Query 004616
Match_columns 742
No_of_seqs 404 out of 2418
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 18:05:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004616.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1915-1918//hhsearch_pdb/004616hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 1.0 1 1 314.7 14.4 202 155-375 9-214 (214)
2 3msx_B RHO GTPase-activating p 1.0 1 1 313.1 15.3 196 159-372 6-201 (201)
3 3iug_A RHO/CDC42/RAC GTPase-ac 1.0 1 1 312.4 15.8 210 154-377 10-224 (229)
4 3fk2_A Glucocorticoid receptor 1.0 1 1 312.1 14.9 196 160-374 48-245 (246)
5 2ee4_A RHO GTPase activating p 1.0 1 1 311.1 15.5 199 160-377 7-207 (209)
6 1f7c_A Rhogap protein; GTPase 1.0 1 1 310.0 15.3 210 109-376 1-220 (231)
7 1ow3_A RHO-GTPase-activating p 1.0 1 1 306.5 15.3 199 157-376 36-238 (242)
8 1tx4_A P50-rhogap; complex (GT 1.0 1 1 303.6 15.3 193 159-372 2-198 (198)
9 3cxl_A N-chimerin; SH2, RHO-GA 1.0 1 1 300.4 15.3 193 162-372 266-463 (463)
10 2osa_A N-chimaerin; RHO-GAP, G 1.0 1 1 300.2 17.0 192 163-372 6-202 (202)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=1.00 E-value=1 Score=314.68 Aligned_cols=202 Identities=26% Similarity=0.385 Sum_probs=176.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC---CCC
Q ss_conf 6678988885135566887520-799858999999999950997679110499999999999996308767899---888
Q 004616 155 WRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSA---DED 230 (742)
Q Consensus 155 ~k~~~~~k~~vFGvpL~~ll~~-~~~VP~il~~~l~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~---~~D 230 (742)
++.+...+..+||+||..++++ ...||.+|.+|+.+|+++|+.+|||||++|+...+++++..+|.|...... ..|
T Consensus 9 l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~d 88 (214)
T 3byi_A 9 LQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWED 88 (214)
T ss_dssp HHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCS
T ss_pred HHHCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 87638876882388679999776999896999999999982898788232378799999999998257997888455553
Q ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 11114567777610999999956599999997129989999999999862599567999999999886522343456889
Q 004616 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMT 310 (742)
Q Consensus 231 vh~vA~lLK~fLReLPePLlp~~ly~~li~~~~~~~~~~ri~~l~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt 310 (742)
+|+||++||.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||++|+.+|+||+.||++|+.|++.|+|+
T Consensus 89 vh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~ 167 (214)
T 3byi_A 89 IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLV-QKLPPPNRDTMKVLFGHLTKIVAKASKNLMS 167 (214)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 489989999999858988899999999999986699999999999999-9689999999999999999999735677998
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 21014440133358897898765443377899568999999987789999999996345236666
Q 004616 311 PSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (742)
Q Consensus 311 ~~NLAivfaP~Llr~~~~~~~~led~~~~~g~~~~q~~~~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (742)
+.|||+||||+|+|++.... +. +..+..++.+|++||+||+.||+++
T Consensus 168 ~~NLa~vf~P~Ll~~~~~~~------------~~------~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 168 TQSLGIVFGPTLLRAENETG------------NM------AIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp HHHHHHHHHHHHHCCTTSSS------------CH------HHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred HHHHHHHHCCCCCCCCCCCH------------HH------HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 79869986450378887537------------79------9987999999999999799856999
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=313.13 Aligned_cols=196 Identities=24% Similarity=0.394 Sum_probs=175.5
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 98888513556688752079985899999999995099767911049999999999999630876789988811114567
Q 004616 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (742)
Q Consensus 159 ~~~k~~vFGvpL~~ll~~~~~VP~il~~~l~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~Dvh~vA~lL 238 (742)
.+.++.+||+||..++++ +++|.+|.+|+.+|+++|+.+|||||++|+...++++++.+|.|........|+|+||++|
T Consensus 6 ~~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lL 84 (201)
T 3msx_B 6 SPMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVL 84 (201)
T ss_dssp ----CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHH
T ss_pred CCCCCCEECCCHHHHHCC-CCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 999988428769999608-9989799999999998499889806639789999999999616998888855377899999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 77761099999995659999999712998999999999986259956799999999988652234345688921014440
Q 004616 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (742)
Q Consensus 239 K~fLReLPePLlp~~ly~~li~~~~~~~~~~ri~~l~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (742)
|.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||+.|+.+|+||+.||++|+.|++.|||++.|||+||
T Consensus 85 K~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf 163 (201)
T 3msx_B 85 KDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLL-DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 163 (201)
