Query 004617
Match_columns 742
No_of_seqs 401 out of 4028
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:18:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-57 4.7E-62 543.0 42.1 547 17-658 58-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6E-52 1.3E-56 496.1 42.5 524 39-658 58-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.2E-41 9E-46 339.6 6.1 380 188-640 79-463 (873)
4 KOG4194 Membrane glycoprotein 100.0 1E-39 2.2E-44 329.5 5.2 394 213-678 79-493 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 6.3E-39 1.4E-43 310.3 -14.3 474 26-631 42-542 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.2E-35 7E-40 284.7 -13.9 485 73-654 40-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.4E-33 3.1E-38 300.5 -5.6 472 55-627 23-510 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 2.3E-32 5E-37 278.2 -3.0 360 189-628 9-373 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 6.1E-32 1.3E-36 275.1 -3.8 372 28-610 6-379 (1255)
10 KOG0618 Serine/threonine phosp 100.0 1.1E-30 2.4E-35 278.6 -5.2 471 58-631 3-490 (1081)
11 KOG4237 Extracellular matrix p 99.9 1.3E-26 2.9E-31 224.9 -2.1 310 261-652 67-380 (498)
12 KOG4237 Extracellular matrix p 99.9 2.5E-26 5.5E-31 223.0 -1.2 291 30-432 68-361 (498)
13 PLN03210 Resistant to P. syrin 99.9 2.9E-20 6.4E-25 222.9 26.5 347 206-628 552-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 2.5E-20 5.5E-25 223.5 24.8 336 231-649 552-901 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 2.1E-20 4.6E-25 207.4 16.4 263 263-637 203-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 3.2E-19 6.9E-24 198.2 16.5 63 546-613 403-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 4.6E-18 1E-22 190.4 11.9 119 262-408 179-297 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 1.1E-17 2.5E-22 187.3 13.1 160 213-407 179-338 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-18 6E-23 179.3 -2.7 85 545-629 221-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 1.1E-17 2.4E-22 174.7 -3.0 266 290-632 2-293 (319)
21 KOG0617 Ras suppressor protein 99.6 5E-18 1.1E-22 146.6 -5.1 183 368-635 31-217 (264)
22 KOG0617 Ras suppressor protein 99.5 4.8E-16 1E-20 134.4 -1.6 159 259-470 31-189 (264)
23 PLN03150 hypothetical protein; 99.4 4.4E-13 9.6E-18 150.2 11.2 117 546-662 419-537 (623)
24 KOG1259 Nischarin, modulator o 99.1 2.1E-11 4.6E-16 115.4 0.9 132 453-633 283-415 (490)
25 KOG0532 Leucine-rich repeat (L 99.1 5.5E-12 1.2E-16 129.6 -3.8 195 308-603 73-270 (722)
26 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3.1E-15 106.1 5.6 123 23-168 13-148 (175)
27 KOG0532 Leucine-rich repeat (L 99.0 2.6E-11 5.7E-16 124.7 -1.7 194 260-488 74-270 (722)
28 PLN03150 hypothetical protein; 99.0 7.9E-10 1.7E-14 124.2 8.0 114 479-635 419-533 (623)
29 COG4886 Leucine-rich repeat (L 99.0 9E-10 2E-14 118.4 7.0 60 286-348 116-176 (394)
30 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.5E-15 109.5 0.6 114 446-607 299-413 (490)
31 KOG3207 Beta-tubulin folding c 98.9 2.7E-10 5.8E-15 113.9 2.0 40 93-133 120-160 (505)
32 COG4886 Leucine-rich repeat (L 98.9 1E-09 2.2E-14 117.9 6.5 178 394-634 116-294 (394)
33 KOG3207 Beta-tubulin folding c 98.9 1.4E-10 3.1E-15 115.8 -0.3 40 452-491 299-339 (505)
34 KOG1909 Ran GTPase-activating 98.9 4.1E-11 8.9E-16 116.5 -4.0 86 545-630 213-311 (382)
35 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.4E-14 82.3 2.9 60 546-605 2-61 (61)
36 KOG1909 Ran GTPase-activating 98.9 1.6E-10 3.4E-15 112.5 -2.2 249 183-490 26-310 (382)
37 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.6E-14 81.3 3.3 61 569-629 1-61 (61)
38 PF14580 LRR_9: Leucine-rich r 98.8 2E-09 4.4E-14 98.5 4.2 103 49-173 15-126 (175)
39 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.4E-14 116.5 -0.2 247 285-635 71-323 (414)
40 KOG0531 Protein phosphatase 1, 98.6 4.4E-09 9.5E-14 113.1 -1.8 105 285-407 94-199 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.5 5.2E-08 1.1E-12 112.0 4.4 127 262-404 524-652 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.5 8.7E-08 1.9E-12 110.2 5.5 130 235-380 521-652 (889)
43 KOG1859 Leucine-rich repeat pr 98.4 7.3E-09 1.6E-13 109.8 -6.0 44 446-491 179-222 (1096)
44 KOG2982 Uncharacterized conser 98.3 1.3E-07 2.9E-12 90.1 -0.3 104 52-170 44-156 (418)
45 KOG1859 Leucine-rich repeat pr 98.3 1.4E-08 3.1E-13 107.7 -7.9 147 24-174 104-293 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.2 5E-08 1.1E-12 93.0 -5.3 174 78-272 185-374 (419)
47 KOG2120 SCF ubiquitin ligase, 98.2 5.8E-08 1.3E-12 92.5 -5.4 175 30-247 186-373 (419)
48 KOG2982 Uncharacterized conser 98.2 2.2E-07 4.7E-12 88.7 -1.6 82 544-625 198-287 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.1 3.7E-07 7.9E-12 86.0 -2.2 68 24-91 25-105 (388)
50 COG5238 RNA1 Ran GTPase-activa 97.9 8E-07 1.7E-11 83.8 -3.0 145 257-408 88-256 (388)
51 KOG4579 Leucine-rich repeat (L 97.9 5.5E-07 1.2E-11 76.0 -3.9 88 546-636 78-165 (177)
52 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 54.8 3.0 36 54-91 2-37 (44)
53 KOG1644 U2-associated snRNP A' 97.8 3.3E-05 7.1E-10 70.2 5.1 107 285-404 41-150 (233)
54 KOG3665 ZYG-1-like serine/thre 97.8 1.5E-05 3.2E-10 89.7 3.1 104 29-133 122-234 (699)
55 KOG4579 Leucine-rich repeat (L 97.7 3.1E-06 6.7E-11 71.6 -1.9 81 262-346 54-134 (177)
56 PF12799 LRR_4: Leucine Rich r 97.7 4E-05 8.6E-10 52.4 2.9 36 570-606 2-37 (44)
57 PF13306 LRR_5: Leucine rich r 97.6 0.0001 2.2E-09 65.1 6.2 103 233-342 8-110 (129)
58 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.5E-09 66.8 6.2 99 30-133 20-127 (233)
59 PF13306 LRR_5: Leucine rich r 97.6 0.00021 4.6E-09 63.0 7.1 122 208-338 8-129 (129)
60 KOG3665 ZYG-1-like serine/thre 97.5 3.1E-05 6.6E-10 87.2 1.0 94 78-171 122-231 (699)
61 KOG4341 F-box protein containi 97.5 1E-05 2.2E-10 81.4 -2.5 16 333-348 399-414 (483)
62 KOG4341 F-box protein containi 97.4 1.7E-05 3.6E-10 79.9 -2.7 157 186-342 293-459 (483)
63 PRK15386 type III secretion pr 97.2 0.00091 2E-08 69.4 7.9 76 390-490 48-124 (426)
64 PRK15386 type III secretion pr 97.2 0.0014 3E-08 68.1 8.8 54 416-488 51-104 (426)
65 KOG2123 Uncharacterized conser 96.5 0.00022 4.8E-09 68.0 -3.1 85 28-133 18-102 (388)
66 KOG2123 Uncharacterized conser 96.4 0.00019 4.2E-09 68.4 -4.0 87 309-411 18-105 (388)
67 KOG2739 Leucine-rich acidic nu 96.4 0.0023 5E-08 61.1 2.7 35 51-88 41-75 (260)
68 KOG2739 Leucine-rich acidic nu 95.7 0.0051 1.1E-07 58.9 1.8 97 28-127 42-151 (260)
69 TIGR00864 PCC polycystin catio 94.8 0.022 4.7E-07 71.6 3.6 76 599-680 1-77 (2740)
70 KOG1947 Leucine rich repeat pr 93.9 0.011 2.4E-07 65.5 -1.4 64 210-273 241-307 (482)
71 PF00560 LRR_1: Leucine Rich R 93.6 0.026 5.7E-07 31.9 0.6 12 571-582 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 93.0 0.042 9.1E-07 31.0 0.7 20 594-614 1-20 (22)
73 KOG1947 Leucine rich repeat pr 92.7 0.019 4.2E-07 63.5 -1.9 185 211-396 187-389 (482)
74 smart00370 LRR Leucine-rich re 91.7 0.13 2.9E-06 30.3 1.9 21 569-589 2-22 (26)
75 smart00369 LRR_TYP Leucine-ric 91.7 0.13 2.9E-06 30.3 1.9 21 569-589 2-22 (26)
76 smart00370 LRR Leucine-rich re 90.6 0.24 5.2E-06 29.2 2.2 23 309-332 1-23 (26)
77 smart00369 LRR_TYP Leucine-ric 90.6 0.24 5.2E-06 29.2 2.2 23 309-332 1-23 (26)
78 KOG4308 LRR-containing protein 90.6 0.0013 2.8E-08 71.0 -13.4 61 547-607 235-304 (478)
79 KOG4308 LRR-containing protein 90.1 0.0019 4E-08 69.8 -12.8 42 450-491 257-303 (478)
80 PF13504 LRR_7: Leucine rich r 89.4 0.24 5.1E-06 25.9 1.3 11 312-322 3-13 (17)
81 KOG0473 Leucine-rich repeat pr 84.8 0.021 4.5E-07 53.5 -7.3 90 22-132 35-124 (326)
82 KOG3864 Uncharacterized conser 84.4 0.085 1.8E-06 48.7 -3.5 81 239-319 103-185 (221)
83 KOG3864 Uncharacterized conser 83.0 0.25 5.4E-06 45.7 -1.1 79 30-128 102-185 (221)
84 KOG0473 Leucine-rich repeat pr 82.5 0.048 1E-06 51.2 -5.9 84 544-630 41-124 (326)
85 PF13516 LRR_6: Leucine Rich r 78.1 0.53 1.1E-05 27.1 -0.5 17 29-45 2-18 (24)
86 smart00365 LRR_SD22 Leucine-ri 77.6 2.2 4.8E-05 25.2 2.0 14 78-91 2-15 (26)
87 smart00364 LRR_BAC Leucine-ric 70.3 3.4 7.4E-05 24.3 1.5 17 79-95 3-19 (26)
88 PF08693 SKG6: Transmembrane a 69.8 5.1 0.00011 26.4 2.4 26 689-714 13-38 (40)
89 PTZ00382 Variant-specific surf 60.7 16 0.00034 29.9 4.3 21 688-708 68-88 (96)
90 smart00368 LRR_RI Leucine rich 57.4 4.9 0.00011 24.2 0.7 15 29-43 2-16 (28)
91 KOG4242 Predicted myosin-I-bin 56.1 43 0.00092 35.7 7.4 63 261-329 165-233 (553)
92 TIGR00864 PCC polycystin catio 55.1 8.9 0.00019 49.7 2.9 35 575-609 1-35 (2740)
93 KOG3763 mRNA export factor TAP 53.6 6.1 0.00013 42.6 1.0 61 545-606 218-283 (585)
94 KOG3763 mRNA export factor TAP 51.4 10 0.00022 41.0 2.3 16 76-91 216-231 (585)
95 PF04478 Mid2: Mid2 like cell 42.7 11 0.00023 33.3 0.7 15 687-701 50-64 (154)
96 KOG4242 Predicted myosin-I-bin 35.9 1.8E+02 0.0039 31.3 8.3 17 258-274 437-453 (553)
97 PF15102 TMEM154: TMEM154 prot 31.8 19 0.00041 31.6 0.5 8 706-713 79-86 (146)
98 PF08374 Protocadherin: Protoc 29.6 51 0.0011 31.0 2.9 22 687-708 39-60 (221)
99 PF01102 Glycophorin_A: Glycop 28.2 12 0.00025 32.1 -1.3 17 689-705 67-83 (122)
100 smart00367 LRR_CC Leucine-rich 27.1 48 0.001 19.3 1.6 13 52-64 1-13 (26)
101 PF12191 stn_TNFRSF12A: Tumour 25.4 48 0.001 28.2 1.8 14 704-717 97-110 (129)
102 PF02009 Rifin_STEVOR: Rifin/s 23.0 38 0.00082 34.3 0.9 13 702-714 271-283 (299)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-57 Score=543.00 Aligned_cols=547 Identities=31% Similarity=0.439 Sum_probs=453.7
Q ss_pred eeccChhhhcCCCCCCEEeCCCCcCCccccccccCCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCC----
Q 004617 17 ILFAGIERLSRLNNLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK---- 92 (742)
Q Consensus 17 ~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~---- 92 (742)
+.|.++.+- +..+++.||+++|.+++..+.+|..+++|+.|+|++|.+++.+|.+.+..+++|++|+|++|++++
T Consensus 58 c~w~gv~c~-~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~ 136 (968)
T PLN00113 58 CLWQGITCN-NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136 (968)
T ss_pred CcCcceecC-CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence 445555442 346899999999999999999999999999999999999888997777799999999999998863
Q ss_pred --CcccceeecCCCcceeccCHhhhcCCCCcCEEEccCCCCCCCCCCCEEecCCCccccccCcccccCCCCCcEEEccCC
Q 004617 93 --FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNN 170 (742)
Q Consensus 93 --l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 170 (742)
+++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+ .. ...+.++++|+.|++++|
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~----------------~~-p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVG----------------KI-PNSLTNLTSLEFLTLASN 198 (968)
T ss_pred cccCCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccc----------------cC-ChhhhhCcCCCeeeccCC
Confidence 77889999999998888887 78889999999998887753 11 134556666666666666
Q ss_pred cccccccccccCCCCCccceEEEeecCCCCCCccChhccCCCCCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCcccc
Q 004617 171 QMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLA 250 (742)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~ 250 (742)
.+....+.. +....+|++|++ +++.+.+.+|..+..+++|++|++++|.+++..|..+ +++++|+.|++++|.+.
