Query 004615
Match_columns 742
No_of_seqs 287 out of 2581
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 17:48:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004615.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1915-1918//hhsearch_pdb/004615hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 1.0 1 1 1215.2 67.6 672 66-738 11-709 (709)
2 2rdo_7 EF-G, elongation factor 1.0 1 1 1144.3 77.0 673 66-739 8-704 (704)
3 2xex_A Elongation factor G; GT 1.0 1 1 1120.6 72.8 670 66-738 8-691 (693)
4 1dar_A EF-G, elongation factor 1.0 1 1 1119.1 64.1 667 66-736 10-690 (691)
5 3j25_A Tetracycline resistance 1.0 1 1 1101.1 17.7 604 67-730 1-617 (638)
6 2dy1_A Elongation factor G; tr 1.0 1 1 1041.3 71.6 643 66-740 7-664 (665)
7 1n0u_A EF-2, elongation factor 1.0 1 1 1002.0 47.4 657 66-741 17-826 (842)
8 3vqt_A RF-3, peptide chain rel 1.0 1 1 793.5 31.1 470 66-559 29-524 (548)
9 2ywe_A GTP-binding protein LEP 1.0 1 1 678.5 43.9 453 66-725 4-483 (600)
10 3cb4_D GTP-binding protein LEP 1.0 1 1 663.4 45.8 450 66-725 2-478 (599)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=1215.20 Aligned_cols=672 Identities=57% Similarity=0.944 Sum_probs=645.9
Q ss_pred CCCCEEEEEEECCCCCCC-------------CCCEECCCCCCCCCCHHHHHHCCEEECCEEEEEEC-------CEEEEEE
Q ss_conf 971179999322348654-------------35300059855799076776241475236999966-------8479998
Q 004615 66 RSRRQFSVFAMAAEGRNY-------------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------KHRINII 125 (742)
Q Consensus 66 ~~~~~i~iiG~~~~Gk~t-------------~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~-------~~~inlI 125 (742)
+++|||+|+||++||||| +.|+|++|+++||++++||+|||||+++.+++.|+ +|+||||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHCCCEEEEEEEEEEECCCCCCCCCEEEEEE
T ss_conf 87729999948999989999999996299875760438975679849999749729760389996167677887799999
Q ss_pred CCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 19995583999999998605699999488987510799999999729985999925358898767789999987199535
Q 004615 126 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPL 205 (742)
Q Consensus 126 DTPGH~DF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~ip~ii~INKiDr~~~~~~~~~~~i~~~l~~~~~ 205 (742)
|||||+||++||+++|+++||||+||||++||++||+++|++|.++++|+++|||||||.++++..++++++.+|+..++
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPV 170 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCEE
T ss_pred ECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 39897640899999998748589999799897563899999999759986999716666676689998776220456225
Q ss_pred EEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHH
Q ss_conf 78821678886104564235457874377789414750573668999999999999999705999999886399999989
Q 004615 206 VVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEET 285 (742)
Q Consensus 206 ~~~~P~~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~dd~lle~~l~~~~~~~~~ 285 (742)
++++|++.+..|.|++|++.+++++|.....|+.+...+++.++.+....+|..++|.+++.||+++++|+++..++..+
T Consensus 171 ~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~ 250 (709)
T 4fn5_A 171 PVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAE 250 (709)
T ss_dssp ESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHH
T ss_pred EEECCCCCHHCCCEEEEEEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHH
T ss_conf 55435573001553898751067884044578631013463788888999988789887744499999987447762777
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 99999850003842345542546898849999999983999999878889999994111013469999839999998754
Q 004615 286 IKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 365 (742)
Q Consensus 286 l~~~l~~~~~~~~~~Pv~~~Sa~~~~gi~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 365 (742)
+...+++....+.++|++++||+++.|++.|||+|++++|+|.+++..++...++......+.|++++|++++|||+.++
T Consensus 251 ~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d 330 (709)
T 4fn5_A 251 IKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATD 330 (709)
T ss_dssp HHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCB
T ss_pred HHHHHHHHHHHCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 77788886540024550440044677668888878860799754443013377654322223578667615799995035
Q ss_pred CCCCEEEEEEEEEEEECCCCEEEECCCCCEEECCEEEEEECCCEEECCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCC
Q ss_conf 99862899999801765899799478984576241798303841111611389999981789654486340599865445
Q 004615 366 PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLE 445 (742)
Q Consensus 366 ~~~G~i~~~RV~sG~l~~g~~i~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~ 445 (742)
++.|+++|+|||||+|++|++|++...++.+++++++.++|+++++++++.|||||+|.|++++.+|||||+.+.+..++
T Consensus 331 ~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~~~~~~ 410 (709)
T 4fn5_A 331 PFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPIILE 410 (709)
T ss_dssp TTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSSCCBCC
T ss_pred CCCCCEEEEECCCCCCCCCCEEEEECCCCEEEECCEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCEECCCCCCCCCC
T ss_conf 67770577732589888899999723995775034067630101482066378701463887676388756887654578
Q ss_pred CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEECCE
Q ss_conf 56789951899998299757989999999987229920799828878089994285479999999985518189980763
Q 004615 446 RMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQ 525 (742)
Q Consensus 446 ~~~~~~Pv~~~~Iep~~~~d~~kL~~~L~~l~~eDPsl~v~~~~etge~ii~G~GeLHLev~~~rL~~~~~iev~~~~p~ 525 (742)
++.+|+|+++++|+|.+++|.+||.++|++|+++||++++..+++|||++|+|+|||||||+++||+++|++++.+++|+
T Consensus 411 ~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~vs~P~ 490 (709)
T 4fn5_A 411 RMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANIGKPQ 490 (709)
T ss_dssp ----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCCBCCC
T ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHCCEEEEEECE
T ss_conf 77899960489996188788656678877888769828999923789679999889999999999988709607995035
Q ss_pred EEEEEEEECC-CEEEEEEEECCCCCCCCEEEEEEEEECC------CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3698532023-1024798520598865159999994325------89984688322478777443899999999999759
Q 004615 526 VNYRESISKV-SEVKYVHKKQSGGQGQFADITVRFEPME------AGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNG 598 (742)
Q Consensus 526 V~yrEti~~~-~~~~~~~~k~~~~~~~~~~v~~~~~P~~------~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~G 598 (742)
|+|||||++. .+.+++|+||+++++||+.+++.++|.+ .+.++.|.+++.++.+|++|+++|++||+|++++|
T Consensus 491 V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G 570 (709)
T 4fn5_A 491 VAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNG 570 (709)
T ss_dssp CCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGHHHHHHHHHHHHHHC
T ss_pred EEEEEEEECCCCEECCEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 98999980687100022442157767520589998513320147876760872321366477889999999999999639
Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEECC
Q ss_conf 63599713489999713224789977799999999999999863993630204999980786267899998138921012
Q 004615 599 VLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINS 678 (742)
Q Consensus 599 pl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~veI~~p~~~~g~V~~~L~~Rrg~i~~ 678 (742)
|||||||+||+|+|.|+++|+++|++++|+.|+++||++|+++|+|+||||||.++|+||++++|+|+++|++|||+|.+
T Consensus 571 ~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~ 650 (709)
T 4fn5_A 571 VVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQG 650 (709)
T ss_dssp SSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEE
T ss_pred CCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECHHHHHHHHHHHHHCCCEEEC
T ss_conf 62478546559999976612788874789999999999999877999988518999998989999999999866988846
Q ss_pred CCCCCCCEEEEEEEECHHHHHCHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 224799869999990135542068984003776189998957501279227999999986
Q 004615 679 FGDKPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 738 (742)
Q Consensus 679 ~~~~~g~~~~i~a~iP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~i~~~~ 738 (742)
+++.+ +..+|+|++|++|||||.++||++|+|+|+|+|+|+||++||+++++++|++.+
T Consensus 651 ~~~~~-~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~~~~i~~~G 709 (709)
T 4fn5_A 651 MEDTV-SGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKKQG 709 (709)
T ss_dssp EEECS-SEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHHHHHHHHTC-