T ss_dssp HHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 9999958987789999999999873356799999999999-989999999999999999999965364789803655553
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 133358897898765443377899568999999987789999999996345236
Q 004616 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (742)
Q Consensus 319 aP~Llr~~~~~~~~led~~~~~g~~~~q~~~~~~~~~~~~~iVe~LIen~~~IF 372 (742)
||+|+|++...... .......+++.+|++||+||+.||
T Consensus 164 ~P~ll~~~~~~~~~----------------~~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 164 APSILWPPASSSPE----------------LENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHCCCCTTSCHH----------------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 16201789777767----------------899999999999999997458429
No 3
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=1.00 E-value=1 Score=312.43 Aligned_cols=210 Identities=20% Similarity=0.273 Sum_probs=179.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC----C
Q ss_conf 56678988885135566887520-799858999999999950997679110499999999999996308767899----8
Q 004616 154 QWRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSA----D 228 (742)
Q Consensus 154 ~~k~~~~~k~~vFGvpL~~ll~~-~~~VP~il~~~l~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~~----~ 228 (742)
.|+++...+.++||+||..++++ ...||.+|.+|+.+|+++|+ +|||||++|+...++++++.|+.|...... .
T Consensus 10 ~~~~~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~ 88 (229)
T 3iug_A 10 GRENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYV 88 (229)
T ss_dssp --------CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTT
T ss_pred CCCCCCCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 66788889989689665999976699889799999999998099-88874368869999999999855898886501033
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 88111145677776109999999565999999971299899999999998625995679999999998865223434568
Q 004616 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308 (742)
Q Consensus 229 ~Dvh~vA~lLK~fLReLPePLlp~~ly~~li~~~~~~~~~~ri~~l~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~Nk 308 (742)
.|||+||++||.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||++|+.+|+||+.||++|+.+++.|+
T Consensus 89 ~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 167 (229)
T 3iug_A 89 QDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVI-QQLPPPHYRTLEFLMRHLSLLADYCSITN 167 (229)
T ss_dssp TCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 42288999999999978997759899999999997488899999999999-97999999999999999999996647357
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 892101444013335889789876544337789956899999998778999999999634523666655
Q 004616 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (742)
Q Consensus 309 Mt~~NLAivfaP~Llr~~~~~~~~led~~~~~g~~~~q~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (742)
|++.|||+||||+|||++....... ...+.......++.+|++||+||+.||+++..
T Consensus 168 M~~~NLAivf~P~Ll~~~~~~~~~~------------~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~~ 224 (229)
T 3iug_A 168 MHAKNLAIVWAPNLLRSKQIESACF------------SGTAAFMEVRIQSVVVEFILNHVDVLFSGRIS 224 (229)
T ss_dssp CCHHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC----
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9827879987134027786331223------------21788887899999999999867880798377
No 4
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=312.08 Aligned_cols=196 Identities=23% Similarity=0.423 Sum_probs=174.9
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCHHHH
Q ss_conf 8888513556688752079985899999999995099767911049999999999999630876789--98881111456
Q 004616 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS--ADEDAHVIGDC 237 (742)
Q Consensus 160 ~~k~~vFGvpL~~ll~~~~~VP~il~~~l~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~--~~~Dvh~vA~l 237 (742)
..++.+||+||..++...+.||.+|.+|+.+|+++|+.+|||||++|+...++.+++.||.|..... .++|||+||++
T Consensus 48 ~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~l 127 (246)
T 3fk2_A 48 TWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGA 127 (246)
T ss_dssp -CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHH
T ss_pred CCCCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 66788538778999628999892999999999982998788367478477999999999659997855466769999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 77776109999999565999999971299899999999998625995679999999998865223434568892101444
Q 004616 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (742)
Q Consensus 238 LK~fLReLPePLlp~~ly~~li~~~~~~~~~~ri~~l~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAiv 317 (742)
||.|||+||+||+|..+|+.|+.+....+.++++..++.++ ..||++|+.+|+||+.||++|+.+++.|+|++.|||+|
T Consensus 128 LK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAiv 206 (246)
T 3fk2_A 128 MKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVL-KKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSIC 206 (246)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999858986688999999998852487799999999999-97899999999999999999986357668965775787
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 013335889789876544337789956899999998778999999999634523666
Q 004616 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (742)
Q Consensus 318 faP~Llr~~~~~~~~led~~~~~g~~~~q~~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (742)
