Query 004616
Match_columns 742
No_of_seqs 524 out of 2418
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4271 Rho-GTPase activating 100.0 5.5E-46 1.2E-50 421.6 21.4 623 97-737 286-953 (1100)
2 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 5.4E-40 1.2E-44 331.0 17.1 192 165-376 1-192 (192)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 1.2E-39 2.5E-44 329.1 19.0 189 166-372 1-194 (194)
4 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.7E-39 3.7E-44 330.1 19.1 197 163-375 2-202 (203)
5 cd04390 RhoGAP_ARHGAP22_24_25 100.0 4.1E-39 8.9E-44 326.3 18.6 191 164-372 1-199 (199)
6 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 6.4E-39 1.4E-43 328.8 18.8 200 165-376 1-209 (216)
7 cd04407 RhoGAP_myosin_IXB RhoG 100.0 8.1E-39 1.8E-43 320.7 18.8 185 166-367 1-186 (186)
8 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 1.1E-38 2.4E-43 327.6 18.6 210 163-376 2-218 (220)
9 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 6.1E-39 1.3E-43 320.7 16.2 176 166-374 1-181 (182)
10 KOG1451 Oligophrenin-1 and rel 100.0 4E-37 8.7E-42 335.6 31.1 303 15-376 261-571 (812)
11 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 2.1E-38 4.5E-43 324.4 17.6 192 166-376 1-211 (213)
12 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 2.2E-38 4.8E-43 319.9 17.4 190 164-367 1-195 (195)
13 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 5E-38 1.1E-42 315.4 17.8 183 166-367 1-187 (187)
14 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 4.6E-38 9.9E-43 315.9 17.2 184 164-367 1-188 (188)
15 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 7.2E-38 1.6E-42 316.5 18.4 190 165-372 1-196 (196)
16 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 1E-37 2.2E-42 315.1 19.1 190 162-372 2-195 (195)
17 cd04406 RhoGAP_myosin_IXA RhoG 100.0 9.3E-38 2E-42 313.1 17.2 184 166-366 1-185 (186)
18 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.5E-37 3.2E-42 315.6 18.8 195 165-376 1-199 (202)
19 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1.5E-37 3.2E-42 315.1 18.2 186 166-367 1-200 (200)
20 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 2.9E-37 6.4E-42 314.0 18.3 187 177-376 6-204 (206)
21 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 2.9E-37 6.4E-42 310.6 16.3 177 165-374 1-189 (190)
22 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 3.8E-37 8.2E-42 310.1 17.1 185 166-372 1-192 (192)
23 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 5.3E-37 1.1E-41 316.4 18.5 188 165-372 1-225 (225)
24 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 4.5E-37 9.7E-42 312.3 17.5 187 166-367 1-203 (203)
25 cd04377 RhoGAP_myosin_IX RhoGA 100.0 6E-37 1.3E-41 307.4 18.1 185 166-367 1-186 (186)
26 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 6.5E-37 1.4E-41 306.8 18.0 161 166-327 1-163 (185)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 8E-37 1.7E-41 312.1 18.2 187 166-367 1-211 (211)
28 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 2.5E-36 5.3E-41 305.0 19.0 163 166-329 1-167 (196)
29 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 2.4E-36 5.2E-41 303.7 18.3 184 164-367 1-189 (189)
30 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 3.8E-36 8.3E-41 306.3 17.6 186 166-376 1-200 (208)
31 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 7.1E-36 1.5E-40 303.9 19.2 195 166-368 1-206 (207)
32 KOG4407 Predicted Rho GTPase-a 100.0 1.2E-36 2.6E-41 351.0 9.1 335 19-376 923-1358(1973)
33 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 3E-35 6.5E-40 294.6 18.0 180 167-368 2-184 (184)
34 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 6.4E-35 1.4E-39 294.1 18.4 178 177-371 14-192 (193)
35 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 4.5E-35 9.8E-40 299.3 16.7 189 166-374 1-210 (212)
36 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 7.1E-35 1.5E-39 292.5 16.8 178 166-367 1-187 (187)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 9.8E-35 2.1E-39 294.7 16.8 171 178-367 26-203 (203)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 4.7E-34 1E-38 287.7 17.0 177 170-368 5-184 (200)
39 KOG1117 Rho- and Arf-GTPase ac 100.0 6.1E-33 1.3E-37 312.5 16.8 323 17-376 490-900 (1186)
40 KOG1450 Predicted Rho GTPase-a 100.0 2.9E-31 6.3E-36 299.6 18.3 320 34-373 270-649 (650)
41 smart00324 RhoGAP GTPase-activ 100.0 4.4E-31 9.6E-36 261.1 17.1 170 179-367 2-173 (174)
42 KOG4270 GTPase-activator prote 100.0 3.1E-29 6.6E-34 282.8 27.6 205 157-377 138-348 (577)
43 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 1.1E-29 2.3E-34 261.4 15.0 142 179-327 49-195 (220)
44 KOG2200 Tumour suppressor prot 100.0 6.5E-30 1.4E-34 281.0 13.5 209 163-376 298-514 (674)
45 cd00159 RhoGAP RhoGAP: GTPase- 100.0 6.6E-29 1.4E-33 243.0 17.7 168 181-367 1-169 (169)
46 KOG4269 Rac GTPase-activating 100.0 1.5E-29 3.3E-34 286.8 11.4 184 160-376 894-1087(1112)
47 PF00620 RhoGAP: RhoGAP domain 100.0 2.4E-28 5.2E-33 235.6 10.3 145 181-326 1-147 (151)
48 KOG4406 CDC42 Rho GTPase-activ 99.9 1.5E-27 3.2E-32 254.7 14.3 201 157-377 245-450 (467)
49 KOG2710 Rho GTPase-activating 99.9 1.4E-26 3.1E-31 252.4 15.0 204 162-376 63-295 (412)
50 KOG4724 Predicted Rho GTPase-a 99.9 1.2E-26 2.6E-31 258.1 7.8 241 159-422 76-316 (741)
51 PF14389 Lzipper-MIP1: Leucine 99.9 2.2E-24 4.8E-29 190.1 10.2 87 614-700 1-88 (88)
52 KOG1453 Chimaerin and related 99.9 4.6E-24 1E-28 257.6 10.7 162 165-327 602-771 (918)
53 KOG3564 GTPase-activating prot 99.9 1.1E-22 2.3E-27 219.3 14.7 147 178-326 360-507 (604)
54 KOG1452 Predicted Rho GTPase-a 99.7 2.8E-17 6.1E-22 170.2 12.0 164 163-327 182-353 (442)
55 KOG4271 Rho-GTPase activating 99.7 6.4E-18 1.4E-22 194.1 8.0 161 162-323 914-1076(1100)
56 cd01251 PH_centaurin_alpha Cen 99.7 3.5E-16 7.5E-21 142.6 11.3 100 21-125 1-101 (103)
57 cd01233 Unc104 Unc-104 pleckst 99.7 5.8E-16 1.3E-20 140.3 12.0 92 19-124 2-98 (100)
58 cd04405 RhoGAP_BRCC3-like RhoG 99.6 1.4E-15 3E-20 154.7 12.5 185 164-376 20-232 (235)
59 cd01264 PH_melted Melted pleck 99.6 2.3E-15 5E-20 136.1 10.2 91 21-124 2-101 (101)
60 cd01260 PH_CNK Connector enhan 99.6 8E-15 1.7E-19 131.4 11.1 93 21-123 2-96 (96)
61 cd01238 PH_Tec Tec pleckstrin 99.6 7.2E-15 1.6E-19 134.6 10.0 94 20-123 1-106 (106)
62 cd01265 PH_PARIS-1 PARIS-1 ple 99.6 1.3E-14 2.9E-19 130.2 10.9 88 22-123 2-93 (95)
63 cd01235 PH_SETbf Set binding f 99.6 1.5E-14 3.2E-19 130.4 10.4 90 21-124 1-101 (101)
64 cd01252 PH_cytohesin Cytohesin 99.5 4.6E-14 1E-18 132.9 12.3 99 20-129 1-118 (125)
65 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.5 3.2E-14 6.9E-19 143.3 11.0 144 182-327 8-166 (198)
66 cd01247 PH_GPBP Goodpasture an 99.5 4.6E-14 1E-18 125.8 10.3 89 22-122 2-90 (91)
67 cd01241 PH_Akt Akt pleckstrin 99.5 7.8E-14 1.7E-18 126.9 11.0 97 19-123 1-101 (102)
68 cd01236 PH_outspread Outspread 99.5 6.5E-14 1.4E-18 127.6 9.4 89 21-121 1-101 (104)
69 cd01257 PH_IRS Insulin recepto 99.5 1.7E-13 3.7E-18 124.4 10.2 92 18-122 1-100 (101)
70 cd01266 PH_Gab Gab (Grb2-assoc 99.5 2.6E-13 5.7E-18 124.6 10.3 88 22-123 2-107 (108)
71 cd01246 PH_oxysterol_bp Oxyste 99.4 1E-12 2.2E-17 115.4 10.0 91 21-123 1-91 (91)
72 cd01250 PH_centaurin Centaurin 99.4 9.6E-13 2.1E-17 116.3 9.6 92 21-122 1-93 (94)
73 cd01244 PH_RasGAP_CG9209 RAS_G 99.4 2E-12 4.4E-17 116.7 9.8 77 34-123 18-98 (98)
74 cd01245 PH_RasGAP_CG5898 RAS G 99.4 2.4E-12 5.2E-17 116.1 8.6 88 22-122 2-97 (98)
75 cd01263 PH_anillin Anillin Ple 99.3 6E-12 1.3E-16 117.8 10.1 97 20-122 2-121 (122)
76 PF00169 PH: PH domain; Inter 99.3 1.9E-11 4E-16 108.2 12.3 101 19-124 1-103 (104)
77 cd01253 PH_beta_spectrin Beta- 99.3 2E-11 4.3E-16 111.0 9.7 85 33-122 19-103 (104)
78 cd01230 PH_EFA6 EFA6 Pleckstri 99.2 4.9E-11 1.1E-15 111.1 11.2 101 21-125 2-112 (117)
79 KOG0930 Guanine nucleotide exc 99.2 2.7E-11 5.8E-16 124.5 9.3 101 19-129 260-380 (395)
80 PF15413 PH_11: Pleckstrin hom 99.2 1E-10 2.2E-15 108.4 9.6 97 21-123 1-112 (112)
81 KOG4370 Ral-GTPase effector RL 99.2 4.1E-11 8.9E-16 129.1 7.6 170 179-381 70-280 (514)
82 cd01237 Unc112 Unc-112 pleckst 99.1 2.3E-10 5E-15 103.8 10.1 92 28-124 11-103 (106)
83 KOG3565 Cdc42-interacting prot 99.1 1.5E-10 3.3E-15 134.7 7.9 147 178-326 216-366 (640)
84 cd01219 PH_FGD FGD (faciogenit 99.1 1.1E-09 2.3E-14 99.7 11.4 98 19-125 2-100 (101)
85 cd01254 PH_PLD Phospholipase D 99.0 1.1E-09 2.3E-14 102.9 10.3 76 36-123 32-121 (121)
86 PF15410 PH_9: Pleckstrin homo 99.0 2.4E-09 5.2E-14 100.2 11.1 103 20-124 1-118 (119)
87 PF15409 PH_8: Pleckstrin homo 99.0 2E-09 4.4E-14 95.1 9.9 86 23-123 1-88 (89)
88 smart00233 PH Pleckstrin homol 99.0 6.9E-09 1.5E-13 90.0 11.7 97 19-124 1-101 (102)
89 cd01256 PH_dynamin Dynamin ple 98.8 1.8E-08 3.9E-13 89.3 9.2 99 19-123 1-104 (110)
90 KOG0690 Serine/threonine prote 98.8 8.4E-09 1.8E-13 109.2 6.4 108 14-127 10-119 (516)
91 cd01249 PH_oligophrenin Oligop 98.8 5.7E-08 1.2E-12 88.0 10.3 97 21-121 1-102 (104)
92 cd00821 PH Pleckstrin homology 98.7 5.4E-08 1.2E-12 83.5 8.7 93 21-122 1-95 (96)
93 cd01234 PH_CADPS CADPS (Ca2+-d 98.7 1.4E-08 3.1E-13 90.6 4.7 98 20-127 3-113 (117)
94 cd00900 PH-like Pleckstrin hom 98.7 1.5E-07 3.3E-12 81.4 10.4 95 22-122 2-98 (99)
95 KOG4724 Predicted Rho GTPase-a 98.6 5.6E-08 1.2E-12 110.3 5.8 167 160-326 411-589 (741)
96 cd01220 PH_CDEP Chondrocyte-de 98.6 6.5E-07 1.4E-11 81.2 11.3 97 19-125 2-98 (99)
97 KOG1090 Predicted dual-specifi 98.5 3.6E-08 7.7E-13 114.9 2.4 96 15-124 1630-1731(1732)
98 cd01243 PH_MRCK MRCK (myotonic 98.5 1.6E-06 3.5E-11 80.2 11.9 104 20-123 3-118 (122)
99 cd01259 PH_Apbb1ip Apbb1ip (Am 98.4 4.8E-07 1E-11 82.5 7.3 101 21-124 2-108 (114)
100 cd01242 PH_ROK Rok (Rho- assoc 98.3 1E-05 2.2E-10 73.9 11.7 102 21-124 2-110 (112)
101 PF08101 DUF1708: Domain of un 98.2 1.1E-05 2.4E-10 90.4 11.8 146 181-328 9-169 (420)
102 PF14593 PH_3: PH domain; PDB: 98.2 1.1E-05 2.4E-10 73.7 9.5 92 15-126 9-101 (104)
103 KOG3640 Actin binding protein 98.1 4.5E-06 9.9E-11 98.1 6.5 104 17-126 988-1108(1116)
104 KOG2059 Ras GTPase-activating 98.0 1.3E-05 2.8E-10 92.1 7.7 115 15-144 561-683 (800)
105 KOG3751 Growth factor receptor 97.9 1.9E-05 4E-10 88.2 6.7 102 17-124 315-424 (622)
106 KOG0932 Guanine nucleotide exc 97.8 9.6E-06 2.1E-10 90.9 1.8 104 14-125 501-618 (774)
107 cd01218 PH_phafin2 Phafin2 Pl 97.7 0.00044 9.4E-09 63.4 10.8 98 18-126 3-100 (104)
108 PLN00188 enhanced disease resi 97.6 0.00028 6.1E-09 82.7 10.4 104 17-127 2-112 (719)
109 cd01239 PH_PKD Protein kinase 97.5 0.0003 6.5E-09 64.8 7.7 90 20-123 1-117 (117)
110 cd01261 PH_SOS Son of Sevenles 97.5 0.0011 2.4E-08 61.5 10.6 103 17-126 2-111 (112)
111 cd01258 PH_syntrophin Syntroph 97.4 0.00037 8.1E-09 64.1 7.2 89 33-122 15-107 (108)
112 PTZ00267 NIMA-related protein 97.3 0.00052 1.1E-08 78.8 7.9 101 16-125 374-477 (478)
113 KOG0521 Putative GTPase activa 97.3 0.00023 5.1E-09 85.7 5.2 98 18-127 273-371 (785)
114 KOG0248 Cytoplasmic protein Ma 96.8 0.00082 1.8E-08 77.3 3.2 96 17-125 247-342 (936)
115 cd01262 PH_PDK1 3-Phosphoinosi 96.7 0.0088 1.9E-07 53.1 8.4 87 19-124 1-88 (89)
116 KOG3543 Ca2+-dependent activat 96.5 0.00056 1.2E-08 77.7 -0.7 107 16-127 461-568 (1218)
117 KOG3723 PH domain protein Melt 96.4 0.0015 3.4E-08 73.8 2.5 95 20-127 736-839 (851)
118 cd01240 PH_beta-ARK Beta adren 96.3 0.0062 1.3E-07 55.6 4.7 95 18-126 2-100 (116)
119 KOG1453 Chimaerin and related 96.2 0.0026 5.6E-08 78.6 2.7 161 165-326 462-668 (918)
120 cd01222 PH_clg Clg (common-sit 96.2 0.074 1.6E-06 48.3 11.2 93 18-124 3-95 (97)
121 PF12814 Mcp5_PH: Meiotic cell 96.1 0.081 1.8E-06 49.9 11.9 99 24-125 14-122 (123)
122 PTZ00283 serine/threonine prot 96.1 0.017 3.7E-07 66.9 8.8 37 87-125 454-490 (496)
123 PF15408 PH_7: Pleckstrin homo 96.1 0.0023 4.9E-08 55.8 0.9 87 22-122 1-95 (104)
124 PLN02866 phospholipase D 96.1 0.043 9.4E-07 67.4 12.0 88 35-128 216-311 (1068)
125 KOG3531 Rho guanine nucleotide 95.9 0.0028 6.1E-08 74.6 1.3 93 22-124 927-1019(1036)
126 KOG1739 Serine/threonine prote 95.3 0.019 4.2E-07 64.2 4.9 96 17-125 22-117 (611)
127 cd01224 PH_Collybistin Collybi 95.2 0.29 6.3E-06 45.3 11.2 100 19-122 2-105 (109)
128 cd01228 PH_BCR-related BCR (br 94.7 0.15 3.3E-06 45.7 7.7 90 18-124 2-94 (96)
129 PF15406 PH_6: Pleckstrin homo 94.4 0.086 1.9E-06 48.3 5.7 69 40-121 42-110 (112)
130 KOG1449 Predicted Rho GTPase-a 93.8 0.013 2.8E-07 66.8 -1.0 175 163-376 207-390 (670)
131 KOG1449 Predicted Rho GTPase-a 93.8 0.014 3.1E-07 66.5 -0.7 74 294-376 1-74 (670)
132 cd01232 PH_TRIO Trio pleckstri 93.7 1.6 3.5E-05 40.8 12.8 87 38-125 25-113 (114)
133 cd01221 PH_ephexin Ephexin Ple 93.5 0.68 1.5E-05 43.9 10.1 80 36-121 26-119 (125)
134 KOG4424 Predicted Rho/Rac guan 93.4 0.1 2.2E-06 60.0 5.1 105 13-126 266-371 (623)
135 KOG0804 Cytoplasmic Zn-finger 92.9 0.76 1.6E-05 51.6 10.8 111 585-702 347-457 (493)
136 cd01226 PH_exo84 Exocyst compl 92.4 1.2 2.7E-05 40.6 9.8 54 65-124 45-98 (100)
137 PF15404 PH_4: Pleckstrin homo 92.4 0.59 1.3E-05 47.3 8.5 34 21-56 1-34 (185)
138 cd01231 PH_Lnk LNK-family Plec 91.9 0.91 2E-05 41.3 8.1 83 33-122 17-106 (107)
139 cd01225 PH_Cool_Pix Cool (clon 91.5 1.2 2.5E-05 41.4 8.5 82 37-124 28-109 (111)
140 COG1579 Zn-ribbon protein, pos 91.3 6 0.00013 41.7 14.7 70 582-651 10-82 (239)
141 PF10186 Atg14: UV radiation r 91.2 1.9 4.2E-05 46.0 11.6 123 579-702 24-155 (302)
142 PF12240 Angiomotin_C: Angiomo 89.6 2.4 5.3E-05 43.2 9.7 71 606-689 13-87 (205)
143 cd01227 PH_Dbs Dbs (DBL's big 89.2 4.2 9.1E-05 39.1 10.6 87 38-125 30-116 (133)
144 KOG1117 Rho- and Arf-GTPase ac 89.1 0.19 4.2E-06 59.9 1.7 95 15-125 83-178 (1186)
145 KOG0995 Centromere-associated 89.1 6.6 0.00014 45.8 13.8 103 580-699 219-327 (581)
146 KOG3549 Syntrophins (type gamm 88.8 0.74 1.6E-05 50.1 5.7 103 14-124 276-386 (505)
147 KOG2391 Vacuolar sorting prote 88.8 5.4 0.00012 43.6 12.1 99 587-687 212-324 (365)
148 KOG1738 Membrane-associated gu 88.1 0.074 1.6E-06 61.7 -2.4 58 19-80 562-620 (638)
149 cd01223 PH_Vav Vav pleckstrin 87.5 3.8 8.2E-05 38.5 8.8 87 37-126 20-113 (116)
150 KOG1737 Oxysterol-binding prot 87.5 0.41 8.8E-06 57.9 3.1 90 20-123 78-167 (799)
151 cd00089 HR1 Protein kinase C-r 86.8 1.8 3.8E-05 36.9 5.9 67 622-700 3-69 (72)
152 PF15405 PH_5: Pleckstrin homo 85.6 2.2 4.9E-05 41.0 6.6 35 89-123 100-134 (135)
153 PF09726 Macoilin: Transmembra 84.0 1.1E+02 0.0025 37.3 28.3 33 664-696 543-575 (697)
154 PF15619 Lebercilin: Ciliary p 82.9 9.5 0.00021 39.0 10.1 69 623-691 120-189 (194)
155 PF00038 Filament: Intermediat 81.1 12 0.00025 40.7 10.7 65 585-649 50-124 (312)
156 PRK10884 SH3 domain-containing 79.0 22 0.00048 36.7 11.3 35 667-701 140-174 (206)
157 PF00038 Filament: Intermediat 79.0 65 0.0014 34.8 15.7 113 581-693 74-193 (312)
158 KOG4047 Docking protein 1 (p62 78.6 1 2.3E-05 50.9 1.6 103 17-124 6-117 (429)
159 KOG0248 Cytoplasmic protein Ma 76.9 1.1 2.4E-05 52.6 1.2 89 20-124 260-348 (936)
160 KOG0517 Beta-spectrin [Cytoske 76.4 0.058 1.3E-06 68.4 -9.7 105 16-125 2296-2410(2473)
161 KOG3551 Syntrophins (type beta 76.1 2 4.3E-05 47.6 2.7 104 18-125 291-402 (506)
162 PF09726 Macoilin: Transmembra 75.9 2E+02 0.0044 35.2 21.0 10 581-590 417-426 (697)
163 KOG4807 F-actin binding protei 75.5 0.046 1E-06 59.7 -9.7 120 583-705 419-545 (593)
164 PF09755 DUF2046: Uncharacteri 75.2 88 0.0019 34.3 14.8 72 630-703 180-252 (310)
165 KOG0996 Structural maintenance 74.2 1.3E+02 0.0028 38.4 17.5 79 611-697 810-895 (1293)
166 PF15411 PH_10: Pleckstrin hom 74.1 43 0.00093 31.4 10.8 86 35-120 19-116 (116)
167 KOG2129 Uncharacterized conser 73.0 19 0.00042 40.4 9.3 69 584-652 210-316 (552)
168 PF07106 TBPIP: Tat binding pr 72.8 16 0.00036 36.1 8.2 66 621-694 72-137 (169)
169 PRK11637 AmiB activator; Provi 72.7 25 0.00055 40.1 10.8 36 670-705 100-135 (428)
170 PF00769 ERM: Ezrin/radixin/mo 72.6 1E+02 0.0022 32.8 14.5 112 586-701 2-117 (246)
171 KOG0977 Nuclear envelope prote 72.0 54 0.0012 38.7 13.1 97 579-695 110-230 (546)
172 cd01255 PH_TIAM TIAM Pleckstri 71.9 29 0.00062 33.8 9.0 105 19-126 28-156 (160)
173 KOG0161 Myosin class II heavy 71.8 68 0.0015 43.3 15.3 78 618-695 1010-1091(1930)
174 PF08317 Spc7: Spc7 kinetochor 71.6 59 0.0013 35.8 13.0 22 617-638 180-201 (325)
175 PF14197 Cep57_CLD_2: Centroso 71.2 21 0.00045 30.5 7.2 55 585-639 1-65 (69)
176 KOG3727 Mitogen inducible gene 70.3 0.57 1.2E-05 53.8 -3.1 87 34-124 372-458 (664)
177 TIGR03185 DNA_S_dndD DNA sulfu 69.6 63 0.0014 39.0 13.8 103 584-700 184-289 (650)
178 cd01248 PH_PLC Phospholipase C 69.2 41 0.00088 31.0 9.5 33 89-122 80-114 (115)
179 KOG4674 Uncharacterized conser 69.1 21 0.00046 47.2 9.8 90 610-699 794-884 (1822)
180 PF12240 Angiomotin_C: Angiomo 68.8 1.4E+02 0.003 30.8 13.7 116 582-697 17-153 (205)
181 PF10168 Nup88: Nuclear pore c 68.7 64 0.0014 39.6 13.5 109 583-701 552-667 (717)
182 COG1579 Zn-ribbon protein, pos 68.4 1.1E+02 0.0025 32.3 13.5 40 610-649 92-131 (239)
183 PF10186 Atg14: UV radiation r 68.3 1.3E+02 0.0028 31.9 14.6 44 584-627 65-108 (302)
184 TIGR01843 type_I_hlyD type I s 68.2 81 0.0018 35.2 13.6 25 673-697 210-234 (423)
185 PF12761 End3: Actin cytoskele 67.6 72 0.0016 32.7 11.4 115 560-700 74-194 (195)
186 PRK11637 AmiB activator; Provi 67.5 1.5E+02 0.0032 33.9 15.5 88 580-695 168-255 (428)
187 PF03148 Tektin: Tektin family 67.3 43 0.00093 37.9 11.0 108 587-701 231-352 (384)
188 PF07798 DUF1640: Protein of u 67.2 1.3E+02 0.0029 30.1 13.4 36 607-642 66-101 (177)
189 KOG1264 Phospholipase C [Lipid 67.2 6 0.00013 47.7 4.2 41 87-127 873-913 (1267)
190 COG5185 HEC1 Protein involved 65.0 99 0.0022 35.6 12.8 40 662-701 326-365 (622)
191 PF02185 HR1: Hr1 repeat; Int 64.6 19 0.00041 30.4 5.8 60 628-701 1-61 (70)
192 PF07888 CALCOCO1: Calcium bin 63.7 33 0.00072 40.3 9.3 51 594-648 141-191 (546)
193 PHA02562 46 endonuclease subun 63.7 1.5E+02 0.0033 34.7 15.2 32 665-696 298-329 (562)
194 PF08826 DMPK_coil: DMPK coile 63.5 39 0.00084 28.2 7.1 27 613-639 31-57 (61)
195 KOG4236 Serine/threonine prote 61.8 6.6 0.00014 45.6 3.1 95 15-124 409-523 (888)
196 PF05911 DUF869: Plant protein 61.4 61 0.0013 39.9 11.3 99 582-701 596-694 (769)
197 PF08614 ATG16: Autophagy prot 61.3 1E+02 0.0022 31.3 11.5 97 587-700 86-185 (194)
198 PF15619 Lebercilin: Ciliary p 61.2 1.5E+02 0.0032 30.4 12.5 115 582-697 12-149 (194)
199 PF06637 PV-1: PV-1 protein (P 60.5 1.1E+02 0.0025 34.2 12.0 60 580-639 302-374 (442)
200 PF05508 Ran-binding: RanGTP-b 60.1 60 0.0013 35.5 9.8 81 585-691 45-136 (302)
201 KOG4424 Predicted Rho/Rac guan 60.0 12 0.00026 43.8 4.8 84 34-125 510-596 (623)
202 TIGR01000 bacteriocin_acc bact 59.5 1.6E+02 0.0035 33.9 14.1 41 610-650 161-201 (457)
203 PLN02372 violaxanthin de-epoxi 58.1 31 0.00068 38.9 7.4 88 576-685 355-447 (455)
204 PF08317 Spc7: Spc7 kinetochor 57.8 2.7E+02 0.0058 30.7 14.8 16 668-683 211-226 (325)
205 PF13851 GAS: Growth-arrest sp 57.7 1.5E+02 0.0032 30.5 12.0 101 583-694 28-128 (201)
206 PRK00409 recombination and DNA 57.2 1.6E+02 0.0034 36.7 14.1 79 579-677 517-595 (782)
207 PRK11519 tyrosine kinase; Prov 57.2 88 0.0019 38.4 11.9 80 604-692 250-330 (719)
208 KOG4807 F-actin binding protei 56.5 2.7E+02 0.0059 31.4 14.0 83 34-125 32-115 (593)
209 PF12128 DUF3584: Protein of u 56.3 1.2E+02 0.0025 39.7 13.3 34 666-699 462-495 (1201)
210 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.2 1.9E+02 0.004 27.6 14.9 26 580-605 19-46 (132)
211 PRK09039 hypothetical protein; 55.9 1.6E+02 0.0035 32.8 12.7 18 583-600 47-64 (343)
212 PF02403 Seryl_tRNA_N: Seryl-t 55.1 1E+02 0.0022 28.0 9.3 67 624-699 32-100 (108)
213 PF15188 CCDC-167: Coiled-coil 54.1 75 0.0016 28.3 7.7 40 662-707 31-70 (85)
214 PF11083 Streptin-Immun: Lanti 53.7 61 0.0013 29.6 7.2 59 584-642 1-73 (99)
215 KOG0018 Structural maintenance 53.1 2.6E+02 0.0055 35.6 14.5 115 580-705 650-764 (1141)
216 PF02841 GBP_C: Guanylate-bind 52.6 2.4E+02 0.0051 30.6 13.2 32 611-642 226-257 (297)
217 PHA02562 46 endonuclease subun 52.4 1.8E+02 0.0039 34.1 13.3 38 675-715 257-294 (562)
218 TIGR02231 conserved hypothetic 52.3 52 0.0011 38.6 8.6 37 664-700 136-172 (525)
219 KOG0161 Myosin class II heavy 52.3 2.6E+02 0.0057 38.2 15.4 66 586-651 856-931 (1930)
220 PRK09039 hypothetical protein; 52.0 2.5E+02 0.0054 31.3 13.5 33 581-613 52-84 (343)
221 KOG0705 GTPase-activating prot 51.9 12 0.00025 43.8 3.0 35 89-125 446-480 (749)
222 PF03962 Mnd1: Mnd1 family; I 51.8 84 0.0018 32.0 8.9 28 666-693 103-130 (188)
223 PF09304 Cortex-I_coil: Cortex 51.8 1.1E+02 0.0024 28.4 8.7 15 585-599 5-19 (107)
224 KOG1656 Protein involved in gl 51.4 2.7E+02 0.0058 28.8 12.1 42 558-608 6-54 (221)
225 KOG1853 LIS1-interacting prote 50.8 1.9E+02 0.0041 30.8 11.2 75 624-698 94-182 (333)
226 KOG0993 Rab5 GTPase effector R 50.6 68 0.0015 36.2 8.4 104 612-730 105-215 (542)
227 COG1196 Smc Chromosome segrega 50.1 2.8E+02 0.0061 36.1 15.3 6 64-69 78-83 (1163)
228 COG2433 Uncharacterized conser 49.4 1E+02 0.0022 36.8 9.9 103 581-683 428-541 (652)
229 TIGR01837 PHA_granule_1 poly(h 49.4 72 0.0016 30.0 7.4 32 603-634 23-54 (118)
230 PF11559 ADIP: Afadin- and alp 49.2 2.5E+02 0.0055 27.1 11.9 21 677-697 130-150 (151)
231 PF08232 Striatin: Striatin fa 48.9 54 0.0012 31.5 6.7 52 587-649 23-74 (134)
232 PF06637 PV-1: PV-1 protein (P 48.8 3.5E+02 0.0077 30.6 13.4 95 586-703 282-379 (442)
233 KOG0996 Structural maintenance 48.2 2.5E+02 0.0054 36.1 13.4 70 584-654 365-438 (1293)
234 PF04156 IncA: IncA protein; 48.1 2.9E+02 0.0064 27.5 15.5 38 582-619 81-118 (191)
235 PF09730 BicD: Microtubule-ass 48.0 1.9E+02 0.0042 35.4 12.4 26 669-694 93-118 (717)
236 PRK04863 mukB cell division pr 48.0 1.6E+02 0.0034 39.4 12.5 62 623-691 515-576 (1486)
237 PF03938 OmpH: Outer membrane 47.8 2E+02 0.0043 27.7 10.7 76 605-702 34-109 (158)
238 PF06248 Zw10: Centromere/kine 46.9 2.5E+02 0.0055 33.5 13.4 104 579-699 11-115 (593)
239 smart00787 Spc7 Spc7 kinetocho 46.9 3.8E+02 0.0083 29.5 13.7 47 580-634 146-192 (312)
240 KOG2077 JNK/SAPK-associated pr 46.5 50 0.0011 38.7 6.8 54 586-639 319-375 (832)
241 KOG0977 Nuclear envelope prote 46.4 1.8E+02 0.004 34.4 11.5 79 620-701 105-190 (546)
242 KOG4674 Uncharacterized conser 46.0 1.9E+02 0.0041 39.0 12.5 113 581-699 1256-1379(1822)
243 KOG0976 Rho/Rac1-interacting s 45.6 2.1E+02 0.0045 35.3 11.7 56 585-644 326-381 (1265)
244 PRK10884 SH3 domain-containing 45.4 2.5E+02 0.0054 29.1 11.3 28 671-698 137-164 (206)
245 KOG4460 Nuclear pore complex, 45.3 2.8E+02 0.006 32.8 12.4 123 581-713 573-702 (741)
246 COG4026 Uncharacterized protei 45.1 3.4E+02 0.0074 28.5 11.8 29 669-697 173-201 (290)
247 PF07798 DUF1640: Protein of u 45.0 1.5E+02 0.0032 29.7 9.4 99 583-690 52-155 (177)
248 PF14362 DUF4407: Domain of un 44.7 4.3E+02 0.0094 28.5 15.5 84 609-697 130-213 (301)
249 KOG3520 Predicted guanine nucl 44.7 35 0.00077 43.2 5.8 45 85-129 682-726 (1167)
250 COG3937 Uncharacterized conser 44.6 54 0.0012 30.4 5.5 23 675-697 85-107 (108)
251 KOG4643 Uncharacterized coiled 44.2 5.7E+02 0.012 32.6 15.4 119 577-695 59-199 (1195)
252 KOG3433 Protein involved in me 43.8 3.7E+02 0.008 27.4 11.6 65 583-650 75-142 (203)
253 PRK03918 chromosome segregatio 43.8 4.2E+02 0.0091 33.0 15.2 10 313-322 16-25 (880)
254 PF12128 DUF3584: Protein of u 43.8 3.8E+02 0.0082 35.1 15.1 42 558-601 582-623 (1201)
255 PF08581 Tup_N: Tup N-terminal 43.7 1.2E+02 0.0027 26.5 7.4 52 588-639 24-75 (79)
256 TIGR02168 SMC_prok_B chromosom 43.7 4.2E+02 0.0091 33.8 15.5 26 672-697 914-939 (1179)
257 PLN02678 seryl-tRNA synthetase 43.3 74 0.0016 36.8 7.8 36 666-701 71-106 (448)
258 smart00787 Spc7 Spc7 kinetocho 43.1 4.9E+02 0.011 28.7 14.2 14 667-680 247-260 (312)
259 COG1842 PspA Phage shock prote 42.5 4.3E+02 0.0093 27.8 13.7 21 616-636 54-74 (225)
260 KOG1937 Uncharacterized conser 42.5 3.6E+02 0.0079 31.1 12.6 129 572-701 283-424 (521)
261 TIGR03007 pepcterm_ChnLen poly 42.4 6E+02 0.013 29.4 15.6 34 668-701 312-345 (498)
262 PF14992 TMCO5: TMCO5 family 42.4 1.5E+02 0.0032 32.2 9.2 31 661-691 111-141 (280)
263 PF08458 PH_2: Plant pleckstri 42.1 1.9E+02 0.0041 27.1 8.7 38 87-127 69-106 (110)
264 PF09486 HrpB7: Bacterial type 42.0 3.6E+02 0.0079 26.8 12.6 100 600-700 12-113 (158)
265 PF06705 SF-assemblin: SF-asse 42.0 4.2E+02 0.0091 27.8 12.8 43 603-645 45-87 (247)
266 TIGR03185 DNA_S_dndD DNA sulfu 41.9 3.3E+02 0.0071 33.0 13.4 99 582-699 421-521 (650)
267 PF09787 Golgin_A5: Golgin sub 41.9 4.2E+02 0.009 31.2 13.9 103 599-705 210-313 (511)
268 PF14282 FlxA: FlxA-like prote 41.5 1.6E+02 0.0035 27.0 8.4 63 623-705 21-83 (106)
269 PRK05431 seryl-tRNA synthetase 41.4 1.8E+02 0.0039 33.4 10.6 35 667-701 67-101 (425)
270 PRK02224 chromosome segregatio 41.4 3.9E+02 0.0084 33.4 14.4 14 107-120 108-121 (880)
271 KOG0612 Rho-associated, coiled 40.5 2E+02 0.0043 37.1 11.1 30 623-652 751-780 (1317)
272 PF10211 Ax_dynein_light: Axon 40.5 4.1E+02 0.0089 27.0 13.6 67 615-697 121-187 (189)
273 PRK10929 putative mechanosensi 40.2 5.9E+02 0.013 33.1 15.5 109 580-692 171-284 (1109)
274 KOG0971 Microtubule-associated 40.2 3.9E+02 0.0085 33.5 13.0 135 584-737 426-579 (1243)
275 PRK12704 phosphodiesterase; Pr 40.1 5.6E+02 0.012 30.3 14.5 32 674-705 118-149 (520)
276 TIGR02169 SMC_prok_A chromosom 40.0 5.2E+02 0.011 33.1 15.5 17 181-197 116-132 (1164)
277 TIGR01010 BexC_CtrB_KpsE polys 39.9 2.9E+02 0.0063 30.6 11.8 21 619-639 168-188 (362)
278 PRK13182 racA polar chromosome 39.6 1.5E+02 0.0033 29.9 8.4 28 612-639 83-110 (175)
279 TIGR03319 YmdA_YtgF conserved 39.5 5.5E+02 0.012 30.4 14.3 21 617-637 58-78 (514)
280 PRK09841 cryptic autophosphory 39.5 1.8E+02 0.0039 35.8 10.8 76 608-692 254-330 (726)
281 PF12325 TMF_TATA_bd: TATA ele 39.3 3.4E+02 0.0074 25.7 11.0 46 584-637 39-84 (120)
282 PRK02224 chromosome segregatio 39.2 3.6E+02 0.0078 33.7 13.6 30 609-638 309-338 (880)
283 cd07596 BAR_SNX The Bin/Amphip 39.0 2.5E+02 0.0054 28.0 10.2 39 663-701 142-180 (218)
284 KOG3523 Putative guanine nucle 38.7 55 0.0012 38.7 5.8 35 87-121 554-591 (695)
285 PF07106 TBPIP: Tat binding pr 38.5 1.2E+02 0.0026 30.0 7.6 57 583-639 73-134 (169)
286 TIGR02169 SMC_prok_A chromosom 38.4 5.7E+02 0.012 32.7 15.5 19 201-219 109-127 (1164)
287 PRK13729 conjugal transfer pil 38.4 89 0.0019 36.2 7.3 59 572-637 56-120 (475)
288 TIGR01843 type_I_hlyD type I s 38.3 4.6E+02 0.01 29.1 13.2 28 670-697 243-270 (423)
289 KOG4673 Transcription factor T 38.1 4E+02 0.0086 32.4 12.4 113 554-702 654-768 (961)
290 KOG1060 Vesicle coat complex A 37.9 9E+02 0.02 30.2 17.7 133 164-300 321-478 (968)
291 PF05700 BCAS2: Breast carcino 37.8 4.8E+02 0.011 27.1 16.2 37 664-700 180-216 (221)
292 PF03962 Mnd1: Mnd1 family; I 37.8 1E+02 0.0022 31.4 7.0 20 619-638 108-127 (188)
293 PF09744 Jnk-SapK_ap_N: JNK_SA 37.7 1.5E+02 0.0033 29.4 7.9 66 625-696 54-119 (158)
294 TIGR00606 rad50 rad50. This fa 37.7 5.6E+02 0.012 33.8 15.4 39 663-701 967-1005(1311)
295 TIGR01005 eps_transp_fam exopo 37.6 7.9E+02 0.017 30.2 16.0 42 664-705 286-341 (754)
296 TIGR03752 conj_TIGR03752 integ 37.6 2.1E+02 0.0045 33.3 10.0 30 669-698 112-141 (472)
297 PRK03918 chromosome segregatio 37.6 5.1E+02 0.011 32.3 14.6 25 624-648 348-372 (880)
298 PF05557 MAD: Mitotic checkpoi 37.4 35 0.00076 41.7 4.3 79 620-698 453-535 (722)
299 COG3750 Uncharacterized protei 37.3 77 0.0017 27.7 5.0 40 583-622 22-68 (85)
300 PF10458 Val_tRNA-synt_C: Valy 37.0 1.1E+02 0.0023 25.6 5.9 65 626-693 2-66 (66)
301 PF06785 UPF0242: Uncharacteri 36.8 5.3E+02 0.011 28.7 12.3 85 599-700 137-221 (401)
302 PF04111 APG6: Autophagy prote 36.7 4.4E+02 0.0095 29.0 12.2 24 613-636 70-93 (314)
303 cd00890 Prefoldin Prefoldin is 36.7 2.8E+02 0.0061 25.5 9.5 39 613-651 5-43 (129)
304 PRK11281 hypothetical protein; 36.6 4.2E+02 0.009 34.4 13.5 41 599-639 212-252 (1113)
305 PLN02320 seryl-tRNA synthetase 36.6 2E+02 0.0043 33.9 9.9 36 666-701 130-165 (502)
306 KOG4593 Mitotic checkpoint pro 36.5 8.1E+02 0.018 29.9 14.8 115 582-696 248-393 (716)
307 PF07246 Phlebovirus_NSM: Phle 36.5 4.1E+02 0.009 28.6 11.3 73 613-706 167-242 (264)
308 PRK04863 mukB cell division pr 36.4 6.8E+02 0.015 33.6 15.7 25 670-694 380-404 (1486)
309 PF07820 TraC: TraC-like prote 36.3 1.2E+02 0.0025 27.5 6.2 30 623-652 4-39 (92)
310 PF13094 CENP-Q: CENP-Q, a CEN 36.1 4.2E+02 0.0091 25.8 11.4 73 578-650 16-92 (160)
311 PF11180 DUF2968: Protein of u 35.7 4.6E+02 0.0099 26.9 11.0 76 578-653 101-186 (192)
312 KOG0837 Transcriptional activa 35.7 2.5E+02 0.0053 30.2 9.4 57 614-701 213-269 (279)
313 PRK14127 cell division protein 35.7 61 0.0013 30.2 4.5 31 669-699 40-70 (109)
314 PF05565 Sipho_Gp157: Siphovir 35.6 2.5E+02 0.0055 27.7 9.3 66 578-643 22-90 (162)
315 PF06005 DUF904: Protein of un 35.5 1.2E+02 0.0026 26.1 6.0 28 666-693 11-38 (72)
316 PF04714 BCL_N: BCL7, N-termin 35.1 17 0.00038 29.0 0.7 21 34-54 27-47 (52)
317 COG1196 Smc Chromosome segrega 34.9 6.7E+02 0.015 32.7 15.3 63 583-645 296-368 (1163)
318 PF10146 zf-C4H2: Zinc finger- 34.7 4.9E+02 0.011 27.4 11.6 66 623-698 41-107 (230)
319 TIGR02168 SMC_prok_B chromosom 34.6 7E+02 0.015 31.8 15.5 19 200-218 110-128 (1179)
320 PF05667 DUF812: Protein of un 34.6 4.8E+02 0.01 31.4 12.9 24 667-690 441-464 (594)
321 PF13514 AAA_27: AAA domain 34.4 5.7E+02 0.012 33.1 14.6 110 582-697 154-273 (1111)
322 TIGR03007 pepcterm_ChnLen poly 34.1 3.8E+02 0.0083 31.0 12.0 85 604-698 140-229 (498)
323 PF15397 DUF4618: Domain of un 34.0 3.7E+02 0.0079 28.9 10.6 28 673-700 200-227 (258)
324 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.0 3.4E+02 0.0073 25.8 9.6 66 583-648 60-125 (132)
325 PF12761 End3: Actin cytoskele 33.8 1.6E+02 0.0035 30.2 7.6 28 674-701 161-188 (195)
326 PF06005 DUF904: Protein of un 33.4 2.8E+02 0.0061 23.9 7.9 56 593-648 8-67 (72)
327 PF13514 AAA_27: AAA domain 33.1 8.6E+02 0.019 31.5 15.9 131 571-702 231-382 (1111)
328 PF05483 SCP-1: Synaptonemal c 33.1 4.7E+02 0.01 31.9 12.0 78 626-703 673-769 (786)
329 PRK11239 hypothetical protein; 33.0 66 0.0014 33.4 4.7 28 669-696 186-213 (215)
330 PF08172 CASP_C: CASP C termin 33.0 2.5E+02 0.0053 30.0 9.2 26 625-650 3-28 (248)
331 KOG4270 GTPase-activator prote 32.9 35 0.00075 40.5 3.1 154 157-324 31-195 (577)
332 TIGR00414 serS seryl-tRNA synt 32.9 3E+02 0.0065 31.5 10.6 34 668-701 71-104 (418)
333 PF12777 MT: Microtubule-bindi 32.8 93 0.002 34.6 6.3 8 735-742 319-326 (344)
334 KOG2070 Guanine nucleotide exc 32.6 62 0.0013 37.4 4.8 59 598-656 597-658 (661)
335 PRK11546 zraP zinc resistance 32.3 1.5E+02 0.0033 29.0 6.8 56 589-649 61-118 (143)
336 COG2433 Uncharacterized conser 32.2 5.5E+02 0.012 30.9 12.4 87 582-700 422-508 (652)
337 COG0419 SbcC ATPase involved i 32.2 3.6E+02 0.0077 34.1 12.0 50 664-713 408-465 (908)
338 KOG1029 Endocytic adaptor prot 32.1 8.7E+02 0.019 30.2 14.0 35 667-701 438-472 (1118)
339 cd00632 Prefoldin_beta Prefold 31.9 3.5E+02 0.0075 24.6 8.9 79 623-701 15-98 (105)
340 KOG1899 LAR transmembrane tyro 31.9 4.1E+02 0.0088 32.0 11.1 20 667-686 175-194 (861)
341 PF07957 DUF3294: Protein of u 31.7 1.1E+02 0.0023 32.0 5.9 34 625-658 74-109 (216)
342 TIGR00606 rad50 rad50. This fa 31.7 6.4E+02 0.014 33.3 14.5 120 571-697 781-919 (1311)
343 PF10073 DUF2312: Uncharacteri 31.6 1.6E+02 0.0035 25.6 6.1 37 583-619 12-55 (74)
344 PRK15178 Vi polysaccharide exp 31.4 8.3E+02 0.018 28.3 13.6 72 581-652 222-310 (434)
345 PF06698 DUF1192: Protein of u 31.3 1.3E+02 0.0029 25.0 5.3 33 618-650 25-57 (59)
346 TIGR01069 mutS2 MutS2 family p 31.2 6E+02 0.013 31.6 13.4 66 579-650 512-577 (771)
347 KOG0933 Structural maintenance 31.1 6.2E+02 0.013 32.3 12.9 31 668-698 845-875 (1174)
348 KOG4403 Cell surface glycoprot 31.1 7.7E+02 0.017 28.4 12.7 109 580-700 250-367 (575)
349 PF11932 DUF3450: Protein of u 30.8 2.1E+02 0.0045 30.2 8.3 37 618-654 74-110 (251)
350 KOG0642 Cell-cycle nuclear pro 30.6 69 0.0015 37.5 4.9 97 581-688 33-129 (577)
351 PF10481 CENP-F_N: Cenp-F N-te 30.5 2.1E+02 0.0045 30.9 7.9 86 611-697 26-112 (307)
352 PF07439 DUF1515: Protein of u 30.4 3.2E+02 0.007 25.5 8.1 63 619-694 6-68 (112)
353 KOG2685 Cystoskeletal protein 30.2 8.9E+02 0.019 27.8 14.0 110 581-698 252-376 (421)
354 PF07888 CALCOCO1: Calcium bin 30.2 1E+03 0.022 28.4 15.4 39 581-619 142-180 (546)
355 PRK10929 putative mechanosensi 29.9 2.8E+02 0.0061 35.9 10.4 22 665-686 172-193 (1109)
356 PF03148 Tektin: Tektin family 29.7 4.8E+02 0.01 29.5 11.4 88 613-700 49-150 (384)
357 PF08687 ASD2: Apx/Shroom doma 29.2 6.4E+02 0.014 27.2 11.5 97 594-693 108-261 (264)
358 PF12709 Kinetocho_Slk19: Cent 28.9 1.4E+02 0.003 26.8 5.4 34 610-643 45-78 (87)
359 KOG4095 Uncharacterized conser 28.8 21 0.00046 34.7 0.4 25 34-58 28-52 (165)
360 TIGR02338 gimC_beta prefoldin, 28.7 4.6E+02 0.0099 24.0 9.2 40 662-701 63-102 (110)
361 KOG2072 Translation initiation 28.6 8.5E+02 0.018 30.5 13.3 62 623-703 672-733 (988)
362 PF04880 NUDE_C: NUDE protein, 28.5 90 0.0019 31.3 4.7 27 670-696 21-47 (166)
363 PRK13729 conjugal transfer pil 28.0 1.4E+02 0.0029 34.8 6.6 51 620-694 75-125 (475)
364 TIGR01005 eps_transp_fam exopo 27.9 7.5E+02 0.016 30.4 13.6 60 580-643 286-349 (754)
365 KOG3915 Transcription regulato 27.9 2.7E+02 0.0057 32.2 8.6 66 588-653 502-567 (641)
366 PF07321 YscO: Type III secret 27.5 6.1E+02 0.013 25.0 13.9 71 610-701 32-102 (152)
367 KOG0250 DNA repair protein RAD 27.3 6.4E+02 0.014 32.3 12.4 61 582-642 661-724 (1074)
368 KOG0993 Rab5 GTPase effector R 27.2 5.3E+02 0.011 29.5 10.6 51 626-693 439-489 (542)
369 PF01920 Prefoldin_2: Prefoldi 27.0 4.2E+02 0.0092 23.4 8.6 84 617-703 8-99 (106)
370 PF10267 Tmemb_cc2: Predicted 26.9 9.9E+02 0.022 27.3 16.6 70 622-704 238-307 (395)
371 KOG0612 Rho-associated, coiled 26.8 8.7E+02 0.019 31.7 13.4 40 115-182 135-174 (1317)
372 KOG1760 Molecular chaperone Pr 26.7 4.8E+02 0.01 25.0 8.7 79 618-699 27-121 (131)
373 KOG3156 Uncharacterized membra 26.7 1.2E+02 0.0027 31.4 5.4 59 579-638 124-191 (220)
374 TIGR02473 flagell_FliJ flagell 26.4 5.4E+02 0.012 24.0 10.2 72 630-701 29-103 (141)
375 PRK11239 hypothetical protein; 26.3 89 0.0019 32.4 4.3 29 673-701 183-211 (215)
376 PRK13694 hypothetical protein; 26.2 1.1E+02 0.0025 27.0 4.3 37 583-619 20-63 (83)
377 PF02185 HR1: Hr1 repeat; Int 26.1 3.4E+02 0.0075 22.7 7.3 51 591-641 3-60 (70)
378 PRK11020 hypothetical protein; 26.0 2.5E+02 0.0055 26.3 6.7 62 625-701 2-63 (118)
379 PF06698 DUF1192: Protein of u 26.0 1E+02 0.0022 25.6 3.8 26 668-693 23-48 (59)
380 PF14282 FlxA: FlxA-like prote 25.9 4.9E+02 0.011 23.9 8.8 51 581-638 18-68 (106)
381 PF13166 AAA_13: AAA domain 25.8 1.2E+03 0.025 28.4 14.6 66 623-692 324-389 (712)
382 KOG1029 Endocytic adaptor prot 25.6 9.4E+02 0.02 29.9 12.8 20 620-639 436-455 (1118)
383 PF05529 Bap31: B-cell recepto 25.3 5.1E+02 0.011 26.0 9.7 29 669-697 157-185 (192)
384 PF14389 Lzipper-MIP1: Leucine 25.0 1.2E+02 0.0026 27.1 4.4 55 583-637 9-77 (88)
385 smart00338 BRLZ basic region l 24.9 2.4E+02 0.0052 23.2 6.0 7 628-634 26-32 (65)
386 TIGR03755 conj_TIGR03755 integ 24.9 1.3E+02 0.0028 34.4 5.7 61 629-689 308-373 (418)
387 PF04880 NUDE_C: NUDE protein, 24.9 78 0.0017 31.7 3.5 22 592-613 3-24 (166)
388 KOG0250 DNA repair protein RAD 24.8 8.6E+02 0.019 31.3 12.9 30 610-639 361-390 (1074)
389 PF15070 GOLGA2L5: Putative go 24.8 5.4E+02 0.012 31.2 11.1 56 582-641 87-142 (617)
390 KOG3119 Basic region leucine z 24.7 6.9E+02 0.015 26.8 11.0 37 603-639 201-247 (269)
391 KOG0976 Rho/Rac1-interacting s 24.2 8.9E+02 0.019 30.2 12.3 60 579-638 45-109 (1265)
392 PF08647 BRE1: BRE1 E3 ubiquit 24.1 5.3E+02 0.011 23.2 9.1 68 582-649 3-80 (96)
393 cd07605 I-BAR_IMD Inverse (I)- 24.1 4.3E+02 0.0093 27.7 9.0 102 613-735 115-221 (223)
394 KOG0249 LAR-interacting protei 24.1 8E+02 0.017 30.2 11.9 20 672-691 215-234 (916)
395 PF10805 DUF2730: Protein of u 24.1 5.6E+02 0.012 23.5 9.1 73 607-697 22-96 (106)
396 PF05266 DUF724: Protein of un 24.0 7.8E+02 0.017 25.1 12.3 28 669-696 155-182 (190)
397 PF02841 GBP_C: Guanylate-bind 23.6 6E+02 0.013 27.5 10.5 20 232-251 8-27 (297)
398 KOG0241 Kinesin-like protein [ 23.5 1.7E+02 0.0038 36.6 6.5 94 537-639 510-613 (1714)
399 PF04156 IncA: IncA protein; 23.2 7.5E+02 0.016 24.6 13.8 22 620-641 101-122 (191)
400 PF14817 HAUS5: HAUS augmin-li 23.0 1.9E+02 0.0041 35.0 6.9 41 599-639 52-97 (632)
401 PF11285 DUF3086: Protein of u 22.8 1.1E+02 0.0024 32.6 4.3 19 617-635 7-25 (283)
402 PRK13848 conjugal transfer pro 22.7 2.6E+02 0.0057 25.3 5.9 29 624-652 6-40 (98)
403 KOG4348 Adaptor protein CMS/SE 22.7 1.8E+02 0.0039 33.3 6.1 22 628-649 594-615 (627)
404 PF05837 CENP-H: Centromere pr 22.5 6.1E+02 0.013 23.3 8.9 70 583-652 4-82 (106)
405 PF10234 Cluap1: Clusterin-ass 22.2 3.3E+02 0.0071 29.4 7.8 106 624-732 127-240 (267)
406 PF14915 CCDC144C: CCDC144C pr 22.0 1.1E+03 0.023 26.0 12.0 79 622-700 85-171 (305)
407 PF09727 CortBP2: Cortactin-bi 21.7 3.9E+02 0.0085 27.4 7.9 47 626-692 139-185 (192)
408 KOG0981 DNA topoisomerase I [R 21.6 3.5E+02 0.0075 32.3 8.2 56 674-742 677-732 (759)
409 PTZ00464 SNF-7-like protein; P 21.6 9.2E+02 0.02 25.0 11.2 22 579-600 15-36 (211)
410 PF10359 Fmp27_WPPW: RNA pol I 21.3 3.9E+02 0.0083 31.2 8.9 65 619-705 168-232 (475)
411 COG4717 Uncharacterized conser 21.3 9.3E+02 0.02 30.3 11.9 45 584-630 184-228 (984)
412 PF04111 APG6: Autophagy prote 21.1 6.7E+02 0.014 27.6 10.2 17 670-686 75-91 (314)
413 TIGR01069 mutS2 MutS2 family p 21.1 1.7E+03 0.036 27.8 14.7 18 108-125 38-55 (771)
414 PF06705 SF-assemblin: SF-asse 21.1 9.7E+02 0.021 25.1 13.7 76 613-701 113-189 (247)
415 PF15030 DUF4527: Protein of u 21.1 2.1E+02 0.0045 30.3 5.8 82 616-701 11-92 (277)
416 PRK11281 hypothetical protein; 21.1 1.1E+03 0.023 30.9 13.2 26 664-689 190-215 (1113)
417 PF05529 Bap31: B-cell recepto 21.1 7.5E+02 0.016 24.8 10.0 32 663-694 158-189 (192)
418 PF10828 DUF2570: Protein of u 21.0 4.9E+02 0.011 24.0 7.8 30 584-613 27-56 (110)
419 PF12017 Tnp_P_element: Transp 20.9 2.8E+02 0.006 29.4 6.9 37 615-651 19-55 (236)
420 TIGR00255 conserved hypothetic 20.6 5.5E+02 0.012 28.1 9.3 97 589-698 136-238 (291)
421 PRK10361 DNA recombination pro 20.6 1.4E+03 0.03 26.8 15.6 40 594-633 72-111 (475)
422 PF14257 DUF4349: Domain of un 20.6 3.6E+02 0.0077 28.5 7.8 36 672-707 161-196 (262)
423 PF05597 Phasin: Poly(hydroxya 20.4 6.3E+02 0.014 24.4 8.6 19 674-692 110-128 (132)
424 PF05667 DUF812: Protein of un 20.3 1.3E+03 0.027 28.0 13.0 32 580-611 326-357 (594)
425 PF11853 DUF3373: Protein of u 20.1 1.2E+02 0.0027 35.3 4.4 29 670-698 28-56 (489)
426 PF03961 DUF342: Protein of un 20.0 5E+02 0.011 29.9 9.4 36 664-699 373-408 (451)
No 1
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-46 Score=421.59 Aligned_cols=623 Identities=31% Similarity=0.343 Sum_probs=506.5
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhhcccc-cccccccccccCCCCccccCc-cccccCCCCCCCcccccchHHHh
Q 004616 97 GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA-ALVMGHNGIFRNDTNDTIEGS-FHQWRDKRPVKSLVVGRPILLAL 174 (742)
Q Consensus 97 ~~~grty~fqAdSeeE~~eWi~AL~~ai~~aP~~-a~~~g~~~~f~~~~~~~~e~s-~~~~k~k~~~~~~vFG~pL~~ll 174 (742)
..+++.+.-.+++-+++.+|-.+++.+..+||.. +.+++|+|+|+.+...+..+. ...+++..++.+.++|+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 4457888999999999999999999999999998 889999999999998876653 66677888999999999999999
Q ss_pred hhCCCCcHHHHHHHHHHHhcCCCcCC---ccccCC-CHHHHHHHHHHhh-cCCcCC--CCCCCcc--chhhhHH--HHhh
Q 004616 175 EDIDGGPSFLEKALRFLEKFGTKVEG---ILRQAA-DVEEVDRRVQEYE-QGKTEF--SADEDAH--VIGDCVK--HVLR 243 (742)
Q Consensus 175 ~~~~~VP~il~~~i~~L~~~Gl~~EG---IFR~sg-~~~~v~~L~~~ld-~g~~~~--~~~~D~h--~vA~lLK--~fLR 243 (742)
+..++-|.+..+.+.+|..+|+..|| |-|.++ ++..|+.-...|+ .|...+ ....+|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 99999999999999999999999999 999999 7888887777776 565443 3345899 5888888 8899
Q ss_pred hCCCCCCChhhHHHHHHH--HhcCCHHHHHHHHHHHHhcc--CChhHHH----HHHHHHHHHhhccccccccCCCcc-ch
Q 004616 244 ELPSSPVPASCCTALLEA--YKIDRKEARISAMRSAILET--FPEPNRR----LLQRILRMMHTISSHAHENRMTPS-AV 314 (742)
Q Consensus 244 eLPePLlp~~l~~~~l~~--~~~~~~~~ri~~l~~lIl~~--LP~~n~~----lL~~Ll~~L~~V~~~s~~NkMta~-NL 314 (742)
.++..+.|..+|..+..+ +...-.+.|+..++..|++. .|.+|+. ++.+|+.++..+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999988887777 55555678999999999888 8999887 888999999999999999999999 99
Q ss_pred hhhhcc-cccC-CCCCCCCccccc-cCCCCCchHH----HHHHHHHHH-HHHHHHHHHHhhcccccccccccccCCCCCC
Q 004616 315 AACMAP-LLLR-PLLAGECELEDD-FDMNGDNSAQ----LLAAANAAN-NAQAIIATLLEEYENIFDDESLHRCSISADS 386 (742)
Q Consensus 315 AivfaP-~Llr-~~~~~~~~~ed~-~~~~g~~~~~----~~~~~~~~~-~~~~iVe~LIen~~~IF~~~~~~~~s~s~~~ 386 (742)
+.|++| .|++ |-..+.|.++.. |+..|+...+ +..+...++ .++.+|-.+++.|..||.+..+..+..+-.+
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 5777 666888988876 9999999999 777777777 5999999999999999999987766655554
Q ss_pred CCCCCC--CCCCCcccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 004616 387 HVDNSG--SEDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNA 464 (742)
Q Consensus 387 s~~~s~--~e~ssd~~~~~~~d~~~~s~e~e~~~~~d~~~e~~~s~~~s~~~~~~~~d~~~~~~~~~~~s~~~~~~~~~~ 464 (742)
.+..+. +.++.+.+.+......-.+-.+.++-....++.........+.+....+|.+.|.++...+++.+++..-..
