BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004617
(742 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 178/681 (26%), Positives = 275/681 (40%), Gaps = 114/681 (16%)
Query: 71 VKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFK------GTLD----IREFDSFNN 120
V F L LD+ N + V + +G K TLD + N+
Sbjct: 90 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 149
Query: 121 LEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESH 180
LEVLD+S N I V + LSD LK N+++ ++ S
Sbjct: 150 LEVLDLSANSISGANVVGWV-LSDGC-------------GELKHLAISGNKISGDVDVSR 195
Query: 181 SLTAPNFXXXXXXXXXXYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLA 240
+ + G+ FL L+++ +S K++G+F + + T+L
Sbjct: 196 CVN----LEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELK 247
Query: 241 TLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG 300
L + ++ GP +P K L L ++ N G IP + +L ++S N G
Sbjct: 248 LLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 301 SIPSSFG-------------------------NMKFLQLLDLSNNQLTGEIPEHLAVGCV 335
++P FG M+ L++LDLS N+ +GE+PE L
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 336 NLQFLMLSNNSLK---------------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 380
+L L LS+N+ + LYL NN +G IP L N + L+ + + N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 381 HLEGPIPVEFCQLYSLQILDISDNNISGSLPS-CFHPLSIEQVHLSKNMLHRQLKR---- 435
+L G IP L L+ L + N + G +P + ++E + L N L ++
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 436 -------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXX 488
LS N L G IP WIG L L+ L L +N+ G +P
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 489 XXHGSIPPC-----------FDNTTLYESYNNSSSLDEKFEISFFIE--GPQGD----FT 531
+G+IP F Y N E +E G + + +
Sbjct: 546 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 605
Query: 532 TKN----IAYIYQGKVLSLLSG------LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNL 581
T+N + +Y G L +S N L G+IP +IG++ + LNL +N++
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 582 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFA 641
+G IP +L+ + LDLS NKL+G+IP + L L ++ NNLSG I E QF
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE 724
Query: 642 TFNKSSYEGNTFLCGLPLPIC 662
TF + + N LCG PLP C
Sbjct: 725 TFPPAKFLNNPGLCGYPLPRC 745
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 134/484 (27%), Positives = 204/484 (42%), Gaps = 66/484 (13%)
Query: 219 LSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF--WLPIHSHKRLGILDISNNNIRGH 276
LS+ +NG + + + L +L L +SL+GP + S L L++S+N +
Sbjct: 81 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 277 IPVEIGDVLPSLYVFNISMNALDGS------IPSSFGNMKFLQLLDLSNNQLTGEIPEHL 330
V G L SL V ++S N++ G+ + G +K L + S N+++G++
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 192
Query: 331 AVGCVNLQFLMLSNNSLKEG------------LYLTNNSLSGNIPGWLGNLTWLIHIIMP 378
CVNL+FL +S+N+ G L ++ N LSG+ + T L + +
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 379 ENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLS 438
N GPIP L SLQ L +++N +G +P L DLS
Sbjct: 253 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL-----------DLS 299
Query: 439 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXX-HGSIPPC 497
N G++P + G S L L L NN GE+P+ G +P
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 498 FDNT-----TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYI----YQGKVLSLLS 548
N TL S NN F Q T Y+ + GK+ LS
Sbjct: 360 LTNLSASLLTLDLSSNN-------FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 549 ------GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L+LS N L G IP +G+L++++ L L N L G IP +K +E+L L +
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPI- 661
N L G+IP L L S++ N L+GEI +W + N+F +P +
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 662 -CRS 664
CRS
Sbjct: 533 DCRS 536
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 178/681 (26%), Positives = 275/681 (40%), Gaps = 114/681 (16%)
Query: 71 VKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFK------GTLD----IREFDSFNN 120
V F L LD+ N + V + +G K TLD + N+
Sbjct: 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 121 LEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESH 180
LEVLD+S N I V + LSD LK N+++ ++ S
Sbjct: 153 LEVLDLSANSISGANVVGWV-LSDGC-------------GELKHLAISGNKISGDVDVSR 198
Query: 181 SLTAPNFXXXXXXXXXXYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLA 240
+ + G+ FL L+++ +S K++G+F + + T+L
Sbjct: 199 CVN----LEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELK 250
Query: 241 TLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG 300
L + ++ GP +P K L L ++ N G IP + +L ++S N G
Sbjct: 251 LLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 301 SIPSSFG-------------------------NMKFLQLLDLSNNQLTGEIPEHLAVGCV 335
++P FG M+ L++LDLS N+ +GE+PE L
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 336 NLQFLMLSNNSLK---------------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 380
+L L LS+N+ + LYL NN +G IP L N + L+ + + N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 381 HLEGPIPVEFCQLYSLQILDISDNNISGSLPS-CFHPLSIEQVHLSKNMLHRQLKR---- 435
+L G IP L L+ L + N + G +P + ++E + L N L ++
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 436 -------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXX 488
LS N L G IP WIG L L+ L L +N+ G +P
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 489 XXHGSIPPC-----------FDNTTLYESYNNSSSLDEKFEISFFIE--GPQGD----FT 531
+G+IP F Y N E +E G + + +
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 532 TKN----IAYIYQGKVLSLLSG------LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNL 581
T+N + +Y G L +S N L G+IP +IG++ + LNL +N++
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 582 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFA 641
+G IP +L+ + LDLS NKL+G+IP + L L ++ NNLSG I E QF
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE 727
Query: 642 TFNKSSYEGNTFLCGLPLPIC 662
TF + + N LCG PLP C
Sbjct: 728 TFPPAKFLNNPGLCGYPLPRC 748
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 134/484 (27%), Positives = 204/484 (42%), Gaps = 66/484 (13%)
Query: 219 LSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF--WLPIHSHKRLGILDISNNNIRGH 276
LS+ +NG + + + L +L L +SL+GP + S L L++S+N +
Sbjct: 84 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 277 IPVEIGDVLPSLYVFNISMNALDGS------IPSSFGNMKFLQLLDLSNNQLTGEIPEHL 330
V G L SL V ++S N++ G+ + G +K L + S N+++G++
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 195
Query: 331 AVGCVNLQFLMLSNNSLKEG------------LYLTNNSLSGNIPGWLGNLTWLIHIIMP 378
CVNL+FL +S+N+ G L ++ N LSG+ + T L + +
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 379 ENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLS 438
N GPIP L SLQ L +++N +G +P L DLS
Sbjct: 256 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL-----------DLS 302
Query: 439 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXX-HGSIPPC 497
N G++P + G S L L L NN GE+P+ G +P
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 498 FDNT-----TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYI----YQGKVLSLLS 548
N TL S NN F Q T Y+ + GK+ LS
Sbjct: 363 LTNLSASLLTLDLSSNN-------FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 549 ------GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L+LS N L G IP +G+L++++ L L N L G IP +K +E+L L +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPI- 661
N L G+IP L L S++ N L+GEI +W + N+F +P +
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 662 -CRS 664
CRS
Sbjct: 536 DCRS 539
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 102/246 (41%), Gaps = 43/246 (17%)
Query: 440 NLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPPCFD 499
N L G IP I +L+QL +L + H N+ G +P G++PP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 500 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG 559
SSL I+F G+ + I Y G L + + +S N+L G
Sbjct: 146 -----------SSLPNLVGITF-----DGNRISGAIPDSY-GSFSKLFTSMTISRNRLTG 188
Query: 560 HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN-----------------------LKHIE 596
IPP NL + ++LS N L G F + K++
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 597 SLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG 656
LDL N++ G +P L +LK L +V++NNL GEI + F+ S+Y N LCG
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306
Query: 657 LPLPIC 662
PLP C
Sbjct: 307 SPLPAC 312
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 271 NNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHL 330
NN+ G IP I L L+ I+ + G+IP +K L LD S N L+G +P +
Sbjct: 87 NNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 331 AVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL-IHIIMPENHLEGPIPVE 389
+ +L L+ G+ N +SG IP G+ + L + + N L G IP
Sbjct: 146 S----SLPNLV--------GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 390 FCQLYSLQILDISDNNISGSLPSCFHP-LSIEQVHLSKNMLHRQLKR----------DLS 438