T ss_pred EEECC-CCEEEEEEECHHHHHCHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHCC
T ss_conf 37669-978999996678862988997854888589999988743388078999998529
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=1.00 E-value=1 Score=1144.26 Aligned_cols=673 Identities=57% Similarity=0.936 Sum_probs=638.2
Q ss_pred CCCCEEEEEEECCCCCCCCCCE-------------ECCCCCCCCCCHHHHHHCCEEECCEEEEEECC-------EEEEEE
Q ss_conf 9711799993223486543530-------------00598557990767762414752369999668-------479998
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGE-------------VHEGTATMDWMEQEQERGITITSAATTTYWNK-------HRINII 125 (742)
Q Consensus 66 ~~~~~i~iiG~~~~Gk~t~~g~-------------v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~-------~~inlI 125 (742)
++++||+|+||+++||||+..+ ++.|++++|++++|++|||||+++..++.|++ +.+|||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHCCCEEEECEEEEEECCCCCCCCCEEEEEE
T ss_conf 55648999999999999999999986488553542179944324716677558306504389998785555775059999
Q ss_pred CCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 19995583999999998605699999488987510799999999729985999925358898767789999987199535
Q 004615 126 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPL 205 (742)
Q Consensus 126 DTPGH~DF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~ip~ii~INKiDr~~~~~~~~~~~i~~~l~~~~~ 205 (742)
|||||.||..++.++++.+|++|+|+|+++|++.||+.+|+++...++|+++|+||+|+..+++.+++++++..|+..++
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~~ 167 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPV 167 (704)
T ss_pred ECCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 69796110899999998789899999379887679999999999759997999968886666478899999998589704
Q ss_pred EEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHH
Q ss_conf 78821678886104564235457874377789414750573668999999999999999705999999886399999989
Q 004615 206 VVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEET 285 (742)
Q Consensus 206 ~~~~P~~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~dd~lle~~l~~~~~~~~~ 285 (742)
|+++|++.+..|.|++|++.++++.|+....|..+...+++.++.+...++|..|+|.+++.||++|++||++..++.++
T Consensus 168 ~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~ 247 (704)
T 2rdo_7 168 PLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAE 247 (704)
T ss_pred EEECCCCCCCCCCCEEEHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHH
T ss_conf 68721135666452456233044215676689602771599789999999999999998736999999986679999999
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 99999850003842345542546898849999999983999999878889999994111013469999839999998754
Q 004615 286 IKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 365 (742)
Q Consensus 286 l~~~l~~~~~~~~~~Pv~~~Sa~~~~gi~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 365 (742)
++..+++.+..+.++|++||||++|.|++.|||+|++++|+|.+++..++...+.+.....+.|++++|++++|||++.+
T Consensus 248 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d 327 (704)
T 2rdo_7 248 IKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATD 327 (704)
T ss_pred HHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 99999999973872279974214685699999999987889123144334477654332101468999659999998871
Q ss_pred CCCCEEEEEEEEEEEECCCCEEEECCCCCEEECCEEEEEECCCEEECCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCC
Q ss_conf 99862899999801765899799478984576241798303841111611389999981789654486340599865445
Q 004615 366 PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLE 445 (742)
Q Consensus 366 ~~~G~i~~~RV~sG~l~~g~~i~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~ 445 (742)
++.|+++|+|||||+|++|++|++.+.++.++|++++.++|++++++++|.||||+++.|++++.+|||||+.+.+..++
T Consensus 328 ~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~~~~l~ 407 (704)
T 2rdo_7 328 PFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILE 407 (704)
T ss_pred CCCCEEEEEEEEEEEECCCCEEEECCCCCEEEECEEEEEECCCCEECCEECCCCEEEEECCCCCCCCCEEECCCCCCCCC
T ss_conf 78745899999743564799999578996799663899828984084625899889995865676699984798642357
Q ss_pred CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEECCE
Q ss_conf 56789951899998299757989999999987229920799828878089994285479999999985518189980763
Q 004615 446 RMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQ 525 (742)
Q Consensus 446 ~~~~~~Pv~~~~Iep~~~~d~~kL~~~L~~l~~eDPsl~v~~~~etge~ii~G~GeLHLev~~~rL~~~~~iev~~~~p~ 525 (742)
++.++.|+++++|+|++++|.+||.++|++|++|||+|++.+|++|||++|+|||||||||+++||+++|++++.+++|+
T Consensus 408 ~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~~~p~ 487 (704)
T 2rdo_7 408 RMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQ 487 (704)
T ss_pred CCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEECCE
T ss_conf 77889855999999898677999999999998549879999858899689994778789999999998759628995887
Q ss_pred EEEEEEEECCC-EEEEEEEECCCCCCCCEEEEEEEEEC---CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 36985320231-02479852059886515999999432---589984688322478777443899999999999759635
Q 004615 526 VNYRESISKVS-EVKYVHKKQSGGQGQFADITVRFEPM---EAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLA 601 (742)
Q Consensus 526 V~yrEti~~~~-~~~~~~~k~~~~~~~~~~v~~~~~P~---~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~ 601 (742)
|+|||||.+++ +..++|+||+||++||++++++++|+ ++|+|+.|.+++.|+.+|++|+++|++||+|++++||||
T Consensus 488 V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~ 567 (704)
T 2rdo_7 488 VAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLA 567 (704)
T ss_pred EEEEEEECCCCCCCEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89998406544332456433148998068999999989889999981898703688686999999999999998459967
Q ss_pred CCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEECCCCC
Q ss_conf 99713489999713224789977799999999999999863993630204999980786267899998138921012224
Q 004615 602 GFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGD 681 (742)
Q Consensus 602 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~veI~~p~~~~g~V~~~L~~Rrg~i~~~~~ 681 (742)
||||+||+|+|+|+++|++||++++|+.|+++||++|+++|+|+||||||.++|.||++++|+|+++|++|||+|.++++
T Consensus 568 g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~ 647 (704)
T 2rdo_7 568 GYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQES 647 (704)
T ss_pred CCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCEEECCEE
T ss_conf 87143379999964314788967899999999999999864981310079999996779876789878757966857355
Q ss_pred CCCCEEEEEEEECHHHHHCHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 7998699999901355420689840037761899989575012792279999999866
Q 004615 682 KPGGLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQE 739 (742)
Q Consensus 682 ~~g~~~~i~a~iP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~i~~~~~ 739 (742)
.+ +++.|+|++|++|||||+++||++|+|+|+|+|+|+||+++|++++++++++.++
T Consensus 648 ~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~~ 704 (704)
T 2rdo_7 648 EV-TGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEARGK 704 (704)
T ss_pred CC-CEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEECCCEECCCCHHHHHHHHHCC
T ss_conf 39-8399999966899866889868646894489999485139981599999997459
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=1.00 E-value=1 Score=1120.56 Aligned_cols=670 Identities=53% Similarity=0.914 Sum_probs=637.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCE-------------ECCCCCCCCCCHHHHHHCCEEECCEEEEEECCEEEEEECCCCCCC
Q ss_conf 9711799993223486543530-------------005985579907677624147523699996684799981999558
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGE-------------VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 132 (742)
Q Consensus 66 ~~~~~i~iiG~~~~Gk~t~~g~-------------v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGH~D 132 (742)
++++||+|+||+++||||++.. ++.|++++|+++.|++||+|+.+...++.|+++.+||||||||.|
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCCCC
T ss_conf 56619999999999999999999974698664431269842015614565257048612489988993499999959723
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 39999999986056999994889875107999999997299859999253588987677899999871995357882167
Q 004615 133 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 212 (742)
Q Consensus 133 F~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~ip~ii~INKiDr~~~~~~~~~~~i~~~l~~~~~~~~~P~~ 212 (742)
|..++.++++.+|++|+|+|+..|++.|++.+|+++...++|+++|+||+|+..+++.++++++++.++..+.+.++|+.