T Consensus 199 ~l~~~~p~~---l~~l~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 199 QLVGQIPRE---LGQMKSLKWIYL-GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLS 273 (968)
T ss_pred CCcCcCChH---HcCcCCccEEEC-cCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeee
Confidence 654433322 233456777777 6666677788888888888888888888888888775 78888888888888888
Q ss_pred ccCccCCCCCCCcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhh
Q 004617 251 GPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHL 330 (742)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 330 (742)
+..|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 888888888888888999888888777766554 7788899998888888888888888889999999888887777655
Q ss_pred hhcCCCCcEEEccccccccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccC
Q 004617 331 AVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSL 410 (742)
Q Consensus 331 ~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 410 (742)
. .+++|+.|++++|.+.. ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..
T Consensus 353 ~-~~~~L~~L~Ls~n~l~~-----------~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 353 G-KHNNLTVLDLSTNNLTG-----------EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred h-CCCCCcEEECCCCeeEe-----------eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 4 68888888887776553 56777888888888999999888888888888899999999999888877
Q ss_pred CCCCC-CCCccEEEccCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCe
Q 004617 411 PSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNS 489 (742)
Q Consensus 411 ~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 489 (742)
+..+. ++.|+.+++++|.+.+ .++..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|+
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQG-------------RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccC-------------ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 77666 7888888777666554 566667778999999999999988877765 45889999999999
Q ss_pred eeecCCCCcccccccccccCCCCCcccccccccccCCCcccccccchheecccccccccEEEccCCcCCCCCcccccCcC
Q 004617 490 LHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLT 569 (742)
Q Consensus 490 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 569 (742)
+.+..|..+..+ +.|+.|+|++|.+.+.+|..+.+++
T Consensus 487 l~~~~~~~~~~l-------------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 487 FSGAVPRKLGSL-------------------------------------------SELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred cCCccChhhhhh-------------------------------------------hccCEEECcCCcceeeCChHHcCcc
Confidence 998888777654 4899999999999999999999999
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEecCCCcccccccccccccccCCccccc
Q 004617 570 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYE 649 (742)
Q Consensus 570 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 649 (742)
+|++|+|++|.+++.+|..|+++++|+.|++++|++++.+|..+..+++|+.+++++|++.+.+|.. .++.++....+.
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~ 602 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVA 602 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999974 677888888899
Q ss_pred CCcCCCCCC
Q 004617 650 GNTFLCGLP 658 (742)
Q Consensus 650 ~n~~~c~~~ 658 (742)
+|+.+|+.+
T Consensus 603 ~n~~lc~~~ 611 (968)
T PLN00113 603 GNIDLCGGD 611 (968)
T ss_pred CCccccCCc
Confidence 999999743
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6e-52 Score=496.13 Aligned_cols=524 Identities=28% Similarity=0.422 Sum_probs=457.9
Q ss_pred CcCCccccccccCCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCCCcccceeecCCCcceeccCHhhhcCC
Q 004617 39 NSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSF 118 (742)
Q Consensus 39 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 118 (742)
|.+.++... +..+++.|+|++|.+++.++ ..|..+++|++|+|++|+++ +.+|...+..+
T Consensus 58 c~w~gv~c~---~~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~----------------~~ip~~~~~~l 117 (968)
T PLN00113 58 CLWQGITCN---NSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLS----------------GPIPDDIFTTS 117 (968)
T ss_pred CcCcceecC---CCCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccC----------------CcCChHHhccC
Confidence 444444433 24589999999999997776 78999999999999977664 46776556688
Q ss_pred CCcCEEEccCCCCCC------CCCCCEEecCCCccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCccceEE
Q 004617 119 NNLEVLDMSYNKIDN------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSL 192 (742)
Q Consensus 119 ~~L~~L~Ls~n~l~~------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 192 (742)
++|++|++++|++++ ++.|++|++++|.+++..+ ..+.++++|+.|++++|.+....+.. +....+|++|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L 193 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNS---LTNLTSLEFL 193 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCcccccCChh---hhhCcCCCee
Confidence 888888888888763 6788888888888875544 56889999999999999876554433 3456789999
Q ss_pred EeecCCCCCCccChhccCCCCCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEEcccCc
Q 004617 193 SLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN 272 (742)
Q Consensus 193 ~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 272 (742)
++ +++.+.+.+|..+..+++|++|++++|.+++.+|..+ .++++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 194 ~L-~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 194 TL-ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred ec-cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 99 8888888999999999999999999999998888886 789999999999999999899999999999999999999
Q ss_pred CcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEcccccccccee
Q 004617 273 IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLY 352 (742)
Q Consensus 273 i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~ 352 (742)
+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+ .++++|+.|++++|.+..
T Consensus 272 l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~--- 346 (968)
T PLN00113 272 LSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSG--- 346 (968)
T ss_pred eeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcC---
Confidence 98888887765 7899999999999998899999999999999999999987777655 479999999988877653
Q ss_pred cccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCC-CCCccEEEccCccccc
Q 004617 353 LTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHR 431 (742)
Q Consensus 353 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~ 431 (742)
..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|++++
T Consensus 347 --------~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 347 --------EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred --------cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 6788889999999999999999999999999999999999999999988887766 8899999888776654
Q ss_pred ccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCC
Q 004617 432 QLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSS 511 (742)
Q Consensus 432 ~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 511 (742)
..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.+|..+.
T Consensus 419 -------------~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------------ 473 (968)
T PLN00113 419 -------------ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------------ 473 (968)
T ss_pred -------------ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc------------
Confidence 6677888999999999999999999998889999999999999999988776543
Q ss_pred CCcccccccccccCCCcccccccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccC
Q 004617 512 SLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN 591 (742)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 591 (742)
.++|+.|++++|++.+..|..|.++++|++|+|++|++++.+|..+.+
T Consensus 474 --------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 474 --------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred --------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence 237999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEECcCCcccccCCccccCCCCCCeEecCCCcccccccccccccccCCcccccCCcCCCCCC
Q 004617 592 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 658 (742)
Q Consensus 592 l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 658 (742)
+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..+..+++.+|+..+..|
T Consensus 522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999999999999999999999999999999999999999988888889999999999887655
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-41 Score=339.57 Aligned_cols=380 Identities=24% Similarity=0.259 Sum_probs=307.6
Q ss_pred cceEEEeecCCCCCCccChhccCCCCCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEE
Q 004617 188 QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILD 267 (742)
Q Consensus 188 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 267 (742)
.-+.|++ +++.+...-+.++.++++|+.+++..|.++ .+|.. .+...+++.|++.+|.|+.+....++.++.|++||
T Consensus 79 ~t~~Ldl-snNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDL-SNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeec-cccccccCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 4556777 677777777778889999999999999887 67764 24566799999999999998888899999999999
Q ss_pred cccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEcccccc
Q 004617 268 ISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSL 347 (742)
Q Consensus 268 l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~ 347 (742)
|+.|.|+ ++|..-|..-.++++|+|+.|+|+.+....|.++.+|.+|.|++|+++ .+|...|+.+++|+.|+|..|+|
T Consensus 156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccce
Confidence 9999998 888877765678999999999999998899999999999999999998 99999998899999999999988
Q ss_pred ccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCC-CCCCCccEEEccC
Q 004617 348 KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSC-FHPLSIEQVHLSK 426 (742)
Q Consensus 348 ~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~~~L~~L~l~~ 426 (742)
.. ...-.|.++++|+.|.|..|.+......+|.++.++++|+|..|++.....+. |.+++|+.|+++.
T Consensus 234 ri-----------ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 234 RI-----------VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred ee-----------ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 74 22446888999999999999998888888999999999999999988766654 4478888886666
Q ss_pred cccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCccccccccc
Q 004617 427 NMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYES 506 (742)
Q Consensus 427 n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 506 (742)
|.+.. ..++...-+++|+.|+|++|+++...+++|..+..|++|.|++|.+.......|..+
T Consensus 303 NaI~r-------------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l----- 364 (873)
T KOG4194|consen 303 NAIQR-------------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL----- 364 (873)
T ss_pred hhhhe-------------eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh-----
Confidence 65543 445556667888888888888887778888888888888888888775555555443
Q ss_pred ccCCCCCcccccccccccCCCcccccccchheecccccccccEEEccCCcCCCCCc---ccccCcCCCCEEEcccccCCC
Q 004617 507 YNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIP---PQIGNLTRIQTLNLSYNNLTG 583 (742)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~ 583 (742)
.+|+.|||++|.+...+. ..|.++++|+.|+|.+|++..
T Consensus 365 --------------------------------------ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 365 --------------------------------------SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred --------------------------------------hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence 378888888888765443 347788888888888888887
Q ss_pred CCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEecCCCccccccc-cccccc
Q 004617 584 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL-EWTAQF 640 (742)
Q Consensus 584 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~ 640 (742)
+...+|.++++|++|||.+|.|..+-|++|..+ .|+.|-+..-.|.|+|. .|+.+|
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHH
Confidence 777888888888888888888888888888887 88888888888888873 444443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-39 Score=329.55 Aligned_cols=394 Identities=23% Similarity=0.230 Sum_probs=342.4
Q ss_pred CCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEEcccCcCcccCCchhhccCCCccEEE
Q 004617 213 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN 292 (742)
Q Consensus 213 ~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~ 292 (742)
.-+.|++++|.+....+.. |.++++|+.+++..|.++. +|.......+++.|+|.+|.|+ .+...-...++.|+.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~-f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEF-FYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHH-HhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 4667999999988555544 5799999999999998875 3445555667999999999998 77776666688999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccCCCccCCcccc
Q 004617 293 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL 372 (742)
Q Consensus 293 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L 372 (742)
|+.|.|+.+....|..-.++++|+|++|+|+ .+..+.|.++.+|..|.|++|+++. ..+..|++++.|
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNritt-----------Lp~r~Fk~L~~L 223 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITT-----------LPQRSFKRLPKL 223 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccc-----------cCHHHhhhcchh
Confidence 9999999887788888889999999999998 8888889899999999999988875 556789999999
Q ss_pred chhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCC-CCCccEEEccCcccccccccccCCcccCCCCChhhh
Q 004617 373 IHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIG 451 (742)
Q Consensus 373 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~ 451 (742)
+.|+|..|++....--+|.++++|+.|.+..|.|....+++|. +.++++|++..|++.. .-..|+.
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-------------vn~g~lf 290 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-------------VNEGWLF 290 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-------------hhccccc
Confidence 9999999999966678899999999999999999999999998 8999999877776653 5567888
Q ss_pred cCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCcccccccccccCCCcccc
Q 004617 452 ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT 531 (742)
Q Consensus 452 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (742)
++++|+.|+|++|.|..+.+.+...+++|++|+|+.|.++..-+..|..++
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~----------------------------- 341 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS----------------------------- 341 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999977777776544
Q ss_pred cccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCc---cccCCCCCCEEECcCCccccc
Q 004617 532 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPS---TFSNLKHIESLDLSYNKLNGK 608 (742)
Q Consensus 532 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~i~~~ 608 (742)
.|++|.|++|.+..+...+|.++++|++|||++|.++..+.+ .|.++++|+.|.+.+|++..+
T Consensus 342 --------------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 342 --------------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred --------------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 899999999999988889999999999999999999877654 688899999999999999988
Q ss_pred CCccccCCCCCCeEecCCCcccccccccccccccCCcccccCCcCCCCCCC-----------------CCCCCCCCCCCc
Q 004617 609 IPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL-----------------PICRSPATMSEA 671 (742)
Q Consensus 609 ~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~-----------------~~C~~~~~~~~~ 671 (742)
...+|.++..|++||+.+|++...-++.|.++ .++++.+..-.++|+|.+ ..|..|+...+.
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~ 486 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQ 486 (873)
T ss_pred chhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccc
Confidence 88899999999999999999999888888887 778888888889999962 169999988877
Q ss_pred cCCCCCC
Q 004617 672 SIGNERD 678 (742)
Q Consensus 672 ~~~~~~~ 678 (742)
.+...+.
