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCC------CCeEeeEEEE--Ee-CCCCEEEECCCCCChh-Hhhhhc
Confidence 689999999999999888774311 22222 6777764433 33 2346799999986532 222212
Q ss_pred H-----------hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCC-ChHHHHHHHHHHhCC
Q 004615 142 R-----------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 202 (742)
Q Consensus 142 ~-----------~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~-~~~~~~~~i~~~l~~ 202 (742)
. ......+.+|....+......-+......+....++++|-+.... +.++..+-+++.+|.
T Consensus 225 ~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~ 297 (360)
T TIGR03597 225 DKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLGN 297 (360)
T ss_pred CHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcCC
Confidence 1 133445555543322111111111112234556778888777653 455556666666554
No 418
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.27 E-value=0.087 Score=41.32 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=26.2
Q ss_pred HHHHHH-hhceEEEEEeCCCCCc--ccHH-HHHHHHHH-c-CCCeEEEEeccc
Q 004615 137 VERALR-VLDGAICLFDSVAGVE--PQSE-TVWRQADK-Y-GVPRICFVNKMD 183 (742)
Q Consensus 137 v~~al~-~~DgailVVDa~~Gv~--~qT~-~v~~~a~~-~-~ip~il~INK~D 183 (742)
...||+ ..+.+++++|.++.-. ...+ .+++..+. . +.|.++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 455665 4578899999886432 2222 23444444 3 899999999998
No 419
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.25 E-value=0.11 Score=46.44 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=46.7
Q ss_pred EEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCC----eEEEEec
Q 004615 121 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP----RICFVNK 181 (742)
Q Consensus 121 ~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip----~il~INK 181 (742)
.+.+||||+..+. ....++..+|.+|++++...--...+...++.+.+.+.+ ..+++|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999998654 456789999999999998876666777788877776654 3488886
No 420
>PRK14974 cell division protein FtsY; Provisional
Probab=94.23 E-value=0.13 Score=55.94 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=64.6
Q ss_pred CccEEEEEeecccCcccccceec-----cCCc----cCCCc---HhHHh------hcceEecceE-----E--------E
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVH-----EGTA----TMDWM---EQEQE------RGITITSAAT-----T--------T 115 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~-----~g~~----~~D~~---~~E~e------rGITi~s~~~-----~--------~ 115 (742)
+.+.|+++|.+-+||||.+..+. .|.. ..|.. ..||- -|+.+..... . .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35789999999999999444331 2221 13421 11221 1332211100 0 0
Q ss_pred EecCeEEEEEcCCCccCcH----HHHHHHHH--hhceEEEEEeCCCCCcccHHHHHHHHHHcC--CCe-EEEEecccCC
Q 004615 116 YWNKHRINIIDTPGHVDFT----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYG--VPR-ICFVNKMDRL 185 (742)
Q Consensus 116 ~~~~~~inlIDTPGh~DF~----~ev~~al~--~~DgailVVDa~~Gv~~qT~~v~~~a~~~~--ip~-il~INK~Dr~ 185 (742)
...++.+.||||||..... .++..-.+ ..|..++|+||..| | ..++++..+. ++. -+++||+|..
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g---~--d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG---N--DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc---h--hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 1135779999999976443 33333333 25899999999765 2 3445555432 333 5889999974
No 421
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=94.06 E-value=0.18 Score=51.93 Aligned_cols=65 Identities=8% Similarity=-0.003 Sum_probs=46.7
Q ss_pred ecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHH------HcCCCeEEEEeccc
Q 004615 117 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD------KYGVPRICFVNKMD 183 (742)
Q Consensus 117 ~~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~------~~~ip~il~INK~D 183 (742)
+++|.+.||||||+.+ ..+..++..+|.+|+.+....---..+...+.... ..++|..+++|.++
T Consensus 81 ~~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 81 LQGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred hCCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 3578999999999875 56778999999999888765432223334433322 34778889999997
No 422
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=94.06 E-value=0.16 Score=52.87 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=59.7
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCC-CeEEEEecccCCCCCh--HHHHH
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLGANF--FRTRD 194 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~i-p~il~INK~Dr~~~~~--~~~~~ 194 (742)
+.+.+.|||||+..+ ..+..++..+|.+|+|+.....--..+..+++.+...+. +..+++|+++...... ...++
T Consensus 110 ~~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~ 187 (261)
T TIGR01968 110 EEFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVD 187 (261)
T ss_pred HhCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCchhcccccccCHH
Confidence 468899999999765 356678999999999999876555567777777777665 4568999998532111 11256
Q ss_pred HHHHHhCCc
Q 004615 195 MIVTNLGAK 203 (742)
Q Consensus 195 ~i~~~l~~~ 203 (742)
++.+.++..
T Consensus 188 ~~~~~~~~~ 196 (261)
T TIGR01968 188 DVLEILSIP 196 (261)
T ss_pred HHHHHhCCc
Confidence 677767653
No 423
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.01 E-value=0.19 Score=57.42 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=66.9
Q ss_pred CccEEEEEeecccCcccccceecc-------CC--cc--CCCcH---hHHhh------cceEecceEEE-------EecC
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHE-------GT--AT--MDWME---QEQER------GITITSAATTT-------YWNK 119 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~-------g~--~~--~D~~~---~E~er------GITi~s~~~~~-------~~~~ 119 (742)
.-.+|+++|...+||||....+-. |. .+ +|... .|+-+ |+.+......- .+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 357999999999999985433211 11 12 23211 12221 22222111000 0146
Q ss_pred eEEEEEcCCCccCcHHHHHH---HHH--hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHH
Q 004615 120 HRINIIDTPGHVDFTLEVER---ALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRD 194 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~---al~--~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~ 194 (742)
+.+.||||||.......... .|+ ..+..++|+++..+..... .+++..... .+.-+++||+|.. ..+-.+++
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt-~~lG~aLs 505 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET-GRFGSALS 505 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc-cchhHHHH
Confidence 89999999997544333221 121 1245688999876533322 333433333 3456899999973 33444444
Q ss_pred HHH
Q 004615 195 MIV 197 (742)
Q Consensus 195 ~i~ 197 (742)
-+.
T Consensus 506 v~~ 508 (559)
T PRK12727 506 VVV 508 (559)
T ss_pred HHH
Confidence 433
No 424
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=0.094 Score=51.16 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=76.5
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe----cCeEEEEEcCCCccCcHHHHHHHHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDTPGHVDFTLEVERALR 142 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~----~~~~inlIDTPGh~DF~~ev~~al~ 142 (742)
-+..++++|-...||++.+-+.-.|.- |+.---|+....-.+.+ +..++|.+||.|...|.+----..-
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeF-------e~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI 81 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEF-------EKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYI 81 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccc-------eecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEE
Confidence 368899999999999997766555431 12122344443333333 3489999999998887654433344
Q ss_pred hhceEEEEEeCCCCCcccHHHHHH--HH-HHcCCCeEEEEecccCCC
Q 004615 143 VLDGAICLFDSVAGVEPQSETVWR--QA-DKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 143 ~~DgailVVDa~~Gv~~qT~~v~~--~a-~~~~ip~il~INK~Dr~~ 186 (742)
..-+||+.+|...-+..+...-|. ++ ...++|++++-||.|...
T Consensus 82 ~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 82 QGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred ecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc
Confidence 567999999998877766544442 22 246789999999999654
No 425
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.91 E-value=0.2 Score=55.20 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=64.3
Q ss_pred CccEEEEEeecccCcccccceec-----cCC----ccCCCc---HhHHhh------cceEecceEE---------EE-ec
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVH-----EGT----ATMDWM---EQEQER------GITITSAATT---------TY-WN 118 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~-----~g~----~~~D~~---~~E~er------GITi~s~~~~---------~~-~~ 118 (742)
+.+.|+++|..-+||||.+..+. .|. ..+|.. ..||-+ |+.+...... +. ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34799999999999999555442 221 223332 223322 2222111000 00 01
Q ss_pred CeEEEEEcCCCccCc----HHHHHHHHHh--hceEEEEEeCCCCCcccHHHHHHHHHHcC-CCe-EEEEecccCCC
Q 004615 119 KHRINIIDTPGHVDF----TLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYG-VPR-ICFVNKMDRLG 186 (742)
Q Consensus 119 ~~~inlIDTPGh~DF----~~ev~~al~~--~DgailVVDa~~Gv~~qT~~v~~~a~~~~-ip~-il~INK~Dr~~ 186 (742)
++.+.||||||.... ..++.+.++. .|-.+||+||+.+ ...+..++..++ +++ =++++|+|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk----~~d~~~i~~~F~~~~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK----SKDMIEIITNFKDIHIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC----hHHHHHHHHHhcCCCCCEEEEEcccCCC
Confidence 468999999997554 3344444432 4778999998643 233334444432 333 47899999643
No 426
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.90 E-value=0.16 Score=52.48 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHH-HHHHHHHH--cCCCeEEEEecccCCCCChHHHHHH
Q 004615 119 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK--YGVPRICFVNKMDRLGANFFRTRDM 195 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~-~v~~~a~~--~~ip~il~INK~Dr~~~~~~~~~~~ 195 (742)
.+.+.+||||+. +......++..+|.+|+++....--...+. .+.+.... ...+.-+++|+.|.......+..+.
T Consensus 114 ~~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~ 191 (246)
T TIGR03371 114 ARDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAV 191 (246)
T ss_pred CCCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHH
Confidence 347999999995 455678999999999999987421111122 12222221 2344568999999754444556667
Q ss_pred HHHHhCCc
Q 004615 196 IVTNLGAK 203 (742)
Q Consensus 196 i~~~l~~~ 203 (742)
+++.++..