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ipis 167 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIG 167 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEEEC
T ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 58999999977999999987897774779999999997499979999787753331677899999984898405995224
Q ss_pred CCCCCEEEEECCCCEEEEEC-CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 88861045642354578743-77789414750573668999999999999999705999999886399999989999998
Q 004615 213 AEDNFKGVVDLVKMKAIIWS-GEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 291 (742)
Q Consensus 213 ~~~~~~g~idl~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~dd~lle~~l~~~~~~~~~l~~~l~ 291 (742)
.+..|.+++|++.++.+.|+ + .|+.+...+++.++.+....+|+.+++.+++.||++|++||++..++.++++..++
T Consensus 168 a~~~~~~l~d~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~ 245 (693)
T 2xex_A 168 AEDEFEAIIDLVEMKCFKYTND--LGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIR 245 (693)
T ss_dssp CGGGCCEEEETTTTEEEECCSS--SSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCCEEEEEECCEEEEECCC--CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 6777312456000136784168--88433782599789999999999999987517999999985689879999999999
Q ss_pred HHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEE
Q ss_conf 50003842345542546898849999999983999999878889999994111013469999839999998754998628
Q 004615 292 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 371 (742)
Q Consensus 292 ~~~~~~~~~Pv~~~Sa~~~~gi~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~i 371 (742)
+.+..+.++|++|+||++|.|++.||++|++++|+|.+++..++....++.....+.|++++|++++|||+..|++.|++
T Consensus 246 ~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~ 325 (693)
T 2xex_A 246 QATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKL 325 (693)
T ss_dssp HHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEE
T ss_pred HHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEE
T ss_conf 99984774269985510485899999999987899001245212377766652020379999669999974555887359
Q ss_pred EEEEEEEEEECCCCEEEECCCCCEEECCEEEEEECCCEEECCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 99999801765899799478984576241798303841111611389999981789654486340599865445567899
Q 004615 372 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPD 451 (742)
Q Consensus 372 ~~~RV~sG~l~~g~~i~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~ 451 (742)
+|+|||||+|++|++|++...++.++|++++.++|+++++++++.||||+++.|++++++|||||+.+.+..++++.+|+
T Consensus 326 ~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~~~~~ 405 (693)
T 2xex_A 326 TFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPE 405 (693)
T ss_dssp EEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCCSSCS
T ss_pred EEEEEEEEEEECCCEEEECCCCCEEEECEEEEEECCCCEECCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 99999761670699899468996699562899938984485403769889994755574599872698751357767899
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEECCEEEEEEE
Q ss_conf 51899998299757989999999987229920799828878089994285479999999985518189980763369853
Q 004615 452 PVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRES 531 (742)
Q Consensus 452 Pv~~~~Iep~~~~d~~kL~~~L~~l~~eDPsl~v~~~~etge~ii~G~GeLHLev~~~rL~~~~~iev~~~~p~V~yrEt 531 (742)
|+++++|+|++++|.+||.++|++|++|||+|++.+|++|||++|+|||||||||+++||+++|++++.+++|+|+||||
T Consensus 406 Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yrEt 485 (693)
T 2xex_A 406 PVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRET 485 (693)
T ss_dssp CSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECCEEE
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEECCEEEEEEE
T ss_conf 52999998688222999999999998659769999848899689995789999999999998749528996884788987
Q ss_pred EECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 20231024798520598865159999994325899846883224787774438999999999997596359971348999
Q 004615 532 ISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAA 611 (742)
Q Consensus 532 i~~~~~~~~~~~k~~~~~~~~~~v~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~ 611 (742)
|.++++..++|+||+||++||++++++++|+++|.|+.|++++.|+.+|++|+++|++||+|++++||||||||+||+|+
T Consensus 486 i~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~ 565 (693)
T 2xex_A 486 FKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAK 565 (693)
T ss_dssp ESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEE
T ss_pred ECCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 45520126751332589881699999999899999977875577876779999999999999984498068724327999
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEECCCCCCCCCEEEEEE
Q ss_conf 97132247899777999999999999998639936302049999807862678999981389210122247998699999
Q 004615 612 LVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDA 691 (742)
Q Consensus 612 l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~veI~~p~~~~g~V~~~L~~Rrg~i~~~~~~~g~~~~i~a 691 (742)
|+|+++|++||++++|+.|+++||++|+++|+|+||||||.++|.||++|+|+|+++|++|||+|.++++.+ +++.|+|
T Consensus 566 l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~-~~~~i~a 644 (693)
T 2xex_A 566 LYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRG-NAQVVNA 644 (693)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-TEEEEEE
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCEEECCCCCC-CEEEEEE
T ss_conf 996400478897799999999999999986697897305999999768998889999975786752642349-8399999
Q ss_pred EECHHHHHCHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 90135542068984003776189998957501279227999999986
Q 004615 692 LVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQ 738 (742)
Q Consensus 692 ~iP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~i~~~~ 738 (742)
++|++|||||+++||++|+|+|+|+|+|+||+++|++++++++++.+
T Consensus 645 ~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~ 691 (693)
T 2xex_A 645 YVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNK 691 (693)
T ss_dssp EEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHHHHT
T ss_pred EECHHHHHHHHHHHHHHCCCCEEEEEEECCCEECCHHHHHHHHHHHH
T ss_conf 90789987599985875489358999957323899239999999865
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=1.00 E-value=1 Score=1119.13 Aligned_cols=667 Identities=55% Similarity=0.932 Sum_probs=635.6
Q ss_pred CCCCEEEEEEECCCCCCCCCCE-------------ECCCCCCCCCCHHHHHHCCEEECCEEEEEECCEEEEEECCCCCCC
Q ss_conf 9711799993223486543530-------------005985579907677624147523699996684799981999558
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGE-------------VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 132 (742)
Q Consensus 66 ~~~~~i~iiG~~~~Gk~t~~g~-------------v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGH~D 132 (742)
++++||+|+||+++||||++.. ++.|++++|++++|++||+|+.+...++.|+++.+||||||||.|
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCCHHHHHCCCCCCCCEEEEEECCEEEEEEECCCCCC
T ss_conf 36548999999999899999999973698764403169955315744555256211045379998991799998958510
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 39999999986056999994889875107999999997299859999253588987677899999871995357882167
Q 004615 133 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 212 (742)
Q Consensus 133 F~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~ip~ii~INKiDr~~~~~~~~~~~i~~~l~~~~~~~~~P~~ 212 (742)
|..++.++++.+|++|+|+|+..|++.||+.+|+++...++|+++|+||+|+..+++.++++++++.++..+.+.++|+.
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi~ 169 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIG 169 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEES
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEECCCC
T ss_conf 58999999997899999998998863525999999997599979999798724477899999999986888651351113
Q ss_pred CCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 88861045642354578743777894147505736689999999999999997059999998863999999899999985
Q 004615 213 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 292 (742)
Q Consensus 213 ~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~dd~lle~~l~~~~~~~~~l~~~l~~ 292 (742)
.+..|.|++|++.++++.|+.. .|..+...+++.++.+....+|+.++|.+++.||++|++|+++..++.+++...+++
T Consensus 170 ~~~~~~g~~d~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~ 248 (691)
T 1dar_A 170 REDTFSGIIDVLRMKAYTYGND-LGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRK 248 (691)
T ss_dssp CGGGCCEEEETTTTEEEEECST-TSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHCCEEEEECCC-CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 7776101010111002672058-884558844997999999999999999875279999999977899999999999999
Q ss_pred HCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEE
Q ss_conf 00038423455425468988499999999839999998788899999941110134699998399999987549986289
Q 004615 293 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 372 (742)
Q Consensus 293 ~~~~~~~~Pv~~~Sa~~~~gi~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~i~ 372 (742)
.+..+.++|++|+||++|.|++.||++|++++|+|.+++..++... +.....+.|++++|++++|||+..+++.|+++
T Consensus 249 ~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~ 326 (691)
T 1dar_A 249 GTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP--EGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326 (691)
T ss_dssp HHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS--SSCEEEECCCTTSCCEEEEEEEEEETTTEEEE
T ss_pred HHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEEEECCCCCCEE
T ss_conf 9974967679973614686899999999986899022134333478--86420203688997289999877748887189
Q ss_pred EEEEEEEEECCCCEEEECCCCCEEECCEEEEEECCCEEECCCCCCCCEEEECCCCCCCCCCEEECCCCC-CCCCCCCCCC
Q ss_conf 999980176589979947898457624179830384111161138999998178965448634059986-5445567899
Q 004615 373 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP-ILLERMDFPD 451 (742)
Q Consensus 373 ~~RV~sG~l~~g~~i~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~-~~l~~~~~~~ 451 (742)
|+|||||+|++|++|++.+.++.++|++++.++|++++++++|.||||+++.|++++.+|||||+.+.+ ..++++.++.