F L +L +D+S N + G F + +++HL+KN L L + DL
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252
Query: 439 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP 471
N + G++P + +L L L + NNL GE+P
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 100/227 (44%), Gaps = 24/227 (10%)
Query: 204 FPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRL 263
P + L Y+ ++H ++G P++L + T L TL ++L+G I S L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNL 151
Query: 264 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLT 323
+ N I G IP G IS N L G IP +F N+ L +DLS N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 324 GEIPEHLAVGCVNLQFLMLSNNSLK------------EGLYLTNNSLSGNIPGWLGNLTW 371
G+ L N Q + L+ NSL GL L NN + G +P L L +
Sbjct: 211 GDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 372 LIHIIMPENHLEGPIPVEFCQLYSLQILDIS----DNNISGS-LPSC 413
L + + N+L G IP Q +LQ D+S + + GS LP+C
Sbjct: 270 LHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 124/306 (40%), Gaps = 74/306 (24%)
Query: 302 IPSSFGNMKFLQLLDLSN-NQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 360
IPSS N+ +L L + N L G IP +A L +L Y+T+ ++SG
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYL-----------YITHTNVSG 115
Query: 361 NIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIE 420
IP +L + L+ + N L G +P L +L + N ISG++P + S
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 421 QVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXX 480
++ +S N L G IP L+ L+ + L N LEG+ V
Sbjct: 176 FTSMT-----------ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-------- 215
Query: 481 XXXXXXXXXXHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQ 540
L+ S N+ +K ++ KN
Sbjct: 216 ----------------------LFGSDKNT----QKIHLA------------KNSLAFDL 237
Query: 541 GKV-LSL-LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESL 598
GKV LS L+GL L N++ G +P + L + +LN+S+NNL G IP NL+ +
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296
Query: 599 DLSYNK 604
+ NK
Sbjct: 297 AYANNK 302
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 561 IPPQIGNLTRIQTLNLS-YNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 619
IP + NL + L + NNL G IP + L + L +++ ++G IP L ++KTL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 620 EVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 658
+YN LSG + + +++GN +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 526 PQGDFTTKNIAYIYQGKVLSLLSG----------LYLSCNKLIGHIPPQI-GNLTRIQTL 574
P G T I Y++ ++ L G LYL N+L G +P + +LT++ L
Sbjct: 35 PAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVL 93
Query: 575 NLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 634
+L N LT L + F L H++ L + NKL ++P + L L ++ N L
Sbjct: 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK---- 148
Query: 635 EWTAQFATFNKSSYEGNTFLCGLP 658
+ F++ S + +L G P
Sbjct: 149 --SIPHGAFDRLSSLTHAYLFGNP 170
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 29/110 (26%)
Query: 74 FDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI-- 131
FDSL +L+EL +G N++ G L + FDS L VLD+ N++
Sbjct: 60 FDSLINLKELYLGSNQL-----------------GALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 132 ------DNLVVPQELRLSDNHF-RIPISLEPLFNHSRLKIFHAKNNQMNA 174
D LV +EL + N +P +E L + + L + NQ+ +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL---DQNQLKS 149
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 265 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLDLSNNQLT 323
IL + +N I P + D L +L + N L G++P F ++ L +LDL NQLT
Sbjct: 44 ILYLHDNQITKLEP-GVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 324 GEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE 383
+P + V+L+ L + N L E +P + LT L H+ + +N L+
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLTE------------LPRGIERLTHLTHLALDQNQLK 148
Query: 384 GPIPVEFCQLYSL 396
F +L SL
Sbjct: 149 SIPHGAFDRLSSL 161
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 564 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVF 622
Q+ NL +Q LNLSYN GL F +E LD+++ L+ K PH + L L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 623 SVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG 656
++++ L A + +GN+F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 550 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 609
LYL N+ +P ++ N + ++LS N ++ L +FSN+ + +L LSYN+L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 610 PHQLVELKTLEVFSVAYNNLS 630
P LK+L + S+ N++S
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS 115
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 567 NLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY 626
N+T++ TL LSYN L + P TF LK + L L N ++ +L L ++
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135
Query: 627 NNLSGEI-LEWTAQFATFNKSSYE 649
N L + ++W + + KS Y+
Sbjct: 136 NPLYCDCNMQWLSDWV---KSEYK 156
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 40/139 (28%)
Query: 284 VLPSLYVFNISMNALDGS----IPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 339
VLP +++ LDG+ +P N K L L+DLSNN+++
Sbjct: 24 VLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS---------------- 67
Query: 340 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQIL 399
L+N S S N+T L+ +I+ N L P F L SL++L
Sbjct: 68 ------------TLSNQSFS--------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
Query: 400 DISDNNISGSLPSCFHPLS 418
+ N+IS F+ LS
Sbjct: 108 SLHGNDISVVPEGAFNDLS 126
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 22/117 (18%)
Query: 74 FDSLRDLEELDIGENKI--------DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLD 125
F L++LE L + +NK+ D+ V EL LD K +L R FDS L L
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLS 139
Query: 126 MSYNKI--------DNLVVPQELRLSDNHF-RIPISLEPLFNH-SRLKIFHAKNNQM 172
+ YN++ D L +ELRL +N R+P E F+ + LK NNQ+
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP---EGAFDKLTELKTLKLDNNQL 193
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 547 LSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 605
L+ L L N+L +PP++ +LT++ L+L YN L L F L ++ L L N+L
Sbjct: 111 LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 606 NGKIPH----QLVELKTLEV 621
++P +L ELKTL++
Sbjct: 170 K-RVPEGAFDKLTELKTLKL 188
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 544 LSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L+ L LYL+ NKL +P I L ++TL ++ N L L F L ++ L L
Sbjct: 60 LTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L L S+ YN L
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 277 IPVEIGDVLPSLYVFNISMNALDGSIPS-SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 335
+P + + L L + N ++ SIPS +F + L+ LDL + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 336 NLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWLGNLT-----WLIHIIMPE 379
NL++L L +LK E L L+ N L PG LT WL+H +
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 380 NHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLH 430
F L SL+ L++S NN+ F PL +E+VHL+ N H
Sbjct: 217 IERNA-----FDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWH 263
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 533 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL 592
K + YI + L++ YL+ P + L R++ L LS N L + P +F L
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 593 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 629
+ L L + ++ + +LK+LE ++++NNL
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 558 IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN---KLNGKIPHQLV 614
+ +P I TR LNL N++ + TF +L+H+E L LS N K+ + L
Sbjct: 26 LAEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 615 ELKTLEVFSVAYNNLSGEILEWTAQF 640
L TLE+F + + E+ ++
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKL 109
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 564 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVF 622
Q+ NL+ +QTLNLS+N GL F +E LDL++ +L+ P + L L+V
Sbjct: 368 QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVL 427
Query: 623 SVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG 656
++ Y L A + +GN F G
Sbjct: 428 NLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE 349
+P L L+ L L+NN L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 543 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L LE S+A N L+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE 349
+P L L+ L L+NN L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 543 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L LE S+A N L+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE 349
+P L L+ L L+NN L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNDLTE 162
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 543 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L LE S+A N+L+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE 349
+P L L+ L L+NN+L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 543 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L LE S+A NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE 349