T Consensus 192 ~~~~~~~~ 199 (246)
T TIGR03371 192 LRQTLGSR 199 (246)
T ss_pred HHHHhccc
Confidence 77777664
No 427
>PHA02518 ParA-like protein; Provisional
Probab=93.86 E-value=0.26 Score=49.51 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=43.9
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcc---cHHHHHHHHHH--cCCCeE-EEEecccCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP---QSETVWRQADK--YGVPRI-CFVNKMDRL 185 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~---qT~~v~~~a~~--~~ip~i-l~INK~Dr~ 185 (742)
..|.+.||||||.. ...+..++..+|.+|+++....--.. ++...++.... .++|.+ ++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 45789999999974 45678899999999999987643222 23333333322 256665 666776643
No 428
>CHL00175 minD septum-site determining protein; Validated
Probab=93.86 E-value=0.18 Score=53.41 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=61.9
Q ss_pred CeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCCCCChH--HHHHH
Q 004615 119 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFF--RTRDM 195 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~~~~~~--~~~~~ 195 (742)
.|.+.|||||+..+ ..+..++..+|.+|+|++....--..+..+++.+.+.+.+. -+++|+++....+-. ...++
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~ 203 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRD 203 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHH
Confidence 58899999999754 46678889999999999876544455667777777777654 488999985422111 13566
Q ss_pred HHHHhCCcceEEEec
Q 004615 196 IVTNLGAKPLVVQLP 210 (742)
Q Consensus 196 i~~~l~~~~~~~~~P 210 (742)
+.+.++.... ..+|
T Consensus 204 l~~~~~~~~~-~~Ip 217 (281)
T CHL00175 204 VQEMLGIPLL-GAIP 217 (281)
T ss_pred HHHHhCCCeE-EEcc
Confidence 7777776433 3455
No 429
>COG1162 Predicted GTPases [General function prediction only]
Probab=93.80 E-value=0.32 Score=51.47 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=35.4
Q ss_pred hceEEEEEeCCCCC--cccHHHHHHHHHHcCCCeEEEEecccCCCCC
Q 004615 144 LDGAICLFDSVAGV--EPQSETVWRQADKYGVPRICFVNKMDRLGAN 188 (742)
Q Consensus 144 ~DgailVVDa~~Gv--~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~ 188 (742)
.|-+|+|+.+.+.- ..+-.+.+-.|...|+.+++++||+|+...+
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~ 126 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDE 126 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcch
Confidence 78889999988753 2244566777889999999999999998644
No 430
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.68 E-value=0.033 Score=52.56 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=36.1
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 131 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~ 131 (742)
..++++|.++.|||+.+..+...... ..-..-|.|.....+.+ ++ .+.|+||||..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~----~~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKV----SVSATPGKTKHFQTIFL--TP-TITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCce----eeCCCCCcccceEEEEe--CC-CEEEEECCCcC
Confidence 38999999999999988777543321 01112345554433333 33 68999999974
No 431
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=93.41 E-value=0.063 Score=52.44 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=38.0
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 130 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh 130 (742)
..+++++|.++.||++.+..+...+... .....|.|.......+. ..+.++||||.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~----~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAK----VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcee----ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4689999999999999887765433210 01113567666555443 56899999996
No 432
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.32 E-value=0.32 Score=51.13 Aligned_cols=86 Identities=21% Similarity=0.199 Sum_probs=52.8
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcc---cHHHHHHHH-HHcCCCeE-EEEecccCCCCChHHH
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP---QSETVWRQA-DKYGVPRI-CFVNKMDRLGANFFRT 192 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~---qT~~v~~~a-~~~~ip~i-l~INK~Dr~~~~~~~~ 192 (742)
+.|.+.||||||.... ..+..++..+|.+|+++....---. ++...++.. ...+++.+ +++|++|. ...
T Consensus 114 ~~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~-----~~~ 187 (267)
T cd02032 114 EEYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK-----TDL 187 (267)
T ss_pred ccCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH-----HHH
Confidence 4689999999997542 2345679999999999987532111 233333322 23567654 78999984 233
Q ss_pred HHHHHHHhCCcceEEEec
Q 004615 193 RDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 193 ~~~i~~~l~~~~~~~~~P 210 (742)
++++.+.++..... .+|
T Consensus 188 i~~~~~~~~~~vl~-~Ip 204 (267)
T cd02032 188 IDKFVEAVGMPVLA-VLP 204 (267)
T ss_pred HHHHHHhCCCCEEE-Eec
Confidence 45555556654433 344
No 433
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=93.31 E-value=0.17 Score=39.38 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=50.6
Q ss_pred EEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHHhhccCCce
Q 004615 655 VVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGR 712 (742)
Q Consensus 655 I~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~ 712 (742)
|.+|-...|.|-..|.+..+.|.+.+..+ .+.+...+|..+.-.|...|..+|+|+
T Consensus 1 i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~--~V~~~v~v~~~~~~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 1 ISCDYSQYGKVERLLEQNGIEIVDEDYTD--DVTLTVAVPEEEVEEFKAQLTDLTSGR 56 (56)
T ss_dssp EEE-CCCHHHHHHHHHHTTTEEEEEEECT--TEEEEEEEECCCHHHHHHHHHHHTTT-
T ss_pred CEechhhHHHHHHHHHHCCCEEEcceecc--eEEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 57889999999999999999999999875 389999999999999999999999996
No 434
>PRK11670 antiporter inner membrane protein; Provisional
Probab=93.31 E-value=0.34 Score=53.53 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=61.8
Q ss_pred ecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCCCCC---hH--
Q 004615 117 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN---FF-- 190 (742)
Q Consensus 117 ~~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~~~---~~-- 190 (742)
|++|-+.|||||.......-...++..+|++|+|+-...--...+.+.++...+.++|++ +++|+.|....+ ..
T Consensus 213 ~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~i 292 (369)
T PRK11670 213 WPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPI 292 (369)
T ss_pred hccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhh
Confidence 567899999998764433334455667899999986643222345556677777899987 889998754221 11
Q ss_pred ---HHHHHHHHHhCCcceEEEecc
Q 004615 191 ---RTRDMIVTNLGAKPLVVQLPV 211 (742)
Q Consensus 191 ---~~~~~i~~~l~~~~~~~~~Pi 211 (742)
...+.+.+.++.... -++|.
T Consensus 293 f~~~~~~~lae~~~~~ll-~~IP~ 315 (369)
T PRK11670 293 FGTGGAEKLAEKYHTQLL-GQMPL 315 (369)
T ss_pred cccchHHHHHHHcCCcEE-EEeCC
Confidence 146788888877544 35664
No 435
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.13 E-value=0.18 Score=48.14 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=40.4
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEeccc
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 183 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~D 183 (742)
.++.+.||||||.. ..+...++.+|-+|+|+....+ -...+. ...-...--+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~---D~y~~~-k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG---DDIQAI-KAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch---hHHHHh-hhhHhhhcCEEEEeCCC
Confidence 37899999999953 4456799999999999977632 122222 22333344589999998
No 436
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=93.06 E-value=0.41 Score=56.16 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=60.8
Q ss_pred EEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCCCccccCce
Q 004615 357 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGET 434 (742)
Q Consensus 357 ~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~~~~tGdT 434 (742)
+-|-++|..+..|.++-+||..|++++|..+.+.+.+.....++|-.+. +...+|+++..|+-|+| .+..+++.||.
T Consensus 495 a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~ 573 (587)
T TIGR00487 495 AEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLK-RFKDDVKEVSNGYECGIGIKNYNDIKEGDI 573 (587)
T ss_pred EEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhh-ccCccccEECCCCEEEEEEeccccCCCCCE
Confidence 3455666666668999999999999999999988877654444454444 34478999999999998 45667899998
Q ss_pred ee
Q 004615 435 LC 436 (742)
Q Consensus 435 L~ 436 (742)
|-
T Consensus 574 i~ 575 (587)
T TIGR00487 574 IE 575 (587)
T ss_pred EE
Confidence 84
No 437
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.94 E-value=0.18 Score=55.98 Aligned_cols=116 Identities=17% Similarity=0.253 Sum_probs=64.6
Q ss_pred ccEEEEEeecccCcccccceec---------cCC----ccCCCc---HhHHhh------cceEecceEE-------EEec
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVH---------EGT----ATMDWM---EQEQER------GITITSAATT-------TYWN 118 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~---------~g~----~~~D~~---~~E~er------GITi~s~~~~-------~~~~ 118 (742)
.++|+++|..-+||||.+..+. .|. ...|.. ..||-+ |+.+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4789999999999998554432 122 223331 122222 2222111100 0114
Q ss_pred CeEEEEEcCCCccCc----HHHHHHHHHhh--c-eEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 119 KHRINIIDTPGHVDF----TLEVERALRVL--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 119 ~~~inlIDTPGh~DF----~~ev~~al~~~--D-gailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
++.+.||||||..-. ..++..-+..+ + -.+||+||+.|-... ..+++.....+ +-=++++|+|-.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeccCC
Confidence 789999999996532 24555555543 3 589999999873322 23444333322 224789999953
No 438
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=92.48 E-value=0.27 Score=53.83 Aligned_cols=81 Identities=11% Similarity=0.053 Sum_probs=56.6
Q ss_pred cEEEEEeecccCcccccceeccCCc--cCCCcHhHHhhcceEecceEEEEecC-----------------eEEEEEcCCC
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTA--TMDWMEQEQERGITITSAATTTYWNK-----------------HRINIIDTPG 129 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~--~~D~~~~E~erGITi~s~~~~~~~~~-----------------~~inlIDTPG 129 (742)
..++|+|-+++||||+...+...+. .-++ + -.|+......+.+.+ .++.++|.||
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y-p-----ftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaG 76 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP-P-----FTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAG 76 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC-C-----CCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccc
Confidence 4789999999999998776654322 1122 1 123444444444433 4789999999
Q ss_pred ccC-------cHHHHHHHHHhhceEEEEEeCCC
Q 004615 130 HVD-------FTLEVERALRVLDGAICLFDSVA 155 (742)
Q Consensus 130 h~D-------F~~ev~~al~~~DgailVVDa~~ 155 (742)
.+. +.....+-+|.+|+.+.|||+.+
T Consensus 77 lv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 77 LVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 764 55678889999999999999964
No 439
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.46 E-value=0.45 Score=51.57 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=56.9
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHH
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 197 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~ 197 (742)
+.|.+.+||||+..+ ..+..++..+|.+|+|++..---...+.++++.+...+...-+++|+..+.... .+++.
T Consensus 203 ~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~~~~~~----~~~i~ 276 (322)
T TIGR03815 203 RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPAPAGLD----PEEIA 276 (322)
T ss_pred hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCC----HHHHH
Confidence 458899999999865 447889999999999998754333456667777776665555677875543333 46677
Q ss_pred HHhCCcc
Q 004615 198 TNLGAKP 204 (742)
Q Consensus 198 ~~l~~~~ 204 (742)
+.++...
T Consensus 277 ~~lg~~v 283 (322)
T TIGR03815 277 ESLGLPL 283 (322)
T ss_pred HHhCCCc
Confidence 7777643
No 440
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=92.39 E-value=0.73 Score=55.66 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=61.9
Q ss_pred EEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCCCccccCce
Q 004615 357 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGET 434 (742)
Q Consensus 357 ~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~~~~tGdT 434 (742)
|-|-.+|..+..|.++-++|..|+++.|..+.+.+.+...-.++|-.+. +...+|+++..|.-|+| .+..+++.||.