|||+||||..... .+...+..++.+|++||+||+.||.+
T Consensus 207 f~P~Llrp~~~~~------------------~~~~~~~~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 207 FWPTLMRPDFSTM------------------DALTATRTYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHCCCSSSS------------------CHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred HCCCCCCCCCCCH------------------HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4062038897547------------------79998899999999999967986389
No 5
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=1.00 E-value=1 Score=311.12 Aligned_cols=199 Identities=22% Similarity=0.376 Sum_probs=175.2
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCHHHH
Q ss_conf 8888513556688752079985899999999995099767911049999999999999630876789--98881111456
Q 004616 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS--ADEDAHVIGDC 237 (742)
Q Consensus 160 ~~k~~vFGvpL~~ll~~~~~VP~il~~~l~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~~~--~~~Dvh~vA~l 237 (742)
..+..+||+||..++.+...||.+|.+|+.+|+++|+.+|||||++|+...++.+++.|++|..... .+.|+|+||++
T Consensus 7 ~~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~l 86 (209)
T 2ee4_A 7 GWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGA 86 (209)
T ss_dssp SSCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHH
T ss_pred CCCCCEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999608868999736999892999999999981998787310689899999999998558998855678889999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 77776109999999565999999971299899999999998625995679999999998865223434568892101444
Q 004616 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (742)
Q Consensus 238 LK~fLReLPePLlp~~ly~~li~~~~~~~~~~ri~~l~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAiv 317 (742)
||.|||+||+||+|.++|+.|+.+.+..+.++++..++.++ .+||++|+.+|+||+.||++|+.+++.|||++.|||+|
T Consensus 87 LK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaiv 165 (209)
T 2ee4_A 87 LKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSIC 165 (209)
T ss_dssp HHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHT-TTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999849986679999999999982899899999999999-97899999999999999999985644427987887887
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 013335889789876544337789956899999998778999999999634523666655
Q 004616 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (742)
Q Consensus 318 faP~Llr~~~~~~~~led~~~~~g~~~~q~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (742)
|||+|+|++..+...+.+ +...+.+|++||+||+.||++++.
T Consensus 166 f~P~L~~~~~~~~~~l~~------------------~~~~~~vve~LI~~~~~iF~~~~~ 207 (209)
T 2ee4_A 166 FWPTLMRPDFENREFLST------------------TKIHQSVVETFIQQCQFFFYNGEI 207 (209)
T ss_dssp HHHHHSCCCCCSSCCSCC------------------CTTHHHHHHHHHHTHHHHTTCCCC
T ss_pred HCCCCCCCCCCCHHHHHH------------------HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 336111889866889997------------------699999999999856987199987
No 6
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=1.00 E-value=1 Score=310.02 Aligned_cols=210 Identities=23% Similarity=0.330 Sum_probs=180.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC----CCCHHH
Q ss_conf 9989999999999999515540000366654457888543575455667898888513556688752079----985899
Q 004616 109 TSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDID----GGPSFL 184 (742)
Q Consensus 109 S~eEl~eWI~AL~~ai~~aP~~a~~~g~~~~f~~~~~~~~~~~~~~~k~~~~~k~~vFGvpL~~ll~~~~----~VP~il 184 (742)
+++|+..|+.++... .++||+||...+++.. .+|.+|
T Consensus 1 ~e~~~~~W~~~m~~~---------------------------------------~pvfgvpl~~~~~~~~~l~~~~p~iv 41 (231)
T 1f7c_A 1 SEEDRRLWMEAMDGR---------------------------------------EPVYNSNKDNQSEGTAQLDSIGFSII 41 (231)
T ss_dssp ---------------------------------------------------------------------CCSSHHHHHHH
T ss_pred CHHHHHHHHHHCCCC---------------------------------------CCCCCCCCHHCCCCCCCCCCCCCCHH
T ss_conf 967899999970899---------------------------------------98437860002444321577676099
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-HHHCCC---CCCC--CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999509976791104999999999999-963087---6789--98881111456777761099999995659999
Q 004616 185 EKALRFLEKFGTKVEGILRQAADVEEVDRRVQ-EYEQGK---TEFS--ADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (742)
Q Consensus 185 ~~~l~~L~~~Gl~~EGIFR~sg~~~~i~~L~~-~ld~g~---~~~~--~~~Dvh~vA~lLK~fLReLPePLlp~~ly~~l 258 (742)
.+|+.+|+++|+.+|||||++|+...++++++ .+|.|. .++. ..+|+|+||++||.|||+||+||+|.++|+.|
T Consensus 42 ~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~ 121 (231)
T 1f7c_A 42 KKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSF 121 (231)
T ss_dssp HHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999999848997871553784999999999986747776668422333669999999999998789877899999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99971299899999999998625995679999999998865223434568892101444013335889789876544337
Q 004616 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFD 338 (742)
Q Consensus 259 i~~~~~~~~~~ri~~l~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfaP~Llr~~~~~~~~led~~~ 338 (742)
+.+....+.++++..++.++ .+||++|+.+|+||+.||++|+.|++.|||++.|||+||||+|+|++..+...