+P L L+ L L+NN L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 543 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L LE S+A N L+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE 349
+P L L+ L L+NN+L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 543 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L LE S+A NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 277 IPVEIGDVLPSLYVFNISMNALDGSIPS-SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 335
+P + + L L + N ++ SIPS +F + L+ LDL + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 336 NLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWLGNLT-----WLIHIIMPE 379
NL++L L +LK E L L+ N L PG LT WL+H +
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 380 NHLEGPIPVEFCQLYSLQILDISDNNISGSLP-SCFHPL-SIEQVHLSKNMLH 430
F L SL+ L++S NN+ SLP F PL +E+VHL+ N H
Sbjct: 217 IERNA-----FDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHNPWH 263
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 533 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL 592
K + YI + L++ YL+ P + L R++ L LS N L + P +F L
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 593 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 629
+ L L + ++ + +LK+LE ++++NNL
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 558 IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN---KLNGKIPHQLV 614
+ +P I TR LNL N++ + TF +L+H+E L LS N K+ + L
Sbjct: 26 LAEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 615 ELKTLEVFSVAYNNLSGEILEWTAQF 640
L TLE+F + + E+ ++
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKL 109
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE 349
+P L L+ L L+NN L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 543 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L LE S+A N L+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 534 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLK 593
NI I QG SL + L+L NK+ + L + L LS+N+++ + + +N
Sbjct: 182 NITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 594 HIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 631
H+ L L+ NKL K+P L + K ++V + NN+S
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 283 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 342
D+ P + ++ N + F N+K L L L NN+++ P A V L+ L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYL 107
Query: 343 SNNSLKE----------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE--GPIPVEF 390
S N LKE L + N ++ L +I + + N L+ G F
Sbjct: 108 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 391 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 431
+ L + I+D NI+ ++P P S+ ++HL N + +
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKITK 206
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE 349
+P L L+ L L+NN+L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 543 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L LE S+A NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 534 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLK 593
NI I QG SL + L+L NK+ + L + L LS+N+++ + + +N
Sbjct: 182 NITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 594 HIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 631
H+ L L+ NKL K+P L + K ++V + NN+S
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 283 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 342
D+ P + ++ N + F N+K L L L NN+++ P A V L+ L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYL 107
Query: 343 SNNSLKE----------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE--GPIPVEF 390
S N LKE L + N ++ L +I + + N L+ G F
Sbjct: 108 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 391 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 431
+ L + I+D NI+ ++P P S+ ++HL N + +
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKITK 206
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE 349
+P L L+ L L+NN+L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 543 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L LE S+A NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 80 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE 349
+P L L+ L L+NN+L E
Sbjct: 138 K-TLPPGLLTPTPKLEKLSLANNNLTE 163
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 543 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 76 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 603 NKLNGKIPHQLVELKTLEVFSVAYNNLS 630
N+L P L LE S+A NNL+
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 544 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 603
L+ L LYL N+L LT+++ L L+ N L + F L ++++L LS N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 604 KLNGKIPH----QLVELKTLEVFSVAYNNLSGEIL 634
+L +PH +L +L+T+ +F ++ EIL
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 252 PFWLPIHSHK----RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFG 307
P +P + K G+ +S+ RG L L N+ N L F
Sbjct: 30 PSGIPADTEKLDLQSTGLATLSDATFRG---------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 308 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 367
++ L L L+NNQL +L + + + + LYL N L G
Sbjct: 81 DLTELGTLGLANNQL------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 368 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLP 411
LT L + + N L+ F +L +LQ L +S N + S+P
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 74 FDSLRDLEELDIGENKIDK------FVVSKELYLD-DTGFKGTLDIREFDSFNNLEVLDM 126
F DLE+L + +N+I+K + ++ L L+ F G++D R F++ + LEVLD+
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 127 SYNKIDNL 134
SYN I L
Sbjct: 355 SYNHIRAL 362
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 537 YIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIE 596
+ ++G S + LS +K+ + + T ++ L L+ N + + + F L H+
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 597 SLDLSYNKLNGKIPHQLVE-LKTLEVFSVAYNNLSG 631
L+LS N L G I ++ E L LEV ++YN++
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 568 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN 627
LT + LNLS N L + F NL +E LDLSYN + + L L+ ++ N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 628 NL 629
L
Sbjct: 382 QL 383
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 567 NLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSVA 625
NL +++ L+LSYN++ L +F L +++ L L N+L +P + + L +L+ +
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLH 403
Query: 626 YN--NLSGEILEWTAQFATFNKSSYEGNTFLCGLPLP----ICRSPATM 668
N + S +++ +++ N +G+ G P IC + A++
Sbjct: 404 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICPTSASL 452
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 568 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF--SVA 625
L R+Q LN+S+NNL L S ++ L + +LD S+N++ L+ F S+A
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-------TSKGILQHFPKSLA 543
Query: 626 YNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEA 671
+ NL+ + + F + E FL + C +P M+ +
Sbjct: 544 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTS 589
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 283 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 342
D+ S ++S N L SF N LQ LDLS ++ E E A ++ L
Sbjct: 24 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLH----HL 77
Query: 343 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 402
SN L LT N + PG LT L +++ E L QL +L+ L+++
Sbjct: 78 SN------LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 131
Query: 403 DNNI-SGSLPSCFHPLS-IEQVHLSKNMLHRQLKRDLSY 439
N I S LP+ F L+ + V LS N + DL +
Sbjct: 132 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 565 IGNLTRIQTLNLSYNNL-TGLIPSTFSNLKHIESLDLSYN 603
IG L ++ LN+++N + + +P+ FSNL ++ +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 568 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF--SVA 625
L R+Q LN+S+NNL L S ++ L + +LD S+N++ L+ F S+A
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-------TSKGILQHFPKSLA 548
Query: 626 YNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEA 671
+ NL+ + + F + E FL + C +P M+ +
Sbjct: 549 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTS 594
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 283 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 342
D+ S ++S N L SF N LQ LDLS ++ E E A ++ L
Sbjct: 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLH----HL 82
Query: 343 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 402
SN L LT N + PG LT L +++ E L QL +L+ L+++
Sbjct: 83 SN------LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 403 DNNI-SGSLPSCFHPLS-IEQVHLSKNMLHRQLKRDLSY 439
N I S LP+ F L+ + V LS N + DL +
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 565 IGNLTRIQTLNLSYNNL-TGLIPSTFSNLKHIESLDLSYN 603
IG L ++ LN+++N + + +P+ FSNL ++ +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 544 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 603