T Consensus 697 a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk-~~k~~v~ev~~g~ecgi~~~~~~d~~~gD~ 775 (787)
T PRK05306 697 AEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLK-RFKDDVKEVRAGYECGIGLENYNDIKEGDI 775 (787)
T ss_pred EEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhc-ccCcCccEeCCCCEEEEEeeccccCCCCCE
Confidence 4555666666779999999999999999999999887654444444444 34478999999999998 46677999999
Q ss_pred ee
Q 004615 435 LC 436 (742)
Q Consensus 435 L~ 436 (742)
|-
T Consensus 776 ie 777 (787)
T PRK05306 776 IE 777 (787)
T ss_pred EE
Confidence 84
No 441
>PRK10818 cell division inhibitor MinD; Provisional
Probab=92.34 E-value=0.45 Score=50.00 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=58.4
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHc---------CCCeEEEEecccCCCCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY---------GVPRICFVNKMDRLGAN 188 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~---------~ip~il~INK~Dr~~~~ 188 (742)
..|.+.+||||+... .....++..+|.+|+++++..---..+..+++.+... +++..+++|++|.....
T Consensus 112 ~~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~ 189 (270)
T PRK10818 112 MDFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 (270)
T ss_pred cCCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHhhhh
Confidence 468999999998865 4567789999999999998644333455556554321 23346889999864321
Q ss_pred --hHHHHHHHHHHhCCcceEEEec
Q 004615 189 --FFRTRDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 189 --~~~~~~~i~~~l~~~~~~~~~P 210 (742)
....++++.+.++... .-++|
T Consensus 190 ~~~~~~~~~~~~~~g~~~-~~~Ip 212 (270)
T PRK10818 190 RGDMLSMEDVLEILRIKL-VGVIP 212 (270)
T ss_pred hcccccHHHHHHHhCCcE-EEEec
Confidence 1123566777777653 24455
No 442
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=92.31 E-value=0.82 Score=43.16 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=74.1
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecc-eEEEEec---CeEEEEEcCCCccCcHHHHH-HHHH
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYWN---KHRINIIDTPGHVDFTLEVE-RALR 142 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~-~~~~~~~---~~~inlIDTPGh~DF~~ev~-~al~ 142 (742)
.-.|.++|..-.||+..+-.+--|+-+...-..| ||.-. ..+++.+ .-.+.|-||.|..+...|.- ..+.
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~p-----TiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHP-----TIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCcccc-----chhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 3578999999999999765555554333322111 22211 1233332 25788999999999866664 4567
Q ss_pred hhceEEEEEeCCCCCcccHHHHHHH-HH----HcCCCeEEEEecccCCC
Q 004615 143 VLDGAICLFDSVAGVEPQSETVWRQ-AD----KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 143 ~~DgailVVDa~~Gv~~qT~~v~~~-a~----~~~ip~il~INK~Dr~~ 186 (742)
.+|+-+||-|..+--.-|-..+++. +. +..+|+++.-||.||..
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~ 132 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE 132 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc
Confidence 8899999999876544454444432 22 24589999999999863
No 443
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.26 E-value=0.36 Score=48.90 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=53.4
Q ss_pred ecCeEEEEEcCCCccCcHHHHHHH--HHhhceEEEEEeCCCCCcc-cHHHHHHHHHHc----CCCeE-EEEecccCCCCC
Q 004615 117 WNKHRINIIDTPGHVDFTLEVERA--LRVLDGAICLFDSVAGVEP-QSETVWRQADKY----GVPRI-CFVNKMDRLGAN 188 (742)
Q Consensus 117 ~~~~~inlIDTPGh~DF~~ev~~a--l~~~DgailVVDa~~Gv~~-qT~~v~~~a~~~----~ip~i-l~INK~Dr~~~~ 188 (742)
+++|.+.||||||......- ... ++.+|.+|++++... ... -...+++...+. +++.. +++||+|.. .
T Consensus 114 ~~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~ 189 (212)
T cd02117 114 EDDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--R 189 (212)
T ss_pred ccCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--c
Confidence 56899999999997632111 122 348999999998642 111 123444444443 55554 899999954 2
Q ss_pred hHHHHHHHHHHhCCcceE
Q 004615 189 FFRTRDMIVTNLGAKPLV 206 (742)
Q Consensus 189 ~~~~~~~i~~~l~~~~~~ 206 (742)
-...++++.+.++.....
T Consensus 190 ~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 190 ETELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 344677888877765443
No 444
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=92.25 E-value=0.064 Score=57.17 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=39.2
Q ss_pred cEEEEEeecccCcccccceeccCC-----ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGT-----ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~-----~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
+.++++|+.++||||++..+.... .+. ....+-+++|.......+... ..|+||||..+|.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~--~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEIS--EKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccccee--ccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 689999999999999776554321 111 112233456666555444333 3799999998873
No 445
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=92.08 E-value=0.064 Score=55.78 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=40.5
Q ss_pred cEEEEEeecccCcccccceeccCC--ccCCCc-HhHHhhcceEecceEEEEecCeEEEEEcCCCccCc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGT--ATMDWM-EQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~--~~~D~~-~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF 133 (742)
+.++++|+++.||||+++.+.... .+-+-. ...+-|.+|.......+ .+ -.||||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 578999999999999888775432 111111 12234557777766666 33 379999998765
No 446
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=92.07 E-value=0.26 Score=48.71 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=56.4
Q ss_pred CeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCC--e-EEEEecccCCCCC-hHHHHH
Q 004615 119 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP--R-ICFVNKMDRLGAN-FFRTRD 194 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip--~-il~INK~Dr~~~~-~~~~~~ 194 (742)
.+.+.|||||+..... +..++..+|.+|++++...--...+..+.+.+.+.+.+ . -+++||.+....+ .++.+.
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~~~~~~~~ 171 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNESKLQEEIE 171 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHHHHHHHHH
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccchHHHHHH
Confidence 3899999999987655 78899999999999998653334456666777777643 3 4899999876433 444444
Q ss_pred HHHHHh
Q 004615 195 MIVTNL 200 (742)
Q Consensus 195 ~i~~~l 200 (742)
.+...+
T Consensus 172 ~~~~~~ 177 (195)
T PF01656_consen 172 EIEREL 177 (195)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 444444
No 447
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.05 E-value=0.06 Score=51.99 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=34.3
Q ss_pred cEEEEEeecccCcccccceeccCC-ccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
+.++++|+.-.||||+++.+.... .-+....+.-.||-.-.....-+.+ .....+|||||..+|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l-~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL-PDGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE-TTSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec-CCCcEEEECCCCCccc
Confidence 789999999999999988876542 1111122222344333233333333 2347899999988874
No 448
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=92.01 E-value=0.44 Score=50.17 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=50.6
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcc---cHHHHHHH-HHHcCCCeE-EEEecccCCCCChHHH
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP---QSETVWRQ-ADKYGVPRI-CFVNKMDRLGANFFRT 192 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~---qT~~v~~~-a~~~~ip~i-l~INK~Dr~~~~~~~~ 192 (742)
++|.+.||||||...-. .+..++..+|.+|+++....---. ++...++. ....+++.+ +++|+.+. ...
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----~~~ 189 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----TDL 189 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----HHH
Confidence 57899999999975322 245678999999999976432111 22233332 224567765 88999763 234
Q ss_pred HHHHHHHhCCcce
Q 004615 193 RDMIVTNLGAKPL 205 (742)
Q Consensus 193 ~~~i~~~l~~~~~ 205 (742)
++++.+.++...+
T Consensus 190 ~~~~~~~~g~~vl 202 (270)
T PRK13185 190 IDKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHHcCCCEE
Confidence 5566666665443
No 449
>CHL00189 infB translation initiation factor 2; Provisional
Probab=91.89 E-value=0.7 Score=55.35 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=59.4
Q ss_pred EEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCCCccccCce
Q 004615 357 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGET 434 (742)
Q Consensus 357 ~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~~~~tGdT 434 (742)
|-|-++|..+. |.++-+||.+|+++.|..+.+.+.+.....++|-.+. +...+|+++..|.-|+| .+..+++.||+
T Consensus 652 a~v~~vF~~~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk-~~k~~v~ev~~g~ecgi~i~~~~d~~~gD~ 729 (742)
T CHL00189 652 AEVKTVFPLAK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLK-RVKEDVEEAQEGNECGIFIEEFQLWQSGDK 729 (742)
T ss_pred EEeeEEEecCC-CEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHh-hcCccccEeCCCCEEEEEeeCCCCCCcCCE
Confidence 34445555555 8999999999999999999998887654444444444 34478999999999998 45667899999
Q ss_pred ee
Q 004615 435 LC 436 (742)
Q Consensus 435 L~ 436 (742)
|-
T Consensus 730 ie 731 (742)
T CHL00189 730 IH 731 (742)
T ss_pred EE
Confidence 84
No 450
>PRK13760 putative RNA-associated protein; Provisional
Probab=91.74 E-value=0.36 Score=49.18 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=54.6
Q ss_pred eeEEEEEeCCcchHHHHHHHhcCCceecccccCCCCeEEEEEEechhhhhchHHHhhccCCceEEEE
Q 004615 650 IMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYI 716 (742)
Q Consensus 650 i~~~eI~~p~~~~g~V~~~L~~rrg~i~~~~~~~~~~~~i~a~~P~~e~~gy~~~Lrs~T~G~a~~~ 716 (742)
=|++.|.+|.+|.|.+++.|.+ -|.|...+..+++.....+.+|-...-.|.+.|+.+|+|.|...
T Consensus 163 ~~~~~v~iP~~~~~~~~~~l~~-~~~i~~eew~~dgs~~~v~~Ip~G~~~~~~~~~~~~tkG~~~~~ 228 (231)
T PRK13760 163 KARIAVKIPPEYAGKAYGELRK-FGEIKKEEWQSDGSWIAVLEIPAGLQNEFYDKLNKLTKGEAETK 228 (231)
T ss_pred eEEEEEEECHHHHHHHHHHHHh-hcccchhhccCCCcEEEEEEECCccHHHHHHHHHHhcCCcEEEE
Confidence 3678899999999999999998 77887776544345677789999877789999999999999764
No 451
>PRK12288 GTPase RsgA; Reviewed
Probab=91.62 E-value=0.098 Score=57.24 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=38.9
Q ss_pred EEEEEeecccCcccccceeccCCc--cCCC-cHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGTA--TMDW-MEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~~--~~D~-~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
.++++|.++.||||+++.+..... +-+- ....+-|.+|.......+.-+ ..||||||...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 589999999999998888764321 1111 112233445655555555333 3599999998773
No 452
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=91.62 E-value=0.68 Score=48.09 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=51.9
Q ss_pred eEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 120 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
..+.+||||--. .-.|.+++..+|.||+|--.+-----..+++++.+..+|+|..++|||-+.-
T Consensus 164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred cceeEEecCCCC--CChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 478999998643 2469999999999999998765333457888999999999999999999543
No 453
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=91.27 E-value=0.51 Score=47.34 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=41.7
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHH----H--hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERAL----R--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al----~--~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
+++.+.||||||......+...-| + ..|-.++|+||..|-. ....+.+.....++.- ++++|+|-.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~~-lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYEAFGIDG-LILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTCE-EEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhhcccCce-EEEEeecCC
Confidence 347799999999876654432222 2 3578999999988643 2234444444455554 559999964
No 454
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=91.13 E-value=0.48 Score=49.79 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=50.8
Q ss_pred ecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHH----HcCCCeE-EEEecccCCCCChHH
Q 004615 117 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPRI-CFVNKMDRLGANFFR 191 (742)
Q Consensus 117 ~~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~----~~~ip~i-l~INK~Dr~~~~~~~ 191 (742)
+++|.+.||||||...-. .+..++..+|.+|+++...----..+..+++.+. ..+++.. +++|+.|.. .