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~~~a~~~tee~~~~Sp~~s~~~~~~~~~d~d~ds~p~~Sp 685 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNAAEACSTTEEVFNFSPRDSSPYCNSNLQDSDEDSPPSYSP 685 (1100)
T ss_pred ccccccccCCCchhccccccccccccchhhccccccCCccccccccCchhhcCCChhhcccccCCCccccCCCCCCCcCC
Confidence 444222 133333333332222222222322223333333334566666777788899999999999999998865554
Q ss_pred ccccCCCCCCCCCCCCCCchhHHhhhccccCCCCccccccccCCCCCCCCccccccccccCCCCCCCC-CCCCCcccccc
Q 004616 465 SAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLS-VSGLESSAEKP 543 (742)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 543 (742)
+.....++..|...|.+.... .....+.....+.+.+...|+....|+.|.+ ++.....+.|+
T Consensus 686 ~~e~t~lsst~k~~S~~~~d~----------------g~~~~~i~~~~~n~~~~r~i~~Vs~pi~Pk~vs~dvt~~a~kp 749 (1100)
T KOG4271|consen 686 FREDTSLSSTSKDHSKLSMDL----------------GGNDVGISFTMNNFESKRNINKVSPPIKPKAVSPDVTFDATKP 749 (1100)
T ss_pred ccCcccccCCccccccccccc----------------cCCCCCcccccchhHhhhhcccCCCCCCCCcCCCCcccccccC
Confidence 555556655554333222211 2223355566677788888888888888776 45556777787
Q ss_pred -CCCCCCCCCCCCcccccccCcccCCCCcccCCCCchHHHHHHH-----hhhhhHHHHHHHHHHhhhhhhhhHhHHHHHH
Q 004616 544 -VGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQR-----LEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (742)
Q Consensus 544 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (742)
.+.+..+...++|...|||+.+.|++.+|++|.+++|++.||| ++.+|.|+|+||+||+|+|+.+||++++|++
T Consensus 750 ~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~~~~~QaSder~nk 829 (1100)
T KOG4271|consen 750 DLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKNNNKLQASDERRNK 829 (1100)
T ss_pred cccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhcchhhhhhhhhccc
Confidence 4456667778899999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 618 ALHERRLALE-QDVSRLQEQLQAERDLRAALEVG--LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (742)
Q Consensus 618 ~~~~~r~~Le-~~V~~L~~~L~~e~~~~~~Le~~--l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (742)
+.+++|.+|| +++.+||.++|.|+..|.+...+ +....|+. ...-.|.++++-|.+++..|.+ ++|.+++.+...
T Consensus 830 s~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~-d~~~~~sktskkl~k~k~a~hD-a~lktk~~n~pa 907 (1100)
T KOG4271|consen 830 SDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGS-DLSAGPSKTSKKLEKNKLAKHD-AKLKTKTKNTPA 907 (1100)
T ss_pred ccccccccccHhhhhhhhhccccchhHHHHHHhccCcccccccc-ccccCcccchHHHhhhcccccc-ccccccccCCcc
Confidence 9999999999 99999999999999999999987 55555533 3466899999999999999999 999999999999
Q ss_pred HHH--HHHhhhcCCcccccccccccccccccccchhh-hcchhhcc
Q 004616 695 QLN--QQRQHHYGSLSDACDRYQNVQNHNSQHNICIS-FYMWLAWG 737 (742)
Q Consensus 695 ~l~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 737 (742)
+.+ .+++....+.+++....+++++|..|-+..|+ ++...++.
T Consensus 908 ~~stt~~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~l 953 (1100)
T KOG4271|consen 908 RRSTTWESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGL 953 (1100)
T ss_pred cccchhhhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhh
Confidence 999 99999999999999999999999998888888 88666554
No 2
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.4e-40 Score=330.98 Aligned_cols=192 Identities=23% Similarity=0.423 Sum_probs=175.4
Q ss_pred ccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCCCCCCCccchhhhHHHHhhh
Q 004616 165 VVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRE 244 (742)
Q Consensus 165 vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vA~lLK~fLRe 244 (742)
+||+||..++. ++.||.+|.+|+.||+++|+.+|||||++|+...+++++..+|+|........|+|+||++||.|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999998 67899999999999999999999999999999999999999999976556788999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccC
Q 004616 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (742)
Q Consensus 245 LPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr 324 (742)
||+||+|.+.|+.|+.++...+.+.++..++.++ .+||+.|+.+|+||+.||++|+.+++.|+||+.|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLL-DKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 9999999999999999998888899999999966 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 325 ~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
++..+ .........+..+|++||+||+.||+++.
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~~ 192 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGEDI 192 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence 98321 01133446678999999999999999863
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=1.2e-39 Score=329.07 Aligned_cols=189 Identities=20% Similarity=0.377 Sum_probs=168.0
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcC-C-cCCC--CCCCccchhhhHHH
Q 004616 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDCVKH 240 (742)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~-~~~~--~~~D~h~vA~lLK~ 240 (742)
||+||..++++. ..||.+|.+|++||+++|+.+|||||++|+..+|+++++.||++ . .++. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 999999999875 46999999999999999999999999999999999999999984 3 2332 23589999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcc
Q 004616 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (742)
Q Consensus 241 fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP 320 (742)
|||+||+||||.++|+.|+.+.+..+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEAL-MLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 99999999999999999999999888889999999966 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004616 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (742)
Q Consensus 321 ~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (742)
+|+|++... . ...+......+.+|++||+||+.||
T Consensus 160 ~Ll~~~~~~--------------~---~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS--------------A---LTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc--------------H---HHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999987311 0 1123344567889999999999998
No 4
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-39 Score=330.10 Aligned_cols=197 Identities=22% Similarity=0.348 Sum_probs=174.2
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCC---CCCCCccchhhhH
Q 004616 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCV 238 (742)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~---~~~~D~h~vA~lL 238 (742)
+++||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+...++.+++.+|.|.... ....|||+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 46999999999976 4579999999999999999999999999999999999999999996432 3456999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhh
Q 004616 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (742)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivf 318 (742)
|.|||+||+||+|.++|+.|+.+.+..+...++..++.+| .+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRIL-NKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 9999999999999999999999998888889999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 004616 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (742)
Q Consensus 319 aP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (742)
||+|+|++..+. . ...+.....+.+.+|++||+||+.||+++
T Consensus 161 aP~ll~~~~~~~--------------~-~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 161 APNLLWAKNEGS--------------L-AEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred ccccCCCCCCCh--------------h-hhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 999999873211 0 01112334568899999999999999986
No 5
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=4.1e-39 Score=326.29 Aligned_cols=191 Identities=23% Similarity=0.430 Sum_probs=168.6
Q ss_pred cccccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCCCCCCCccchhhh
Q 004616 164 LVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDC 237 (742)
Q Consensus 164 ~vFG~pL~~ll~~~-----~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vA~l 237 (742)
.|||+||++++... ..||.+|.+|+.||+++|+.+|||||++|+...++++++.||.|. ..+....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 38999999998642 349999999999999999999999999999999999999999996 345567899999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchh
Q 004616 238 VKHVLRELPSSPVPASCCTALLEAYKI--DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (742)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~l~~~~~--~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLA 315 (742)
||.|||+||+||+|.+.|+.|+.+... .+...++..++.+| .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQV-SILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999988764 34567788999865 699999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004616 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (742)
Q Consensus 316 ivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (742)
+||||+|||++. +++ .+.+..+..++.+|++||+||+.||
T Consensus 160 ivf~P~llr~~~------~~~-----------~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKV------EDP-----------ATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCC------CCH-----------HHHHhccHHHHHHHHHHHHhhhhcC
Confidence 999999999872 221 2234556677899999999999998
No 6
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.4e-39 Score=328.84 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=175.0
Q ss_pred ccccchHHHhhhC------CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC---cCCCCCCCccchh
Q 004616 165 VVGRPILLALEDI------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIG 235 (742)
Q Consensus 165 vFG~pL~~ll~~~------~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~---~~~~~~~D~h~vA 235 (742)
|||+||+.++.+. ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.++.+. .......|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 7999999999763 369999999999999999999999999999999999999999863 2234567999999
Q ss_pred hhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchh
Q 004616 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (742)
Q Consensus 236 ~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLA 315 (742)
++||.|||+||+||||.++|+.|+.+....+..+++.+++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLV-LLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999999988888888999999866 699999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 316 ivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
+||||+||++...++.+ .......+..+..++.+|++||+|++.||..+.
T Consensus 160 ivfaP~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~ 209 (216)
T cd04391 160 MIMAPNLFPPRGKHSKD-----------NESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHhccccCCCCCCCCCc-----------chhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence 99999999987432211 122233445566788999999999999999865
No 7
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=8.1e-39 Score=320.74 Aligned_cols=185 Identities=24% Similarity=0.345 Sum_probs=166.9
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCCCCCCCccchhhhHHHHhhh
Q 004616 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (742)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vA~lLK~fLRe 244 (742)
||+||+.++.+...||.+|.+|++||+++|+.+|||||++|+..+++.+++.|+.|. .......|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 999999999888899999999999999999999999999999999999999999985 3334568999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccC
Q 004616 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (742)
Q Consensus 245 LPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr 324 (742)
||+||||+++|+.|+.+....+..+++.+++.+| .+||+.|+.+|++|+.||++|+.+++.|||++.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVL-EQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 9999999999999999998888888999999966 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 325 ~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
++... + .+..+..+.++..+|++||+.
T Consensus 160 ~~~~~-----d-----------~~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSS-----D-----------PLTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCC-----C-----------HHHHHHhhhhhHHHHHHHhhC
Confidence 86321 1 123456677888999999973
No 8
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-38 Score=327.57 Aligned_cols=210 Identities=22% Similarity=0.352 Sum_probs=174.3
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCCCCCCCccchhhhHHH
Q 004616 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKH 240 (742)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vA~lLK~ 240 (742)
++|||+||..++++ +..||.+|.+|+.||+.+|+.+|||||++|+..+++.|++.++.+. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 46999999988876 4579999999999999999999999999999999999999999863 444556799999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcc
Q 004616 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (742)
Q Consensus 241 fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP 320 (742)
|||+||+||||.++|+.|+.+.+..+.++++.+++.++ ..||+.|+.+|++|+.||++|+.|++.|||++.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAI-LLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 99999999999999999999988878889999999966 59999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccc---cc--CCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 321 LLLRPLLAGECELED---DF--DMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 321 ~Llr~~~~~~~~~ed---~~--~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
+||+........+.. .+ ...|.. .+ ..+.....+..+|.+||+||+.||..+.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~l~e~~~~~~~v~~lI~~~~~lf~vp~ 218 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKP-DQ--KELSENKAAHQCLAYMIEECNTLFMVPK 218 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCC-cH--HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999986432111000 00 001111 11 1223344467889999999999998643
No 9
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=6.1e-39 Score=320.71 Aligned_cols=176 Identities=21% Similarity=0.348 Sum_probs=164.8
Q ss_pred cccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCCCCCCCccchhhhHHH
Q 004616 166 VGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (742)
Q Consensus 166 FG~pL~~ll~~~-----~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vA~lLK~ 240 (742)
||+||..++++. ..||.+|.+|+.||+++|+.+|||||++|+...++++++.|++|......+.|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999999863 359999999999999999999999999999999999999999997655567899999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcc
Q 004616 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (742)
Q Consensus 241 fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP 320 (742)
|||+||+||||.++|+.|+++....+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLL-KELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999999998888899999999966 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 004616 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (742)
Q Consensus 321 ~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (742)
+|+.+. .++..||+||+.||++
T Consensus 160 ~l~~~~--------------------------------~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQISN--------------------------------RLLYALLTHCQELFGN 181 (182)
T ss_pred cccCcH--------------------------------HHHHHHHHHHHHHcCC
Confidence 998743 6799999999999986
No 10
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4e-37 Score=335.58 Aligned_cols=303 Identities=23% Similarity=0.345 Sum_probs=239.1
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCC--CCCCCCceeeeeeCcEEcCCCcceeeccCCccEEE
Q 004616 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS--ALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (742)
Q Consensus 15 ~~~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~--~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fv 92 (742)
.....+++||||...|....++|.|+||++.+..-.+-.-+-+ +..+++...++.+..|.-....+ -+|+|||.
T Consensus 261 ~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS----IdKRFCFD 336 (812)
T KOG1451|consen 261 RPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS----IDKRFCFD 336 (812)
T ss_pred CCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc----cccceeee
Confidence 4456789999999998888899999999998763333332222 22234444455566555544333 47899999
Q ss_pred EeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhcccccccccccccccCCCCccccCccccccCCCCCCCcccccchHH
Q 004616 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILL 172 (742)
Q Consensus 93 it~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~aP~~a~~~g~~~~f~~~~~~~~e~s~~~~k~k~~~~~~vFG~pL~~ 172 (742)
+....+. .+.++||-+++++..||.|+. |..+++..+..-...+ -..|.+
T Consensus 337 ve~~erp-gviTmQALSE~drrlWmeAMD-------------G~ep~Y~s~~~~~~~~----------------~~qLd~ 386 (812)
T KOG1451|consen 337 VEVEERP-GVITMQALSEKDRRLWMEAMD-------------GAEPSYTSGENCSTYK----------------QTQLDD 386 (812)
T ss_pred eeecccC-CeeehHhhhhhHHHHHHHHhc-------------CCCccccCccccchhh----------------hhhhhh
Confidence 9875444 489999999999999999885 3333443332111000 001111
Q ss_pred HhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcC----Cc--CCCCCCCccchhhhHHHHhhhCC
Q 004616 173 ALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG----KT--EFSADEDAHVIGDCVKHVLRELP 246 (742)
Q Consensus 173 ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g----~~--~~~~~~D~h~vA~lLK~fLReLP 246 (742)
--=.||.+||..|+..|++++|+||..|...+|++|...+-.- +. +....+|+-+|.+.||.|||.||
T Consensus 387 ------iGF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLp 460 (812)
T KOG1451|consen 387 ------IGFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLP 460 (812)
T ss_pred ------hhHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCC
Confidence 1235899999999999999999999999999999998865331 22 22356899999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCC
Q 004616 247 SSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (742)
Q Consensus 247 ePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~ 326 (742)
+||+++.++..|+.+++..+.+.|+.+|+.++ .+||..||..|.-||+||..|+.|+..|.||..||++||||+|+|+.
T Consensus 461 EPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLV-HkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQ 539 (812)
T KOG1451|consen 461 EPLMTYELHKVFINAAKSDNQTYRVDAIHSLV-HKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQ 539 (812)
T ss_pred chhhHHHHHHHHHHHHhccchhhhHHHHHHHH-HhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCch
Confidence 99999999999999999999999999999966 69999999999999999999999999999999999999999999998
Q ss_pred CCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 327 LAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 327 ~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
| ..+||++.++.++-||++||+||+.||...+
T Consensus 540 -------E-----------ETVAAiMdIKFQNIVVEILIEnyeKIF~t~P 571 (812)
T KOG1451|consen 540 -------E-----------ETVAAIMDIKFQNIVVEILIENYEKIFKTKP 571 (812)
T ss_pred -------H-----------HHHHHHHcchhhhhhHHHHHhhhHHHhcCCC
Confidence 2 2478888889888899999999999998766
No 11
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-38 Score=324.38 Aligned_cols=192 Identities=18% Similarity=0.321 Sum_probs=167.7
Q ss_pred cccchHHHhhhCC------------CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcC--CCCCCCc
Q 004616 166 VGRPILLALEDID------------GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDA 231 (742)
Q Consensus 166 FG~pL~~ll~~~~------------~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~--~~~~~D~ 231 (742)
||+||..++++.+ .||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|+.|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998843 3999999999999999999999999999999999999999998532 3446799
Q ss_pred cchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcccccc-----c
Q 004616 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----E 306 (742)
Q Consensus 232 h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~-----~ 306 (742)
|+||++||.|||+||+||||.++|+.|+.+.+..+.++++..++.++ .+||+.|+.+|++|+.||++|+.++. .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVY-CLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999998888888899888855 69999999999999999999998764 5
Q ss_pred cCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 307 NkMta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
|||++.|||+||||+|||++..... .+........+|++||+||+.||+.+.
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~~------------------~~~~~~~~~~vv~~LI~n~~~if~vp~ 211 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNPN------------------TGDEYFLAIEAVNYLIENNEEFCEVPD 211 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCcc------------------hHHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence 9999999999999999998732110 112233466899999999999998754
No 12
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.2e-38 Score=319.85 Aligned_cols=190 Identities=22% Similarity=0.304 Sum_probs=165.7
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCCC----CCCCccchhhhH
Q 004616 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDCV 238 (742)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~----~~~D~h~vA~lL 238 (742)
++||+||..++.+ +..||.+|.+|++||+++|+ +|||||++|+..+++++++.||+|..... ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999999876 46899999999999999999 69999999999999999999999963221 346999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhh
Q 004616 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (742)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivf 318 (742)
|.|||+||+||||.++|+.|+++....+..+++..++.+| .+||+.|+.+|+||+.||++|+.+++.||||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI-QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 9999999999999999999999999888899999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 319 aP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
||+|||++..... .+ +-.++.+....++.||+|||+|
T Consensus 159 ~P~L~~~~~~~~~------~~------~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIESA------CF------SGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccccc------cc------hHHHHHHHHhhhhhheehhhcC
Confidence 9999998732110 01 1123455566677899999986
No 13
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5e-38 Score=315.41 Aligned_cols=183 Identities=27% Similarity=0.420 Sum_probs=163.1
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc-CC--CCCCCccchhhhHHHH
Q 004616 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EF--SADEDAHVIGDCVKHV 241 (742)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~--~~~~D~h~vA~lLK~f 241 (742)
||+||+.++++. ..||.+|.+|+.||+.+|+.+|||||++|+...+++++..+|.|.. ++ ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 999999999874 5699999999999999999999999999999999999999999863 22 3457999999999999
Q ss_pred hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhccc
Q 004616 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (742)
Q Consensus 242 LReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~ 321 (742)
||+||+||||+++|+.|+.+.+..+..+++..++.++ .+||+.|+.+|+||+.||++|+.+++.||||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLI-KSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 9999999999999999999999888899999999966 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 322 LLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 322 Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
|||++... . ..+.....++.+|++||+|
T Consensus 160 ll~~~~~~-------------~-----~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQET-------------G-----NIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCCcc-------------h-----HHHHHhHHHHHHHHHHhhC
Confidence 99987321 0 1122345678999999985
No 14
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=4.6e-38 Score=315.87 Aligned_cols=184 Identities=20% Similarity=0.386 Sum_probs=165.1
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCC---CCCCCccchhhhHH
Q 004616 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVK 239 (742)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~---~~~~D~h~vA~lLK 239 (742)
++||++|+.++++ +..||.+|.+|++||+++|+.+|||||++|+..+++.+++.|++|...+ ....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 4899999999986 4579999999999999999999999999999999999999999986432 34679999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhc
Q 004616 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (742)
Q Consensus 240 ~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfa 319 (742)
.|||+||+||||.++|+.|+.+.+..+..+++..++.+| .+||+.|+.+|+||+.||++|++|++.||||+.|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREIL-STLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 999999999999999999999999888889999999966 6999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 320 P~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
|+|+|.+... ..+....+++++++.||.|
T Consensus 160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence 9999976211 1134456788899999865
No 15
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.2e-38 Score=316.52 Aligned_cols=190 Identities=21% Similarity=0.354 Sum_probs=168.7
Q ss_pred ccccchHHHhhhC--CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCC----CCCCCccchhhhH
Q 004616 165 VVGRPILLALEDI--DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHVIGDCV 238 (742)
Q Consensus 165 vFG~pL~~ll~~~--~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~----~~~~D~h~vA~lL 238 (742)
.||+||+..+... ..||.+|.+|+.+|+++|+.+|||||++|+..+++++++.+|+|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999887653 579999999999999999999999999999999999999999996332 2346899999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhh
Q 004616 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (742)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivf 318 (742)
|.|||+||+||||.+.|+.|+.+.+..+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLI-HSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 9999999999999999999999988888899999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004616 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (742)
Q Consensus 319 aP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (742)
||+|+|++..+ . ..........+.+|+.||+||+.||
T Consensus 160 aP~l~r~~~~~--------------~---~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDN--------------M---ETMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCC--------------H---HHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999987321 1 1223345567799999999999998
No 16
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-37 Score=315.10 Aligned_cols=190 Identities=26% Similarity=0.451 Sum_probs=168.6
Q ss_pred CCcccccchHHHhhhC---CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc-CCCCCCCccchhhh
Q 004616 162 KSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC 237 (742)
Q Consensus 162 ~~~vFG~pL~~ll~~~---~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~vA~l 237 (742)
++.+||+||+.++.+. ..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|.. .+....|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 4679999999999764 5799999999999999999999999999999999999999999963 33333499999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhh
Q 004616 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (742)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAiv 317 (742)
||.|||+||+||+|.+.|+.|+.+.+.. ...++..++.++ .+||+.|+.+|.+|+.||++|+.|++.|+|++.|||+|
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~~i-~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQLL-QTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 9999999999999999999999987654 677899999966 58999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004616 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (742)
Q Consensus 318 faP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (742)
|||+|||++... + .+.....++.+|++||+||+.||
T Consensus 160 faP~l~~~~~~~---~----------------~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDAS---M----------------SLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCcc---c----------------CHHHHHHHHHHHHHHHHhHHhhC
Confidence 999999987321 0 12345667889999999999998
No 17
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=9.3e-38 Score=313.10 Aligned_cols=184 Identities=21% Similarity=0.327 Sum_probs=164.4
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCCCCCCCccchhhhHHHHhhh
Q 004616 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (742)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vA~lLK~fLRe 244 (742)
||+||+.++...+.||.+|.+|++||+++|+.+|||||++|+..+++.+++.|+.|. .......|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 999999999877899999999999999999999999999999999999999999875 3345578999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccC
Q 004616 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (742)
Q Consensus 245 LPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr 324 (742)
||+||||.++|+.|+.+....+..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVI-DQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 9999999999999999998888888999999866 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 004616 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLE 366 (742)
Q Consensus 325 ~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIe 366 (742)
++... + + ++.++...+...+|++||-
T Consensus 160 ~p~~~-----d--------~---~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDTT-----D--------P---LQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCCC-----C--------H---HHHHHHHhhccchhhhhcc
Confidence 87321 1 1 2334556667788998873
No 18
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-37 Score=315.59 Aligned_cols=195 Identities=24% Similarity=0.329 Sum_probs=168.0
Q ss_pred ccccchHHHhhh----CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCCCCCCCccchhhhHHH
Q 004616 165 VVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (742)
Q Consensus 165 vFG~pL~~ll~~----~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vA~lLK~ 240 (742)
|||+||..++.. .+.||.+|.+|+.||++ |+.+|||||++|+..+++++++.||+|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999988753 46899999999999986 6999999999999999999999999996443 35689999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcc
Q 004616 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (742)
Q Consensus 241 fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP 320 (742)
|||+||+||||.++|+.|+.+....+..+++.+++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLT-CLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999999988887788888888754 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 321 ~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
+||++..... .|.. ........++.+|++||+||+.||-.++
T Consensus 158 ~L~~~~~~~~-------~~s~-------~~~~~~~~~~~vv~~lI~~~~~i~~vp~ 199 (202)
T cd04394 158 NLFQSEEGGE-------KMSS-------STEKRLRLQAAVVQTLIDNASNIGIVPD 199 (202)
T ss_pred eeecCCCccc-------ccch-------hHHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999873211 1110 0112345567899999999999998754
No 19
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-37 Score=315.13 Aligned_cols=186 Identities=20% Similarity=0.345 Sum_probs=162.7
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc-CCCCCCCccchhhhHHHHhh
Q 004616 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (742)
Q Consensus 166 FG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~vA~lLK~fLR 243 (742)
||+||..++++ ++.||.+|.+|++||+++|+.+|||||++|+...++++++.|++|.. ......|||+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999999987 56799999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC------------CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCc
Q 004616 244 ELPSSPVPASCCTALLEAYKID------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (742)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~~~------------~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta 311 (742)
+||+||||+++|+.|+.+.+.. ...+++..++.+| ..||+.|+.+|+||+.||++|+.+++.|+|++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELL-GRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999876531 2357899999966 69999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 312 ~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
.|||+||||+|||++..+.. .+..+..+.+...+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~~---------------~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGDV---------------SMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCch---------------HHHHHhccchHHHHHHHHhhC
Confidence 99999999999999843211 123344567778899999986
No 20
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.9e-37 Score=314.04 Aligned_cols=187 Identities=24% Similarity=0.429 Sum_probs=163.6
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCCCCCCCccchhhhHHHHhhhCCCCCCChhhH
Q 004616 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (742)
Q Consensus 177 ~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vA~lLK~fLReLPePLlp~~l~ 255 (742)
.+.||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|. ..+....|+|+||++||.|||+||+||+|+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 4579999999999999999999999999999999999999999996 345557899999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcccccc-----------ccCCCccchhhhhcccccC
Q 004616 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----------ENRMTPSAVAACMAPLLLR 324 (742)
Q Consensus 256 ~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~-----------~NkMta~NLAivfaP~Llr 324 (742)
+.|+.+.... .++++.+++.+| .+||+.|+.+|+||+.||++|+.|++ .||||+.|||+||||+|||
T Consensus 86 ~~~i~~~~~~-~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 86 TAFIGTALLE-PDEQLEALQLLI-YLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999988765 678899999966 69999999999999999999999986 7999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 325 ~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
++..+...+++ ..+.+.....+..+|++||+||+.||..++
T Consensus 164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 164 KQKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred CCCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 98544322221 122344556678899999999999999865
No 21
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.9e-37 Score=310.61 Aligned_cols=177 Identities=21% Similarity=0.369 Sum_probs=161.6
Q ss_pred ccccchHHHhhh------CCCCcHHHHHHHHHHHhcC-CCcCCccccCCCHHHHHHHHHHhhcCC-cCC---CCCCCccc
Q 004616 165 VVGRPILLALED------IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGK-TEF---SADEDAHV 233 (742)
Q Consensus 165 vFG~pL~~ll~~------~~~VP~il~~~i~~L~~~G-l~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~---~~~~D~h~ 233 (742)
|||+||+++++. ...||.+|.+|+.||+++| +.+|||||++|+...++++++.|+.|. ..+ ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999999975 3469999999999999987 799999999999999999999999984 222 23579999
Q ss_pred hhhhHHHHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCcc
Q 004616 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (742)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~-~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~ 312 (742)
||++||.|||+||+||+|.++|+.|..+.+.. +..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+||+.
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLV-SQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988766 7788999999966 689999999999999999999999999999999
Q ss_pred chhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 004616 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (742)
Q Consensus 313 NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (742)
|||+||||+|+++. .++..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999875 5799999999999986
No 22
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.8e-37 Score=310.12 Aligned_cols=185 Identities=24% Similarity=0.406 Sum_probs=166.0
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc--CC----CCCCCccchhhhH
Q 004616 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EF----SADEDAHVIGDCV 238 (742)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~--~~----~~~~D~h~vA~lL 238 (742)
||+||+.++.+. ..||.+|.+|++||+.+|+.+|||||++|+..+++++++.+++|.. .+ ....|||+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 999999999764 5799999999999999999999999999999999999999999852 22 1246999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhh
Q 004616 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (742)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivf 318 (742)
|.|||+||+||+|.++|+.|+.+.+..+...++..++.++ ++||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLI-NDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 9999999999999999999999999888889999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004616 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (742)
Q Consensus 319 aP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (742)
||+|||++..+ +........++++||+||+.||
T Consensus 160 ~P~l~~~~~~~---------------------~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPDN---------------------AADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCccc---------------------hhhHHHHHHHHHHHHHHHHHhC
Confidence 99999987210 1123446789999999999998
No 23
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.3e-37 Score=316.40 Aligned_cols=188 Identities=20% Similarity=0.277 Sum_probs=161.2
Q ss_pred ccccchHHHhhhC----------------CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC----cC
Q 004616 165 VVGRPILLALEDI----------------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TE 224 (742)
Q Consensus 165 vFG~pL~~ll~~~----------------~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~----~~ 224 (742)
|||++|++.++.. +.||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.+. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999999888642 358999999999999999999999999999999999999999863 22
Q ss_pred CCCCCCccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHhccCChhHH
Q 004616 225 FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKI-----------------DRKEARISAMRSAILETFPEPNR 287 (742)
Q Consensus 225 ~~~~~D~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~-----------------~~~~~ri~~l~~lIl~~LP~~n~ 287 (742)
....+++|+||++||.|||+||+||||.++|+.|+.+... .+..+++..++.+| .+||+.|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLI-TRLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHH-HHCCHHHH
Confidence 2356799999999999999999999999999999887642 34678899999966 69999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 288 ~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
.+|+||+.||++|++|++.|||++.|||+||||+||+++... |. .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~---~~----------------~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE---MD----------------PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc---cC----------------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987211 11 01223456899999999
Q ss_pred ccccc
Q 004616 368 YENIF 372 (742)
Q Consensus 368 ~~~IF 372 (742)
++.+.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 99863
No 24
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=4.5e-37 Score=312.34 Aligned_cols=187 Identities=21% Similarity=0.313 Sum_probs=162.2
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc-CCCCCCCccchhhhHHHHhh
Q 004616 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (742)
Q Consensus 166 FG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~vA~lLK~fLR 243 (742)
||+||..++.+ .+.||.+|.+|++||+++|+.+|||||++|+...++++++.|+.|.. ....+.|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999986 57899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCC
Q 004616 244 ELPSSPVPASCCTALLEAYKID--------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (742)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~~~--------------~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkM 309 (742)
+||+||||+++|+.|+.+.... +...++..++.+| .+||+.|+.+|+||+.||++|+.|++.|||
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLL-RQLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999886531 2246788999955 699999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 310 ta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
++.|||+||||+|||++.... + ..+..+........+|++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~~-------~-------~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGDA-------D-------VSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCCc-------c-------hhHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999983211 0 0123345567788899999986
No 25
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=6e-37 Score=307.38 Aligned_cols=185 Identities=26% Similarity=0.378 Sum_probs=167.4
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCCCCCCCccchhhhHHHHhhh
Q 004616 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (742)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vA~lLK~fLRe 244 (742)
||+||..++.++..||.+|.+|++||+.+|+.+|||||++|+..+++++++.+++|. .......|+|+||++||.|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888899999999999999999999999999999999999999999984 3334568999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccC
Q 004616 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (742)
Q Consensus 245 LPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr 324 (742)
||+||||+++|+.|+.+....+..+++..++.+| .+||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVL-EQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 9999999999999999998888889999999866 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 325 ~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
++... + ...++....+...+|++||+.
T Consensus 160 ~~~~~-----~-----------~~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTA-----D-----------PLQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCC-----C-----------HHHHHHHHHHHHHHHHHHhhC
Confidence 87321 1 123466678888999999974
No 26
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.5e-37 Score=306.83 Aligned_cols=161 Identities=27% Similarity=0.506 Sum_probs=151.5
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCC-CCCCCccchhhhHHHHhh
Q 004616 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEF-SADEDAHVIGDCVKHVLR 243 (742)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~-~~~~D~h~vA~lLK~fLR 243 (742)
||+||..++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|. .++ ..+.|+|+||++||.|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 999999999988899999999999999999999999999999999999999999985 333 245789999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhccccc
Q 004616 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (742)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Ll 323 (742)
+||+||||+++|+.|+++....+..+++..++.+| ++||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELL-KKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 99999999999999999999888889999999966 69999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 004616 324 RPLL 327 (742)
Q Consensus 324 r~~~ 327 (742)
|+..
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8e-37 Score=312.14 Aligned_cols=187 Identities=21% Similarity=0.314 Sum_probs=159.0
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc-CCCCCCCccchhhhHHHHhh
Q 004616 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (742)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~vA~lLK~fLR 243 (742)
||+||..++.+. ++||.+|.+|++||+++|+.+|||||++|+...++++++.|++|.. ......|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 999999998764 6899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC---C-------------------HHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcc
Q 004616 244 ELPSSPVPASCCTALLEAYKID---R-------------------KEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (742)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~~~---~-------------------~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~ 301 (742)
+||+||||.++|+.|+.+.+.. + ...++.+++.+| ++||++|+.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLL-RQLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876421 0 023467888866 6999999999999999999999
Q ss_pred ccccccCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 302 SHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 302 ~~s~~NkMta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
+|++.|+|++.|||+||||+|||+...+. ...+..+.....+..||++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~--------------~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTDA--------------TVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCCc--------------chhHHHHhhhhhHHHHHHHHhhC
Confidence 99999999999999999999999873210 00122344566788999999974
No 28
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=2.5e-36 Score=305.05 Aligned_cols=163 Identities=19% Similarity=0.308 Sum_probs=151.4
Q ss_pred cccchHHHhhhCC-CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcC---CCCCCCccchhhhHHHH
Q 004616 166 VGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHV 241 (742)
Q Consensus 166 FG~pL~~ll~~~~-~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~---~~~~~D~h~vA~lLK~f 241 (742)
||+||..++.+.+ .||.+|.+|++||+++|+.+|||||++|+...++++++.||.|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 9999999998754 6999999999999999999999999999999999999999998532 24568999999999999
Q ss_pred hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhccc
Q 004616 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (742)
Q Consensus 242 LReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~ 321 (742)
||+||+||||.++|+.|+.+....+...++.+++.++ .+||+.|+.+|.+|+.||++|+++++.|||++.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLL-LSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 9999999999999999999998888889999999966 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004616 322 LLRPLLAG 329 (742)
Q Consensus 322 Llr~~~~~ 329 (742)
|||++...
T Consensus 160 Llr~~~~~ 167 (196)
T cd04387 160 LLRPSEKE 167 (196)
T ss_pred cCCCCccc
Confidence 99998543
No 29
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=2.4e-36 Score=303.73 Aligned_cols=184 Identities=26% Similarity=0.434 Sum_probs=162.7
Q ss_pred cccccchHHHhhh---CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc-CCCCCCCccchhhhHH
Q 004616 164 LVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVK 239 (742)
Q Consensus 164 ~vFG~pL~~ll~~---~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~D~h~vA~lLK 239 (742)
++||+||..++.+ .++||.+|.+|++||+++|+.+|||||++|+...++.+++.+++|.. .+..+.|||++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999999876 35799999999999999999999999999999999999999999974 4455689999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhh
Q 004616 240 HVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (742)
Q Consensus 240 ~fLReLPePLlp~~l~~~~l~~~~~~-~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivf 318 (742)
.|||+||+||||.++|+.|+.+.+.. ...+++..++.+| .+||+.|+.+|.+|+.||++|+.|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li-~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLL-QQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987654 5677889999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 319 aP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
||+||+.+.. .++ +.....+..+++.||+|
T Consensus 160 ~P~l~~~~~~----~~~---------------~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD----VED---------------MKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC----ccc---------------HHHHHHHHHHHHHHhcC
Confidence 9999998721 111 22345577899999987
No 30
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.8e-36 Score=306.31 Aligned_cols=186 Identities=23% Similarity=0.381 Sum_probs=157.0
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc-CCC-CCCCccchhhhHHHHhh
Q 004616 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFS-ADEDAHVIGDCVKHVLR 243 (742)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~-~~~D~h~vA~lLK~fLR 243 (742)
||.||.+ ++++ +|.+||+||++ |+.+|||||++|+..+++.|++.|++|.. .+. ...|+|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888843 3444 78899999998 99999999999999999999999999963 333 35799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCc
Q 004616 244 ELPSSPVPASCCTALLEAYK------------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (742)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~------------~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta 311 (742)
+||+||||.++|+.|+.+.+ ..+.+.++.+++.++ .+||+.|+.+|+||+.||++|++|++.||||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLL-LLLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 99999999999999987654 234567788999855 69999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 312 ~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
.|||+||||+|||++..+ ...+ ......++.+|++||+||+.||+.+.
T Consensus 153 ~NLAivf~P~Ll~~~~~~--------------~~~~---~~~~~~~~~iv~~lI~~~~~iF~~~~ 200 (208)
T cd04392 153 DNLALLFTPHLICPRNLT--------------PEDL---HENAQKLNSIVTFMIKHSQKLFKAPA 200 (208)
T ss_pred HHHHHHhCcccCCCCCCC--------------HHHH---HHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 999999999999986211 1111 12335678999999999999999875
No 31
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.1e-36 Score=303.91 Aligned_cols=195 Identities=22% Similarity=0.317 Sum_probs=159.7
Q ss_pred cccchHHHhhhC---CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC--cCCC--CCCCccchhhhH
Q 004616 166 VGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDCV 238 (742)
Q Consensus 166 FG~pL~~ll~~~---~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~--~~~~--~~~D~h~vA~lL 238 (742)
||+||..++.+. ..||.+|.+|++||+.+|+.+|||||++|+...++.|++.|+++. .++. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 999999999873 469999999999999999999999999999999999999999874 2222 234899999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCC---HHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchh
Q 004616 239 KHVLRELPSSPVPASCCTALLEAYKIDR---KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (742)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~---~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLA 315 (742)
|.|||+||+||||.++|+.|+.+..... ...++..++.+| ++||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li-~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII-DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999876533 234466778755 699999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCCC-ccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 004616 316 ACMAPLLLRPLLAGEC-ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (742)
Q Consensus 316 ivfaP~Llr~~~~~~~-~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~ 368 (742)
+||||+||+++..+.. .+....+|.... .....+...++.+||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVS-------TVDFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccc-------hhhHHHHHHHHHHHHHhc
Confidence 9999999999865421 111112222111 223345678999999865
No 32
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=351.01 Aligned_cols=335 Identities=18% Similarity=0.231 Sum_probs=244.4
Q ss_pred eEEEeeeeee----ecC----CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCc----------eeeeeeCcEEcCCCcc
Q 004616 19 VFKSGPLFIS----SKG----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG----------EVNLTLGGIDLNNSGS 80 (742)
Q Consensus 19 V~KeG~L~l~----KkG----~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~----------~~~l~L~~I~L~~~~s 80 (742)
..|+||||+. |+| .....|+.-|.+|.++.++.|++.....++... +-.++++.+.+....
T Consensus 923 ~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y- 1001 (1973)
T KOG4407|consen 923 SEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY- 1001 (1973)
T ss_pred hhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh-
Confidence 6789999965 444 457889999999999999999987653332211 111122222221111
Q ss_pred eeeccCCccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhcccccccccc-------------ccc--------
Q 004616 81 VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGH-------------NGI-------- 139 (742)
Q Consensus 81 v~~~~~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~aP~~a~~~g~-------------~~~-------- 139 (742)
....++..|.++. .+...|.|+|++-++|..|+..+++..........|++. +++
T Consensus 1002 --setkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~ 1077 (1973)
T KOG4407|consen 1002 --SETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTV 1077 (1973)
T ss_pred --hhhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCC
Confidence 1123344555543 223679999999999999999997765422111112211 000
Q ss_pred -------------ccCCCCcc------------ccCccccccCCCC-----------------------------CCCcc
Q 004616 140 -------------FRNDTNDT------------IEGSFHQWRDKRP-----------------------------VKSLV 165 (742)
Q Consensus 140 -------------f~~~~~~~------------~e~s~~~~k~k~~-----------------------------~~~~v 165 (742)
|.-..+.. -..+..++|+|+. .+-.+
T Consensus 1078 ~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~ 1157 (1973)
T KOG4407|consen 1078 PSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPV 1157 (1973)
T ss_pred cchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcc
Confidence 11000000 0011112222211 11249
Q ss_pred cccchHHHhh--hCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc------CCCCCCCccchhhh
Q 004616 166 VGRPILLALE--DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDAHVIGDC 237 (742)
Q Consensus 166 FG~pL~~ll~--~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~------~~~~~~D~h~vA~l 237 (742)
|||+|...-- -.+.||.+|+.|+..++.+||.+.||||++|+...|..|++.++.+.+ .++.+.|+++|.+|
T Consensus 1158 ~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSL 1237 (1973)
T KOG4407|consen 1158 LGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSL 1237 (1973)
T ss_pred cccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHH
Confidence 9999954321 145699999999999999999999999999999999999999999842 23456899999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhh
Q 004616 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (742)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAiv 317 (742)
||.|||.||+||||..+|..||++-+..+.-+|+..||.+| +.||.++|.+|++|+.||.+|+.|+++|||-+.||||+
T Consensus 1238 LK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~-~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~ 1316 (1973)
T KOG4407|consen 1238 LKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLL-RKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIM 1316 (1973)
T ss_pred HHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHHHhcccccccccccceeEE
Confidence 99999999999999999999999999999999999999955 79999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 318 faP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
|||+|+|++. |+.+ .+...+..+++||+.||.+|+++|++.-
T Consensus 1317 FGPsiVRts~--------------Dnm~---tmVthM~dQckIVEtLI~~~dwfF~esg 1358 (1973)
T KOG4407|consen 1317 FGPSIVRTSD--------------DNMA---TMVTHMSDQCKIVETLIHYNDWFFDESG 1358 (1973)
T ss_pred eccceeccCC--------------ccHH---HHhhcchhhhhHHHHHHhhhhheeccCC
Confidence 9999999872 2222 3345667789999999999999999854
No 33
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3e-35 Score=294.58 Aligned_cols=180 Identities=21% Similarity=0.392 Sum_probs=161.8
Q ss_pred ccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcC---CCCCCCccchhhhHHHHhh
Q 004616 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHVLR 243 (742)
Q Consensus 167 G~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~---~~~~~D~h~vA~lLK~fLR 243 (742)
|.+|+...-...+||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.+... .....|||+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 7788877777789999999999999999999999999999999999999999986422 2456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhccccc
Q 004616 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (742)
Q Consensus 244 eLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Ll 323 (742)
+||+||||.++|+.|+.+.+..+.+.++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELI-RRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 99999999999999999999888899999999966 69999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 004616 324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (742)
Q Consensus 324 r~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~ 368 (742)
|++.. .........+||+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 0122345778999999998
No 34
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=6.4e-35 Score=294.06 Aligned_cols=178 Identities=21% Similarity=0.318 Sum_probs=157.7
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCCCCCCCccchhhhHHHHhhhCCCCCCChhhH
Q 004616 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (742)
Q Consensus 177 ~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vA~lLK~fLReLPePLlp~~l~ 255 (742)
...||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|++|. .......|+|+||++||.|||+||+||||.++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 3579999999999999999999999999999999999999999885 334455699999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCCCCCCCcccc
Q 004616 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335 (742)
Q Consensus 256 ~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~~~~~~~~ed 335 (742)
+.|+++.+..+.+.++..++.++ ..||+.|+.+|+||+.||++|+. ++.||||+.|||+||||+||+.+..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~----- 166 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQAI-SELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP----- 166 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc-----
Confidence 99999999888889999999966 69999999999999999999999 999999999999999999999873211
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 004616 336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (742)
Q Consensus 336 ~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~I 371 (742)
...+++..+..++.+|+.||++-+..