L+ L LYL N+L LT+++ L L+ N L + F L ++++L LS N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 604 KLNGKIPH----QLVELKTLEVFSVAYNNLSGEIL 634
+L +PH +L +L+T+ +F ++ E L
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCETL 199
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 252 PFWLPIHSHK----RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFG 307
P +P + K G+ +S+ RG L L N+ N L F
Sbjct: 30 PSGIPADTEKLDLQSTGLATLSDATFRG---------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 308 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 367
++ L L L+NNQL +L + + + + LYL N L G
Sbjct: 81 DLTELGTLGLANNQL------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 368 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLP 411
LT L + + N L+ F +L +LQ L +S N + S+P
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 29/224 (12%)
Query: 261 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 320
K L +L+++ N I I E L +L V N+S N L S+F + + +DL N
Sbjct: 290 KDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 321 QLTGEIPEHLAVGCVNLQFLMLSNNSLKE--------GLYLTNNSLSGNIPGWLGNLTW- 371
+ I + LQ L L +N+L ++L+ N L +P NLT
Sbjct: 349 HI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKI--NLTAN 404
Query: 372 LIHIIMPENHLEGPIPVEF-CQLYSLQILDISDN---NISGSLPSCFHPLSIEQVHLSKN 427
LIH + EN LE + F ++ LQIL ++ N + SG +P S+EQ+ L +N
Sbjct: 405 LIH--LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-SLEQLFLGEN 461
Query: 428 MLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP 471
ML + +L +++ G LS L L L HN L P
Sbjct: 462 MLQLAWETELCWDVFEG--------LSHLQVLYLNHNYLNSLPP 497
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 569 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 628
+ ++ L+LS+ + L F LK ++ L+L+YNK+N L L+V +++Y N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-N 324
Query: 629 LSGEILEWTAQFATFNKSSY 648
L GE+ +++ F K +Y
Sbjct: 325 LLGEL--YSSNFYGLPKVAY 342
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 567 NLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL--KTLEVFS 623
NL + L+LS N + L + +F L ++S+D S N++ H+L L KTL FS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 624 VAYNNLSGEI-LEW 636
+A N+L + ++W
Sbjct: 181 LAANSLYSRVSVDW 194
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 17/63 (26%)
Query: 72 KEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI 131
+ F++L+DL+ L++ NKI+K + D F G +NL+VL++SYN +
Sbjct: 284 RVFETLKDLKVLNLAYNKINK--------IADEAFYG---------LDNLQVLNLSYNLL 326
Query: 132 DNL 134
L
Sbjct: 327 GEL 329
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 26/162 (16%)
Query: 568 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN 627
L+ +Q L L++N L L P FS+L + L L+ N+L + L LE+ ++ N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536
Query: 628 NL---------SGEILEWT-------AQFATFNKSSYEGNTFLCGLPLPI-CRSPATMSE 670
L S +L+ T + +TF N + G P I C P + S
Sbjct: 537 QLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSG 596
Query: 671 ASI------GNERDDNLIDMD-SFFITFTTSYVIVIFAIVII 705
S+ G + ++ L + S FI T + + + I+ +
Sbjct: 597 VSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTV 638
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 23/116 (19%)
Query: 566 GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK---LNGKIPHQLVELKTLEVF 622
G L + L L N LTG+ P+ F HI+ L L NK ++ K+ L +LKTL ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 623 ----------------SVAYNNLSGEILEWTAQFATF----NKSSYEGNTFLCGLP 658
S+ NL+ A F K S G CG P
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 23/143 (16%)
Query: 306 FGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE-------GLY------ 352
FG + L L+L NQLTG P G ++Q L L N +KE GL+
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 353 LTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILD-ISDNNISGSLP 411
L +N +S +PG +L L + + N C + + + +++G
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN-------CNCHLAWFAEWLRKKSLNGGAA 161
Query: 412 SCFHPLSIEQVHLSKNMLHRQLK 434
C P + V + K++ H + K
Sbjct: 162 RCGAPSKVRDVQI-KDLPHSEFK 183
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 569 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 628
T I LNL++N L L + F+ + SLD+ +N ++ P +L L+V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 629 LSGEILEWTAQFAT 642
LS ++ + T F T
Sbjct: 85 LS-QLSDKTFAFCT 97
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 285 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 344
L L + +++ +D S PS F ++ L +LDLSNN + + L G L+ L L +
Sbjct: 456 LQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQH 513
Query: 345 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISD 403
N+L L ++ G +L L+ L HI+ E++ IPVE F L+ L+I+D+
Sbjct: 514 NNLAR---LWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGL 569
Query: 404 NNISGSLPSCF-HPLSIEQVHLSKNML 429
NN++ S F + +S++ ++L KN++
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLI 596
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 60/262 (22%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
+ +L++++N +R +P L ++ N + P + L++L+L +N+L
Sbjct: 27 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNL 369
+ ++ + C NL L L +NS+++ L L++N LS G L
Sbjct: 86 S-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144
Query: 370 TWLIHIIMPENHLEGPIPVEFCQLY---SLQILDISDNNISGSLPSCFHP---------- 416
L +++ N ++ + E ++ SL+ L++S N I P CFH
Sbjct: 145 ENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 417 -------------------------LSIEQVHLSKNMLHRQLK------RDLSYNLLNGS 445
LS Q+ + N LK DLSYN LN
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 446 IPDWIGELSQLSHLILGHNNLE 467
D L QL + L +NN++
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQ 285
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 569 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 628
T I LNL++N L L + F+ + SLD+ +N ++ P +L L+V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 629 LSGEILEWTAQFAT 642
LS ++ + T F T
Sbjct: 95 LS-QLSDKTFAFCT 107
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 285 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 344
L L + +++ +D S PS F ++ L +LDLSNN + + L G L+ L L +
Sbjct: 466 LQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQH 523
Query: 345 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISD 403
N+L L ++ G +L L+ L HI+ E++ IPVE F L+ L+I+D+
Sbjct: 524 NNLAR---LWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGL 579
Query: 404 NNISGSLPSCF-HPLSIEQVHLSKNMLHRQLKR 435
NN++ S F + +S++ ++L KN++ K+
Sbjct: 580 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 612
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 60/262 (22%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
+ +L++++N +R +P L ++ N + P + L++L+L +N+L
Sbjct: 37 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNL 369
+ ++ + C NL L L +NS+++ L L++N LS G L
Sbjct: 96 S-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 154
Query: 370 TWLIHIIMPENHLEGPIPVEFCQLY---SLQILDISDNNISGSLPSCFHP---------- 416
L +++ N ++ + E ++ SL+ L++S N I P CFH
Sbjct: 155 ENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 213
Query: 417 -------------------------LSIEQVHLSKNMLHRQLK------RDLSYNLLNGS 445
LS Q+ + N LK DLSYN LN
Sbjct: 214 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 273
Query: 446 IPDWIGELSQLSHLILGHNNLE 467
D L QL + L +NN++
Sbjct: 274 GNDSFAWLPQLEYFFLEYNNIQ 295
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 569 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 628
T I LNL++N L L + F+ + SLD+ +N ++ P +L L+V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 629 LSGEILEWTAQFAT 642
LS ++ + T F T
Sbjct: 90 LS-QLSDKTFAFCT 102
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 285 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 344
L L + +++ +D S PS F ++ L +LDLSNN + + L G L+ L L +
Sbjct: 461 LQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQH 518
Query: 345 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISD 403
N+L L ++ G +L L+ L HI+ E++ IPVE F L+ L+I+D+
Sbjct: 519 NNLAR---LWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGL 574
Query: 404 NNISGSLPSCF-HPLSIEQVHLSKNMLHRQLKR 435
NN++ S F + +S++ ++L KN++ K+
Sbjct: 575 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 607
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 60/262 (22%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
+ +L++++N +R +P L ++ N + P + L++L+L +N+L
Sbjct: 32 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNL 369
+ ++ + C NL L L +NS+++ L L++N LS G L
Sbjct: 91 S-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 149
Query: 370 TWLIHIIMPENHLEGPIPVEFCQLY---SLQILDISDNNISGSLPSCFHP---------- 416
L +++ N ++ + E ++ SL+ L++S N I P CFH
Sbjct: 150 ENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 208
Query: 417 -------------------------LSIEQVHLSKNMLHRQLK------RDLSYNLLNGS 445
LS Q+ + N LK DLSYN LN
Sbjct: 209 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 268