T Consensus 487 ~i~svd~ 493 (873)
T KOG4194|consen 487 SIVSVDT 493 (873)
T ss_pred eeEeech
Confidence 5544433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.3e-39 Score=310.32 Aligned_cols=474 Identities=26% Similarity=0.377 Sum_probs=307.1
Q ss_pred cCCCCCCEEeCCCCcCCccccccccCCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCCCcccceeecCCCc
Q 004617 26 SRLNNLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTG 105 (742)
Q Consensus 26 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~ 105 (742)
+.-..+..+++++|.++.+ .+.+.++..|.+|++++|+++ ..| .+++.+..++.++.++|+++
T Consensus 42 W~qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-------------- 104 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-------------- 104 (565)
T ss_pred hhhcchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh--------------
Confidence 3345788899999998844 445778999999999999998 788 78999999999999999887
Q ss_pred ceeccCHhhhcCCCCcCEEEccCCCCCCC-------CCCCEEecCCCccccccCcccccCCCCCcEEEccCCcccccccc
Q 004617 106 FKGTLDIREFDSFNNLEVLDMSYNKIDNL-------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITE 178 (742)
Q Consensus 106 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 178 (742)
.+|. .+..+.++.+++++.|.+..+ ..+..++..+|+++ ..+ ..+..+.++..+++.+|.+.
T Consensus 105 ---~lp~-~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~----- 173 (565)
T KOG0472|consen 105 ---ELPE-QIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLK----- 173 (565)
T ss_pred ---hccH-HHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchh-----
Confidence 5665 666666666777766666542 22333344444333 122 23344444555555544432
Q ss_pred cccCCCCCccceEEEeecCCCCCCccChhccCCCCCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCC
Q 004617 179 SHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIH 258 (742)
Q Consensus 179 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~ 258 (742)
...|..+ .++.|+++|...|.+. .+|+.+ +.+.+|..|++..|++...+ .|.
T Consensus 174 -----------------------~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~~lP--ef~ 225 (565)
T KOG0472|consen 174 -----------------------ALPENHI-AMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIRFLP--EFP 225 (565)
T ss_pred -----------------------hCCHHHH-HHHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhcccccCC--CCC
Confidence 2222222 2566777777666654 566665 56777777777777776433 667
Q ss_pred CCCCcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCc
Q 004617 259 SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ 338 (742)
Q Consensus 259 ~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 338 (742)
++..|++++++.|+|. .+|......++++..||++.|+++ ..|+.+.-+++|+.||+++|.++ .+|.... ++ .|+
T Consensus 226 gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg-nl-hL~ 300 (565)
T KOG0472|consen 226 GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG-NL-HLK 300 (565)
T ss_pred ccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc-cc-eee
Confidence 7777777777777776 677777766777777777777777 45666667777777777777777 6666654 45 677
Q ss_pred EEEccccccccce-ecccccccccCCCccCCccccchhc--CCCCccc---------C----CCCccccCCCCCcEEEcC
Q 004617 339 FLMLSNNSLKEGL-YLTNNSLSGNIPGWLGNLTWLIHII--MPENHLE---------G----PIPVEFCQLYSLQILDIS 402 (742)
Q Consensus 339 ~L~L~~n~~~~~l-~l~~n~~~~~~~~~~~~l~~L~~L~--l~~n~~~---------~----~~~~~~~~l~~L~~L~L~ 402 (742)
.|.+.+|++.++- ++-.+. .. .-|++|. +..-.++ . ........+.+.+.|+++
T Consensus 301 ~L~leGNPlrTiRr~ii~~g----T~------~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 301 FLALEGNPLRTIRREIISKG----TQ------EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred ehhhcCCchHHHHHHHHccc----HH------HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence 7777777766420 000000 00 0011110 0000000 0 001112334566677777
Q ss_pred CccCcccCCCCCCCCC---ccEEEccCcccccccccccCCcccCCCCChhhhcCCCCCE-EEcCCCcCccCCcccccCCC
Q 004617 403 DNNISGSLPSCFHPLS---IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSH-LILGHNNLEGEVPVQLCELN 478 (742)
Q Consensus 403 ~n~i~~~~~~~~~~~~---L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~ 478 (742)
+-+++.++...|.... ....++++|++. .+|..+..+..+.+ +.+++|.+. .+|..++.++
T Consensus 371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~--------------elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~ 435 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC--------------ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQ 435 (565)
T ss_pred ccccccCCHHHHHHhhhcceEEEecccchHh--------------hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhh
Confidence 7777666655555322 566666666654 55555555544443 344444443 6777778888
Q ss_pred CCCEEEcCCCeeeecCCCCcccccccccccCCCCCcccccccccccCCCcccccccchheecccccccccEEEccCCcCC
Q 004617 479 QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI 558 (742)
Q Consensus 479 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 558 (742)
+|..|++++|.+. .+|..+..+ ..|+.|+++.|++.
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~l-------------------------------------------v~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSL-------------------------------------------VRLQTLNLSFNRFR 471 (565)
T ss_pred cceeeecccchhh-hcchhhhhh-------------------------------------------hhhheecccccccc
Confidence 8888888887775 555555443 26888888888776
Q ss_pred CCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEecCCCcccc
Q 004617 559 GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 631 (742)
Q Consensus 559 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~ 631 (742)
..|+....+..++.+-.++|++....++.+.++.+|..||+.+|.+. .+|..++++++|++|+++||||..
T Consensus 472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence 57777777777888888888898888888889999999999999998 778888999999999999999984
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.2e-35 Score=284.68 Aligned_cols=485 Identities=22% Similarity=0.297 Sum_probs=331.9
Q ss_pred hcCCCCCCCEEECCCCCCCC-------CcccceeecCCCcceeccCHhhhcCCCCcCEEEccCCCCCCCCCCCEEecCCC
Q 004617 73 EFDSLRDLEELDIGENKIDK-------FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDN 145 (742)
Q Consensus 73 ~~~~l~~L~~L~Ls~n~l~~-------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~l~~n 145 (742)
.++.-.-|+.+++++|.+.. +..+.++++++|..+ .+|+ +.+.+..++.++.|+|++..
T Consensus 40 ~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls~------------ 105 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLSE------------ 105 (565)
T ss_pred hhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHhh------------
Confidence 34444455555566555431 222223333333333 5555 55666666666666666543
Q ss_pred ccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCccceEEEeecCCCCCCccChhccCCCCCCEEEccCCCCC
Q 004617 146 HFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMN 225 (742)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 225 (742)
.+ .......+++.++++.|.+. .+++.++.+..++.++..+|.++
T Consensus 106 -----lp-~~i~s~~~l~~l~~s~n~~~-----------------------------el~~~i~~~~~l~dl~~~~N~i~ 150 (565)
T KOG0472|consen 106 -----LP-EQIGSLISLVKLDCSSNELK-----------------------------ELPDSIGRLLDLEDLDATNNQIS 150 (565)
T ss_pred -----cc-HHHhhhhhhhhhhcccccee-----------------------------ecCchHHHHhhhhhhhccccccc
Confidence 22 23444455555555554432 34455667778888888888887
Q ss_pred CCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCcc
Q 004617 226 GEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS 305 (742)
Q Consensus 226 ~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 305 (742)
..|..+ .++.++..+++.+|.+....+..+. ++.|+.||..+|-+. .+|+.+.. +.+|+.|++++|+|. ..| .
T Consensus 151 -slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-e 223 (565)
T KOG0472|consen 151 -SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-E 223 (565)
T ss_pred -cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-C
Confidence 456554 5888889999999998877766665 899999999999997 89998876 789999999999998 455 7
Q ss_pred ccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccCCCccCCccccchhcCCCCcccCC
Q 004617 306 FGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP 385 (742)
Q Consensus 306 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 385 (742)
|.++..|.++.++.|.+. .+|.+..++++++.+||+..|++++ .|..+.-+.+|.+||+++|.++ .
T Consensus 224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke------------~Pde~clLrsL~rLDlSNN~is-~ 289 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE------------VPDEICLLRSLERLDLSNNDIS-S 289 (565)
T ss_pred CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc------------CchHHHHhhhhhhhcccCCccc-c
Confidence 999999999999999998 9999999899999999999999885 7888888899999999999998 5
Q ss_pred CCccccCCCCCcEEEcCCccCcccCCCCCC------CCCccEEEccCccccccccccc-CCcccCCCCChhhhcCCCCCE
Q 004617 386 IPVEFCQLYSLQILDISDNNISGSLPSCFH------PLSIEQVHLSKNMLHRQLKRDL-SYNLLNGSIPDWIGELSQLSH 458 (742)
Q Consensus 386 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------~~~L~~L~l~~n~l~~~~~~~l-~~n~l~~~~~~~~~~l~~L~~ 458 (742)
.|..++++ .|+.|-+.||.+..+-..... +..|+.- +.+-.+...-...- ......+..| .....-+.+.
T Consensus 290 Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~-~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tki 366 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSK-IKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKI 366 (565)
T ss_pred CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHh-hccCCCCCCcccccccCCCCCCccc-chhhhhhhhh
Confidence 67788888 899999999987643222221 1111110 00000000000000 0000011111 1223457788
Q ss_pred EEcCCCcCccCCcccccCCC--CCCEEEcCCCeeeecCCCCcccccccccccCCCCCcccccccccccCCCcccccccch
Q 004617 459 LILGHNNLEGEVPVQLCELN--QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA 536 (742)
Q Consensus 459 L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (742)
|++++-+++.+..+.|..-. -...++++.|++. .+|..+..++-... ......+.++
T Consensus 367 L~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT--------------------~l~lsnn~is 425 (565)
T KOG0472|consen 367 LDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT--------------------DLVLSNNKIS 425 (565)
T ss_pred hcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH--------------------HHHhhcCccc
Confidence 88888888866666665433 2677888888876 45544433220000 0111222233
Q ss_pred heec-ccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccccC
Q 004617 537 YIYQ-GKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 615 (742)
Q Consensus 537 ~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 615 (742)
+++. ...++.|..|+|++|-+. .+|..+..+..|+.|++++|++. ..|.....+..++.+-.++|++....|+.+..
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 3322 234678999999999887 67888889999999999999998 66777777888988888999999888888999
Q ss_pred CCCCCeEecCCCcccccccccccccccCCcccccCCcCC
Q 004617 616 LKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFL 654 (742)
Q Consensus 616 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~ 654 (742)
+.+|..||+.+|.+... |..++.+.++..+.+.|||+-
T Consensus 504 m~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence 99999999999999875 445788999999999999985
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-33 Score=300.47 Aligned_cols=472 Identities=25% Similarity=0.278 Sum_probs=295.9
Q ss_pred CCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCC-------CcccceeecCCCcceeccCHhhhcCCCCcCEEEcc
Q 004617 55 LRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK-------FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMS 127 (742)
Q Consensus 55 L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~-------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls 127 (742)
+..|++..|.+. .-|.+...+..+|+.||+++|.+.. +++|+.|.++.|.+. ..|. ...++++|+++.|.
T Consensus 23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCch-hhhhhhcchhheec
Confidence 444444444433 2232333333334444444444332 234444444455444 5555 66677777777777
Q ss_pred CCCCCC-------CCCCCEEecCCCccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCccceEEEeecCCCC
Q 004617 128 YNKIDN-------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGD 200 (742)
Q Consensus 128 ~n~l~~-------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 200 (742)
+|.+.. +++|++|+++.|++. .+| ..+..+..++.+..++|..... .+...++++++ ..+.+
T Consensus 100 ~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~--------lg~~~ik~~~l-~~n~l 168 (1081)
T KOG0618|consen 100 NNRLQSLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQR--------LGQTSIKKLDL-RLNVL 168 (1081)
T ss_pred cchhhcCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhh--------hccccchhhhh-hhhhc
Confidence 776655 446667777777664 333 3455566666666666621111 11223666666 55666
Q ss_pred CCccChhccCCCCCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEEcccCcCcccCCch
Q 004617 201 GVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVE 280 (742)
Q Consensus 201 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~ 280 (742)
.+.++..+..+++ .+++++|.+. .. . ..++.+|+.+....|.+..... .-++++.|+.++|.++ .+...
T Consensus 169 ~~~~~~~i~~l~~--~ldLr~N~~~-~~--d-ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~-~~~~~ 237 (1081)
T KOG0618|consen 169 GGSFLIDIYNLTH--QLDLRYNEME-VL--D-LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLT-TLDVH 237 (1081)
T ss_pred ccchhcchhhhhe--eeecccchhh-hh--h-hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcce-eeccc
Confidence 6666665555555 6888887765 11 1 2467777777777776654322 2356777788888776 32222
Q ss_pred hhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccc
Q 004617 281 IGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 360 (742)
Q Consensus 281 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~ 360 (742)
.. ..+|++++++.|+++. +|.+...+.+|+.++..+|+++ .+|..++ ..++|+.|.+..|.+..