T Consensus 327 ~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~~~~~ 406 (691)
T 1dar_A 327 FIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPE 406 (691)
T ss_dssp EEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC------
T ss_pred EEEEEEEEEECCCEEEECCCCCEEEECEEEEEECCCCEECCEECCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 99983536826999993689957997518999479814723226998899967666755999856887641457777898
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEECCEEEEEEE
Q ss_conf 51899998299757989999999987229920799828878089994285479999999985518189980763369853
Q 004615 452 PVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRES 531 (742)
Q Consensus 452 Pv~~~~Iep~~~~d~~kL~~~L~~l~~eDPsl~v~~~~etge~ii~G~GeLHLev~~~rL~~~~~iev~~~~p~V~yrEt 531 (742)
|+++++|+|++++|.+||.++|++|++|||+|++.+|++|||++++|||||||||+++||+++|++++.+++|+|+||||
T Consensus 407 P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yrEt 486 (691)
T 1dar_A 407 PVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRET 486 (691)
T ss_dssp --------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBCCEEE
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEECCEEEEEEE
T ss_conf 51999999789113999999999999669769999837889689982789999999999987509328981881789996
Q ss_pred EECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 20231024798520598865159999994325899846883224787774438999999999997596359971348999
Q 004615 532 ISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAA 611 (742)
Q Consensus 532 i~~~~~~~~~~~k~~~~~~~~~~v~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~ 611 (742)
|.++++..++|+||+||++||++++++++|+++|.|+.|++++.|+.+|++|+++|++||+|++++||||||||+||+|+
T Consensus 487 i~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~ 566 (691)
T 1dar_A 487 ITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVT 566 (691)
T ss_dssp CSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCSEEEE
T ss_pred ECCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 33402136630343589881589999999899899977854256775768899999999999984598168744408999
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEECCCCCCCCCEEEEEE
Q ss_conf 97132247899777999999999999998639936302049999807862678999981389210122247998699999
Q 004615 612 LVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDA 691 (742)
Q Consensus 612 l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~veI~~p~~~~g~V~~~L~~Rrg~i~~~~~~~g~~~~i~a 691 (742)
|+|+++|++||++++|+.|+++||++|+++|+|+||||||.++|.||++|+|+|+++|++|||+|.++++.+ +++.|+|
T Consensus 567 l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~-~~~~i~a 645 (691)
T 1dar_A 567 LYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRG-NAQVIRA 645 (691)
T ss_dssp EEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEET-TEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECHHHHHHHHHHHHHCCCEEECCEECC-CEEEEEE
T ss_conf 996100566762679999999999998887598996134999999767987679999987895665645239-8299999
Q ss_pred EECHHHHHCHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 901355420689840037761899989575012792279999999
Q 004615 692 LVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAK 736 (742)
Q Consensus 692 ~iP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~i~~ 736 (742)
++|++|||||+++||++|+|+|+|+|+|+||+++|++++++++++
T Consensus 646 ~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~ 690 (691)
T 1dar_A 646 FVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIKG 690 (691)
T ss_dssp EEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHC-
T ss_pred EECHHHHHHHHHHHHHHCCCCEEEEEEECCCEECCHHHHHHHHHC
T ss_conf 966899854889878765894489999583058991199999743
No 5
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=1101.12 Aligned_cols=604 Identities=25% Similarity=0.411 Sum_probs=562.8
Q ss_pred CCCEEEEEEECCCCCCC-------------CCCEECCCCCCCCCCHHHHHHCCEEECCEEEEEECCEEEEEECCCCCCCC
Q ss_conf 71179999322348654-------------35300059855799076776241475236999966847999819995583
Q 004615 67 SRRQFSVFAMAAEGRNY-------------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 133 (742)
Q Consensus 67 ~~~~i~iiG~~~~Gk~t-------------~~g~v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGH~DF 133 (742)
+||||+|+||++||||| ..|+|++|+++||++++||+|||||+++.++|.|++++|||||||||+||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHH
T ss_conf 95699999489999899999999974997515321268745688488986797689525999989989999979881788
Q ss_pred HHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99999999860569999948898751079999999972998599992535889876778999998719953578821678
Q 004615 134 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 213 (742)
Q Consensus 134 ~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~ip~ii~INKiDr~~~~~~~~~~~i~~~l~~~~~~~~~P~~~ 213 (742)
+.||+++|+++|+||+||||++||++||+++|++|.++++|+|+|||||||.++++.+++++++++|+..++..+.
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~---- 156 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK---- 156 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC----
T ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCE----
T ss_conf 9999999998598999996898974789999999997599828998423545689999999999986787321431----
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 88610456423545787437778941475057366899999999999999970599999988639999998999999850
Q 004615 214 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 293 (742)
Q Consensus 214 ~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~dd~lle~~l~~~~~~~~~l~~~l~~~ 293 (742)
+++..... . ..+. ...+.+.+++.||+++++|+++..++..++...++..
T Consensus 157 -------~~~~~~~~--------~-----~~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~ 206 (638)
T 3j25_A 157 -------VELYPNVC--------V-----TNFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 206 (638)
T ss_dssp -------CCSCGGGC--------C-----CCCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred -------EEEECCCC--------C-----CCCC----------HHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf -------57633421--------1-----1221----------5666445540667787653067756667788887664
Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEE
Q ss_conf 00384234554254689884999999998399999987888999999411101346999983999999875499862899
Q 004615 294 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 373 (742)
Q Consensus 294 ~~~~~~~Pv~~~Sa~~~~gi~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~i~~ 373 (742)
...+.+.|++||||+++.|+++|||+|++++|+|... ++.|++++|||+.+|++.|+++|
T Consensus 207 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~--------------------~~~~~~~~Vfk~~~d~~~G~la~ 266 (638)
T 3j25_A 207 FQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR--------------------GPSELCGNVFKIEYTKKRQRLAY 266 (638)
T ss_dssp HHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG--------------------SCCCCCBEEBCCCCCSTTCCCCB
T ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--------------------HHHHHCCEEEEEEEECCCCEEEE
T ss_conf 0245214632343425878342765432036675100--------------------01111214555442115855999
Q ss_pred EEEEEEEECCCCEEEECCCCCEEECCEEEEEECCCEEECCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCE
Q ss_conf 99980176589979947898457624179830384111161138999998178965448634059986544556789951
Q 004615 374 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPV 453 (742)
Q Consensus 374 ~RV~sG~l~~g~~i~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~Pv 453 (742)
+|||||+|+.|+++++.+.+ .+++.+++.++|.++++++++.||||+++.| ..+.+|+|+++...+..+..+.+|+|+
T Consensus 267 ~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv 344 (638)
T 3j25_A 267 IRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPL 344 (638)
T ss_dssp CCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCC
T ss_pred EEEECCCCCCCCCCCCCCCC-CEEEEEEECCCCCCCCCCCCCCCCEEEEEEC-CCCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 99973863378744345675-3168753012456554225113130899965-520447565589875445676688743
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEECCEEEEEEEEE
Q ss_conf 89999829975798999999998722992079982887808999428547999999998551818998076336985320
Q 004615 454 IKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESIS 533 (742)
Q Consensus 454 ~~~~Iep~~~~d~~kL~~~L~~l~~eDPsl~v~~~~etge~ii~G~GeLHLev~~~rL~~~~~iev~~~~p~V~yrEti~ 533 (742)
++++|+|.+++|.+||.++|++|++|||+++++.|++++|++|+|||||||||+++||+++||+++.+++|+|+|||||.
T Consensus 345 ~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~ 424 (638)
T 3j25_A 345 LQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPL 424 (638)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCC
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEC
T ss_conf 10222268867889999999987640871699863777349981220779999999999871980798489064799960
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 23102479852059886515999999432589984688322478777443899999999999759635997134899997
Q 004615 534 KVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALV 613 (742)
Q Consensus 534 ~~~~~~~~~~k~~~~~~~~~~v~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~ 613 (742)
+++ ++++++|+++++||+++++.++|+++++|+.|++++.++.+|++|+++|++||+|++++| |+||||+||+|+|.
T Consensus 425 ~~~--~~~~~~~~~~~~~~~~v~~~~eP~~~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~ 501 (638)
T 3j25_A 425 KNA--EYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFK 501 (638)
T ss_dssp SCC--EECCCCCSSSCCCCCCCCEECCCCCSSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCC
T ss_pred CCC--EEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCEEEEEE
T ss_conf 463--379999507987258999999546578885787301156252666657765199997246-56786014189999
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEECCCCCCCCCEEEEEEEE
Q ss_conf 13224789977799999999999999863993630204999980786267899998138921012224799869999990
Q 004615 614 DGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALV 693 (742)
Q Consensus 614 ~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~veI~~p~~~~g~V~~~L~~Rrg~i~~~~~~~g~~~~i~a~i 693 (742)
|+++|+++|++++|+.|+++||++|+++|+|+||||||.++|.||++|+|+|+++|++|||+|.++++.+ +..+|+|++
T Consensus 502 dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~-~~~~i~a~v 580 (638)
T 3j25_A 502 YGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN-NEVILSGEI 580 (638)
T ss_dssp CCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCT-TEEEEECCC
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHHHCCCEEECEEECC-CEEEEEEEE
T ss_conf 7865589998799999999999999987798898570899999898999999999986795893738549-919999998
Q ss_pred CHHHHHCHHHHHHCCCCCEEEEEEEECCCCCCCCHHH
Q ss_conf 1355420689840037761899989575012792279
Q 004615 694 PLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQ 730 (742)
Q Consensus 694 P~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~ 730 (742)
|++|||||+++||++|+|+|+|+|+|+||+++|+++.