Query: 446 IPDWIGELSQLSHLILGHNNLE 467
D L QL + L +NN++
Sbjct: 269 GNDSFAWLPQLEYFFLEYNNIQ 290
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 569 TRIQTLNLSYNNLTGLIPSTFSNLK--HIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY 626
T IQ L+L+ N L STFS LK ++ LDLSYN L+ L +L S+ Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 627 NNL 629
NN+
Sbjct: 282 NNI 284
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 11/134 (8%)
Query: 287 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS 346
SL ++S N L P F + L L L+N QL + E L LSN S
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLC--------WELSNTS 223
Query: 347 LKEGLYLTNNSLSGNIPGWLGNLTW--LIHIIMPENHLEGPIPVEFCQLYSLQILDISDN 404
+ + L L NN L L W L + + N+L F L SL+ L + N
Sbjct: 224 I-QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 405 NISGSLPSCFHPLS 418
NI P F+ LS
Sbjct: 283 NIQRLSPRSFYGLS 296
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 18/200 (9%)
Query: 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 322
+ +L++++N +R P L + + N++ P + L++L+L +N+L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRY-SQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 323 TGEIPEHLAVGCVNLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNL 369
+ +I + V C NL L L +NS+ + L L++N LS G L
Sbjct: 86 S-QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQL 144
Query: 370 TWLIHIIMPENHLEG--PIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSK 426
L +++ +N + +EF SL+ LD+S N + P CF + + + L+
Sbjct: 145 ENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNN 204
Query: 427 NMLHRQLKRDLSYNLLNGSI 446
L+ L L + L N SI
Sbjct: 205 AQLNPHLTEKLCWELSNTSI 224
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 98/408 (24%), Positives = 158/408 (38%), Gaps = 86/408 (21%)
Query: 260 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG------------------- 300
+ +L ILD N+I P E+ +LP L V N+ N L
Sbjct: 48 YSQLAILDAGFNSISKLEP-ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMS 106
Query: 301 ----SIPSS-FGNMKFLQLLDLSNNQLTG-----------------EIPEHLAVGCVNLQ 338
I S+ F N K L LDLS+N L+ + LA+ L+
Sbjct: 107 NSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELE 166
Query: 339 FLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFC---QLYS 395
FL N+SL++ L L++N L PG + L +++ L + + C S
Sbjct: 167 FL--GNSSLRK-LDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTS 223
Query: 396 LQILDISDNNISGSLPSCFHPLS---IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGE 452
+Q L +++N + + S F L + Q+ LS N LH SY
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSY------------- 270
Query: 453 LSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPPCFDNTTLYESYNNSSS 512
L L +L L +NN++ P + S+ F ++ S + +
Sbjct: 271 LPSLRYLSLEYNNIQRLSP---------RSFYGLSNLRYLSLKRAFTKQSV--SLASHPN 319
Query: 513 LDE-KFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRI 571
+D+ F+ ++E D NI L+S YLS +K + + N T +
Sbjct: 320 IDDFSFQWLKYLEYLNMD--DNNIPSTKSNTFTGLVSLKYLSLSKTFTSL-QTLTNETFV 376
Query: 572 Q-------TLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 612
TLNL+ N+++ + TFS L + LDL N++ K+ Q
Sbjct: 377 SLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQ 424
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 547 LSGLYLSCNKLIGHIPPQIGNL--TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 604
+ L L+ N+L+ L T + L+LSYNNL + +FS L + L L YN
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 605 LNGKIPHQLVELKTLEVFSVA 625
+ P L L S+
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLK 304
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 564 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 608
Q+ NL+ +Q+LNLSYN L F +E LDL++ +L K
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 565 IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV 624
+ L R++ L LS+ +L+ + F++LK + +DLS+N+L L LK + ++
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530
Query: 625 AYNNLS 630
A N++S
Sbjct: 531 ASNHIS 536
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 570 RIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 628
+IQ + + YNNL + ++ K + L+ YN+L GK+P E+K L ++AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYN- 363
Query: 629 LSGEILEWTAQFATF 643
+I E A F F
Sbjct: 364 ---QITEIPANFCGF 375
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 11/96 (11%)
Query: 538 IYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL-KHIE 596
+ + K L L LY N+L G +P G+ ++ +LNL+YN +T IP+ F + +E
Sbjct: 326 LQKXKKLGXLECLY---NQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVE 380
Query: 597 SLDLSYNKLNGKIPHQLVELKTLEVFSV---AYNNL 629
+L ++NKL IP+ + + K++ V S +YN +
Sbjct: 381 NLSFAHNKLK-YIPN-IFDAKSVSVXSAIDFSYNEI 414
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 36/182 (19%)
Query: 261 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 320
+ L L + NNN++ + D+ P L +S N L+ +P N FL+++D+ NN
Sbjct: 111 QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNN 163
Query: 321 QLTGEIPEHLAVGCVNLQFLMLSNNSLKE-----------GLYLTNNSLSGNIPGWLGNL 369
L + L +L+F+ NN L+E +Y NNSL L +L
Sbjct: 164 SL-----KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-----LPDL 213
Query: 370 TWLIHIIMPENHLEGPIPVEFCQLYSLQILDI--SDNNISGSLPSCFHPLSIEQVHLSKN 427
+ I+ N+ I E +L +L L +DNN+ +LP P S+E +++ N
Sbjct: 214 PLSLESIVAGNN----ILEELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDN 267
Query: 428 ML 429
L
Sbjct: 268 YL 269
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 568 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH----QLVELKTLEVF 622
LT + LNL++N L L F L ++ LDLSYN+L +P +L +LK L ++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLY 189
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 336 NLQFLMLSNN------SLKE-----GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 384
N+++L L N +LKE L LT N L G LT L +++ EN L+
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 385 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 444
F +L +L L+++ N + SLP + L + DLSYN L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVF-----------DKLTNLTELDLSYNQLQ- 170
Query: 445 SIPDWI-GELSQLSHLILGHNNLE 467
S+P+ + +L+QL L L N L+
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 74 FDSLRDLEELDIGENKI--------DKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLD 125
FD L +L+EL + EN++ DK L L + +L FD NL LD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELD 163
Query: 126 MSYNKI--------DNLVVPQELRLSDNHFR 148
+SYN++ D L ++LRL N +
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%)
Query: 533 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL 592
K ++YI +G L + YL+ P + L ++ L+LS N+L+ + P +F L
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 593 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 630
H++ L + +++ + L++L ++A+NNL+
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 301 SIPS-SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE---------- 349
SIPS +F + L+ LDL + I E G NL++L L+ +L+E
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKL 209
Query: 350 -GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG 408
L L+ N LS PG L L + M ++ ++ F L SL ++++ NN++
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269
Query: 409 SLPSCFHPL-SIEQVHLSKN 427
F PL +E++HL N
Sbjct: 270 LPHDLFTPLHHLERIHLHHN 289
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 266 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 325
LD+S+N +R P L L V S NAL+ N+ LQ L L NN+L
Sbjct: 468 LDLSHNRLRALPPALAA--LRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQS 523
Query: 326 IPEHLAVGCVNLQFLMLSNNSL--KEGL 351
V C L L L NSL +EG+
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGI 551
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 266 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 325
LD+S+N +R P L L V S NAL+ N+ LQ L L NN+L
Sbjct: 468 LDLSHNRLRALPPALAA--LRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQS 523
Query: 326 IPEHLAVGCVNLQFLMLSNNSL--KEGL 351
V C L L L NSL +EG+
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGI 551
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 565 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 613
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 529 DFTTKNIAYIYQGKV-LSLLSGLYLSCNKLIGHIPPQIG------NLTRIQTLNLSYNNL 581
DF N+ + + V LSL + +YL I H ++ L+ ++ L ++ N+
Sbjct: 426 DFQHSNLKQMSEFSVFLSLRNLIYLD----ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481
Query: 582 T-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 628
+P F+ L+++ LDLS +L P L +L+V ++++NN
Sbjct: 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 80/203 (39%), Gaps = 45/203 (22%)
Query: 242 LFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALD-- 299
L LVN L + S KRL +N G+ E+ LPSL ++S N L
Sbjct: 333 LELVNCKFGQFPTLKLKSLKRLTF----TSNKGGNAFSEVD--LPSLEFLDLSRNGLSFK 386