T Consensus 238 p~--p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~y----------- 301 (1081)
T KOG0618|consen 238 PV--PLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELEY----------- 301 (1081)
T ss_pred cc--cccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhhh-----------
Confidence 21 2477888888887774 4577777888888888888886 7777776 57777777777777664
Q ss_pred cCCCccCCccccchhcCCCCcccCCCCccccCCCC-CcEEEcCCccCcccCCC-CCCCCCccEEEccCcccccccccccC
Q 004617 361 NIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS-LQILDISDNNISGSLPS-CFHPLSIEQVHLSKNMLHRQLKRDLS 438 (742)
Q Consensus 361 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~ 438 (742)
+|....++++|++|+|..|.+....+..|.-... |+.|+.+.|.+...... ......|+.|.+.+|.++.
T Consensus 302 -ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd------- 373 (1081)
T KOG0618|consen 302 -IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD------- 373 (1081)
T ss_pred -CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc-------
Confidence 5666667777788888777777444433443333 66677776666543321 1124566777666665553
Q ss_pred CcccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCccccc
Q 004617 439 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFE 518 (742)
Q Consensus 439 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (742)
..-..+.+.++|+.|+|++|++.......+.++..|++|+|++|.++ .+|.+...+
T Consensus 374 ------~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~----------------- 429 (1081)
T KOG0618|consen 374 ------SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL----------------- 429 (1081)
T ss_pred ------cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh-----------------
Confidence 44445667788888999998888666667888888888888888887 444555443
Q ss_pred ccccccCCCcccccccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEE
Q 004617 519 ISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESL 598 (742)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 598 (742)
+.|++|...+|++. ..| .+..++.|+.+|+|.|+++...-..-...++|++|
T Consensus 430 --------------------------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyL 481 (1081)
T KOG0618|consen 430 --------------------------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYL 481 (1081)
T ss_pred --------------------------hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCccccee
Confidence 37888888888887 344 77788888888888888875532222223788888
Q ss_pred ECcCCcccccCCccccCCCCCCeEecCCC
Q 004617 599 DLSYNKLNGKIPHQLVELKTLEVFSVAYN 627 (742)
Q Consensus 599 ~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 627 (742)
|+++|.-.......+..+.+++..++.-|
T Consensus 482 dlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 482 DLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eccCCcccccchhhhHHhhhhhheecccC
Confidence 88888754456666666777777776666
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.3e-32 Score=278.17 Aligned_cols=360 Identities=26% Similarity=0.402 Sum_probs=242.8
Q ss_pred ceEEEeecCCCCC-CccChhccCCCCCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEE
Q 004617 189 LQSLSLSSSYGDG-VTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILD 267 (742)
Q Consensus 189 L~~L~L~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 267 (742)
.+..++ +++.++ +..|....+++++++|.+....+. .+|..+ +.+.+|++|.+.+|++..+ .+.++.++.|+.++
T Consensus 9 VrGvDf-sgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 9 VRGVDF-SGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVI 84 (1255)
T ss_pred eecccc-cCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHh
Confidence 344555 444444 557777888888888888877765 677775 6888888888888887653 35667788888888
Q ss_pred cccCcCcc-cCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccc
Q 004617 268 ISNNNIRG-HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS 346 (742)
Q Consensus 268 l~~n~i~~-~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 346 (742)
+.+|++.. -||.++|. +..|+.|||++|++. ..|..+..-+++-+|+||+|+|. +||..+|.++..|-.||||+|+
T Consensus 85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 88888752 37888876 778888888888887 46777777788888888888887 8888888888888888888888
Q ss_pred cccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCc-ccCCCCCC-CCCccEEEc
Q 004617 347 LKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS-GSLPSCFH-PLSIEQVHL 424 (742)
Q Consensus 347 ~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-~~~L~~L~l 424 (742)
+.. +|..+..+..|++|+|++|.+....-..+-.+++|++|.+++.+-+ ..+|.... +.+|..+++
T Consensus 162 Le~------------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 162 LEM------------LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hhh------------cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 764 6777778888888888888776544444555667777777765433 12233222 555666655
Q ss_pred cCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCccccccc
Q 004617 425 SKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLY 504 (742)
Q Consensus 425 ~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 504 (742)
+.|.+. ..|.++..+++|+.|+||+|+|+.. .-......+|++|+++.|+++ ..|.++..+
T Consensus 230 S~N~Lp--------------~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL--- 290 (1255)
T KOG0444|consen 230 SENNLP--------------IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKL--- 290 (1255)
T ss_pred cccCCC--------------cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhh---
Confidence 555443 5666666666677777777666632 223444556666666666665 455554442
Q ss_pred ccccCCCCCcccccccccccCCCcccccccchheecccccccccEEEccCCcCCCC-CcccccCcCCCCEEEcccccCCC
Q 004617 505 ESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH-IPPQIGNLTRIQTLNLSYNNLTG 583 (742)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~ 583 (742)
+.|+.|++.+|++.-. +|..++.+..|+++..++|.+.
T Consensus 291 ----------------------------------------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE- 329 (1255)
T KOG0444|consen 291 ----------------------------------------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE- 329 (1255)
T ss_pred ----------------------------------------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-
Confidence 2566666666665422 4555666666666666666665
Q ss_pred CCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEecCCCc
Q 004617 584 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 628 (742)
Q Consensus 584 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~ 628 (742)
..|+.+..+..|+.|.|+.|++. .+|+++.-++.|+.||+..||
T Consensus 330 lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 330 LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 56666666666666666666665 566666666666666666664
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=6.1e-32 Score=275.11 Aligned_cols=372 Identities=28% Similarity=0.386 Sum_probs=254.5
Q ss_pred CCCCCEEeCCCCcCC-ccccccccCCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCCCcccceeecCCCcc
Q 004617 28 LNNLKMLNLSGNSFN-NTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGF 106 (742)
Q Consensus 28 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~~ 106 (742)
++-.+-.|+++|.++ .-.|.....++++++|.|...++. .+| +.++.+.+|++|.+++|++.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~--------------- 68 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLI--------------- 68 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhH---------------
Confidence 445556666666666 345666666666666666666665 555 56666666666666655554
Q ss_pred eeccCHhhhcCCCCcCEEEccCCCCCCCCCCCEEecCCCccccccCcccccCCCCCcEEEccCCcccccccccccCCCCC
Q 004617 107 KGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPN 186 (742)
Q Consensus 107 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 186 (742)
.+-. .+..++.|+.+++..|++..
T Consensus 69 --~vhG-ELs~Lp~LRsv~~R~N~LKn----------------------------------------------------- 92 (1255)
T KOG0444|consen 69 --SVHG-ELSDLPRLRSVIVRDNNLKN----------------------------------------------------- 92 (1255)
T ss_pred --hhhh-hhccchhhHHHhhhcccccc-----------------------------------------------------
Confidence 2222 34445555555555444431
Q ss_pred ccceEEEeecCCCCCCccChhccCCCCCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEE
Q 004617 187 FQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGIL 266 (742)
Q Consensus 187 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 266 (742)
..+|..++.+..|+.||+++|.+. ..|.. +..-+++-+|
T Consensus 93 ---------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~-------------------------LE~AKn~iVL 131 (1255)
T KOG0444|consen 93 ---------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTN-------------------------LEYAKNSIVL 131 (1255)
T ss_pred ---------------CCCCchhcccccceeeecchhhhh-hcchh-------------------------hhhhcCcEEE
Confidence 234555666677777777777765 34433 2234556678
Q ss_pred EcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccc
Q 004617 267 DISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS 346 (742)
Q Consensus 267 ~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 346 (742)
++++|+|. .||..+|..+..|-.|||++|++.. +|...+.+..|++|+|++|.+. .+.-...-.+++|++|.+++..
T Consensus 132 NLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 132 NLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhccccc
Confidence 88888887 8888888878888888888888874 5666778888888888888764 2222222246677777777665
Q ss_pred cccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCCCCCccEEEccC
Q 004617 347 LKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK 426 (742)
Q Consensus 347 ~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~ 426 (742)
-+- ..+|..+.++.+|..+|++.|.+. .+|+++-.+++|+.|+||+|+|+...
T Consensus 209 RTl----------~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~---------------- 261 (1255)
T KOG0444|consen 209 RTL----------DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELN---------------- 261 (1255)
T ss_pred chh----------hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeee----------------
Confidence 332 246778888889999999998888 78888888999999999998887321
Q ss_pred cccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeee-cCCCCcccccccc
Q 004617 427 NMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHG-SIPPCFDNTTLYE 505 (742)
Q Consensus 427 n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~ 505 (742)
-..+...+|++|+||.|+++ ..|.+++.++.|+.|.+.+|+++- .+|..++.+
T Consensus 262 ---------------------~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL---- 315 (1255)
T KOG0444|consen 262 ---------------------MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL---- 315 (1255)
T ss_pred ---------------------ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh----
Confidence 11233467788888888887 577778888888888888887652 244444442
Q ss_pred cccCCCCCcccccccccccCCCcccccccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCC
Q 004617 506 SYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 585 (742)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 585 (742)
..|+++...+|.+. ..|+.++.+..|+.|.|++|++- ..
T Consensus 316 ---------------------------------------~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TL 354 (1255)
T KOG0444|consen 316 ---------------------------------------IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TL 354 (1255)
T ss_pred ---------------------------------------hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ec
Confidence 36777777787776 77888888899999999999887 45
Q ss_pred CccccCCCCCCEEECcCCcccccCC
Q 004617 586 PSTFSNLKHIESLDLSYNKLNGKIP 610 (742)
Q Consensus 586 ~~~~~~l~~L~~L~Ls~N~i~~~~~ 610 (742)
|+++.-++.|+.||+..|+-....|
T Consensus 355 PeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCccCCC
Confidence 7888888889999998887763333
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-30 Score=278.63 Aligned_cols=471 Identities=24% Similarity=0.269 Sum_probs=351.4
Q ss_pred EeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCC--------CcccceeecCCCcceeccCHhhhcCCCCcCEEEccCC
Q 004617 58 LNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK--------FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYN 129 (742)
Q Consensus 58 L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~--------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 129 (742)
++++.+.+. .|| ..+..-..++.|+++.|-+-. ..+|+.|++++|.++ ..|. .+..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~-~ip-~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLE-LIP-EQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCc-ccc-hhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchh
Confidence 567777776 788 445444559999999997654 446888999998887 6676 6778888899999888
Q ss_pred CCCC-------CCCCCEEecCCCccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCccceEEEeecCCCCCC
Q 004617 130 KIDN-------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGV 202 (742)
Q Consensus 130 ~l~~-------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 202 (742)
.+.. +.+|+++.|.+|.+. . -+..+..+.+|..|+++.|.+....... ...+..+.+.. +++....
T Consensus 79 ~i~~vp~s~~~~~~l~~lnL~~n~l~-~-lP~~~~~lknl~~LdlS~N~f~~~Pl~i----~~lt~~~~~~~-s~N~~~~ 151 (1081)
T KOG0618|consen 79 YIRSVPSSCSNMRNLQYLNLKNNRLQ-S-LPASISELKNLQYLDLSFNHFGPIPLVI----EVLTAEEELAA-SNNEKIQ 151 (1081)
T ss_pred hHhhCchhhhhhhcchhheeccchhh-c-CchhHHhhhcccccccchhccCCCchhH----HhhhHHHHHhh-hcchhhh
Confidence 7765 667888888888765 2 2356777888888888888765432211 12223344444 2221111
Q ss_pred ccChhccCCCCCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEEcccCcCcccCCchhh
Q 004617 203 TFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIG 282 (742)
Q Consensus 203 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~ 282 (742)
.. +. ..++.+++..+.+.+.++... .++.. .|++++|.+. ...+..++.|+.+....|++. .+..
T Consensus 152 ~l----g~-~~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~--- 216 (1081)
T KOG0618|consen 152 RL----GQ-TSIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI--- 216 (1081)
T ss_pred hh----cc-ccchhhhhhhhhcccchhcch-hhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe---
Confidence 11 11 127788888888887777664 34444 6999999887 235567888999999999887 3332
Q ss_pred ccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccC
Q 004617 283 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNI 362 (742)
Q Consensus 283 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~ 362 (742)
.-++++.|+.+.|.++...+. + .-.+|+.+++++|+++ .+|..+ ..+.+|+.+++.+|.+.. .
T Consensus 217 -~g~~l~~L~a~~n~l~~~~~~-p-~p~nl~~~dis~n~l~-~lp~wi-~~~~nle~l~~n~N~l~~------------l 279 (1081)
T KOG0618|consen 217 -SGPSLTALYADHNPLTTLDVH-P-VPLNLQYLDISHNNLS-NLPEWI-GACANLEALNANHNRLVA------------L 279 (1081)
T ss_pred -cCcchheeeeccCcceeeccc-c-ccccceeeecchhhhh-cchHHH-HhcccceEecccchhHHh------------h
Confidence 246999999999999854332 2 3468999999999998 899544 589999999999998864 6
Q ss_pred CCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCC--CCCccEEEccCcccccccccccCCc
Q 004617 363 PGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH--PLSIEQVHLSKNMLHRQLKRDLSYN 440 (742)
Q Consensus 363 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~n 440 (742)
|..+....+|+.|....|.+. .+|....++..|++|+|..|++....+..+. ..+++.+..+.|++....