T Consensus 122 ~~~~~~~~~~~r~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~------ 194 (231)
T 1f7c_A 122 IKAAKLENQESRVSEIHSLV-HRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAA------ 194 (231)
T ss_dssp HHHHTCSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSG------
T ss_pred HHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHH------
T ss_conf 99985289999999999999-97999999999999999999996377778988999999624207888666889------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 78995689999999877899999999963452366665
Q 004616 339 MNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 339 ~~g~~~~q~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
......++.+|++||+||+.||++..
T Consensus 195 ------------~~~~~~~~~vve~LI~~~~~iF~~~~ 220 (231)
T 1f7c_A 195 ------------IMDIKFQNIVIEILIENHEKIFNTVP 220 (231)
T ss_dssp ------------GGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf ------------98779999999999997998679999
No 7
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=1.00 E-value=1 Score=306.50 Aligned_cols=199 Identities=24% Similarity=0.359 Sum_probs=173.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCC
Q ss_conf 7898888513556688752079---9858999999999950997679110499999999999996308767-89988811
Q 004616 157 DKRPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAH 232 (742)
Q Consensus 157 ~~~~~k~~vFGvpL~~ll~~~~---~VP~il~~~l~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~-~~~~~Dvh 232 (742)
.+.+.+..+||+||+.++++.+ .||.+|.+|+.+|+++|+.+|||||++|+...++.+++.||+|... +....|+|
T Consensus 36 ~~~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~ 115 (242)
T 1ow3_A 36 PRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELH 115 (242)
T ss_dssp ---CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTH
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 88999888259759999760599888899999999999981999786256478699999999998468987722156627
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 11456777761099999995659999999712998999999999986259956799999999988652234345688921
Q 004616 233 VIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (742)
Q Consensus 233 ~vA~lLK~fLReLPePLlp~~ly~~li~~~~~~~~~~ri~~l~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~ 312 (742)
++|++||.|||+||+||+|.++|+.|+.+... +.++++..++.++ .+||++|+.+|+||+.||++|+.+++.|+|++.
T Consensus 116 ~va~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 193 (242)
T 1ow3_A 116 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNT 193 (242)
T ss_dssp HHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999998579877789999999999868-9899999999999-978999999999999999999961276789988
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0144401333588978987654433778995689999999877899999999963452366665
Q 004616 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (742)
Q Consensus 313 NLAivfaP~Llr~~~~~~~~led~~~~~g~~~~q~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (742)
|||+||||+|+|++.. . ........++.+|++||+||+.||++..
T Consensus 194 NLAivf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF~~~~ 238 (242)
T 1ow3_A 194 NLAVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELFPSPD 238 (242)
T ss_dssp HHHHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC----
T ss_pred HHHHHHCCHHCCCCCC---------------C----CCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8598520200787985---------------3----1099999999999999997999859999
No 8
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=1.00 E-value=1 Score=303.61 Aligned_cols=193 Identities=25% Similarity=0.364 Sum_probs=170.1
Q ss_pred CCCCCCCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCH
Q ss_conf 98888513556688752079---9858999999999950997679110499999999999996308767-8998881111
Q 004616 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVI 234 (742)
Q Consensus 159 ~~~k~~vFGvpL~~ll~~~~---~VP~il~~~l~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~~~-~~~~~Dvh~v 234 (742)
+|.+..+||+||..++++.+ .||.+|.+|+.+|+++|+.+|||||++|+...++.+++.||.|... +....|+|++
T Consensus 2 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~ 81 (198)
T 1tx4_A 2 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP 81 (198)
T ss_dssp -CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 99998813886899996489989889899999999998099878734217859999999999827999881104662289
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 45677776109999999565999999971299899999999998625995679999999998865223434568892101
Q 004616 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (742)
Q Consensus 235 A~lLK~fLReLPePLlp~~ly~~li~~~~~~~~~~ri~~l~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NL 314 (742)
|++||.|||+||+||+|.++|+.|+.+... +.++++..++.++ .+||+.|+.+|+||+.||++|+.|++.|||++.||
T Consensus 82 a~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 159 (198)
T 1tx4_A 82 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159 (198)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 999999999789867799999999999868-9899999999999-97899999999999999999986268888988987