T Consensus 167 ----------~~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 167 ----------DPMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ----------cHHHHHHHhHHHHHHHHHHHhCCccc
Confidence 01344566677889999999987653
No 35
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.5e-35 Score=299.28 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=161.0
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcC--CCcC----CccccCCCHHHHHHHHHHhhcCCcCC-----CCCCCccc
Q 004616 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFG--TKVE----GILRQAADVEEVDRRVQEYEQGKTEF-----SADEDAHV 233 (742)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~G--l~~E----GIFR~sg~~~~v~~L~~~ld~g~~~~-----~~~~D~h~ 233 (742)
||+||..++... ..||.+|.+|++||+.+| +..+ ||||++|+...+++|++.|++|.... ....|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 999999999874 479999999999999965 3333 99999999999999999999985332 34689999
Q ss_pred hhhhHHHHhhhCCCCCCChhhHHHHHHHHhc------CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcccccccc
Q 004616 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKI------DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (742)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~~l~~~~~------~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~N 307 (742)
||++||.|||+||+||||+++|+.|+.+... .+.++|+.+++.++ .+||++|+.+|++|+.||.+|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l-~~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTL-SQLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887532 45789999999966 6999999999999999999999887666
Q ss_pred ---CCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 004616 308 ---RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (742)
Q Consensus 308 ---kMta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (742)
||++.|||+||||+|+|+....... ........+|++||+||+.||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~~~-------------------~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESLLT-------------------IGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCcccccc-------------------cccHHHHHHHHHHHHhHHHhccc
Confidence 6999999999999999987322100 11245678999999999999986
No 36
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.1e-35 Score=292.52 Aligned_cols=178 Identities=21% Similarity=0.247 Sum_probs=152.6
Q ss_pred cccchHHHhhhC------CCCcHHHHHHHHHHHh-cCCCcCCccccCCCHHHHHHHHHHhhcCCcCCCCCCCccchhhhH
Q 004616 166 VGRPILLALEDI------DGGPSFLEKALRFLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (742)
Q Consensus 166 FG~pL~~ll~~~------~~VP~il~~~i~~L~~-~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vA~lL 238 (742)
||+||++++.+. ..||.+|..|+++|.+ +|+.+|||||++|+...++++++.+|+|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 999999998652 3599999999999865 899999999999999999999999999987666678999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcccc--ccccCCCccchhh
Q 004616 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSH--AHENRMTPSAVAA 316 (742)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~--s~~NkMta~NLAi 316 (742)
|.|||+||+||+|.++|+.++.+... ...++.+| .+||+.|+.+|.||+.||+.|+++ ++.|||++.|||+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~------~~~~~~li-~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAi 153 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASED------PDKAVEIV-QKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM 153 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcC------HHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Confidence 99999999999999999999886532 23456645 699999999999999999999975 4789999999999
Q ss_pred hhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 317 vfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
||||+|||++..+ + ...+..+.+...+|+.||+|
T Consensus 154 vf~P~l~~~~~~~--------------~---~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 154 VFAPNILRCTSDD--------------P---RVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HHccccCCCCCCC--------------H---HHHHHccHHHHHHHHHHhcC
Confidence 9999999987321 1 12344566788999999987
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.8e-35 Score=294.72 Aligned_cols=171 Identities=24% Similarity=0.403 Sum_probs=149.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHH-hhcC-----CcCCCC-CCCccchhhhHHHHhhhCCCCCC
Q 004616 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-----KTEFSA-DEDAHVIGDCVKHVLRELPSSPV 250 (742)
Q Consensus 178 ~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~-ld~g-----~~~~~~-~~D~h~vA~lLK~fLReLPePLl 250 (742)
+..|.||.+|++||+++|+.+|||||++|+...|++++.. ++.+ ..++.. ..|+|+||++||.|||+||+|||
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 4456789999999999999999999999999999999875 5654 233333 57999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCCCCCC
Q 004616 251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGE 330 (742)
Q Consensus 251 p~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~~~~~ 330 (742)
|+++|+.|+.+.+..+.+.++..++.+| .+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||++...
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~- 183 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVNAIHSLV-HKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET- 183 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc-
Confidence 9999999999999988899999999966 69999999999999999999999999999999999999999999987210
Q ss_pred CccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 331 CELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 331 ~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
.+++......+.+|++||+|
T Consensus 184 -----------------~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 184 -----------------VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred -----------------HHHHHHhHHHHHHhhhHhcC
Confidence 12344566678899999987
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=4.7e-34 Score=287.75 Aligned_cols=177 Identities=19% Similarity=0.279 Sum_probs=150.2
Q ss_pred hHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCCCCCCCccchhhhHHHHhhhCCCC
Q 004616 170 ILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSS 248 (742)
Q Consensus 170 L~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vA~lLK~fLReLPeP 248 (742)
|.+.+...+.+|.+|.+|+++|+++|+++|||||++|+.. +.++++.|+.+. .......|+|+||++||.|||+||+|
T Consensus 5 ~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPeP 83 (200)
T cd04388 5 LTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNP 83 (200)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCc
Confidence 4444444678999999999999999999999999999875 788999999863 23345689999999999999999999
Q ss_pred CCChhhHHHHHHHHh-cCCHHHHHHHHHHHHh-ccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCC
Q 004616 249 PVPASCCTALLEAYK-IDRKEARISAMRSAIL-ETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (742)
Q Consensus 249 Llp~~l~~~~l~~~~-~~~~~~ri~~l~~lIl-~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~ 326 (742)
|||+++|+.|+.+.. ..+.++++..++.+|. ..||+.|+.+|+|||.||++|++|+..|+|++.|||+||||+|||++
T Consensus 84 Lip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~ 163 (200)
T cd04388 84 VIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQ 163 (200)
T ss_pred cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCC
Confidence 999999999999874 5567788999998652 27999999999999999999999999999999999999999999997
Q ss_pred CCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 004616 327 LAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (742)
Q Consensus 327 ~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~ 368 (742)
.... ....+...+|++||.++
T Consensus 164 ~~~~---------------------~~~~~~~~vvE~Li~~~ 184 (200)
T cd04388 164 PASS---------------------DSPEFHIRIIEVLITSE 184 (200)
T ss_pred cccc---------------------cchhhHHHHHHHHHHHH
Confidence 3311 11244678999999864
No 39
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=6.1e-33 Score=312.53 Aligned_cols=323 Identities=18% Similarity=0.312 Sum_probs=241.5
Q ss_pred CceEEEeeeeeeecCC--------CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce--eecc-
Q 004616 17 NTVFKSGPLFISSKGI--------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--VVRE- 85 (742)
Q Consensus 17 ~~V~KeG~L~l~KkG~--------~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv--~~~~- 85 (742)
+.++..|+||..-... .+..-.++||||.|+.|+||.+.....|.+. |.+.....+ ...+
T Consensus 490 ~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~l---------I~~~Eivclav~~pd~ 560 (1186)
T KOG1117|consen 490 QSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNGL---------ININEIVCLAVHPPDT 560 (1186)
T ss_pred ccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCce---------eeccceEEEeecCCCC
Confidence 4566779999663321 2445689999999999999999888776542 222221111 1111
Q ss_pred --CCccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhcccccc--------cc-------------cccccccC
Q 004616 86 --DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL--------VM-------------GHNGIFRN 142 (742)
Q Consensus 86 --~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~aP~~a~--------~~-------------g~~~~f~~ 142 (742)
...++|++......+|.|+|.+++.+++..|..+|-++. .|.-+. .. .++|||..
T Consensus 561 ~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhf--vp~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfsl 638 (1186)
T KOG1117|consen 561 YPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHF--VPLFAENLLAADYDLLGRLFYKDCHALDQARKGWFSL 638 (1186)
T ss_pred CCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhc--CchHHHHhccchhhhhhhhhhcChhhhhhccccceec
Confidence 224566666556678999999999999999999998875 232221 11 13688876
Q ss_pred CCCccc--------c---------------CccccccCCCCCCCcccccch----------------------------H
Q 004616 143 DTNDTI--------E---------------GSFHQWRDKRPVKSLVVGRPI----------------------------L 171 (742)
Q Consensus 143 ~~~~~~--------e---------------~s~~~~k~k~~~~~~vFG~pL----------------------------~ 171 (742)
+.+... + ++..+.-.+.+.--..-|+.| .
T Consensus 639 ~gssl~~~~~~~~ve~d~~hlrrlqElsi~s~~~n~~K~~~l~lve~grTLYI~g~~rldft~W~~AIekaa~~~gt~Lq 718 (1186)
T KOG1117|consen 639 DGSSLHFCLQMQPVEEDRMHLRRLQELSISSMVQNGEKLDVLVLVEKGRTLYIQGETRLDFTVWHTAIEKAAGTDGTALQ 718 (1186)
T ss_pred CCCeeEEecCCCcCchhHHHHHHHHHHhhhhccCCcccccceEEEeeccEEEEecCCcchHHHHHHHHHHHhcCCcchhh
Confidence 554311 1 111111111111001112222 1
Q ss_pred HHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCC---CCCCCccchhhhHHHHhhhCCCC
Q 004616 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHVLRELPSS 248 (742)
Q Consensus 172 ~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~---~~~~D~h~vA~lLK~fLReLPeP 248 (742)
+..-..+.||.||..||.|+.++|+..|||||++|...++.+|...|-+....+ ..+.-+.+|+++||.|||+|++|
T Consensus 719 eqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Flrdlddp 798 (1186)
T KOG1117|consen 719 EQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDP 798 (1186)
T ss_pred hhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCcc
Confidence 111124679999999999999999999999999999999999999998875322 34567899999999999999999
Q ss_pred CCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCCCC
Q 004616 249 PVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLA 328 (742)
Q Consensus 249 Llp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~~~ 328 (742)
|+|.++|..|+++....+.++++..+..+| ..||..||.||+.||.||++|..+++.|+|+++|||+||||+||.....
T Consensus 799 Lft~~~~~~w~eaae~~d~~Er~~rY~~lI-~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgq 877 (1186)
T KOG1117|consen 799 LFTKELYPYWIEAAETQDDKERIKRYGALI-RSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQ 877 (1186)
T ss_pred ccchhhhhhHHHhhhccchHHHHHHHHHHH-hhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCC
Confidence 999999999999999999999999999977 5999999999999999999999999999999999999999999997611
Q ss_pred CCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 329 GECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 329 ~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
..+..+|++-||.+|..||.-++
T Consensus 878 -------------------------dehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 878 -------------------------DEHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred -------------------------chhhhhHHHHHhcCceEEEEecH
Confidence 13567899999999999998765
No 40
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.9e-31 Score=299.65 Aligned_cols=320 Identities=18% Similarity=0.296 Sum_probs=233.0
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCC---CceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCCceEEEEeCCH
Q 004616 34 WKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (742)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~~~~~p~g---~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAdSe 110 (742)
...|..-|..+.++.++||.+...+..-+ ...-........+.+............-+.+......+..|++...++
T Consensus 270 ~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne 349 (650)
T KOG1450|consen 270 STVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNE 349 (650)
T ss_pred CcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCC
Confidence 34599999999999999999876544332 111111111112211111101111111233333334467899999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccccC--CC--------------------------Ccc---ccCc--------
Q 004616 111 EDLYEWKTALELALAQAPSAALVMGHNGIFRN--DT--------------------------NDT---IEGS-------- 151 (742)
Q Consensus 111 eE~~eWi~AL~~ai~~aP~~a~~~g~~~~f~~--~~--------------------------~~~---~e~s-------- 151 (742)
.....|..++..++...|+.+....++ ..+. +. +.. +.+.
T Consensus 350 t~~~d~~~~~~~~~~~~~~~~s~~s~g-~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~ 428 (650)
T KOG1450|consen 350 TSFEDWSSNLPEVINELPNSASPNSQG-DLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDP 428 (650)
T ss_pred ccccchhhcchhhhhccCCCCCCCCCC-CCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccch
Confidence 999999999999998655533221111 0000 00 000 0000
Q ss_pred -------------cccccCCC-CCCCcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHH
Q 004616 152 -------------FHQWRDKR-PVKSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ 216 (742)
Q Consensus 152 -------------~~~~k~k~-~~~~~vFG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~ 216 (742)
....+.+. +....+||++|+.+|++. +.||.+|..|+..|+..|+..+||||++|+...|++|+.
T Consensus 429 ~~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~ 508 (650)
T KOG1450|consen 429 QKKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLRE 508 (650)
T ss_pred HHHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHH
Confidence 00011222 223789999999999874 579999999999999999999999999999999999999
Q ss_pred HhhcCC-cCC--CCCCCccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHH
Q 004616 217 EYEQGK-TEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRI 293 (742)
Q Consensus 217 ~ld~g~-~~~--~~~~D~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~L 293 (742)
.+|... ..+ ..+.|+|+|+++||.|||+||+||+|..++..|..+........+...+..+| ..||.+|+.||+||
T Consensus 509 ~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li-~~lP~~n~~Tlr~l 587 (650)
T KOG1450|consen 509 QSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELI-GLLPDANYQTLRYL 587 (650)
T ss_pred hcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHH-hhCCCcchhHHHHH
Confidence 999643 333 34479999999999999999999999999999999999999999999999977 59999999999999
Q ss_pred HHHHhhccccccccCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 004616 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (742)
Q Consensus 294 l~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~ 373 (742)
+.||.+|..|++.|||+.+||||||||+|+.+.... + ..+..+.....||+.||+++..+|+
T Consensus 588 v~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~-----------~-------~~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 588 VRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQET-----------S-------SEAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHHHhccccccccccceEEEeccccccccccc-----------c-------chhhHHhHHHHHHHHHHHhhHhhcc
Confidence 999999999999999999999999999999976321 0 1133456678999999999999997
No 41
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=4.4e-31 Score=261.06 Aligned_cols=170 Identities=29% Similarity=0.488 Sum_probs=154.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCC--CCCCCccchhhhHHHHhhhCCCCCCChhhHH
Q 004616 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (742)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~--~~~~D~h~vA~lLK~fLReLPePLlp~~l~~ 256 (742)
.||.+|.+|+.||+++|+.+|||||++|+..+++++++.++.|.... ....|+|++|++||.|||+||+||||.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999997543 6779999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCCCCCCCccccc
Q 004616 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (742)
Q Consensus 257 ~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~~~~~~~~ed~ 336 (742)
.|+.+....+..+++..++.++ .+||+.|+.+|.+|+.||+.|+.+++.|+|++.|||+||||+|+|++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~------- 153 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELI-SLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE------- 153 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCccc-------
Confidence 9999998888889999999966 69999999999999999999999999999999999999999999987321
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 337 FDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
........+...+|++||+|
T Consensus 154 -----------~~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 154 -----------VASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhc
Confidence 01234567788999999997
No 42
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=3.1e-29 Score=282.82 Aligned_cols=205 Identities=21% Similarity=0.273 Sum_probs=172.3
Q ss_pred CCCCCCCcccccchHHHhhh----CCCCcHHHHHHHH-HHH-hcCCCcCCccccCCCHHHHHHHHHHhhcCCcCCCCCCC
Q 004616 157 DKRPVKSLVVGRPILLALED----IDGGPSFLEKALR-FLE-KFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADED 230 (742)
Q Consensus 157 ~k~~~~~~vFG~pL~~ll~~----~~~VP~il~~~i~-~L~-~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D 230 (742)
........||||++..+... .+.||.++.-+.. +|+ +.|++.|||||++|...+++.+|+.||.|.+......|
T Consensus 138 rals~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iD 217 (577)
T KOG4270|consen 138 RALSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYID 217 (577)
T ss_pred ccccchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCC
Confidence 33445678999999776543 3447999988887 655 48999999999999999999999999999644433789
Q ss_pred ccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCC
Q 004616 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMT 310 (742)
Q Consensus 231 ~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt 310 (742)
||+||++||.|||+||+|++++.+|+.|+.+.+..+.+++...++.+ +.+||+.|+.+|+|+|.||+.|+++++.||||
T Consensus 218 vH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~-~~~LPp~n~slL~yli~flA~v~~~~~vNKMs 296 (577)
T KOG4270|consen 218 VHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQC-LQKLPPTNYSLLRYLIRFLADVVEKEHVNKMS 296 (577)
T ss_pred HHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHH-HHhCCcchHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999994 47999999999999999999999999999999
Q ss_pred ccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 004616 311 PSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (742)
Q Consensus 311 a~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (742)
++||||||||+|+|+... .+.+..+....+.+..+|+..|++++..|+....
T Consensus 297 ~~NlAiV~gPNl~~~~~p---------------~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~~~ 348 (577)
T KOG4270|consen 297 ARNLAIVFGPNLLWMKDP---------------LTALMYAVQVSNFLKGLIEKTLEERDTSFPGELE 348 (577)
T ss_pred hhhceeEecCCccccCCh---------------HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 999999999999998721 1223344444555666777888888888877663
No 43
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.96 E-value=1.1e-29 Score=261.38 Aligned_cols=142 Identities=18% Similarity=0.288 Sum_probs=128.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCccccCCCHHH----HHHHHHHhhcCCcCCCCCCCccchhhhHHHHhhhCCCCCCChhh
Q 004616 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEE----VDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASC 254 (742)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~----v~~L~~~ld~g~~~~~~~~D~h~vA~lLK~fLReLPePLlp~~l 254 (742)
.||.+|.+|++||+++|+.+|||||++|+... ++++++.+|+|.... ...|+|+||++||.|||+||+||||.++
T Consensus 49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~ 127 (220)
T cd04380 49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSL 127 (220)
T ss_pred ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHH
Confidence 48999999999999999999999999999999 999999999995433 6789999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-cCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCCC
Q 004616 255 CTALLEAYKIDRKEARISAMRSAILE-TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (742)
Q Consensus 255 ~~~~l~~~~~~~~~~ri~~l~~lIl~-~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~~ 327 (742)
|+.|+.+... + . ..++. +++ +||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|||++.
T Consensus 128 y~~~~~~~~~-~-~---~~~~~-ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 128 YERLLEAVAN-N-E---EDKRQ-VIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHhcC-c-H---HHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 9999998622 1 1 23455 446 99999999999999999999999999999999999999999999983
No 44
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.96 E-value=6.5e-30 Score=281.05 Aligned_cols=209 Identities=24% Similarity=0.344 Sum_probs=173.8
Q ss_pred CcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc---CCCCCCCccchhhhH
Q 004616 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFSADEDAHVIGDCV 238 (742)
Q Consensus 163 ~~vFG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~---~~~~~~D~h~vA~lL 238 (742)
+.||||||..++++. -.||.+|.+++.||+++|++++||||++|...+|+.|++.++.... ..++....|+||++|
T Consensus 298 ~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlL 377 (674)
T KOG2200|consen 298 GGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLL 377 (674)
T ss_pred CceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHH
Confidence 579999999999874 4699999999999999999999999999999999999999987532 234556789999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhh
Q 004616 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (742)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivf 318 (742)
|.|||+||+||||.++.+.|+.+++.....+++++++.+|+ .||.+||.+|+.|+.||.+|+.+++.|+||+.|||+||
T Consensus 378 KqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvcm 456 (674)
T KOG2200|consen 378 KQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCM 456 (674)
T ss_pred HHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhh
Confidence 99999999999999999999999999999999999999887 89999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCC----ccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 319 APLLLRPLLAGEC----ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 319 aP~Llr~~~~~~~----~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
||+||........ .+..-. ..|- +.+ ..+....-+..++..||.+++.+|....
T Consensus 457 APsLF~l~~~~~d~spr~~~~k~-~~g~-p~~--kel~~a~aaa~~l~~mI~y~k~Lf~VP~ 514 (674)
T KOG2200|consen 457 APSLFHLNALKLDSSPRVRQKKS-ETGK-PDQ--KELNEALAAAQGLAHMIKYQKLLFTVPS 514 (674)
T ss_pred cchHHhhccCCCCCCcccccccc-ccCC-Cch--HHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 9999986532211 000000 0010 011 0122233456789999999999999865
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.96 E-value=6.6e-29 Score=242.97 Aligned_cols=168 Identities=31% Similarity=0.529 Sum_probs=152.0
Q ss_pred cHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcC-CCCCCCccchhhhHHHHhhhCCCCCCChhhHHHHH
Q 004616 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALL 259 (742)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~-~~~~~D~h~vA~lLK~fLReLPePLlp~~l~~~~l 259 (742)
|.+|.+|+.||+++|+.++||||++|+...++.+++.++.|... .....|+|++|++||.|||+||+||||.+.|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999754 56678999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCCCCCCCccccccCC
Q 004616 260 EAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM 339 (742)
Q Consensus 260 ~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~~~~~~~~ed~~~~ 339 (742)
.+....+...++..++.++ ..||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+||++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i-~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELL-KSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 9998888899999999966 59999999999999999999999999999999999999999999987321
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 340 NGDNSAQLLAAANAANNAQAIIATLLEE 367 (742)
Q Consensus 340 ~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (742)
............+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 11233456678899999975
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-29 Score=286.79 Aligned_cols=184 Identities=21% Similarity=0.382 Sum_probs=163.6
Q ss_pred CCCCcccccchHHHhh-----hCCCCcHHHHHHHHHHH-hcCCCcCCccccCCCHHHHHHHHHHhhcC-CcCC---CCCC
Q 004616 160 PVKSLVVGRPILLALE-----DIDGGPSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF---SADE 229 (742)
Q Consensus 160 ~~~~~vFG~pL~~ll~-----~~~~VP~il~~~i~~L~-~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~~~~---~~~~ 229 (742)
..++.|||.|+...+. ..-++|.||.+|++||+ .+|++.|||||++|.+..|+.|++.||.+ +.++ ..+.
T Consensus 894 ~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~ 973 (1112)
T KOG4269|consen 894 VKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEM 973 (1112)
T ss_pred ceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccccc
Confidence 3468999987754442 23579999999999999 59999999999999999999999999998 4322 4568
Q ss_pred CccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCC
Q 004616 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (742)
Q Consensus 230 D~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkM 309 (742)
|||+|||+||+|||+||+|||+.++|..|.......+...+...+..+|. .||++|+.+|.+|+.||++|+.++.+|||
T Consensus 974 dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~-slP~aNl~l~~~LlehL~RI~e~ekvNKM 1052 (1112)
T KOG4269|consen 974 DVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLIS-SLPPANLALFLFLLEHLKRIAEKEKVNKM 1052 (1112)
T ss_pred cHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHH-hCCChhHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999774 89999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 310 ta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
+++|||+||+|+|.+|. .+...+|-||+.||.+..
T Consensus 1053 nlrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~ 1087 (1112)
T KOG4269|consen 1053 NLRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVM 1087 (1112)
T ss_pred cccceeeeecccccCcH--------------------------------Hhhhhhccchhhhhccch
Confidence 99999999999999986 335567788999998865
No 47
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=2.4e-28 Score=235.58 Aligned_cols=145 Identities=30% Similarity=0.529 Sum_probs=135.9
Q ss_pred cHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcC--CCCCCCccchhhhHHHHhhhCCCCCCChhhHHHH
Q 004616 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (742)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~--~~~~~D~h~vA~lLK~fLReLPePLlp~~l~~~~ 258 (742)
|.+|..|++||+++|+.++||||++|+...++++++.++.|... .....|+|+||++||.||++||+||+|.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999755 6778999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCC
Q 004616 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (742)
Q Consensus 259 l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~ 326 (742)
+.+....+..+++..++.++ .+||..|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l-~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLL-QSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHHhh-hccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 99888888899999999966 69999999999999999999999999999999999999999999987
No 48
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=1.5e-27 Score=254.67 Aligned_cols=201 Identities=24% Similarity=0.353 Sum_probs=175.1
Q ss_pred CCCCCCCcccccchHHHhhh---CCCCcHHHHHHHHHHHhcC-CCcCCccccCCCHHHHHHHHHHhhcCCcCC-CCCCCc
Q 004616 157 DKRPVKSLVVGRPILLALED---IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEF-SADEDA 231 (742)
Q Consensus 157 ~k~~~~~~vFG~pL~~ll~~---~~~VP~il~~~i~~L~~~G-l~~EGIFR~sg~~~~v~~L~~~ld~g~~~~-~~~~D~ 231 (742)
.+.++.+.-||+||..+.+. ...||.+|..|+.+|..+| +.+|||||++++...+.++.+.+++|..+. ...-|+
T Consensus 245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 35678899999999888764 4679999999999999999 999999999999999999999999997444 434469
Q ss_pred cchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCc
Q 004616 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (742)
Q Consensus 232 h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta 311 (742)
|..|.++|.|||+||+||++.++|..+....... ...+...++.+|-.+||+.|+.++++++.||.+|++|+..|+||+
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~-~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~ 403 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVD-KSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA 403 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccch-HHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 9999999999999999999999999887766543 477888889988767999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 004616 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (742)
Q Consensus 312 ~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (742)
.|||+||||+|+|+..... .+...+.++.++++||+||..||..+..
T Consensus 404 sNLa~vfGpnl~w~~~~s~-------------------tl~q~npin~F~~~li~~~~~~f~~~~~ 450 (467)
T KOG4406|consen 404 SNLAVVFGPNLLWAQDESL-------------------TLKQINPINKFTKFLIEHYKKLFTTPEN 450 (467)
T ss_pred ccceeeecccccccccccc-------------------cHHHhccHHHHHHHHHHhhhhccCCCCC
Confidence 9999999999999873210 1234567889999999999999998764
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=1.4e-26 Score=252.35 Aligned_cols=204 Identities=22% Similarity=0.386 Sum_probs=168.1
Q ss_pred CCcccccchHHHhhh-------------CCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcC-----Cc
Q 004616 162 KSLVVGRPILLALED-------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-----KT 223 (742)
Q Consensus 162 ~~~vFG~pL~~ll~~-------------~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-----~~ 223 (742)
...+||+++...+.. ...||.+|.+|+.||.++|+.+.||||++|+..+|++|++.|+++ +.
T Consensus 63 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~ 142 (412)
T KOG2710|consen 63 DGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDV 142 (412)
T ss_pred ceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccc
Confidence 455667766554322 234899999999999999999999999999999999999999998 34
Q ss_pred CCCCCCCccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhcccc
Q 004616 224 EFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSH 303 (742)
Q Consensus 224 ~~~~~~D~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~ 303 (742)
..++++++|+||++||.|||+||+||||.++|+.|+..+......+++..++.++. .||+.|+.+|.+|+.||+.|+.|
T Consensus 143 ~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~-llp~~nr~~l~~ll~fL~~~a~~ 221 (412)
T KOG2710|consen 143 NDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLIY-LLPKCNRDTLEVLLGFLSVVASH 221 (412)
T ss_pred cccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHH-hcCccchhHHHHHHhhhhhhhcc
Confidence 55678899999999999999999999999999999999999887799999998664 99999999999999999999999
Q ss_pred cccc-----------CCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004616 304 AHEN-----------RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (742)
Q Consensus 304 s~~N-----------kMta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (742)
++.| +|++.|||+||+|+++....... +..++.+-. -......+..++.+||+||+.+|
T Consensus 222 s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~----~~~s~~~~~------~~s~~~~i~~~~~~~~~N~e~~f 291 (412)
T KOG2710|consen 222 AEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSH----KELSVTGVA------NESESEAIVNFAQMMIENLEALF 291 (412)
T ss_pred cccccccccccccCcccchhhhhhhhcchhhhcccCCC----ccccccccc------chhhHHHHHHHHHHhhhhHHHhh
Confidence 9999 99999999999999999532111 111111111 01122346678999999999999
Q ss_pred cccc
Q 004616 373 DDES 376 (742)
Q Consensus 373 ~~~~ 376 (742)
..++
T Consensus 292 ~ip~ 295 (412)
T KOG2710|consen 292 QIPP 295 (412)
T ss_pred cCCc
Confidence 9443
No 50
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-26 Score=258.09 Aligned_cols=241 Identities=18% Similarity=0.183 Sum_probs=214.2
Q ss_pred CCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCCCCCCCccchhhhH
Q 004616 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (742)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vA~lL 238 (742)
.+.++.+||.||..+|.+.+ +|..+.+++-+|...|.-++||||..++...++.|++.++.|..+......+|++|.++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~ 154 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVD 154 (741)
T ss_pred CCCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhh
Confidence 45567899999999999877 99999999999999999999999999999999999999999976667778999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhh
Q 004616 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (742)
Q Consensus 239 K~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivf 318 (742)
|.|||.+|..+|..++|+.|+-.....+.+++|.+|+++ ..+||..|..+|++|+..| .|..++..|.|+..|||+|+
T Consensus 155 kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~-~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 155 KDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQ-GDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHH-HhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence 999999999999999999999999999999999999995 4799999999999999999 99999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCCCCCCCCCCc
Q 004616 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSD 398 (742)
Q Consensus 319 aP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~~~~s~s~~~s~~~s~~e~ssd 398 (742)
+|+++++......+++.++ .+++.-+++|||+||-.|||++++.. +..++..+...|+.+|
T Consensus 233 ~p~~l~~~~~~s~e~~k~l----------------n~kv~~l~~flI~nclrifGe~i~~~---fr~~s~~s~~~e~~sd 293 (741)
T KOG4724|consen 233 NPIKLKVLTRTSSEFGKGL----------------NGKVPPLPIFLIVNCLRIFGEDIEGI---FRKSSKQSTFKELKSD 293 (741)
T ss_pred cchhcccccccChhhhccc----------------cCCCCCceeeehhhhHHhhcccccce---eecccccccchhhhhh
Confidence 9999999865544444332 23456689999999999999999654 4555556777888999
Q ss_pred ccccccCCCCCCCCCCCCCCCCCC
Q 004616 399 EENLDMKNNGYHDAQNEVDPESDD 422 (742)
Q Consensus 399 ~~~~~~~d~~~~s~e~e~~~~~d~ 422 (742)
.+..+. |+.||+.+++++...|-
T Consensus 294 ~s~~q~-Ds~yds~~~~~~~~~~~ 316 (741)
T KOG4724|consen 294 LSKGQV-DSHYDSTHVLASILKEY 316 (741)
T ss_pred hccccc-cccccccchhhhhhhhh
Confidence 999998 99999999988876664
No 51
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.91 E-value=2.2e-24 Score=190.14 Aligned_cols=87 Identities=61% Similarity=0.747 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (742)
Q Consensus 614 ~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~-~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l 692 (742)
+||.+.+++|.+|||||.+||+||++|+++|.|||+||++++|++ ++|++||+++++||+|||+||+||++||++|++|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999988 5889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 004616 693 HHQLNQQR 700 (742)
Q Consensus 693 ~~~l~~~~ 700 (742)
+++|++||
T Consensus 81 ~~~l~~q~ 88 (88)
T PF14389_consen 81 YRQLFQQR 88 (88)
T ss_pred HHHHHhcC
Confidence 99999986
No 52
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-24 Score=257.58 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=149.9
Q ss_pred ccccchHHHhh-hCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCCCCCCCccchhhhHHHHh
Q 004616 165 VVGRPILLALE-DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVL 242 (742)
Q Consensus 165 vFG~pL~~ll~-~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vA~lLK~fL 242 (742)
.||..|..++. ....||.++.+|+.+|+.+|+.+|||||++|...+++.|...|+.|. .+.....|+|+++++||.||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999999987 56789999999999999999999999999999999999999999986 55567889999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhh
Q 004616 243 RELPSSPVPASCCTALLEAYKIDRKE------ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (742)
Q Consensus 243 ReLPePLlp~~l~~~~l~~~~~~~~~------~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAi 316 (742)
|+||+|||++.+|+.|+.+.+..... +++..+..++ ..||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVL-EQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHH-HhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 99999999999999999998873333 4888899855 6999999999999999999999999999999999999
Q ss_pred hhcccccCCCC
Q 004616 317 CMAPLLLRPLL 327 (742)
Q Consensus 317 vfaP~Llr~~~ 327 (742)
||||+|+|++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999983
No 53
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=219.34 Aligned_cols=147 Identities=24% Similarity=0.357 Sum_probs=137.2
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC-cCCCCCCCccchhhhHHHHhhhCCCCCCChhhHH
Q 004616 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (742)
Q Consensus 178 ~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~D~h~vA~lLK~fLReLPePLlp~~l~~ 256 (742)
..||.+|..|+..|+++|+.++||||++|....+++|++.|-+|+ .......|+|+||++||.|||+|.+||||..+..
T Consensus 360 PMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~r 439 (604)
T KOG3564|consen 360 PMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRR 439 (604)
T ss_pred ccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHH
Confidence 458999999999999999999999999999999999999999997 4456778999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCC
Q 004616 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (742)
Q Consensus 257 ~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~ 326 (742)
.|+++....+...-+.++-..|. .||..||.+|.|||-|+++|++ +..|||+..|||.+|||+++.-+
T Consensus 440 df~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~ 507 (604)
T KOG3564|consen 440 DFMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHA 507 (604)
T ss_pred HHHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccC
Confidence 99999999988888888888775 7999999999999999999988 77999999999999999999865
No 54
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.72 E-value=2.8e-17 Score=170.22 Aligned_cols=164 Identities=21% Similarity=0.271 Sum_probs=138.6
Q ss_pred CcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCcCC--C--CCCCccchhhh
Q 004616 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--S--ADEDAHVIGDC 237 (742)
Q Consensus 163 ~~vFG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~--~--~~~D~h~vA~l 237 (742)
..+||.+|+.++++. ..-|+++.+|+..|+++|++.-|+|+++|++.+-+-|+..|+.....+ . ...|.++|+++
T Consensus 182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~ 261 (442)
T KOG1452|consen 182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD 261 (442)
T ss_pred ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence 459999999999874 567899999999999999999999999999999999999999864222 2 23588999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccch
Q 004616 238 VKHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (742)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~l~~~~~---~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NL 314 (742)
+|.||||||+|||+...|...+++... .+.+.....+-. |+..||..++..|-.++.||..|..++..|+|++..|
T Consensus 262 ~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~-iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~L 340 (442)
T KOG1452|consen 262 SKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLA-IIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRL 340 (442)
T ss_pred cHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHH-HHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHH
Confidence 999999999999999999888877542 222333334444 4568999999999999999999999999999999999
Q ss_pred hhhhcccccCCCC
Q 004616 315 AACMAPLLLRPLL 327 (742)
Q Consensus 315 AivfaP~Llr~~~ 327 (742)
|.||||.||....
T Consensus 341 s~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 341 SLIFAPLLFFCLD 353 (442)
T ss_pred HHHhhhhHHHhhc
Confidence 9999999987653
No 55
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.72 E-value=6.4e-18 Score=194.08 Aligned_cols=161 Identities=23% Similarity=0.398 Sum_probs=147.3
Q ss_pred CCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcC-CcCC-CCCCCccchhhhHH
Q 004616 162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF-SADEDAHVIGDCVK 239 (742)
Q Consensus 162 ~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~~~~-~~~~D~h~vA~lLK 239 (742)
....||.||..+......||.++.+|+.||++.|+.+|||||++|+......++..|.+. +.++ .-+..+|++|+.+|
T Consensus 914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlk 993 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALK 993 (1100)
T ss_pred hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcch
Confidence 357999999888888889999999999999999999999999999999999999999874 3332 23457999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhc
Q 004616 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (742)
Q Consensus 240 ~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfa 319 (742)
.||-.||+||+|+.+...|.+++.+.+...++..++..+ ..||+.|+.+|+|++.||.+|+.....|.||..||+|||+
T Consensus 994 sffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~-a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~ 1072 (1100)
T KOG4271|consen 994 SFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREAS-AKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFP 1072 (1100)
T ss_pred hhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHh-hhcCchHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999955 6999999999999999999999999999999999999998
Q ss_pred cccc
Q 004616 320 PLLL 323 (742)
Q Consensus 320 P~Ll 323 (742)
|.|+
T Consensus 1073 ~~~~ 1076 (1100)
T KOG4271|consen 1073 TLLM 1076 (1100)
T ss_pred chHH
Confidence 8776
No 56
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.67 E-value=3.5e-16 Score=142.60 Aligned_cols=100 Identities=25% Similarity=0.406 Sum_probs=67.5
Q ss_pred EEeeeeeeecCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCC
Q 004616 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (742)
Q Consensus 21 KeG~L~l~KkG~~-~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~ 99 (742)
|+| |+.|+|+. .++||+|||||+++.|+||+++.+..|.|...+.....++.+.............++|.|...
T Consensus 1 KeG--~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~--- 75 (103)
T cd01251 1 KEG--FMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP--- 75 (103)
T ss_pred Cce--eEEecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeC---
Confidence 689 55688876 699999999999999999999887765542211111111222111000001122236666442
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 100 GRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 100 grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
+|+|+|+|+|++|+.+||.||++++.
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999985
No 57
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.66 E-value=5.8e-16 Score=140.32 Aligned_cols=92 Identities=18% Similarity=0.334 Sum_probs=69.5
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-----CCccEEEE
Q 004616 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-----DKKLLTVL 93 (742)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~-----~Kk~~fvi 93 (742)
|+|+||| .|+|+..+.|++|||||+++.|+||+++.+.. +.+.|+|..+....... .+.++|.|
T Consensus 2 v~k~G~L--~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I 70 (100)
T cd01233 2 VSKKGYL--NFPEETNSGWTRRFVVVRRPYLHIYRSDKDPV---------ERGVINLSTARVEHSEDQAAMVKGPNTFAV 70 (100)
T ss_pred cceeEEE--EeeCCCCCCcEEEEEEEECCEEEEEccCCCcc---------EeeEEEecccEEEEccchhhhcCCCcEEEE
Confidence 7899955 48888889999999999999999999987755 34445555332211111 24567777
Q ss_pred eecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 94 t~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
.+ ..|+|+|+|+|++|+++||.+|+..+
T Consensus 71 ~t---~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 71 CT---KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EC---CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 43 27999999999999999999998765
No 58
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.64 E-value=1.4e-15 Score=154.73 Aligned_cols=185 Identities=16% Similarity=0.207 Sum_probs=143.4
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHH--HHHHhcCCCc--CCccccCCCHHHHHHHHHHhhcCCcC--CCCCCCcc----
Q 004616 164 LVVGRPILLALED-IDGGPSFLEKAL--RFLEKFGTKV--EGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAH---- 232 (742)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~il~~~i--~~L~~~Gl~~--EGIFR~sg~~~~v~~L~~~ld~g~~~--~~~~~D~h---- 232 (742)
.+||+|+.+-+.+ ....|..+.... +++..+.++. -|+||.++...-+...++.++..... .......+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 4899988655444 445677775555 5555554444 79999999888899999888875311 11111122
Q ss_pred -------chhhhHHHHhhhCCCCCCChhhHHHHHHHHh---cCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccc
Q 004616 233 -------VIGDCVKHVLRELPSSPVPASCCTALLEAYK---IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (742)
Q Consensus 233 -------~vA~lLK~fLReLPePLlp~~l~~~~l~~~~---~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~ 302 (742)
+||.+++.||++||+||+|..+|+.++.++. ....+..+++++-+++ .||++||..|+.|+.||+.|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999998888877 3347889999998776 9999999999999999999999
Q ss_pred cc-------cccCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 004616 303 HA-------HENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (742)
Q Consensus 303 ~s-------~~NkMta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (742)
+. ..|+| |++..|+|++++++. +. ..++..+|.|||+|+..||..+
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l~-------------------~~~~~~LV~Fmmd~~~~ifkvP 231 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----LD-------------------EGLADLLVLFLMDHHQDIFKVP 231 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCccc-----cC-------------------HHHHHHHHHHHHHcchhhhcCC
Confidence 94 26777 999999999999872 11 1335689999999999999875
Q ss_pred c
Q 004616 376 S 376 (742)
Q Consensus 376 ~ 376 (742)
.
T Consensus 232 ~ 232 (235)
T cd04405 232 G 232 (235)
T ss_pred c
Confidence 4
No 59
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.61 E-value=2.3e-15 Score=136.08 Aligned_cols=91 Identities=27% Similarity=0.405 Sum_probs=71.6
Q ss_pred EEeeeeeeecCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------CccEE
Q 004616 21 KSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLLT 91 (742)
Q Consensus 21 KeG~L~l~KkG~---~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~------Kk~~f 91 (742)
-+| |+.|+|+ ..++|++|||+|+++.|+||++...+.|. .+.|+|+.+.+|....+ +.+||
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~--------~g~IdL~~~~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPD--------DCSIDLSKIRSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCC--------CceEEcccceEEeeccccccccccCcEE
Confidence 479 7778887 78999999999999999999988665421 24577877777654332 23788
Q ss_pred EEeecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 92 vit~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
.+... .|+|||+|+|++++++||++|+.|+
T Consensus 72 ei~tp---~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFTA---DKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEcC---CceEEEEeCCHHHHHHHHHHHHhhC
Confidence 77543 6999999999999999999998763
No 60
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.59 E-value=8e-15 Score=131.40 Aligned_cols=93 Identities=26% Similarity=0.432 Sum_probs=66.4
Q ss_pred EEeeeeeeec-CC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCC
Q 004616 21 KSGPLFISSK-GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (742)
Q Consensus 21 KeG~L~l~Kk-G~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~ 98 (742)
++|||+.+.+ ++ ..+.|++|||||+++.|+||+++.+..+.+ .++|.++.+... ....+.++|.|.. +
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~----~I~L~~~~v~~~----~~~~k~~~F~I~~--~ 71 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAEG----LIFLSGFTIESA----KEVKKKYAFKVCH--P 71 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccce----EEEccCCEEEEc----hhcCCceEEEECC--C
Confidence 6898875432 22 467999999999999999999988765332 334444333221 1234667787753 3
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHH
Q 004616 99 DGRAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 99 ~grty~fqAdSeeE~~eWi~AL~~a 123 (742)
+.++|+|+|+|++++++||.+|+.|
T Consensus 72 ~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 72 VYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3599999999999999999999854
No 61
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.58 E-value=7.2e-15 Score=134.64 Aligned_cols=94 Identities=23% Similarity=0.262 Sum_probs=65.2
Q ss_pred EEEeeeeeeecC---CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---c------CC
Q 004616 20 FKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E------DK 87 (742)
Q Consensus 20 ~KeG~L~l~KkG---~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~---~------~K 87 (742)
+|+||||.+.+| .++++||+|||||+++.|+||+++.+.. .. +.+.|+|..+..+... . .+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~--~~-----~kG~I~L~~~~~ve~~~~~~~~~~~~~~ 73 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKR--GS-----KKGSIDLSKIKCVETVKPEKNPPIPERF 73 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccc--cC-----cceeEECCcceEEEEecCCcCccccccc
Confidence 579988854322 2356999999999999999999876531 11 2334555544333211 1 23
Q ss_pred ccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004616 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 88 k~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~a 123 (742)
.++|.|.+. +++|||+|+|++|+++||.+|+.+
T Consensus 74 ~~~F~i~t~---~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 74 KYPFQVVHD---EGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CccEEEEeC---CCeEEEEcCCHHHHHHHHHHHHhC
Confidence 567766553 689999999999999999999863
No 62
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.57 E-value=1.3e-14 Score=130.23 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=64.3
Q ss_pred EeeeeeeecCC--CCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecC
Q 004616 22 SGPLFISSKGI--GWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (742)
Q Consensus 22 eG~L~l~KkG~--~~k~WKKRWFVL~~--~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (742)
+|||+ |.|+ ..+.|++|||||++ +.|+||+++.+.. +++.|+|..+..+.....++..|.|.+
T Consensus 2 ~GyL~--K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---------p~G~I~L~~~~~~~~~~~~~~~F~i~t-- 68 (95)
T cd01265 2 CGYLH--KIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK---------PLGRVDLSGAAFTYDPREEKGRFEIHS-- 68 (95)
T ss_pred cccEE--EecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc---------ccceEECCccEEEcCCCCCCCEEEEEc--
Confidence 59665 6554 47999999999984 5899999987765 444566655433222233355666643
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHH
Q 004616 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 98 ~~grty~fqAdSeeE~~eWi~AL~~a 123 (742)
.+|+|+|+|+|++|+.+||.+|+.+
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 3799999999999999999999865
No 63
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.56 E-value=1.5e-14 Score=130.38 Aligned_cols=90 Identities=26% Similarity=0.450 Sum_probs=65.3
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---------cCCcc
Q 004616 21 KSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---------EDKKL 89 (742)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~--~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~---------~~Kk~ 89 (742)
.+||| .|+|...+.|++|||||++ +.|+||+++.+..|.| .|+|..+..+... ..+.+
T Consensus 1 ~~G~L--~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g---------~I~L~~~~~v~~~~~~~~~~~~~~~~~ 69 (101)
T cd01235 1 CEGYL--YKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKG---------CIDLAEVKSVNLAQPGMGAPKHTSRKG 69 (101)
T ss_pred CeEEE--EEcCCCCCCccceEEEEECCCCEEEEecCCCCCccce---------EEEcceeEEEeecCCCCCCCCCCCCce
Confidence 37955 5899889999999999994 4999999987766443 3444433322210 12345
Q ss_pred EEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 90 ~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
+|.+.. .+|+|+|+|++++++.+||.+|+.+|
T Consensus 70 ~f~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 70 FFDLKT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 566543 37999999999999999999999764
No 64
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.54 E-value=4.6e-14 Score=132.88 Aligned_cols=99 Identities=28% Similarity=0.516 Sum_probs=71.3
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCccEEEEeecCC
Q 004616 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDGR 98 (742)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~-~~~Kk~~fvit~~~~ 98 (742)
.|+|||+ |+|+..+.|++|||||+++.|+||+++.+..+ .+.|.|..+..... ...++++|.+.....
T Consensus 1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~~---------~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~ 69 (125)
T cd01252 1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---------RGIIPLENVSIREVEDPSKPFCFELFSPSD 69 (125)
T ss_pred CcEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCCc---------eEEEECCCcEEEEcccCCCCeeEEEECCcc
Confidence 3789665 88888899999999999999999999876552 33344443222111 124567776644221
Q ss_pred ------------------CCceEEEEeCCHHHHHHHHHHHHHHHhhccc
Q 004616 99 ------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (742)
Q Consensus 99 ------------------~grty~fqAdSeeE~~eWi~AL~~ai~~aP~ 129 (742)
..++|+|+|+|++|+.+|+++|+.++...|.
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~~ 118 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNPF 118 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCch
Confidence 2378999999999999999999999975543
No 65
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.53 E-value=3.2e-14 Score=143.32 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhcCCCcCCc---cccCCCHHHHHHHHH-HhhcCC--cCC-------CCCCCccchhhhHHHHhhhCCCC
Q 004616 182 SFLEKALRFLEKFGTKVEGI---LRQAADVEEVDRRVQ-EYEQGK--TEF-------SADEDAHVIGDCVKHVLRELPSS 248 (742)
Q Consensus 182 ~il~~~i~~L~~~Gl~~EGI---FR~sg~~~~v~~L~~-~ld~g~--~~~-------~~~~D~h~vA~lLK~fLReLPeP 248 (742)
.+|..|.+.|+.+|+.+++| ||..++...++.+.. .|+.+. ... ....|||+++++||.|+|.||.+
T Consensus 8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~ 87 (198)
T cd04401 8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS 87 (198)
T ss_pred HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999 999999999998854 556542 111 13369999999999999999999
Q ss_pred CCCh-hhHHHHHHHHhcCCHHHHHHHHHHHHhccC-ChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCC
Q 004616 249 PVPA-SCCTALLEAYKIDRKEARISAMRSAILETF-PEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (742)
Q Consensus 249 Llp~-~l~~~~l~~~~~~~~~~ri~~l~~lIl~~L-P~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~ 326 (742)
+|+. +.|..|...-+..+ .-..+++.+|-..+ |+.|..++..++.+|..|+.|+..|+|+..+|+.+|||.+|..+
T Consensus 88 ~v~~~~~Y~~F~~~E~~~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 88 KVIWWEVYEEFKARERRSN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred ccCCHHHHHHHHHHHHhcC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 9999 99999998644332 12337777664344 78899999999999999999999999999999999999999987
Q ss_pred C
Q 004616 327 L 327 (742)
Q Consensus 327 ~ 327 (742)
.
T Consensus 166 ~ 166 (198)
T cd04401 166 T 166 (198)
T ss_pred C
Confidence 4
No 66
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.53 E-value=4.6e-14 Score=125.83 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=66.7
Q ss_pred EeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCCc
Q 004616 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (742)
Q Consensus 22 eG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr 101 (742)
+| |+.|+|...++|++|||||+++.|.||+++.+..+ . +.+.|+|..+..+ ..+.++..|.|... .++
T Consensus 2 ~G--~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~--~-----~~G~I~L~~~~i~-~~~~~~~~F~i~~~--~~r 69 (91)
T cd01247 2 NG--VLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSH--G-----CRGSIFLKKAIIA-AHEFDENRFDISVN--ENV 69 (91)
T ss_pred ce--EEEEeccccCCCceEEEEEECCEEEEEecCccCcC--C-----CcEEEECcccEEE-cCCCCCCEEEEEeC--CCe
Confidence 69 55699999999999999999999999999876432 1 2344555554332 22334567777532 259
Q ss_pred eEEEEeCCHHHHHHHHHHHHH
Q 004616 102 AFTLKAETSEDLYEWKTALEL 122 (742)
Q Consensus 102 ty~fqAdSeeE~~eWi~AL~~ 122 (742)
+|+|.|++++|+++||.||++
T Consensus 70 ~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 70 VWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999975
No 67
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.52 E-value=7.8e-14 Score=126.92 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=70.0
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecC
Q 004616 19 VFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (742)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WKKRWFVL~-~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (742)
|+|+| |+.|+|...+.|++|||+|+ ++.|+||++++...+. ..++++++.+..+..+.....+.+.|.|....
T Consensus 1 v~k~G--~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEG--WLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEE--EEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 57999 55599999999999999999 7889999887643322 24467778776654433344455677775211
Q ss_pred ---CCCceEEEEeCCHHHHHHHHHHHHHH
Q 004616 98 ---RDGRAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 98 ---~~grty~fqAdSeeE~~eWi~AL~~a 123 (742)
...| +|+|+|++|+++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1234 45799999999999999876
No 68
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.50 E-value=6.5e-14 Score=127.65 Aligned_cols=89 Identities=30% Similarity=0.531 Sum_probs=63.2
Q ss_pred EEeeeeeeecC-------CCCCCcEEEEEEEe-CCeEEEEcCCC-CCCCCCCceeeeeeCcEEcCCCcceeecc---CCc
Q 004616 21 KSGPLFISSKG-------IGWKSWKKRWFILT-RTSLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK 88 (742)
Q Consensus 21 KeG~L~l~KkG-------~~~k~WKKRWFVL~-~~~L~yYKd~~-~~~p~g~~~~~l~L~~I~L~~~~sv~~~~---~Kk 88 (742)
++|||++.--| ..++.||||||||+ ++.|+||++.. ++. +.+.|+|..|..|.... .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~---------p~G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL---------PQGTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc---------cceEEEccceEEEeecccccCCc
Confidence 47977754333 24789999999998 56888887663 444 34457776666654322 234
Q ss_pred cEEEEeecCCCCceEEEEeCCHHHHHHHHHHHH
Q 004616 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALE 121 (742)
Q Consensus 89 ~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~ 121 (742)
++|.|.+. +|+|||.|+|++|+++|+.+|.
T Consensus 72 ~~f~I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 72 FSICILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred cEEEEECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 66766443 7999999999999999999996
No 69
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.48 E-value=1.7e-13 Score=124.37 Aligned_cols=92 Identities=28% Similarity=0.393 Sum_probs=67.1
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--Ccc
Q 004616 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKL 89 (742)
Q Consensus 18 ~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~------~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~--Kk~ 89 (742)
.|+|+|||. |. +.|+||||||++. .|.||++++.....+. .+.+.|.|..|..+....+ +++
T Consensus 1 ~v~k~GyL~--K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~----~p~~vI~L~~c~~v~~~~d~k~~~ 70 (101)
T cd01257 1 DVRKSGYLR--KQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGS----APKRVIPLESCFNINKRADAKHRH 70 (101)
T ss_pred CccEEEEEe--Ee----cCcEeEEEEEecCCCCCCceEEEECChhhccccCC----CceEEEEccceEEEeeccccccCe
Confidence 378999555 54 7899999999988 7999999875321111 1456677777776544322 346
Q ss_pred EEEEeecCCCCceEEEEeCCHHHHHHHHHHHHH
Q 004616 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (742)
Q Consensus 90 ~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ 122 (742)
+|.|.+. .++|+|.|+|++|+++|+.+|..