T Consensus 280 p~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp------- 351 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP------- 351 (1081)
T ss_pred HHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-------
Confidence 778888999999999999998 5666778899999999999999877776655 345778877777665311
Q ss_pred ccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCccccccc
Q 004617 441 LLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEIS 520 (742)
Q Consensus 441 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (742)
.-.=...+.|+.|.+.+|.++...-..+.++..|+.|+|++|.+.......+.+
T Consensus 352 ------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k-------------------- 405 (1081)
T KOG0618|consen 352 ------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK-------------------- 405 (1081)
T ss_pred ------cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc--------------------
Confidence 001122578999999999999877778999999999999999997444445544
Q ss_pred ccccCCCcccccccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEEC
Q 004617 521 FFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDL 600 (742)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 600 (742)
+..|+.|+||+|+++ .+|..+..++.|++|...+|++... | .+..+++|+.+|+
T Consensus 406 -----------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 406 -----------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDL 459 (1081)
T ss_pred -----------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEec
Confidence 347999999999998 5678899999999999999999944 4 7888999999999
Q ss_pred cCCcccccCCccccCCCCCCeEecCCCcccc
Q 004617 601 SYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 631 (742)
Q Consensus 601 s~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~ 631 (742)
+.|+++...-..-...++|++||++||....
T Consensus 460 S~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred ccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 9999986443333444899999999998644
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-26 Score=224.93 Aligned_cols=310 Identities=22% Similarity=0.234 Sum_probs=184.0
Q ss_pred CCcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccc-cccCCCCchhhhhcCCCCcE
Q 004617 261 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSN-NQLTGEIPEHLAVGCVNLQF 339 (742)
Q Consensus 261 ~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~ 339 (742)
+....++|..|+|+ .||+..|..+++|+.|||++|.|+.+.|++|.+++++.+|-+.+ |+|+ .+|+.+|.++..|+.
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 34455566666665 56666666566666666666666666666666666655555544 5555 666666655555555
Q ss_pred EEccccccccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCCCCCc
Q 004617 340 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI 419 (742)
Q Consensus 340 L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L 419 (742)
|.+.-|++.. +..+.|..++++..|.+-+|.+..+...+|..+..++.+.+..|.+...-. ++.+
T Consensus 145 LllNan~i~C-----------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn----L~wl 209 (498)
T KOG4237|consen 145 LLLNANHINC-----------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN----LPWL 209 (498)
T ss_pred HhcChhhhcc-----------hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc----cchh
Confidence 5554444332 233444555555555555555443333345555555555544443210000 0000
Q ss_pred cEEEccCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccC-CCCCCEEEcCCCeeeecCC-CC
Q 004617 420 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNSLHGSIP-PC 497 (742)
Q Consensus 420 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~-~~ 497 (742)
.+ ++. ..|..+++..-..-..+.+.++..+.+..|.- +.++..--.+.+...+..| .+
T Consensus 210 a~--------------~~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c 269 (498)
T KOG4237|consen 210 AD--------------DLA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKC 269 (498)
T ss_pred hh--------------HHh------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHH
Confidence 00 000 11122333333333334444444333333321 1111111111221222222 23
Q ss_pred cccccccccccCCCCCcccccccccccCCCcccccccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcc
Q 004617 498 FDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLS 577 (742)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 577 (742)
|.. +++|+.|+|++|+++++.+.+|.++..+++|.|.
T Consensus 270 f~~-------------------------------------------L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 270 FKK-------------------------------------------LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred Hhh-------------------------------------------cccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 332 5689999999999999999999999999999999
Q ss_pred cccCCCCCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEecCCCcccccc-cccccccccCCcccccCCc
Q 004617 578 YNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI-LEWTAQFATFNKSSYEGNT 652 (742)
Q Consensus 578 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~~n~ 652 (742)
.|++.......|.++..|+.|+|.+|+|+..-|.+|..+.+|..|++-.|||.|.| ..|+..|..-.. ..+||
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--~~~~~ 380 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS--VVGNP 380 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC--CCCCC
Confidence 99999888889999999999999999999999999999999999999999999999 567766644333 45555
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=2.5e-26 Score=223.02 Aligned_cols=291 Identities=21% Similarity=0.222 Sum_probs=186.9
Q ss_pred CCCEEeCCCCcCCccccccccCCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCC-CCCCCCcccceeecCCCccee
Q 004617 30 NLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGE-NKIDKFVVSKELYLDDTGFKG 108 (742)
Q Consensus 30 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~-n~l~~l~~L~~L~l~~~~~~~ 108 (742)
.-+.++|..|.|+.+.+++|+.+++||.||||+|.|+ .|.+++|.++++|.+|-+.+ |+|+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~----------------- 129 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT----------------- 129 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-----------------
Confidence 4556788888888888888888888888888888887 67778888888876665554 7776
Q ss_pred ccCHhhhcCCCCcCEEEccCCCCCCCCCCCEEecCCCccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCcc
Q 004617 109 TLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQ 188 (742)
Q Consensus 109 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 188 (742)
.+|...|+++.+|+.|.+.-|++.. +..+.|..++++..|.+.+|.+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~C-----------------ir~~al~dL~~l~lLslyDn~~---------------- 176 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINC-----------------IRQDALRDLPSLSLLSLYDNKI---------------- 176 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcc-----------------hhHHHHHHhhhcchhcccchhh----------------
Confidence 6777788888888877777766652 2223344444444443333322
Q ss_pred ceEEEeecCCCCCCccChhccCCCCCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEEc
Q 004617 189 LQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDI 268 (742)
Q Consensus 189 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 268 (742)
. .++...+..+..++++.+..|.+.- ..+++.+.. ++
T Consensus 177 ------------------------------------q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-~~ 213 (498)
T KOG4237|consen 177 ------------------------------------Q-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-DL 213 (498)
T ss_pred ------------------------------------h-hhccccccchhccchHhhhcCcccc-----ccccchhhh-HH
Confidence 1 1111112344445555555444211 111122111 11
Q ss_pred ccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCC-CCCCEEEccccccCCCCchhhhhcCCCCcEEEcccccc
Q 004617 269 SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNM-KFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSL 347 (742)
Q Consensus 269 ~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~ 347 (742)
..+.+. +.+..-..-..+.+.++..+-+..|.-. .++..=-.+.+...+..|...|.++++|+.|+|++|.+
T Consensus 214 a~~~ie-------tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 214 AMNPIE-------TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred hhchhh-------cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 111111 1112223333344555554444444322 12211122233333477888899999999999888887
Q ss_pred ccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCC-CCCccEEEccC
Q 004617 348 KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSK 426 (742)
Q Consensus 348 ~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~~~L~~L~l~~ 426 (742)
+. +.+.+|.+...+++|.|..|++..+....|.++..|+.|+|++|+|+...+++|. ..+|.+|.+-.
T Consensus 287 ~~-----------i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 287 TR-----------IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred ch-----------hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 75 6788899999999999999999988888999999999999999999999999998 78999999988
Q ss_pred cccccc
Q 004617 427 NMLHRQ 432 (742)
Q Consensus 427 n~l~~~ 432 (742)
|++...
T Consensus 356 Np~~Cn 361 (498)
T KOG4237|consen 356 NPFNCN 361 (498)
T ss_pred CcccCc
Confidence 887653
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.9e-20 Score=222.94 Aligned_cols=347 Identities=19% Similarity=0.177 Sum_probs=204.8
Q ss_pred hhccCCCCCCEEEccCCCC------CCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEEcccCcCcccCCc
Q 004617 206 KFLYHQHDLEYVRLSHIKM------NGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPV 279 (742)
Q Consensus 206 ~~l~~~~~L~~L~l~~~~~------~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~ 279 (742)
..+..+++|+.|.+..+.. ...+|..+..-..+|+.|.+.++.+... |..+ .+.+|+.|++.+|.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCcccc-cccc
Confidence 3455666777776654421 1223443322234567777766665433 3333 3566777777777765 5555
Q ss_pred hhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceeccccccc
Q 004617 280 EIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLS 359 (742)
Q Consensus 280 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~ 359 (742)
.+.. +++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+. .+++|+.|++++|...+
T Consensus 629 ~~~~-l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~---------- 695 (1153)
T PLN03210 629 GVHS-LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLE---------- 695 (1153)
T ss_pred cccc-CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcC----------
Confidence 5433 5677777776654333444 355667777777776654446665543 56677777766654322
Q ss_pred ccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCCCCCccEEEccCcccccccccccCC
Q 004617 360 GNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSY 439 (742)
Q Consensus 360 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 439 (742)
.+|..+ ++++|+.|++++|......|.. ..+|+.|++++|.+.. .|..+.+.+|++|.+.++......
T Consensus 696 -~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~------ 763 (1153)
T PLN03210 696 -ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLW------ 763 (1153)
T ss_pred -ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhcc------
Confidence 233333 5666777777766544444432 3466677777776653 333344566666666543321100
Q ss_pred cccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCcccccc
Q 004617 440 NLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEI 519 (742)
Q Consensus 440 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (742)
+.+....+..+...++|+.|++++|.....+|..++++++|+.|++++|...+.+|... +
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~------------------- 823 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N------------------- 823 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-------------------
Confidence 00111112223334678888888887776778888888888888888876444445432 1
Q ss_pred cccccCCCcccccccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEE
Q 004617 520 SFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLD 599 (742)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 599 (742)
+++|+.|++++|......|.. .++|+.|+|++|.++ ..|..+..+++|+.|+
T Consensus 824 ------------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 824 ------------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLD 875 (1153)
T ss_pred ------------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence 346788888877544344432 356778888888877 3466777788888888
Q ss_pred CcCCcccccCCccccCCCCCCeEecCCCc
Q 004617 600 LSYNKLNGKIPHQLVELKTLEVFSVAYNN 628 (742)
Q Consensus 600 Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~ 628 (742)
+++|+-...+|..+..+++|+.+++++|+
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCc
Confidence 88754444566667777788888877774
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.5e-20 Score=223.48 Aligned_cols=336 Identities=19% Similarity=0.211 Sum_probs=233.0
Q ss_pred hHHhcCCCCCEEecCCccc------cccCccCCCCC-CCcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCC
Q 004617 231 WLLENNTKLATLFLVNDSL------AGPFWLPIHSH-KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIP 303 (742)
Q Consensus 231 ~l~~~l~~L~~L~l~~~~~------~~~~~~~~~~l-~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~ 303 (742)
..|..+.+|+.|.+..+.. ....|..+..+ .+|+.|++.++.+. .+|..+. ..+|+.|++++|++.. ++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~~-L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLEK-LW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCccccc-cc
Confidence 3457788888888865432 22334445444 46888888888887 7787663 4688888888888773 56
Q ss_pred ccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccCCCccCCccccchhcCCCCccc
Q 004617 304 SSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE 383 (742)
Q Consensus 304 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 383 (742)
..+..+++|+.|+++++...+.+|. +..+++|++|++++|.... .+|..+..+++|+.|++++|...
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~-----------~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV-----------ELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc-----------ccchhhhccCCCCEEeCCCCCCc
Confidence 6677788888888887754446664 3467888888887775432 45777888888888888887655
Q ss_pred CCCCccccCCCCCcEEEcCCccCcccCCCCCCCCCccEEEccCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCC
Q 004617 384 GPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGH 463 (742)
Q Consensus 384 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 463 (742)
..+|..+ ++++|+.|++++|......+.. ..+|++|++++|.+. .+|..+ .+++|+.|.+.+
T Consensus 695 ~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~--------------~lP~~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 695 EILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE--------------EFPSNL-RLENLDELILCE 756 (1153)
T ss_pred CccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc--------------cccccc-cccccccccccc
Confidence 5566554 6788888888888655444432 457788877777654 334333 467788888876
Q ss_pred CcCc-------cCCcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCcccccccccccCCCcccccccch
Q 004617 464 NNLE-------GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA 536 (742)
Q Consensus 464 n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (742)
+... ...+..+...++|+.|++++|+..+.+|..+.++
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L----------------------------------- 801 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL----------------------------------- 801 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCC-----------------------------------
Confidence 4322 1122223345789999999988777777777664
Q ss_pred heecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccccCC
Q 004617 537 YIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 616 (742)
Q Consensus 537 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l 616 (742)
++|+.|++++|...+.+|... ++++|+.|+|++|......|.. .++|+.|++++|.+. .+|..+..+
T Consensus 802 --------~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l 868 (1153)
T PLN03210 802 --------HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKF 868 (1153)
T ss_pred --------CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcC
Confidence 489999999986555666655 7899999999998655444443 368999999999998 788899999
Q ss_pred CCCCeEecCCCcccccccccccccccCCccccc
Q 004617 617 KTLEVFSVAYNNLSGEILEWTAQFATFNKSSYE 649 (742)
Q Consensus 617 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 649 (742)
++|+.|++++|+--..+|.....+..+..+.+.
T Consensus 869 ~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred CCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 999999999964444455444444444444433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.1e-20 Score=207.40 Aligned_cols=263 Identities=27% Similarity=0.331 Sum_probs=163.8
Q ss_pred cCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEc
Q 004617 263 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 342 (742)
Q Consensus 263 L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 342 (742)
-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|. ..++|+.|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cccccceeec
Confidence 345666666665 5665543 256666666666663 332 2456666666666666 5553 2345666666
Q ss_pred cccccccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCCCCCccEE
Q 004617 343 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV 422 (742)
Q Consensus 343 ~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L 422 (742)
++|.+.. +|.. .++|+.|++++|++.. +|. ..++|+.|++++|++.+... .+..|+.|
T Consensus 270 s~N~L~~------------Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L 327 (788)
T PRK15387 270 FSNPLTH------------LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPA---LPSELCKL 327 (788)
T ss_pred cCCchhh------------hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCC---Cccccccc
Confidence 6665542 2221 1345566666666653 232 23567777777777765322 13456666
Q ss_pred EccCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCccccc
Q 004617 423 HLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT 502 (742)
Q Consensus 423 ~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 502 (742)
.+++|.+.. +|.. ..+|+.|+|++|++++. |.. ..+|+.|++++|.+.+ +|..