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4440133358897898765443377899568999999987789999999996345236
Q 004616 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (742)
Q Consensus 315 AivfaP~Llr~~~~~~~~led~~~~~g~~~~q~~~~~~~~~~~~~iVe~LIen~~~IF 372 (742)
|+||||+|+|++.. . ........++.+|++||+||+.||
T Consensus 160 a~vf~P~Ll~~~~~----------------~---~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 160 AVVFGPNLLWAKDA----------------A---ITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHCCCSSH----------------H---HHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHCCCCCCCCCC----------------C---CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 85641441578986----------------2---169999999999999998489749
No 9
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=1.00 E-value=1 Score=300.37 Aligned_cols=193 Identities=18% Similarity=0.316 Sum_probs=170.4
Q ss_pred CCCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCC--CCCCCCCHHH
Q ss_conf 885135566887520-7998589999999999509976791104999999999999963087--6789--9888111145
Q 004616 162 KSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGD 236 (742)
Q Consensus 162 k~~vFGvpL~~ll~~-~~~VP~il~~~l~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g~--~~~~--~~~Dvh~vA~ 236 (742)
...+||+||..++++ ...||.+|.+|+.+|+.+|+.+|||||++|+...+++|+..||.+. .++. ...|+|+||+
T Consensus 266 ~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~ 345 (463)
T 3cxl_A 266 VKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 345 (463)
T ss_dssp CCCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHH
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 33223465310000369978862899899998507887862572598999999999998358767755234788001135
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 67777610999999956599999997129989999999999862599567999999999886522343456889210144
Q 004616 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (742)
Q Consensus 237 lLK~fLReLPePLlp~~ly~~li~~~~~~~~~~ri~~l~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAi 316 (742)
+||.|||+||+||||.++|+.|+.+....+.++++..++.++ ..||++|+.+|++|+.||++|+.+++.|+|++.|||+
T Consensus 346 lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAi 424 (463)
T 3cxl_A 346 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGI 424 (463)
T ss_dssp HHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 799999856787788899999999984599999999999999-8589999999999999999998535655899899799
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 40133358897898765443377899568999999987789999999996345236
Q 004616 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (742)
Q Consensus 317 vfaP~Llr~~~~~~~~led~~~~~g~~~~q~~~~~~~~~~~~~iVe~LIen~~~IF 372 (742)
||||+|+|++..+.. .....+..++.+|++||+|++.||
T Consensus 425 vf~P~Ll~~~~~~~~-----------------~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 425 VFGPTLMRSPELDAM-----------------AALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHHCCCCCSCTT-----------------GGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred HHHCCCCCCCCCCHH-----------------HHHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 860502688986678-----------------899878999999999985546219
No 10
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=300.23 Aligned_cols=192 Identities=18% Similarity=0.333 Sum_probs=170.6
Q ss_pred CCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC-C-CCCC--CCCCCCCHHHH
Q ss_conf 85135566887520-799858999999999950997679110499999999999996308-7-6789--98881111456
Q 004616 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDC 237 (742)
Q Consensus 163 ~~vFGvpL~~ll~~-~~~VP~il~~~l~~L~~~Gl~~EGIFR~sg~~~~i~~L~~~ld~g-~-~~~~--~~~Dvh~vA~l 237 (742)
.++||+||..++++ ...+|.+|.+|+.+|+++|+.+|||||++|+...++.+++.||++ . .++. ...|+|+||++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 88667886999977599989499999999998488867823306849999999999983897567774444567899999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 77776109999999565999999971299899999999998625995679999999998865223434568892101444
Q 004616 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (742)
Q Consensus 238 LK~fLReLPePLlp~~ly~~li~~~~~~~~~~ri~~l~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAiv 317 (742)
||.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||++|+.+|+||+.||++|+.|++.|||++.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 99999968974479999999999983699999999999999-97899999999999999999864165778998999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 0133358897898765443377899568999999987789999999996345236
Q 004616 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (742)
Q Consensus 318 faP~Llr~~~~~~~~led~~~~~g~~~~q~~~~~~~~~~~~~iVe~LIen~~~IF 372 (742)
|||+|+|++..+ + ......+..++.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~~--------------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPELD--------------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HCCCCCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 713427999846--------------8---8999979999999999997151049
Done!