T Consensus 581 P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp~ 617 (638)
T 3j25_A 581 PARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPV 617 (638)
T ss_dssp SSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCCS
T ss_pred CHHHHHCHHHHHHHHCCCCEEEEEEECCEEECCCCCC
T ss_conf 8788618889878448884799999886288999834
No 6
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=1.00 E-value=1 Score=1041.32 Aligned_cols=643 Identities=33% Similarity=0.597 Sum_probs=616.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCE-------------ECCCCCCCCCCHHHHHHCCEEECCEEEEEECCEEEEEECCCCCCC
Q ss_conf 9711799993223486543530-------------005985579907677624147523699996684799981999558
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGE-------------VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 132 (742)
Q Consensus 66 ~~~~~i~iiG~~~~Gk~t~~g~-------------v~~g~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTPGH~D 132 (742)
+..++|+|+||.++||||++.. |..|.+++|+.+.|++||||+.+....+.|+++.+||+|||||.|
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEEECCEEEEECCEEEEEEECCCCCC
T ss_conf 78829999999998299999999976598775633408954456887787569868704058864888999994889622
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 39999999986056999994889875107999999997299859999253588987677899999871995357882167
Q 004615 133 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 212 (742)
Q Consensus 133 F~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~ip~ii~INKiDr~~~~~~~~~~~i~~~l~~~~~~~~~P~~ 212 (742)
|..++.++++.+|++++|+|+.+|++.||+.+|+++...++|+++++||+|+. .++.++++++.+.++ .+.+.++|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~~Pi~ 164 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPIDLPLY 164 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHHHHHHC-CCCEEEEEEC
T ss_conf 69999999962695899986875550649999999987069989992377455-509999999999848-8416981102
Q ss_pred CCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 88861045642354578743777894147505736689999999999999997059999998863999999899999985
Q 004615 213 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 292 (742)
Q Consensus 213 ~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~dd~lle~~l~~~~~~~~~l~~~l~~ 292 (742)
.+..|.|++|++.++.|+|++ |. +...+++.++.+....+|+.++|.+++.||+++++|+++..++.++++..+++
T Consensus 165 ~~~~~~g~~d~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~ 240 (665)
T 2dy1_A 165 EGGKWVGLIDVFHGKAYRYEN---GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHE 240 (665)
T ss_dssp ETTEEEEEEETTTTEEEEEET---TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHEEECCC---CC-EEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 788621326543002166479---96-46704997999999999999999998289999999977899999999999999
Q ss_pred HCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEE
Q ss_conf 00038423455425468988499999999839999998788899999941110134699998399999987549986289
Q 004615 293 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 372 (742)
Q Consensus 293 ~~~~~~~~Pv~~~Sa~~~~gi~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~i~ 372 (742)
.+..+.++|++++||++|.|++.||++|++++|+|.+. ++++|++++|||+..+++.|+++
T Consensus 241 ~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~-------------------~~~~p~~~~V~k~~~d~~~G~~~ 301 (665)
T 2dy1_A 241 AVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER-------------------FGDGPPLAKVFKVQVDPFMGQVA 301 (665)
T ss_dssp HHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH-------------------HCSCSCEEEEEEEEEETTTEEEE
T ss_pred HHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC-------------------CCCCCEEEEEEEEEECCCCCEEE
T ss_conf 99859765899954236867899999999868994446-------------------89997699999877859997699
Q ss_pred EEEEEEEEECCCCEEEECCCCCEEECCEEEEEECCCEEECCCCCCCCEEEECCCCCCCCCCEEECCCCC--CCCCCCCCC
Q ss_conf 999980176589979947898457624179830384111161138999998178965448634059986--544556789
Q 004615 373 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP--ILLERMDFP 450 (742)
Q Consensus 373 ~~RV~sG~l~~g~~i~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~--~~l~~~~~~ 450 (742)
++||++|+|++||+|++.+ +.++|++++.++|++++++++|.||||+++.|++++.+|||||+.+.+ ..+++++++
T Consensus 302 ~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~~ 379 (665)
T 2dy1_A 302 YLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLP 379 (665)
T ss_dssp EEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCCC
T ss_pred EEEECCCEEECCCEEECCC--CEEEEEEEEEEECCCEEECCEECCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 9997402784699998699--70897278998079803887778999999968766746999836998663024777789
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEECCEEEEEE
Q ss_conf 95189999829975798999999998722992079982887808999428547999999998551818998076336985
Q 004615 451 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 530 (742)
Q Consensus 451 ~Pv~~~~Iep~~~~d~~kL~~~L~~l~~eDPsl~v~~~~etge~ii~G~GeLHLev~~~rL~~~~~iev~~~~p~V~yrE 530 (742)
.|+++++|+|++++|.+||.++|++|++|||++++.+|++|||++++|||||||||+++||+ +|++++.+++|+|+|||
T Consensus 380 ~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~yrE 458 (665)
T 2dy1_A 380 DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYRE 458 (665)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCCEE
T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHH-HCCCEEEEECCEEEEEE
T ss_conf 95399999988825599999999999976975999985899978999668999999999998-77950899588799998
Q ss_pred EEECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 32023102479852059886515999999432589984688322478777443899999999999759635997134899
Q 004615 531 SISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRA 610 (742)
Q Consensus 531 ti~~~~~~~~~~~k~~~~~~~~~~v~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v 610 (742)
||.+++++.++|+||+||++||++++++++|++ |+.|.+++.++.+|++|+++|++||+|++++||||||||+||+|
T Consensus 459 ti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~---g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v 535 (665)
T 2dy1_A 459 TIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS---EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKA 535 (665)
T ss_dssp EESSCEEEEEEEEEEETTEEEEEEEEEEEEECS---SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEE
T ss_pred EECCCEEEEEECCCCCCCCCCEEEEEEEEEECC---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 615641225530233589861699999999789---98786504677326999999999999998439826872461899
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEECCCCCCCCCEEEEE
Q ss_conf 99713224789977799999999999999863993630204999980786267899998138921012224799869999
Q 004615 611 ALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVD 690 (742)
Q Consensus 611 ~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~veI~~p~~~~g~V~~~L~~Rrg~i~~~~~~~g~~~~i~ 690 (742)
+|+|+++|.+||++++|+.|+++||++|+++|+|+||||||.++|.||++|+|+|+++|++|||+|.++++.+ +++.|+
T Consensus 536 ~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~ 614 (665)
T 2dy1_A 536 IVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG-ALSVVH 614 (665)
T ss_dssp EEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-TEEEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCEEECCEECC-CEEEEE
T ss_conf 9996300678898899999999999998864797898515999999878997779999987898886757139-819999
Q ss_pred EEECHHHHHCHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99013554206898400377618999895750127922799999998666
Q 004615 691 ALVPLAEMFQYVSALRGMTKGRASYIMQLAKFDVVPQHIQNQLAAKEQEV 740 (742)
Q Consensus 691 a~iP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~i~~~~~~ 740 (742)
|++|++|||||.++||++|+|+|+|+|+|+||+++|++++++++++.+.+
T Consensus 615 a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~~~~~~~~~ 664 (665)
T 2dy1_A 615 AEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRIVQERAQE 664 (665)
T ss_dssp EEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_pred EEECHHHHHHHHHHHHHHCCCCEEEEEEECCEEECCCCHHHHHHHHHHHC
T ss_conf 99788998548898676547847999995710488934899999987516
No 7
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=1.00 E-value=1 Score=1001.98 Aligned_cols=657 Identities=27% Similarity=0.386 Sum_probs=565.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCEECC-----------CCCCCCCCHHHHHHCCEEECCEEEEEEC----------------
Q ss_conf 9711799993223486543530005-----------9855799076776241475236999966----------------
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE-----------GTATMDWMEQEQERGITITSAATTTYWN---------------- 118 (742)
Q Consensus 66 ~~~~~i~iiG~~~~Gk~t~~g~v~~-----------g~~~~D~~~~E~erGITi~s~~~~~~~~---------------- 118 (742)
++++||+|+||+++||||++..+.. +++++|++++|++|||||+++..++.|+
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHCCEEEEECEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 36668999989999999999999972698552468973561484666654506752426899504554321122234689
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC-----------C
Q ss_conf 84799981999558399999999860569999948898751079999999972998599992535889-----------8
Q 004615 119 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-----------A 187 (742)
Q Consensus 119 ~~~inlIDTPGH~DF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~ip~ii~INKiDr~~-----------~ 187 (742)
++.+||||||||.||..++.++++.+|+||+|+|+++|++.||+++|+++...++|+++|+||||+.. .