T Consensus 328 ~Ls~N~L~~--------------LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l----- 380 (788)
T PRK15387 328 WAYNNQLTS--------------LPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL----- 380 (788)
T ss_pred ccccCcccc--------------cccc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc-----
Confidence 666665542 2211 14678888888888753 322 3467778888888763 3321
Q ss_pred ccccccCCCCCcccccccccccCCCcccccccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCC
Q 004617 503 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT 582 (742)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 582 (742)
+..|+.|++++|++.+. |.. .++|+.|++++|+++
T Consensus 381 -----------------------------------------~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 381 -----------------------------------------PSGLKELIVSGNRLTSL-PVL---PSELKELMVSGNRLT 415 (788)
T ss_pred -----------------------------------------ccccceEEecCCcccCC-CCc---ccCCCEEEccCCcCC
Confidence 22578888888888753 332 357888999999888
Q ss_pred CCCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEecCCCcccccccccc
Q 004617 583 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWT 637 (742)
Q Consensus 583 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 637 (742)
++ |.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 416 sI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 416 SL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 64 433 246788899999988 678888888899999999999988766544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=3.2e-19 Score=198.16 Aligned_cols=63 Identities=25% Similarity=0.362 Sum_probs=43.7
Q ss_pred cccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccc
Q 004617 546 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 613 (742)
Q Consensus 546 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 613 (742)
+|+.|++++|.+.+ +|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|++++..+..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 57777777777764 3432 245677788888877 446667777788888888888877666555
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=4.6e-18 Score=190.37 Aligned_cols=119 Identities=25% Similarity=0.327 Sum_probs=63.5
Q ss_pred CcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEE
Q 004617 262 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 341 (742)
Q Consensus 262 ~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 341 (742)
+...|+++++.++ .+|..+. +.++.|++++|+++. +|..+. ++|++|++++|.++ .+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 3455666666665 5665442 356666666666663 333322 35666666666665 5665432 2566666
Q ss_pred ccccccccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcc
Q 004617 342 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG 408 (742)
Q Consensus 342 L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 408 (742)
+++|.+.. +|..+. .+|+.|++++|.+.. +|..+. .+|+.|++++|++++
T Consensus 248 Ls~N~L~~------------LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 248 LSINRITE------------LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred CcCCccCc------------CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc
Confidence 66655442 232222 245555555555552 333332 356666666666553
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=1.1e-17 Score=187.26 Aligned_cols=160 Identities=23% Similarity=0.425 Sum_probs=90.6
Q ss_pred CCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEEcccCcCcccCCchhhccCCCccEEE
Q 004617 213 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN 292 (742)
Q Consensus 213 ~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~ 292 (742)
+.+.|+++++.++ .+|..+ .+.++.|++++|.++..... + .++|+.|++++|.++ .+|..+. ++|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~-l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPEN-L--QGNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChh-h--ccCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 4566777776665 355433 24566777777766643322 2 246777777777776 5665443 3667777
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccCCCccCCcccc
Q 004617 293 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL 372 (742)
Q Consensus 293 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L 372 (742)
+++|++. .+|..+. .+|+.|++++|+++ .+|..++ ++|+.|++++|.+.. +|..+. ++|
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~------------LP~~lp--~sL 306 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT------------LPAHLP--SGI 306 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc------------Ccccch--hhH
Confidence 7777766 3344432 35777777777776 5665442 366677666665543 222221 356
Q ss_pred chhcCCCCcccCCCCccccCCCCCcEEEcCCccCc
Q 004617 373 IHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 407 (742)
Q Consensus 373 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 407 (742)
+.|++++|.+.. +|..+ .++|+.|++++|.++
T Consensus 307 ~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 307 THLNVQSNSLTA-LPETL--PPGLKTLEAGENALT 338 (754)
T ss_pred HHHHhcCCcccc-CCccc--cccceeccccCCccc
Confidence 666666666653 23222 135555666655554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=2.8e-18 Score=179.26 Aligned_cols=85 Identities=25% Similarity=0.288 Sum_probs=42.1
Q ss_pred ccccEEEccCCcCCCCCccccc-----CcCCCCEEEcccccCCCC----CCccccCCCCCCEEECcCCccccc----CCc
Q 004617 545 SLLSGLYLSCNKLIGHIPPQIG-----NLTRIQTLNLSYNNLTGL----IPSTFSNLKHIESLDLSYNKLNGK----IPH 611 (742)
Q Consensus 545 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~ 611 (742)
++|+.|++++|.+.+.....+. ..+.|++|++++|.++.. ....+..+++|+.+++++|.++.. ...
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 3566666666655532222211 125666666666666521 123344445666666666666532 222
Q ss_pred cccCC-CCCCeEecCCCcc
Q 004617 612 QLVEL-KTLEVFSVAYNNL 629 (742)
Q Consensus 612 ~l~~l-~~L~~L~l~~N~l 629 (742)
.+... +.|+.+++.+|+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 301 SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhhcCCchhhcccCCCCC
Confidence 23333 4566666666554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=1.1e-17 Score=174.67 Aligned_cols=266 Identities=23% Similarity=0.212 Sum_probs=157.0
Q ss_pred EEEccCCcCc-ccCCccccCCCCCCEEEccccccCCC----CchhhhhcCCCCcEEEccccccccceecccccccccCCC
Q 004617 290 VFNISMNALD-GSIPSSFGNMKFLQLLDLSNNQLTGE----IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 364 (742)
Q Consensus 290 ~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~ 364 (742)
.|+|..+.++ ......|..+..|+.++++++.+++. ++.. ....++|++++++.+.+.. . .......+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~----~-~~~~~~~~~ 75 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGR----I-PRGLQSLLQ 75 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCC----c-chHHHHHHH
Confidence 3566666665 23334456667788888888877522 2222 2245667777777665431 0 000011223
Q ss_pred ccCCccccchhcCCCCcccCCCCccccCCCC---CcEEEcCCccCcccCCCCCCCCCccEEEccCcccccccccccCCcc
Q 004617 365 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYS---LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNL 441 (742)
Q Consensus 365 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~ 441 (742)
.+..+++|++|++++|.+....+..+..+.+ |++|++++|++.. ...
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-----------------------~~~------- 125 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD-----------------------RGL------- 125 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch-----------------------HHH-------
Confidence 3444555555555555554433333333333 5555555554431 000
Q ss_pred cCCCCChhhhcC-CCCCEEEcCCCcCccC----CcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCccc
Q 004617 442 LNGSIPDWIGEL-SQLSHLILGHNNLEGE----VPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEK 516 (742)
Q Consensus 442 l~~~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (742)
..+...+..+ ++|+.|++++|.+++. .+..+..++.|++|++++|.+.+.....+..
T Consensus 126 --~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~---------------- 187 (319)
T cd00116 126 --RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE---------------- 187 (319)
T ss_pred --HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH----------------
Confidence 0122334455 7888888888887732 2345667778888888888776421110000
Q ss_pred ccccccccCCCcccccccchheecccccccccEEEccCCcCCCCC----cccccCcCCCCEEEcccccCCCCCCcccc--
Q 004617 517 FEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHI----PPQIGNLTRIQTLNLSYNNLTGLIPSTFS-- 590 (742)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-- 590 (742)
.....+.|+.|++++|.+.+.. ...+..+++|++|++++|.+++.....+.
T Consensus 188 -----------------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~ 244 (319)
T cd00116 188 -----------------------GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244 (319)
T ss_pred -----------------------HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH
Confidence 0001247888999988886443 33466788999999999999863332222
Q ss_pred ---CCCCCCEEECcCCcccc----cCCccccCCCCCCeEecCCCccccc
Q 004617 591 ---NLKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSVAYNNLSGE 632 (742)
Q Consensus 591 ---~l~~L~~L~Ls~N~i~~----~~~~~l~~l~~L~~L~l~~N~l~~~ 632 (742)
..+.|++|++++|.++. .+...+..+++|+.+++++|.+...
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 24799999999999862 3344566678999999999999954
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=5e-18 Score=146.59 Aligned_cols=183 Identities=30% Similarity=0.522 Sum_probs=143.2
Q ss_pred CccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCCCCCccEEEccCcccccccccccCCcccCCCCC
Q 004617 368 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP 447 (742)
Q Consensus 368 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~ 447 (742)
.+.+++.|.++.|+++ .+|..+..+.+|+.|++++|++. .+|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------------------------------------~lp 72 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------------------------------------ELP 72 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------------------------------------hcC
Confidence 4455666666666666 44555666666777777666665 566
Q ss_pred hhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeee-cCCCCcccccccccccCCCCCcccccccccccCC
Q 004617 448 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHG-SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP 526 (742)
Q Consensus 448 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (742)
..++.+++|+.|+++.|++. +.|..|+.++.|+.||+..|++.. ..|..|..+
T Consensus 73 ~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m------------------------- 126 (264)
T KOG0617|consen 73 TSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM------------------------- 126 (264)
T ss_pred hhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHH-------------------------
Confidence 67888899999999999988 788899999999999999998875 356666443
Q ss_pred CcccccccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCccc
Q 004617 527 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 606 (742)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 606 (742)
..|+.|+|++|.+. .+|...+++++|+.|.+..|.+. ..|..++.++.|++|++.+|+++
T Consensus 127 ------------------~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 127 ------------------TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ------------------HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 37889999999997 77888999999999999999988 55788999999999999999998
Q ss_pred ccCCccccCCC---CCCeEecCCCcccccccc
Q 004617 607 GKIPHQLVELK---TLEVFSVAYNNLSGEILE 635 (742)
Q Consensus 607 ~~~~~~l~~l~---~L~~L~l~~N~l~~~~~~ 635 (742)
.+|..++.+. +=+++.+.+|||...+.+
T Consensus 187 -vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 187 -VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred -ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 6776666653 335567888999887754
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=4.8e-16 Score=134.43 Aligned_cols=159 Identities=30% Similarity=0.490 Sum_probs=122.7
Q ss_pred CCCCcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCc
Q 004617 259 SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ 338 (742)
Q Consensus 259 ~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 338 (742)
.+..++.|.+++|.++ .+|+.+.. +.+|+.|++.+|+|. .+|..+..+++|+.|+++.|++. .+|.++. .++.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhh
Confidence 4566677788888887 77877776 668888888888887 46777788888888888888886 7777654 688888
Q ss_pred EEEccccccccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCCCCC
Q 004617 339 FLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS 418 (742)
Q Consensus 339 ~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~ 418 (742)
.|||..|.+.+ ...|+.|-.++.|+.|++++|.+. ..|..++.+++|+.|.+..|.+.
T Consensus 106 vldltynnl~e----------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll----------- 163 (264)
T KOG0617|consen 106 VLDLTYNNLNE----------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL----------- 163 (264)
T ss_pred hhhcccccccc----------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-----------
Confidence 88887777664 246777888888888888888887 67777888888888888888765
Q ss_pred ccEEEccCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCC
Q 004617 419 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV 470 (742)
Q Consensus 419 L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 470 (742)
.+|..++.++.|+.|++.+|+++...
T Consensus 164 --------------------------~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 164 --------------------------SLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred --------------------------hCcHHHHHHHHHHHHhcccceeeecC
Confidence 56667777788888888888887433
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=4.4e-13 Score=150.22 Aligned_cols=117 Identities=35% Similarity=0.592 Sum_probs=105.6
Q ss_pred cccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEecC
Q 004617 546 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 625 (742)
Q Consensus 546 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~ 625 (742)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccc-ccCCcccccCCcCCCCCCC-CCC
Q 004617 626 YNNLSGEILEWTAQF-ATFNKSSYEGNTFLCGLPL-PIC 662 (742)
Q Consensus 626 ~N~l~~~~~~~~~~~-~~~~~~~~~~n~~~c~~~~-~~C 662 (742)
+|+++|.+|..+... .......+.+|+.+|+.|. ..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 999999999876553 3455677899999998653 245
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=2.1e-11 Score=115.41 Aligned_cols=132 Identities=27% Similarity=0.270 Sum_probs=106.0
Q ss_pred CCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCcccccccccccCCCccccc
Q 004617 453 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT 532 (742)
Q Consensus 453 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (742)
...|+++||++|.|+ .+.++..-.|.++.|++++|.+..... ++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La--------------------------------- 326 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LA--------------------------------- 326 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hh---------------------------------
Confidence 467899999999998 455677778999999999999874322 22
Q ss_pred ccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCC-c
Q 004617 533 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-H 611 (742)
Q Consensus 533 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~ 611 (742)
.+++|+.|||++|.++. +.++=..+.+.++|.|+.|.|..+ +.++.+-+|..||+++|+|..... .