T Consensus 71 ~f~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 7766442 68999999999999999999964
No 70
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.46 E-value=2.6e-13 Score=124.61 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=61.1
Q ss_pred EeeeeeeecCC----CCCCcEEEEEEEeCCe-------EEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----cc
Q 004616 22 SGPLFISSKGI----GWKSWKKRWFILTRTS-------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RE 85 (742)
Q Consensus 22 eG~L~l~KkG~----~~k~WKKRWFVL~~~~-------L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~-----~~ 85 (742)
+| |+.|+|. ..+.|++|||||+++. |.||+++.+..| .+.|+|..+..+.. ..
T Consensus 2 eG--wL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~---------~g~I~L~~~~~v~~~~~~~~~ 70 (108)
T cd01266 2 EG--WLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKL---------EFVIDLESCSQVDPGLLCTAG 70 (108)
T ss_pred ce--eeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCcc---------ceEEECCccEEEccccccccc
Confidence 79 5557766 3469999999999876 599999877663 33455544332211 11
Q ss_pred --CCccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004616 86 --DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 86 --~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~a 123 (742)
...+.|.+.. ..|+|||.|+|++|+++||.+|+.+
T Consensus 71 ~~~~~~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 71 NCIFGYGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred CcccceEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 1224455543 3799999999999999999999864
No 71
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.41 E-value=1e-12 Score=115.41 Aligned_cols=91 Identities=27% Similarity=0.425 Sum_probs=64.4
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCC
Q 004616 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (742)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~g 100 (742)
++|||+ |++...+.|++|||+|+++.|+||+++.... .. +.+.|.|..+. +.....+.++|.|.. .++
T Consensus 1 ~~G~L~--k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~--~~-----~~~~i~l~~~~-~~~~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLL--KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMR--GK-----PRGTILLSGAV-ISEDDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEE--EecccCCCceeeEEEEECCEEEEEecCccCC--CC-----ceEEEEeceEE-EEECCCCCcEEEEEc--CCC
Confidence 479555 7776778999999999999999999987651 01 22233343322 222233356676653 345
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHH
Q 004616 101 RAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 101 rty~fqAdSeeE~~eWi~AL~~a 123 (742)
++|+|+|++.+|+.+|+.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 72
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.41 E-value=9.6e-13 Score=116.30 Aligned_cols=92 Identities=21% Similarity=0.463 Sum_probs=63.0
Q ss_pred EEeeeeeeecCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCC
Q 004616 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (742)
Q Consensus 21 KeG~L~l~KkG~~-~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~ 99 (742)
|+|||+ |++.. .+.|++|||+|+++.|+||+++.... ......+.+..+.+..... ...++++|.|...
T Consensus 1 k~G~L~--kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~--~~~~~~i~l~~~~v~~~~~---~~~~~~~f~i~~~--- 70 (94)
T cd01250 1 KQGYLY--KRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYD--NAHVKEIDLRRCTVRHNGK---QPDRRFCFEVISP--- 70 (94)
T ss_pred CcceEE--EECCCcCCCceEEEEEEeCCeEEEEcCCcccc--cccceEEeccceEEecCcc---ccCCceEEEEEcC---
Confidence 589666 55433 78899999999999999999987531 1112233444333322111 1125677877643
Q ss_pred CceEEEEeCCHHHHHHHHHHHHH
Q 004616 100 GRAFTLKAETSEDLYEWKTALEL 122 (742)
Q Consensus 100 grty~fqAdSeeE~~eWi~AL~~ 122 (742)
.++|+|+|+|.+++.+|+.||+.
T Consensus 71 ~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 71 TKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred CcEEEEECCCHHHHHHHHHHHhc
Confidence 49999999999999999999974
No 73
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.38 E-value=2e-12 Score=116.72 Aligned_cols=77 Identities=22% Similarity=0.233 Sum_probs=56.3
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCccEEEEeecCCCCceEEEEeCC
Q 004616 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLFPDGRDGRAFTLKAET 109 (742)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~----~Kk~~fvit~~~~~grty~fqAdS 109 (742)
.++||+|||+|+++.|+||+++.. . +.+.|+|..+..+.... .+.++|.|... .++|||+|+|
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~~-~---------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~---~r~~yi~a~s 84 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQC-K---------KSALIKLAAIKGTEPLSDKSFVNVDIITIVCE---DDTMQLQFEA 84 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCCC-c---------eeeeEEccceEEEEEcCCcccCCCceEEEEeC---CCeEEEECCC
Confidence 478999999999999999997653 2 34456666655543222 22345655332 6899999999
Q ss_pred HHHHHHHHHHHHHH
Q 004616 110 SEDLYEWKTALELA 123 (742)
Q Consensus 110 eeE~~eWi~AL~~a 123 (742)
+.|+++||.||+++
T Consensus 85 ~~E~~~Wi~al~k~ 98 (98)
T cd01244 85 PVEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
No 74
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.35 E-value=2.4e-12 Score=116.07 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=64.6
Q ss_pred EeeeeeeecCCC-CCCcEEEEEEEeC----CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc---CCccEEEE
Q 004616 22 SGPLFISSKGIG-WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKKLLTVL 93 (742)
Q Consensus 22 eG~L~l~KkG~~-~k~WKKRWFVL~~----~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~---~Kk~~fvi 93 (742)
.|| +.|+|+. .|.||+|||+|.+ +.|+||++..++.| ++.|++..+....+.+ .+.+||.+
T Consensus 2 ~G~--l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p---------~gli~l~~~~V~~v~ds~~~r~~cFel 70 (98)
T cd01245 2 KGN--LLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKP---------IGLIDLSDAYLYPVHDSLFGRPNCFQI 70 (98)
T ss_pred CCc--cccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCc---------cceeeccccEEEEccccccCCCeEEEE
Confidence 584 4488877 8999999999987 89999999988763 4445555542211112 45689988
Q ss_pred eecCCCCceEEEEeCCHHHHHHHHHHHHH
Q 004616 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (742)
Q Consensus 94 t~~~~~grty~fqAdSeeE~~eWi~AL~~ 122 (742)
.... ...+||++|++ +|+++||.+|++
T Consensus 71 ~~~~-~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 71 VERA-LPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ecCC-CCeEEEEeCCH-HHHHHHHHHHhc
Confidence 6431 12699999999 999999999975
No 75
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.33 E-value=6e-12 Score=117.83 Aligned_cols=97 Identities=23% Similarity=0.289 Sum_probs=66.8
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee------ccCCccEEEE
Q 004616 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------REDKKLLTVL 93 (742)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~------~~~Kk~~fvi 93 (742)
...|||.+....++.++|++|||||+|+.|+||+.+.+.. ... +++.|+|..+..... .-.+++.|.+
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-~~~-----Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i 75 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK-RKG-----PTGLIDLSTCTSSEGASAVRDICARPNTFHL 75 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc-cCC-----ceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence 3579888766556789999999999999999999877632 111 556666666555322 1235555665
Q ss_pred eecCCC----------------Cc-eEEEEeCCHHHHHHHHHHHHH
Q 004616 94 FPDGRD----------------GR-AFTLKAETSEDLYEWKTALEL 122 (742)
Q Consensus 94 t~~~~~----------------gr-ty~fqAdSeeE~~eWi~AL~~ 122 (742)
...... .+ -|+|.|||.+|+++|+.||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 321111 12 267999999999999999975
No 76
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.32 E-value=1.9e-11 Score=108.16 Aligned_cols=101 Identities=23% Similarity=0.428 Sum_probs=72.0
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee--eccCCccEEEEeec
Q 004616 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLFPD 96 (742)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~--~~~~Kk~~fvit~~ 96 (742)
++++|||+ +++...+.|++|||||+++.|+||++.... ....+...+++.++.+....... ......++|.+...
T Consensus 1 ~~~~G~L~--~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~-~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLL--KKSSSRKKWKKRYFVLRDSYLLYYKSSKDK-SDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEE--EEESSSSSEEEEEEEEETTEEEEESSTTTT-TESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEE--EECCCCCCeEEEEEEEECCEEEEEecCccc-cceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 68999766 555667899999999999999999998741 11223445555555554422210 11245577877653
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 97 ~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
.++.|+|+|+|++++..|+.+|+.++
T Consensus 78 --~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 --NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp --TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 24699999999999999999999886
No 77
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.27 E-value=2e-11 Score=111.03 Aligned_cols=85 Identities=27% Similarity=0.398 Sum_probs=56.4
Q ss_pred CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCCceEEEEeCCHHH
Q 004616 33 GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSED 112 (742)
Q Consensus 33 ~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAdSeeE 112 (742)
..+.|++|||||+++.|+||+++..........+.+.+.++.+.... ....++++|.+.. +++++|+|+|+++++
T Consensus 19 ~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~---~~~k~~~~F~l~~--~~~~~~~f~a~s~e~ 93 (104)
T cd01253 19 SNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVAS---DYTKKKHVFRLRL--PDGAEFLFQAPDEEE 93 (104)
T ss_pred CCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecC---CcccCceEEEEEe--cCCCEEEEECCCHHH
Confidence 36789999999999999999987644222111112222222111110 0123456777753 468999999999999
Q ss_pred HHHHHHHHHH
Q 004616 113 LYEWKTALEL 122 (742)
Q Consensus 113 ~~eWi~AL~~ 122 (742)
+.+|+.+|+.
T Consensus 94 ~~~Wi~aL~~ 103 (104)
T cd01253 94 MSSWVRALKS 103 (104)
T ss_pred HHHHHHHHhc
Confidence 9999999974
No 78
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.24 E-value=4.9e-11 Score=111.10 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=67.0
Q ss_pred EEeeeeee-------ecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc-eee-ccCCccE
Q 004616 21 KSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVV-REDKKLL 90 (742)
Q Consensus 21 KeG~L~l~-------KkG-~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~s-v~~-~~~Kk~~ 90 (742)
|+|+|..+ ||. .+.+.|+++||||+|+.|++|||+...... .. ..-....|.|..+.. +.. ...+++.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~-~~-~~~~~~~Isi~~a~~~ia~dy~Kr~~V 79 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKS-LS-ETELKNAISIHHALATRASDYSKKPHV 79 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccc-cc-cccccceEEeccceeEeeccccCCCcE
Confidence 68877754 111 125789999999999999999998642211 00 000112355555442 222 2334455
Q ss_pred EEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 91 fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
|.++ ..+++.|+|||.+.+||+.||.+|+.+++
T Consensus 80 F~L~--~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 80 FRLR--TADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EEEE--cCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6554 45689999999999999999999998875
No 79
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.7e-11 Score=124.50 Aligned_cols=101 Identities=28% Similarity=0.479 Sum_probs=75.1
Q ss_pred eEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecC
Q 004616 19 VFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (742)
Q Consensus 19 V~KeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (742)
..++|||+ |.|+ +.++||+|||+|++++||||.-..+..|.|.. +|.++.+.... ...|.+||.+....
T Consensus 260 pdREGWLl--Klgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrGII----pLeNlsir~Ve----dP~kP~cfEly~ps 329 (395)
T KOG0930|consen 260 PDREGWLL--KLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRGII----PLENLSIREVE----DPKKPNCFELYIPS 329 (395)
T ss_pred ccccceee--eecCCcccchhheeEEeecceeeeeeeccCCCCCcce----eccccceeecc----CCCCCCeEEEecCC
Confidence 35789666 5554 68999999999999999999988887766633 55555544322 24567888775322
Q ss_pred C------------CCc-------eEEEEeCCHHHHHHHHHHHHHHHhhccc
Q 004616 98 R------------DGR-------AFTLKAETSEDLYEWKTALELALAQAPS 129 (742)
Q Consensus 98 ~------------~gr-------ty~fqAdSeeE~~eWi~AL~~ai~~aP~ 129 (742)
. +|| +|-++|.+.+|+.+||.+|+.++...|-
T Consensus 330 ~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pf 380 (395)
T KOG0930|consen 330 NKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPF 380 (395)
T ss_pred CCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcH
Confidence 2 222 6999999999999999999999976553
No 80
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.17 E-value=1e-10 Score=108.37 Aligned_cols=97 Identities=33% Similarity=0.572 Sum_probs=49.1
Q ss_pred EEeeeeeeecCCC-CCCcEEEEEEEe-CCeEEEEcCCCCCCCCC--C--ceeeeeeCcEEcCCCcc-ee--------ecc
Q 004616 21 KSGPLFISSKGIG-WKSWKKRWFILT-RTSLVFFKNDPSALPQR--G--GEVNLTLGGIDLNNSGS-VV--------VRE 85 (742)
Q Consensus 21 KeG~L~l~KkG~~-~k~WKKRWFVL~-~~~L~yYKd~~~~~p~g--~--~~~~l~L~~I~L~~~~s-v~--------~~~ 85 (742)
|+|||| |++.. .+.||+|||+|. ++.|.|||.+.+..... + ....+..+.+....... .. ...
T Consensus 1 k~G~l~--K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLY--KWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEE--E--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEE--EecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 689666 77776 899999999999 99999999932211000 0 00000000011100000 00 001
Q ss_pred CCccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004616 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~a 123 (742)
..+.+.+.++ .++|+|.|++.+|+.+|+.||+.|
T Consensus 79 ~~~~~~i~T~----~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTP----TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-S----S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECC----CcEEEEEECCHHHHHHHHHHHHhC
Confidence 1222223343 699999999999999999999864
No 81
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.17 E-value=4.1e-11 Score=129.06 Aligned_cols=170 Identities=16% Similarity=0.219 Sum_probs=139.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCC------------------------------------
Q 004616 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK------------------------------------ 222 (742)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~------------------------------------ 222 (742)
..|.++...+.+.+.+|+.++||+|.++..+..+.++..-..|+
T Consensus 70 ~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~ 149 (514)
T KOG4370|consen 70 PLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARS 149 (514)
T ss_pred cCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHH
Confidence 46899999999999999999999999887755555443332211
Q ss_pred -----cCCCCCCCccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 004616 223 -----TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297 (742)
Q Consensus 223 -----~~~~~~~D~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L 297 (742)
.....++.|.+||+++|.|||+||++|++.++-..|..++.......+.+.++.++ ..||.+||.++.||+-|+
T Consensus 150 Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~ll-k~Lp~cNyll~swl~lH~ 228 (514)
T KOG4370|consen 150 CIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLL-KILPKCNYLLYSWLNLHK 228 (514)
T ss_pred HhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHH-HhccccchHHHHHHHHHH
Confidence 00112457889999999999999999999999999999998887788888999855 799999999999999999
Q ss_pred hhccccccccCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 004616 298 HTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (742)
Q Consensus 298 ~~V~~~s~~NkMta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (742)
-.|....-.|||+..||+|+..|++--+ +.++..|.-|+..||++.-+
T Consensus 229 d~vi~~e~~~Kln~q~i~i~lspt~q~s--------------------------------~r~l~al~~h~q~lf~~v~l 276 (514)
T KOG4370|consen 229 DKVIEEEYCLKLNKQQIFINLSPTEQES--------------------------------KRGLQALGLHLQTLFEMVRL 276 (514)
T ss_pred HHHHHHHHHhhcchhheeeecchHHHHH--------------------------------HHHHHHHHHHHHHHHhhhee
Confidence 9999999999999999999998886532 24577788888889988776
Q ss_pred cccC
Q 004616 378 HRCS 381 (742)
Q Consensus 378 ~~~s 381 (742)
..|.
T Consensus 277 ~~~~ 280 (514)
T KOG4370|consen 277 MVCF 280 (514)
T ss_pred eeee
Confidence 5543
No 82
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.14 E-value=2.3e-10 Score=103.80 Aligned_cols=92 Identities=22% Similarity=0.396 Sum_probs=68.5
Q ss_pred eecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEe-ecCCCCceEEEE
Q 004616 28 SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF-PDGRDGRAFTLK 106 (742)
Q Consensus 28 ~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit-~~~~~grty~fq 106 (742)
+-+...++.||+|||+|+++.|+|||++.+.. +.+.+.+.+.++.+.+...+ ..+++++.+. |.....++|+|.
T Consensus 11 ~~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~ 85 (106)
T cd01237 11 KPKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLR 85 (106)
T ss_pred CcchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEE
Confidence 34455678899999999999999999987643 55666777778877764322 2345655543 433445899999
Q ss_pred eCCHHHHHHHHHHHHHHH
Q 004616 107 AETSEDLYEWKTALELAL 124 (742)
Q Consensus 107 AdSeeE~~eWi~AL~~ai 124 (742)
|+|++++.+||+|++.|-
T Consensus 86 cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 86 CDNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999998763
No 83
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.08 E-value=1.5e-10 Score=134.75 Aligned_cols=147 Identities=22% Similarity=0.294 Sum_probs=130.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCccc-cCCCHHHHHHHHHHhhcCCcCC--CCCCCccchhhhHHHHhhhCCCC-CCChh
Q 004616 178 DGGPSFLEKALRFLEKFGTKVEGILR-QAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSS-PVPAS 253 (742)
Q Consensus 178 ~~VP~il~~~i~~L~~~Gl~~EGIFR-~sg~~~~v~~L~~~ld~g~~~~--~~~~D~h~vA~lLK~fLReLPeP-Llp~~ 253 (742)
..||.++..|+.+++.+|+..+|||| +++....|..++..+.+|.... ..+.+... |.++|.|+|.|.+| +|+++
T Consensus 216 q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e 294 (640)
T KOG3565|consen 216 QFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFE 294 (640)
T ss_pred ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCccc
Confidence 35999999999999999999999999 8999999999999999984222 22334445 99999999999999 99999
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCCC
Q 004616 254 CCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (742)
Q Consensus 254 l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~ 326 (742)
.+..|+.+....+.-.++..++.++. .+|..+..++.+++.|+...++++..|-|++.|+|+||||.++..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 295 DFGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred cccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 99999999888777777788888664 8999999999999999999999999999999999999999997655
No 84
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.08 E-value=1.1e-09 Score=99.65 Aligned_cols=98 Identities=12% Similarity=0.195 Sum_probs=68.0
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCC-CCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecC
Q 004616 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL-PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (742)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~-p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (742)
.+|+| |+.|.+...+.|+.|||.|-++.|.|++...... ++....-.+.+.++.+.... ....++.|.|...
T Consensus 2 ~ikeG--~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~----~~~~~~~F~I~~~- 74 (101)
T cd01219 2 LLKEG--SVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD----NLERPHSFLVSGK- 74 (101)
T ss_pred cccce--EEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC----CCCcCceEEEecC-
Confidence 57999 6668888888999999999999999998643211 00011112333333333211 1234577887653
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 98 ~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
.++|+|+|+|++|+.+||.||+.++.
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 59999999999999999999999985
No 85
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.04 E-value=1.1e-09 Score=102.88 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=56.0
Q ss_pred CcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--------------cCCccEEEEeecCCCCc
Q 004616 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------------EDKKLLTVLFPDGRDGR 101 (742)
Q Consensus 36 ~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~--------------~~Kk~~fvit~~~~~gr 101 (742)
.|++|||+|+++.|.||+++..+. +++.|.++....+... ..+++.|.|.. ..|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~---------~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R 99 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQ---------ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNR 99 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCc---------eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCc
Confidence 699999999999999999987755 3333444333332211 24456676654 379
Q ss_pred eEEEEeCCHHHHHHHHHHHHHH
Q 004616 102 AFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 102 ty~fqAdSeeE~~eWi~AL~~a 123 (742)
+|.|.|+|+.++++|+++|+.|
T Consensus 100 ~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 100 SLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999999853
No 86
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.01 E-value=2.4e-09 Score=100.23 Aligned_cols=103 Identities=24% Similarity=0.395 Sum_probs=59.0
Q ss_pred EEEeeeeee-------ec-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCC-----CceeeeeeCcEEcCCCcceeec--
Q 004616 20 FKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQR-----GGEVNLTLGGIDLNNSGSVVVR-- 84 (742)
Q Consensus 20 ~KeG~L~l~-------Kk-G~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g-----~~~~~l~L~~I~L~~~~sv~~~-- 84 (742)
.|+|||+.+ || +.+.++|+..|+||+++.|++||+........ ......+...|.|..+......
T Consensus 1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 479988754 11 12467899999999999999999943211100 1111223344666655543322
Q ss_pred cCCccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 85 ~~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
..+++.|.+. ..+|..|+|||.|.++|.+||.+|+.+.
T Consensus 81 ~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 2355777775 4579999999999999999999998764
No 87
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.01 E-value=2e-09 Score=95.13 Aligned_cols=86 Identities=27% Similarity=0.485 Sum_probs=58.3
Q ss_pred eeeeeeecCCCCCCcEEEEEEE--eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCC
Q 004616 23 GPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (742)
Q Consensus 23 G~L~l~KkG~~~k~WKKRWFVL--~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~g 100 (742)
|||. +|+....+.|++|||+| ..+.|.||+++.+.. .-+.|+|..+. +... .+...+.|.. ..
T Consensus 1 G~ll-Kkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---------~rGsi~v~~a~-is~~-~~~~~I~ids---g~ 65 (89)
T PF15409_consen 1 GWLL-KKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---------LRGSIDVSLAV-ISAN-KKSRRIDIDS---GD 65 (89)
T ss_pred Ccce-eeccccCCCceeEEEEEEcCCcEEEEEecCCCCe---------eEeEEEccceE-EEec-CCCCEEEEEc---CC
Confidence 6554 23344678999999999 899999999876542 12234444331 1222 2333344432 36
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHH
Q 004616 101 RAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 101 rty~fqAdSeeE~~eWi~AL~~a 123 (742)
.+|+|.|.++++.+.|+.||+.+
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 89999999999999999999865
No 88
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.96 E-value=6.9e-09 Score=90.03 Aligned_cols=97 Identities=33% Similarity=0.506 Sum_probs=66.0
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCccEEEEe
Q 004616 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLF 94 (742)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~----~Kk~~fvit 94 (742)
++++|||+....+ ....|++|||+|.++.|.||++...... ... ...|.|..+....... ...++|.+.
T Consensus 1 ~~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~~-----~~~i~l~~~~v~~~~~~~~~~~~~~f~l~ 73 (102)
T smart00233 1 VIKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YKP-----KGSIDLSGITVREAPDPDSAKKPHCFEIK 73 (102)
T ss_pred CceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CCC-----ceEEECCcCEEEeCCCCccCCCceEEEEE
Confidence 3689977644332 5678999999999999999998765321 112 2234444432211111 245677776
Q ss_pred ecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 95 PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 95 ~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
.. ++..|+|+|+|++++..|+.+|+.++
T Consensus 74 ~~--~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 74 TA--DRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ec--CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 53 23599999999999999999999875
No 89
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.83 E-value=1.8e-08 Score=89.32 Aligned_cols=99 Identities=33% Similarity=0.458 Sum_probs=73.0
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEee-cC
Q 004616 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (742)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~-~~ 97 (742)
|++.|||-+..-|.....=|.|||||+..+|+||++..+..|++. ++|.++.+.....- -..+++||.++. ..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyi----lpLdnLk~Rdve~g--f~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYM----LPLDGLKLRDIEGG--FMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccce----eeccccEEEeeccc--ccCCCcEEEEEcCcc
Confidence 578897776655554455699999999999999999988876653 47777776654321 135668898863 21
Q ss_pred C----CCceEEEEeCCHHHHHHHHHHHHHH
Q 004616 98 R----DGRAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 98 ~----~grty~fqAdSeeE~~eWi~AL~~a 123 (742)
+ +-++.-|.|++++++..|...+-+|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 1 3467889999999999999887544
No 90
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.77 E-value=8.4e-09 Score=109.24 Aligned_cols=108 Identities=17% Similarity=0.317 Sum_probs=85.1
Q ss_pred CCCCceEEEeeeeeeecCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEE
Q 004616 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (742)
Q Consensus 14 ~~~~~V~KeG~L~l~KkG~~~k~WKKRWFVL~-~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fv 92 (742)
.....|+++| |+.|+|...++|+.|||+|. ++.|.-|+.++....+. ..+|.++.+..|..+.....+...|+
T Consensus 10 ~~~~~vvkEg--WlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~----p~pLNnF~v~~cq~m~~erPrPntFi 83 (516)
T KOG0690|consen 10 MSQEDVVKEG--WLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPT----PEPLNNFMVRDCQTMKTERPRPNTFI 83 (516)
T ss_pred cchhhhHHhh--hHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCC----cccccchhhhhhhhhhccCCCCceEE
Confidence 4556799999 66699999999999999996 57999999876543222 24788899888877666666777777
Q ss_pred E-eecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Q 004616 93 L-FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (742)
Q Consensus 93 i-t~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~a 127 (742)
| +..++.-...+|.+++++++++|+.||+.+....
T Consensus 84 iRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 84 IRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred EEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 6 4556666778899999999999999999987543
No 91
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.75 E-value=5.7e-08 Score=88.04 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=61.0
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCC--eEE--EEcCCCCCCCCCCceeeeeeCcEEcCCCcc-eeeccCCccEEEEee
Q 004616 21 KSGPLFISSKGIGWKSWKKRWFILTRT--SLV--FFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVREDKKLLTVLFP 95 (742)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~--~L~--yYKd~~~~~p~g~~~~~l~L~~I~L~~~~s-v~~~~~Kk~~fvit~ 95 (742)
|+||||++.++.....|.|+||...+. .+. -+...... +.++. + .....+.|..|.. .....+++|||.|+.
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~-~~~g~-v-~~~e~~~l~sc~~r~~~~~dRRFCFei~~ 77 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKT-DMKGA-V-AQDETLTLKSCSRRKTESIDKRFCFDVEV 77 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEeccccccc-ccCcc-c-ccceEEeeeeccccccCCccceeeEeeee
Confidence 589999998777777999999998874 322 22222111 11111 0 0111133333222 123357899999976
Q ss_pred cCCCCceEEEEeCCHHHHHHHHHHHH
Q 004616 96 DGRDGRAFTLKAETSEDLYEWKTALE 121 (742)
Q Consensus 96 ~~~~grty~fqAdSeeE~~eWi~AL~ 121 (742)
.... .+++|||+++.++..||.|+.
T Consensus 78 ~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 78 EEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred cCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 5443 479999999999999999984
No 92
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.71 E-value=5.4e-08 Score=83.55 Aligned_cols=93 Identities=31% Similarity=0.538 Sum_probs=60.9
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--CccEEEEeecCC
Q 004616 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLLTVLFPDGR 98 (742)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~--Kk~~fvit~~~~ 98 (742)
++|||+....+. ...|++|||+|.++.|.+|+...... ... +...+.+........... ..++|.|...
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~-----~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~-- 71 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYK-----PKGSIPLSGAEVEESPDDSGRKNCFEIRTP-- 71 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCC-----CcceEEcCCCEEEECCCcCCCCcEEEEecC--
Confidence 468665333222 37899999999999999998876531 011 222344443221111122 4577877653
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHH
Q 004616 99 DGRAFTLKAETSEDLYEWKTALEL 122 (742)
Q Consensus 99 ~grty~fqAdSeeE~~eWi~AL~~ 122 (742)
+++.|+|+|+|+.++..|+.+|+.
T Consensus 72 ~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 72 DGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHhc
Confidence 249999999999999999999975
No 93
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.70 E-value=1.4e-08 Score=90.65 Aligned_cols=98 Identities=19% Similarity=0.374 Sum_probs=68.0
Q ss_pred EEEeeeeeeecCC-CCCCcEEEEEEEeCCe-----EEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-------ccC
Q 004616 20 FKSGPLFISSKGI-GWKSWKKRWFILTRTS-----LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------RED 86 (742)
Q Consensus 20 ~KeG~L~l~KkG~-~~k~WKKRWFVL~~~~-----L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~-------~~~ 86 (742)
.++|||| +.|+ .++.||||||+|.+-+ +.-|+.++. .+...+-|.|..++-+..... -..
T Consensus 3 k~sGyL~--k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-----~P~e~~qldGyTvDy~~~~~~~~~~~~~~~g 75 (117)
T cd01234 3 KHCGYLY--AIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-----EPTEFIQLDGYTVDYMPESDPDPNSELSLQG 75 (117)
T ss_pred ceeEEEE--eccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC-----CchhheeecceEEeccCCCCCCccccccccc
Confidence 4899766 7776 7999999999999853 334444322 233455678888776654321 123
Q ss_pred CccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Q 004616 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (742)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~a 127 (742)
.+++|-..- -|-...|..+++.|+.-||+|+=++..++
T Consensus 76 g~~ff~avk---egd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 76 GRHFFNAVK---EGDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred chhhhheec---cCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 445554332 27889999999999999999999887654
No 94
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.68 E-value=1.5e-07 Score=81.40 Aligned_cols=95 Identities=25% Similarity=0.454 Sum_probs=62.4
Q ss_pred EeeeeeeecCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCC
Q 004616 22 SGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (742)
Q Consensus 22 eG~L~l~KkG~--~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~ 99 (742)
+|||.....+. ....|++|||+|.+..|.||+++....+.. ..+++..+.+..... .....++|.+......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~~---~~~~~~~F~i~~~~~~ 75 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDPD---GSDDPNCFAIVTKDRG 75 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECCC---CCCCCceEEEECCCCC
Confidence 57554333222 247899999999999999999987654221 123444433222110 0124577777643213
Q ss_pred CceEEEEeCCHHHHHHHHHHHHH
Q 004616 100 GRAFTLKAETSEDLYEWKTALEL 122 (742)
Q Consensus 100 grty~fqAdSeeE~~eWi~AL~~ 122 (742)
.+.|+|+|++.+++..|+.+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhc
Confidence 68999999999999999999975
No 95
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.57 E-value=5.6e-08 Score=110.30 Aligned_cols=167 Identities=15% Similarity=0.164 Sum_probs=139.5
Q ss_pred CCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHH----HHHHHh-hcCCcCCCCCCCccch
Q 004616 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVD----RRVQEY-EQGKTEFSADEDAHVI 234 (742)
Q Consensus 160 ~~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~----~L~~~l-d~g~~~~~~~~D~h~v 234 (742)
..+...||+||+..+.+.+.+|..+......|...+..++++||..-...-+- .....+ ..|.....+...+|++
T Consensus 411 ~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~ta 490 (741)
T KOG4724|consen 411 ELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHTA 490 (741)
T ss_pred hhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchHH
Confidence 34567899999999999999999998888889999999999999854433332 222223 3355555666799999
Q ss_pred hhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH-------HHhccCChhHHHHHHHHHHHHhhcccccccc
Q 004616 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS-------AILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (742)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~ri~~l~~-------lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~N 307 (742)
++++|.|+|.+|..++..+.+.+++++.....++++.++++. +...+.|..+..+....+.-.+.+..++..+
T Consensus 491 asv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~ 570 (741)
T KOG4724|consen 491 ASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEET 570 (741)
T ss_pred HHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccccc
Confidence 999999999999999999999999999998888899999997 1346889998988998888888999999999
Q ss_pred CCCccchhhhhcccccCCC
Q 004616 308 RMTPSAVAACMAPLLLRPL 326 (742)
Q Consensus 308 kMta~NLAivfaP~Llr~~ 326 (742)
.|+..|++.|..|+++.-.
T Consensus 571 s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 571 SNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred cccccccCCCCCccccchh
Confidence 9999999999999998754
No 96
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.56 E-value=6.5e-07 Score=81.23 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=61.1
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCC
Q 004616 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (742)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~ 98 (742)
.+++|+|. |.+. ...|+|+||.+.+..||+.+..... .+......++|.++.+..... ....+++|.|...
T Consensus 2 ~ikEG~L~--K~~~-k~~~~R~~FLFnD~LlY~~~~~~~~-~~y~~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~-- 72 (99)
T cd01220 2 FIRQGCLL--KLSK-KGLQQRMFFLFSDLLLYTSKSPTDQ-NSFRILGHLPLRGMLTEESEH---EWGVPHCFTIFGG-- 72 (99)
T ss_pred eeeEEEEE--EEeC-CCCceEEEEEccceEEEEEeecCCC-ceEEEEEEEEcCceEEeeccC---CcCCceeEEEEcC--
Confidence 68999665 5543 3467777777777666555432211 011122344555555433211 1134578888643
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 99 ~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
.+.|.|+|.|++|+.+|+.+|+.+|.
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999984
No 97
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.52 E-value=3.6e-08 Score=114.88 Aligned_cols=96 Identities=25% Similarity=0.465 Sum_probs=74.5
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCc
Q 004616 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKK 88 (742)
Q Consensus 15 ~~~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~--~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~----~~~Kk 88 (742)
++.+-+.+|||| |+|...|.||.|||||.. +.|+||.+..++.|+| .|++....++.. ..+.+
T Consensus 1630 ~teNr~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG---------~IdLaevesv~~~~~k~vdek 1698 (1732)
T KOG1090|consen 1630 PTENRIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKG---------CIDLAEVESVALIGPKTVDEK 1698 (1732)
T ss_pred cccccCcccchh--hcchhhcccccceeEecCCccceeeecccccccccc---------hhhhhhhhhhcccCccccCcc
Confidence 445566799777 999999999999999986 6999999999888655 355555444332 22445
Q ss_pred cEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 89 ~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
-+|.+... .|+|-|+|.+...+++|+..|+.++
T Consensus 1699 gffdlktt---~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1699 GFFDLKTT---NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred ceeeeehh---hHHHHHHhccchHHHHHHHHHHHhh
Confidence 56766543 7999999999999999999999876
No 98
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.48 E-value=1.6e-06 Score=80.16 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=72.6
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCC--Cceeeeee--CcEEcCCCcc--e--eeccCCccEE
Q 004616 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR--GGEVNLTL--GGIDLNNSGS--V--VVREDKKLLT 91 (742)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g--~~~~~l~L--~~I~L~~~~s--v--~~~~~Kk~~f 91 (742)
..+|||.+.+.++..+.|+++|+||.+..|++|..+.+...+. .....+++ +.+.+...+. + +...+-.+.|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 4689888888877778999999999999999998776543332 23344455 3455544333 1 1123334677
Q ss_pred EEee----cCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004616 92 VLFP----DGRDGRAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 92 vit~----~~~~grty~fqAdSeeE~~eWi~AL~~a 123 (742)
.|+. ....+.+.||-|+++.|.++|+.||...
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 7754 2224689999999999999999999865
No 99
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.44 E-value=4.8e-07 Score=82.54 Aligned_cols=101 Identities=24% Similarity=0.338 Sum_probs=60.1
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCC--CcceeeccCCccEEEEeecCC
Q 004616 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN--SGSVVVREDKKLLTVLFPDGR 98 (742)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~--~~sv~~~~~Kk~~fvit~~~~ 98 (742)
.+|+||++.-| .++|||+||+|++.-|+|+-..+...+..-. ....+.+..|-. .....-.....|+|.+.+...
T Consensus 2 ~~g~LylK~~g--kKsWKk~~f~LR~SGLYy~~Kgksk~srdL~-cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYLKADG--KKSWKKYYFVLRSSGLYYFPKEKTKNTRDLA-CLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEEccCC--CccceEEEEEEeCCeeEEccCCCcCCHHHHH-HHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 37999976544 5899999999999999888544333221100 000011111100 000011123448898865221
Q ss_pred -C---CceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 99 -D---GRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 99 -~---grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
. .-.-+|||+++..+..|+.|||-+-
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 1 2368899999999999999998553
No 100
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.28 E-value=1e-05 Score=73.92 Aligned_cols=102 Identities=13% Similarity=0.273 Sum_probs=68.8
Q ss_pred EEeeeeeeecCCC--CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeC-cEEcCCCcc--ee--eccCCccEEEE
Q 004616 21 KSGPLFISSKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGS--VV--VREDKKLLTVL 93 (742)
Q Consensus 21 KeG~L~l~KkG~~--~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~-~I~L~~~~s--v~--~~~~Kk~~fvi 93 (742)
.+|||-+.+.++. .+.|++.|+||.+..|++|..+.+...+. +...+.++ .+.+...++ +. ...+-.+.|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~-p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENST-PSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCC-cEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 5897766666554 46899999999999999999876543221 33333333 233333322 11 12334467777
Q ss_pred eecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 94 t~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
+.. ..+++.+|-|+++.|.+.|+.+|.+-|
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 653 336999999999999999999998876
No 101
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.18 E-value=1.1e-05 Score=90.37 Aligned_cols=146 Identities=12% Similarity=0.168 Sum_probs=117.7
Q ss_pred cHHHHHHHHHHHhcCCCcCCcc---ccCCCHHHHHHHHHHh-hcCCcC----------CCCCCCccchhhhHHHHhhhCC
Q 004616 181 PSFLEKALRFLEKFGTKVEGIL---RQAADVEEVDRRVQEY-EQGKTE----------FSADEDAHVIGDCVKHVLRELP 246 (742)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIF---R~sg~~~~v~~L~~~l-d~g~~~----------~~~~~D~h~vA~lLK~fLReLP 246 (742)
=.+|..|.+.|..+|+++++|| |-.-+...++.+...| ..+... .....++|+++++||-.+..||
T Consensus 9 ~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp 88 (420)
T PF08101_consen 9 KDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLP 88 (420)
T ss_pred HHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcC
Confidence 3478889999999999999998 6777888888877754 443311 1134699999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCC-hhHHHHHHHHHHHHhhccccccccCCCccchhhhhcccccCC
Q 004616 247 SSPVPASCCTALLEAYKIDRKEARISAMRSAILETFP-EPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (742)
Q Consensus 247 ePLlp~~l~~~~l~~~~~~~~~~ri~~l~~lIl~~LP-~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NLAivfaP~Llr~ 325 (742)
..+|+++.|..|...-+..+ --..++..+|-..|| +.|..++..++.+|..|+.|+..|+|+..-|+-.+|+-+|-.
T Consensus 89 ~gvVgW~~Y~~Fk~~E~~~~--yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 89 GGVVGWDSYEEFKRREREAG--YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred CCccccHHHHHHHHHHhhcC--CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 99999999999987654332 224566666666775 667889999999999999999999999999999999999987
Q ss_pred CCC
Q 004616 326 LLA 328 (742)
Q Consensus 326 ~~~ 328 (742)
...
T Consensus 167 ~~~ 169 (420)
T PF08101_consen 167 PDF 169 (420)
T ss_pred CCc
Confidence 743
No 102
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.17 E-value=1.1e-05 Score=73.75 Aligned_cols=92 Identities=24% Similarity=0.289 Sum_probs=58.4
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCC-eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEE
Q 004616 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (742)
Q Consensus 15 ~~~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~-~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (742)
+.+.|+++|++. |+++.. +|+|||+|+++ .|+|+...... .-+.|.++....+.... .+.|++.
T Consensus 9 ~ge~Il~~g~v~--K~kgl~--~kkR~liLTd~PrL~Yvdp~~~~----------~KGeI~~~~~l~v~~k~-~~~F~I~ 73 (104)
T PF14593_consen 9 PGELILKQGYVK--KRKGLF--AKKRQLILTDGPRLFYVDPKKMV----------LKGEIPWSKELSVEVKS-FKTFFIH 73 (104)
T ss_dssp -T--EEEEEEEE--EEETTE--EEEEEEEEETTTEEEEEETTTTE----------EEEEE--STT-EEEECS-SSEEEEE
T ss_pred CCCeEEEEEEEE--EeeceE--EEEEEEEEccCCEEEEEECCCCe----------ECcEEecCCceEEEEcc-CCEEEEE
Confidence 377899999665 443332 89999999988 66666443321 22457777666654543 3455666
Q ss_pred eecCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 004616 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (742)
Q Consensus 94 t~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~ 126 (742)
++ +|+|+|.. ....+..|+.+|+.+..+
T Consensus 74 tp----~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 74 TP----KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp ET----TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred CC----CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 66 89999988 555688899999998754
No 103
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.08 E-value=4.5e-06 Score=98.08 Aligned_cols=104 Identities=27% Similarity=0.407 Sum_probs=75.0
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------CccE
Q 004616 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLL 90 (742)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~------Kk~~ 90 (742)
-.|.-.|||++-.-+.+...|.||||+|.|+.+.|+|.+.+-..+. +++.|+|+.|+.-..... +..-
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~------Pig~IDLt~CTsq~ie~a~rdicar~nt 1061 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKV------PIGQIDLTKCTSQSIEEARRDICARPNT 1061 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccC------cceeeehhhhhccccccchhhhccCCce
Confidence 3477789999888777788899999999999999999887755222 677889988887322211 2223
Q ss_pred EEEe---ecCCC-------Cc-eEEEEeCCHHHHHHHHHHHHHHHhh
Q 004616 91 TVLF---PDGRD-------GR-AFTLKAETSEDLYEWKTALELALAQ 126 (742)
Q Consensus 91 fvit---~~~~~-------gr-ty~fqAdSeeE~~eWi~AL~~ai~~ 126 (742)
|.|. |...+ .| -..|.|||.++++.|+.+|..++..
T Consensus 1062 Fhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1062 FHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred eEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 3333 10001 12 5789999999999999999998853
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.98 E-value=1.3e-05 Score=92.14 Aligned_cols=115 Identities=28% Similarity=0.405 Sum_probs=76.6
Q ss_pred CCCceEEEeeeeeeecCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-----C
Q 004616 15 ASNTVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-----D 86 (742)
Q Consensus 15 ~~~~V~KeG~L~l~KkG~---~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~-----~ 86 (742)
..+.|.|+|.++...+|. +.+.+|||||.|+...|.|-|++... +...|.+.++..|..-+ .
T Consensus 561 ~~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q----------~~~~Ipl~nI~avEklee~sF~~ 630 (800)
T KOG2059|consen 561 QEPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ----------PIYTIPLSNIRAVEKLEEKSFKM 630 (800)
T ss_pred CCCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC----------cccceeHHHHHHHHHhhhhccCC
Confidence 344566667555443332 24778999999999999999997654 34456666666543222 2
Q ss_pred CccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhcccccccccccccccCCC
Q 004616 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDT 144 (742)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~aP~~a~~~g~~~~f~~~~ 144 (742)
++.+.+|.. .|+.||||.+..|..+|+.+|+++...+++. ...-|.|.|+.+.
T Consensus 631 knv~qVV~~----drtly~Q~~n~vEandWldaL~kvs~~N~~r-Las~HPgaF~s~~ 683 (800)
T KOG2059|consen 631 KNVFQVVHT----DRTLYVQAKNCVEANDWLDALRKVSCCNQNR-LASYHPGAFRSDS 683 (800)
T ss_pred CceEEEEec----CcceeEecCCchHHHHHHHHHHHHhccCcch-hhhcCCcccccCc
Confidence 334445554 4899999999999999999999987533221 1123456777664
No 105
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.89 E-value=1.9e-05 Score=88.25 Aligned_cols=102 Identities=24% Similarity=0.273 Sum_probs=62.9
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-----cCCccEE
Q 004616 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----EDKKLLT 91 (742)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~-----~~Kk~~f 91 (742)
+..-++||||++. .++|+|||.||||+...|||+-..+...|..-. .+..+.-.+......+ ....++|
T Consensus 315 ~~pei~GfL~~K~--dgkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq----~l~~~~~snVYt~i~~rKkyksPTd~~f 388 (622)
T KOG3751|consen 315 SPPEIQGFLYLKE--DGKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQ----CLADLHSSNVYTGIGGRKKYKSPTDYGF 388 (622)
T ss_pred CCccccceeeecc--cccccceeEEEEEecCcceEccCCCCCCchhhH----HHHhcccCceEEeecchhccCCCCCceE
Confidence 3467889999654 446899999999999999998655444432211 1111111111111111 1223666
Q ss_pred EEeecCCC-C--ceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 92 VLFPDGRD-G--RAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 92 vit~~~~~-g--rty~fqAdSeeE~~eWi~AL~~ai 124 (742)
-|.+..-. . -.-+|||+++..+..|+.||+-+-
T Consensus 389 ~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 389 CIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred EeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 66552221 1 256899999999999999998654
No 106
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=9.6e-06 Score=90.86 Aligned_cols=104 Identities=22% Similarity=0.310 Sum_probs=68.5
Q ss_pred CCCCceEEEeeeeee-------ec-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc------EEcCCCc
Q 004616 14 GASNTVFKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG------IDLNNSG 79 (742)
Q Consensus 14 ~~~~~V~KeG~L~l~-------Kk-G~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~------I~L~~~~ 79 (742)
.++-.+.|.|+|-.+ || -.+++.||..|.||+|..||+-||+-.. + . .+.. |.|....
T Consensus 501 dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p---~-k----alse~~lknavsvHHAL 572 (774)
T KOG0932|consen 501 DPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKP---G-K----ALSESDLKNAVSVHHAL 572 (774)
T ss_pred CCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCc---c-c----chhhhhhhhhhhhhhhh
Confidence 456678999977533 11 1347889999999999999998875321 1 1 1222 2222222
Q ss_pred ceeeccCCccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 80 SVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 80 sv~~~~~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
.......+|..||+..++.+.|+|+|||.+.++|+.|+..|.-+.+
T Consensus 573 At~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 573 ATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred cCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 2112233333455555667899999999999999999999998764
No 107
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.66 E-value=0.00044 Score=63.42 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=62.9
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecC
Q 004616 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (742)
Q Consensus 18 ~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (742)
..+++|-|. |.. ++..+.|||.|=.+.|+|=+-.... .+......++|.++.+.+... ....+..|.|...
T Consensus 3 ~li~eG~L~--K~~--rk~~~~R~ffLFnD~LvY~~~~~~~-~~~~~~~~i~L~~~~v~~~~d---~~~~~n~f~I~~~- 73 (104)
T cd01218 3 VLVGEGVLT--KMC--RKKPKQRQFFLFNDILVYGNIVISK-KKYNKQHILPLEGVQVESIED---DGIERNGWIIKTP- 73 (104)
T ss_pred EEEecCcEE--Eee--cCCCceEEEEEecCEEEEEEeecCC-ceeeEeeEEEccceEEEecCC---cccccceEEEecC-
Confidence 578899665 433 4567889999999999885321110 011122344666665543221 1122345655432
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 004616 98 RDGRAFTLKAETSEDLYEWKTALELALAQ 126 (742)
Q Consensus 98 ~~grty~fqAdSeeE~~eWi~AL~~ai~~ 126 (742)
.+.|.++|+|++|..+|+.+|+.++.+
T Consensus 74 --~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 --TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred --CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999864
No 108
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.58 E-value=0.00028 Score=82.72 Aligned_cols=104 Identities=19% Similarity=0.288 Sum_probs=73.5
Q ss_pred CceEEEeeeeeeec-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCccEE
Q 004616 17 NTVFKSGPLFISSK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLT 91 (742)
Q Consensus 17 ~~V~KeG~L~l~Kk-G~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~----~Kk~~f 91 (742)
..+.++||||.-.. +.++..-++|||||.+..|.|||.++... .++++...++..+-|.... ..+.+|
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~y 74 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 74 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEE
Confidence 45789999996644 34456679999999999999999875432 2345555555544443222 123456
Q ss_pred EEeec--CCCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Q 004616 92 VLFPD--GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (742)
Q Consensus 92 vit~~--~~~grty~fqAdSeeE~~eWi~AL~~ai~~a 127 (742)
++... ....+...|.|-+.+|+..|+.||+.++.++
T Consensus 75 vl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 75 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 66543 2334678999999999999999999999865
No 109
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.53 E-value=0.0003 Score=64.85 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=59.2
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-------ccCCccEEE
Q 004616 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------REDKKLLTV 92 (742)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~-------~~~Kk~~fv 92 (742)
+|+|||- --...-+.|||+|++|+...+.+|+++.... ..+.|.|.....|.. .....+||.
T Consensus 1 lkEGWmV--HyT~~d~~rKRhYWrLDsK~Itlf~~e~~sk---------yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE 69 (117)
T cd01239 1 LKEGWMV--HYTSSDNRRKKHYWRLDSKAITLYQEESGSR---------YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE 69 (117)
T ss_pred CccceEE--EEecCccceeeeEEEecCCeEEEEEcCCCCe---------eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence 4789663 2222346799999999999999999987655 233344433333321 124568998
Q ss_pred EeecCCCCceEEEEeCC--------------------HHHHHHHHHHHHHH
Q 004616 93 LFPDGRDGRAFTLKAET--------------------SEDLYEWKTALELA 123 (742)
Q Consensus 93 it~~~~~grty~fqAdS--------------------eeE~~eWi~AL~~a 123 (742)
|.+. ..+||+..+. ....+-|-+||+.|
T Consensus 70 i~T~---~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 70 IRTT---TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEec---CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 8653 6899997752 34568899998753
No 110
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.46 E-value=0.0011 Score=61.53 Aligned_cols=103 Identities=19% Similarity=0.275 Sum_probs=65.8
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCC-CCC--Ccee----eeeeCcEEcCCCcceeeccCCcc
Q 004616 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL-PQR--GGEV----NLTLGGIDLNNSGSVVVREDKKL 89 (742)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~-p~g--~~~~----~l~L~~I~L~~~~sv~~~~~Kk~ 89 (742)
+..+++|-| .|-+...+.++.|+|.|=++.|+|.|...... ..| +... .+++..+.|..... .+.-+.
T Consensus 2 ~elI~EG~L--~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~kn 76 (112)
T cd01261 2 NEFIMEGTL--TRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKN 76 (112)
T ss_pred ccccccCcE--EEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCc
Confidence 457889944 45554456789999999999999998644311 111 1111 13344444443211 111245
Q ss_pred EEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 004616 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (742)
Q Consensus 90 ~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~ 126 (742)
.|.|... +++.|.|+|.|+++..+||++|..++.+
T Consensus 77 aF~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 77 AFEIILK--DGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred eEEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 6766542 3679999999999999999999988753
No 111
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.45 E-value=0.00037 Score=64.07 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=55.8
Q ss_pred CCCCcEEEEEEEeCCeEEEEcCCCCCCC-CCCceeeeeeC--cEEcCCCcce-eeccCCccEEEEeecCCCCceEEEEeC
Q 004616 33 GWKSWKKRWFILTRTSLVFFKNDPSALP-QRGGEVNLTLG--GIDLNNSGSV-VVREDKKLLTVLFPDGRDGRAFTLKAE 108 (742)
Q Consensus 33 ~~k~WKKRWFVL~~~~L~yYKd~~~~~p-~g~~~~~l~L~--~I~L~~~~sv-~~~~~Kk~~fvit~~~~~grty~fqAd 108 (742)
..+.||.++++|++..|++|+..+.... ...+..+.+|. -+.+...... .....+.+||.+-..+. -..+||..+
T Consensus 15 ~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~-vesh~fsVE 93 (108)
T cd01258 15 SSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQ-VENHYLRVE 93 (108)
T ss_pred cccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcCCc-eeeEEEEec
Confidence 4689999999999999999998765321 11111122222 1111111110 00124557888865322 389999999
Q ss_pred CHHHHHHHHHHHHH
Q 004616 109 TSEDLYEWKTALEL 122 (742)
Q Consensus 109 SeeE~~eWi~AL~~ 122 (742)
+..|+..|..||..
T Consensus 94 t~~dL~~W~raiv~ 107 (108)
T cd01258 94 THRDLASWERALVR 107 (108)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999863
No 112
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.30 E-value=0.00052 Score=78.83 Aligned_cols=101 Identities=21% Similarity=0.287 Sum_probs=62.2
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcC-CCCCCCCCCceeeeeeCcEEcCCCcceee--ccCCccEEE
Q 004616 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKN-DPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTV 92 (742)
Q Consensus 16 ~~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd-~~~~~p~g~~~~~l~L~~I~L~~~~sv~~--~~~Kk~~fv 92 (742)
...+.+.|||+ +.+...+ |++|||.+.++.+..... .+........ .+...++..+..+.. ...+.++|.
T Consensus 374 ~sDv~~~G~l~--k~~~~~~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~v~pv~~~~~~~~~~~~~ 446 (478)
T PTZ00267 374 TSDVTHGGYLY--KYSSDMR-WKKRYFYIGNGQLRISLSENPENDGVAPK----SVNLETVNDVFPVPEVYSQKHPNQLV 446 (478)
T ss_pred cCCcccceEEe--ccCCCcc-hhhheEEecCCceEEEeccccccCCCCCc----cccHHHhcccccccHHhcCCCCceEE
Confidence 34678899665 6555444 999999999875555432 2221111111 111223333333211 123457777
Q ss_pred EeecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 93 it~~~~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
+. .+.++.++|.|++++++++|+.+|+.+++
T Consensus 447 i~--~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 447 LW--FNNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EE--ecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 73 34588999999999999999999999874
No 113
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.30 E-value=0.00023 Score=85.68 Aligned_cols=98 Identities=21% Similarity=0.374 Sum_probs=70.0
Q ss_pred ceEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeec
Q 004616 18 TVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (742)
Q Consensus 18 ~V~KeG~L~l~KkG-~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~ 96 (742)
.....|||| ++. ...+.|+||||-..++.+.|+..-..... .+...|..|.+..+.. ..++++||.|+.