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~ 176 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQ 176 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCHHHHHH
T ss_conf 83699997929551699999999767989999958988877899999999875998699998977511110357999999
Q ss_pred CHHHHHHHHHHHHC-----------CCCEEEEECCCCC----------------CCCEEEEECCCCEEE---EECCCCCC
Q ss_conf 76778999998719-----------9535788216788----------------861045642354578---74377789
Q 004615 188 NFFRTRDMIVTNLG-----------AKPLVVQLPVGAE----------------DNFKGVVDLVKMKAI---IWSGEELG 237 (742)
Q Consensus 188 ~~~~~~~~i~~~l~-----------~~~~~~~~P~~~~----------------~~~~g~idl~~~~~~---~~~~~~~g 237 (742)
++.+.+++++..+. ..|.+.++|++.+ .+|...++.+.++.| +|+.. +
T Consensus 177 ~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~--~ 254 (842)
T 1n0u_A 177 TFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK--T 254 (842)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT--T
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEECEEEEEEEEEECCCCCCCCHHHHHHHCCHHCCCCHHHHHHHHHCCCCCCCC--C
T ss_conf 99999999999986403334575030127720587254444201033554420210299789987888445411589--9
Q ss_pred CEEEEECCCH-------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC--CCCCHHHHH---HHHHHHCCCCCCEEEEEC
Q ss_conf 4147505736-------6899999999999999970599999988639--999998999---999850003842345542
Q 004615 238 AKFAYEDIPA-------NLQKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIK---KLIRKGTIAGSFVPVLCG 305 (742)
Q Consensus 238 ~~~~~~~~~~-------~~~~~~~~~~~~l~e~~~e~dd~lle~~l~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~~ 305 (742)
..+....++. .+.+...+.+..|+|.+++.||++|++||++ ..++.++++ +.+++.+ .+.|+|+
T Consensus 255 ~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~~pv--- 330 (842)
T 1n0u_A 255 KKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKFLPA--- 330 (842)
T ss_dssp TEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHHSBH---
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHCCCH---
T ss_conf 768991487113344678999999999999999982499999999997588999999853467899999-7520131---
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCE-EEEEEEEE
Q ss_conf 54689884999999998399999987888------999999411101346999983999999875499862-89999980
Q 004615 306 SAFKNKGVQPLLDAVVDYLPSPLDLPAMK------GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYA 378 (742)
Q Consensus 306 Sa~~~~gi~~LLd~i~~~lPsP~~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~-i~~~RV~s 378 (742)
+++|||+|++++|+|.+++.++ |. .++......+.|++++|++++|||+..+++.|+ ++|+||||
T Consensus 331 -------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~s 402 (842)
T 1n0u_A 331 -------ADALLEMIVLHLPSPVTAQAYRAEQLYEGP-ADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFA 402 (842)
T ss_dssp -------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSC-TTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEE
T ss_pred -------HHHHHHHHHHHCCCHHHHCCCCCCCCCCCC-CCCCCCCEEECCCCCCCEEEEEEEEEECCCCCCEEEEEEEEE
T ss_conf -------899999999868994683433112346776-665333102226999975999996144388770678999886
Q ss_pred EEECCCCEEE------ECCCCC---EEECCEEEEEECCCEEECCCCCCCCEEEECCCCCCCCC-CEEECCCCCCCCCCCC
Q ss_conf 1765899799------478984---57624179830384111161138999998178965448-6340599865445567
Q 004615 379 GTLSAGSYVL------NANKGK---KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITG-ETLCDADHPILLERMD 448 (742)
Q Consensus 379 G~l~~g~~i~------~~~~~~---~~kV~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~G-dtl~~~~~~~~l~~~~ 448 (742)
|+|+.|++|+ |.+.++ .+||++|+.++|++++++++|.|||||++.|++++.+| +|||+...+..+.++.
T Consensus 403 G~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~~ 482 (842)
T 1n0u_A 403 GTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMK 482 (842)
T ss_dssp SEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCCC
T ss_pred EEECCCCEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEECCCCCEECCEEECCCCCCCCCCCCC
T ss_conf 24638998996565556888764435893136765068643204357998899976634453652633898764456677
Q ss_pred CC-CCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHC-CEEEEEECCEE
Q ss_conf 89-95189999829975798999999998722992079982887808999428547999999998551-81899807633
Q 004615 449 FP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KVEANVGAPQV 526 (742)
Q Consensus 449 ~~-~Pv~~~~Iep~~~~d~~kL~~~L~~l~~eDPsl~v~~~~etge~ii~G~GeLHLev~~~rL~~~~-~iev~~~~p~V 526 (742)
+| .|+++++|+|+++.|.+||.++|++|++|||+|++.+| ||||++|+|||||||||+++||+++| |+++.+++|+|
T Consensus 483 ~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V 561 (842)
T 1n0u_A 483 FSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVV 561 (842)
T ss_dssp CCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCC
T ss_pred CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEECCCEE
T ss_conf 89995699998878877799999999999986992899996-89988999235999999999999874497347507678
Q ss_pred EEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEEECCC------------------------------------------
Q ss_conf 69853202310247985205988651599999943258------------------------------------------
Q 004615 527 NYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEA------------------------------------------ 564 (742)
Q Consensus 527 ~yrEti~~~~~~~~~~~k~~~~~~~~~~v~~~~~P~~~------------------------------------------ 564 (742)
+|||||.++++..+ +.+. ++.|.+++++++|+++
T Consensus 562 ~yrETi~~~~~~~~-~~~~---~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~ 637 (842)
T 1n0u_A 562 AYRETVESESSQTA-LSKS---PNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFG 637 (842)
T ss_dssp CCEEEESSCCSSCE-EEEC---TTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEES
T ss_pred EEEEEECCCCCCCE-EECC---CCCCEEEEEEEEECCHHHHHHHHCCEECCCCCHHHHHHHHHHHCCCCHHHHHCEEEEC
T ss_conf 88876436665312-2035---8861589999998967776676528111241177899998875173313230403305
Q ss_pred ---CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCC--HHHHHHHHHHHHHHHH
Q ss_conf ---99846883224787774438999999999997596359971348999971322478997--7799999999999999
Q 004615 565 ---GSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSS--VLAFQLAARGAFREGM 639 (742)
Q Consensus 565 ---~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~--~~~~~~a~~~a~~~a~ 639 (742)
+.+|+|++.++|+.++++|+++|++||+|++++|||||+||+||+|+|+|+++|.++++ .++|++|+++||++|+
T Consensus 638 p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~ 717 (842)
T 1n0u_A 638 PDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGF 717 (842)
T ss_dssp STTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 68888848875577755609999999999999984588478615507999997411377432133679999999999999
Q ss_pred HHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEECCCCCCCC-CEEEEEEEECHHHHHCHHHHHHCCCCCEEEEEEE
Q ss_conf 863993630204999980786267899998138921012224799-8699999901355420689840037761899989
Q 004615 640 RKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVVDALVPLAEMFQYVSALRGMTKGRASYIMQ 718 (742)
Q Consensus 640 ~~a~~~llEPi~~veI~~p~~~~g~V~~~L~~Rrg~i~~~~~~~g-~~~~i~a~iP~~e~~g~~~~Lrs~T~G~a~~~~~ 718 (742)
++|+|+||||||.|+|+||++++|+|+++|++|||+|+++++.+| ++++|+|++|++|||||+++|||+|+|+|+|+|+
T Consensus 718 ~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~ 797 (842)
T 1n0u_A 718 LLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMV 797 (842)
T ss_dssp HHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEE
T ss_pred HHCCCEEEEEEEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 86798687607999997268998789998874575885512479975089999858688633689878647897159999
Q ss_pred ECCCCCCCCH------HHHHHHHHHHHHH
Q ss_conf 5750127922------7999999986661
Q 004615 719 LAKFDVVPQH------IQNQLAAKEQEVA 741 (742)
Q Consensus 719 f~~y~~v~~~------~~~~~i~~~~~~~ 741 (742)
|+||+++|++ .+.+++.+.+.-|
T Consensus 798 F~~y~~vp~~~~~~~~~a~~~~~~~R~rK 826 (842)
T 1n0u_A 798 FDHWSTLGSDPLDPTSKAGEIVLAARKRH 826 (842)
T ss_dssp EEEEEECCSCTTCTTSHHHHHHHHHHHHT
T ss_pred ECCCEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 52303478873332569999999999738
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=1.00 E-value=1 Score=793.49 Aligned_cols=470 Identities=26% Similarity=0.396 Sum_probs=405.5
Q ss_pred CCCCEEEEEEECCCCCCC-------------CCCEECCC----CCCCCCCHHHHHHCCEEECCEEEEEECCEEEEEECCC
Q ss_conf 971179999322348654-------------35300059----8557990767762414752369999668479998199
Q 004615 66 RSRRQFSVFAMAAEGRNY-------------KIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 128 (742)
Q Consensus 66 ~~~~~i~iiG~~~~Gk~t-------------~~g~v~~g----~~~~D~~~~E~erGITi~s~~~~~~~~~~~inlIDTP 128 (742)
.++|||+|+||++||||| ++|+|++| +++||++++||+|||||+++.++|.|++++|||||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCEEECEEEEEECCEEEEEEECC
T ss_conf 36666999908998899999999986686321541643766554336772889877974750469998799899999698
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 95583999999998605699999488987510799999999729985999925358898767789999987199535788
Q 004615 129 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 208 (742)
Q Consensus 129 GH~DF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~ip~ii~INKiDr~~~~~~~~~~~i~~~l~~~~~~~~ 208 (742)
||+||++||+|+|+++||||+||||++||++||+++|++|.++++|+++|||||||.++++.+++++++++|+..++|+|
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 82777899999997568059983058873044188999998718736988734660110266754455542388247677
Q ss_pred ECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-CCCCCCHHHHH
Q ss_conf 21678886104564235457874377789414750573668999999999999999705999999886-39999998999
Q 004615 209 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL-EGNEPDEETIK 287 (742)
Q Consensus 209 ~P~~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~dd~lle~~l-~~~~~~~~~l~ 287 (742)
+|++.+..|.|++|++.++++.|.....+.......+.....+...++.....+. .+..++.+. .+.....