T Consensus 327 ----------~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~ 393 (490)
T KOG1259|consen 327 ----------ELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVN 393 (490)
T ss_pred ----------hcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhc
Confidence 15589999999999874 344445688999999999999876 678888999999999999975433 4
Q ss_pred cccCCCCCCeEecCCCcccccc
Q 004617 612 QLVELKTLEVFSVAYNNLSGEI 633 (742)
Q Consensus 612 ~l~~l~~L~~L~l~~N~l~~~~ 633 (742)
.++++|.|+++.+.+||+....
T Consensus 394 ~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ccccccHHHHHhhcCCCccccc
Confidence 5788999999999999999755
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=5.5e-12 Score=129.60 Aligned_cols=195 Identities=30% Similarity=0.486 Sum_probs=122.7
Q ss_pred CCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccCCCccCCccccchhcCCCCcccCCCC
Q 004617 308 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP 387 (742)
Q Consensus 308 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 387 (742)
.+..-...|++.|++. ++|..+. .+..|+.+.|..|.+.. +|..+.++..|++++|+.|++. ..|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r~------------ip~~i~~L~~lt~l~ls~NqlS-~lp 137 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIRT------------IPEAICNLEALTFLDLSSNQLS-HLP 137 (722)
T ss_pred cccchhhhhccccccc-cCchHHH-HHHHHHHHHHHhcccee------------cchhhhhhhHHHHhhhccchhh-cCC
Confidence 3445567788888887 8887765 46667777777776653 5667777777777777777776 445
Q ss_pred ccccCCCCCcEEEcCCccCcccCCCCCCCCCccEEEccCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCc
Q 004617 388 VEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLE 467 (742)
Q Consensus 388 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 467 (742)
..++.++ |+.|-+++|+++ .+|..++.+..|..|+.+.|.+.
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~-------------------------------------~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLT-------------------------------------SLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred hhhhcCc-ceeEEEecCccc-------------------------------------cCCcccccchhHHHhhhhhhhhh
Confidence 5555553 666667766665 33444455566666666666666
Q ss_pred cCCcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCcccccccccccCCCcccccccchheecccccccc
Q 004617 468 GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLL 547 (742)
Q Consensus 468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 547 (742)
..|..++++.+|+.|.++.|++. ..|+.+..++ |
T Consensus 180 -slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp--------------------------------------------L 213 (722)
T KOG0532|consen 180 -SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--------------------------------------------L 213 (722)
T ss_pred -hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--------------------------------------------e
Confidence 34555666777777777777665 3343333333 6
Q ss_pred cEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccc---cCCCCCCEEECcCC
Q 004617 548 SGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTF---SNLKHIESLDLSYN 603 (742)
Q Consensus 548 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N 603 (742)
..||+++|++. .+|-.|.+|+.|++|-|.+|.++ .+|..+ +...=-++|+..-+
T Consensus 214 i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 66777777776 56667777777777777777777 333222 22233445555555
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.4e-10 Score=106.05 Aligned_cols=123 Identities=26% Similarity=0.396 Sum_probs=39.1
Q ss_pred hhhcCCCCCCEEeCCCCcCCcccccccc-CCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCCCcccceeec
Q 004617 23 ERLSRLNNLKMLNLSGNSFNNTILSSLT-HLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYL 101 (742)
Q Consensus 23 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l 101 (742)
..+.+..++++|+|.+|.|+.+. .++ .+.+|+.|++++|.|+ .++ .+..+++|++|++++|+|+
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~---------- 77 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRIS---------- 77 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS-------------
T ss_pred ccccccccccccccccccccccc--chhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCC----------
Confidence 34566678999999999998763 354 5789999999999998 666 6888999999999999887
Q ss_pred CCCcceeccCHhhh-cCCCCcCEEEccCCCCCC---------CCCCCEEecCCCcccccc--CcccccCCCCCcEEEcc
Q 004617 102 DDTGFKGTLDIREF-DSFNNLEVLDMSYNKIDN---------LVVPQELRLSDNHFRIPI--SLEPLFNHSRLKIFHAK 168 (742)
Q Consensus 102 ~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~---------~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~l~ 168 (742)
.++. .+ ..+++|++|++++|++.. ++.|+.|++.+|+++... ....+..+++|+.|+-.
T Consensus 78 -------~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 78 -------SISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -------S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred -------cccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 3332 22 235555555555555544 455555555555554221 12235677777777654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=2.6e-11 Score=124.67 Aligned_cols=194 Identities=27% Similarity=0.430 Sum_probs=148.2
Q ss_pred CCCcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcE
Q 004617 260 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 339 (742)
Q Consensus 260 l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 339 (742)
+..-...|++.|.+. ++|..+.. +..|+.+.+..|.+. .+|.++.++..|..+||+.|+++ .+|..++ .+ -|+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLKV 147 (722)
T ss_pred ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-ccee
Confidence 444556788889987 88887765 568888888888887 56778888899999999999998 8888887 34 4888
Q ss_pred EEccccccccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCCCCCc
Q 004617 340 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI 419 (742)
Q Consensus 340 L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L 419 (742)
|-+++|+++. .|..++....|..||.+.|.+. ..|..++++.+|+.|++..|++....+... ...|
T Consensus 148 li~sNNkl~~------------lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpL 213 (722)
T KOG0532|consen 148 LIVSNNKLTS------------LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPL 213 (722)
T ss_pred EEEecCcccc------------CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCce
Confidence 8888888774 6778888888999999988887 567778888899999999888875544433 6677
Q ss_pred cEEEccCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccC---CCCCCEEEcCCC
Q 004617 420 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCE---LNQLQLLDLSNN 488 (742)
Q Consensus 420 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n 488 (742)
..||++.|++. .+|..|..+..|++|-|.+|.+.. .|..++- ..--++|+..-|
T Consensus 214 i~lDfScNkis--------------~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSCNKIS--------------YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeecccCcee--------------ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 88877777666 678888889999999999998884 3333321 222456666665
No 28
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=7.9e-10 Score=124.21 Aligned_cols=114 Identities=32% Similarity=0.492 Sum_probs=103.1
Q ss_pred CCCEEEcCCCeeeecCCCCcccccccccccCCCCCcccccccccccCCCcccccccchheecccccccccEEEccCCcCC
Q 004617 479 QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI 558 (742)
Q Consensus 479 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 558 (742)
.++.|+|++|.+.|.+|..+..+. +|+.|+|++|.+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-------------------------------------------~L~~L~Ls~N~l~ 455 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-------------------------------------------HLQSINLSGNSIR 455 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-------------------------------------------CCCEEECCCCccc
Confidence 478899999999998888776644 8999999999999
Q ss_pred CCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccccCC-CCCCeEecCCCcccccccc
Q 004617 559 GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEILE 635 (742)
Q Consensus 559 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~ 635 (742)
+.+|..+..+++|+.|+|++|++++.+|+.++++++|+.|+|++|.+++.+|..+... .++..+++.+|+..|..|.
T Consensus 456 g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999988764 5678899999998886653
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=9e-10 Score=118.39 Aligned_cols=60 Identities=33% Similarity=0.457 Sum_probs=28.0
Q ss_pred CCccEEEccCCcCcccCCccccCCC-CCCEEEccccccCCCCchhhhhcCCCCcEEEccccccc
Q 004617 286 PSLYVFNISMNALDGSIPSSFGNMK-FLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK 348 (742)
Q Consensus 286 ~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 348 (742)
+.++.|++.+|.+..+ +.....+. +|+.|++++|.+. .+|..+. .+++|+.|+++.|++.
T Consensus 116 ~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 116 TNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS 176 (394)
T ss_pred cceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhh
Confidence 3455555555555532 22233332 5555555555554 4432222 4455555555544444
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.6e-10 Score=109.52 Aligned_cols=114 Identities=33% Similarity=0.388 Sum_probs=85.3
Q ss_pred CChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCcccccccccccC
Q 004617 446 IPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG 525 (742)
Q Consensus 446 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (742)
+..+.+-+|.++.|++++|.+..+. .++.+++|+.||+++|.++... .+-
T Consensus 299 iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~-Gwh--------------------------- 348 (490)
T KOG1259|consen 299 IDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECV-GWH--------------------------- 348 (490)
T ss_pred hhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhh-hhH---------------------------
Confidence 3344555788888888888887433 3778888999999998876321 111
Q ss_pred CCcccccccchheecccccccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCC-CccccCCCCCCEEECcCCc
Q 004617 526 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI-PSTFSNLKHIESLDLSYNK 604 (742)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~ 604 (742)
.-+.+.+.|.|++|.+... ..++.+-+|..||+++|+|.... -..++++|-|+.+.|.+|+
T Consensus 349 ----------------~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 ----------------LKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ----------------hhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 1144788899999988633 45677889999999999998664 2578999999999999999
Q ss_pred ccc
Q 004617 605 LNG 607 (742)
Q Consensus 605 i~~ 607 (742)
+.+
T Consensus 411 l~~ 413 (490)
T KOG1259|consen 411 LAG 413 (490)
T ss_pred ccc
Confidence 984
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.7e-10 Score=113.92 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=25.0
Q ss_pred CcccceeecCCCcceeccCH-hhhcCCCCcCEEEccCCCCCC
Q 004617 93 FVVSKELYLDDTGFKGTLDI-REFDSFNNLEVLDMSYNKIDN 133 (742)
Q Consensus 93 l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~ 133 (742)
+.+|+++.+.++... ..+. .....|++++.||||.|-+..
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~n 160 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHN 160 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHh
Confidence 556666666666554 2221 356677888888888776654
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=1e-09 Score=117.93 Aligned_cols=178 Identities=34% Similarity=0.480 Sum_probs=107.1
Q ss_pred CCCcEEEcCCccCcccCCCCCCCC-CccEEEccCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCCcc
Q 004617 394 YSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV 472 (742)
Q Consensus 394 ~~L~~L~L~~n~i~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 472 (742)
+.++.|++.+|.++...+...... .|++|++++|.+. .+|..+..+++|+.|++++|++.. .+.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--------------~l~~~~~~l~~L~~L~l~~N~l~~-l~~ 180 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--------------SLPSPLRNLPNLKNLDLSFNDLSD-LPK 180 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh--------------hhhhhhhccccccccccCCchhhh-hhh
Confidence 445555555555554433333332 5555555555443 333446667777777777777773 333
Q ss_pred cccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCcccccccccccCCCcccccccchheecccccccccEEEc
Q 004617 473 QLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYL 552 (742)
Q Consensus 473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 552 (742)
.....+.|+.|++++|.+... |..... +..|+++.+
T Consensus 181 ~~~~~~~L~~L~ls~N~i~~l-~~~~~~-------------------------------------------~~~L~~l~~ 216 (394)
T COG4886 181 LLSNLSNLNNLDLSGNKISDL-PPEIEL-------------------------------------------LSALEELDL 216 (394)
T ss_pred hhhhhhhhhheeccCCccccC-chhhhh-------------------------------------------hhhhhhhhh
Confidence 333667777777777777632 221111 224777777
Q ss_pred cCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEecCCCccccc
Q 004617 553 SCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 632 (742)
Q Consensus 553 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~ 632 (742)
++|.+. ..+..+..++++..|.+++|++... +..++.++++++|++++|.++...+ +..+.+++.|++++|.+...
T Consensus 217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 777533 3445566777777777777777643 4566677777777777777774333 66777777777777777654
Q ss_pred cc
Q 004617 633 IL 634 (742)
Q Consensus 633 ~~ 634 (742)
.+
T Consensus 293 ~~ 294 (394)
T COG4886 293 LP 294 (394)
T ss_pred ch
Confidence 43
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.4e-10 Score=115.84 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=26.9
Q ss_pred cCCCCCEEEcCCCcCccCC-cccccCCCCCCEEEcCCCeee
Q 004617 452 ELSQLSHLILGHNNLEGEV-PVQLCELNQLQLLDLSNNSLH 491 (742)
Q Consensus 452 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 491 (742)
.+++|+.|+++.|++.... ...+..+++|+.|.+..|.++
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 4578888888888885332 223555677777777777765
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=4.1e-11 Score=116.45 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=50.3
Q ss_pred ccccEEEccCCcCCCC----CcccccCcCCCCEEEcccccCCCCCCccc-----cCCCCCCEEECcCCcccc----cCCc
Q 004617 545 SLLSGLYLSCNKLIGH----IPPQIGNLTRIQTLNLSYNNLTGLIPSTF-----SNLKHIESLDLSYNKLNG----KIPH 611 (742)
Q Consensus 545 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~N~i~~----~~~~ 611 (742)
++|++|||++|.++.. +..++..+++|++|++++|.+...-..+| ...++|+.|.+.+|.|+. .+..
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 3455555555544322 23345556667777777776664432222 235677777777777753 2333
Q ss_pred cccCCCCCCeEecCCCccc
Q 004617 612 QLVELKTLEVFSVAYNNLS 630 (742)
Q Consensus 612 ~l~~l~~L~~L~l~~N~l~ 630 (742)
++...+.|..|++++|.+.