T Consensus 113 ~~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~ 186 (268)
T TIGR01281 113 LDDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----D 186 (268)
T ss_pred cccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----H
Confidence 357999999999864311 1234689999999988653211122333333222 3456654 788998854 4
Q ss_pred HHHHHHHHhCCcce
Q 004615 192 TRDMIVTNLGAKPL 205 (742)
Q Consensus 192 ~~~~i~~~l~~~~~ 205 (742)
.++++.+.++....
T Consensus 187 ~~~~~~~~~~~~vl 200 (268)
T TIGR01281 187 LIERFNERVGMPVL 200 (268)
T ss_pred HHHHHHHHcCCCEE
Confidence 56666666665543
No 455
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.89 E-value=0.66 Score=51.69 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=38.2
Q ss_pred cCeEEEEEcCCCccCcHHH----HHHHHHhh-----ceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCC
Q 004615 118 NKHRINIIDTPGHVDFTLE----VERALRVL-----DGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 185 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~e----v~~al~~~-----DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~ 185 (742)
.++.+.||||||+.....+ +..-+++. .-.+||+||..|-.. ...+++.-.. ++. =++++|+|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f~~--~~~~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAYES--LNYRRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHhcC--CCCCEEEEEcccCC
Confidence 4778999999998644332 22223332 257899999876322 2222222222 333 4789999964
No 456
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=90.82 E-value=0.63 Score=49.11 Aligned_cols=86 Identities=10% Similarity=-0.007 Sum_probs=51.5
Q ss_pred EecCeEEEEEcCCCccCcH-HHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHH---HcCCCeE-EEEecccCCCCChH
Q 004615 116 YWNKHRINIIDTPGHVDFT-LEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD---KYGVPRI-CFVNKMDRLGANFF 190 (742)
Q Consensus 116 ~~~~~~inlIDTPGh~DF~-~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~---~~~ip~i-l~INK~Dr~~~~~~ 190 (742)
.|++|-+.||||||..--. .-...++..+|.+|+++....---.....+++.+. +.+++.. +++|+.+.. . -.
T Consensus 113 ~~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~-~-~~ 190 (273)
T PRK13232 113 YTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD-G-ER 190 (273)
T ss_pred ccccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC-c-cH
Confidence 4578999999999864211 11122356899999999764311111223334333 3466664 788976532 1 25
Q ss_pred HHHHHHHHHhCCc
Q 004615 191 RTRDMIVTNLGAK 203 (742)
Q Consensus 191 ~~~~~i~~~l~~~ 203 (742)
++++++++.++..
T Consensus 191 ~~~e~l~~~~~~~ 203 (273)
T PRK13232 191 ELLEAFAKKLGSQ 203 (273)
T ss_pred HHHHHHHHHhCCC
Confidence 6788888888764
No 457
>COG1161 Predicted GTPases [General function prediction only]
Probab=90.73 E-value=0.14 Score=55.58 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=41.1
Q ss_pred cEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 131 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~ 131 (742)
.++.++|-+|.||||.++.+-......+... -|+|-....+.+. ..+.|+||||..
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~----PG~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNR----PGTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCC----CceecceEEEEcC---CCeEEecCCCcC
Confidence 5699999999999999988766553333321 3888766666554 449999999954
No 458
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=90.73 E-value=0.64 Score=49.62 Aligned_cols=86 Identities=16% Similarity=0.045 Sum_probs=53.2
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHH----cCCCeE-EEEecccCCCCChHHH
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRT 192 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~----~~ip~i-l~INK~Dr~~~~~~~~ 192 (742)
++|.+.||||||.... .....++..||.+|++++...---..+..+++.+++ .+++.. +++|+.|. ...
T Consensus 114 ~~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----~~~ 187 (290)
T CHL00072 114 YEYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK-----RDL 187 (290)
T ss_pred ccCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc-----hhH
Confidence 4688999999997432 224467889999999998753211223333333322 245554 88999873 244
Q ss_pred HHHHHHHhCCcceEEEec
Q 004615 193 RDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 193 ~~~i~~~l~~~~~~~~~P 210 (742)
++++.+.++...+. .+|
T Consensus 188 ~~~~~~~~~~~vl~-~Ip 204 (290)
T CHL00072 188 IDKYVEACPMPVLE-VLP 204 (290)
T ss_pred HHHHHHHcCCceEE-ECC
Confidence 56666777766544 555
No 459
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=90.68 E-value=1 Score=45.88 Aligned_cols=68 Identities=15% Similarity=0.009 Sum_probs=51.0
Q ss_pred CeEEEEEcCCCccCcHHH-HHHHHHh--hceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCCC
Q 004615 119 KHRINIIDTPGHVDFTLE-VERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG 186 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~e-v~~al~~--~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~~ 186 (742)
+|.+.++|||-....... +...+.. +|++++|+.....-..+++..++.++..+++. -+++|+.....
T Consensus 113 ~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~ 184 (217)
T cd02035 113 LYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPAE 184 (217)
T ss_pred CCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCcc
Confidence 388999999964332222 2333333 48999999998877888999999999999987 48999987653
No 460
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=90.58 E-value=0.66 Score=48.94 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=50.8
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEec
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNK 181 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK 181 (742)
+.|.+.|||||--.. ..+.....+.+|++|+|+.+..--..+.+...+++.+.+.+++ +|+|+
T Consensus 211 ~~yD~ViiD~pp~~~-~~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 211 GDYDVVIVDTPSAEH-SSDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred hcCCEEEEeCCCccc-ccHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 358899999997533 3456667789999999999877666677888888999999988 88885
No 461
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=90.58 E-value=0.3 Score=49.74 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=56.1
Q ss_pred cCeEEEEEcCCCccC--cHHH---HHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCC-CCChH
Q 004615 118 NKHRINIIDTPGHVD--FTLE---VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL-GANFF 190 (742)
Q Consensus 118 ~~~~inlIDTPGh~D--F~~e---v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~-~~~~~ 190 (742)
+++.+.+||+||... +... ...+...-+-+|+|++..-|--.++...++.+...++++. +++|++|.. .....
T Consensus 102 ~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~~~~~~~ 181 (222)
T PRK00090 102 QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPPEPGLRHA 181 (222)
T ss_pred hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCCcchhHHH
Confidence 468899999998631 1111 1111112245788888766655667777788888898875 788999865 33345
Q ss_pred HHHHHHHHHhCCc
Q 004615 191 RTRDMIVTNLGAK 203 (742)
Q Consensus 191 ~~~~~i~~~l~~~ 203 (742)
...+.+.+.++..
T Consensus 182 ~~~~~l~~~~gi~ 194 (222)
T PRK00090 182 ENLATLERLLPAP 194 (222)
T ss_pred HHHHHHHHHcCCC
Confidence 6677888777653
No 462
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=90.57 E-value=0.48 Score=60.31 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=64.5
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEe-cCeEEEEEcCCCccC--------cHHHH
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD--------FTLEV 137 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~-~~~~inlIDTPGh~D--------F~~ev 137 (742)
..+=..|+|.+.+||||.+.+..---.+.+.+..+..+|+ ...-+|.| -...-.||||+|..- -..+.
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~---~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGV---GGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhCCCCCcCchhhccccccCC---CCCcccceEecCCEEEEcCCCccccCCCcccccHHHH
Confidence 3467999999999999977654111112221111222232 11224554 334566999999421 12223
Q ss_pred HHHHH---------hhceEEEEEeCCCCCcccH---HHHHH----------HHHHcCCCeEEEEecccCC
Q 004615 138 ERALR---------VLDGAICLFDSVAGVEPQS---ETVWR----------QADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 138 ~~al~---------~~DgailVVDa~~Gv~~qT---~~v~~----------~a~~~~ip~il~INK~Dr~ 185 (742)
..-|. -.||+|++||+.+=..... ..+.+ ......+|+-++++|||+.
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 22222 3799999999875332111 11111 1122468999999999986
No 463
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.52 E-value=0.84 Score=50.20 Aligned_cols=63 Identities=24% Similarity=0.184 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCccCcHH----HHHHHHHh--hceEEEEEeCCCCCcccHHHHHHHHHHc-CCCe-EEEEecccCC
Q 004615 119 KHRINIIDTPGHVDFTL----EVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKY-GVPR-ICFVNKMDRL 185 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~----ev~~al~~--~DgailVVDa~~Gv~~qT~~v~~~a~~~-~ip~-il~INK~Dr~ 185 (742)
++.+.||||||+..... |+...+.. .|..++|+++. ...+ .+.+.+..+ .+++ -++++|+|-.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~--d~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSA--DVMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHH--HHHHHHHhcCcCCCCEEEEEcccCC
Confidence 57899999999854433 33333332 25667777763 2222 223333333 2433 4789999964
No 464
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=90.50 E-value=0.57 Score=52.50 Aligned_cols=85 Identities=8% Similarity=0.079 Sum_probs=57.3
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHH-------HHHHHHHc--CC--CeE-EEEecccCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-------VWRQADKY--GV--PRI-CFVNKMDRL 185 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~-------v~~~a~~~--~i--p~i-l~INK~Dr~ 185 (742)
++|.+.|||||+...+ .+..+|..+|.+|+.+.+..---..+.. +++...+. ++ ..+ +++|++|.-
T Consensus 250 ~~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~ 327 (405)
T PRK13869 250 DDYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ 327 (405)
T ss_pred ccCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC
Confidence 3689999999998654 6888999999999998764321111222 23334343 22 233 799999965
Q ss_pred CCChHHHHHHHHHHhCCcc
Q 004615 186 GANFFRTRDMIVTNLGAKP 204 (742)
Q Consensus 186 ~~~~~~~~~~i~~~l~~~~ 204 (742)
...-.++.+.+++.++...