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~---- 260 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQ----LRMDLALLEEAGTPFDE---- 260 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHH----HHHHHHHHHHHCCCCCH----
T ss_pred EEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHCCCCHHH----
T ss_conf 2251588533057653134321042337864323232235438899988888887----66689887540573649----
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC--
Q ss_conf 999850003842345542546898849999999983999999878889999994111013469999839999998754--
Q 004615 288 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD-- 365 (742)
Q Consensus 288 ~~l~~~~~~~~~~Pv~~~Sa~~~~gi~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~-- 365 (742)
...+.+.++||+||||++|.|+++|||+|++++|+|.+.+...+ ...+.+.|+.++|||+..+
T Consensus 261 ----e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~-----------~~~~~~~p~~a~vfKi~~~~~ 325 (548)
T 3vqt_A 261 ----ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATR-----------VVEPGEEAFTGVVFKIQANMD 325 (548)
T ss_dssp ----HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSS-----------EECTTCSSCEEEEEEEECC--
T ss_pred ----HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-----------CCCCCCCCCEEEEEEEECCCC
T ss_conf ----99982983102614545585899999999974799877543234-----------558997674379999970577
Q ss_pred -CCCCEEEEEEEEEEEECCCCEEEECCCCCEEECCEEEEEECCCEEECCCCCCCCEEEECCCCCCCCCCEEECCCCCCCC
Q ss_conf -9986289999980176589979947898457624179830384111161138999998178965448634059986544
Q 004615 366 -PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILL 444 (742)
Q Consensus 366 -~~~G~i~~~RV~sG~l~~g~~i~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l 444 (742)
++.|+++|+|||||+|++|++|++.+.++.+||++++.++|++++++++|.|||||++.|++++.+|||||+.+.+..+
T Consensus 326 ~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~ 405 (548)
T 3vqt_A 326 KAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKF 405 (548)
T ss_dssp -----CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCB
T ss_pred CCCCCEEEEEEEECCEECCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCEEECCCEEEECCCCCCCCCCEECCCCCCCCC
T ss_conf 67787699999853544589989841233300001133420566643678846989985687667637881689876545
Q ss_pred CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEE----
Q ss_conf 5567899518999982997579899999999872299207998288780899942854799999999855181899----
Q 004615 445 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEAN---- 520 (742)
Q Consensus 445 ~~~~~~~Pv~~~~Iep~~~~d~~kL~~~L~~l~~eDPsl~v~~~~etge~ii~G~GeLHLev~~~rL~~~~~iev~---- 520 (742)
.++++++|+++++|+|+++.|.++|.++|++|+++|| +++.++++++|++|+|||||||||+++||+++||+++.
T Consensus 406 ~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v 484 (548)
T 3vqt_A 406 VGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGV 484 (548)
T ss_dssp CCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC-EEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 7889999850112465792069999999997644586-059998889968999878999999999999985997797424
Q ss_pred -EECCEEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEEE
Q ss_conf -807633698532023102479852059886515999999
Q 004615 521 -VGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRF 559 (742)
Q Consensus 521 -~~~p~V~yrEti~~~~~~~~~~~k~~~~~~~~~~v~~~~ 559 (742)
++.|+|+|||||.+.+++.++|++|+|+++|++.+++.-
T Consensus 485 ~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~~ 524 (548)
T 3vqt_A 485 STHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAP 524 (548)
T ss_dssp SCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEES
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHEEEECCCCCEEEEEC
T ss_conf 6567267846886425665201100240048998799836
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=1.00 E-value=1 Score=678.49 Aligned_cols=453 Identities=26% Similarity=0.454 Sum_probs=402.2
Q ss_pred CCCCEEEEEEECCCCCCCCCCEECC----------CCCCCCCCHHHHHHCCEEECCEEEEEECC-----EEEEEECCCCC
Q ss_conf 9711799993223486543530005----------98557990767762414752369999668-----47999819995
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE----------GTATMDWMEQEQERGITITSAATTTYWNK-----HRINIIDTPGH 130 (742)
Q Consensus 66 ~~~~~i~iiG~~~~Gk~t~~g~v~~----------g~~~~D~~~~E~erGITi~s~~~~~~~~~-----~~inlIDTPGH 130 (742)
++++||+|+||+++||||+++.+.. +++++|+++.|++|||||++..+++.|+. +.+||||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 57339999999998799999999850698544432121146541332166235332799999737997589999989793
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 58399999999860569999948898751079999999972998599992535889876778999998719953578821
Q 004615 131 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 131 ~DF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~ip~ii~INKiDr~~~~~~~~~~~i~~~l~~~~~~~~~P 210 (742)
.||..++.++++.+|+||+|||+.+|++.||..+|.++...++|+++|+||||+..+++.+..+++.+.++..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~------- 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD------- 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC-------
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC-------
T ss_conf 7679999999986899999997998866879999999987799789998546765467899999988762877-------
Q ss_pred CCCCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 67888610456423545787437778941475057366899999999999999970599999988639999998999999
Q 004615 211 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 290 (742)
Q Consensus 211 ~~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~dd~lle~~l~~~~~~~~~l~~~l 290 (742)
T Consensus 157 -------------------------------------------------------------------------------- 156 (600)
T 2ywe_A 157 -------------------------------------------------------------------------------- 156 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCE
Q ss_conf 85000384234554254689884999999998399999987888999999411101346999983999999875499862
Q 004615 291 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 370 (742)
Q Consensus 291 ~~~~~~~~~~Pv~~~Sa~~~~gi~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~ 370 (742)
..+++++||++|.|++.||+++++++|+|.. +++.|+.++||++..+++.|.
T Consensus 157 --------~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~lV~~~~~d~~~G~ 208 (600)
T 2ywe_A 157 --------PEEAILASAKEGIGIEEILEAIVNRIPPPKG--------------------DPQKPLKALIFDSYYDPYRGA 208 (600)
T ss_dssp --------GGGCEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEETTTEE
T ss_pred --------CCCEEEEEEECCCCCHHHHHHHHHHCCCCCC--------------------CCCCCCCEEEEEEEECCCCEE
T ss_conf --------6427999840588806899999874522212--------------------346775046998752256508
Q ss_pred EEEEEEEEEEECCCCEEEECCCCCEEECCEEEEEECCCEEECCCCCCCCEEEEC-C---CCCCCCCCEEECCCCC--CCC
Q ss_conf 899999801765899799478984576241798303841111611389999981-7---8965448634059986--544
Q 004615 371 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP--ILL 444 (742)
Q Consensus 371 i~~~RV~sG~l~~g~~i~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~Gdtl~~~~~~--~~l 444 (742)
++++||++|+|++||.+++.+.++..+|++++.+.+. ..+++++.||||+++. | ++++.+||||+..+.+ .++
T Consensus 209 v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~-~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l 287 (600)
T 2ywe_A 209 VAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPK-MTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPV 287 (600)
T ss_dssp EEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSS-EEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCC
T ss_pred EEEEEEEECEEECCCEEEECCCCCEEEEECCCCCCCC-CEECCEEECCCEEEEECCCCCHHHCCCCCEEEECCCCCCCCC
T ss_conf 9999998288961999986156515763013333798-459778744834345336442622667998983787554466
Q ss_pred CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE-----CCHHHHHHHHHHHHHHCCEEE
Q ss_conf 556789951899998299757989999999987229920799828878089994-----285479999999985518189
Q 004615 445 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEA 519 (742)
Q Consensus 445 ~~~~~~~Pv~~~~Iep~~~~d~~kL~~~L~~l~~eDPsl~v~~~~etge~ii~G-----~GeLHLev~~~rL~~~~~iev 519 (742)
+++.+++|+++++++|.+++|.++|.++|++|.+|||+|++. ++|+|.++.| ||||||||+++||+++||+++
T Consensus 288 ~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v 365 (600)
T 2ywe_A 288 PGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKI 365 (600)
T ss_dssp SCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEE--ECCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEE
T ss_conf 777888737999861366664999999999876529889999--777522355169985318799999999986539269
Q ss_pred EEECCEEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98076336985320231024798520598865159999994325899846883224787774438999999999997596
Q 004615 520 NVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGV 599 (742)
Q Consensus 520 ~~~~p~V~yrEti~~~~~~~~~~~k~~~~~~~~~~v~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~Gp 599 (742)
.+++|+|+||||+.+. |++ +.++ | |
T Consensus 366 ~~~~P~V~yreti~~~--------------g~~----~~~~-----------~--------------------------p 390 (600)
T 2ywe_A 366 ITTAPNVIYRVKKKFT--------------DEV----IEVR-----------N--------------------------P 390 (600)
T ss_dssp EECCCEECEEEEETTC--------------SSC----EEES-----------S--------------------------G