Query: 300 --------GSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ-------FLMLSN 344
G+I + ++ F ++ +S+N L E EHL NL+ FL L N
Sbjct: 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446
Query: 345 -------------------NSLK--EGLYLTNNSLSGN-IPGWLGNLTWLIHIIMPENHL 382
N L E L + NS N +P L L + + + L
Sbjct: 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
Query: 383 EGPIPVEFCQLYSLQILDISDNN 405
E P F L SLQ+L++S NN
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHNN 529
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 547 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 606
L+ L LS +L P +L+ +Q LN+S+NN L + L ++ LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 607 GKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPA 666
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 556 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 611
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 565 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 613
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 529 DFTTKNIAYIYQGKV-LSLLSGLYLSCNKLIGHIPPQIG------NLTRIQTLNLSYNNL 581
DF N+ + + V LSL + +YL I H ++ L+ ++ L ++ N+
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLD----ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 582 T-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 628
+P F+ L+++ LDLS +L P L +L+V ++++NN
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 547 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 606
L+ L LS +L P +L+ +Q LN+S+NN L + L ++ LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 607 GKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPA 666
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 532 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 80/201 (39%), Gaps = 45/201 (22%)
Query: 244 LVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALD---G 300
LVN L + S KRL +N G+ E+ LPSL ++S N L
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTF----TSNKGGNAFSEVD--LPSLEFLDLSRNGLSFKGC 364
Query: 301 SIPSSFG--NMKFLQL-----LDLSNNQLTGEIPEHLAVGCVNLQ-------FLMLSN-- 344
S FG ++K+L L + +S+N L E EHL NL+ FL L N
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 345 -----------------NSLK--EGLYLTNNSLSGN-IPGWLGNLTWLIHIIMPENHLEG 384
N L E L + NS N +P L L + + + LE
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 385 PIPVEFCQLYSLQILDISDNN 405
P F L SLQ+L++S NN
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNN 505
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 565 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 613
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 565 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 607
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|4DKO|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Ts-Ii-224
pdb|4DKO|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Ts-Ii-224
pdb|4DKP|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-50
pdb|4DKP|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-50
pdb|4DKQ|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Dmj-I-228
pdb|4DKR|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-169
pdb|4DKR|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-169
pdb|4DVS|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Nbd-557
pdb|4DVS|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Nbd-557
pdb|4DVT|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-ii-37
pdb|4DVT|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-ii-37
pdb|4DVV|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-i-261
pdb|4DVV|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-i-261
pdb|4DVW|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-167
pdb|4DVW|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-167
pdb|4DVX|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-188
pdb|4DVX|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-188
Length = 353
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 385 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 444
PIP+ +C IL +D N +G+ P C + S++ H K ++ QL LLNG
Sbjct: 96 PIPIHYCTPAGYVILKCNDKNFNGTGP-CKNVSSVQCTHGIKPVVSTQL-------LLNG 147
Query: 445 SIPD 448
S+ +
Sbjct: 148 SLAE 151
>pdb|3NGB|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|A Chain A, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|D Chain D, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|I Chain I, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3SE8|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc03 In Complex With Hiv-1 Gp120
pdb|3SE9|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|3TGT|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade AE STRAIN
93TH057 GP120 Core
Length = 353
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 385 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 444
PIP+ +C IL +D N +G+ P C + S++ H K ++ QL LLNG
Sbjct: 96 PIPIHYCTPAGYVILKCNDKNFNGTGP-CKNVSSVQCTHGIKPVVSTQL-------LLNG 147
Query: 445 SIPD 448
S+ +
Sbjct: 148 SLAE 151
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 565 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 607
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 565 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 607
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 565 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 607
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3U7Y|G Chain G, Structure Of Nih45-46 Fab In Complex With Gp120 Of 93th057
Hiv
Length = 361
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 385 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 444
PIP+ +C IL +D N +G+ P C + S++ H K ++ QL LLNG
Sbjct: 96 PIPIHYCTPAGYVILKCNDKNFNGTGP-CKNVSSVQCTHGIKPVVSTQL-------LLNG 147
Query: 445 SIPD 448
S+ +
Sbjct: 148 SLAE 151
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 565 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 607
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 542 KVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 601
K L+ L+ L LS N I I G LT +Q LN S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 602 YNKLNG-KIPHQLVELKTLEVFSVAYNNLSGEI 633
NK++ + +L L++L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 36/135 (26%)
Query: 70 DVKEFDSLRDLEELDIGENKIDKFVVSKELY-----------------------LDDTGF 106
D+K +L LE LDI NK+ V +L LD+
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 107 KGTL--DIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIPISLEPLF 157
G DI S NL LD++ N+I NL P EL+L N ++ PL
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS---NISPLA 280
Query: 158 NHSRLKIFHAKNNQM 172
+ L NQ+
Sbjct: 281 GLTALTNLELNENQL 295
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 351 LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE--GPIPVEFCQLYSLQILDISDNNIS- 407
L +NN L+ + G+LT L +I+ N L+ I Q+ SLQ LDIS N++S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 408 -GSLPSCFHPLSIEQVHLSKNMLHRQLKR---------DLSYNLLNGSIPDWIGELSQLS 457
C S+ +++S N+L + R DL N + SIP + +L L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQ 447
Query: 458 HLILGHNNLEGEVP 471
L + N L+ VP
Sbjct: 448 ELNVASNQLKS-VP 460
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 565 IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV 624
I +L++++ L +S+N + L S F + +E LDLS+NKL H V LK L++
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100
Query: 625 AYNNL 629
A++ L
Sbjct: 101 AFDAL 105
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 526 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 585
P G TT + Y+Y ++ L G++ LT++ L+L N LT L
Sbjct: 33 PTGIPTTTQVLYLYDNQITKLEPGVF--------------DRLTQLTRLDLDNNQLTVLP 78
Query: 586 PSTFSNLKHIESLDLSYNKL 605
F L + L L+ N+L
Sbjct: 79 AGVFDKLTQLTQLSLNDNQL 98
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 277 IPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 336
+P I LY+++ + L+ P F + L LDL NNQLT +P +
Sbjct: 32 VPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 87
Query: 337 LQFLMLSNNSLKEGLYLTNNSLSGNIP-GWLGNLTWLIHIIMPEN 380
L L L++N LK +IP G NL L HI + N
Sbjct: 88 LTQLSLNDNQLK------------SIPRGAFDNLKSLTHIWLLNN 120
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 548 SGLYLSCN-KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 605
SG + C+ K + +P I T Q L L N +T L P F L + LDL N+L
Sbjct: 18 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 526 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 585
P G TT + Y+Y ++ L G++ LT++ L+L N LT L
Sbjct: 25 PTGIPTTTQVLYLYDNRITKLEPGVF--------------DRLTQLTRLDLDNNQLTVLP 70
Query: 586 PSTFSNLKHIESLDLSYNKL 605
F L + L L+ N+L
Sbjct: 71 AGVFDKLTQLTQLSLNDNQL 90
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 277 IPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 336
+P I LY+++ + L+ P F + L LDL NNQLT +P +
Sbjct: 24 VPTGIPTTTQVLYLYDNRITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 79