T Consensus 328 ~~~~~~~~~~l~~~~~~~v 346 (405)
T PRK13869 328 DAPQTKVAALLRNMFEDHV 346 (405)
T ss_pred CcHHHHHHHHHHHHhhhhh
Confidence 5555668888888887643
No 465
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=90.41 E-value=0.27 Score=46.97 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=35.3
Q ss_pred CccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCc
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 130 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh 130 (742)
...++.++|.+++||++++..+..+. .... ....|.|... .+...+..++|+||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~---~~~~~~t~~~---~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SAST---SPSPGYTKGE---QLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-cccc---CCCCCeeeee---EEEEcCCCEEEEECcCC
Confidence 35678999999999999887765322 1100 0113444332 22223457999999993
No 466
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=90.23 E-value=1.3 Score=50.05 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=62.2
Q ss_pred EEEEEEEecCCCceEEEEEEEeeEecCCCEEEeCCCCceEecceEEEeecCceeecccccCCCEEEE--cCCCccccCce
Q 004615 357 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGET 434 (742)
Q Consensus 357 ~~V~k~~~~~~~G~l~~~RV~sG~L~~gd~v~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I--~gl~~~~tGdT 434 (742)
+.+-+++.-+..|.++-++|..|+++.|..+...+.+....-++|-.++ +..++++++.+|.-|+| .+-++++.||+
T Consensus 416 ~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk-~~kddv~ev~~G~ecgI~i~~~~di~~gD~ 494 (509)
T COG0532 416 AEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLK-RFKDDVKEVRKGQECGIAIENYRDIKEGDI 494 (509)
T ss_pred eEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeee-ccCccHhHhccCcEEEEEecCcccCCCCCE
Confidence 4556666677789999999999999999999998766544335665555 34489999999999998 45567889998
Q ss_pred ee
Q 004615 435 LC 436 (742)
Q Consensus 435 L~ 436 (742)
|-
T Consensus 495 le 496 (509)
T COG0532 495 LE 496 (509)
T ss_pred EE
Confidence 84
No 467
>PRK13796 GTPase YqeH; Provisional
Probab=90.05 E-value=0.15 Score=56.27 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=38.3
Q ss_pred ccEEEEEeecccCcccccceeccCCc-cCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCcc
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTA-TMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 131 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~-~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~ 131 (742)
-+++.++|.+|.||||+++++-...+ ..+....-...|.|.....+.+ .+ ...|+||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--DD-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--CC-CcEEEECCCcc
Confidence 36899999999999999888753210 0000011223677876554443 22 25899999974
No 468
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=89.99 E-value=0.59 Score=50.70 Aligned_cols=84 Identities=13% Similarity=0.055 Sum_probs=62.8
Q ss_pred hhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCc-----------ccHHHHHHHHHH-
Q 004615 103 ERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-----------PQSETVWRQADK- 170 (742)
Q Consensus 103 erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~-----------~qT~~v~~~a~~- 170 (742)
.|--|.....+.|.+++..+-++|.+|+.-=..-+......++++|+|++-++=-+ -++..+++....
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 45667777788999999999999999986656667778888999999998765311 223344444333
Q ss_pred ---cCCCeEEEEecccCCC
Q 004615 171 ---YGVPRICFVNKMDRLG 186 (742)
Q Consensus 171 ---~~ip~il~INK~Dr~~ 186 (742)
.+.++|+|+||.|+..
T Consensus 258 ~~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDLFE 276 (354)
T ss_pred cccccCcEEEEeecHHHHH
Confidence 3579999999999754
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.87 E-value=0.53 Score=53.56 Aligned_cols=114 Identities=17% Similarity=0.263 Sum_probs=61.9
Q ss_pred ccEEEEEeecccCcccccceec------cCC-----ccCCCc---HhH------HhhcceEecceEE-------EEecCe
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVH------EGT-----ATMDWM---EQE------QERGITITSAATT-------TYWNKH 120 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~------~g~-----~~~D~~---~~E------~erGITi~s~~~~-------~~~~~~ 120 (742)
-..|+++|..-+||||.+..+. .|. ...|.. -.| +.+|+.+...... ....++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 3689999999999999544432 222 122331 002 2345544322221 112467
Q ss_pred EEEEEcCCCccCcHHHHHHHHHh-hce-----EEEEEeCCCCCcccHHHHHHHHHHcC-CC-eEEEEecccCC
Q 004615 121 RINIIDTPGHVDFTLEVERALRV-LDG-----AICLFDSVAGVEPQSETVWRQADKYG-VP-RICFVNKMDRL 185 (742)
Q Consensus 121 ~inlIDTPGh~DF~~ev~~al~~-~Dg-----ailVVDa~~Gv~~qT~~v~~~a~~~~-ip-~il~INK~Dr~ 185 (742)
.+.+|||+|..-....+...+.. .+. .+||+|+..+- ..+.+.+..++ ++ .-+++||+|-.
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~----~~l~~i~~~f~~~~~~g~IlTKlDet 404 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG----DTLNEVVQAYRGPGLAGCILTKLDEA 404 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH----HHHHHHHHHhccCCCCEEEEeCCCCc
Confidence 89999999954333333333332 232 68999998653 33333333322 22 24678999954
No 470
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=89.59 E-value=0.73 Score=51.35 Aligned_cols=91 Identities=11% Similarity=0.123 Sum_probs=59.0
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCC----CCc---ccHHHHHHHHHHcC----CCe-EEEEecccCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----GVE---PQSETVWRQADKYG----VPR-ICFVNKMDRL 185 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~----Gv~---~qT~~v~~~a~~~~----ip~-il~INK~Dr~ 185 (742)
+.|.+.|||||+..+ ..+..++..+|.+|+++.... +.. .....+++.+.+.+ +.. -+++|+.|..
T Consensus 233 ~~yD~IiiD~pp~~~--~~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 310 (387)
T TIGR03453 233 DDYDVVVIDCPPQLG--FLTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPN 310 (387)
T ss_pred hcCCEEEEeCCccHh--HHHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCC
Confidence 368999999999865 468899999999999987642 111 01112333444433 223 3789999976
Q ss_pred CCChHHHHHHHHHHhCCcceEEEec
Q 004615 186 GANFFRTRDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 186 ~~~~~~~~~~i~~~l~~~~~~~~~P 210 (742)
.....+..+.+++.++.....-.+|
T Consensus 311 ~~~~~~~~~~l~~~~~~~vl~~~I~ 335 (387)
T TIGR03453 311 DGPQAQMVAFLRSLFGDHVLTNPML 335 (387)
T ss_pred CccHHHHHHHHHHHhcccccccccc
Confidence 5556677888888887654433333
No 471
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=89.45 E-value=1.1 Score=45.73 Aligned_cols=65 Identities=25% Similarity=0.343 Sum_probs=47.9
Q ss_pred cCeEEEEEcCC-CccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCC
Q 004615 118 NKHRINIIDTP-GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 185 (742)
Q Consensus 118 ~~~~inlIDTP-Gh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~ 185 (742)
+.+.+.++||= |..-|..- ..+.+|..|+|+|.+.---.-.+++-+++.+.++.+ .+++||+|-.
T Consensus 132 ~~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 45789999994 54446533 345789999999987543445677888899999555 5889999965
No 472
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.33 E-value=0.86 Score=51.34 Aligned_cols=126 Identities=11% Similarity=0.157 Sum_probs=67.3
Q ss_pred ccEEEEEeecccCccccccee-------ccCC--cc--CCCc---HhHHh------hcceEecceEEE-------EecCe
Q 004615 68 RRQFSVFAMAAEGRNYKIGEV-------HEGT--AT--MDWM---EQEQE------RGITITSAATTT-------YWNKH 120 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v-------~~g~--~~--~D~~---~~E~e------rGITi~s~~~~~-------~~~~~ 120 (742)
-++|+++|..-+||||.+..+ ..|. .+ +|.. ..|+- .|+.+......- ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 468999999999999843322 2233 22 3331 11221 233322211110 01468
Q ss_pred EEEEEcCCCccCcH----HHHHHHHHhh---ceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHH
Q 004615 121 RINIIDTPGHVDFT----LEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTR 193 (742)
Q Consensus 121 ~inlIDTPGh~DF~----~ev~~al~~~---DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~ 193 (742)
.+.||||||+..+. .++..-++.+ +-+.+|+++..+. ...+.+++.....++ -=++++|+|.. ..+..++
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet-~~~G~i~ 377 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET-SSLGSIL 377 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc-ccccHHH
Confidence 89999999986653 3333333422 3668999987542 223334444444332 24889999973 3344444
Q ss_pred HHH
Q 004615 194 DMI 196 (742)
Q Consensus 194 ~~i 196 (742)
+-+
T Consensus 378 ~~~ 380 (424)
T PRK05703 378 SLL 380 (424)
T ss_pred HHH
Confidence 433
No 473
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=89.20 E-value=0.36 Score=54.85 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=72.2
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecceEEEEecCeEEEEEcCCCccCcHHHHHHHHHhhceE
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGA 147 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~~ev~~al~~~Dga 147 (742)
..+|+++|-...|||+++=++-.- .+-|.-|. +---|||=.. +.=...-..++||+--.+=...+...+|.+|.+
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~e-ef~~~VP~-rl~~i~IPad---vtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEE-EFVDAVPR-RLPRILIPAD---VTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhh-hccccccc-cCCccccCCc---cCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 468999999999999977665331 22222111 0012555422 222344589999997777667778899999999
Q ss_pred EEEEeCCC-----CCcccHHHHHHHHH--HcCCCeEEEEecccCCC
Q 004615 148 ICLFDSVA-----GVEPQSETVWRQAD--KYGVPRICFVNKMDRLG 186 (742)
Q Consensus 148 ilVVDa~~-----Gv~~qT~~v~~~a~--~~~ip~il~INK~Dr~~ 186 (742)
++|-+..+ +++.-=.-++|+.- -.++|+|+|-||.|...
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 99986654 22211122233332 25699999999999864
No 474
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=88.87 E-value=1.4 Score=49.15 Aligned_cols=87 Identities=14% Similarity=-0.026 Sum_probs=55.7
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCC-Cc--ccHHHHH----HHHHHc--CCCeEEEEecccCCCCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VE--PQSETVW----RQADKY--GVPRICFVNKMDRLGAN 188 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~G-v~--~qT~~v~----~~a~~~--~ip~il~INK~Dr~~~~ 188 (742)
++|-+.|||||+...+ -+..||..+|.+|+.+.+..- +. .|....+ ...... +...-+++|++|.-...