T Consensus 273 ~~~~~~~l~--~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~---~~drr~CF~iiS- 342 (785)
T KOG0521|consen 273 GYRMEGYLR--KKASNASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAE---QRDRRFCFEIIS- 342 (785)
T ss_pred hhhhhhhhh--hhcccchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcc---cccceeeEEEec-
Confidence 355566555 443 35789999999999999988876544321 2333455555544322 236889998765
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Q 004616 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (742)
Q Consensus 97 ~~~grty~fqAdSeeE~~eWi~AL~~ai~~a 127 (742)
..++|.|||+++.+...||.+|++.+..+
T Consensus 343 --~tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 343 --PTKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred --CCcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999998643
No 114
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=96.78 E-value=0.00082 Score=77.30 Aligned_cols=96 Identities=16% Similarity=0.253 Sum_probs=64.8
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeec
Q 004616 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (742)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~ 96 (742)
....|+| |..+-+...+.|+|||||++.+.+.||+.+.+........+.+.-+.+.+.. .....|.+...
T Consensus 247 e~~ekSg--y~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~--------~~s~~fqli~~ 316 (936)
T KOG0248|consen 247 ETMEKSG--YWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ--------GAAYAFQLITS 316 (936)
T ss_pred chhhccc--chhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc--------chhHHhhhhhh
Confidence 6678899 6557777788999999999999999999876644222222122222222221 22233433222
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 97 ~~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
...|+|.++++--..+|+..|+.+|.
T Consensus 317 ---t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 ---TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred ---ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 47899999999999999999998885
No 115
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.70 E-value=0.0088 Score=53.05 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=54.7
Q ss_pred eEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCC-CcceeeccCCccEEEEeecC
Q 004616 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVVREDKKLLTVLFPDG 97 (742)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~-~~sv~~~~~Kk~~fvit~~~ 97 (742)
|++.|.++ |+.+. .+++|=++|++.--.+|-|..... .-+.|.++. +..+.... .+.|++.+|
T Consensus 1 Il~~g~v~--Kr~gl--f~kkR~LiLTd~PrL~yvdp~~~~---------~KgeIp~s~~~l~v~~~~-~~~F~I~Tp-- 64 (89)
T cd01262 1 ILKIGAVK--KRKGL--FAKKRQLILTNGPRLIYVDPVKKV---------VKGEIPWSDVELRVEVKN-SSHFFVHTP-- 64 (89)
T ss_pred Cceeeeee--ehhcc--ccceeeEEEecCceEEEEcCCcCe---------EEeEecccccceEEEEec-CccEEEECC--
Confidence 46778554 44332 689999999986555555543322 123355555 33333332 345567676
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 98 ~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
+|+|+|. |.......|+.+|..+.
T Consensus 65 --~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 65 --NKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred --CceEEEE-CCCCCHHHHHHHHHHHh
Confidence 8999995 66688999999998763
No 116
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.48 E-value=0.00056 Score=77.66 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=67.2
Q ss_pred CCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEE-EEe
Q 004616 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT-VLF 94 (742)
Q Consensus 16 ~~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~f-vit 94 (742)
+++.-..||||.-.+. .|+.||||||+|-.-+-|-|.-..-...+..+...+-|.|..++.......-...++|| .+.
T Consensus 461 p~nmkhsgylyaig~n-vwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnavk 539 (1218)
T KOG3543|consen 461 PPNMKHSGYLYAIGRN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVK 539 (1218)
T ss_pred CCccccceeehhhhhH-HHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHhc
Confidence 3456678999954433 48999999999987543333221111111123334467777766533322223344434 443
Q ss_pred ecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Q 004616 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (742)
Q Consensus 95 ~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~a 127 (742)
- |-+..|..+++.++.-|++|+-++.+++
T Consensus 540 e----gdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 540 E----GDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred c----CceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 2 7899999999999999999999999875
No 117
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=96.45 E-value=0.0015 Score=73.80 Aligned_cols=95 Identities=29% Similarity=0.448 Sum_probs=64.0
Q ss_pred EEEeeeeee-ecCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---c-CC--ccE
Q 004616 20 FKSGPLFIS-SKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E-DK--KLL 90 (742)
Q Consensus 20 ~KeG~L~l~-KkG~--~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~---~-~K--k~~ 90 (742)
+-+| -++ |||. ..+.|+.|||.|.+..|.|-+....... ....|++....+|... . .+ +..
T Consensus 736 ~iEG--QLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpKA 805 (851)
T KOG3723|consen 736 LIEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPKA 805 (851)
T ss_pred hhcc--hhhhhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccchh
Confidence 5677 444 4442 2578999999999999999765433221 1123666666664311 1 11 135
Q ss_pred EEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Q 004616 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (742)
Q Consensus 91 fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~a 127 (742)
|.|++- +.+|.|+|.++.-.++|++.|+-+++++
T Consensus 806 FEIFTA---D~T~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 806 FEIFTA---DKTYILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred hheeec---CceEEeecccccCHHHHHHHHHHHHHHH
Confidence 666543 6789999999999999999999998754
No 118
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.25 E-value=0.0062 Score=55.62 Aligned_cols=95 Identities=22% Similarity=0.352 Sum_probs=62.5
Q ss_pred ceEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCccEEEE
Q 004616 18 TVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVL 93 (742)
Q Consensus 18 ~V~KeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~---~~Kk~~fvi 93 (742)
.++..| |+.|-|+ +...|++|||.|-.+.|-+|....... .++ +.+.....|.+. -....|-++
T Consensus 2 DcIvhG--yi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~----~eL------i~M~~i~~V~~e~~~iK~~~CI~i 69 (116)
T cd01240 2 DCIVHG--YIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK----PEL------ITMDQIEDVSVEFQQIKEENCILL 69 (116)
T ss_pred ceEEee--ehhhhCCHHHHHHHHHHheeCcceeeecccccccC----CcE------EEeehhhhcchhheeeccCceEEE
Confidence 467889 5446654 578899999999999999975443322 211 222222222111 112235555
Q ss_pred eecCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 004616 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (742)
Q Consensus 94 t~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~ 126 (742)
.. .+++.+++.++++.+..+|...|+.+...
T Consensus 70 k~--k~~~k~vlt~~d~i~l~qW~~elr~a~r~ 100 (116)
T cd01240 70 KI--RDEKKIVLTNSDEIELKQWKKELRDAHRE 100 (116)
T ss_pred EE--cCCceEEEecCCcHHHHHHHHHHHHHHHH
Confidence 44 34889999999999999999999988753
No 119
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.20 E-value=0.0026 Score=78.63 Aligned_cols=161 Identities=15% Similarity=0.230 Sum_probs=123.9
Q ss_pred ccccchHHH---hhhCCCCcHHHHH-HHHHHHhcCCCcCCccccCCCHHHHHHHHHHhhcCCc---CC----CCCCCccc
Q 004616 165 VVGRPILLA---LEDIDGGPSFLEK-ALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EF----SADEDAHV 233 (742)
Q Consensus 165 vFG~pL~~l---l~~~~~VP~il~~-~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~---~~----~~~~D~h~ 233 (742)
++|.++..+ ..-....|.++.+ +.......|....|+||.++....+...+..++.... .+ ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 888888666 2224457888888 7777778999999999999998888888888887431 11 11335667
Q ss_pred hhhhHHHHhhhC--CCCCCChhhHHHHH----------------HHHhcCCHHHHH-------HHHHHHHhc----cCCh
Q 004616 234 IGDCVKHVLREL--PSSPVPASCCTALL----------------EAYKIDRKEARI-------SAMRSAILE----TFPE 284 (742)
Q Consensus 234 vA~lLK~fLReL--PePLlp~~l~~~~l----------------~~~~~~~~~~ri-------~~l~~lIl~----~LP~ 284 (742)
+.+.++.|+|.+ |.+...+..|..++ .........+++ ..+.. +.. .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~-~~~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSE-LARYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHH-hhccCCCCCCH
Confidence 777999999999 99988888887777 333344445555 56666 445 8999
Q ss_pred hHHHHHHHHHHHHhhcccccccc-CCCc-cchhhhhcc----cccCCC
Q 004616 285 PNRRLLQRILRMMHTISSHAHEN-RMTP-SAVAACMAP----LLLRPL 326 (742)
Q Consensus 285 ~n~~lL~~Ll~~L~~V~~~s~~N-kMta-~NLAivfaP----~Llr~~ 326 (742)
....+|.++..++.+|.....+| -|+. .||..+|++ +++...
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999988888 8888 999999999 555543
No 120
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.16 E-value=0.074 Score=48.26 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=58.6
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecC
Q 004616 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (742)
Q Consensus 18 ~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (742)
..+++|.|...+. =+-|++-|=...|.|-|...+.. .-.-.+.+..+.+.... ....+.|.+....
T Consensus 3 eLlleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y---~~K~~i~~~~l~i~e~~-----~~d~~~F~v~~~~ 68 (97)
T cd01222 3 DLLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKY---QFKAYIPCKNLMLVEHL-----PGEPLCFRVIPFD 68 (97)
T ss_pred ceeeeceEEeecC------CCceEEEEecccEEEEEecCCee---EEEEEEEecceEEecCC-----CCCCcEEEEEecC
Confidence 4678886642221 13477778788888877544321 11112233334443321 1235778887654
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 98 ~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
.+.+.|.|+|.|.++...|+++|+.++
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 445799999999999999999999886
No 121
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.12 E-value=0.081 Score=49.94 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=55.0
Q ss_pred eeeeeecCC---CCCCcEEEEEEEeC--CeEEEEcCCCCCCCCC-CceeeeeeCcEEcCCCcceeecc----CCccEEEE
Q 004616 24 PLFISSKGI---GWKSWKKRWFILTR--TSLVFFKNDPSALPQR-GGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVL 93 (742)
Q Consensus 24 ~L~l~KkG~---~~k~WKKRWFVL~~--~~L~yYKd~~~~~p~g-~~~~~l~L~~I~L~~~~sv~~~~----~Kk~~fvi 93 (742)
|||+-.+++ .....++|||.|.. ..|+|+..++...... ...-.+.+..+..-......+.. +..++++|
T Consensus 14 ~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i 93 (123)
T PF12814_consen 14 WLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIII 93 (123)
T ss_pred EEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEE
Confidence 666433322 23578999999987 5777776543222111 11112222222211111101111 12234444
Q ss_pred eecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 94 t~~~~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
. ..+|+.-|.|.+.++.+-|+.+|+..++
T Consensus 94 ~---t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 94 V---TPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred E---cCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 3 2379999999999999999999998774
No 122
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.12 E-value=0.017 Score=66.87 Aligned_cols=37 Identities=14% Similarity=0.287 Sum_probs=31.1
Q ss_pred CccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
.++.|.+.. ++||.|.|+|.+.+++..||.+|+.+++
T Consensus 454 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 454 AAHVFAVAF--KTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCcEEEEEe--cCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 456666543 5699999999999999999999999985
No 123
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.06 E-value=0.0023 Score=55.78 Aligned_cols=87 Identities=13% Similarity=0.160 Sum_probs=56.7
Q ss_pred EeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee----c---cC-CccEEEE
Q 004616 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----R---ED-KKLLTVL 93 (742)
Q Consensus 22 eG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~----~---~~-Kk~~fvi 93 (742)
+||||...+|. -+|||.+|++..|.+|.++. |++ |..+.+.......+ . .. .-..|-+
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KG------G~~----L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~ 66 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKG------GQY----LCSFQLSSSVVSHPMVNFSQAVPNLGINAFGF 66 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccC------Cce----eeeeehhhhhhhcccccccccCCCCCeeEEEE
Confidence 69999888775 47899999999999997754 332 22233322111000 0 01 1123333
Q ss_pred eecCCCCceEEEEeCCHHHHHHHHHHHHH
Q 004616 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (742)
Q Consensus 94 t~~~~~grty~fqAdSeeE~~eWi~AL~~ 122 (742)
-..+.+++..-+.|++.+.++.|++++.+
T Consensus 67 L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 67 LMYSPSRRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred EEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence 33456788888999999999999999974
No 124
>PLN02866 phospholipase D
Probab=96.05 E-value=0.043 Score=67.38 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=55.6
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCC--cceee------ccCCccEEEEeecCCCCceEEEE
Q 004616 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS--GSVVV------REDKKLLTVLFPDGRDGRAFTLK 106 (742)
Q Consensus 35 k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~--~sv~~------~~~Kk~~fvit~~~~~grty~fq 106 (742)
..|.||||||+.+.|.|.+++.+..+ ..+.+.......... ..+.. ...-++.|.|+. .+|.+.|.
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~---~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~---~~r~l~l~ 289 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKP---LDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTC---GNRSIRLR 289 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCce---eEEEEEecccccccCCCcceeecccccccCCCcceEEEec---CceEEEEE
Confidence 46999999999999999988765442 111111110101110 01100 112345666654 37999999
Q ss_pred eCCHHHHHHHHHHHHHHHhhcc
Q 004616 107 AETSEDLYEWKTALELALAQAP 128 (742)
Q Consensus 107 AdSeeE~~eWi~AL~~ai~~aP 128 (742)
|.+...+.+|+.+|+.+..+.|
T Consensus 290 ~~s~~~~~~w~~ai~~~~~~~~ 311 (1068)
T PLN02866 290 TKSSAKVKDWVAAINDAGLRPP 311 (1068)
T ss_pred ECCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999975443
No 125
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.95 E-value=0.0028 Score=74.59 Aligned_cols=93 Identities=23% Similarity=0.335 Sum_probs=66.2
Q ss_pred EeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCCc
Q 004616 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (742)
Q Consensus 22 eG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr 101 (742)
+|||+ .|-..-..|.|.|.|.+.-+|+|||+..+..+.. +++|-|+.+..... .....|-+.|.+..+ .-
T Consensus 927 sg~Ll--rkfknssgwqkLwvvft~fcl~fyKS~qD~~~la----slPlLgysvs~P~~-~d~i~K~~vfkl~fk---~h 996 (1036)
T KOG3531|consen 927 SGYLL--RKFKNSSGWQKLWVVFTNFCLFFYKSHQDSEPLA----SLPLLGYSVSIPAE-PDPIQKDYVFKLKFK---SH 996 (1036)
T ss_pred hHHHH--HHhhccccceeeeeeecceeeEeecccccccccc----cccccccccCCCCC-CCCcchhheeeeehh---hh
Confidence 46554 3322345799999999999999999988876432 44666766655332 112235577777654 67
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHH
Q 004616 102 AFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 102 ty~fqAdSeeE~~eWi~AL~~ai 124 (742)
+|||.|++.-...+|+..|+.+-
T Consensus 997 vyffraes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 997 VYFFRAESYYTFERWMEVITDAP 1019 (1036)
T ss_pred HHHHhhhhhhhhhhHHHHhhcCC
Confidence 99999999999999999998653
No 126
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=95.35 E-value=0.019 Score=64.23 Aligned_cols=96 Identities=18% Similarity=0.307 Sum_probs=64.1
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeec
Q 004616 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (742)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~ 96 (742)
+-+-..| ++.|.-.....|+-|||+|+.+.|.||+++..+. .|+...+.|....+.. ...+-..|++..-
T Consensus 22 gw~e~~G--~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~--hGcRgsi~l~ka~i~a-----hEfDe~rfdIsvn- 91 (611)
T KOG1739|consen 22 GWVERCG--VLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETE--HGCRGSICLSKAVITA-----HEFDECRFDISVN- 91 (611)
T ss_pred Cchhhcc--eeeeeecccccccceEEEEcccchhhhhhhhhhh--cccceeeEeccCCccc-----ccchhheeeeEec-
Confidence 3344555 4446555667899999999999999999987654 3454444443333322 1122223344332
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 97 ~~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
..++++.|.+...++.|+.+|.-.-.
T Consensus 92 ---~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 92 ---DNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred ---cceeeehhcCcHHHHHHHHHHHHHhh
Confidence 67899999999999999999986654
No 127
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.16 E-value=0.29 Score=45.27 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=56.7
Q ss_pred eEEEeeeeeeecCCCCCCc-EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-C--CccEEEEe
Q 004616 19 VFKSGPLFISSKGIGWKSW-KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-D--KKLLTVLF 94 (742)
Q Consensus 19 V~KeG~L~l~KkG~~~k~W-KKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~-~--Kk~~fvit 94 (742)
.+++|=|..... .+.| +.|+|-|=++.|+|.|...-..+...-...+.+..+.|.+...-.... . -+..|.|.
T Consensus 2 li~~Gel~~~s~---~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 2 LFLQGEATRQKQ---NKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred ceEeeeEEEEec---ccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 467785543321 1223 578999999999999864321111111122334444443322110000 0 13456665
Q ss_pred ecCCCCceEEEEeCCHHHHHHHHHHHHH
Q 004616 95 PDGRDGRAFTLKAETSEDLYEWKTALEL 122 (742)
Q Consensus 95 ~~~~~grty~fqAdSeeE~~eWi~AL~~ 122 (742)
.. ..+..|.|+|.|+++...|+.||..
T Consensus 79 ~~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SE-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred Ec-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 43 3367899999999999999999964
No 128
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.66 E-value=0.15 Score=45.73 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=58.1
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCC---CCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEe
Q 004616 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP---SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (742)
Q Consensus 18 ~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~---~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit 94 (742)
..+++|+|.....|. =|.|-|-|=++.|+|=+-.. ....+......++|..+.+.... |.+.
T Consensus 2 ~Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~-----------~~~~ 66 (96)
T cd01228 2 QLVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP-----------FRIH 66 (96)
T ss_pred cccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh-----------hhcc
Confidence 357889776444443 36677777777777765431 11123344556666666654421 2221
Q ss_pred ecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 95 PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 95 ~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
.+++++|+|.|.|..|..+|+.+|+...
T Consensus 67 --~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 67 --NKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred --ccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 3458999999999999999999998653
No 129
>PF15406 PH_6: Pleckstrin homology domain
Probab=94.42 E-value=0.086 Score=48.35 Aligned_cols=69 Identities=20% Similarity=0.362 Sum_probs=46.3
Q ss_pred EEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCCceEEEEeCCHHHHHHHHHH
Q 004616 40 RWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTA 119 (742)
Q Consensus 40 RWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~A 119 (742)
-|..-+|.-|.||....+... +-+.|.|.....+......+|.|.+ . |..+.|+|.+..|++.||.+
T Consensus 42 AwAsqTGKGLLF~~K~~dka~--------P~GiinLadase~~~~g~~kF~f~~--~---G~khtF~A~s~aERD~Wv~~ 108 (112)
T PF15406_consen 42 AWASQTGKGLLFFSKAEDKAS--------PSGIINLADASEPEKDGSNKFHFKI--K---GHKHTFEAASAAERDNWVAQ 108 (112)
T ss_pred hhhhccCceEEEEeccccccC--------CcceEehhhccccccCCCceEEEEe--C---CceeeeecCCHHHhccHHHH
Confidence 466667777777764333221 3445777666555444445544444 2 89999999999999999999
Q ss_pred HH
Q 004616 120 LE 121 (742)
Q Consensus 120 L~ 121 (742)
|.
T Consensus 109 lk 110 (112)
T PF15406_consen 109 LK 110 (112)
T ss_pred hh
Confidence 86
No 130
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.80 E-value=0.013 Score=66.83 Aligned_cols=175 Identities=19% Similarity=0.187 Sum_probs=111.8
Q ss_pred CcccccchHHHhh-hCCCCcH-HHHHHHHHHHh---cC--CCcCCccccCCCHHHHHHHHHHhhcCCcCCCCCCCccchh
Q 004616 163 SLVVGRPILLALE-DIDGGPS-FLEKALRFLEK---FG--TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIG 235 (742)
Q Consensus 163 ~~vFG~pL~~ll~-~~~~VP~-il~~~i~~L~~---~G--l~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vA 235 (742)
...||.-|..+.- -++.||. .+.+||..+.. ++ +...|.|++..+.... .+...|....|+.++.
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S 278 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES 278 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence 3445554433222 2457887 77777766665 22 3345666665433211 1224455567999999
Q ss_pred hhHHHHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhhccccccccCCCccch
Q 004616 236 DCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (742)
Q Consensus 236 ~lLK~fLReLPePLlp~~l~~~~l~~~~~~-~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMta~NL 314 (742)
.+++.|.+.+|.|+.. .++... ...+.+...+- ....+++.|+.+-+.|..||.....-. .++
T Consensus 279 ~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~-~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~ 342 (670)
T KOG1449|consen 279 WDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRF-SLETMSEAHYRTAKFLSEHFTRLCKSK-------KSL 342 (670)
T ss_pred cccChhhhhcCCCCcc--------cccccccCcccceeeecc-ccccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence 9999999999999544 222222 23344555554 446899999999999999998877633 899
Q ss_pred hhhhcccccCCCCCCCCcccc-ccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 004616 315 AACMAPLLLRPLLAGECELED-DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 315 AivfaP~Llr~~~~~~~~~ed-~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
+|++.|+++|++.. ++. ++-..++. +....+..+.|++....|..+.
T Consensus 343 ~I~~~~~~~r~ppt----L~~~~~h~~~~~-----------~~~~~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 343 AIVWSPNLFRPPPT----LNGADTHLLSGL-----------NVHTAICDFFIENSESLFVNDI 390 (670)
T ss_pred eeecCCCCCCCCCC----CCchhhhhcccC-----------Ccceeecccchhhhhhhhhccc
Confidence 99999999998842 221 11111111 2233567788999999988776
No 131
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.77 E-value=0.014 Score=66.53 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=51.5
Q ss_pred HHHHhhccccccccCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 004616 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (742)
Q Consensus 294 l~~L~~V~~~s~~NkMta~NLAivfaP~Llr~~~~~~~~~ed~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~ 373 (742)
++||..|+.++....|.+.|||+||||+|+|.+.......+ ..-|+ +++....-..-+++|++.|-+.||.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs---~~~Gd------aAf~avq~qsvV~EfilnhvDvlF~ 71 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCS---HLWGD------AAFSAVQAQSVVSEFILNHVDVLFL 71 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhc---ccccc------HHHHHHHhhhhhhhhcccccceecC
Confidence 36899999999999999999999999999997732111111 01122 2223333334577999999999998
Q ss_pred ccc
Q 004616 374 DES 376 (742)
Q Consensus 374 ~~~ 376 (742)
...
T Consensus 72 ~~a 74 (670)
T KOG1449|consen 72 PTA 74 (670)
T ss_pred CcC
Confidence 655
No 132
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.66 E-value=1.6 Score=40.83 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=49.9
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCC--CceEEEEeCCHHHHHH
Q 004616 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD--GRAFTLKAETSEDLYE 115 (742)
Q Consensus 38 KKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~--grty~fqAdSeeE~~e 115 (742)
+.|-+-|=...|+|-|-..... ..+....+--..|.++...-....++..+.|.+...++. ..+|.+||.|.+..+.
T Consensus 25 ~eR~vFLFe~~lvfsk~~~~~~-~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~ 103 (114)
T cd01232 25 RERRVFLFEQSIIFAKEVKKKK-QFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQE 103 (114)
T ss_pred ceeEEEEeeceEEEEEEeccCC-CCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHH
Confidence 5566666667777776543321 111111111122333222111111233456777665443 5799999999999999
Q ss_pred HHHHHHHHHh
Q 004616 116 WKTALELALA 125 (742)
Q Consensus 116 Wi~AL~~ai~ 125 (742)
|+..|+.++.
T Consensus 104 W~~~I~~il~ 113 (114)
T cd01232 104 WVKKIREILQ 113 (114)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 133
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.51 E-value=0.68 Score=43.95 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=47.9
Q ss_pred CcEEEEEEEeCCeEEEEcCCCCCCCCCCceeee----eeCcEEcCCCcceee-------ccCCccEEEEeec-CCCC--c
Q 004616 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVV-------REDKKLLTVLFPD-GRDG--R 101 (742)
Q Consensus 36 ~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l----~L~~I~L~~~~sv~~-------~~~Kk~~fvit~~-~~~g--r 101 (742)
+-+.+|+.|=.+.|.|-|.+. +..+.+ +...+.+..+..... ....++.|.++.. ...| +
T Consensus 26 ~~~~vylfLFnDlLl~tkkK~------~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~ 99 (125)
T cd01221 26 KARTIYLFLFNDLLLITKKKL------GSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQA 99 (125)
T ss_pred cCCcEEEEEecceEEEEEecC------CCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEE
Confidence 346789999988888887542 222222 233344433221100 0123566777532 1223 5
Q ss_pred eEEEEeCCHHHHHHHHHHHH
Q 004616 102 AFTLKAETSEDLYEWKTALE 121 (742)
Q Consensus 102 ty~fqAdSeeE~~eWi~AL~ 121 (742)
.+.|+|+|+.|+.+||+||.
T Consensus 100 el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 100 ELLLSADSQSDRERWLSALA 119 (125)
T ss_pred EEEEECCCHHHHHHHHHhcC
Confidence 79999999999999999984
No 134
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=93.37 E-value=0.1 Score=59.98 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=68.7
Q ss_pred CCCCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce-eeccCCccEE
Q 004616 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLT 91 (742)
Q Consensus 13 ~~~~~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv-~~~~~Kk~~f 91 (742)
-.+++.++|+|.|+ |......+-..||++|=+..+.|.+-.. ..+ +..... --.+.+...... .......+.|
T Consensus 266 V~PsreLiKEG~l~--Kis~k~~~~qeRylfLFNd~~lyc~~r~-~~~--~~k~~~-r~~~s~~~~~v~~~~~~~~~~tF 339 (623)
T KOG4424|consen 266 VSPSRELIKEGQLQ--KISAKNGTTQERYLFLFNDILLYCKPRK-RLP--GSKYEV-RARCSISHMQVQEDDNEELPHTF 339 (623)
T ss_pred cCcHHHHhhcccee--eeeccCCCcceeEEEEehhHHHhhhhhh-hcc--cceecc-ceeeccCcchhcccccccCCceE
Confidence 35778899999665 6555556789999999998888887654 221 111110 011222221110 1122334678
Q ss_pred EEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 004616 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (742)
Q Consensus 92 vit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~ 126 (742)
+++.. .|..-|+|.|+++..+|+++|+.+|..
T Consensus 340 ~~~G~---~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 340 ILTGK---KRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred EEecc---cceEEeecCchhhHHHHHHHHHHHHHH
Confidence 88753 689999999999999999999999963
No 135
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.90 E-value=0.76 Score=51.65 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=84.6
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 004616 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM 664 (742)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~ 664 (742)
..||+.|..+..+|. ||+.=+..|..++.+|+....+-.+|.--|++++++|++|+++...|-..+.--.+ .+
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~------kl 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRG------KL 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH------HH
Confidence 478888888877775 67777788899999999999999999999999999999999999998876542222 12
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (742)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (742)
-..-..+=+.+-..++.|..|++||.+|-+.|--|..-
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 22222333456678888899999998888777665554
No 136
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.43 E-value=1.2 Score=40.56 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=35.7
Q ss_pred eeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 65 EVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 65 ~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
.-..+|..+.+.+.... ..-++.+.++++ .+.+.+||+++++..+|+..|+++.
T Consensus 45 ~~~~~L~~i~V~ni~D~--~~~kNafki~t~----~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 45 ESTYSLNSVAVVNVKDR--ENAKKVLKLLIF----PESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EEEEehHHeEEEecCCC--cCcCceEEEEeC----CccEEEEeCCHHHHHHHHHHHHHHh
Confidence 33445665555443221 112444444454 5899999999999999999999886
No 137
>PF15404 PH_4: Pleckstrin homology domain
Probab=92.43 E-value=0.59 Score=47.29 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=27.1
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCC
Q 004616 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP 56 (742)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~ 56 (742)
++|+||.+++ ....|+++|+||..+.|+.|..-.
T Consensus 1 ~sG~LY~K~~--khs~F~~~~vvL~~G~Li~f~~~~ 34 (185)
T PF15404_consen 1 MSGYLYQKPR--KHSTFKKYFVVLIPGFLILFQLFK 34 (185)
T ss_pred CCceeeecCC--CCCCceEEEEEEeCCEEEEEEEEe
Confidence 4799995443 346899999999999999998743
No 138
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=91.86 E-value=0.91 Score=41.27 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=50.1
Q ss_pred CCCCcEEEEEEEeC----CeEEEEcC--CCCCCCCCCceeeeeeC-cEEcCCCcceeeccCCccEEEEeecCCCCceEEE
Q 004616 33 GWKSWKKRWFILTR----TSLVFFKN--DPSALPQRGGEVNLTLG-GIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTL 105 (742)
Q Consensus 33 ~~k~WKKRWFVL~~----~~L~yYKd--~~~~~p~g~~~~~l~L~-~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~f 105 (742)
+...|.|.-.+|+. ..|.||-- ++...|+-+. ... ...+..++.... .++...|++.. .++..|.|
T Consensus 17 ~~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v----~C~~I~EvR~tt~LEm-PD~~nTFvLK~--~~~~eyI~ 89 (107)
T cd01231 17 SGARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQV----ACSSISEVRECTRLEM-PDNLYTFVLKV--DDNTDIIF 89 (107)
T ss_pred CccccceeeEEEEecCCCceEEEEccCCCCCCCCcccc----chhhhhhhhhcccccc-cCcccEEEEEe--cCCceEEE
Confidence 34679887777753 24555544 4444433221 111 123333333323 34556788865 35679999
Q ss_pred EeCCHHHHHHHHHHHHH
Q 004616 106 KAETSEDLYEWKTALEL 122 (742)
Q Consensus 106 qAdSeeE~~eWi~AL~~ 122 (742)
.|.++++++.|+..|+.
T Consensus 90 Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 90 EVGDEQQLNSWLAELRY 106 (107)
T ss_pred EcCCHHHHHHHHHHHhc
Confidence 99999999999999974
No 139
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.48 E-value=1.2 Score=41.39 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=57.4
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCCceEEEEeCCHHHHHHH
Q 004616 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (742)
Q Consensus 37 WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAdSeeE~~eW 116 (742)
=..||++|=.+.|.+....+... -..-...++|.++.++.... .+..++.|.|+. +.--...+.|.+.+|+.+|
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd---~e~~~~aFeI~G--~li~~i~v~C~~~~e~~~W 101 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLED---TEALKNAFEISG--PLIERIVVVCNNPQDAQEW 101 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHh---ccCccceEEEec--cCcCcEEEEeCCHHHHHHH
Confidence 36799999999999887654322 01123456888888875322 234457788863 3345788999999999999
Q ss_pred HHHHHHHH
Q 004616 117 KTALELAL 124 (742)
Q Consensus 117 i~AL~~ai 124 (742)
+..|++.+
T Consensus 102 l~hL~~~~ 109 (111)
T cd01225 102 VELLNANN 109 (111)
T ss_pred HHHHHhhc
Confidence 99998754
No 140
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.25 E-value=6 Score=41.69 Aligned_cols=70 Identities=33% Similarity=0.376 Sum_probs=52.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (742)
.+||.|..-+..|.++|...-+.=..+|+-+++-+. ++...-..|+++|.+++..|++.+.=..-++..+
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999987555555556665554444 4455566688999999999998888777777777
No 141
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.22 E-value=1.9 Score=46.02 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=68.2
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhh-----hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004616 579 EEELAIQRLEITKNDLRHRIAKEAR-----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (742)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~ 653 (742)
+-...|+++-..+..|+.+|.+... .....+.. .......+.+-..|+..+.++++++++.+.--..+...+..
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQL-KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888999999987665 22222221 33344455556667777777777777777766666666643
Q ss_pred CCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 654 SSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (742)
Q Consensus 654 ~~~~~~----~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (742)
....+. .-........++..++...+..+..|+.++..-+.++.++-..
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 103 RRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 0011122233344444455555555555555555555555443
No 142
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=89.58 E-value=2.4 Score=43.20 Aligned_cols=71 Identities=37% Similarity=0.405 Sum_probs=48.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH----HHHHHHH
Q 004616 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEAD 681 (742)
Q Consensus 606 ~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~e----ia~~E~~ 681 (742)
+.||+.-++|-+--+.-|..||+|+..|+-|=.. ....+. +.|..=.+..+++|.| |-.||+|
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~------------~~~~~~-~~~~~~~~~L~~~LrEkEErILaLEad 79 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQQRQ------------GNSSGS-SSPSNNASNLKELLREKEERILALEAD 79 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------CCCCCC-CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888899999999888765321 111111 1223334455666665 7788999
Q ss_pred HHHHHHHH
Q 004616 682 VARLKQKV 689 (742)
Q Consensus 682 v~~le~~~ 689 (742)
+++.||+-
T Consensus 80 ~~kWEqkY 87 (205)
T PF12240_consen 80 MTKWEQKY 87 (205)
T ss_pred HHHHHHHH
Confidence 99999875
No 143
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.18 E-value=4.2 Score=39.11 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=49.5
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCCceEEEEeCCHHHHHHHH
Q 004616 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (742)
Q Consensus 38 KKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi 117 (742)
+.|..-|=...+.|.|-..............--..|.++...-.....+....|.+..... ..+|.+||.|.+..+.|+
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKAAWV 108 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHHHHH
Confidence 4677777777777877553221111111111112233322111101112245577765443 469999999999999999
Q ss_pred HHHHHHHh
Q 004616 118 TALELALA 125 (742)
Q Consensus 118 ~AL~~ai~ 125 (742)
..|+.++.
T Consensus 109 ~~I~~iL~ 116 (133)
T cd01227 109 NEIRKVLT 116 (133)
T ss_pred HHHHHHHH
Confidence 99999985
No 144
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=89.08 E-value=0.19 Score=59.92 Aligned_cols=95 Identities=23% Similarity=0.376 Sum_probs=65.7
Q ss_pred CCCceEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEE
Q 004616 15 ASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (742)
Q Consensus 15 ~~~~V~KeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (742)
+...+++.||| .|-.. +...+.|||..+.+..+.||...++..+++. |.+.....+ .......+-++
T Consensus 83 ~isp~~~~gwl--dk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~py~k~~---------i~va~is~v-~~~gd~kfevi 150 (1186)
T KOG1117|consen 83 PISPVIKSGWL--DKLSPQGEYPFQKRWVKFDGSSLEYFLSPKDPYSKGP---------IPVAAISAV-RNFGDNKFEVI 150 (1186)
T ss_pred ccCchhhcchh--hccCcCcccccCccceecCCCCccccCCCCCCCCCCc---------eeeehhhhh-hhccCceEEEE
Confidence 34458999944 44432 2355799999999999999999887764442 334333322 11222233444
Q ss_pred eecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 94 t~~~~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
+. .|+|.|.++++.++..|+..++.++.
T Consensus 151 tn----~r~fvfr~e~~~~r~~w~s~l~s~~~ 178 (1186)
T KOG1117|consen 151 TN----QRTFVFRQESEGERFIWVSPLQSALK 178 (1186)
T ss_pred ec----ceEEEEecCCcccceeeechhhhcch
Confidence 43 79999999999999999999998863
No 145
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.08 E-value=6.6 Score=45.76 Aligned_cols=103 Identities=22% Similarity=0.351 Sum_probs=76.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004616 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLER------RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (742)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~ 653 (742)
++..-.||+.-.+.+-..|+-=-+.|+.|=..+.. |.+.+++++..|+-||-++|.=+.+=...-.+
T Consensus 219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~------- 291 (581)
T KOG0995|consen 219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH------- 291 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH-------
Confidence 44445677777777777776666666666666543 44578889999999998888655544444443
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 654 SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (742)
Q Consensus 654 ~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (742)
++.+...|=.||+..|+|+-.|.+++.+|+.++--|
T Consensus 292 ----------~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 292 ----------MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666788999999999999999999999988766
No 146
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=88.80 E-value=0.74 Score=50.08 Aligned_cols=103 Identities=16% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCCCceEEEeeeeeeec--C-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCc-----ceeecc
Q 004616 14 GASNTVFKSGPLFISSK--G-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG-----SVVVRE 85 (742)
Q Consensus 14 ~~~~~V~KeG~L~l~Kk--G-~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~-----sv~~~~ 85 (742)
..+..|+.-| |...+ + ..+..++.||..|+|..++.|..++-.. ..++.......+...- .....+
T Consensus 276 ~v~~qivyMG--Wvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t----~dw~rAe~ty~vye~mfki~Kdsd~~D 349 (505)
T KOG3549|consen 276 AVGEQIVYMG--WVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNT----ADWSRAEVTYKVYETMFKIVKDSDTVD 349 (505)
T ss_pred CccceEEEee--eccccccCcccccccCceeEEecCcEEEEEcCCCcch----hhhhhhhhhHHHHHHHHHHhccccccc
Confidence 4567788999 54443 2 3467789999999999999998764322 1111111111111100 001124
Q ss_pred CCccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
.+++||.+.. ..|...||..+...|+.+|-.+.+.++
T Consensus 350 ~R~~CF~~qs--~~ge~~yfsVEl~seLa~wE~sfq~At 386 (505)
T KOG3549|consen 350 SRQHCFLLQS--SGGEPRYFSVELRSELARWENSFQAAT 386 (505)
T ss_pred cccceEEEEc--CCCCceEEEEehhhHHHHHHHHHhhHH
Confidence 5778998865 357899999999999999999998876
No 147
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.75 E-value=5.4 Score=43.63 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=63.9
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhcCCCCCC
Q 004616 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA--------ERDLRAALEVGLSMSSGQF 658 (742)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~--------e~~~~~~Le~~l~~~~~~~ 658 (742)
.++...+|+.|..+|+-.+-.+|++|+||++.+.+=...|+.++.+|+.|++. =..+++||+.+=+ .-.+
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n--~~~~ 289 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN--LEAL 289 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc--CcCC
Confidence 56677789999999999999999999999998766555555555555544432 1234456776544 1112
Q ss_pred C-----CC-CCCChhHHHHHHHHHHHHHHHHHHHH
Q 004616 659 S-----SS-RGMDSKTRAELEEIALAEADVARLKQ 687 (742)
Q Consensus 659 ~-----~~-~~~p~~~~~ll~eia~~E~~v~~le~ 687 (742)
+ .+ ..|=.++.+.++.=...|..|-.|++
T Consensus 290 ~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~ 324 (365)
T KOG2391|consen 290 DIDEAIECTAPLYKQILECYALDLAIEDAIYSLGK 324 (365)
T ss_pred CchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2 11 23444555566666667777777776
No 148
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=88.09 E-value=0.074 Score=61.71 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=41.6
Q ss_pred eEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc
Q 004616 19 VFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS 80 (742)
Q Consensus 19 V~KeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~s 80 (742)
-..+||||+.|..+ ....|+|.||||.+..|++|....... .+..+.|-.+.|.....
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~----~e~~i~l~~~~i~~a~e 620 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRA----AESVIKLPLFTISVAEE 620 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhc----hhheeeccchhhhhHHH
Confidence 35678888777653 256799999999999999999987765 34445555565554443
No 149
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.48 E-value=3.8 Score=38.45 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=50.7
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceee----eeeCcEEcCCC--cceee-ccCCccEEEEeecCCCCceEEEEeCC
Q 004616 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVN----LTLGGIDLNNS--GSVVV-REDKKLLTVLFPDGRDGRAFTLKAET 109 (742)
Q Consensus 37 WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~----l~L~~I~L~~~--~sv~~-~~~Kk~~fvit~~~~~grty~fqAdS 109 (742)
=+.||.-|=+..+.+.|...... +.++.. +.+..+.|... ..... ...-++.|.+... .....|.|+|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Kt 96 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKT 96 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCC
Confidence 35888888888888888654421 111111 12223223222 11110 0112245666542 223679999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 004616 110 SEDLYEWKTALELALAQ 126 (742)
Q Consensus 110 eeE~~eWi~AL~~ai~~ 126 (742)
+++...||.+|..|+..
T Consensus 97 ee~K~kWm~al~~a~sn 113 (116)
T cd01223 97 EHLRKKWLKALEMAMSN 113 (116)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999863
No 150
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=87.45 E-value=0.41 Score=57.89 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=56.1
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCC
Q 004616 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (742)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~ 99 (742)
-.+|||+ |.....+.|.+|||+|.++.+.||++.......-.+ .+.+... . .......-+... .+.
T Consensus 78 ~~~g~l~--k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~-------~~~~~~a--~-i~~~~~~~~~~~-~~~- 143 (799)
T KOG1737|consen 78 SLEGILL--KWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGG-------GINLVTA--W-IQNGERMDICSV-DGS- 143 (799)
T ss_pred cccceee--ccccccCCcccceEEecCcceeeeccCCccccCCCC-------ccccccc--c-cccCCCcccchh-hcc-
Confidence 3457444 777778999999999999999999887554322111 2222110 0 011111112221 122
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 004616 100 GRAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 100 grty~fqAdSeeE~~eWi~AL~~a 123 (742)
...|+..+-+....+.|+.+++-+
T Consensus 144 ~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred cchhhhhhhHHHhhcchhhhhhhc
Confidence 467889999999999999999865
No 151
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=86.83 E-value=1.8 Score=36.90 Aligned_cols=67 Identities=27% Similarity=0.323 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 622 ~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (742)
++.-+++-+..|+++|+.|..++..+|+.+..-.. -|. + .-++.+|.....-.+++..|+.+|....
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~---~~~------~---~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRLYSD---EKK------K---KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC------c---cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568899999999999999999999998752111 010 1 3456677888888899999999886654
No 152
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=85.61 E-value=2.2 Score=40.98 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=25.7
Q ss_pred cEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004616 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (742)
Q Consensus 89 ~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~a 123 (742)
+.|.+..-|+.+..|+|+|+|..++++|++.|..+
T Consensus 100 yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 100 YPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 56666666777778999999999999999999864
No 153
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.02 E-value=1.1e+02 Score=37.33 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=15.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (742)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (742)
+-...++|=.||-.|+.|+.-.|+++..|..++
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555444444444444444444
No 154
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.88 E-value=9.5 Score=39.03 Aligned_cols=69 Identities=26% Similarity=0.396 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (742)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~-~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~ 691 (742)
|..|.+.|+.++..|+....--..|+.=+......+. --..--.++.++-+++..++.+|..|.+++.+
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666555555555544432222221 00112234455555555555555555555543
No 155
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.14 E-value=12 Score=40.68 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=39.1
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE----------RRLALEQDVSRLQEQLQAERDLRAALEV 649 (742)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~r~~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (742)
...|..-.+|+..|..-++.++.|+..+.+-+....+ .|..||.++..|++.|+.+.-.|..|+.
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 3455556667777777777777777665544443322 2445566666666666666666665555
No 156
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.03 E-value=22 Score=36.70 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
+-++|-+|++.+..++..|+.+..+++.....+..
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf 174 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777788888888888888888877665554
No 157
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.96 E-value=65 Score=34.84 Aligned_cols=113 Identities=25% Similarity=0.276 Sum_probs=70.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC
Q 004616 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE---RRLALEQDVSRLQEQLQAERDLRAALEVGLS-MSSG 656 (742)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~-~~~~ 656 (742)
+..+..|...-.+++.|+.++.+.+..++..+..-|+.+.+ .|..||..|..|+++|.--+.+|..=-..|. ...+
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~ 153 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQS 153 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 45567777778899999999999999999999887776654 4778999999999999988888876223332 2213
Q ss_pred CCCCC--CCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 004616 657 QFSSS--RGMDSKTRAELEEI-ALAEADVARLKQKVAELH 693 (742)
Q Consensus 657 ~~~~~--~~~p~~~~~ll~ei-a~~E~~v~~le~~~~~l~ 693 (742)
..+.. .+-.+.....|.+| +-.|..+.+-.+++...+
T Consensus 154 ~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y 193 (312)
T PF00038_consen 154 SVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWY 193 (312)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhc
Confidence 22221 22233345555666 344555554444444333
No 158
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=78.56 E-value=1 Score=50.93 Aligned_cols=103 Identities=16% Similarity=-0.018 Sum_probs=57.3
Q ss_pred CceEEEeeeeeeecCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC---C
Q 004616 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED---K 87 (742)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~------~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~---K 87 (742)
...+|.|++++.....+.+.|.++|++|..+ .|.+|..+.... .+.+...+ -+.+.++++.++..... .
T Consensus 6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~-~~~~~~~~-rR~~~ls~~~S~e~~~~~~~~ 83 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRES-VRWPYRCL-RRYGYLSNLFSFESGRRCQTG 83 (429)
T ss_pred CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCcc-cccchhcc-eeeEeeccceeeecccccccC
Confidence 4678999999888888889999999999876 334444332211 11111111 14566666655432211 1
Q ss_pred ccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 88 k~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
...+.++.... .. +|-++..-+...|+++|....
T Consensus 84 ~~i~~~f~~~a-~e--~~~~~q~l~~~~w~~~i~~~~ 117 (429)
T KOG4047|consen 84 PGITAFFCDRA-EE--LFNMLQDLMQANWINAIEEPA 117 (429)
T ss_pred CCceEEEecch-HH--HHHHHHHHHhhhhhhhhhhcc
Confidence 11122211111 11 555666667777999997654
No 159
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=76.91 E-value=1.1 Score=52.59 Aligned_cols=89 Identities=7% Similarity=-0.123 Sum_probs=57.0
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCC
Q 004616 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (742)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~ 99 (742)
.+.| +++++-+..++|+.+||++.++.+.||+++-+.. .+... .-.++...-..- ...++. .++
T Consensus 260 s~~k--~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~-s~~~~---~~~~~s~~fqli---~~t~~~--~~~----- 323 (936)
T KOG0248|consen 260 SRIK--SLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIR-SVTKL---EQQGAAYAFQLI---TSTDKM--NFM----- 323 (936)
T ss_pred HHHH--HHHhHheeeccceEEEEEcCCCccccccCccccc-cccee---eccchhHHhhhh---hhceeE--EEe-----
Confidence 4556 4556667789999999999999999999987532 22211 111222221100 011221 111
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHHH
Q 004616 100 GRAFTLKAETSEDLYEWKTALELAL 124 (742)
Q Consensus 100 grty~fqAdSeeE~~eWi~AL~~ai 124 (742)
.-+|++-+|...-+..|++++....
T Consensus 324 ~~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 324 TESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred ccChhhhhhhHHHHHHHHHHHhccc
Confidence 2578999999999999999998754
No 160
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=76.41 E-value=0.058 Score=68.45 Aligned_cols=105 Identities=23% Similarity=0.274 Sum_probs=66.0
Q ss_pred CCceEEEeeeeeeec------CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCC----CCceeeeeeCcEEcCCCcceeecc
Q 004616 16 SNTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQ----RGGEVNLTLGGIDLNNSGSVVVRE 85 (742)
Q Consensus 16 ~~~V~KeG~L~l~Kk------G~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~----g~~~~~l~L~~I~L~~~~sv~~~~ 85 (742)
......+|+||.+.- ...-++|.+.||++..+.+.||+|.+..... ..++..+.+....+. ......
T Consensus 2296 ~~w~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~---~a~dy~ 2372 (2473)
T KOG0517|consen 2296 SAWRQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIE---VASDYH 2372 (2473)
T ss_pred cHHHHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHH---HHHHHH
Confidence 334578899974311 1235789999999999999999997654321 011111111111111 011112
Q ss_pred CCccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 86 ~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
.|++.|.+. ..+|..|.|+|.++++|..|+.++....+
T Consensus 2373 kkk~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2373 KKKHVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred HHhHhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 355556654 46799999999999999999998887765
No 161
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=76.05 E-value=2 Score=47.60 Aligned_cols=104 Identities=23% Similarity=0.263 Sum_probs=62.0
Q ss_pred ceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcC-----CCcce--eeccCCccE
Q 004616 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN-----NSGSV--VVREDKKLL 90 (742)
Q Consensus 18 ~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~-----~~~sv--~~~~~Kk~~ 90 (742)
.|-+-|||--+-.+.+...|+..+++|+...|.+|.+-+.+. ..+..+.....+. ...+- .+...-...
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~k----eaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~ls 366 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTK----EAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLS 366 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhH----HHhcChhhhhhhhhhhheecCCCCCCCcCCceEE
Confidence 566779555444466788999999999999999998765433 1112222222221 11110 000111123
Q ss_pred EEEeecCCCC-ceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 91 TVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 91 fvit~~~~~g-rty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
|.+-+.++.| .+|+|.++|..|+-.|...|-.-.+
T Consensus 367 Fa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch 402 (506)
T KOG3551|consen 367 FATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCH 402 (506)
T ss_pred EEEecccccceEEEEEEeccHHHHHHHHHHHHHHHH
Confidence 4443333333 6999999999999999988855433
No 162
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.87 E-value=2e+02 Score=35.25 Aligned_cols=10 Identities=50% Similarity=0.454 Sum_probs=5.6
Q ss_pred HHHHHHhhhh
Q 004616 581 ELAIQRLEIT 590 (742)
Q Consensus 581 ~~~~~~~~~~ 590 (742)
..+|.|||+.
T Consensus 417 ~~a~~rLE~d 426 (697)
T PF09726_consen 417 PDAISRLEAD 426 (697)
T ss_pred hHHHHHHHHH
Confidence 3456666654
No 163
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=75.49 E-value=0.046 Score=59.72 Aligned_cols=120 Identities=24% Similarity=0.349 Sum_probs=79.4
Q ss_pred HHHHhhhhhHHHHH---HHHHHhhhhhhhhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 004616 583 AIQRLEITKNDLRH---RIAKEARGNAILQASLERRKQALHERRLA---LEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (742)
Q Consensus 583 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~ 656 (742)
..+-|++.+.+|+- +-....-+||.|-..++.+++++++|..+ |-.--.+|..+|-.|+.--+.|-.+-++-.|
T Consensus 419 yleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtG 498 (593)
T KOG4807|consen 419 YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTG 498 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCC
Confidence 34556677777664 45667789999988999999999988644 5555667888999998755555444333222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcC
Q 004616 657 QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ-QRQHHYG 705 (742)
Q Consensus 657 ~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~-~~~~~~~ 705 (742)
-++...-+..-.|.| +-+-|.||-+|+|+|..|+..|.- .|...+.
T Consensus 499 -splaqgkdayELEVL--LRVKEsEiQYLKqEissLkDELQtalrDKkya 545 (593)
T KOG4807|consen 499 -SPLAQGKDAYELEVL--LRVKESEIQYLKQEISSLKDELQTALRDKKYA 545 (593)
T ss_pred -CccccCcchhhHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 112222333333333 456799999999999999998864 3444443
No 164
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=75.23 E-value=88 Score=34.29 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004616 630 VSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM-DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (742)
Q Consensus 630 V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~-p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~ 703 (742)
|-+|++|..+=..=.+.|+.-|..+.+..+.|..+ +..... .-..-+..-|..|-+.|..|+.+|.....++
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~--Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~ 252 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEEN--DTAERLSSHIRSLRQEVSRLRQQLAASQQEH 252 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777665555667777776654433333211 000000 0112244445555555555555555444433
No 165
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.20 E-value=1.3e+02 Score=38.43 Aligned_cols=79 Identities=30% Similarity=0.398 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH-HHHHHHHHHHH----
Q 004616 611 SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE-IALAEADVARL---- 685 (742)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~e-ia~~E~~v~~l---- 685 (742)
.++++-..+.-++..|+-+|.++-.+++....-=..+|.++. +..-+.+....+.+ |+-++-+|-.|
T Consensus 810 ~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~--------k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~ 881 (1293)
T KOG0996|consen 810 KLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL--------KKVVDKKRLKELEEQIEELKKEVEELQEKA 881 (1293)
T ss_pred HHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455555555666666666655555554555565533 34456666676666 77777777777
Q ss_pred --HHHHHHHHHHHH
Q 004616 686 --KQKVAELHHQLN 697 (742)
Q Consensus 686 --e~~~~~l~~~l~ 697 (742)
++++..||..+-
T Consensus 882 ~Kk~~i~~lq~~i~ 895 (1293)
T KOG0996|consen 882 AKKARIKELQNKID 895 (1293)
T ss_pred hHHHHHHHHHHHHH
Confidence 366666665543
No 166
>PF15411 PH_10: Pleckstrin homology domain
Probab=74.14 E-value=43 Score=31.45 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=55.2
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCC---------CCceeeeeeC-cEEcCCCcceeecc-CCccEEEEeec-CCCCce
Q 004616 35 KSWKKRWFILTRTSLVFFKNDPSALPQ---------RGGEVNLTLG-GIDLNNSGSVVVRE-DKKLLTVLFPD-GRDGRA 102 (742)
Q Consensus 35 k~WKKRWFVL~~~~L~yYKd~~~~~p~---------g~~~~~l~L~-~I~L~~~~sv~~~~-~Kk~~fvit~~-~~~grt 102 (742)
..|+-+.+-|=...|.++|........ +.....+.|. .|-+.+...+.... ...+...|.-. ...--.