Query: 337 LQFLMLSNNSLKEGLYLTNNSLSGNIP-GWLGNLTWLIHIIMPEN 380
L L L++N LK +IP G NL L HI + N
Sbjct: 80 LTQLSLNDNQLK------------SIPRGAFDNLRSLTHIWLLNN 112
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 548 SGLYLSCN-KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 605
SG + C+ K + +P I T Q L L N +T L P F L + LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 526 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 585
P G TT + ++Y ++ L G++ S LT++ LNL+ N LT L
Sbjct: 35 PAGIPTTTQVLHLYINQITKLEPGVFDS--------------LTQLTYLNLAVNQLTALP 80
Query: 586 PSTFSNLKHIESLDLSYNKLNGKIP----HQLVELKTLEVFSVAYNNLSGEIL---EWTA 638
F L + L L N+L IP L L + +F+ ++ +IL W
Sbjct: 81 VGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIV 139
Query: 639 QFAT 642
Q A+
Sbjct: 140 QHAS 143
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 526 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 585
P G TT + Y+Y ++ L G++ LT++ L+L N LT L
Sbjct: 25 PTGIPTTTQVLYLYDNQITKLEPGVF--------------DRLTQLTRLDLDNNQLTVLP 70
Query: 586 PSTFSNLKHIESLDLSYNKL 605
F L + L L+ N+L
Sbjct: 71 AGVFDKLTQLTQLSLNDNQL 90
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 277 IPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 336
+P I LY+++ + L+ P F + L LDL NNQLT +P +
Sbjct: 24 VPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 79
Query: 337 LQFLMLSNNSLKEGLYLTNNSLSGNIP-GWLGNLTWLIHIIMPEN 380
L L L++N LK +IP G NL L HI + N
Sbjct: 80 LTQLSLNDNQLK------------SIPRGAFDNLKSLTHIWLLNN 112
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 548 SGLYLSCN-KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 605
SG + C+ K + +P I T Q L L N +T L P F L + LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 268 ISNN--NIRGHIPVEIGDVLP-SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 324
SNN + RG EI LP ++ + N + P +F K L+ +DLSNNQ++
Sbjct: 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 325 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 384
P+ G +L L+L N + E +P L + + +++ +
Sbjct: 71 LAPDAFQ-GLRSLNSLVLYGNKITE------------LPKSLFEGLFSLQLLLLNANKIN 117
Query: 385 PIPVE-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKN 427
+ V+ F L++L +L + DN + F PL +I+ +HL++N
Sbjct: 118 XLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 24/131 (18%)
Query: 238 KLATLFLVNDSLAGPFWLPIHSH--KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISM 295
+L TL L + L F + + + L LD+S N++ H S+ V N+S
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437
Query: 296 NALDGS---------------------IPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGC 334
N L GS IP +++ LQ L++++NQL +P+ +
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRL 496
Query: 335 VNLQFLMLSNN 345
+LQ++ L +N
Sbjct: 497 TSLQYIWLHDN 507
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 529 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPST 588
D++ +N+ ++ + + L LS N + P I L+ ++ L LS+N + L
Sbjct: 37 DYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95
Query: 589 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSY 648
F + +E LD+S+N+L + L+ L+ +++N+ ++L +F K ++
Sbjct: 96 FLFNQDLEYLDVSHNRLQNISCCPMASLRHLD---LSFNDF--DVLPVCKEFGNLTKLTF 150
Query: 649 EG 650
G
Sbjct: 151 LG 152
>pdb|2QAD|A Chain A, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|E Chain E, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 322
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 385 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 444
PIP+ +C IL +D +G+ P C + +++ H + ++ QL LLNG
Sbjct: 51 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQL-------LLNG 102
Query: 445 SIPD 448
S+ +
Sbjct: 103 SLAE 106
>pdb|1G9N|G Chain G, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|G Chain G, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1YYL|G Chain G, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYL|P Chain P, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYM|G Chain G, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|1YYM|P Chain P, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|G Chain G, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|P Chain P, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|G Chain G, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|P Chain P, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
Length = 313
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 370 TWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML 429
T +I P+ E PIP+ +C IL +D +G+ P C + +++ H + ++
Sbjct: 56 TSVITQACPKVSFE-PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVV 113
Query: 430 HRQLKRDLSYNLLNGSIPD 448
QL LLNGS+ +
Sbjct: 114 STQL-------LLNGSLAE 125
>pdb|3HI1|G Chain G, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
pdb|3HI1|J Chain J, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
Length = 321
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 385 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 444
PIP+ +C IL +D +G+ P C + +++ H + ++ QL LLNG
Sbjct: 50 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQL-------LLNG 101
Query: 445 SIPD 448
S+ +
Sbjct: 102 SLAE 105
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 268 ISNN--NIRGHIPVEIGDVLP-SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 324
SNN + RG EI LP ++ + N + P +F K L+ +DLSNNQ++
Sbjct: 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 325 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL-GNLTWLIHIIMPENHLE 383
P+ G +L L+L N + E +P L L L +++ N +
Sbjct: 71 LAPDAFQ-GLRSLNSLVLYGNKITE------------LPKSLFEGLFSLQLLLLNANKIN 117
Query: 384 GPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKN 427
F L++L +L + DN + F PL +I+ +HL++N
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3TGQ|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|B Chain B, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|C Chain C, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|D Chain D, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
Length = 352
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 385 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 444
PIP+ +C IL +D +G+ P C + +++ H + ++ QL LLNG
Sbjct: 96 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQL-------LLNG 147
Query: 445 SIPD 448
S+ +
Sbjct: 148 SLAE 151
>pdb|4DVR|G Chain G, Crystal Structure Of Yu2 Gp120 Core In Complex With Fab
48d And Nbd- 557
Length = 313
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 385 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 444
PIP+ +C IL +D +G+ P C + +++ H + ++ QL LLNG
Sbjct: 57 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQL-------LLNG 108
Query: 445 SIPD 448
S+ +
Sbjct: 109 SLAE 112
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 546 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGL 584
L+ LYL+ N L +P +I NL+ ++ L+LS+N LT L
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 16/75 (21%)
Query: 285 LPSLYVFNISMNA----------LDGS----IPSSFGNMKFLQLLDLSNNQLTGEIPEHL 330
L +L +FNIS N L+G+ +P+ N+ L++LDLS+N+LT +P L
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 331 AVGCVNLQFLMLSNN 345
C L++ +N
Sbjct: 290 G-SCFQLKYFYFFDN 303
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 31/150 (20%)
Query: 302 IPSSFGN-MKFLQLLDLSNNQLTGEIPEHLAVGCV--NLQFLMLSNNSLKEGLYLTNNSL 358
+P SF +K L+ LDLS N + E ++ A +LQ L+LS N +L +
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN------HLRSMQK 404
Query: 359 SGNIPGWLGNLTWL------IHIIMPEN------------HLEGPIPVEFCQLYSLQILD 400
+G I L NLT L H MP++ G V+ C +L++LD
Sbjct: 405 TGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD 463
Query: 401 ISDNNISGSLPSCFHPLSIEQVHLSKNMLH 430
+S+NN+ S F P ++++++S+N L
Sbjct: 464 VSNNNLDSF--SLFLP-RLQELYISRNKLK 490
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 542 KVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 601
K L+ L+ L LS N I I G LT +Q L+ S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 602 YNKLNG-KIPHQLVELKTLEVFSVAYNNLSGEI 633
NK++ + +L L++L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 36/135 (26%)
Query: 70 DVKEFDSLRDLEELDIGENKIDKFVVSKELY-----------------------LDDTGF 106
D+K +L LE LDI NK+ V +L LD+
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 107 KGTL--DIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIPISLEPLF 157
G DI S NL LD++ N+I NL P EL+L N ++ PL
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS---NISPLA 280
Query: 158 NHSRLKIFHAKNNQM 172
+ L NQ+
Sbjct: 281 GLTALTNLELNENQL 295
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 302 IPSSFGN-MKFLQLLDLSNNQLTGEIPEHLAVGCV--NLQFLMLSNNSLKEGLYLTNNSL 358
+P SF +K L+ LDLS N + E ++ A +LQ L+LS N +L +
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN------HLRSMQK 378
Query: 359 SGNIPGWLGNLTWL-----IHIIMPEN------------HLEGPIPVEFCQLYSLQILDI 401
+G I L NLT L MP++ G V+ C +L++LD+
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDV 438