T Consensus 233 ~~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~ 310 (387)
T PHA02519 233 DNYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVGN 310 (387)
T ss_pred ccCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCCch
Confidence 4689999999998765 588899999999988865421 11 1221222 222221 22223789999965333
Q ss_pred h-HHHHHHHHHHhCCcceE
Q 004615 189 F-FRTRDMIVTNLGAKPLV 206 (742)
Q Consensus 189 ~-~~~~~~i~~~l~~~~~~ 206 (742)
. ..+.+.+++.+|.....
T Consensus 311 ~~~~i~~~l~~~~g~~vl~ 329 (387)
T PHA02519 311 QSRWMEEQIRNTWGSMVLR 329 (387)
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 3 44778999999876443
No 475
>PRK12289 GTPase RsgA; Reviewed
Probab=88.72 E-value=0.25 Score=54.08 Aligned_cols=62 Identities=16% Similarity=0.048 Sum_probs=37.1
Q ss_pred EEEEEeecccCcccccceeccCC-ccCCCcHh--HHhhcceEecceEEEEecCeEEEEEcCCCccCcH
Q 004615 70 QFSVFAMAAEGRNYKIGEVHEGT-ATMDWMEQ--EQERGITITSAATTTYWNKHRINIIDTPGHVDFT 134 (742)
Q Consensus 70 ni~iiGh~~~Gk~~~~g~v~~g~-~~~D~~~~--E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF~ 134 (742)
.++++|.++.||||+++.+-... ..+..... .+-|.+|..+....+. ++ ..||||||...|.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-NG--GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-CC--cEEEeCCCccccc
Confidence 48999999999999888775432 11111111 2333355555333332 22 3799999987653
No 476
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=88.22 E-value=1.6 Score=48.59 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=54.4
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCC-CCc--ccHHHHHHHHHH------cCCCeEEEEecccCCCCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA-GVE--PQSETVWRQADK------YGVPRICFVNKMDRLGAN 188 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~-Gv~--~qT~~v~~~a~~------~~ip~il~INK~Dr~~~~ 188 (742)
++|-+.|||||... ..-+..+|..+|.+|+.+.+.. .+. .+....++...+ .+...-+++|+.|.-...
T Consensus 233 ~~YD~IiIDtpP~l--~~~t~nal~AaD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~ 310 (388)
T PRK13705 233 HDYDVIVIDSAPNL--GIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGS 310 (388)
T ss_pred ccCCEEEEECCCch--hHHHHHHHHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCch
Confidence 45889999999874 4568889999999999987642 111 122222232222 122223789999965433
Q ss_pred hHH-HHHHHHHHhCCcce
Q 004615 189 FFR-TRDMIVTNLGAKPL 205 (742)
Q Consensus 189 ~~~-~~~~i~~~l~~~~~ 205 (742)
..+ +.+.+++.++....
T Consensus 311 ~~~~~~~~l~~~~~~~vl 328 (388)
T PRK13705 311 QSPWMEEQIRDAWGSMVL 328 (388)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 334 66888888876543
No 477
>PRK10037 cell division protein; Provisional
Probab=88.14 E-value=1.8 Score=44.95 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=42.4
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHc-CCCeEEEEeccc
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKMD 183 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~-~ip~il~INK~D 183 (742)
++|.+.|||||+..+ ..+..++..+|.+|+++.... ...++...+. +....+++|+.+
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~~------~~~i~~~~~~~~~~~~i~~n~~~ 174 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVDA------NCHIRLHQQALPAGAHILINDLR 174 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcCH------HHHHhhhccccCCCeEEEEecCC
Confidence 578999999999865 468899999999999998642 2234444433 334457789886
No 478
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=1.8 Score=54.11 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=67.8
Q ss_pred ccEEEEEeecccCcccccceeccCCccCCCcHhHHhhcceEecc-eEEEEe-cCeEEEEEcCCCc------cCcHHH--H
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHEGTATMDWMEQEQERGITITSA-ATTTYW-NKHRINIIDTPGH------VDFTLE--V 137 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~~~E~erGITi~s~-~~~~~~-~~~~inlIDTPGh------~DF~~e--v 137 (742)
.+=..|||.+.+||||.+-+ .| .++--.|+.+-...... .-+|.| -...-.||||.|- .++... .
T Consensus 125 LPWy~viG~pgsGKTtal~~--sg---l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 125 LPWYMVIGPPGSGKTTALLN--SG---LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CCceEEecCCCCCcchHHhc--cc---ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHH
Confidence 45688999999999996633 22 23333333333333222 245555 3456789999992 223222 1
Q ss_pred ---------HHHHHhhceEEEEEeCCCCCc--ccHH-HHHH----------HHHHcCCCeEEEEecccCCC
Q 004615 138 ---------ERALRVLDGAICLFDSVAGVE--PQSE-TVWR----------QADKYGVPRICFVNKMDRLG 186 (742)
Q Consensus 138 ---------~~al~~~DgailVVDa~~Gv~--~qT~-~v~~----------~a~~~~ip~il~INK~Dr~~ 186 (742)
.|..+-.||+|+.+|..+=.+ .+.+ .+.+ +.....+|+.+++||+|...
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 233445799999999875322 2222 2222 22335789999999999874
No 479
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=87.38 E-value=1.2 Score=46.75 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=49.4
Q ss_pred cCeEEEEEcCCCccCcHHH-HHHHHHhhceEEEEEeCCCCCcccHHHHHHHH----HHcCCCeEEEEecccCCCCChHHH
Q 004615 118 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQA----DKYGVPRICFVNKMDRLGANFFRT 192 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~e-v~~al~~~DgailVVDa~~Gv~~qT~~v~~~a----~~~~ip~il~INK~Dr~~~~~~~~ 192 (742)
++|.+.||||||+..-.+- ...++..+|.+|+++.+..---.....+++.. ...+++...+|+.+-+ ...-...
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~-~~~~~~~ 193 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN-TDREDEL 193 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC-ChhHHHH
Confidence 5789999999997532111 11234479999999987531111112222222 2346676544433322 2223456
Q ss_pred HHHHHHHhCCcceEEEec
Q 004615 193 RDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 193 ~~~i~~~l~~~~~~~~~P 210 (742)
++++.+.++.... -.+|
T Consensus 194 ~~~l~~~~g~~vl-~~Ip 210 (270)
T cd02040 194 IDAFAKRLGTQMI-HFVP 210 (270)
T ss_pred HHHHHHHcCCCeE-eecC
Confidence 7788888876533 2455
No 480
>PRK00098 GTPase RsgA; Reviewed
Probab=87.17 E-value=0.31 Score=52.31 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=34.4
Q ss_pred cEEEEEeecccCcccccceeccCCccCCC--cHh--HHhhcceEecceEEEEecCeEEEEEcCCCccCc
Q 004615 69 RQFSVFAMAAEGRNYKIGEVHEGTATMDW--MEQ--EQERGITITSAATTTYWNKHRINIIDTPGHVDF 133 (742)
Q Consensus 69 ~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~--~~~--E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF 133 (742)
+.++++|++++||||++..+.... ..+. ... .+-|.+|.......+ . ....||||||...|
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~--~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDL--P-GGGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEc--C-CCcEEEECCCcCcc
Confidence 579999999999999877664321 1111 111 111224433322222 2 23489999998754
No 481
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=86.81 E-value=4.2 Score=41.47 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=43.1
Q ss_pred CeEEEEEcCCCccCc------HHHHHHHHHhhceEEEEEeCCCCC-ccc-H------HHHHHHHHHcCCCeEEEEecccC
Q 004615 119 KHRINIIDTPGHVDF------TLEVERALRVLDGAICLFDSVAGV-EPQ-S------ETVWRQADKYGVPRICFVNKMDR 184 (742)
Q Consensus 119 ~~~inlIDTPGh~DF------~~ev~~al~~~DgailVVDa~~Gv-~~q-T------~~v~~~a~~~~ip~il~INK~Dr 184 (742)
...+.|+||||.+.| ...+.+-|+..|.-+++|.-.+-. +.. . ..-+.-.....+|.+=++.|+|.
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 467889999997765 456777777777655555433321 111 1 11123344567899999999997
Q ss_pred CC
Q 004615 185 LG 186 (742)
Q Consensus 185 ~~ 186 (742)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 53
No 482
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.38 E-value=1.4 Score=52.75 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=61.5
Q ss_pred ccEEEEEeecccCcccccceec------cCC-----ccCCCc---HhHHh------hcceEecceEE--E-----EecCe
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVH------EGT-----ATMDWM---EQEQE------RGITITSAATT--T-----YWNKH 120 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~------~g~-----~~~D~~---~~E~e------rGITi~s~~~~--~-----~~~~~ 120 (742)
.+.|+++|..-+||||.+..+. .|. ...|.. ..|+- -|+.+...... + ...++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 3689999999999998544432 231 123322 12321 23333211100 0 11467
Q ss_pred EEEEEcCCCccCcHHHHHHHHHh------hceEEEEEeCCCCCcccHHHHHHHHHHcC----CCe-EEEEecccCC
Q 004615 121 RINIIDTPGHVDFTLEVERALRV------LDGAICLFDSVAGVEPQSETVWRQADKYG----VPR-ICFVNKMDRL 185 (742)
Q Consensus 121 ~inlIDTPGh~DF~~ev~~al~~------~DgailVVDa~~Gv~~qT~~v~~~a~~~~----ip~-il~INK~Dr~ 185 (742)
.+.||||||..-...++...+.. .+-.+||+|++. |.+.+-+.+..++ +++ =++++|+|-.
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~----~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS----HGDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC----cHHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 89999999944333334333332 246799999985 3333333333332 233 4779999954
No 483
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=85.79 E-value=2.7 Score=47.40 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=56.1
Q ss_pred hcceEecceEEEEecC---eEEEEEcCCCccC-----c---HHHH-----HHHHHhhceEEEEEe-CC-CCCcccHHHHH
Q 004615 104 RGITITSAATTTYWNK---HRINIIDTPGHVD-----F---TLEV-----ERALRVLDGAICLFD-SV-AGVEPQSETVW 165 (742)
Q Consensus 104 rGITi~s~~~~~~~~~---~~inlIDTPGh~D-----F---~~ev-----~~al~~~DgailVVD-a~-~Gv~~qT~~v~ 165 (742)
-|-|+....+++..++ -+..|+|.||.+. . +.+. -..+..-.++||+|- +. +.-...-..+.