T Consensus 19 ~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~~~L~i~w~~d~e~~~ 98 (116)
T PF15411_consen 19 DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGSYSLQISWKGDPELEN 98 (116)
T ss_pred CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCceEEEEEEcCCCCCce
Confidence 569999999999999999986554331 1122233343 46666666654333 22333444332 123458
Q ss_pred EEEEeCCHHHHHHHHHHH
Q 004616 103 FTLKAETSEDLYEWKTAL 120 (742)
Q Consensus 103 y~fqAdSeeE~~eWi~AL 120 (742)
|+|...+++.+..|-.+|
T Consensus 99 F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 99 FTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred EEEEeCCHHHHHHHHhhC
Confidence 999999999999998875
No 167
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=73.03 E-value=19 Score=40.41 Aligned_cols=69 Identities=30% Similarity=0.321 Sum_probs=46.0
Q ss_pred HHHhhhhhHHHHHHHHHHh------------------------hhhhhhhHhHHHHHHHH-----------HHHHH---H
Q 004616 584 IQRLEITKNDLRHRIAKEA------------------------RGNAILQASLERRKQAL-----------HERRL---A 625 (742)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~-----------~~~r~---~ 625 (742)
|++||..|.-||.+...+| .-=.+||+-++|-|..+ .+||. .
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888888888873322 12235788887766543 22222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004616 626 LEQDVSRLQEQLQAERDLRAALEVGLS 652 (742)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~ 652 (742)
.+.+-.+||+.|+.|..-|.||=+-|.
T Consensus 290 ~reen~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677888888888888888877664
No 168
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.79 E-value=16 Score=36.11 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (742)
Q Consensus 621 ~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (742)
+--.+|..++..|+++|..-..-...|+.-|..-.. -+.+.+|..+|+.|+.++..|+.++..|+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~--------~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSS--------EPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335556666777777777666666666655431111 112478999999999999999999988874
No 169
>PRK11637 AmiB activator; Provisional
Probab=72.72 E-value=25 Score=40.08 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004616 670 AELEEIALAEADVARLKQKVAELHHQLNQQRQHHYG 705 (742)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~ 705 (742)
++=.+|+.++.+|..++.++..++..|.+.....|.
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666555554443
No 170
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.59 E-value=1e+02 Score=32.76 Aligned_cols=112 Identities=23% Similarity=0.354 Sum_probs=63.4
Q ss_pred HhhhhhHHHHHHHHH----HhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 004616 586 RLEITKNDLRHRIAK----EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (742)
Q Consensus 586 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (742)
+.|..+.+|..|+-. -.+.+..|..+ +.+-..|.+.+..+|.+-..|+..-.+=......|+.--.+... -=
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~-e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~e---Ek 77 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEES-EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEE---EK 77 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 345556666666522 22344445444 33444555555555555555555443333333333332221100 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
..|..++.+.-.+|+.|+.++.+.+..+..|+.+|...|.
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999999999999887766
No 171
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=72.00 E-value=54 Score=38.66 Aligned_cols=97 Identities=27% Similarity=0.391 Sum_probs=60.3
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhH-----------------HHHHHHHHHHHH-------HHHHHHHHHH
Q 004616 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASL-----------------ERRKQALHERRL-------ALEQDVSRLQ 634 (742)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~r~-------~Le~~V~~L~ 634 (742)
.=|..|-||+.-=.+|+.+..|-.|+=+..+..+ .+|...+.+--. .|..++.+++
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4566788888888888888876655443333322 344444433322 2555666677
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 635 EQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (742)
Q Consensus 635 ~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (742)
++|++|+.+|.-++. +.+.||+||+-+... =++.|.+++..
T Consensus 190 ~~ld~Etllr~d~~n-----------------~~q~Lleel~f~~~~---h~~eI~e~~~~ 230 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQN-----------------RVQTLLEELAFLKRI---HKQEIEEERRK 230 (546)
T ss_pred HHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHhc---cHHHHHHHHHH
Confidence 788888888887765 567889888877643 33444444443
No 172
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=71.91 E-value=29 Score=33.77 Aligned_cols=105 Identities=15% Similarity=0.289 Sum_probs=61.5
Q ss_pred eEEEeeeeeeecCCCCCCcE----EEEEEEeCCeEEEEcCCCCCCCCCCc---------------eeeeeeCcEEcCCCc
Q 004616 19 VFKSGPLFISSKGIGWKSWK----KRWFILTRTSLVFFKNDPSALPQRGG---------------EVNLTLGGIDLNNSG 79 (742)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WK----KRWFVL~~~~L~yYKd~~~~~p~g~~---------------~~~l~L~~I~L~~~~ 79 (742)
....|..|+---- ....|| -.-||.+.-...+||+....+.+-++ ..-++.....+....
T Consensus 28 L~h~~v~WLNp~~-slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n 106 (160)
T cd01255 28 LYHGGVEWLNPSD-SLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASS 106 (160)
T ss_pred hhhcceeeecCCh-hhccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCC
Confidence 4455556654221 122344 46789999988999876543322211 011222222222211
Q ss_pred ceeeccCCccEEEEee-----cCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 004616 80 SVVVREDKKLLTVLFP-----DGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (742)
Q Consensus 80 sv~~~~~Kk~~fvit~-----~~~~grty~fqAdSeeE~~eWi~AL~~ai~~ 126 (742)
. ...+.++.+.++. .++..++|.||+.+++..+..++.|+..+..
T Consensus 107 ~--ad~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 107 A--ADMESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred C--cCcccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 1 1234556665543 3446789999999999999999999999863
No 173
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=71.81 E-value=68 Score=43.34 Aligned_cols=78 Identities=19% Similarity=0.351 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC---CC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS---SS-RGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (742)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~---~~-~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (742)
.+...+.-||++|..|+..|.+|...|.=+|++...-.|.+. -+ .-+-.+..+|-.+++..|.++..|..++.+++
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 445557789999999999999999999999965543334332 11 11333444455555555666555555555554
Q ss_pred HH
Q 004616 694 HQ 695 (742)
Q Consensus 694 ~~ 695 (742)
..
T Consensus 1090 ~~ 1091 (1930)
T KOG0161|consen 1090 AE 1091 (1930)
T ss_pred HH
Confidence 43
No 174
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.60 E-value=59 Score=35.84 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004616 617 QALHERRLALEQDVSRLQEQLQ 638 (742)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~ 638 (742)
..+++++.+|+.++.+|+....
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666655543
No 175
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.18 E-value=21 Score=30.49 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=40.4
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 004616 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~r~~Le~~V~~L~~~L~~ 639 (742)
++||+.+..||.++.--.+-|++-|..+.+=.. ..++.=..|..+|..|+++|++
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998888888888876533222 1133334588999999998765
No 176
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.34 E-value=0.57 Score=53.83 Aligned_cols=87 Identities=16% Similarity=0.347 Sum_probs=51.8
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCCceEEEEeCCHHHH
Q 004616 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (742)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAdSeeE~ 113 (742)
.|..+|.||..+.-.+.+|++..+.. +.+...+.+.||.+++....+.... ..|.+.+....-..+|+.|+++...
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~--~i~l~~~~~~~msEi~LRCd~E~QY 447 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKY--AIKLLVPTAEGMSEIWLRCDNEQQY 447 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccc--eEEEEeecCCccceeEEecCCHHHH
Confidence 56667777766655444444432221 2223344666777766433222222 3344444333457899999999999
Q ss_pred HHHHHHHHHHH
Q 004616 114 YEWKTALELAL 124 (742)
Q Consensus 114 ~eWi~AL~~ai 124 (742)
-+||.|.+-|-
T Consensus 448 A~WMAaCrLAS 458 (664)
T KOG3727|consen 448 ARWMAACRLAS 458 (664)
T ss_pred HHHHHHhhHhh
Confidence 99999998654
No 177
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.59 E-value=63 Score=39.02 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=50.7
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 004616 584 IQRLEITKNDLRHRIAKEARGNAILQASL---ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (742)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~ 660 (742)
+++|...-.++..+-.++...+..+ ..+ +++...+......++++...++.+++.-..-...|+..+....|
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~~~~~~-~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG---- 258 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSELPSSIL-SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG---- 258 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 4455444445555555555443322 222 33333444455556666666666666555555555555543322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 661 ~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (742)
.++.+...+|.++..++++....+.++.+..
T Consensus 259 ---------~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 259 ---------DLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555444444433
No 178
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.20 E-value=41 Score=31.04 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.9
Q ss_pred cEEEEeecCCC--CceEEEEeCCHHHHHHHHHHHHH
Q 004616 89 LLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALEL 122 (742)
Q Consensus 89 ~~fvit~~~~~--grty~fqAdSeeE~~eWi~AL~~ 122 (742)
.||.|.. +.+ -++..|.|++.++++.|+..|+.
T Consensus 80 ~~fTIiy-~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 80 RCFTIVY-GTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cEEEEEE-CCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 5666654 333 57899999999999999999874
No 179
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=69.07 E-value=21 Score=47.19 Aligned_cols=90 Identities=20% Similarity=0.267 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004616 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLKQK 688 (742)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~-~~~~~~p~~~~~ll~eia~~E~~v~~le~~ 688 (742)
-+-..+|..+..+-..|+.++.+|++.|+++..=.+-|..-++...-.. ..=..+=.....++++|+.++.++..||++
T Consensus 794 ~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k 873 (1822)
T KOG4674|consen 794 ESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIK 873 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566677788888999999999999999876666665554321100 111223345678899999999999999999
Q ss_pred HHHHHHHHHHH
Q 004616 689 VAELHHQLNQQ 699 (742)
Q Consensus 689 ~~~l~~~l~~~ 699 (742)
+.+|..+|.-.
T Consensus 874 ~~eL~k~l~~~ 884 (1822)
T KOG4674|consen 874 LSELEKRLKSA 884 (1822)
T ss_pred HHHHHHHHHHh
Confidence 99998877644
No 180
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=68.85 E-value=1.4e+02 Score=30.84 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=73.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhh---------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 582 LAIQRLEITKNDLRHRIAKEARGNAILQ---------------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA 646 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~ 646 (742)
++-+|=|.+..-|+.|+-+|.+.=..-| ..|.++-+...++-++||-||.+.+.+--+|-.||.+
T Consensus 17 aa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~ 96 (205)
T PF12240_consen 17 AACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQF 96 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888874321111 1245566666788999999999999999999999865
Q ss_pred HHHhhcCCCC-----CCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 647 LEVGLSMSSG-----QFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 647 Le~~l~~~~~-----~~~-~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (742)
=-.|-..+.. .+. .|..=+..-....++|.+...-+..||..|..||.+|-
T Consensus 97 a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~ 153 (205)
T PF12240_consen 97 AMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIA 153 (205)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3322221111 111 12111111114467888888888888888888887653
No 181
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.71 E-value=64 Score=39.55 Aligned_cols=109 Identities=19% Similarity=0.373 Sum_probs=63.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCC
Q 004616 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEV----GLSMSS 655 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~----~l~~~~ 655 (742)
-|+|++.++.+++.|+. .|+...+++-+ .++++|..|.+.=++|.+++++=.+.+..|.. .++...
T Consensus 552 Yi~~~~~ar~ei~~rv~-------~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVK-------LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36667777777777763 22222222222 23444555555555555555544444444432 222221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 656 ~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
.. .|. |-..-++.-.|+..+...+-.|..-+..++.++..|+.
T Consensus 625 ~~--~P~-LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 625 SQ--LPV-LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred cc--CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222 44455888899999999999999999999999976654
No 182
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=68.36 E-value=1.1e+02 Score=32.33 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (742)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (742)
..|.+......+++.+|+-++..|...+++=.+-...|..
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666665554443333333333
No 183
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.34 E-value=1.3e+02 Score=31.90 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=21.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHH
Q 004616 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (742)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le 627 (742)
+++++..-..|+.+|.+.-+.....+..+..++..++.+|..|.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555555555555554444
No 184
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.24 E-value=81 Score=35.23 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 673 EEIALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~ 697 (742)
.+++.++.++..++.++..++.++.
T Consensus 210 ~~l~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 210 GELGRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444433
No 185
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=67.59 E-value=72 Score=32.72 Aligned_cols=115 Identities=21% Similarity=0.238 Sum_probs=67.5
Q ss_pred cccCcccCCCCcccCCCCc--hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHH----HHHHHHHHHHHHHHHHHH
Q 004616 560 WGRSNARKTSSVESIDSSG--EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR----KQALHERRLALEQDVSRL 633 (742)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~Le~~V~~L 633 (742)
.|+++. +......||+. +.+-++-||+.-=.+|-.+|++--++ .++| .....--|.+|||=.+=-
T Consensus 74 lG~~~~--s~~~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~~-------~~~~~~~~~~~~~lvk~e~EqLL~YK 144 (195)
T PF12761_consen 74 LGRGGK--SYKEKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQA-------AESRRSDTDSKPALVKREFEQLLDYK 144 (195)
T ss_pred hccccC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-------HHhcccCCcchHHHHHHHHHHHHHHH
Confidence 555544 44555667754 45677888988888888888643222 2221 111122244555544444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 634 QEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 634 ~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (742)
++|| +..-+ ++. .-+...+.+=++|..+|..|.-||.++..=+..|.+-+
T Consensus 145 ~~ql------~~~~~---~~~--------~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 145 ERQL------RELEE---GRS--------KSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHH------Hhhhc---cCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444 43322 222 23455677778888888888888888877777776644
No 186
>PRK11637 AmiB activator; Provisional
Probab=67.50 E-value=1.5e+02 Score=33.94 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=41.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 004616 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (742)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~ 659 (742)
+-..|+.+...+.+|...+ ..++..+..+...+.+++++...|+.+..+-..+...|+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k-----------~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~---------- 226 (428)
T PRK11637 168 RQETIAELKQTREELAAQK-----------AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLES---------- 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4455555555555554332 2333334444444444444444444444443334333333
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (742)
Q Consensus 660 ~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (742)
..++.-++|+.++.+..+|+..+..+..+
T Consensus 227 -------~~~~~~~~l~~l~~~~~~L~~~I~~l~~~ 255 (428)
T PRK11637 227 -------SLQKDQQQLSELRANESRLRDSIARAERE 255 (428)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344445555566666666666665543
No 187
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=67.27 E-value=43 Score=37.85 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=68.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-------
Q 004616 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS------- 659 (742)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~------- 659 (742)
|+.+.+||+.+-. +.|+.| .+|=....+.|..||....+..+++..-...-..|+.|+....|++.
T Consensus 231 l~~~~~dl~~Q~~---~vn~al----~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 231 LEQTANDLRAQAD---AVNAAL----RKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4445555555443 445444 34444555666666666666666666655556666666655444432
Q ss_pred ----CC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 660 ----SS---RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 660 ----~~---~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
=| -+-++.-..|+.||..|+..|..|.+++...+..|..-..
T Consensus 304 ~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 304 NRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred hHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 3455667789999999999999999999888776655433
No 188
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=67.19 E-value=1.3e+02 Score=30.06 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=24.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (742)
Q Consensus 607 ~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (742)
-+|..-+..-..++..+..|+.||++|+.+|++|..
T Consensus 66 el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 66 ELQNSRKSEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443444456677777788899999988888865
No 189
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=67.15 E-value=6 Score=47.70 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=35.1
Q ss_pred CccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Q 004616 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (742)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~a 127 (742)
+.+.|++.+.+...-.|.|.|++.+++.+|+++|+.+...+
T Consensus 873 ~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 873 KSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred cceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 34788888887777899999999999999999999987643
No 190
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=64.98 E-value=99 Score=35.62 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=35.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
..-|.++..|=.||...|++|.-|..+.++||+||..|+-
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I 365 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI 365 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Confidence 3457788999999999999999999999999999987664
No 191
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=64.61 E-value=19 Score=30.38 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 628 QDVSRLQEQLQAERDLRAALEVGLSM-SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 628 ~~V~~L~~~L~~e~~~~~~Le~~l~~-~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
|-+..|+++|+.|..++...|+.+.. ... .+ . =.+.++..+..-+++|..|+.+|..-+.
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~~t~---------~~---~--~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAYSTD---------KK---K--VLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH---------HC---H---HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------cH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999987762 111 00 0 2344566666666777777776665544
No 192
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=63.70 E-value=33 Score=40.31 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 594 LRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (742)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le 648 (742)
||.++-+--|++.-|+.. ...+.+....|+.+|.+|+.+|+.++.-..-|+
T Consensus 141 lQ~qlE~~qkE~eeL~~~----~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKE----NEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444444444432 233344445555555666655555544444444
No 193
>PHA02562 46 endonuclease subunit; Provisional
Probab=63.69 E-value=1.5e+02 Score=34.65 Aligned_cols=32 Identities=9% Similarity=0.220 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 665 DSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (742)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (742)
|.....|-.+|+-++.++..|+..+.++....
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~ 329 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIM 329 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666444433
No 194
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.47 E-value=39 Score=28.20 Aligned_cols=27 Identities=30% Similarity=0.542 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 613 ERRKQALHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (742)
+.|=+....+..+|+++|.+|++++.+
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788899999999999999865
No 195
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=61.80 E-value=6.6 Score=45.62 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=55.6
Q ss_pred CCCceEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce--------eeccC
Q 004616 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--------VVRED 86 (742)
Q Consensus 15 ~~~~V~KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv--------~~~~~ 86 (742)
.+++..|+||+---.... ..-||.|..|+...+..|.+..... --+.|.+....++ ++...
T Consensus 409 ksst~~kEGWmvHyt~~d--~lRkrHYWrldsk~itlfqn~s~~r---------yYkeIPLsEIl~v~~~~~~~~vp~~~ 477 (888)
T KOG4236|consen 409 KSSTKLKEGWMVHYTSKD--NLRKRHYWRLDSKCITLFQNESTNR---------YYKEIPLSEILSVSSNNGFSLVPAGT 477 (888)
T ss_pred cchhhhhcceEEEEechh--hhhhhhhheeccceeEeeecCCCce---------eEEeecHHHhheeeccCCcccCCCCC
Confidence 456688899653111111 1225566677888888887654422 1112333333322 23334
Q ss_pred CccEEEEeecCCCCceEEEEeCC------------HHHHHHHHHHHHHHH
Q 004616 87 KKLLTVLFPDGRDGRAFTLKAET------------SEDLYEWKTALELAL 124 (742)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAdS------------eeE~~eWi~AL~~ai 124 (742)
..+||.|.+ +.+.||-.++ .+.+..|-.||+.++
T Consensus 478 ~phcFEI~T----~~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 478 NPHCFEIRT----ATTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred CCceEEEEe----eeEEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 568999976 4567777777 555889999998876
No 196
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=61.38 E-value=61 Score=39.94 Aligned_cols=99 Identities=23% Similarity=0.322 Sum_probs=57.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 004616 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (742)
...++|+..|.+|...+++--. .++..+..+ .++|+.+..||.+|.-=.+...++|..+......
T Consensus 596 eelE~le~eK~~Le~~L~~~~d-------~lE~~~~qL----~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~---- 660 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQD-------QLESLKNQL----KESEQKLEELQSELESAKESNSLAETQLKAMKES---- 660 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3455666666666665553222 222222222 5689999999999999999999999888633211
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
-+.+-.-+..+|+++..|-.+|..|..+|-.+|.
T Consensus 661 ------~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~ 694 (769)
T PF05911_consen 661 ------YESLETRLKDLEAEAEELQSKISSLEEELEKERA 694 (769)
T ss_pred ------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122222233455555555555555555555554
No 197
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=61.30 E-value=1e+02 Score=31.26 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=51.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 004616 587 LEITKNDLRHRIAKEARGNAILQASLER---RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRG 663 (742)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~ 663 (742)
+--.+.+|+.++...--.+..+++.+.. +-..+...+..|+..+..|...|.+-......|..-+
T Consensus 86 l~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~------------ 153 (194)
T PF08614_consen 86 LYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL------------ 153 (194)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred cccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 4456777888886655556556655533 3345566677788888888888888877777776533
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (742)
..|-.+..++|+.+.+|+++=.+|=.++-+..
T Consensus 154 -----~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 154 -----QALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888999999999888888766665443
No 198
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=61.17 E-value=1.5e+02 Score=30.40 Aligned_cols=115 Identities=19% Similarity=0.299 Sum_probs=75.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER----------RLALEQDVSRLQEQLQAERDLRAALEVGL 651 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (742)
.-|-+|.+.=.|||.+|..=.++|-.|..--.|..+++..+ -..-..||..|+.+|..=++--.++++=+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888999999988899999888777666666444 44466788888888876333333333333
Q ss_pred cCCCC-------------CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 652 SMSSG-------------QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 652 ~~~~~-------------~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (742)
....+ .++--..||. -.+|-..+..++..+..-+.+|..|..+|-
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~dknL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSEDKNLAE-REELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 1112245665 467777788888887777777777776654
No 199
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=60.53 E-value=1.1e+02 Score=34.23 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=36.5
Q ss_pred HHHHHHHhhhhhH-----HHHHHHHHHhhhh-hhhhHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 004616 580 EELAIQRLEITKN-----DLRHRIAKEARGN-AILQASLERRK-------QALHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 580 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~r~~Le~~V~~L~~~L~~ 639 (742)
.++..|+||+.+. +...+..|||-+- |.||+.--|.- .+++..|-.|+.+.+..+++|++
T Consensus 302 s~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleq 374 (442)
T PF06637_consen 302 SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQ 374 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777765 5566666666554 45666543332 45566666676666666665544
No 200
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=60.12 E-value=60 Score=35.46 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=52.3
Q ss_pred HHhhhhhHHHHHHHH-----------HHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004616 585 QRLEITKNDLRHRIA-----------KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (742)
Q Consensus 585 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~ 653 (742)
.+||..+..|++||. .-||||..|++.+.= =..|..|+.+|.++|.+-...-..
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L--------~~~L~~eI~~f~~~l~~~~~~~e~------- 109 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPL--------TKDLRREIDSFDERLEEAAEKEEL------- 109 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence 899999999999992 679999999998752 234666666666666543332211
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 654 SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (742)
Q Consensus 654 ~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~ 691 (742)
+..-+.--++|..+|.++..|=..+.+
T Consensus 110 -----------~~~~~~~~~~i~~V~~~ik~LL~rId~ 136 (302)
T PF05508_consen 110 -----------SKSSENQKESIKKVERYIKDLLARIDD 136 (302)
T ss_pred -----------ccCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 111123345666777777666666554
No 201
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=60.05 E-value=12 Score=43.76 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=57.0
Q ss_pred CCCcEEEEEEEeC---CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCccEEEEeecCCCCceEEEEeCCH
Q 004616 34 WKSWKKRWFILTR---TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (742)
Q Consensus 34 ~k~WKKRWFVL~~---~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~grty~fqAdSe 110 (742)
.+.|+.-|+++-. ..++.|....+...+ -.+++.++.+.....+ ...+..++|.++.. ...|+|.|+++
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~----~~iPl~~~~v~~pe~~-~~~D~~~~~k~~~s---~~~~~~~a~~~ 581 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVRAQ----ATIPLPGVEVTIPEFV-RREDLFHVFKLVQS---HLSWHLAADDE 581 (623)
T ss_pred CccceeeeeeccCCCCccccccCCccccccc----cccccCccccCCCccc-ccchhcchhhhhhh---cceeeeccCCH
Confidence 4679999998743 477777777664433 3457777777643332 22233344555442 56999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 004616 111 EDLYEWKTALELALA 125 (742)
Q Consensus 111 eE~~eWi~AL~~ai~ 125 (742)
+-.+.|+..|..|..
T Consensus 582 q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 582 QLQQRWLEVLLLAVS 596 (623)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988764
No 202
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=59.53 E-value=1.6e+02 Score=33.89 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=26.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (742)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~ 650 (742)
+.+..|+..++..+..+++.+..++.+++.=+.+..+++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 201 (457)
T TIGR01000 161 DKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNG 201 (457)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445566666667777777777777777666666666554
No 203
>PLN02372 violaxanthin de-epoxidase
Probab=58.10 E-value=31 Score=38.92 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=48.0
Q ss_pred CCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Q 004616 576 SSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE----QLQAERDLRAALEVGL 651 (742)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~----~L~~e~~~~~~Le~~l 651 (742)
.|+-+--+++|||.+-.+....|.|||+ +--.+||+||.++.+ -++.| +|+.+|
T Consensus 355 sCgpep~l~~~l~~~~e~~e~~i~~e~~-----------------~~~~e~~~~v~~~~~~~~~~~~~~-----~~~~~~ 412 (455)
T PLN02372 355 TCGPEPPLLERLEKDVEEGEKTIVKEAR-----------------QIEEELEKEVEKLGKEEESLFKRV-----ALEEGL 412 (455)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 4556666799999999999999988832 122345556665555 22222 344443
Q ss_pred cC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 004616 652 SM-SSGQFSSSRGMDSKTRAELEEIALAEADVARL 685 (742)
Q Consensus 652 ~~-~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~l 685 (742)
.. .....++-..|-.+.+++|+++.+.=.+|.+|
T Consensus 413 ~~l~~~~~~f~~~lskee~~~l~~~~~~~~~vek~ 447 (455)
T PLN02372 413 KELEQDEENFLKELSKEEKELLEKLKMEASEVEKL 447 (455)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 21 11112222345555666666666555554443
No 204
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.85 E-value=2.7e+02 Score=30.70 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 004616 668 TRAELEEIALAEADVA 683 (742)
Q Consensus 668 ~~~ll~eia~~E~~v~ 683 (742)
..++=++|+.++++|.
T Consensus 211 L~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 211 LEALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 205
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.70 E-value=1.5e+02 Score=30.49 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=56.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 004616 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~ 662 (742)
.|..|-.--.+++.+...--|.=+.+++-..+ +.+-=..++++|..|+++|..=..-..+|..+-.+- .
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~----L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl-------~ 96 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKR----LSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARL-------K 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 45555555555555544333333333333232 333334578899999999998888888887654321 1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 663 GMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (742)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (742)
.+-.+.+.|=-|-.+|+..+.+|+++-.+|+.
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334444555555555555555555555554
No 206
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.19 E-value=1.6e+02 Score=36.69 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=56.3
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 004616 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (742)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~ 658 (742)
+=|.+|++||..+.+++.+..+= +.+...+++.+..+.+.+..|+++-.++.+++++| .+.+|+.|-.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~----~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--a~~~l~~a~~------ 584 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEA----EALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE--AQQAIKEAKK------ 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------
Confidence 56788999999888888766432 23445557777778888888888888887777766 4567776654
Q ss_pred CCCCCCChhHHHHHHHHHH
Q 004616 659 SSSRGMDSKTRAELEEIAL 677 (742)
Q Consensus 659 ~~~~~~p~~~~~ll~eia~ 677 (742)
.++++|.++--
T Consensus 585 --------~~~~~i~~lk~ 595 (782)
T PRK00409 585 --------EADEIIKELRQ 595 (782)
T ss_pred --------HHHHHHHHHHH
Confidence 55777777753
No 207
>PRK11519 tyrosine kinase; Provisional
Probab=57.16 E-value=88 Score=38.36 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=46.5
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 004616 604 GNAILQASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADV 682 (742)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~-e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v 682 (742)
.++-++..+++|......-..-|++.+.+|+++|++ |..+..--. ..+.+. ++..++.+|..++-++..+
T Consensus 250 ~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~-----~~~~vd----~~~ea~~~l~~~~~l~~ql 320 (719)
T PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ-----DKDSVD----LPLEAKAVLDSMVNIDAQL 320 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCC----chHHHHHHHHHHHHHHHHH
Confidence 445555556666666666677788888888888765 222222211 112222 3466677777777766666
Q ss_pred HHHHHHHHHH
Q 004616 683 ARLKQKVAEL 692 (742)
Q Consensus 683 ~~le~~~~~l 692 (742)
..|+.+..+|
T Consensus 321 ~~l~~~~~~l 330 (719)
T PRK11519 321 NELTFKEAEI 330 (719)
T ss_pred HHHHHHHHHH
Confidence 6665555554
No 208
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=56.49 E-value=2.7e+02 Score=31.45 Aligned_cols=83 Identities=27% Similarity=0.437 Sum_probs=60.7
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCccEEEEeecCCCCceEEEEeCCHHH
Q 004616 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFPDGRDGRAFTLKAETSED 112 (742)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~~~~~p~g~~~~~l~L~~I~L~~~~sv~~~-~~Kk~~fvit~~~~~grty~fqAdSeeE 112 (742)
...|++.|||++...+.||.+........ ..+.|++..|+.+... ...++-|.|-.. +.+|.|.|-+.--
T Consensus 32 t~~~~k~~~~~~~~~~~~~~d~~A~~~~~------L~~~~~LR~C~~v~e~a~q~nY~~~i~~~---~~~~tL~~~~s~I 102 (593)
T KOG4807|consen 32 TSQWKKHWFVLTDSSLKYYRDSTAEEADE------LDGEIDLRSCTDVTEYAVQRNYGFQIHTK---DAVYTLSAMTSGI 102 (593)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhccc------CCccccHHHHHHHHHHHHHhccceeeccc---chhhhhHHHHHHH
Confidence 34599999999999999999875433111 2345777777664322 235566766443 7899999999999
Q ss_pred HHHHHHHHHHHHh
Q 004616 113 LYEWKTALELALA 125 (742)
Q Consensus 113 ~~eWi~AL~~ai~ 125 (742)
...|+.|+++...
T Consensus 103 r~~~~~A~~kT~~ 115 (593)
T KOG4807|consen 103 RRNWIEALRKTVR 115 (593)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998763
No 209
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.27 E-value=1.2e+02 Score=39.66 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (742)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (742)
..+.++..+++.++.++....+++.....++.+.
T Consensus 462 ~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 495 (1201)
T PF12128_consen 462 QYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEEL 495 (1201)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888777776666655555444433
No 210
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.17 E-value=1.9e+02 Score=27.56 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhhHHHH--HHHHHHhhhh
Q 004616 580 EELAIQRLEITKNDLR--HRIAKEARGN 605 (742)
Q Consensus 580 ~~~~~~~~~~~~~~~~--~~~~~~~~~~ 605 (742)
.+.+..++...+.||+ .+|+++|..|
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~ 46 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQK 46 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666553 4556666666
No 211
>PRK09039 hypothetical protein; Validated
Probab=55.92 E-value=1.6e+02 Score=32.82 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=10.5
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 004616 583 AIQRLEITKNDLRHRIAK 600 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~ 600 (742)
.|..++..=.+|+.+|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 355555566666666643
No 212
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.10 E-value=1e+02 Score=28.04 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMS--SGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (742)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~--~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (742)
.+|-++...|+.+++.=+.-|..+...+... .| ..+.+|++|+..+=.++..||.++..+..+|...
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~---------~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAG---------EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT---------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555544321 12 4567888888888888888888888887777654
No 213
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=54.10 E-value=75 Score=28.31 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=31.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 004616 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (742)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~ 707 (742)
..|++..++.|+ .|..-|..++.....+|.+-|.+|+.++
T Consensus 31 ~eLs~e~R~~lE------~E~~~l~~~l~~~E~eL~~LrkENrK~~ 70 (85)
T PF15188_consen 31 RELSPEARRSLE------KELNELKEKLENNEKELKLLRKENRKSM 70 (85)
T ss_pred cCCChHHHHHHH------HHHHHHHHHhhccHHHHHHHHHhhhhhH
Confidence 567888887765 6777788888888888888888888776
No 214
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=53.71 E-value=61 Score=29.60 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=44.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhh----HhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 004616 584 IQRLEITKNDLRHRIAKEARGNAILQ----ASLERRKQALHER----------RLALEQDVSRLQEQLQAERD 642 (742)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----------r~~Le~~V~~L~~~L~~e~~ 642 (742)
|.-++.+=+++|.|||.==|-=++|= .+.+.||-+..+. =.++|.|+..||.||..+.+
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~ld 73 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLD 73 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999987666656665 5668888777655 34589999999999987654
No 215
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.11 E-value=2.6e+02 Score=35.63 Aligned_cols=115 Identities=13% Similarity=0.181 Sum_probs=71.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 004616 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (742)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~ 659 (742)
||-+++.|-..|..|...|.+=.+. ..-=++++.....+..++.-+.-|+..++..|.....=-.-++..+.
T Consensus 650 dek~~~~L~~~k~rl~eel~ei~~~-~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~------- 721 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKEIQKR-RKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID------- 721 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 6888999999999999999764441 11223334444444444444555555555444332221111222221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004616 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYG 705 (742)
Q Consensus 660 ~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~ 705 (742)
-++|+.-++..+|-..|.++-.|+.++..+...++..=-.+-|
T Consensus 722 ---~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ig 764 (1141)
T KOG0018|consen 722 ---EFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIG 764 (1141)
T ss_pred ---hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 3566777888899999999999999999888888765444443
No 216
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=52.56 E-value=2.4e+02 Score=30.62 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 611 SLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (742)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (742)
..+...+.+.+....+|..+..|+++|+.|+.
T Consensus 226 ~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 226 KQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555666666666666666654
No 217
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.42 E-value=1.8e+02 Score=34.06 Aligned_cols=38 Identities=13% Similarity=0.348 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccc
Q 004616 675 IALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQ 715 (742)
Q Consensus 675 ia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~~~~~~~ 715 (742)
|.-++.++..++.++..+...+..-. ....|..|.+.-
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~Cp~C~~~~ 294 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYE---KGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCCCcC
Confidence 33444444555555544444433332 244666665543
No 218
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.31 E-value=52 Score=38.62 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (742)
+-.+..++..++.-++.++..|++++..|+.+|..-.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3446677777888888888888888888888775543
No 219
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=52.28 E-value=2.6e+02 Score=38.16 Aligned_cols=66 Identities=26% Similarity=0.393 Sum_probs=43.8
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 586 RLEITKNDLRHRIAKEARGNAILQASLERRK----------QALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (742)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (742)
+.|..+.+|...-.+..-.=..||..+..++ ..+...+..||.++..++.++..|...-..|+.-.
T Consensus 856 ~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~ 931 (1930)
T KOG0161|consen 856 KSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKK 931 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555554333 35567788999999999999999998888887644
No 220
>PRK09039 hypothetical protein; Validated
Probab=51.99 E-value=2.5e+02 Score=31.29 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=19.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHH
Q 004616 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLE 613 (742)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (742)
+.++.+|+.-=.+|-.-+.-|-..++-||..+.
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~ 84 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVA 84 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 445556666656666666666666666666553
No 221
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=51.86 E-value=12 Score=43.82 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=30.1
Q ss_pred cEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004616 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (742)
Q Consensus 89 ~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~ 125 (742)
++|+|.. ..+.++.|.|.+.+|+..||+||+..|-
T Consensus 446 e~F~IVs--~tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 446 ECFEIVS--NTGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred ceEEEec--cccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 5888764 3488999999999999999999998774
No 222
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.83 E-value=84 Score=31.99 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (742)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (742)
..-.++|+++..|+.++..|+.++..+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999988888887554
No 223
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=51.81 E-value=1.1e+02 Score=28.37 Aligned_cols=15 Identities=40% Similarity=0.756 Sum_probs=4.6
Q ss_pred HHhhhhhHHHHHHHH
Q 004616 585 QRLEITKNDLRHRIA 599 (742)
Q Consensus 585 ~~~~~~~~~~~~~~~ 599 (742)
.+||+.++++|++.+
T Consensus 5 ~~l~as~~el~n~La 19 (107)
T PF09304_consen 5 EALEASQNELQNRLA 19 (107)
T ss_dssp ---------HHHHHH
T ss_pred HHHHhhHHHHHHHHH
Confidence 578888888888874
No 224
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.41 E-value=2.7e+02 Score=28.84 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=25.4
Q ss_pred cccccCcccCCCCcccCCCCchHHHHHHHhh-------hhhHHHHHHHHHHhhhhhhh
Q 004616 558 AFWGRSNARKTSSVESIDSSGEEELAIQRLE-------ITKNDLRHRIAKEARGNAIL 608 (742)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 608 (742)
-++|+...|+..+. ..+|+||- -...-|..||..|+..||.-
T Consensus 6 ~~FG~~k~~~~~t~---------~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k 54 (221)
T KOG1656|consen 6 RLFGGMKQEAKPTP---------QEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARK 54 (221)
T ss_pred HHhCcccccCCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666665554 22455543 33456788998887776543
No 225
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=50.78 E-value=1.9e+02 Score=30.80 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCC-CCCCCCCCCChhHHHHHHHHHHHH----------HHHHHHHHHH
Q 004616 624 LALEQDVSRLQEQLQAERDLRAALEVG---LSMSS-GQFSSSRGMDSKTRAELEEIALAE----------ADVARLKQKV 689 (742)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~Le~~---l~~~~-~~~~~~~~~p~~~~~ll~eia~~E----------~~v~~le~~~ 689 (742)
.+||.|.+.++.+-.+-+.--+-||.| |.++. .++.+-..+-.+...-|+-+|+|| +.|-+|+.+.
T Consensus 94 s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEa 173 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEA 173 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 446666655554443333333344433 22221 222222333344444455566665 4578899999
Q ss_pred HHHHHHHHH
Q 004616 690 AELHHQLNQ 698 (742)
Q Consensus 690 ~~l~~~l~~ 698 (742)
-+|++.|.-
T Consensus 174 rdlrqelav 182 (333)
T KOG1853|consen 174 RDLRQELAV 182 (333)
T ss_pred HHHHHHHHH
Confidence 999987753
No 226
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.56 E-value=68 Score=36.23 Aligned_cols=104 Identities=22% Similarity=0.267 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCCCChhHHH----HHHHHHHHHHHHHH
Q 004616 612 LERRKQALHERRLALEQDVSRLQEQLQA---ERDLRAALEVGLSMSSGQFSSSRGMDSKTRA----ELEEIALAEADVAR 684 (742)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~---e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~----ll~eia~~E~~v~~ 684 (742)
++.-+.++.+++..+|.||..|.+.|.. +.+|-.-.+.|.. .-.|.++ ...||+-|-...++
T Consensus 105 leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~E-----------d~eKlrelv~pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 105 LEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKE-----------DEEKLRELVTPMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-----------hHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4555667788888899999998887764 3344333333332 1123333 24677777777788
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcccccccccccccccccccchhhh
Q 004616 685 LKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNHNSQHNICISF 730 (742)
Q Consensus 685 le~~~~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 730 (742)
-|+.+.+|...+++- .-|++..+.--.-.+...+++.-++.+
T Consensus 174 aE~~i~El~k~~~h~----a~slh~~t~lL~L~RD~s~~l~~leel 215 (542)
T KOG0993|consen 174 AEQRIDELSKAKHHK----AESLHVFTDLLNLARDKSEQLRQLEEL 215 (542)
T ss_pred HHHHHHHHHhhhccc----chHHHHHHHHHHHhcCCchhhhHHHHh
Confidence 888888887554442 235555554433222223334444433
No 227
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=50.09 E-value=2.8e+02 Score=36.09 Aligned_cols=6 Identities=67% Similarity=0.828 Sum_probs=2.6
Q ss_pred ceeeee
Q 004616 64 GEVNLT 69 (742)
Q Consensus 64 ~~~~l~ 69 (742)
+.+.+.
T Consensus 78 A~V~l~ 83 (1163)
T COG1196 78 AEVELT 83 (1163)
T ss_pred eEEEEE
Confidence 444443
No 228
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.42 E-value=1e+02 Score=36.75 Aligned_cols=103 Identities=23% Similarity=0.360 Sum_probs=64.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 004616 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER------RLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (742)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~ 654 (742)
+.-++||+.--.+|+..|-.-=+.+..|-+.+++=+...+.. =.+++.++.+|++.|+++......|++=|..-
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777666667777776665544433211 12488899999999999999999988766432
Q ss_pred C--CCCC-CCCCCChhHHHHHH--HHHHHHHHHH
Q 004616 655 S--GQFS-SSRGMDSKTRAELE--EIALAEADVA 683 (742)
Q Consensus 655 ~--~~~~-~~~~~p~~~~~ll~--eia~~E~~v~ 683 (742)
. -.+- +.-..|-+.-+.+. .|+.+|++..
T Consensus 508 ~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~g 541 (652)
T COG2433 508 RKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYG 541 (652)
T ss_pred HHHHhhhhcCCCcceehhhhhhHHHHHhHHHhhc
Confidence 1 1121 23446666655543 5666666543
No 229
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=49.37 E-value=72 Score=29.96 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=18.5
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 603 RGNAILQASLERRKQALHERRLALEQDVSRLQ 634 (742)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~ 634 (742)
+++.+++.-+++-+....+.|..++.-+.++.
T Consensus 23 k~~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~ 54 (118)
T TIGR01837 23 EGSKFFNRLVKEGELAEKRGQKRFDESVDAAR 54 (118)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 45666666666655555555555555554444
No 230
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.21 E-value=2.5e+02 Score=27.06 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004616 677 LAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 677 ~~E~~v~~le~~~~~l~~~l~ 697 (742)
..+.|+-+-|.++..|+.+|.
T Consensus 130 q~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345666666666666666654
No 231
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=48.95 E-value=54 Score=31.54 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (742)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (742)
-|+-|.+||.|||. ||+- ++.+..-...|-.-|+.|+..|.+|+.--.-|..
T Consensus 23 WeiERaEmkarIa~-------LEGE----~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 23 WEIERAEMKARIAF-------LEGE----RRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred hHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35678899999973 4443 3344445566777899999999999876554443
No 232
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=48.76 E-value=3.5e+02 Score=30.55 Aligned_cols=95 Identities=27% Similarity=0.291 Sum_probs=60.2
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 004616 586 RLEITKNDLRHRIAKEARGNAILQASL---ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (742)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~ 662 (742)
|.|..-..|+..|..-+++|+-||..- ++.=++-++-+..-++|-..-..|||.|-
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec--------------------- 340 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAEC--------------------- 340 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 445555678899999999999988542 22222222333333333322222333332
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004616 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (742)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~ 703 (742)
..+++-.|+|=|.|..|--.|++++.+.+.+|-|.+.+-
T Consensus 341 --~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 341 --ARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235677888889999998899999998888888877653
No 233
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.24 E-value=2.5e+02 Score=36.11 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=43.1
Q ss_pred HHHhhhhhHHHHHHHHHHhh----hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 004616 584 IQRLEITKNDLRHRIAKEAR----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (742)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~ 654 (742)
.++.|+.+..+..|+ +++| ++..=-..++++....++.+--|-+..++|.+++++.+.-...++.+...+
T Consensus 365 ~~k~e~~~~~~~e~~-~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 365 VEKNEAVKKEIKERA-KELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA 438 (1293)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence 344445454444443 2333 222222344556666677777788888999999998888888888766533
No 234
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=48.11 E-value=2.9e+02 Score=27.50 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=20.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Q 004616 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (742)
..+..++..-+.|+..+..+-+-++.+++.+..-+...
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~ 118 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDL 118 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554444433
No 235
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=47.97 E-value=1.9e+02 Score=35.44 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 669 RAELEEIALAEADVARLKQKVAELHH 694 (742)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~ 694 (742)
..||.+.+-||+|-.-|.++|..|+.
T Consensus 93 ~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 93 ARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666654
No 236
>PRK04863 mukB cell division protein MukB; Provisional
Probab=47.96 E-value=1.6e+02 Score=39.35 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (742)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~ 691 (742)
-..|++....|+..|+.++...+.|..+-......+.. +.++-...+-.|+++.-|++++.+
T Consensus 515 ~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 576 (1486)
T PRK04863 515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-------EDELEQLQEELEARLESLSESVSE 576 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44588899999999999999999999876533222222 233333344445555445444433
No 237
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=47.84 E-value=2e+02 Score=27.70 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=38.8
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 004616 605 NAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVAR 684 (742)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~ 684 (742)
=..+++.++....+.+.....+++++..++++|+.+.. .++ +...+++-.|+...+.+
T Consensus 34 ~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~--------------~ls-----~~~~~~~~~~l~~~~~~--- 91 (158)
T PF03938_consen 34 GKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKA--------------TLS-----EEERQKRQQELQQKEQE--- 91 (158)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------S-----SHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------ccc-----hhHHHHHHHHHHHHHHH---
Confidence 33445555555555556666666666666666665533 111 33334444444444444
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004616 685 LKQKVAELHHQLNQQRQH 702 (742)
Q Consensus 685 le~~~~~l~~~l~~~~~~ 702 (742)
|.+....++.++.++++.
T Consensus 92 l~~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 92 LQQFQQQAQQQLQQEEQE 109 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555666666554
No 238
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=46.93 E-value=2.5e+02 Score=33.50 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=62.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 004616 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLSMSSGQ 657 (742)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V-~~L~~~L~~e~~~~~~Le~~l~~~~~~ 657 (742)
+=+..|.||+....+++.+|..-+..|..==...-.+-+.+.++-.+|..|+ +-|+... +..++..|..+..
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~--~~~i~~~l~~a~~----- 83 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEI--ENEIQPQLRDAAE----- 83 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHH-----
Confidence 3467899999988888888887777666533333455566777788888888 4444433 3334555554443
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (742)
Q Consensus 658 ~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (742)
+.+.|-.|++-.+.-+.-|| ++..++.+|.+-
T Consensus 84 ---------e~~~L~~eL~~~~~~l~~L~-~L~~i~~~l~~~ 115 (593)
T PF06248_consen 84 ---------ELQELKRELEENEQLLEVLE-QLQEIDELLEEV 115 (593)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33455555555555444444 555555555433
No 239
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.86 E-value=3.8e+02 Score=29.52 Aligned_cols=47 Identities=26% Similarity=0.245 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQ 634 (742)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~ 634 (742)
.+.+.+.++.++.|.+.-..++.+-|.++... +++..+|+.+|..|+
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l--------~~~~~~L~~e~~~L~ 192 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKL--------RDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 44555666667777766666666666655544 444444444444444
No 240
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=46.51 E-value=50 Score=38.75 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=44.8
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 004616 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQA---LHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~Le~~V~~L~~~L~~ 639 (742)
-|-+.||||-.++.+=--+|-+||.-++.+|++ +.++--+||.|+++++..+..
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999998889999999999999884 577777888888888776543
No 241
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=46.36 E-value=1.8e+02 Score=34.39 Aligned_cols=79 Identities=25% Similarity=0.393 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG-------QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (742)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~-------~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l 692 (742)
...|..||+|+.+|+.++.+ ++.-++.+.....| .+...+.+-.+..=+...|+.+|+++.+|..+..-|
T Consensus 105 ~~~ra~~e~ei~kl~~e~~e---lr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 105 ARERAKLEIEITKLREELKE---LRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45688899999999988864 33333333221111 123445666666667777788888887777777777
Q ss_pred HHHHHHHHh
Q 004616 693 HHQLNQQRQ 701 (742)
Q Consensus 693 ~~~l~~~~~ 701 (742)
+.+|..-|.
T Consensus 182 ~~~l~~~r~ 190 (546)
T KOG0977|consen 182 REELARARK 190 (546)
T ss_pred HHHHHHHHH
Confidence 766665553
No 242
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=46.03 E-value=1.9e+02 Score=38.98 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=78.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLA-----------LEQDVSRLQEQLQAERDLRAALEV 649 (742)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-----------Le~~V~~L~~~L~~e~~~~~~Le~ 649 (742)
+..|.+|+...+.|+..|.+....+..|+....+.|+..++-+.. |.-++.+|++.|..=.++-+=|+.
T Consensus 1256 ~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~ 1335 (1822)
T KOG4674|consen 1256 NFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKK 1335 (1822)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888899999999999999999999998877666554 777999999999977777776776
Q ss_pred hhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 650 GLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (742)
Q Consensus 650 ~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (742)
-+++-. ..+-.+..++-.+++.+..+|..|+..-..|-..+...
T Consensus 1336 ~~~~~q------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~ 1379 (1822)
T KOG4674|consen 1336 ELNRLQ------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEK 1379 (1822)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665432 22233444555666666666655555544444444333
No 243
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=45.57 E-value=2.1e+02 Score=35.27 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=36.6
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLR 644 (742)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~ 644 (742)
-+|-..|.|+|.-+ +|+|-|+. .+..++..+...|..++.||.++|+.++.++.+-
T Consensus 326 mkltrqkadirc~L-lEarrk~e---gfddk~~eLEKkrd~al~dvr~i~e~k~nve~el 381 (1265)
T KOG0976|consen 326 MKLTRQKADIRCAL-LEARRKAE---GFDDKLNELEKKRDMALMDVRSIQEKKENVEEEL 381 (1265)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhc---chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33334444444333 45565553 4455667788889999999999999998765543
No 244
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.39 E-value=2.5e+02 Score=29.07 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 671 ELEEIALAEADVARLKQKVAELHHQLNQ 698 (742)
Q Consensus 671 ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (742)
|-+|-+.|..++..+..++..|..++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555444444433
No 245
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.29 E-value=2.8e+02 Score=32.79 Aligned_cols=123 Identities=18% Similarity=0.249 Sum_probs=74.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 004616 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (742)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~ 657 (742)
|--|.|-...|.++|+-|. .||-..+.+-+ ..+|.|.-++.--.+|.++.++=..-|..|++-+++-
T Consensus 573 EqYi~~~dlV~~e~qrH~~-------~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L--- 642 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVK-------LLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL--- 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---
Confidence 4445555555566665543 12222222222 2345566677777777788887777888888766531
Q ss_pred CCCC-CCCChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccc
Q 004616 658 FSSS-RGMDSKTRAEL---EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDR 713 (742)
Q Consensus 658 ~~~~-~~~p~~~~~ll---~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~~~~~ 713 (742)
+..| +++|+-+.+.+ .|+-.+-.++--|-.-+..++...+.||.+-..+..++...
T Consensus 643 ~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~ 702 (741)
T KOG4460|consen 643 LHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKP 702 (741)
T ss_pred HhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 1222 56666666555 46666666777777777788888888888776666665443
No 246
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.08 E-value=3.4e+02 Score=28.50 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (742)
+.|=-|.+.||+..-+|+.+|..|+.++.
T Consensus 173 k~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 173 KRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 44445556666666666666666665543
No 247
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=45.01 E-value=1.5e+02 Score=29.73 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=55.1
Q ss_pred HHHHhhhhhHHHHHHHHHHh-hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCCC
Q 004616 583 AIQRLEITKNDLRHRIAKEA-RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA----LEVGLSMSSGQ 657 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~----Le~~l~~~~~~ 657 (742)
....+++.=.+|+.-|..-- ..=+.+++..++=+.....-|..|.+|+.+|+.-++-+.+++.. ....++..
T Consensus 52 ~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--- 128 (177)
T PF07798_consen 52 QEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--- 128 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---
Confidence 34444444444444442110 11144566666666667777788888888888877766665542 11222211
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (742)
Q Consensus 658 ~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~ 690 (742)
|-.--..+=.||+-|..+|..++.++.
T Consensus 129 ------i~e~~~ki~~ei~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 129 ------IQELNNKIDTEIANLRTEIESLKWDTL 155 (177)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123456778889999888776653
No 248
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=44.71 E-value=4.3e+02 Score=28.47 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=48.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004616 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQK 688 (742)
Q Consensus 609 ~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~ 688 (742)
++....+.+.....+.+|+.++..+++++..-...-..=..+- .-+-...--+..++.-+.+..++.++..+..+
T Consensus 130 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~-----~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~ 204 (301)
T PF14362_consen 130 QASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT-----GGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQ 204 (301)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555566666666666666554443322222211 11212334467778888888888888888888
Q ss_pred HHHHHHHHH
Q 004616 689 VAELHHQLN 697 (742)
Q Consensus 689 ~~~l~~~l~ 697 (742)
......+|.
T Consensus 205 ~~~~~~~l~ 213 (301)
T PF14362_consen 205 IDAAIAALD 213 (301)
T ss_pred HHHHHHHHH
Confidence 777777776
No 249
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=44.70 E-value=35 Score=43.24 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=37.1
Q ss_pred cCCccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhccc
Q 004616 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (742)
Q Consensus 85 ~~Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~aP~ 129 (742)
.+++-||+|+.....-..|-+.|.|..|++.|++.|+.++...|.