Query: 402 SDNNISGSLPSCFHPLSIEQVHLSKNMLH 430
S+NN+ S F P ++++++S+N L
Sbjct: 439 SNNNLDSF--SLFLP-RLQELYISRNKLK 464
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 542 KVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 601
K L+ L+ L LS N I I G LT +Q L+ S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 602 YNKLNG-KIPHQLVELKTLEVFSVAYNNLSGEI 633
NK++ + +L L++L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 36/135 (26%)
Query: 70 DVKEFDSLRDLEELDIGENKIDKFVVSKELY-----------------------LDDTGF 106
D+K +L LE LDI NK+ V +L LD+
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 107 KGTL--DIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIPISLEPLF 157
G DI S NL LD++ N+I NL P EL+L N ++ PL
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS---NISPLA 280
Query: 158 NHSRLKIFHAKNNQM 172
+ L NQ+
Sbjct: 281 GLTALTNLELNENQL 295
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 529 DFTTKNIAYIYQGKV-LSLLSGLYLSCNKLIGHIPPQIG------NLTRIQTLNLSYNNL 581
DF N+ + + V LSL + +YL I H ++ L+ ++ L ++ N+
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLD----ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 582 T-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 628
+P F+ L+++ LDLS +L P L +L+V ++++NN
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 42/201 (20%)
Query: 292 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLT------GEIPEHLAVGCVNLQFL---ML 342
N +M L ++ SF ++ L L DL ++ + L +G +++L +
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119
Query: 343 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 402
N L L L N LS G N L + M N+LE F SLQ L +S
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179
Query: 403 DNNIS----GSLPSCFH-------------PLSIEQVHLSKNMLHRQLKRDLSYNLLNGS 445
N ++ +PS FH P+++E++ S N S N++ G
Sbjct: 180 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN----------SINVVRGP 229
Query: 446 IPDWIGELSQLSHLILGHNNL 466
+ +L+ L L HNNL
Sbjct: 230 VN------VELTILKLQHNNL 244
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 42/201 (20%)
Query: 292 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLT------GEIPEHLAVGCVNLQFL---ML 342
N +M L ++ SF ++ L L DL ++ + L +G +++L +
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113
Query: 343 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 402
N L L L N LS G N L + M N+LE F SLQ L +S
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173
Query: 403 DNNIS----GSLPSCFH-------------PLSIEQVHLSKNMLHRQLKRDLSYNLLNGS 445
N ++ +PS FH P+++E++ S N S N++ G
Sbjct: 174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN----------SINVVRGP 223
Query: 446 IPDWIGELSQLSHLILGHNNL 466
+ +L+ L L HNNL
Sbjct: 224 VN------VELTILKLQHNNL 238
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 36/135 (26%)
Query: 70 DVKEFDSLRDLEELDIGENKIDKFVVSKELY-----------------------LDDTGF 106
D+K +L LE LDI NK+ V +L LD+
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 228
Query: 107 KGTL--DIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIPISLEPLF 157
G DI S NL LD++ N+I NL P EL+L N ++ PL
Sbjct: 229 NGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS---NISPLA 284
Query: 158 NHSRLKIFHAKNNQM 172
+ L NQ+
Sbjct: 285 GLTALTNLELNENQL 299
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 544 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 603
L+ L+ LYL NKL LT + LNLS N L L F L ++ L L+ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 604 KLNG---KIPHQLVELKTLEVF 622
+L + +L +LK L ++
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLY 132
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 36/135 (26%)
Query: 70 DVKEFDSLRDLEELDIGENKIDKFVVSKELY-----------------------LDDTGF 106
D+K +L LE LDI NK+ V +L LD+
Sbjct: 168 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 227
Query: 107 KGTL--DIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIPISLEPLF 157
G DI S NL LD++ N+I NL P EL+L N ++ PL
Sbjct: 228 NGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS---NISPLA 283
Query: 158 NHSRLKIFHAKNNQM 172
+ L NQ+
Sbjct: 284 GLTALTNLELNENQL 298
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 36/135 (26%)
Query: 70 DVKEFDSLRDLEELDIGENKIDKFVVSKELY-----------------------LDDTGF 106
D+K +L LE LDI NK+ V +L LD+
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 223
Query: 107 KGTL--DIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIPISLEPLF 157
G DI S NL LD++ N+I NL P EL+L N ++ PL
Sbjct: 224 NGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS---NISPLA 279
Query: 158 NHSRLKIFHAKNNQM 172
+ L NQ+
Sbjct: 280 GLTALTNLELNENQL 294
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 36/135 (26%)
Query: 70 DVKEFDSLRDLEELDIGENKIDKFVVSKELY-----------------------LDDTGF 106
D+K +L LE LDI NK+ V +L LD+
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 223
Query: 107 KGTL--DIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIPISLEPLF 157
G DI S NL LD++ N+I NL P EL+L N ++ PL
Sbjct: 224 NGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS---NISPLA 279
Query: 158 NHSRLKIFHAKNNQM 172
+ L NQ+
Sbjct: 280 GLTALTNLELNENQL 294
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 376 IMPENHLEGPIP-VEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK-NMLHR 431
I+PENH+ P+ EF Q S IL + ++ H +S E HLSK MLHR
Sbjct: 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHR 69
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 19/159 (11%)
Query: 276 HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 335
++P +L + + NAL G ++F + L+ LDLS+N + G
Sbjct: 45 YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 336 NLQFLMLSNNSLKE-------------GLYLTNNSLSG---NIPGWLGNLTWLIHIIMPE 379
+L L L L+E LYL +N+L N LGNLT H+ +
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT---HLFLHG 161
Query: 380 NHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS 418
N + F L+SL L + N+++ P F L
Sbjct: 162 NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 348 KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 407
K+ L+L NN ++ PG +L L + N L F +L L LD++DN++
Sbjct: 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 408 GSLPSCFHPL-SIEQVHLSKN 427
F L S+ ++L N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 21/117 (17%)
Query: 301 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK------------ 348
SIPS G + ++ LDLSNN++T I CVNLQ L+L++N +
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Query: 349 -EGLYLTNNSLSGNIPGW---LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 401
E L L+ N LS W L +LT+L + P L G + F L LQIL +
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSL-FSHLTKLQILRV 156
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 21/117 (17%)
Query: 301 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK------------ 348
SIPS G + ++ LDLSNN++T I CVNLQ L+L++N +
Sbjct: 19 SIPS--GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 349 -EGLYLTNNSLSGNIPGW---LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 401
E L L+ N LS W L +LT+L + P L G + F L LQIL +
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSL-FSHLTKLQILRV 130
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 13/156 (8%)
Query: 276 HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 335
H+P +L + + N L ++F + L+ LDLS+N + G
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 336 NLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHL 382
L L L L+E LYL +N+L +L L H+ + N +
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 383 EGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS 418
F L+SL L + N ++ P F L
Sbjct: 165 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 13/156 (8%)
Query: 276 HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 335
H+P +L + + N L ++F + L+ LDLS+N + G
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 336 NLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHL 382
L L L L+E LYL +N+L +L L H+ + N +
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 383 EGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS 418
F L+SL L + N ++ P F L
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 522 FIEGPQGDFTTKNIAYIYQGKVLSL----------LSGLYLSCNKLIGHIPPQIGNLTRI 571
F+ P+G T + + + ++ +L L L L+ N + P NL +
Sbjct: 23 FVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 572 QTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 629
+TL L N L + F+ L ++ LD+S NK+ + + +L L+ V N+L
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,010,374
Number of Sequences: 62578
Number of extensions: 859063
Number of successful extensions: 2451
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1639
Number of HSP's gapped (non-prelim): 577
length of query: 742
length of database: 14,973,337
effective HSP length: 106
effective length of query: 636
effective length of database: 8,340,069
effective search space: 5304283884
effective search space used: 5304283884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)