T Consensus 393 ~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLV 472 (980)
T KOG0447|consen 393 EGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLV 472 (980)
T ss_pred CCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHH
Confidence 3889999999999876 6889999999642 2 1222 233344567777663 21 11112223456
Q ss_pred HHHHHcCCCeEEEEecccCCCC
Q 004615 166 RQADKYGVPRICFVNKMDRLGA 187 (742)
Q Consensus 166 ~~a~~~~ip~il~INK~Dr~~~ 187 (742)
-++.-.|...|+|++|+|....
T Consensus 473 sq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 473 SQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred HhcCCCCCeeEEEEeecchhhh
Confidence 7788899999999999998753
No 484
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=85.70 E-value=1.6 Score=38.49 Aligned_cols=45 Identities=22% Similarity=0.115 Sum_probs=33.0
Q ss_pred eEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHH
Q 004615 120 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR 166 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~ 166 (742)
+.+.+||||+..+ .....++..+|.+++++++...-...+..+++
T Consensus 40 ~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 7799999999764 34558999999999999986543333444443
No 485
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=85.64 E-value=2.8 Score=43.74 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=57.2
Q ss_pred cCeEEEEEcCCC--ccC-cH--HHHH----HHHH--hhceEEEEEeCCCCCcccHHHHHHHHHHcCCCe-EEEEecccCC
Q 004615 118 NKHRINIIDTPG--HVD-FT--LEVE----RALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 185 (742)
Q Consensus 118 ~~~~inlIDTPG--h~D-F~--~ev~----~al~--~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~-il~INK~Dr~ 185 (742)
..|.+.++|||. |.- +. .++. ..+. ..+++++|+....-...++++.+..+.+.|+|+ -+++||+.-.
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 468899999986 311 10 1111 1121 135889999887766778899999999999998 4899998764
Q ss_pred CC---C--------hHHHHHHHHHHhCCc
Q 004615 186 GA---N--------FFRTRDMIVTNLGAK 203 (742)
Q Consensus 186 ~~---~--------~~~~~~~i~~~l~~~ 203 (742)
.. + ..+.++++.+.|+..
T Consensus 203 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~~ 231 (254)
T cd00550 203 DVTNCPFLEARREIQQKYLEEIEELFSDL 231 (254)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 32 1 234577777776543
No 486
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=85.62 E-value=3.5 Score=45.12 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=72.3
Q ss_pred CccEEEEEeecccCcccccceec---cC-----------CccCCCcHhHH--------hhcceEecceEEEEe-------
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVH---EG-----------TATMDWMEQEQ--------ERGITITSAATTTYW------- 117 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~---~g-----------~~~~D~~~~E~--------erGITi~s~~~~~~~------- 117 (742)
+++...+.|--.+||||.+.++- .| ..-.|..-.+. +.=+.+...++.|..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 46778888988999998666542 12 12122211111 011233333333332
Q ss_pred --------cCeEEEEEcCCCccCcHHHHHHHHH--------hhceEEEEEeCCCCCccc--------------------H
Q 004615 118 --------NKHRINIIDTPGHVDFTLEVERALR--------VLDGAICLFDSVAGVEPQ--------------------S 161 (742)
Q Consensus 118 --------~~~~inlIDTPGh~DF~~ev~~al~--------~~DgailVVDa~~Gv~~q--------------------T 161 (742)
......+|-|.|-.|.. .+...+. ..|++|.||||......+ .
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P~-~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALPK-PLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHE 161 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCHH-HHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccccc
Confidence 13467899999998865 3334331 468999999998653211 0
Q ss_pred ----HHHHHHHHHcCCCeEEEEecccCCCCC-hHHHHHHHHHH
Q 004615 162 ----ETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTN 199 (742)
Q Consensus 162 ----~~v~~~a~~~~ip~il~INK~Dr~~~~-~~~~~~~i~~~ 199 (742)
....+|+... =++++||+|+...+ ++++.+.+++.
T Consensus 162 ~~~~~~~~~Qi~~A---D~IvlnK~Dl~~~~~l~~~~~~l~~~ 201 (341)
T TIGR02475 162 TPLEELFEDQLACA---DLVILNKADLLDAAGLARVRAEIAAE 201 (341)
T ss_pred chHHHHHHHHHHhC---CEEEEeccccCCHHHHHHHHHHHHHh
Confidence 1223444333 48999999988643 44444455443
No 487
>KOG2484 consensus GTPase [General function prediction only]
Probab=85.37 E-value=2.6 Score=46.07 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=54.2
Q ss_pred EEEEEcCCCcc-CcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHH-HcC-CCeEEEEecccCCCCC-hHHHHHHH
Q 004615 121 RINIIDTPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD-KYG-VPRICFVNKMDRLGAN-FFRTRDMI 196 (742)
Q Consensus 121 ~inlIDTPGh~-DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~-~~~-ip~il~INK~Dr~~~~-~~~~~~~i 196 (742)
..+-.|-++|. -|..|...-+..+|.+|-|+||.+-.......+=++.. ..| ...|+++||+|...-+ .+.-+..+
T Consensus 123 ~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YL 202 (435)
T KOG2484|consen 123 YENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYL 202 (435)
T ss_pred hhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHH
Confidence 34566666665 36788899999999999999999876555444444443 334 7789999999997533 34444444
Q ss_pred HHH
Q 004615 197 VTN 199 (742)
Q Consensus 197 ~~~ 199 (742)
+..
T Consensus 203 r~~ 205 (435)
T KOG2484|consen 203 RRE 205 (435)
T ss_pred Hhh
Confidence 443
No 488
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.32 E-value=2.9 Score=46.87 Aligned_cols=115 Identities=16% Similarity=0.251 Sum_probs=62.6
Q ss_pred CccEEEEEeecccCcccccceecc------C-C----ccCCCcH---hH------HhhcceEecceEEE-------EecC
Q 004615 67 SRRQFSVFAMAAEGRNYKIGEVHE------G-T----ATMDWME---QE------QERGITITSAATTT-------YWNK 119 (742)
Q Consensus 67 ~~~ni~iiGh~~~Gk~~~~g~v~~------g-~----~~~D~~~---~E------~erGITi~s~~~~~-------~~~~ 119 (742)
.-..|+++|..-+||||.+..+.. | . ...|... .| +..|+......... ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 347899999999999996542211 1 1 1222211 11 12244443222211 1257
Q ss_pred eEEEEEcCCCccCcHHHHHHHHHhh------ceEEEEEeCCCCCcccHHHHHHHHHHc-CCCe-EEEEecccCC
Q 004615 120 HRINIIDTPGHVDFTLEVERALRVL------DGAICLFDSVAGVEPQSETVWRQADKY-GVPR-ICFVNKMDRL 185 (742)
Q Consensus 120 ~~inlIDTPGh~DF~~ev~~al~~~------DgailVVDa~~Gv~~qT~~v~~~a~~~-~ip~-il~INK~Dr~ 185 (742)
+.+.||||+|..-...+...-+... +-.+||+||+.+- ++ +-..+..+ .++. =++++|+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~--~~~~~~~f~~~~~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DT--LDEVISAYQGHGIHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HH--HHHHHHHhcCCCCCEEEEEeeeCC
Confidence 8899999999765544443333322 3568999998542 22 22222332 2444 3789999964
No 489
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=85.11 E-value=2.2 Score=41.18 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=43.0
Q ss_pred cCeEEEEEcCCCccC-------cHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEe
Q 004615 118 NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVN 180 (742)
Q Consensus 118 ~~~~inlIDTPGh~D-------F~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~IN 180 (742)
+++.+.+||+||+.. ...++.+ ...+.+|+|++...|--..+....+++++.+++++ +++|
T Consensus 98 ~~~D~viid~~g~~~~~~~~~~~~~dl~~--~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVPITEEYTTADLIK--LLQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred hcCCEEEEEcCCccccCCCCCCcHHHHHH--HhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 567899999998632 2233333 34677899998877766667777788888899986 5555
No 490
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.99 E-value=1.9 Score=46.21 Aligned_cols=111 Identities=21% Similarity=0.334 Sum_probs=69.2
Q ss_pred ccEEEEEeecccCcccccceecc-----CCcc----CCCcH---hHH------hhcceEecce-----EEEEe-------
Q 004615 68 RRQFSVFAMAAEGRNYKIGEVHE-----GTAT----MDWME---QEQ------ERGITITSAA-----TTTYW------- 117 (742)
Q Consensus 68 ~~ni~iiGh~~~Gk~~~~g~v~~-----g~~~----~D~~~---~E~------erGITi~s~~-----~~~~~------- 117 (742)
.-.|.++|=--+||||-+|.+.. |..+ .|+.. .|| .-|+.+-+.. .++-|
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak 218 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK 218 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence 45678899999999998887743 4322 23322 122 1244443321 00111
Q ss_pred -cCeEEEEEcCCCc----cCcHHHHHHHHHhh---ce-----EEEEEeCCCCCcccHHHHHHHHHHcC--CCe-EEEEec
Q 004615 118 -NKHRINIIDTPGH----VDFTLEVERALRVL---DG-----AICLFDSVAGVEPQSETVWRQADKYG--VPR-ICFVNK 181 (742)
Q Consensus 118 -~~~~inlIDTPGh----~DF~~ev~~al~~~---Dg-----ailVVDa~~Gv~~qT~~v~~~a~~~~--ip~-il~INK 181 (742)
+++-+.||||.|- .+...|...--|++ +. .++|+||+-|- .-+.||+.++ +++ =++++|
T Consensus 219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq-----nal~QAk~F~eav~l~GiIlTK 293 (340)
T COG0552 219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ-----NALSQAKIFNEAVGLDGIILTK 293 (340)
T ss_pred HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh-----hHHHHHHHHHHhcCCceEEEEe
Confidence 4789999999993 45777877777775 33 77888998762 2355565543 444 478999
Q ss_pred cc
Q 004615 182 MD 183 (742)
Q Consensus 182 ~D 183 (742)
+|
T Consensus 294 lD 295 (340)
T COG0552 294 LD 295 (340)
T ss_pred cc
Confidence 99
No 491
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=84.51 E-value=0.75 Score=51.30 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=58.0
Q ss_pred hcceEecceEEEEe-cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCC-----------cccHHHHHHHHHH-
Q 004615 104 RGITITSAATTTYW-NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK- 170 (742)
Q Consensus 104 rGITi~s~~~~~~~-~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv-----------~~qT~~v~~~a~~- 170 (742)
|.-|....-..|.+ ++..+.++|..|...-...+...+..++++|+||+-.+=- ...+..+|+....
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 45566666778888 9999999999999766666777778899999999965321 1223555655443
Q ss_pred ---cCCCeEEEEecccCC
Q 004615 171 ---YGVPRICFVNKMDRL 185 (742)
Q Consensus 171 ---~~ip~il~INK~Dr~ 185 (742)
.+.|+|||+||+|..