T Consensus 682 td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~ 726 (1167)
T KOG3520|consen 682 TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPR 726 (1167)
T ss_pred ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCc
Confidence 467788999865444578999999999999999999999976554
No 250
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=44.64 E-value=54 Score=30.35 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004616 675 IALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 675 ia~~E~~v~~le~~~~~l~~~l~ 697 (742)
...+.++|-.||++|.+|..++.
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 85 MDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778888888888888877653
No 251
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=44.24 E-value=5.7e+02 Score=32.56 Aligned_cols=119 Identities=21% Similarity=0.184 Sum_probs=71.5
Q ss_pred CchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhH-------HHHHHHH--HHHHHHHHHHHHHHH--H--HHHHHHHH
Q 004616 577 SGEEELAIQRLEITKNDLRHRIAKEARGNAILQASL-------ERRKQAL--HERRLALEQDVSRLQ--E--QLQAERDL 643 (742)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~r~~Le~~V~~L~--~--~L~~e~~~ 643 (742)
|-.-|+-|+|+-..--+-+.+|..+.+.+.--+..+ .-.++.. |.+++--..++.-|. + |+.-|..+
T Consensus 59 cp~kelfi~riq~ldlete~a~~~~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~ 138 (1195)
T KOG4643|consen 59 CPTKELFIQRIQILDLETEMAQMRTIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIA 138 (1195)
T ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899998888888888876666665444433 2333344 666655444443322 2 33344444
Q ss_pred HHHHH-HhhcCCC------C-CCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 644 RAALE-VGLSMSS------G-QFSSS-RGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (742)
Q Consensus 644 ~~~Le-~~l~~~~------~-~~~~~-~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (742)
-.-|+ +|++... + ....| ...-.+-.+|=.|||++|+-|..|++++.+=--+
T Consensus 139 e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~en 199 (1195)
T KOG4643|consen 139 EKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFEN 199 (1195)
T ss_pred HHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 5565431 1 22244 3345567888899999999999998887654333
No 252
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=43.85 E-value=3.7e+02 Score=27.42 Aligned_cols=65 Identities=26% Similarity=0.288 Sum_probs=49.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER--RL-ALEQDVSRLQEQLQAERDLRAALEVG 650 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r~-~Le~~V~~L~~~L~~e~~~~~~Le~~ 650 (742)
+|+..+..+.+|+...+.=-+--+.|+-+.++||..+++. |. +|+++..-|+++ ++.+|.-|..-
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~---~e~lr~el~k~ 142 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKI---LESLRWELAKI 142 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 6788888888888888877777788999999999876543 55 888888888883 44566655553
No 253
>PRK03918 chromosome segregation protein; Provisional
Probab=43.83 E-value=4.2e+02 Score=32.98 Aligned_cols=10 Identities=0% Similarity=-0.120 Sum_probs=5.0
Q ss_pred chhhhhcccc
Q 004616 313 AVAACMAPLL 322 (742)
Q Consensus 313 NLAivfaP~L 322 (742)
+..+.|.|.+
T Consensus 16 ~~~i~f~~g~ 25 (880)
T PRK03918 16 SSVVEFDDGI 25 (880)
T ss_pred CceEecCCCc
Confidence 3445666533
No 254
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.79 E-value=3.8e+02 Score=35.10 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=25.1
Q ss_pred cccccCcccCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHH
Q 004616 558 AFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKE 601 (742)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (742)
++||-.=.-..+. .-|+.-++|.+-++|+.....|+.-.++.
T Consensus 582 slyGl~LdL~~I~--~pd~~~~ee~L~~~l~~~~~~l~~~~~~~ 623 (1201)
T PF12128_consen 582 SLYGLSLDLSAID--VPDYAASEEELRERLEQAEDQLQSAEERQ 623 (1201)
T ss_pred ccceeEeehhhcC--CchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 7888653222222 22455677777788887777776655443
No 255
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.71 E-value=1.2e+02 Score=26.54 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 588 EITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (742)
...+.++.++|+-.+-+...++..|-.=-.+-..-+..-|.||.+|+.+|+.
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477788888888888888888877665566666677788888888888853
No 256
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=43.66 E-value=4.2e+02 Score=33.77 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 672 LEEIALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 672 l~eia~~E~~v~~le~~~~~l~~~l~ 697 (742)
-.++.-++.++..++.++..+..+|.
T Consensus 914 ~~~l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 914 RRELEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 257
>PLN02678 seryl-tRNA synthetase
Probab=43.34 E-value=74 Score=36.81 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
..+.+|++++..|-++|..||.++..+..+|.+...
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777888777777777776543
No 258
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.08 E-value=4.9e+02 Score=28.66 Aligned_cols=14 Identities=43% Similarity=0.240 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHH
Q 004616 667 KTRAELEEIALAEA 680 (742)
Q Consensus 667 ~~~~ll~eia~~E~ 680 (742)
+..+++++|+-+|.
T Consensus 247 ~k~e~~~~I~~ae~ 260 (312)
T smart00787 247 KKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555554
No 259
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=42.52 E-value=4.3e+02 Score=27.77 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004616 616 KQALHERRLALEQDVSRLQEQ 636 (742)
Q Consensus 616 ~~~~~~~r~~Le~~V~~L~~~ 636 (742)
++.++.+...++.++.+|+.+
T Consensus 54 ~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 54 QKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555443
No 260
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.51 E-value=3.6e+02 Score=31.14 Aligned_cols=129 Identities=19% Similarity=0.290 Sum_probs=78.4
Q ss_pred ccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhh-----hhhhhHhHHHHHH-------HHH-HHHHHHHHHHHHHHHHHH
Q 004616 572 ESIDSSGEEELAIQRLEITKNDLRHRIAKEARG-----NAILQASLERRKQ-------ALH-ERRLALEQDVSRLQEQLQ 638 (742)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------~~~-~~r~~Le~~V~~L~~~L~ 638 (742)
+.++--.+-|+-.++|+..-..++.+|-.=.+- =+.+|..+.=|+. +.+ .+-.+||||+.-+-++.+
T Consensus 283 rl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 283 RLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566777788877777777666322111 0112222111111 001 223468999988888888
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 639 AERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 639 ~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
.-..+++-|-++|..-+-.++ --..-.-.+|+..+|--.++||.+.=..--+|+.|++.+-.
T Consensus 363 ~~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 363 SNEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred hhHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888763211111 00122346889999999999999988888888888776543
No 261
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=42.37 E-value=6e+02 Score=29.39 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
-++|...++.++.++.-|+.++..|+.++.+.+.
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLES 345 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666667777777777777777666666655544
No 262
>PF14992 TMCO5: TMCO5 family
Probab=42.36 E-value=1.5e+02 Score=32.23 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=22.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 661 SRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (742)
Q Consensus 661 ~~~~p~~~~~ll~eia~~E~~v~~le~~~~~ 691 (742)
+...-.+.+-+++++|-.|.+++++|.....
T Consensus 111 lq~sk~~lqql~~~~~~qE~ei~kve~d~~~ 141 (280)
T PF14992_consen 111 LQFSKNKLQQLLESCASQEKEIAKVEDDYQQ 141 (280)
T ss_pred cHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444477788999999999999999754433
No 263
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=42.15 E-value=1.9e+02 Score=27.10 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=31.5
Q ss_pred CccEEEEeecCCCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Q 004616 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (742)
Q Consensus 87 Kk~~fvit~~~~~grty~fqAdSeeE~~eWi~AL~~ai~~a 127 (742)
..+.|.+.+. .+..-|.+++..+.+.|++.|+..+..+
T Consensus 69 ~~~yfgL~T~---~G~vEfec~~~~~~k~W~~gI~~mL~~~ 106 (110)
T PF08458_consen 69 ERRYFGLKTA---QGVVEFECDSQREYKRWVQGIQHMLSQV 106 (110)
T ss_pred eEEEEEEEec---CcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence 4466777653 6789999999999999999999998754
No 264
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=42.05 E-value=3.6e+02 Score=26.81 Aligned_cols=100 Identities=20% Similarity=0.270 Sum_probs=55.0
Q ss_pred HHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC--hhHHHHHHHHHH
Q 004616 600 KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMD--SKTRAELEEIAL 677 (742)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p--~~~~~ll~eia~ 677 (742)
--.+-+..||..|...+.++.+.=.+|.+-..+.....+.-...+..|...+. ..++|++-.++- ...=.+..+++.
T Consensus 12 rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~-gg~~f~i~~~~~~~~~r~~l~~~~~~ 90 (158)
T PF09486_consen 12 RRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT-GGAPFSIDEYLALRRYRDVLEERVRA 90 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 33466677777776666666555555555555444444444444444444443 112333222222 223345667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004616 678 AEADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 678 ~E~~v~~le~~~~~l~~~l~~~~ 700 (742)
+|.++..|.+.|..-+.+|...+
T Consensus 91 ~e~~~a~l~~~l~~~~~~ia~~~ 113 (158)
T PF09486_consen 91 AEAELAALRQALRAAEDEIAATR 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766665544
No 265
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=42.04 E-value=4.2e+02 Score=27.84 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=31.1
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 603 RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (742)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~ 645 (742)
|-...||+-+.+|-...+.-+..+++.+..++..++.+..-+.
T Consensus 45 ~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~ 87 (247)
T PF06705_consen 45 KLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQ 87 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777788888888877777665543
No 266
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.92 E-value=3.3e+02 Score=33.01 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=58.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 004616 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (742)
..|+.|+....+++.+|++--..=..++.. -..+.+....|+.++.+++++..+-..+..+++.|-
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 486 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQ----LETLKEAIEALRKTLDEKTKQKINAFELERAITIAD---------- 486 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------
Confidence 377888888888887776432222222222 233444445566666666666666555555555432
Q ss_pred CCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004616 662 RGMDSKTRAELEEIA--LAEADVARLKQKVAELHHQLNQQ 699 (742)
Q Consensus 662 ~~~p~~~~~ll~eia--~~E~~v~~le~~~~~l~~~l~~~ 699 (742)
+++++|.++. +.+.-+..||..+.+.-.+|.+.
T Consensus 487 -----~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 487 -----KAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK 521 (650)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4466666553 34555777888888888888765
No 267
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=41.90 E-value=4.2e+02 Score=31.20 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=59.6
Q ss_pred HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHH
Q 004616 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIAL 677 (742)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~-~~~~~p~~~~~ll~eia~ 677 (742)
.++-+..-.+|..++.-|..++..+.+|.+==.+-++-||.-..+..-|..+... +.+. .+.. ..--+|=.|...
T Consensus 210 ~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~--~el~~l~~E~~~ 285 (511)
T PF09787_consen 210 IEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNS--IELEELKQERDH 285 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccch--hcchhhHHHHHH
Confidence 3344444445555555555555556666555555666666666666667662211 1111 0111 222356678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004616 678 AEADVARLKQKVAELHHQLNQQRQHHYG 705 (742)
Q Consensus 678 ~E~~v~~le~~~~~l~~~l~~~~~~~~~ 705 (742)
+.+++..|+.|+..|+.++.+......+
T Consensus 286 ~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 286 LQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888988888888888665554333
No 268
>PF14282 FlxA: FlxA-like protein
Probab=41.51 E-value=1.6e+02 Score=27.03 Aligned_cols=63 Identities=27% Similarity=0.456 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (742)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (742)
-..|++.+..|+++|++-.. ...+|++++. .-+.+|...|.-|+.++..|+.+..++...
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~------------------~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQ------------------DSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHc------------------ccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577778888888764321 1346666664 456677778888888888887777776654
Q ss_pred hcC
Q 004616 703 HYG 705 (742)
Q Consensus 703 ~~~ 705 (742)
...
T Consensus 81 ~~~ 83 (106)
T PF14282_consen 81 KQS 83 (106)
T ss_pred ccc
Confidence 433
No 269
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=41.41 E-value=1.8e+02 Score=33.38 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
.+.+|++|+..+-.++..||+++..+..++.+...
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888999988888888887665
No 270
>PRK02224 chromosome segregation protein; Provisional
Probab=41.36 E-value=3.9e+02 Score=33.40 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=9.0
Q ss_pred eCCHHHHHHHHHHH
Q 004616 107 AETSEDLYEWKTAL 120 (742)
Q Consensus 107 AdSeeE~~eWi~AL 120 (742)
+....++..|+..|
T Consensus 108 ~~~~~~~~~~i~~l 121 (880)
T PRK02224 108 IDGARDVREEVTEL 121 (880)
T ss_pred ccChHHHHHHHHHH
Confidence 34556777777665
No 271
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=40.48 E-value=2e+02 Score=37.06 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004616 623 RLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (742)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~ 652 (742)
...+.-+|.+||.+|++|.+-|..+.+-|.
T Consensus 751 ~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 751 KDQLITEVLKLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 345888999999999999999999999886
No 272
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.47 E-value=4.1e+02 Score=26.99 Aligned_cols=67 Identities=27% Similarity=0.286 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 615 RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (742)
Q Consensus 615 ~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (742)
.+..+..+-..|+.+...|++++.+=+.-...++.... ...-.+......+|..|++.-..|+.
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~----------------e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE----------------ELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777888888888887776666666665443 33445567788888888888888877
Q ss_pred HHH
Q 004616 695 QLN 697 (742)
Q Consensus 695 ~l~ 697 (742)
+|-
T Consensus 185 ~l~ 187 (189)
T PF10211_consen 185 QLE 187 (189)
T ss_pred HHh
Confidence 764
No 273
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=40.22 E-value=5.9e+02 Score=33.11 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=61.0
Q ss_pred HHHHHHHhhhhhHHHHHHH---HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcCC
Q 004616 580 EELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAE--RDLRAALEVGLSMS 654 (742)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e--~~~~~~Le~~l~~~ 654 (742)
.++....|++-..-|..++ ..|.-+|..+|.=...|..-...+-..||++|..||.++..- .....+++.+....
T Consensus 171 ~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~ 250 (1109)
T PRK10929 171 AQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLA 250 (1109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455555444444444 346668888888877777777777778999999999888652 22333444444310
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 655 SGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (742)
Q Consensus 655 ~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l 692 (742)
. -...+|+..+++++.-..|=.++...-++++.|
T Consensus 251 ~----~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l 284 (1109)
T PRK10929 251 E----QSGDLPKSIVAQFKINRELSQALNQQAQRMDLI 284 (1109)
T ss_pred H----hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112345556666644444444444444443333
No 274
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.20 E-value=3.9e+02 Score=33.53 Aligned_cols=135 Identities=24% Similarity=0.321 Sum_probs=77.3
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH------HHHHH-----HHHHHHHHHHHhhc
Q 004616 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRL------QEQLQ-----AERDLRAALEVGLS 652 (742)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L------~~~L~-----~e~~~~~~Le~~l~ 652 (742)
|.-+|.+-.|||.+|.-- =|-...=..|--++=.+.+|=..||.+|..| ++||+ .|.+||.-|+-+=+
T Consensus 426 ~d~aEs~iadlkEQVDAA-lGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g 504 (1243)
T KOG0971|consen 426 LDQAESTIADLKEQVDAA-LGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKG 504 (1243)
T ss_pred HHHHHHHHHHHHHHHHHh-hcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444566666777766422 2222223345566777788888888887655 45664 37788888776532
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccccccccc-cccc
Q 004616 653 MSSGQFSSSRGMDSKTRAELEEIALA-------EADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNH-NSQH 724 (742)
Q Consensus 653 ~~~~~~~~~~~~p~~~~~ll~eia~~-------E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~~-~~~~ 724 (742)
..++|..++-.. --+|.+.-+-|..|+-||...++++.++. ++.++.++. ....
T Consensus 505 --------------~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sse----ees~q~~s~~~et~ 566 (1243)
T KOG0971|consen 505 --------------ARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSE----EESQQPPSVDPETF 566 (1243)
T ss_pred --------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH----HHhcCCCCCchhhh
Confidence 125555555444 44555556666677777777777665543 333444433 2334
Q ss_pred cchhhhcchhhcc
Q 004616 725 NICISFYMWLAWG 737 (742)
Q Consensus 725 ~~~~~~~~~~~~~ 737 (742)
.++++|-.+=||.
T Consensus 567 dyk~~fa~skaya 579 (1243)
T KOG0971|consen 567 DYKIKFAESKAYA 579 (1243)
T ss_pred HHHHHHHHhHHHH
Confidence 4444466665553
No 275
>PRK12704 phosphodiesterase; Provisional
Probab=40.10 E-value=5.6e+02 Score=30.34 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004616 674 EIALAEADVARLKQKVAELHHQLNQQRQHHYG 705 (742)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~ 705 (742)
+|.-.+.++..+++++..+..+..++-+.-.|
T Consensus 118 ~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~ 149 (520)
T PRK12704 118 ELEQKQQELEKKEEELEELIEEQLQELERISG 149 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555555555555666665555555443333
No 276
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=40.00 E-value=5.2e+02 Score=33.06 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=8.1
Q ss_pred cHHHHHHHHHHHhcCCC
Q 004616 181 PSFLEKALRFLEKFGTK 197 (742)
Q Consensus 181 P~il~~~i~~L~~~Gl~ 197 (742)
|.-...+..++...|+.
T Consensus 116 ~~~~~~~~~~l~~~~~~ 132 (1164)
T TIGR02169 116 RVRLSEIHDFLAAAGIY 132 (1164)
T ss_pred cccHHHHHHHHHHcCCC
Confidence 33344455555555543
No 277
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=39.94 E-value=2.9e+02 Score=30.61 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004616 619 LHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~ 639 (742)
..+.+.-|+++|.+++++|.+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ 188 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNA 188 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888864
No 278
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=39.62 E-value=1.5e+02 Score=29.89 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 612 LERRKQALHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (742)
+..|..-+.+++..|++.+++|+++|..
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~ 110 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQ 110 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888887754
No 279
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.54 E-value=5.5e+02 Score=30.35 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004616 617 QALHERRLALEQDVSRLQEQL 637 (742)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L 637 (742)
....++|.++++++...+++|
T Consensus 58 eE~~~~R~Ele~el~~~e~rL 78 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNEL 78 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777766655555
No 280
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=39.52 E-value=1.8e+02 Score=35.76 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=42.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004616 608 LQASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLK 686 (742)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~-e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le 686 (742)
++.+++.|......-..-|++++.+|+++|.+ |..|..--.. .+.+. +...++.+|.+++-+|..+..|+
T Consensus 254 i~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~-----~~~~d----~~~ea~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 254 LQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ-----RDSVD----LNLEAKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCC----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555566677777777777764 3333222211 12221 34566777777777776666666
Q ss_pred HHHHHH
Q 004616 687 QKVAEL 692 (742)
Q Consensus 687 ~~~~~l 692 (742)
.+..+|
T Consensus 325 ~~~~~l 330 (726)
T PRK09841 325 FREAEI 330 (726)
T ss_pred HHHHHH
Confidence 555444
No 281
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.31 E-value=3.4e+02 Score=25.71 Aligned_cols=46 Identities=33% Similarity=0.466 Sum_probs=22.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (742)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (742)
+.+|+..|..|...|.+=.+.|..+++. ..+-..|++++..|+.+.
T Consensus 39 l~~l~~~r~~l~~Eiv~l~~~~e~~~~~--------~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 39 LARLEAERDELREEIVKLMEENEELRAL--------KKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 4455555555555555545555444332 223334555555555543
No 282
>PRK02224 chromosome segregation protein; Provisional
Probab=39.25 E-value=3.6e+02 Score=33.66 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=15.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 609 QASLERRKQALHERRLALEQDVSRLQEQLQ 638 (742)
Q Consensus 609 ~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (742)
.+.++.++..+..+...|++....++.+|.
T Consensus 309 ~~~l~~~~~~l~~k~~el~~~l~~~~~~l~ 338 (880)
T PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQ 338 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555554443
No 283
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.03 E-value=2.5e+02 Score=28.05 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=33.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
.=|.++..+-.+|..+|..+..++..+......+..|..
T Consensus 142 ~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~ 180 (218)
T cd07596 142 IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELK 180 (218)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999998888887777765
No 284
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=38.69 E-value=55 Score=38.73 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=26.4
Q ss_pred CccEEEEeecCC-CC--ceEEEEeCCHHHHHHHHHHHH
Q 004616 87 KKLLTVLFPDGR-DG--RAFTLKAETSEDLYEWKTALE 121 (742)
Q Consensus 87 Kk~~fvit~~~~-~g--rty~fqAdSeeE~~eWi~AL~ 121 (742)
.++.|.++.-.. .+ ..|+|.|+++.|+++||.|+.
T Consensus 554 ~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 554 RPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred ccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence 346777765221 23 479999999999999999985
No 285
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.50 E-value=1.2e+02 Score=29.98 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=44.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 004616 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-----ALHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~r~~Le~~V~~L~~~L~~ 639 (742)
.+..|+..-.+|+.+++.--+.+..|++.+..-.. .+...-.+|++++..|+.+|+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777888888888888888888888766555 4467777888888888888864
No 286
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=38.38 E-value=5.7e+02 Score=32.70 Aligned_cols=19 Identities=0% Similarity=-0.193 Sum_probs=11.1
Q ss_pred ccccCCCHHHHHHHHHHhh
Q 004616 201 ILRQAADVEEVDRRVQEYE 219 (742)
Q Consensus 201 IFR~sg~~~~v~~L~~~ld 219 (742)
.|++.|.......+...+.
T Consensus 109 ~~~~n~~~~~~~~~~~~l~ 127 (1164)
T TIGR02169 109 YYYLNGQRVRLSEIHDFLA 127 (1164)
T ss_pred eEEECCccccHHHHHHHHH
Confidence 4667776555555555554
No 287
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.37 E-value=89 Score=36.23 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=42.1
Q ss_pred ccCCCCchHHHHHHHhhhhh---HHHHHHHHHHhhhhhhhhHhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 572 ESIDSSGEEELAIQRLEITK---NDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQL 637 (742)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~Le~~V~~L~~~L 637 (742)
.-|+-..++-...-+|+... .+|+.+|+++ +..++ ++++.+.++=.+||.|+.+|+.|+
T Consensus 56 ~vV~~~FddkVnqSALteqQ~kasELEKqLaaL-------rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 56 GVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEI-------RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666554 7888888877 33333 556667777778999999999998
No 288
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=38.33 E-value=4.6e+02 Score=29.12 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 670 AELEEIALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (742)
++.++++.++.++..++.++..++.+|.
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556666666666555555543
No 289
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.08 E-value=4e+02 Score=32.44 Aligned_cols=113 Identities=24% Similarity=0.245 Sum_probs=68.9
Q ss_pred CCcccccccCcccCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHH--HHHHHHHHHHHHHH
Q 004616 554 AKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ--ALHERRLALEQDVS 631 (742)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~Le~~V~ 631 (742)
+++++.|-| ++--+-+||--..+-|+.-.-.| -+.-|--|..|=+ ...-.-.-|++|-.
T Consensus 654 ~~~~tawer----------------eE~~l~~rL~dSQtllr~~v~~e---qgekqElL~~~~~l~s~~~q~sllraE~~ 714 (961)
T KOG4673|consen 654 SKAATAWER----------------EERSLNERLSDSQTLLRINVLEE---QGEKQELLSLNFSLPSSPIQLSLLRAEQG 714 (961)
T ss_pred hhhhhHHHH----------------HHHHHHHhhhhHHHHHHHHHHHH---hhhHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 466777866 34456678877666666555444 1112222221111 11112234788889
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 632 RLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (742)
Q Consensus 632 ~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (742)
+|+++|.+|++--+-++.-+ ..+=+||..++..+++||+.+..++..+.|+.+.
T Consensus 715 ~l~~~le~e~nr~~~~~~e~-----------------~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~ 768 (961)
T KOG4673|consen 715 QLSKSLEKERNRAAENRQEY-----------------LAAQEEADTLEGRANQLEVEIRELKRKHKQELQE 768 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999988666554422 2344677888888888888888877777766553
No 290
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.93 E-value=9e+02 Score=30.20 Aligned_cols=133 Identities=11% Similarity=0.176 Sum_probs=79.2
Q ss_pred cccccchHHHhhhCCCCcHHHHHHHHHHHhc--C---CCcCCccccCCCHHHHHHHHHHhhcCCcCCCCCCCccchhhhH
Q 004616 164 LVVGRPILLALEDIDGGPSFLEKALRFLEKF--G---TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (742)
Q Consensus 164 ~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~--G---l~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~D~h~vA~lL 238 (742)
..|-.+|--++.....+-.++..+|.+|... + ++.+..|-.+-+...++.++-.+-.. +....+++.|--=|
T Consensus 321 ~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~---La~esni~~ILrE~ 397 (968)
T KOG1060|consen 321 TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSN---LANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHH---HhhhccHHHHHHHH
Confidence 3444455555555666777788888777642 2 44556667888888888887665432 11122333333334
Q ss_pred HHHhhhCCCCC-----------------CChhhHHHHHHHHhcCCH---HHHHHHHHHHHhccCChhHHHHHHHHHHHHh
Q 004616 239 KHVLRELPSSP-----------------VPASCCTALLEAYKIDRK---EARISAMRSAILETFPEPNRRLLQRILRMMH 298 (742)
Q Consensus 239 K~fLReLPePL-----------------lp~~l~~~~l~~~~~~~~---~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~ 298 (742)
+.|.+.-+..+ ++..+.+-++..+...+. .+-+..||.+| +.=|..|..+|.+|..+|.
T Consensus 398 q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll-q~~p~~h~~ii~~La~lld 476 (968)
T KOG1060|consen 398 QTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL-QKDPAEHLEILFQLARLLD 476 (968)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhChHHHHHHHHHHHHHhh
Confidence 44444444221 223344445555544432 34567788855 7889999999999999886
Q ss_pred hc
Q 004616 299 TI 300 (742)
Q Consensus 299 ~V 300 (742)
.+
T Consensus 477 ti 478 (968)
T KOG1060|consen 477 TI 478 (968)
T ss_pred hh
Confidence 54
No 291
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=37.85 E-value=4.8e+02 Score=27.05 Aligned_cols=37 Identities=11% Similarity=0.237 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (742)
|-.+-++++.-..-+|.++..||++|..|+.+..++.
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456788999999999999999999999988765443
No 292
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.82 E-value=1e+02 Score=31.38 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004616 619 LHERRLALEQDVSRLQEQLQ 638 (742)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~ 638 (742)
+-++..+|++++.+|+++|+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666665
No 293
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=37.73 E-value=1.5e+02 Score=29.43 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (742)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (742)
.|..|+.+|..|.+.|+.+|...|.-+..- -..+-..+++|..=|+.||+++-.|+.++..+..+.
T Consensus 54 ~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~------Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 54 LLREDNEQLETQYEREKELRKQAEEELLEL------EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 456677777777778887777666432100 012334567777777788887777777776665543
No 294
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.68 E-value=5.6e+02 Score=33.84 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
..|.+..++-.++..++.++..|+.++..+..++...+.
T Consensus 967 ~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~k 1005 (1311)
T TIGR00606 967 GKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQ 1005 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777766666665554
No 295
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=37.59 E-value=7.9e+02 Score=30.17 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhcC
Q 004616 664 MDSKTRAELEEIALAEAD--------------VARLKQKVAELHHQLNQQRQHHYG 705 (742)
Q Consensus 664 ~p~~~~~ll~eia~~E~~--------------v~~le~~~~~l~~~l~~~~~~~~~ 705 (742)
+.+..++|..+++.++.+ |..|+.++.+|+.++.+|...-..
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~ 341 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITK 341 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888864 567788888888888877665433
No 296
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.58 E-value=2.1e+02 Score=33.32 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 669 RAELEEIALAEADVARLKQKVAELHHQLNQ 698 (742)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (742)
+++-.|+..|..++..|...+.+|+.||..
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677778888888899999999999888853
No 297
>PRK03918 chromosome segregation protein; Provisional
Probab=37.57 E-value=5.1e+02 Score=32.27 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 624 LALEQDVSRLQEQLQAERDLRAALE 648 (742)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~Le 648 (742)
..++..+..|+..++....++..++
T Consensus 348 ~~~~~~~~~l~~~~~~l~~~~~~~~ 372 (880)
T PRK03918 348 KELEKRLEELEERHELYEEAKAKKE 372 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666554
No 298
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=37.44 E-value=35 Score=41.73 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (742)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~----~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (742)
++++.+|+..|..|.+.|..-......++..+........ ....+..+...|-.+|..||.++.+|++++..|..+
T Consensus 453 ~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 453 DEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp -----------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666665555554555544432211111 112334556678889999999999999999999999
Q ss_pred HHH
Q 004616 696 LNQ 698 (742)
Q Consensus 696 l~~ 698 (742)
|.+
T Consensus 533 l~~ 535 (722)
T PF05557_consen 533 LEK 535 (722)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 299
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.28 E-value=77 Score=27.73 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=29.6
Q ss_pred HHHHhhhhhHHHHHHH---HHHhhhhh----hhhHhHHHHHHHHHHH
Q 004616 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQALHER 622 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~ 622 (742)
-|+|||.-|.++...| -.||||+- ++..-+.-||....+|
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er 68 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAER 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHH
Confidence 4899999999999887 56899884 5555566666655544
No 300
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=37.04 E-value=1.1e+02 Score=25.62 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (742)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (742)
++.|+.||+++|.+=..--..++.-|+++.-.-.-|..+= ...-+-++-++.++..|++.+..|+
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVv---e~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVV---EKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHH---HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677777777777655555555555543211001232222 3334445566777788888777663
No 301
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.76 E-value=5.3e+02 Score=28.74 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=50.7
Q ss_pred HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHH
Q 004616 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALA 678 (742)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~ 678 (742)
++---+|+-||..|..-++ + .-+-|.|...|-+.|.++.....+|..--. .++..++.+=.+-|
T Consensus 137 ~~~~EEn~~lqlqL~~l~~---e-~~Ekeeesq~LnrELaE~layqq~L~~eyQ---atf~eq~~ml~kRQ--------- 200 (401)
T PF06785_consen 137 RHLREENQCLQLQLDALQQ---E-CGEKEEESQTLNRELAEALAYQQELNDEYQ---ATFVEQHSMLDKRQ--------- 200 (401)
T ss_pred HHHHHHHHHHHHhHHHHHH---H-HhHhHHHHHHHHHHHHHHHHHHHHHHHHhh---cccccchhhhHHHH---------
Confidence 3333567777777763332 2 234566778888888888777777665433 45555544433433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004616 679 EADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 679 E~~v~~le~~~~~l~~~l~~~~ 700 (742)
+-|.+||.+|.+|-+.+..--
T Consensus 201 -~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 201 -AYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766554433
No 302
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.73 E-value=4.4e+02 Score=29.01 Aligned_cols=24 Identities=25% Similarity=0.518 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 613 ERRKQALHERRLALEQDVSRLQEQ 636 (742)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~ 636 (742)
++.+..+.+...+||.+...|+++
T Consensus 70 E~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 70 EKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555533
No 303
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.68 E-value=2.8e+02 Score=25.52 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (742)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (742)
..+.+.++++-..|.+...+|+.++.+=..+...|+..-
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566677777778888888888888788888888765
No 304
>PRK11281 hypothetical protein; Provisional
Probab=36.62 E-value=4.2e+02 Score=34.43 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=35.3
Q ss_pred HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (742)
..|..+|..+|.=...|..-...+-..+|+.|..||..+.+
T Consensus 212 ~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 212 RKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999998888888888888899999999998876
No 305
>PLN02320 seryl-tRNA synthetase
Probab=36.56 E-value=2e+02 Score=33.88 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
..+.+|++|+..|-.++..||+++..+..+|.+.-.
T Consensus 130 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 130 SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888888777777654
No 306
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.52 E-value=8.1e+02 Score=29.94 Aligned_cols=115 Identities=24% Similarity=0.230 Sum_probs=73.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHh--h----hhhhhhHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004616 582 LAIQRLEITKNDLRHRIAKEA--R----GNAILQASLERRK------QALHERRLALEQDVSRLQEQLQAERDLRAALE- 648 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~------~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le- 648 (742)
..||.|+-.+..+-.++.+=+ | -+..||.-+++=. ..++.+-+-||-++..|+.+|+....++.-+-
T Consensus 248 dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~ 327 (716)
T KOG4593|consen 248 DQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGS 327 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 356666666655555543222 1 2345555554322 34556667799999999999999887776521
Q ss_pred ------------------HhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 649 ------------------VGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (742)
Q Consensus 649 ------------------~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (742)
..++....++..|..+|..+..+|.|.-.==+.+.-.+.++.+|+-.|
T Consensus 328 ~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl 393 (716)
T KOG4593|consen 328 LRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETL 393 (716)
T ss_pred cCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 234444557788999999999988876554455555666666666553
No 307
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=36.49 E-value=4.1e+02 Score=28.58 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004616 613 ERRKQALHERRLALEQDVSRLQE---QLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKV 689 (742)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~---~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~ 689 (742)
.+|.+.++.+-..|+.++.+|+. .+|...+++. -.+++.+.++-+..+..+|+.++
T Consensus 167 d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~---------------------~~~e~~~r~~~lr~~~~~l~~el 225 (264)
T PF07246_consen 167 DRRNQILSHEISNLTNELSNLRNDIDKFQEREDEKI---------------------LHEELEARESGLRNESKWLEHEL 225 (264)
T ss_pred hhHHHHHHHHHHHhhhhHHHhhchhhhhhhhhhHHH---------------------HHHHHHHhHhhhHHHHHHHHHHH
Confidence 55555555555556666666655 3333333322 12556666676777777788777
Q ss_pred HHHHHHHHHHHhhhcCC
Q 004616 690 AELHHQLNQQRQHHYGS 706 (742)
Q Consensus 690 ~~l~~~l~~~~~~~~~s 706 (742)
.+.+.....+|+...-+
T Consensus 226 ~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 226 SDAKEDMIRLRNDISDF 242 (264)
T ss_pred HHHHHHHHHHHhcccch
Confidence 77777777777754443
No 308
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.41 E-value=6.8e+02 Score=33.64 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 670 AELEEIALAEADVARLKQKVAELHH 694 (742)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~ 694 (742)
++-+++..+|.++..|+.++.++..
T Consensus 380 eleeEleelEeeLeeLqeqLaelqq 404 (1486)
T PRK04863 380 ENEARAEAAEEEVDELKSQLADYQQ 404 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555444444433
No 309
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=36.34 E-value=1.2e+02 Score=27.48 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHhhc
Q 004616 623 RLALEQDVSRLQEQLQA------ERDLRAALEVGLS 652 (742)
Q Consensus 623 r~~Le~~V~~L~~~L~~------e~~~~~~Le~~l~ 652 (742)
...|+.++++||+||.. |+=-|.||+.+|.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~ 39 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLG 39 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 45788899999998864 6666777777764
No 310
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.15 E-value=4.2e+02 Score=25.85 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=57.4
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 004616 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDL-RAALEVG 650 (742)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~r~~Le~~V~~L~~~L~~e~~~-~~~Le~~ 650 (742)
-++...++.|=..+..|...++-+.++-+.||..+++-...+ .++-..||+.+..++.+..++..= |-+|.-+
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 456677788888888999999999999999999887555433 556777999999999988877655 7777654
No 311
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=35.71 E-value=4.6e+02 Score=26.93 Aligned_cols=76 Identities=25% Similarity=0.233 Sum_probs=47.8
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL----------HERRLALEQDVSRLQEQLQAERDLRAAL 647 (742)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~r~~Le~~V~~L~~~L~~e~~~~~~L 647 (742)
.+.|.---+||+-|.-+...|+.--..=..||+.+..++... +.-=.+|+.+-..+|.||.+=..==..|
T Consensus 101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778999999999999765555567898887655522 1222335555555666665433333446
Q ss_pred HHhhcC
Q 004616 648 EVGLSM 653 (742)
Q Consensus 648 e~~l~~ 653 (742)
++..+.
T Consensus 181 q~q~~~ 186 (192)
T PF11180_consen 181 QRQANE 186 (192)
T ss_pred HHHhcC
Confidence 655543
No 312
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=35.68 E-value=2.5e+02 Score=30.16 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (742)
Q Consensus 614 ~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (742)
|+|.+...+|.-+=+-+++|+++- +.|..+..-|+.++.+|..+|.+++
T Consensus 213 rnreaa~Kcr~rkLdrisrLEdkv-------------------------------~~lk~~n~~L~~~l~~l~~~v~e~k 261 (279)
T KOG0837|consen 213 RNREAASKCRKRKLDRISRLEDKV-------------------------------KTLKIYNRDLASELSKLKEQVAELK 261 (279)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-------------------------------hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 445566666666656666665543 3444555567777888888888777
Q ss_pred HHHHHHHh
Q 004616 694 HQLNQQRQ 701 (742)
Q Consensus 694 ~~l~~~~~ 701 (742)
+++-+...
T Consensus 262 ~~V~~hi~ 269 (279)
T KOG0837|consen 262 QKVMEHIH 269 (279)
T ss_pred HHHHHHHh
Confidence 76655443
No 313
>PRK14127 cell division protein GpsB; Provisional
Probab=35.66 E-value=61 Score=30.21 Aligned_cols=31 Identities=35% Similarity=0.363 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 669 RAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (742)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (742)
.++..|++-|++++.+|++++.+++.++..-
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4455666677788888888888777777643
No 314
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=35.58 E-value=2.5e+02 Score=27.71 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=50.4
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASL---ERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (742)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~ 643 (742)
.++|+...-||.-..++..++.-=|+-=..+++.+ ....+++.+++.++|.-+.+|+.-|......
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778899988999888855554444455554 5556688999999999999999998876554
No 315
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=35.54 E-value=1.2e+02 Score=26.08 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (742)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (742)
.+++.++.-|++|..+|..|+++...|.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5788899999999999999999855554
No 316
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=35.08 E-value=17 Score=28.97 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=18.8
Q ss_pred CCCcEEEEEEEeCCeEEEEcC
Q 004616 34 WKSWKKRWFILTRTSLVFFKN 54 (742)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd 54 (742)
.+.|.|.|..+.+.+|..||=
T Consensus 27 Vr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred HHHHhhceEEeccceEEEEEE
Confidence 567999999999999999973
No 317
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.90 E-value=6.7e+02 Score=32.70 Aligned_cols=63 Identities=27% Similarity=0.267 Sum_probs=30.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhh-------HhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 004616 583 AIQRLEITKNDLRHRIAKEARGNAILQ-------ASLERRKQALHER---RLALEQDVSRLQEQLQAERDLRA 645 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---r~~Le~~V~~L~~~L~~e~~~~~ 645 (742)
.|++||.....++.++..-.+....++ ..++.++..+..+ ..+|++.+..+.+...+....+.
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 368 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666654444433333 3333333333333 34444444444444444444444
No 318
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=34.75 E-value=4.9e+02 Score=27.44 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 004616 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ-LNQ 698 (742)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~-l~~ 698 (742)
+.+|.+|-..+-++|+.=-.=...||..+..+ =..-......|..+.+++..|+.+|+.++.. |+.
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa----------~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQA----------ESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44465655555555533222222355554321 1123457788889999999999999999888 543
No 319
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=34.64 E-value=7e+02 Score=31.76 Aligned_cols=19 Identities=0% Similarity=-0.162 Sum_probs=8.5
Q ss_pred CccccCCCHHHHHHHHHHh
Q 004616 200 GILRQAADVEEVDRRVQEY 218 (742)
Q Consensus 200 GIFR~sg~~~~v~~L~~~l 218 (742)
+.|++.|.......+...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~l 128 (1179)
T TIGR02168 110 SEYFINGQPCRLKDIQDLF 128 (1179)
T ss_pred ceeeECCCcccHHHHHHHH
Confidence 3455665443333333333
No 320
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=34.61 E-value=4.8e+02 Score=31.43 Aligned_cols=24 Identities=13% Similarity=0.430 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 667 KTRAELEEIALAEADVARLKQKVA 690 (742)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~ 690 (742)
.++..+.+|..+..++-.++..+.
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~ 464 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIR 464 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666665553
No 321
>PF13514 AAA_27: AAA domain
Probab=34.42 E-value=5.7e+02 Score=33.11 Aligned_cols=110 Identities=23% Similarity=0.281 Sum_probs=56.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------Hhhc
Q 004616 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE---------VGLS 652 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le---------~~l~ 652 (742)
.++.+|+..+.+|+..- ...+..+.. ........++...|+.++..|+.+++.=..++.++- .-|.
T Consensus 154 ~~l~~l~e~~~~l~~~~----~~~~~y~~l-~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~ 228 (1111)
T PF13514_consen 154 QALKELKELERELREAE----VRAAEYQEL-QQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELA 228 (1111)
T ss_pred HHHHHHHHHHHHHHHHh----ccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555554444444333 233333322 233334444455555555555555544444433322 2222
Q ss_pred CCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 653 MSSGQF-SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 653 ~~~~~~-~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (742)
.- +.+ .+|.........+..+++.++..+..++.++..|+.++.
T Consensus 229 ~l-~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 273 (1111)
T PF13514_consen 229 EL-GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELD 273 (1111)
T ss_pred hc-CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222 355566666777777788888888888777777766554
No 322
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=34.14 E-value=3.8e+02 Score=30.98 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=45.2
Q ss_pred hhhhhhHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHH
Q 004616 604 GNAILQASLE----RRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALA 678 (742)
Q Consensus 604 ~~~~~~~~~~----~~~~~~~~~r~~Le~~V~~L~~~L~~-e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~ 678 (742)
.|++.++.++ .|+.....-+.-|++++.+++++|.+ |..+...... .|.+ +|.....+..+|+.+
T Consensus 140 ~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~-----~~~~-----~~~~~~~~~~~l~~l 209 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQE-----NGGI-----LPDQEGDYYSEISEA 209 (498)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----Cccc-----CccchhhHHHHHHHH
Confidence 3666665554 34555566777899999999999875 4444443221 1211 222333344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004616 679 EADVARLKQKVAELHHQLNQ 698 (742)
Q Consensus 679 E~~v~~le~~~~~l~~~l~~ 698 (742)
+..+..++.++..++.++..
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~ 229 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDA 229 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444444333
No 323
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.04 E-value=3.7e+02 Score=28.93 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 673 EEIALAEADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (742)
.+|.-+|++|..|+..|..|+.+...=|
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQDPR 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 4566667777777777777666655333
No 324
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.01 E-value=3.4e+02 Score=25.78 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=44.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le 648 (742)
.|+.|..--.+++..|+.=-..-...+..+..-+..-.++|..|+.++..++.++..=..=..+|-
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445556666665445555666677777778888899999999999988876555555544
No 325
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.84 E-value=1.6e+02 Score=30.22 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 674 EIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
.+..+.++|..+|+||.-|..-|..-.+
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~ 188 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQ 188 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999998855443
No 326
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.42 E-value=2.8e+02 Score=23.86 Aligned_cols=56 Identities=25% Similarity=0.391 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhhhhhHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 004616 593 DLRHRIAKEARGNAILQASLER---RKQALHERRLALEQDVSRLQEQLQA-ERDLRAALE 648 (742)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~~Le~~V~~L~~~L~~-e~~~~~~Le 648 (742)
.|..||..-+-..+.||--++. +..++.+.+.+|+++..+|+..-.. ...++.+|.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655533 3335667788899999888854332 333444443
No 327
>PF13514 AAA_27: AAA domain
Probab=33.11 E-value=8.6e+02 Score=31.50 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=78.8
Q ss_pred cccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhH------------HHHHHHHHHHHHH---HHHHHHHHHH
Q 004616 571 VESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASL------------ERRKQALHERRLA---LEQDVSRLQE 635 (742)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~r~~---Le~~V~~L~~ 635 (742)
.+.++++.+....+++++.....++.+|..-...-+.++..+ ...=.++.+.+.. .++|+.+++.
T Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~ 310 (1111)
T PF13514_consen 231 GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEA 310 (1111)
T ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888777777777777777777644333333333322 1122244444433 4556666666
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 636 QLQAERDLRAALEVGLSMSSGQF------SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (742)
Q Consensus 636 ~L~~e~~~~~~Le~~l~~~~~~~------~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (742)
++..-..--..|..-|+ +.... .+|......+++|+.+-..++..+..++.++.+....+.+-+.+
T Consensus 311 e~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 382 (1111)
T PF13514_consen 311 ELAELEAELRALLAQLG-PDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAE 382 (1111)
T ss_pred HHHHHHHHHHHHHHhcC-CCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554433333444455 22111 13333445778888888999999999999998888888776664
No 328
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=33.10 E-value=4.7e+02 Score=31.86 Aligned_cols=78 Identities=27% Similarity=0.370 Sum_probs=51.4
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHH---H-Hhh-cCCCCCCC------CC--CCCChhHHHHHHHHHHHHHHHHHHH
Q 004616 626 LEQDVSRLQE------QLQAERDLRAAL---E-VGL-SMSSGQFS------SS--RGMDSKTRAELEEIALAEADVARLK 686 (742)
Q Consensus 626 Le~~V~~L~~------~L~~e~~~~~~L---e-~~l-~~~~~~~~------~~--~~~p~~~~~ll~eia~~E~~v~~le 686 (742)
|..+|.+++. .+++|+++|+-= + .|| ....+++- .. ..--.+-++..+==+.||.++++|+
T Consensus 673 L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk 752 (786)
T PF05483_consen 673 LLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLK 752 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666654 577888887522 1 233 22223221 00 1123455677777889999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 004616 687 QKVAELHHQLNQQRQHH 703 (742)
Q Consensus 687 ~~~~~l~~~l~~~~~~~ 703 (742)
-.+.+|+.||-.+|.+-
T Consensus 753 ~el~slK~QLk~e~~eK 769 (786)
T PF05483_consen 753 NELSSLKKQLKTERTEK 769 (786)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999999864
No 329
>PRK11239 hypothetical protein; Provisional
Probab=33.04 E-value=66 Score=33.37 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (742)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (742)
-+|-++|+.||++|+.|+.++..|..++
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555555443
No 330
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=32.96 E-value=2.5e+02 Score=29.99 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 625 ALEQDVSRLQEQLQAERDLRAALEVG 650 (742)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~Le~~ 650 (742)
+|+.+|..|+.+|++.+.|-.-||.=
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~D 28 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLEND 28 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666643
No 331
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=32.94 E-value=35 Score=40.52 Aligned_cols=154 Identities=14% Similarity=-0.009 Sum_probs=91.8
Q ss_pred CCCCCCCcccccchHHHhhhCC-----CCcHHHHHHHHHHHhcCCCcCCccccCCCHHHHHHHHHH-hhcC-CcCCCCCC
Q 004616 157 DKRPVKSLVVGRPILLALEDID-----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-KTEFSADE 229 (742)
Q Consensus 157 ~k~~~~~~vFG~pL~~ll~~~~-----~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~-ld~g-~~~~~~~~ 229 (742)
...+.+..+++ -|..+..... -.+.-..+|..+....+....|.|+.+|. .+..+++. .+.+ ++.+..+.
T Consensus 31 ~~~pl~~~~e~-~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~e~e~~~~kie~~~d~ 107 (577)
T KOG4270|consen 31 VVFPLRKIIEV-ELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLFRLPGA--KIDTLKEEEEECGMKIEQPTDQ 107 (577)
T ss_pred ccCcccchhhh-hhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhccccccCcc--hhhhhhchHHhhcCccccCcch
Confidence 34555566777 5544443211 23555578888888899999999999993 34444443 3333 36666777
Q ss_pred CccchhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHH----HHHHHHHHHhccCChhHHHHHHHHHHHHhhcccccc
Q 004616 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEA----RISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH 305 (742)
Q Consensus 230 D~h~vA~lLK~fLReLPePLlp~~l~~~~l~~~~~~~~~~----ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~ 305 (742)
..+++.++.+.+++.+ ++.++.-|+..+.......... ...+++. ...|..|+ +-+++.|+... .
T Consensus 108 ~~~~~~~f~~~~~~~~--f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~----~ 176 (577)
T KOG4270|consen 108 RHADHVTFDRKEGEYL--FLGLPVEFQPDYHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG----R 176 (577)
T ss_pred hhhhhhhhhhhcchhh--hccchhhhccccccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----h
Confidence 8899999999999988 6766665554443322211111 2334443 35677777 56666666553 3
Q ss_pred ccCCCccchhhhhcccccC
Q 004616 306 ENRMTPSAVAACMAPLLLR 324 (742)
Q Consensus 306 ~NkMta~NLAivfaP~Llr 324 (742)
.+.|.=-+...+|.++--.
T Consensus 177 l~~e~Gl~eEGlFRi~~~~ 195 (577)
T KOG4270|consen 177 LLLEGGLKEEGLFRINGEA 195 (577)
T ss_pred hhhhcCccccceeccCCCc
Confidence 4445555555555555443
No 332
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.89 E-value=3e+02 Score=31.51 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
+.+|++++..+-++|..||+++..+..++.+...
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888999999999888888887654
No 333
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=32.84 E-value=93 Score=34.56 Aligned_cols=8 Identities=50% Similarity=0.762 Sum_probs=5.5
Q ss_pred hcccccCC
Q 004616 735 AWGSYFGV 742 (742)
Q Consensus 735 ~~~~~~~~ 742 (742)
||+.|+|.
T Consensus 319 a~isY~G~ 326 (344)
T PF12777_consen 319 AFISYLGP 326 (344)
T ss_dssp HHHHCCCC
T ss_pred HHHHHcCC
Confidence 57777773
No 334
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=32.63 E-value=62 Score=37.41 Aligned_cols=59 Identities=29% Similarity=0.357 Sum_probs=41.1
Q ss_pred HHHHhhhhh--hhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 004616 598 IAKEARGNA--ILQA-SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (742)
Q Consensus 598 ~~~~~~~~~--~~~~-~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~ 656 (742)
|-+|+++|- +||. ++---=-++...-.+|+||-++++++|.+|+..|+-||.-|-+..+
T Consensus 597 ~~ee~r~~~~~vleekslvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~l~ 658 (661)
T KOG2070|consen 597 LMEETRSNGQSVLEEKSLVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKMLK 658 (661)
T ss_pred HHHhcccccceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667653 3332 1111223666777789999999999999999999999988754433
No 335
>PRK11546 zraP zinc resistance protein; Provisional
Probab=32.35 E-value=1.5e+02 Score=28.96 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=35.6
Q ss_pred hhhHHHHHHH-HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 004616 589 ITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDL-RAALEV 649 (742)
Q Consensus 589 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~-~~~Le~ 649 (742)
..-.+||.+| +|.+-=||.+++. .+=.++-.+|-+|+..|+.+|.+++.. +..++.
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~-----~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTAN-----PPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555 5666666665544 233455678999999999999988753 333443
No 336
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.25 E-value=5.5e+02 Score=30.90 Aligned_cols=87 Identities=26% Similarity=0.386 Sum_probs=46.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 004616 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~ 661 (742)
-.|.+++.+=..|+ ..|..|++-++..|......+..|++=-.+....++..+.+
T Consensus 422 ~~i~~~~~~ve~l~-------~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei------------------ 476 (652)
T COG2433 422 KRIKKLEETVERLE-------EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREI------------------ 476 (652)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------------------
Confidence 34445555444444 56778888888777665555555544444444444444433
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (742)
+++-.+|..||-++.+=+..|..|...|.+-+
T Consensus 477 -------~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 477 -------RARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544
No 337
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.20 E-value=3.6e+02 Score=34.09 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=33.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcCCccccccc
Q 004616 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ--------HHYGSLSDACDR 713 (742)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~--------~~~~s~~~~~~~ 713 (742)
+.....++..+++-++.++..++..+..+..++.+.+. ...|-.|..|.+
T Consensus 408 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg~ 465 (908)
T COG0419 408 IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQ 465 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 34445555566677777777777777777777777543 114678999993
No 338
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.07 E-value=8.7e+02 Score=30.20 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
+-+.|=-|+..|-..+--|+++|.+.+..+.-+++
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt 472 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT 472 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHH
Confidence 33444445555555555555555555555444444
No 339
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.90 E-value=3.5e+02 Score=24.55 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 623 RLALEQDVSRLQEQLQAERDLRAALEVGL-----SMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l-----~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (742)
...|-+....|..++.+=..+...|+..= -+.-|..-+....+.-...|=..+..+|.+|.+|+.++..+..++.