T ss_pred EEEEEEEEEEEEECCC--------------CCE----EEEE-----------C--------------------------H
T ss_conf 9985168889886389--------------738----9971-----------7--------------------------5
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEECCC
Q ss_conf 35997134899997132247899777999999999999998639936302049999807862678999981389210122
Q 004615 600 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSF 679 (742)
Q Consensus 600 l~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~veI~~p~~~~g~V~~~L~~Rrg~i~~~ 679 (742)
.++|+.| +.. +.||||||.++|.+|++|+|+|+++|++|||++.++
T Consensus 391 -~~~p~~~---------------~~~------------------~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~ 436 (600)
T 2ywe_A 391 -MDFPDNA---------------GLI------------------EYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNM 436 (600)
T ss_dssp -GGSCSCG---------------GGE------------------EEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred -HHCCCCC---------------CCC------------------CCCCCCEEEEEEEECHHHHHHHHHHHHHCCCEEECC
T ss_conf -5589877---------------544------------------413597389999945788899999998749688453
Q ss_pred CCCCCCEEEEEEEECHHHH-HCHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf 2479986999999013554-206898400377618999895750127
Q 004615 680 GDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 725 (742)
Q Consensus 680 ~~~~g~~~~i~a~iP~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 725 (742)
++.++++..|+|.+|++|| +||.++|||+|+|+|+|+|+|+||+++
T Consensus 437 ~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~ 483 (600)
T 2ywe_A 437 TYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483 (600)
T ss_dssp EEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred EECCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEC
T ss_conf 87579889999997189987659896051178759999896461482
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=1.00 E-value=1 Score=663.35 Aligned_cols=450 Identities=27% Similarity=0.404 Sum_probs=399.2
Q ss_pred CCCCEEEEEEECCCCCCCCCCEECC----------CCCCCCCCHHHHHHCCEEECCEEEEEEC-----CEEEEEECCCCC
Q ss_conf 9711799993223486543530005----------9855799076776241475236999966-----847999819995
Q 004615 66 RSRRQFSVFAMAAEGRNYKIGEVHE----------GTATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDTPGH 130 (742)
Q Consensus 66 ~~~~~i~iiG~~~~Gk~t~~g~v~~----------g~~~~D~~~~E~erGITi~s~~~~~~~~-----~~~inlIDTPGH 130 (742)
+++|||+|+||+++||||+++.+.. +++++|+++.|++||||+++..+++.|+ ++.+||||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 98729999999999899999999973599654332220146642332056036556999998637897589999989894
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 58399999999860569999948898751079999999972998599992535889876778999998719953578821
Q 004615 131 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 210 (742)
Q Consensus 131 ~DF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~ip~ii~INKiDr~~~~~~~~~~~i~~~l~~~~~~~~~P 210 (742)
.||..++.++++.+|+|++|+|+.+|++.||+.+|.++...++|+++|+||+|+..+++.+..+++.+.++..
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~------- 154 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGID------- 154 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC-------
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC-------
T ss_conf 6778999999987999999997998987778999999997799789854036754333789999999874777-------
Q ss_pred CCCCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 67888610456423545787437778941475057366899999999999999970599999988639999998999999
Q 004615 211 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 290 (742)
Q Consensus 211 ~~~~~~~~g~idl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~dd~lle~~l~~~~~~~~~l~~~l 290 (742)
T Consensus 155 -------------------------------------------------------------------------------- 154 (599)
T 3cb4_D 155 -------------------------------------------------------------------------------- 154 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCE
Q ss_conf 85000384234554254689884999999998399999987888999999411101346999983999999875499862
Q 004615 291 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 370 (742)
Q Consensus 291 ~~~~~~~~~~Pv~~~Sa~~~~gi~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~G~ 370 (742)
..+++++||++|.|++.|++++.+++|+|.. +++.|+.++||++..+++.|.
T Consensus 155 --------~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~--------------------~~~~p~~alI~d~~~d~~~G~ 206 (599)
T 3cb4_D 155 --------ATDAVRCSAKTGVGVQDVLERLVRDIPPPEG--------------------DPEGPLQALIIDSWFDNYLGV 206 (599)
T ss_dssp --------CTTCEEECTTTCTTHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEETTTEE
T ss_pred --------CCEEEEEECCCCCCCHHHHHHHHHCCCCCCC--------------------CCCCCCEEEEEECCCCCCCCE
T ss_conf --------5307885212688832578887404778544--------------------456775345641001566517
Q ss_pred EEEEEEEEEEECCCCEEEECCCCCEEECCEEEEEECCCEEECCCCCCCCEEEEC-CC---CCCCCCCEEECCCCC--CCC
Q ss_conf 899999801765899799478984576241798303841111611389999981-78---965448634059986--544
Q 004615 371 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-GL---KDTITGETLCDADHP--ILL 444 (742)
Q Consensus 371 i~~~RV~sG~l~~g~~i~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdIv~i~-gl---~~~~~Gdtl~~~~~~--~~l 444 (742)
++++||++|+|+.||++.+.++++.++|.+++.+.+. ..+++++.|||++++. |+ +++.+|||+++.+.+ .++
T Consensus 207 v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l 285 (599)
T 3cb4_D 207 VSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKAL 285 (599)
T ss_dssp EEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCC
T ss_pred EEEEEEEECEEECCCEEEECCCCCEEEEEEEEECCCC-CEECCEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 9999997087946998886156521478654203577-429888848983671506553123756887640677532232
Q ss_pred CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE-----CCHHHHHHHHHHHHHHCCEEE
Q ss_conf 556789951899998299757989999999987229920799828878089994-----285479999999985518189
Q 004615 445 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKVEA 519 (742)
Q Consensus 445 ~~~~~~~Pv~~~~Iep~~~~d~~kL~~~L~~l~~eDPsl~v~~~~etge~ii~G-----~GeLHLev~~~rL~~~~~iev 519 (742)
+++.+++|+++++++|.+..|.++|.++|.+|.++||+|++. ++++|.++.| ||||||||+++||+++||+++
T Consensus 286 ~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~ 363 (599)
T 3cb4_D 286 PGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDL 363 (599)
T ss_dssp TTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCE
T ss_pred CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEE--ECCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEE
T ss_conf 344578861578998458667899999999988549679999--635311355169984458799999999998709469
Q ss_pred EEECCEEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98076336985320231024798520598865159999994325899846883224787774438999999999997596
Q 004615 520 NVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMEAGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGV 599 (742)
Q Consensus 520 ~~~~p~V~yrEti~~~~~~~~~~~k~~~~~~~~~~v~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~Gp 599 (742)
.+++|+|+||||+.+. +++.|.| |
T Consensus 364 ~~~~P~V~yreti~~g------------------------------~~~~~~~-------p------------------- 387 (599)
T 3cb4_D 364 ITTAPTVVYEVETTSR------------------------------EVIYVDS-------P------------------- 387 (599)
T ss_dssp EECCCEECEEEEESSS------------------------------CEEEESS-------G-------------------
T ss_pred EEEEEEEEEEEEECCC------------------------------CEEEECC-------H-------------------
T ss_conf 9983047789986589------------------------------6699658-------6-------------------
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEECCC
Q ss_conf 35997134899997132247899777999999999999998639936302049999807862678999981389210122
Q 004615 600 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSF 679 (742)
Q Consensus 600 l~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEPi~~veI~~p~~~~g~V~~~L~~Rrg~i~~~ 679 (742)
.++|.. ++ -..||||||.++|.+|++|+|+|+++|++|||++.++
T Consensus 388 -~~~p~~----------------~~------------------~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~ 432 (599)
T 3cb4_D 388 -SKLPAV----------------NN------------------IYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNM 432 (599)
T ss_dssp -GGSCCG----------------GG------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred -HHCCCC----------------CC------------------CCHHHCCCEEEEEEECHHHHHHHHHHHHHCCCEEECC
T ss_conf -658886----------------65------------------5641165038999928889999999998728187573
Q ss_pred CCCCCCEEEEEEEECHHHH-HCHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf 2479986999999013554-206898400377618999895750127
Q 004615 680 GDKPGGLKVVDALVPLAEM-FQYVSALRGMTKGRASYIMQLAKFDVV 725 (742)
Q Consensus 680 ~~~~g~~~~i~a~iP~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v 725 (742)
++.+ ++..|+|.+|++|| +||.++|||+|+|+|+|+|+|+||+++
T Consensus 433 ~~~~-~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 433 VYHG-NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp ECCT-TEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred EECC-CEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEE
T ss_conf 8638-849999996379988889896040277679999985474682
Done!