T Consensus 299 ~~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLF 316 (389)
T ss_dssp GGGTTSEEEEEEE-HHHH
T ss_pred cccccCceEEeeecHHHH
Confidence 468999999999964
No 492
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.43 E-value=2.6 Score=44.47 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=39.6
Q ss_pred CeEEEEEcCCCccCcHHH----HHHHHHh--hceEEEEEeCCCCCcccHHHHHHHHHHcC-CCe-EEEEecccCCC
Q 004615 119 KHRINIIDTPGHVDFTLE----VERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYG-VPR-ICFVNKMDRLG 186 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~e----v~~al~~--~DgailVVDa~~Gv~~qT~~v~~~a~~~~-ip~-il~INK~Dr~~ 186 (742)
++.+.||||||..-...+ +...++. .|-.+||+||+.+ .....++++.++ +++ =++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~----~~d~~~~~~~f~~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK----SKDMIEIITNFKDIHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC----HHHHHHHHHHhCCCCCCEEEEEeecCCC
Confidence 578999999998754333 3333333 3667999998753 223334444433 333 37899999653
No 493
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=84.24 E-value=5.9 Score=39.78 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=50.0
Q ss_pred eEEEEEcCCCcc------CcHHHHHHHHHhhc---eEEEEEeCCCCCc-----ccHHHHHHHHHHcCCCeEEEEecccCC
Q 004615 120 HRINIIDTPGHV------DFTLEVERALRVLD---GAICLFDSVAGVE-----PQSETVWRQADKYGVPRICFVNKMDRL 185 (742)
Q Consensus 120 ~~inlIDTPGh~------DF~~ev~~al~~~D---gailVVDa~~Gv~-----~qT~~v~~~a~~~~ip~il~INK~Dr~ 185 (742)
-.+.++||||.+ .-.....+.|.+-+ +++.++|+.-=+. +.-...+-......+|.|=++.|||+.
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 457799999954 45677788887755 6777777643211 112223344456789999999999987
Q ss_pred CCChHHHHHHHHHHh
Q 004615 186 GANFFRTRDMIVTNL 200 (742)
Q Consensus 186 ~~~~~~~~~~i~~~l 200 (742)
.. +..+++...|
T Consensus 178 k~---~~k~~l~~Fl 189 (273)
T KOG1534|consen 178 KD---KNKKELERFL 189 (273)
T ss_pred hh---hhHHHHHHhc
Confidence 53 3334444444
No 494
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=83.98 E-value=2.6 Score=42.43 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=41.3
Q ss_pred EEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEe
Q 004615 121 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVN 180 (742)
Q Consensus 121 ~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~IN 180 (742)
.+.|||||.-.+. .....-++.+|.+|+|+....--..+....++.++ +.+.+ +++|
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 6999999987653 34444567899999999987655566677777766 56666 5665
No 495
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.65 E-value=4.2 Score=43.58 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=66.4
Q ss_pred CCCccEEEEEeecccCcccccceeccCCccCCCc----------HhHHhhcceEecceEEEEecCeEEEEEcCCCccCc-
Q 004615 65 PRSRRQFSVFAMAAEGRNYKIGEVHEGTATMDWM----------EQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 133 (742)
Q Consensus 65 ~~~~~ni~iiGh~~~Gk~~~~g~v~~g~~~~D~~----------~~E~erGITi~s~~~~~~~~~~~inlIDTPGh~DF- 133 (742)
..+.-.|+++|..-+||++++.-+...+.--|++ ..|+-+.-|++ +-+......|.++||--..-|
T Consensus 185 ~tdf~VIgvlG~QgsGKStllslLaans~~~dyr~yvFRpvS~Ea~E~~~~qt~~---Id~~i~q~~i~fldtqpl~sfs 261 (491)
T KOG4181|consen 185 TTDFTVIGVLGGQGSGKSTLLSLLAANSLDYDYRQYVFRPVSPEADECIFAQTHK---IDPNIGQKSILFLDTQPLQSFS 261 (491)
T ss_pred CCCeeEEEeecCCCccHHHHHHHHhccChHHhhHHHhcccCChhhhhhhccceec---cccccccceEEeeccccccchH
Confidence 3455678999999999999876665543222221 23444434432 233334445666665332111
Q ss_pred ---------------------------HHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHc---------------
Q 004615 134 ---------------------------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--------------- 171 (742)
Q Consensus 134 ---------------------------~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~--------------- 171 (742)
.+.+.--|.+|..+|+|+|.-.- .|-...++.|...
T Consensus 262 i~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~d--~~lir~L~~Ae~~rP~laifrh~~~~~r 339 (491)
T KOG4181|consen 262 IRERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLAD--EQLIRLLNAAERLRPTLAIFRHCKGYVR 339 (491)
T ss_pred HHhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchhH--HHHHHHHHHHHhhCcccCcccccccccc
Confidence 12334456789999999997542 2333344444332
Q ss_pred -CCCeEEEE-ecccCCCCCh
Q 004615 172 -GVPRICFV-NKMDRLGANF 189 (742)
Q Consensus 172 -~ip~il~I-NK~Dr~~~~~ 189 (742)
..|.++|| ||.-|.....
T Consensus 340 ~~~p~lVFv~~KA~riDf~p 359 (491)
T KOG4181|consen 340 DHMPQLVFVRAKAHRIDFEP 359 (491)
T ss_pred ccCcceEEEeccccccccCh
Confidence 25666665 8877665443
No 496
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.59 E-value=2 Score=52.26 Aligned_cols=67 Identities=10% Similarity=-0.030 Sum_probs=50.3
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 185 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~ 185 (742)
+.|.+.+||||...... .+..-+..+|++|+|+....-...+....++.+...+.+++ +|+|++|..
T Consensus 654 ~~yD~IiID~pp~~~~~-d~~~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVR-DMRAAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDPN 721 (754)
T ss_pred hhCCEEEEcCCCcchhH-HHHHhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCChh
Confidence 35889999999986532 33334557999999998654445567778888888888875 899999854
No 497
>COG1161 Predicted GTPases [General function prediction only]
Probab=83.19 E-value=2.1 Score=46.47 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=54.8
Q ss_pred EEcCCCcc-CcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeEEEEecccCCCCChHHHHHHHHHHh
Q 004615 124 IIDTPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNL 200 (742)
Q Consensus 124 lIDTPGh~-DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~il~INK~Dr~~~~~~~~~~~i~~~l 200 (742)
+-+-|||. ++..++..-+..+|.++-|+||..-...+...+-+.+.. .|.++++||.|+..... .++..+.+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~--k~~i~vlNK~DL~~~~~---~~~W~~~~ 86 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE--KPKLLVLNKADLAPKEV---TKKWKKYF 86 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc--CCcEEEEehhhcCCHHH---HHHHHHHH
Confidence 44569996 578889999999999999999998777777777666555 45599999999886443 44444444
No 498
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=82.91 E-value=2.7 Score=43.75 Aligned_cols=83 Identities=16% Similarity=-0.015 Sum_probs=55.1
Q ss_pred ecCeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCc---ccHHHHHHHHHHcC-C--C-eEEEEecccCCCCCh
Q 004615 117 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE---PQSETVWRQADKYG-V--P-RICFVNKMDRLGANF 189 (742)
Q Consensus 117 ~~~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~---~qT~~v~~~a~~~~-i--p-~il~INK~Dr~~~~~ 189 (742)
+++|-+.|||||++. ...+..++..+|.+++-+-+..--- .+....+....+.+ . + ..+++|+.|......
T Consensus 117 ~~~yD~iiID~pp~l--~~l~~nal~asd~vlIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (259)
T COG1192 117 KDDYDYIIIDTPPSL--GVLTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLA 194 (259)
T ss_pred ccCCCEEEECCCCch--hHHHHHHHHHcCeeEEecCchHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcchH
Confidence 467999999999997 4568899999996665554432111 11222222233322 1 3 347889999887778
Q ss_pred HHHHHHHHHHhC
Q 004615 190 FRTRDMIVTNLG 201 (742)
Q Consensus 190 ~~~~~~i~~~l~ 201 (742)
...++.+++.++
T Consensus 195 ~~~~~~~~~~~~ 206 (259)
T COG1192 195 DEVLQELKQLLG 206 (259)
T ss_pred HHHHHHHHHHhc
Confidence 888888888877
No 499
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=82.68 E-value=1.8 Score=45.56 Aligned_cols=85 Identities=12% Similarity=0.116 Sum_probs=51.9
Q ss_pred cCeEEEEEcCCCccCcHHHHHHHHH------hhceEEEEEeCCC----CCcccHHHHHHHHHHcCCCeE-EEEecccCCC
Q 004615 118 NKHRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVA----GVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 186 (742)
Q Consensus 118 ~~~~inlIDTPGh~DF~~ev~~al~------~~DgailVVDa~~----Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~~ 186 (742)
++|-+.||||+|.. +..++. .+|.+|+++.... |+..-.+.+.+.....+++.+ +++|+.. .
T Consensus 117 ~~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~--~ 189 (275)
T PRK13233 117 DDLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRN--V 189 (275)
T ss_pred CCCCEEEEecCCce-----eeccccccchhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC--C
Confidence 56889999998843 223433 7999999998752 221112222344445677775 8889643 1
Q ss_pred CChHHHHHHHHHHhCCcceEEEec
Q 004615 187 ANFFRTRDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 187 ~~~~~~~~~i~~~l~~~~~~~~~P 210 (742)
..-..+++++.+.++..... .+|
T Consensus 190 ~~~~~~~e~l~~~~~~~~l~-~Ip 212 (275)
T PRK13233 190 DGELELLEEFTDAIGTQMIH-FVP 212 (275)
T ss_pred CcHHHHHHHHHHHcCCceee-ecC
Confidence 12245788888888765432 455
No 500
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=82.35 E-value=3 Score=50.46 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=50.2
Q ss_pred CeEEEEEcCCCccCcHHHHHHHHHhhceEEEEEeCCCCCcccHHHHHHHHHHcCCCeE-EEEecccCC
Q 004615 119 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 185 (742)
Q Consensus 119 ~~~inlIDTPGh~DF~~ev~~al~~~DgailVVDa~~Gv~~qT~~v~~~a~~~~ip~i-l~INK~Dr~ 185 (742)
.|.+.|||||....... .....+.+|++|+|+....--..+....++.+.+.+.+++ +|+|++|.-
T Consensus 640 ~yD~IIIDtPP~~~~~D-a~~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~~ 706 (726)
T PRK09841 640 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 706 (726)
T ss_pred cCCEEEEeCCCccccch-HHHHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCcccC
Confidence 58899999998765543 3344578999999987655444566777788888899987 899999853
Done!