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555554444444444321 1112222222333333333444567777777777777777777766
Q ss_pred HHHh
Q 004616 698 QQRQ 701 (742)
Q Consensus 698 ~~~~ 701 (742)
.-+.
T Consensus 95 elk~ 98 (105)
T cd00632 95 ELQE 98 (105)
T ss_pred HHHH
Confidence 5443
No 340
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=31.88 E-value=4.1e+02 Score=32.00 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004616 667 KTRAELEEIALAEADVARLK 686 (742)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le 686 (742)
+-.+|++||.-|-.-.+-||
T Consensus 175 qKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 175 QKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HHhHHHHHHHHhHHHHHHHH
Confidence 44567777766665555555
No 341
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=31.74 E-value=1.1e+02 Score=31.97 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCCCC
Q 004616 625 ALEQDVSRLQEQLQ--AERDLRAALEVGLSMSSGQF 658 (742)
Q Consensus 625 ~Le~~V~~L~~~L~--~e~~~~~~Le~~l~~~~~~~ 658 (742)
.|-|-|.+||.||. +|+++|++.-+-.......+
T Consensus 74 DLVQLV~ELQgQLd~lEeRsiRR~~NS~~~~~~d~l 109 (216)
T PF07957_consen 74 DLVQLVGELQGQLDNLEERSIRRTVNSTKTDDDDLL 109 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Confidence 48899999999997 79999999888776665433
No 342
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.73 E-value=6.4e+02 Score=33.34 Aligned_cols=120 Identities=11% Similarity=0.179 Sum_probs=65.5
Q ss_pred cccCCCCchHHHHHHHhhhhhHHHHHHHHH---Hhhhh------hhhhHhHHHHHH----------HHHHHHHHHHHHHH
Q 004616 571 VESIDSSGEEELAIQRLEITKNDLRHRIAK---EARGN------AILQASLERRKQ----------ALHERRLALEQDVS 631 (742)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~----------~~~~~r~~Le~~V~ 631 (742)
.++++....+...|.|+...-.+|+.+|.. ++.+. ..||..+..-+. .+.+.+..++.++.
T Consensus 781 ~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~ 860 (1311)
T TIGR00606 781 EESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ 860 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666677777777777777742 22111 224444333222 22455666777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 632 RLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 632 ~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (742)
+||.++.+-.+.+..|..++... ..|=+...+|-+++..+.++|..+++++..|+..+.
T Consensus 861 ~Lq~ki~el~~~klkl~~~l~~r-------~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~ 919 (1311)
T TIGR00606 861 HLKSKTNELKSEKLQIGTNLQRR-------QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE 919 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 88777766666666666655421 123344555556666665555555555555544443
No 343
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.55 E-value=1.6e+02 Score=25.59 Aligned_cols=37 Identities=35% Similarity=0.490 Sum_probs=26.4
Q ss_pred HHHHhhhhhHHHHHHHH---HHhhhhh----hhhHhHHHHHHHH
Q 004616 583 AIQRLEITKNDLRHRIA---KEARGNA----ILQASLERRKQAL 619 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~ 619 (742)
-|+|||.-|..+...|. .|||+|- ++-.-+.-||..-
T Consensus 12 RiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~d~ 55 (74)
T PF10073_consen 12 RIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRLRKKDP 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcCCH
Confidence 48899999999998884 5888873 4555555555543
No 344
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=31.39 E-value=8.3e+02 Score=28.29 Aligned_cols=72 Identities=21% Similarity=0.088 Sum_probs=40.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhh-----hHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 004616 581 ELAIQRLEITKNDLRHRIAKEARGNAIL-----QASLERRKQALHERRL------------ALEQDVSRLQEQLQAERDL 643 (742)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~r~------------~Le~~V~~L~~~L~~e~~~ 643 (742)
+..+..=|..=|+|-+|+++++=.-|.- +..+..-+.++.++|. ++-+-|.+||.||-+.+.=
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666777777775544332211 1122222334444432 2446788999999888777
Q ss_pred HHHHHHhhc
Q 004616 644 RAALEVGLS 652 (742)
Q Consensus 644 ~~~Le~~l~ 652 (742)
...|...+.
T Consensus 302 L~~L~~~~~ 310 (434)
T PRK15178 302 YAQLMVNGL 310 (434)
T ss_pred HHHHHhhcC
Confidence 666765543
No 345
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=31.32 E-value=1.3e+02 Score=24.95 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (742)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~ 650 (742)
.+.+|-..|+.|+.|++..+..=...|.|=+..
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAeal 57 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEAL 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777789999999999888888877776554
No 346
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.17 E-value=6e+02 Score=31.60 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=32.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (742)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~ 650 (742)
+-|..|++||..+.+++.+..+- +.+...+++.++.+.+.+.+|+++-.++.+++++| .+.+|+.|
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~----~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~e--a~~~~~~a 577 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHL----EKLLKEQEKLKKELEQEMEELKERERNKKLELEKE--AQEALKAL 577 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 45667777777777766654321 12233334444444455555555444444444433 23444443
No 347
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.13 E-value=6.2e+02 Score=32.30 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 668 TRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (742)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (742)
...|-.||..+++.|...|..+..++.+|..
T Consensus 845 ~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~ 875 (1174)
T KOG0933|consen 845 ISSLKSELGNLEAKVDKVEKDVKKAQAELKD 875 (1174)
T ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Confidence 3445555555555555555555544444443
No 348
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.05 E-value=7.7e+02 Score=28.44 Aligned_cols=109 Identities=28% Similarity=0.327 Sum_probs=67.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhh---hHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 004616 580 EELAIQRLEITKNDLRHRIAKEARGNAIL---QASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVG--- 650 (742)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~--- 650 (742)
|=...||.|..--|||.|+.|+--+|..+ --.|+++-. .+.+-|.-+|.+-.+ + +=+.||.+|++|
T Consensus 250 dle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--k---elE~lR~~L~kAEke 324 (575)
T KOG4403|consen 250 DLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--K---ELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--H---HHHHHHHHHHHHHHH
Confidence 33457889999999999997765554333 223343332 345556666665555 2 335688999887
Q ss_pred hcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 651 LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 651 l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (742)
|...+ +-+-|...|..|.= .-|.||.+++.|-.+-..||...+
T Consensus 325 le~nS-----~wsaP~aLQ~wLq~--T~E~E~q~~~kkrqnaekql~~Ak 367 (575)
T KOG4403|consen 325 LEANS-----SWSAPLALQKWLQL--THEVEVQYYNKKRQNAEKQLKEAK 367 (575)
T ss_pred HHhcc-----CCCCcHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33222 35567777888763 346667777766665555554443
No 349
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.80 E-value=2.1e+02 Score=30.19 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 004616 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (742)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~ 654 (742)
.+..+-..+++++++|++|+..-...+.-|.-.|...
T Consensus 74 ~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 74 QLERQVASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677778888888877777776666555433
No 350
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=30.61 E-value=69 Score=37.50 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=68.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 004616 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (742)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~ 660 (742)
|..--+-|+-+.+||.||| -||.. ++-+..-+..|..-...|..-|.+|+.=+..|.-+-..+.+-..+
T Consensus 33 E~dr~~WElERaElqariA-------fLqgE----rk~qenlk~dl~rR~kmlE~~lkeerak~~~lq~gte~~~~d~~~ 101 (577)
T KOG0642|consen 33 ERDRARWELERAELQARIA-------FLQGE----RKGQENLKMDLVRRIKMLEFALKEERAKYNKLQPGTELPQLDEKP 101 (577)
T ss_pred hhhhhheehhhhhHHHHHH-------HHhcc----hhhhHHHHHHHHHHHhcccchhHHhhhhhhccccccccccccccc
Confidence 6666778999999999997 45532 233344556677777788888889988888888744545555556
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004616 661 SRGMDSKTRAELEEIALAEADVARLKQK 688 (742)
Q Consensus 661 ~~~~p~~~~~ll~eia~~E~~v~~le~~ 688 (742)
+...-+.+...++.+..+|+...-..+-
T Consensus 102 ~~~~s~~t~~~~~~~~~~~~~~~~w~~~ 129 (577)
T KOG0642|consen 102 VADNSEVTGNTLAAANTLENAILLWKQG 129 (577)
T ss_pred chhcCccccccccccccccchHHHHHHH
Confidence 6666777777888888887765554443
No 351
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=30.51 E-value=2.1e+02 Score=30.89 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004616 611 SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKV 689 (742)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~-~~~~~p~~~~~ll~eia~~E~~v~~le~~~ 689 (742)
.+++-|+...+|.+.||---+-||+|=++..+-+.-. .+|.+-...|. ....|...-+.|-.|+.+=|.-|..||.++
T Consensus 26 QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~-s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl 104 (307)
T PF10481_consen 26 QLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY-SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQL 104 (307)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 3455566666666666666666666655544333211 11222222222 223344445556666666666666666666
Q ss_pred HHHHHHHH
Q 004616 690 AELHHQLN 697 (742)
Q Consensus 690 ~~l~~~l~ 697 (742)
...+.+|.
T Consensus 105 ~s~Kkqie 112 (307)
T PF10481_consen 105 NSCKKQIE 112 (307)
T ss_pred HHHHHHHH
Confidence 66555443
No 352
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=30.37 E-value=3.2e+02 Score=25.48 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (742)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (742)
+|+.=-.|.++|.+|++-+. +...++=. +=+++-..+-||...|+-||..+..|+..|.+++-
T Consensus 6 ~~~q~~~l~~~v~~lRed~r------~SEdrsa~-------SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIR------RSEDRSAA-------SRASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 45555677888888877665 22222111 11334567789999999999999999999988764
No 353
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=30.18 E-value=8.9e+02 Score=27.80 Aligned_cols=110 Identities=26% Similarity=0.322 Sum_probs=71.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 004616 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSR-LQEQLQAERDLRAALEVGLSMSSGQFS 659 (742)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~-L~~~L~~e~~~~~~Le~~l~~~~~~~~ 659 (742)
++.-+=|+.+.++|+.+-. ..|. .+.+|=....+-|..|+-.+.+ ||+--+.|.++ ++||.|+.-..|++.
T Consensus 252 ~~l~~~l~~tan~lr~Q~~---~ve~----af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I-~~le~airdK~~pLK 323 (421)
T KOG2685|consen 252 EALDQTLRETANDLRTQAD---AVEL----AFKKRIRETQDARNKLEWQLAKTLEEIADAENNI-EALERAIRDKEGPLK 323 (421)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhcccccHH
Confidence 3444556677777776543 2232 3466666778888888876655 44444445554 468888876666553
Q ss_pred -----------CC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 660 -----------SS---RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (742)
Q Consensus 660 -----------~~---~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (742)
=| -+-+.--..|+.||-.|...|..|++++.+-+.-|.-
T Consensus 324 VAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~ 376 (421)
T KOG2685|consen 324 VAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKL 376 (421)
T ss_pred HHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2334445789999999999999999999876665443
No 354
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=30.18 E-value=1e+03 Score=28.45 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=18.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Q 004616 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (742)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (742)
+..+++.+--+.+|......=-+.+..|+..+++-+..+
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666444333334444444444444443
No 355
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=29.90 E-value=2.8e+02 Score=35.88 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=12.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH
Q 004616 665 DSKTRAELEEIALAEADVARLK 686 (742)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~le 686 (742)
+..-..|-+|.+.++..+..||
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~ 193 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELE 193 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667776666554443
No 356
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=29.70 E-value=4.8e+02 Score=29.53 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC------------C-C-CCCChhHHHHHHHHHHH
Q 004616 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS------------S-S-RGMDSKTRAELEEIALA 678 (742)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~------------~-~-~~~p~~~~~ll~eia~~ 678 (742)
..|-...+--|..|+....++......=...+..||.||..-.+++. . + -.-+.--.+|+.|+.++
T Consensus 49 ~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li 128 (384)
T PF03148_consen 49 RQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELI 128 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHH
Confidence 44444555556666666666666555555666777777754434332 1 1 33566678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004616 679 EADVARLKQKVAELHHQLNQQR 700 (742)
Q Consensus 679 E~~v~~le~~~~~l~~~l~~~~ 700 (742)
+.--..|++.+.....||..-|
T Consensus 129 ~~~~~lL~~~l~~~~eQl~~lr 150 (384)
T PF03148_consen 129 ENIKRLLQRTLEQAEEQLRLLR 150 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888777777665544
No 357
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=29.23 E-value=6.4e+02 Score=27.25 Aligned_cols=97 Identities=25% Similarity=0.208 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhhhhhhHhHHHHHHHH---------------------------------------------HHHHHHHHH
Q 004616 594 LRHRIAKEARGNAILQASLERRKQAL---------------------------------------------HERRLALEQ 628 (742)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~r~~Le~ 628 (742)
.|..|..|++.|+.|.+.|+..=++. ++-|..|++
T Consensus 108 eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~ 187 (264)
T PF08687_consen 108 EQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLDEDADPEERESLLE 187 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHH
Confidence 35677899999999988886443311 345778888
Q ss_pred HHHHHHHHHHH-----------HHHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 629 DVSRLQEQLQA-----------ERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (742)
Q Consensus 629 ~V~~L~~~L~~-----------e~~~~~~Le~~l~~~~~~~~-~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (742)
--..|+.|+.. |+.++.+|.+.|+.. ++. --.|+-.| -+||.|---||+-|--.|+|+..|+
T Consensus 188 k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~~e--q~~dy~~fv~mK-a~Ll~eqreLddkiklgeEQL~~L~ 261 (264)
T PF08687_consen 188 KRRLLQRQLEDAKELKENLDRRERVVSEILARYLSEE--QLADYRHFVKMK-AALLIEQRELDDKIKLGEEQLEALR 261 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHH--HHHHHHHHHHHH-HHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 88889888875 445555555554310 000 00112112 2588888888888888888887765
No 358
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.89 E-value=1.4e+02 Score=26.79 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (742)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~ 643 (742)
+.-++|-..++..-.+|.+||.+|+.+|..|+.=
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677788888999999999999988753
No 359
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=28.84 E-value=21 Score=34.74 Aligned_cols=25 Identities=32% Similarity=0.694 Sum_probs=20.8
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCC
Q 004616 34 WKSWKKRWFILTRTSLVFFKNDPSA 58 (742)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~~~~ 58 (742)
++.|-|+|+.+.+..|.+||=-+-+
T Consensus 28 VRrWEKKwVtvgDTslRIyKWVPVt 52 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKWVPVT 52 (165)
T ss_pred HHHHhhheEeecccceEEEEeeecc
Confidence 5679999999999999999854433
No 360
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.71 E-value=4.6e+02 Score=24.03 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
...+.-...|=..|..+|..|..|+++...|+.++...+.
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566778888888888888888888776554
No 361
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=28.61 E-value=8.5e+02 Score=30.48 Aligned_cols=62 Identities=29% Similarity=0.265 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (742)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (742)
+.+|+.+-+.||++|+....-=--+|+|+. |+||.++|+++..+-.+--+|+..--++|.+
T Consensus 672 ~eel~Ke~kElq~rL~~q~KkiDh~ERA~R-------------------~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~ 732 (988)
T KOG2072|consen 672 IEELEKERKELQSRLQYQEKKIDHLERAKR-------------------LEEIPLIEKAYDERQEEDRELYEAREKQRIE 732 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------------------HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455666666777777666555555666655 6777777877777666666677666666654
Q ss_pred h
Q 004616 703 H 703 (742)
Q Consensus 703 ~ 703 (742)
.
T Consensus 733 ~ 733 (988)
T KOG2072|consen 733 A 733 (988)
T ss_pred H
Confidence 3
No 362
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.49 E-value=90 Score=31.26 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 670 AELEEIALAEADVARLKQKVAELHHQL 696 (742)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l 696 (742)
+.|.|-..|.++|-||+.++.+|++.|
T Consensus 21 ~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 21 SELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888889999999999999999988
No 363
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.00 E-value=1.4e+02 Score=34.81 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (742)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (742)
+.+..+||++++.|+..++.=.. +.+++=+.|..+|+|+..|++++..+..
T Consensus 75 Q~kasELEKqLaaLrqElq~~sa------------------------q~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNK------------------------QRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh------------------------hhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44667788888887654441001 1123334455677777777777744333
No 364
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=27.93 E-value=7.5e+02 Score=30.39 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=31.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhh----hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 580 EELAIQRLEITKNDLRHRIAKEAR----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (742)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~ 643 (742)
.+..|+.|.....+|+.+++.... .+-.+++. +.++.+-+.++++++.++...++.|...
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l----~~qi~~l~~~i~~e~~~~~~~~~~~~~~ 349 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIADLSTTMLANHPRVVAA----KSSLADLDAQIRSELQKITKSLLMQADA 349 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888877764322 12222222 3333444444555555555555444443
No 365
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=27.92 E-value=2.7e+02 Score=32.22 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004616 588 EITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (742)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~ 653 (742)
|..+++.|.-+..-+--=.+--..+.--|..|+--++.-..--+.|++||+.|+.+|.+++.-|.+
T Consensus 502 eTll~niq~llkva~dnar~qekQiq~Ek~ELkmd~lrerelreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 502 ETLLTNIQGLLKVAIDNARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 366
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=27.47 E-value=6.1e+02 Score=25.02 Aligned_cols=71 Identities=30% Similarity=0.324 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004616 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKV 689 (742)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~ 689 (742)
+.++....++..||....++..+|=..++.-.-...-|+. ...+|+.|-+-..+||+++
T Consensus 32 ~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~---------------------~~~qv~~Lr~~e~~le~~~ 90 (152)
T PF07321_consen 32 AALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEK---------------------WQQQVASLREREAELEQQL 90 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH---------------------HHHHHHHHHHhHHHHHHHH
Confidence 3456667788888988888888888888877777766665 4468888888888888888
Q ss_pred HHHHHHHHHHHh
Q 004616 690 AELHHQLNQQRQ 701 (742)
Q Consensus 690 ~~l~~~l~~~~~ 701 (742)
.+...++.++++
T Consensus 91 ~~a~~~~~~e~~ 102 (152)
T PF07321_consen 91 AEAEEQLEQERQ 102 (152)
T ss_pred HHHHHHHHHHHH
Confidence 888888888876
No 367
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.27 E-value=6.4e+02 Score=32.34 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=27.4
Q ss_pred HHHHHhhhhhHHHHHHHHHH---hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 582 LAIQRLEITKNDLRHRIAKE---ARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (742)
..|+.||.--.+||..|-.. -..=..-+..++++-+.+...+.+++.....+...+.+.++
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666644210 01111123333444444444455555544444444444433
No 368
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.19 E-value=5.3e+02 Score=29.51 Aligned_cols=51 Identities=35% Similarity=0.484 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (742)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (742)
|-.++.-||+||++|+-.+.-||--|. -.+++-...++-++.|+-+..-+|
T Consensus 439 l~~ei~~L~eqle~e~~~~~~le~ql~-----------------~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 439 LVKEIQSLQEQLEKERQSEQELEWQLD-----------------DDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccHHHHH
Confidence 667788899999999999999987553 334444555555555555555555
No 369
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.98 E-value=4.2e+02 Score=23.39 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CC-CC-CCCCChh----HHHHHHHHHHHHHHHHHHHHH
Q 004616 617 QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG--QF-SS-SRGMDSK----TRAELEEIALAEADVARLKQK 688 (742)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~--~~-~~-~~~~p~~----~~~ll~eia~~E~~v~~le~~ 688 (742)
..++.....+.+....|..++++=......|+.+ .+. .+ .+ +.++... ...|=+.++.++.+|..|+.+
T Consensus 8 ~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l---~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~ 84 (106)
T PF01920_consen 8 QELNQQLQQLEQQIQQLERQLRELELTLEELEKL---DDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQ 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---STT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777776433344444432 222 11 12 2333333 334445567788888888888
Q ss_pred HHHHHHHHHHHHhhh
Q 004616 689 VAELHHQLNQQRQHH 703 (742)
Q Consensus 689 ~~~l~~~l~~~~~~~ 703 (742)
...+..++...+...
T Consensus 85 ~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 85 LKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877777665543
No 370
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.93 E-value=9.9e+02 Score=27.32 Aligned_cols=70 Identities=20% Similarity=0.148 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 622 ~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
-+..+.+|+.-+-+.||+|+--..-||.-++ .-++--..||.-|=.+++..|++|.-+.+.-.+.-+
T Consensus 238 Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlN-------------d~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~ 304 (395)
T PF10267_consen 238 LKEQYQREYQFILEALQEERYRYERLEEQLN-------------DLTELHQNEIYNLKQELASMEEKMAYQSYERARDIW 304 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Confidence 3444667777777788888877777776654 234455667777777777777777666665555555
Q ss_pred hhc
Q 004616 702 HHY 704 (742)
Q Consensus 702 ~~~ 704 (742)
+.-
T Consensus 305 E~~ 307 (395)
T PF10267_consen 305 EVM 307 (395)
T ss_pred HHH
Confidence 443
No 371
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=26.79 E-value=8.7e+02 Score=31.69 Aligned_cols=40 Identities=30% Similarity=0.419 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcccccccccccccccCCCCccccCccccccCCCCCCCcccccchHHHhhhCCCCcH
Q 004616 115 EWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPS 182 (742)
Q Consensus 115 eWi~AL~~ai~~aP~~a~~~g~~~~f~~~~~~~~e~s~~~~k~k~~~~~~vFG~pL~~ll~~~~~VP~ 182 (742)
+||..|.-|++..-....||.. +-|..|..++...+.||-
T Consensus 135 ~Wiv~LhyAFQD~~~LYlVMdY----------------------------~pGGDlltLlSk~~~~pE 174 (1317)
T KOG0612|consen 135 EWIVQLHYAFQDERYLYLVMDY----------------------------MPGGDLLTLLSKFDRLPE 174 (1317)
T ss_pred HHHHHHHHHhcCccceEEEEec----------------------------ccCchHHHHHhhcCCChH
Confidence 5999999888754444444443 556677777766555663
No 372
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=4.8e+02 Score=24.97 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--cC-CCCCCCCC------------CCCChhHHHHHHHHHHHHHH
Q 004616 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEV-GL--SM-SSGQFSSS------------RGMDSKTRAELEEIALAEAD 681 (742)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~-~l--~~-~~~~~~~~------------~~~p~~~~~ll~eia~~E~~ 681 (742)
.++.|..+|++||+..+.+++. |..|..- -| .- ..-++-+. ..|-.....+..+|+.||.+
T Consensus 27 rl~~R~~~lk~dik~~k~~~en---ledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~ 103 (131)
T KOG1760|consen 27 RLNSRKDDLKADIKEAKTEIEN---LEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESE 103 (131)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH---HHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999874 3333322 22 11 11122111 11223334566678888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004616 682 VARLKQKVAELHHQLNQQ 699 (742)
Q Consensus 682 v~~le~~~~~l~~~l~~~ 699 (742)
+-..+..+.+|+..||+-
T Consensus 104 ~e~I~~~m~~LK~~LYaK 121 (131)
T KOG1760|consen 104 LESISARMDELKKVLYAK 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888888864
No 373
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=26.68 E-value=1.2e+02 Score=31.38 Aligned_cols=59 Identities=31% Similarity=0.443 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 004616 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---------ALHERRLALEQDVSRLQEQLQ 638 (742)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~r~~Le~~V~~L~~~L~ 638 (742)
|.|-.+--||..|+.|++.|.+ +..-+.|+-+||+-+. ..+|-=-.+.+||..|+.||.
T Consensus 124 e~EklkndlEk~ks~lr~ei~~-~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev~~lk~qi~ 191 (220)
T KOG3156|consen 124 ENEKLKNDLEKLKSSLRHEISK-TTAEFRLDLNLEKGRIKDESSSHDLQIKEISTKIDQEVTNLKTQIE 191 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cchhceeecchhhccccchhhhcchhHhHHHHHHHHHHHHHHHHHH
No 374
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=26.37 E-value=5.4e+02 Score=24.00 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 630 VSRLQEQLQAERDLRAALEVGLSM-SSGQFSSS--RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 630 V~~L~~~L~~e~~~~~~Le~~l~~-~~~~~~~~--~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
+...+.+|+.-...+.-+...+.. ....++++ .....-...|-..|...+..|..++..|...+..|-+.+.
T Consensus 29 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~ 103 (141)
T TIGR02473 29 FERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARR 103 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444444433321 11113322 2233445566677777777777777777777776665544
No 375
>PRK11239 hypothetical protein; Provisional
Probab=26.29 E-value=89 Score=32.45 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 673 EEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
..++.||++|..||++|.+|+.+|.+-+.
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999887665
No 376
>PRK13694 hypothetical protein; Provisional
Probab=26.20 E-value=1.1e+02 Score=26.97 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=26.7
Q ss_pred HHHHhhhhhHHHHHHH---HHHhhhhh----hhhHhHHHHHHHH
Q 004616 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQAL 619 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~ 619 (742)
-|+|||.-|.++...| --|||+|- ++-.-+.-||+.-
T Consensus 20 RIERLEeEkk~i~~dikdVyaEAK~~GfD~K~~r~ii~lRK~d~ 63 (83)
T PRK13694 20 RIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRLRKKDD 63 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCH
Confidence 4899999999999888 45888873 4555555555544
No 377
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=26.07 E-value=3.4e+02 Score=22.69 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhhhhhhhhHhHH-----H-H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 591 KNDLRHRIAKEARGNAILQASLE-----R-R-KQALHERRLALEQDVSRLQEQLQAER 641 (742)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~-----~-~-~~~~~~~r~~Le~~V~~L~~~L~~e~ 641 (742)
..+|+.+|.+|.|-=.-..+.+. + . +........+-++.+..|+.+|++-.
T Consensus 3 i~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999988775444444433 1 2 33445556667777888888877644
No 378
>PRK11020 hypothetical protein; Provisional
Probab=26.04 E-value=2.5e+02 Score=26.34 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004616 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (742)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (742)
.|.+|+.+|-.+|.. +|.=|..|..+. =+..+.++..||+.|+.+|.+|..+-. +.|+.|++
T Consensus 2 ~~K~Eiq~L~drLD~---~~~Klaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~~~~---~~lske~~ 63 (118)
T PRK11020 2 VEKNEIKRLSDRLDA---IRHKLAAASLRG---------DAEKYAQFEKEKATLEAEIARLKEVQS---QKLSKEAQ 63 (118)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 367888899998875 455555555422 234556666677777777666655432 34555554
No 379
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.01 E-value=1e+02 Score=25.60 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 668 TRAELEEIALAEADVARLKQKVAELH 693 (742)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~ 693 (742)
+-||=+=||+||+||.|+|..+..=+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455559999999999999876543
No 380
>PF14282 FlxA: FlxA-like protein
Probab=25.92 E-value=4.9e+02 Score=23.87 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=31.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (742)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (742)
.-.|++|+.-...|+.+|. +++.+.-+=+ +.+ .+++..|+..+..|+.||.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~-~l~~~~~~~~--e~k----~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ-ELSQDSDLDA--EQK----QQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcccCCCH--HHH----HHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999996 5555433311 111 2344445555555554443
No 381
>PF13166 AAA_13: AAA domain
Probab=25.80 E-value=1.2e+03 Score=28.36 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (742)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l 692 (742)
..+++..+..|...|. .++.+|+.-...+...+.+.. +......+...|..++..|....+++..+
T Consensus 324 ~~~~~~~~~~l~~~l~---~l~~~L~~K~~~~~~~~~~~~-~~~~~~~l~~~i~~~n~~i~~~n~~~~~~ 389 (712)
T PF13166_consen 324 KEELKSAIEALKEELE---ELKKALEKKIKNPSSPIELEE-INEDIDELNSIIDELNELIEEHNEKIDNL 389 (712)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHhcccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555553 256666665554444443322 23333444444445554444444444433
No 382
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.64 E-value=9.4e+02 Score=29.94 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004616 620 HERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~ 639 (742)
..+...|+++.+-|+.+||+
T Consensus 436 nak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666653
No 383
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.35 E-value=5.1e+02 Score=26.01 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (742)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (742)
+.+-+||+-++.++...|..+..|+.|..
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 384
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=25.03 E-value=1.2e+02 Score=27.06 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=40.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 004616 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL--------------HERRLALEQDVSRLQEQL 637 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~r~~Le~~V~~L~~~L 637 (742)
....||..-..||.++.+|..-+++|...+.+....+ =.-=..||-||.+|.+++
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v 77 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKV 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888889999999999999999999987765533 122334666666666655
No 385
>smart00338 BRLZ basic region leucin zipper.
Probab=24.93 E-value=2.4e+02 Score=23.19 Aligned_cols=7 Identities=14% Similarity=0.567 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 004616 628 QDVSRLQ 634 (742)
Q Consensus 628 ~~V~~L~ 634 (742)
+.+..|+
T Consensus 26 ~~~~~Le 32 (65)
T smart00338 26 AEIEELE 32 (65)
T ss_pred HHHHHHH
Confidence 3333333
No 386
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=24.90 E-value=1.3e+02 Score=34.39 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC---CCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004616 629 DVSRLQEQLQAERDLRAALEVGLSMSSG---QFSSS--RGMDSKTRAELEEIALAEADVARLKQKV 689 (742)
Q Consensus 629 ~V~~L~~~L~~e~~~~~~Le~~l~~~~~---~~~~~--~~~p~~~~~ll~eia~~E~~v~~le~~~ 689 (742)
|..-|-.+|-.|..|..+||.||-+..- ....| ...+.-..++=..|+.|.-||.+|+-++
T Consensus 308 dq~~l~~RLA~EiA~a~~~ekALl~RR~L~tG~~ePnva~~~~A~~~~~~~i~~LDrEI~~Lk~E~ 373 (418)
T TIGR03755 308 DQSLLVQRLASEIALADTLEKALLMRRMLLTGLQEPNVAANKPAQQEVDKAIDKLDREINNLKTEL 373 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999854322 23344 3345555555556666666666665554
No 387
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.87 E-value=78 Score=31.67 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhhhhhHhHH
Q 004616 592 NDLRHRIAKEARGNAILQASLE 613 (742)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~ 613 (742)
.|+..|.....-.||.|..-|.
T Consensus 3 eD~EsklN~AIERnalLE~ELd 24 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELD 24 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3677888888889999998884
No 388
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.82 E-value=8.6e+02 Score=31.27 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 610 ASLERRKQALHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (742)
...++.=++...+.-.|+..|..+++|+.+
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~ 390 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEKQTNN 390 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455566666777777777777733
No 389
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.78 E-value=5.4e+02 Score=31.18 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=33.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAER 641 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~ 641 (742)
..++.|..-+..|..++...++.|..|-.-...+ .++=.+||+.|.+++.++..-.
T Consensus 87 ~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~Eq----EerL~ELE~~le~~~e~~~D~~ 142 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQ----EERLAELEEELERLQEQQEDRQ 142 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777788888888888888773332222 3333345555555555554433
No 390
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.74 E-value=6.9e+02 Score=26.85 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=21.2
Q ss_pred hhhhhhhHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 004616 603 RGNAILQASLERRKQALH----------ERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~----------~~r~~Le~~V~~L~~~L~~ 639 (742)
|.|+.++-+..+||+... .-..+|.++|++|+++|.+
T Consensus 201 rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 201 RNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777766666665443 2344455666666665553
No 391
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=24.25 E-value=8.9e+02 Score=30.23 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=38.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHH--HH---HHHHHHHHHHHHHHH
Q 004616 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE--RR---LALEQDVSRLQEQLQ 638 (742)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~r---~~Le~~V~~L~~~L~ 638 (742)
+-|--||-|-+-|..|+.+.-.++-.|.-.|-.-.++..-..+ || ..||.|...++.||.
T Consensus 45 ~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQir 109 (1265)
T KOG0976|consen 45 DAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIR 109 (1265)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3566788999999999999999999998888664333322222 22 225555555555543
No 392
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=24.14 E-value=5.3e+02 Score=23.18 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=47.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (742)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~ 649 (742)
.+|.++|.+..+++..+.+-++.=++++..+-|--. +....+-+|..|+..|..++.+-..+-.-|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 367889999999999988888887777765532211 22333556888888888888777666665554
No 393
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=24.13 E-value=4.3e+02 Score=27.72 Aligned_cols=102 Identities=16% Similarity=0.284 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004616 613 ERRKQALHERRLALEQ---DVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKV 689 (742)
Q Consensus 613 ~~~~~~~~~~r~~Le~---~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~ 689 (742)
++-+...+.+|.+|++ |..+||++-+.- .+...+++-.+.+++|-..+.++...+.
T Consensus 115 K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~-------------------~~~k~~~~l~~~~e~v~~k~~ele~~~~-- 173 (223)
T cd07605 115 KDYKKEYKQKREDLDKARSELKKLQKKSQKS-------------------GTGKYQEKLDQALEELNDKQKELEAFVS-- 173 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------------------CCCcccHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3334444555666666 666666655430 2456778888888888888888655553
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccc-ccccccchhh-hcchhh
Q 004616 690 AELHHQLNQQRQHHYGSLSDACDRYQNVQN-HNSQHNICIS-FYMWLA 735 (742)
Q Consensus 690 ~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~ 735 (742)
..|+.-|..||..-+.-..-.|.=-..-.+ |..-..++|+ ++.|-.
T Consensus 174 ~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~~ 221 (223)
T cd07605 174 QGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQE 221 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 568888888888333333333322222222 3333455555 555543
No 394
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=24.13 E-value=8e+02 Score=30.19 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004616 672 LEEIALAEADVARLKQKVAE 691 (742)
Q Consensus 672 l~eia~~E~~v~~le~~~~~ 691 (742)
|+.+..|+.++.-+++++..
T Consensus 215 le~kn~L~~e~~s~kk~l~~ 234 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEE 234 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443
No 395
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.10 E-value=5.6e+02 Score=23.48 Aligned_cols=73 Identities=26% Similarity=0.309 Sum_probs=46.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCh--hHHHHHHHHHHHHHHHHH
Q 004616 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDS--KTRAELEEIALAEADVAR 684 (742)
Q Consensus 607 ~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~--~~~~ll~eia~~E~~v~~ 684 (742)
+++.-+.+ +.+.++.-.+|++.+.+...+|+. ||.-+.+ ||. ...+|=-+|+-++.++..
T Consensus 22 ~~~~~l~~-~~a~~~~~~~l~~~~~~~~~Rl~~-------lE~~l~~----------LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 22 IFWLWLRR-TYAKREDIEKLEERLDEHDRRLQA-------LETKLEH----------LPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHH-------HHHHHHh----------CCCHHHHHHHHHHHHHHHhHHHH
Confidence 45555544 345677777788777777777653 5555532 343 345666777777888888
Q ss_pred HHHHHHHHHHHHH
Q 004616 685 LKQKVAELHHQLN 697 (742)
Q Consensus 685 le~~~~~l~~~l~ 697 (742)
|+.++..+..++.
T Consensus 84 l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 84 LSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777766543
No 396
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.04 E-value=7.8e+02 Score=25.12 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (742)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (742)
.+.-.||+-++.++..+++.+.+...+-
T Consensus 155 e~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 155 EAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444888888888888888888876653
No 397
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=23.62 E-value=6e+02 Score=27.46 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=10.6
Q ss_pred cchhhhHHHHhhhCCCCCCC
Q 004616 232 HVIGDCVKHVLRELPSSPVP 251 (742)
Q Consensus 232 h~vA~lLK~fLReLPePLlp 251 (742)
..++++++.|+..+-.+=+|
T Consensus 8 ~~L~~L~~~Yv~aIn~G~vP 27 (297)
T PF02841_consen 8 PMLAELVKSYVDAINSGSVP 27 (297)
T ss_dssp HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 34566666666665555554
No 398
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=23.52 E-value=1.7e+02 Score=36.63 Aligned_cols=94 Identities=22% Similarity=0.301 Sum_probs=49.9
Q ss_pred CccccccCCCCCCCCCCCCcccccccCcc-------cCCCCcccCCCCch--HHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 004616 537 ESSAEKPVGKGTSSNFSAKRSAFWGRSNA-------RKTSSVESIDSSGE--EELAIQRLEITKNDLRHRIAKEARGNAI 607 (742)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (742)
..|.--+.-.+....-|+-| -+||-++- ||+-+ .|.+++ +|.. ..-+.-|..|....-+|.-
T Consensus 510 R~~VNGs~v~~~t~L~~GdR-iLwGnnHFFrvN~PK~~~~d---~dass~~s~~~~-----f~Y~~A~~Ev~~~~l~ndp 580 (1714)
T KOG0241|consen 510 RSCVNGSLVCSTTQLWHGDR-ILWGNNHFFRVNLPKRKRRD---LDASSEASSEPD-----FNYEFAQMEVIMKTLNNDP 580 (1714)
T ss_pred eeeecCceeccccccccCce-EEecccceEEecCccccccc---cccccccCcccc-----cChHHHHHHHHHhccCCcH
Confidence 34444444445545667777 89997753 23331 222221 1111 1123334444444556888
Q ss_pred hhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 608 LQASLERR-KQALHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 608 ~~~~~~~~-~~~~~~~r~~Le~~V~~L~~~L~~ 639 (742)
+|..+++- ++-..++|.|||+.-..-.++||+
T Consensus 581 vq~~~~~le~qheEeKr~ALE~Qr~~yE~~~eq 613 (1714)
T KOG0241|consen 581 VQNVVQSLEKQHEEEKRSALEEQRLMYERELEQ 613 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766443 344567778888776666666654
No 399
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.20 E-value=7.5e+02 Score=24.57 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004616 620 HERRLALEQDVSRLQEQLQAER 641 (742)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~ 641 (742)
.++-.+++.+...+++.++...
T Consensus 101 ~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 101 QERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 3333334444444444433333
No 400
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=22.96 E-value=1.9e+02 Score=35.00 Aligned_cols=41 Identities=27% Similarity=0.499 Sum_probs=25.0
Q ss_pred HHHhhhhhhhhHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 599 AKEARGNAILQASLERR-----KQALHERRLALEQDVSRLQEQLQA 639 (742)
Q Consensus 599 ~~~~~~~~~~~~~~~~~-----~~~~~~~r~~Le~~V~~L~~~L~~ 639 (742)
-+-+|||-.+-...... +...-.+|.+|+++|++|+..+++
T Consensus 52 V~~iRgNl~~~~~~~~~~~~~~~e~~~~~r~~L~~everLraei~~ 97 (632)
T PF14817_consen 52 VRKIRGNLLWYGHQQSKERKKSRENEARRRRELEKEVERLRAEIQE 97 (632)
T ss_pred HHHHHcceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567886654433322 223344788888898888876653
No 401
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.81 E-value=1.1e+02 Score=32.61 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004616 617 QALHERRLALEQDVSRLQE 635 (742)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~ 635 (742)
+.+.+||.+|+.+|++|.+
T Consensus 7 ~eL~qrk~~Lq~eIe~Ler 25 (283)
T PF11285_consen 7 KELEQRKQALQIEIEQLER 25 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888854
No 402
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=22.74 E-value=2.6e+02 Score=25.34 Aligned_cols=29 Identities=45% Similarity=0.640 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHhhc
Q 004616 624 LALEQDVSRLQEQLQ------AERDLRAALEVGLS 652 (742)
Q Consensus 624 ~~Le~~V~~L~~~L~------~e~~~~~~Le~~l~ 652 (742)
..+..++++||+||+ .|+=-|.||..+|.
T Consensus 6 s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLg 40 (98)
T PRK13848 6 SKIREEIAKLQEQLKQAETREAERIGRIALKAGLG 40 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 346667778888875 47777888888774
No 403
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=22.70 E-value=1.8e+02 Score=33.29 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004616 628 QDVSRLQEQLQAERDLRAALEV 649 (742)
Q Consensus 628 ~~V~~L~~~L~~e~~~~~~Le~ 649 (742)
.|+++|.+.|++|+.||.-||-
T Consensus 594 kel~kl~~dleeek~mr~~lem 615 (627)
T KOG4348|consen 594 KELEKLRKDLEEEKTMRSNLEM 615 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhhHh
Confidence 4667777788888888776553
No 404
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=22.50 E-value=6.1e+02 Score=23.27 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhHh-------HH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004616 583 AIQRLEITKNDLRHRIAKEARGNAILQAS-------LE-RRKQALHER-RLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (742)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~-r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~ 652 (742)
+|.++-..-.+++.+|...-+.|-.+... +. -.++.-..+ ...+.+.+.+++..|+.++..-.++...+.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777776555544333221 11 111111222 357889999999999999999999998775
No 405
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.24 E-value=3.3e+02 Score=29.44 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 004616 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE-------IALAEADVARLKQKVAELHHQL 696 (742)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~e-------ia~~E~~v~~le~~~~~l~~~l 696 (742)
++|-+-=+.|-..|.+|..+|.+...|+.++.-.-.+-..|=.-++++..+ |.-++.+..+|+.|+.--+..|
T Consensus 127 seit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 127 SEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred HHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666778888888888888888888875532112222333333444444 4455566666666666666666
Q ss_pred HHHHhhhcCCcccccccccccccccccccchhh-hcc
Q 004616 697 NQQRQHHYGSLSDACDRYQNVQNHNSQHNICIS-FYM 732 (742)
Q Consensus 697 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~ 732 (742)
-+.+. +..++. +-+|.+...|+.-...+|. |+.
T Consensus 207 ER~qK-RL~sLq--~vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 207 ERNQK-RLQSLQ--SVRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHH-HHHHHH--hcChHHHHHHHHHHHHHHHHHHH
Confidence 55444 333332 2345555556555555665 554
No 406
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=22.03 E-value=1.1e+03 Score=26.00 Aligned_cols=79 Identities=15% Similarity=0.266 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHhhcCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 622 RRLALEQDVSRLQEQLQA-----E--RDLRAALEVGLSMSSG-QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (742)
Q Consensus 622 ~r~~Le~~V~~L~~~L~~-----e--~~~~~~Le~~l~~~~~-~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (742)
-|..||-||+-.+-+|.. + ..-++=||.||.+... -+.+-..+...+-.|-....+|=...++-|.++..|.
T Consensus 85 ~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe 164 (305)
T PF14915_consen 85 NKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLE 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 355566666665555531 1 2223445555544322 1222233333333344444445555555555555555
Q ss_pred HHHHHHH
Q 004616 694 HQLNQQR 700 (742)
Q Consensus 694 ~~l~~~~ 700 (742)
..|.+-|
T Consensus 165 ~elh~tr 171 (305)
T PF14915_consen 165 IELHHTR 171 (305)
T ss_pred HHHHHHH
Confidence 5555444
No 407
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=21.74 E-value=3.9e+02 Score=27.45 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (742)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l 692 (742)
||+|-.+|+++|..|+.-+..+|.-+. .-++.|++|..++++=|.-|
T Consensus 139 LEkEReRLkq~lE~Ek~~~~~~EkE~~--------------------K~~~~l~eE~~k~K~~~l~L 185 (192)
T PF09727_consen 139 LEKERERLKQQLEQEKAQQKKLEKEHK--------------------KLVSQLEEERTKLKSFVLML 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887544 34667888888887766544
No 408
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=21.59 E-value=3.5e+02 Score=32.26 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccccccccccccccchhhhcchhhcccccCC
Q 004616 674 EIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNHNSQHNICISFYMWLAWGSYFGV 742 (742)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (742)
++..+|..|.+|++|+.-|..|+.. -..+.|-+- --.|.|++-+ -.|+|||--|+|
T Consensus 677 ~~Ek~~k~~~~l~eqi~kl~~q~~d-----------keenK~vAL-GTSKiNYiDP-RitvawcKk~dV 732 (759)
T KOG0981|consen 677 EVEKKEKKLERLEEQLKKLEIQMTD-----------KEENKQVAL-GTSKLNYIDP-RITVAWCKKHDV 732 (759)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhccc-----------hhhcceeec-ccccccccCC-ceeeeehhccCC
Confidence 6667777777777777777666533 222222221 1245555544 248899988876
No 409
>PTZ00464 SNF-7-like protein; Provisional
Probab=21.58 E-value=9.2e+02 Score=25.05 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=17.0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHH
Q 004616 579 EEELAIQRLEITKNDLRHRIAK 600 (742)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~ 600 (742)
....+|.+|+..-..|+.||.+
T Consensus 15 t~~d~~~~l~~r~~~l~kKi~~ 36 (211)
T PTZ00464 15 TLEDASKRIGGRSEVVDARINK 36 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778999888888888844
No 410
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=21.32 E-value=3.9e+02 Score=31.19 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (742)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (742)
+++|-.+||.+++.++++|..-.. .....++..+++.++..+..|++++.-|+.-|.+
T Consensus 168 ~~~Rl~~L~~qi~~~~~~l~~~~~----------------------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~ 225 (475)
T PF10359_consen 168 IQERLDELEEQIEKHEEKLGELEL----------------------NPDDPELKSDIEELERHISSLKERIEFLENMLED 225 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc----------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666778887777777654322 2233555566666666666666666666665555
Q ss_pred HHhhhcC
Q 004616 699 QRQHHYG 705 (742)
Q Consensus 699 ~~~~~~~ 705 (742)
-......
T Consensus 226 l~~~~~~ 232 (475)
T PF10359_consen 226 LEDSESS 232 (475)
T ss_pred Hhhhccc
Confidence 4443333
No 411
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=21.29 E-value=9.3e+02 Score=30.33 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=30.3
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 004616 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDV 630 (742)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V 630 (742)
-|-||..| +++..|....|.+|.+.--|+.|+. .|.|-.+|+++.
T Consensus 184 Nq~l~klk-q~~~ei~e~eke~a~yh~lLe~r~~-~~~rl~~l~~el 228 (984)
T COG4717 184 NQLLEKLK-QERNEIDEAEKEYATYHKLLESRRA-EHARLAELRSEL 228 (984)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence 35556666 9999999999999999888875543 333333344333
No 412
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.13 E-value=6.7e+02 Score=27.61 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004616 670 AELEEIALAEADVARLK 686 (742)
Q Consensus 670 ~ll~eia~~E~~v~~le 686 (742)
++..||+.+|++...|+
T Consensus 75 ~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 75 ELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 413
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.11 E-value=1.7e+03 Score=27.83 Aligned_cols=18 Identities=17% Similarity=0.016 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 004616 108 ETSEDLYEWKTALELALA 125 (742)
Q Consensus 108 dSeeE~~eWi~AL~~ai~ 125 (742)
.+..+..+|+..+..+..
T Consensus 38 ~~~~~i~~~l~~~~e~~~ 55 (771)
T TIGR01069 38 KSVEESKEIIIKLTALGS 55 (771)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 467788888888777764
No 414
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=21.09 E-value=9.7e+02 Score=25.10 Aligned_cols=76 Identities=24% Similarity=0.353 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 004616 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEI-ALAEADVARLKQKVAE 691 (742)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~ei-a~~E~~v~~le~~~~~ 691 (742)
..|..........|..+|..|+..++.|+.-|..-|.-+-. +..++..-| ..++.|...-|+.+.+
T Consensus 113 ~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~k-------------rl~e~~~~l~~~i~~Ek~~Re~~~~~ 179 (247)
T PF06705_consen 113 EERPQDIEELNQELVRELNELQEAFENERNEREEREENILK-------------RLEEEENRLQEKIEKEKNTRESKLSE 179 (247)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556678888888888888888887766654321 111222111 2455666666666666
Q ss_pred HHHHHHHHHh
Q 004616 692 LHHQLNQQRQ 701 (742)
Q Consensus 692 l~~~l~~~~~ 701 (742)
|+..|.+-+.
T Consensus 180 l~~~le~~~~ 189 (247)
T PF06705_consen 180 LRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 415
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=21.08 E-value=2.1e+02 Score=30.35 Aligned_cols=82 Identities=21% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 616 KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (742)
Q Consensus 616 ~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (742)
+..++-+-..|--.|-.||-||+..-..|+-|..+++ -+.-+-..|-.|.-||...---+.-.|+=|+.|| .--.+
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~d---Ea~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~-AslV~ 86 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRD---EATRLQDELQGKLEELQKKQHEANLAVTPLKAKL-ASLVQ 86 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHH-HHHHH
Q ss_pred HHHHHh
Q 004616 696 LNQQRQ 701 (742)
Q Consensus 696 l~~~~~ 701 (742)
-+++||
T Consensus 87 kc~eRn 92 (277)
T PF15030_consen 87 KCRERN 92 (277)
T ss_pred HHHHHH
No 416
>PRK11281 hypothetical protein; Provisional
Probab=21.06 E-value=1.1e+03 Score=30.86 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=18.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 004616 664 MDSKTRAELEEIALAEADVARLKQKV 689 (742)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~le~~~ 689 (742)
-|.....|-+|.+++++++..+++..
T Consensus 190 ~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 190 RPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677888888887777666554
No 417
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.05 E-value=7.5e+02 Score=24.78 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=24.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 663 GMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (742)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (742)
....+.++|-.||+..|.++..|++|...|..
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777888888888888888887764
No 418
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=21.00 E-value=4.9e+02 Score=23.97 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=21.9
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhHhHH
Q 004616 584 IQRLEITKNDLRHRIAKEARGNAILQASLE 613 (742)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (742)
|.+|.+....+..-|......|..|+..+.
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~ 56 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQ 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666667777777778888887765
No 419
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.93 E-value=2.8e+02 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004616 615 RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (742)
Q Consensus 615 ~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l 651 (742)
+...++.+-..||.++.+|+++|.+...+...|+..|
T Consensus 19 e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~F 55 (236)
T PF12017_consen 19 ENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIF 55 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444577777777777766666655555443
No 420
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=20.64 E-value=5.5e+02 Score=28.06 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhH
Q 004616 589 ITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKT 668 (742)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~Le~~l~~~~~~~~~~~~~p~~~ 668 (742)
+.+.-|..-+..-.++=+.|++.+..|-..+.+.-..++.-.....++.+ ..|+.-|+..++ ..+++
T Consensus 136 al~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~--~rL~~rl~el~~---------~~id~-- 202 (291)
T TIGR00255 136 ALEEALLDFINMREFEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQR--ERLKARIEDLAQ---------EFLDL-- 202 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH--HHHHHHHHHHhc---------CCCCH--
Confidence 34445555555666777788888887777666665554443333222221 123333444331 01333
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 004616 669 RAELEEIAL------AEADVARLKQKVAELHHQLNQ 698 (742)
Q Consensus 669 ~~ll~eia~------~E~~v~~le~~~~~l~~~l~~ 698 (742)
..++.|+|+ +-+|+.||..|+..++.-|..
T Consensus 203 ~Rl~qEval~adK~DI~EEl~RL~sHl~~f~~~L~~ 238 (291)
T TIGR00255 203 NRLEQEAALLAQRIDIAEEIDRLDSHVKEFYNILKK 238 (291)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence 456667666 578999999999999887754
No 421
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=20.61 E-value=1.4e+03 Score=26.80 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 004616 594 LRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRL 633 (742)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Le~~V~~L 633 (742)
++.++....-.++.+++.++..+.+..+++..|++-=.+|
T Consensus 72 ~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L 111 (475)
T PRK10361 72 LQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRL 111 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444555555555555555444444433333
No 422
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.55 E-value=3.6e+02 Score=28.54 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 004616 672 LEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (742)
Q Consensus 672 l~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~ 707 (742)
+++|-.+|.++.+.+.++..++.++..-.+.-.-|+
T Consensus 161 ~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~st 196 (262)
T PF14257_consen 161 VEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYST 196 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEE
Confidence 566777888888888888888888877666554444
No 423
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=20.44 E-value=6.3e+02 Score=24.35 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004616 674 EIALAEADVARLKQKVAEL 692 (742)
Q Consensus 674 eia~~E~~v~~le~~~~~l 692 (742)
||..|++.|..|+.+|..|
T Consensus 110 dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 110 DVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544
No 424
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.26 E-value=1.3e+03 Score=27.95 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=16.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhHh
Q 004616 580 EELAIQRLEITKNDLRHRIAKEARGNAILQAS 611 (742)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (742)
.+..++-|...-.+|..+|.+=...-..++++
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~ 357 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSS 357 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666665433333444443
No 425
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.06 E-value=1.2e+02 Score=35.29 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 670 AELEEIALAEADVARLKQKVAELHHQLNQ 698 (742)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (742)
+++.+|+.|+.+|..||+|+.+|..++..
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccch
Confidence 45667777777777777777766666543
No 426
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.01 E-value=5e+02 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=22.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004616 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (742)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (742)
.....+.+......+..++..|+.++..|+.+|.+-
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555666667777777777777776666655
Done!