T Consensus 293 ~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhcchhhHHhcCCccccc
Confidence 4455777888888888873
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.1e-09 Score=82.27 Aligned_cols=60 Identities=48% Similarity=0.618 Sum_probs=34.5
Q ss_pred cccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcc
Q 004617 546 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 605 (742)
Q Consensus 546 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i 605 (742)
+|+.|++++|++..+.+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555655555555555555555555555555555555555555555555555555543
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=1.6e-10 Score=112.46 Aligned_cols=249 Identities=18% Similarity=0.179 Sum_probs=135.3
Q ss_pred CCCCccceEEEeecCCCCCCccChh----ccCCCCCCEEEccCCC---CCCCCchhHHhcCCCCCEEecCCccccccCcc
Q 004617 183 TAPNFQLQSLSLSSSYGDGVTFPKF----LYHQHDLEYVRLSHIK---MNGEFPNWLLENNTKLATLFLVNDSLAGPFWL 255 (742)
Q Consensus 183 ~~~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~---~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~ 255 (742)
..+...++.+++ +++.++.....+ +.+.++|+..++++.- ....+|..+- ....
T Consensus 26 ~~~~~s~~~l~l-sgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~------------------~l~~ 86 (382)
T KOG1909|consen 26 LEPMDSLTKLDL-SGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK------------------MLSK 86 (382)
T ss_pred hcccCceEEEec-cCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH------------------HHHH
Confidence 344456777777 566555543333 3345666666666431 2222333210 0001
Q ss_pred CCCCCCCcCEEEcccCcCcccCCchhh---ccCCCccEEEccCCcCcccC-------------CccccCCCCCCEEEccc
Q 004617 256 PIHSHKRLGILDISNNNIRGHIPVEIG---DVLPSLYVFNISMNALDGSI-------------PSSFGNMKFLQLLDLSN 319 (742)
Q Consensus 256 ~~~~l~~L~~L~l~~n~i~~~i~~~~~---~~l~~L~~L~l~~n~i~~~~-------------~~~~~~l~~L~~L~L~~ 319 (742)
++..+++|++|+||+|.+.-..+..+. .....|++|.+.+|.+.-.. ......-+.|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 223344555555555554422222211 12345555555555443110 11223456788888888
Q ss_pred cccCCCCch----hhhhcCCCCcEEEccccccccceecccccccccCCCccCCccccchhcCCCCcccCC----CCcccc
Q 004617 320 NQLTGEIPE----HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP----IPVEFC 391 (742)
Q Consensus 320 n~l~~~~~~----~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~ 391 (742)
|++. ..+. ..|+..+.|+.+.++.|.|... .+ ......|..+++|+.|||.+|.++.. ...++.
T Consensus 167 Nrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~e------G~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 167 NRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPE------GV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred cccc-cccHHHHHHHHHhccccceEEEecccccCc------hh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 8885 4432 3455667888888888876530 11 12334567778888888888777643 344566
Q ss_pred CCCCCcEEEcCCccCcccCCCCCCCCCccEEEccCcccccccccccCCcccCCCCChhh-hcCCCCCEEEcCCCcCccC-
Q 004617 392 QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI-GELSQLSHLILGHNNLEGE- 469 (742)
Q Consensus 392 ~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~- 469 (742)
.+++|+.|++++|.+.......+ ..++ ...|+|++|.|.+|.++..
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~--------------------------------~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAF--------------------------------VDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred ccchheeecccccccccccHHHH--------------------------------HHHHhccCCCCceeccCcchhHHHH
Confidence 77777888887777653322211 1112 2257788888888877632
Q ss_pred ---CcccccCCCCCCEEEcCCCee
Q 004617 470 ---VPVQLCELNQLQLLDLSNNSL 490 (742)
Q Consensus 470 ---~~~~~~~l~~L~~L~L~~n~l 490 (742)
+..+....+.|+.|+|++|.+
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcccc
Confidence 223345567788888888877
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.7e-09 Score=81.27 Aligned_cols=61 Identities=39% Similarity=0.622 Sum_probs=58.1
Q ss_pred CCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEecCCCcc
Q 004617 569 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 629 (742)
Q Consensus 569 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 629 (742)
++|++|++++|+++.+.++.|.++++|++|++++|.++...|..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999999999999999999999999999988889999999999999999975
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=2e-09 Score=98.50 Aligned_cols=103 Identities=34% Similarity=0.523 Sum_probs=39.5
Q ss_pred ccCCCCCCEEeCCCCCCCCcCChhhcC-CCCCCCEEECCCCCCCCCcccceeecCCCcceeccCHhhhcCCCCcCEEEcc
Q 004617 49 LTHLSSLRSLNLNGNSLEGSIDVKEFD-SLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMS 127 (742)
Q Consensus 49 ~~~l~~L~~L~Ls~n~i~~~i~~~~~~-~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls 127 (742)
+.+...++.|+|.+|.|+ .|+ .++ .+.+|+.|+|++|.|+ .++ .+..+++|+.|+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~-----------------~l~--~l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQIT-----------------KLE--GLPGLPRLKTLDLS 72 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S-------------------T--T----TT--EEE--
T ss_pred cccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCc-----------------ccc--CccChhhhhhcccC
Confidence 445668899999999998 665 454 6889999999988887 444 47778999999999
Q ss_pred CCCCCC--------CCCCCEEecCCCccccccCcccccCCCCCcEEEccCCccc
Q 004617 128 YNKIDN--------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMN 173 (742)
Q Consensus 128 ~n~l~~--------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 173 (742)
+|+++. +++|+.|++++|.+........++.+++|+.|++.+|.+.
T Consensus 73 ~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 73 NNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 999876 6788889998888876556677888888888888888764
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.6e-09 Score=116.53 Aligned_cols=247 Identities=29% Similarity=0.304 Sum_probs=135.8
Q ss_pred CCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccCCC
Q 004617 285 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 364 (742)
Q Consensus 285 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~ 364 (742)
+..++.+.++.|.+... -..+..+++|+.|++.+|.+. .+... ...+++|++|++++|.|.. -.
T Consensus 71 l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~-------------i~ 134 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITK-------------LE 134 (414)
T ss_pred hHhHHhhccchhhhhhh-hcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccc-------------cc
Confidence 34555555666665531 223455666677777777665 33331 1246666676666666654 22
Q ss_pred ccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCccCcccCCCCCCCCCccEEEccCcccccccccccCCcccCC
Q 004617 365 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 444 (742)
Q Consensus 365 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~ 444 (742)
.+..++.|+.|++.+|.+... ..+..+..|+.+++++|.+......
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~-------------------------------- 180 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND-------------------------------- 180 (414)
T ss_pred chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhh--------------------------------
Confidence 344445566666666666532 2234466666666666666532211
Q ss_pred CCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeeeecCCCCcccccccccccCCCCCccccccccccc
Q 004617 445 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 524 (742)
Q Consensus 445 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (742)
. ...+.+++.+++++|.+..+. .+..+..+..+++..|.+...-+...
T Consensus 181 ---~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~l~~-------------------------- 228 (414)
T KOG0531|consen 181 ---E-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEGLNE-------------------------- 228 (414)
T ss_pred ---h-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccCccc--------------------------
Confidence 0 233455666666666655322 23333344444556665542221100
Q ss_pred CCCcccccccchheecccccc--cccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcC
Q 004617 525 GPQGDFTTKNIAYIYQGKVLS--LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 602 (742)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 602 (742)
.. +|+.+++++|.+... +..+..+..+..|++.+|++... ..+...+.+..+....
T Consensus 229 -------------------~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 229 -------------------LVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLND 286 (414)
T ss_pred -------------------chhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCc
Confidence 11 266777777776532 24556677778888888877755 4455566777777777
Q ss_pred Ccccc---cCCcc-ccCCCCCCeEecCCCcccccccc
Q 004617 603 NKLNG---KIPHQ-LVELKTLEVFSVAYNNLSGEILE 635 (742)
Q Consensus 603 N~i~~---~~~~~-l~~l~~L~~L~l~~N~l~~~~~~ 635 (742)
|.+.. ..... ....+.+..+.+.+|+.....+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred chhcchhhhhccccccccccccccccccCcccccccc
Confidence 77652 11111 34456777778888877765543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=4.4e-09 Score=113.11 Aligned_cols=105 Identities=27% Similarity=0.257 Sum_probs=48.9
Q ss_pred CCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccCCC
Q 004617 285 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 364 (742)
Q Consensus 285 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~ 364 (742)
+.+++.|++.+|+|..+.. .+..+++|++|++++|.|+ .+..-. .++.|+.|++++|.+.. ..
T Consensus 94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~~L~l~~N~i~~-------------~~ 156 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLKELNLSGNLISD-------------IS 156 (414)
T ss_pred ccceeeeeccccchhhccc-chhhhhcchheeccccccc-cccchh--hccchhhheeccCcchh-------------cc
Confidence 3444555555554443221 1334455555555555554 222211 23345555555555443 22
Q ss_pred ccCCccccchhcCCCCcccCCCC-ccccCCCCCcEEEcCCccCc
Q 004617 365 WLGNLTWLIHIIMPENHLEGPIP-VEFCQLYSLQILDISDNNIS 407 (742)
Q Consensus 365 ~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~ 407 (742)
.+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+.
T Consensus 157 ~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 33345555555555555554333 1 345555666666665554
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=5.2e-08 Score=111.98 Aligned_cols=127 Identities=28% Similarity=0.395 Sum_probs=61.4
Q ss_pred CcCEEEcccCcCcccCCchhhccCCCccEEEccCCc--CcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcE
Q 004617 262 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA--LDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 339 (742)
Q Consensus 262 ~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 339 (742)
..+.+.+-+|.+. .++.... .+.|++|-+..|. +..+....|..++.|++|||++|.--+.+|..+. .+-+|++
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~Lry 599 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRY 599 (889)
T ss_pred heeEEEEeccchh-hccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhc
Confidence 3444444444443 3333221 2345555555553 3333333355555555555555443335555543 4555555
Q ss_pred EEccccccccceecccccccccCCCccCCccccchhcCCCCcccCCCCccccCCCCCcEEEcCCc
Q 004617 340 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDN 404 (742)
Q Consensus 340 L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 404 (742)
|++++..+.. +|..++.+..|.+|++..+......+.....+++|++|.+...
T Consensus 600 L~L~~t~I~~------------LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGISH------------LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCCccc------------cchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 5555555442 4555555555555555555443334444455556666555544
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.52 E-value=8.7e-08 Score=110.15 Aligned_cols=130 Identities=27% Similarity=0.358 Sum_probs=83.0
Q ss_pred cCCCCCEEecCCccccccCccCCCCCCCcCEEEcccCc--CcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCC
Q 004617 235 NNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN--IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFL 312 (742)
Q Consensus 235 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~--i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 312 (742)
+....+.+.+.++.+...... ..++.|++|-+..|. +. .++..+|..++.|+.||+++|.-.+.+|..++.+-+|
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 335556666666655432211 123467777777775 44 6677777777777777777776556677777777777
Q ss_pred CEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccCCCccCCccccchhcCCCC
Q 004617 313 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 380 (742)
Q Consensus 313 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 380 (742)
+.|++++..++ .+|..+. .+..|.+|++..+.... ..+.....+.+|++|.+..-
T Consensus 598 ryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~-----------~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLE-----------SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hcccccCCCcc-ccchHHH-HHHhhheeccccccccc-----------cccchhhhcccccEEEeecc
Confidence 77777777777 7777664 57777777776665432 22444555777777776544
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=7.3e-09 Score=109.83 Aligned_cols=44 Identities=34% Similarity=0.408 Sum_probs=23.3
Q ss_pred CChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCCeee
Q 004617 446 IPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 491 (742)
Q Consensus 446 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 491 (742)
+..++.-++.|+.|+|++|+++... .+..++.|++|||+.|.+.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc
Confidence 3344444555555666665555322 4555555555555555554
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1.3e-07 Score=90.14 Aligned_cols=104 Identities=26% Similarity=0.371 Sum_probs=54.7
Q ss_pred CCCCCEEeCCCCCCCCcCChhhcC-CCCCCCEEECCCCCCCCCcccceeecCCCcceeccCHhhhcCCCCcCEEEccCCC
Q 004617 52 LSSLRSLNLNGNSLEGSIDVKEFD-SLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNK 130 (742)
Q Consensus 52 l~~L~~L~Ls~n~i~~~i~~~~~~-~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 130 (742)
.+-++.|.+.++.|-..-....|+ ..+.++.+||..|.|+... .+.. .+.++|.|+.|++|.|.
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs--------------eI~~-ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS--------------EIGA-ILEQLPALTTLNLSCNS 108 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH--------------HHHH-HHhcCccceEeeccCCc
Confidence 334445566666554222222332 3556666777766665211 2222 45566666666666666
Q ss_pred CCC--------CCCCCEEecCCCccccccCcccccCCCCCcEEEccCC
Q 004617 131 IDN--------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNN 170 (742)
Q Consensus 131 l~~--------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 170 (742)
+.. ..+|+.+-+.+..+........+..++.++++.++.|
T Consensus 109 L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 109 LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 544 2344555555554443444444566666777777666
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=1.4e-08 Score=107.71 Aligned_cols=147 Identities=23% Similarity=0.323 Sum_probs=112.9
Q ss_pred hhcCCCCCCEEeCCCCcCCcc-------------cc--------ccccC----------CCCCCEEeCCCCCCCCcCChh
Q 004617 24 RLSRLNNLKMLNLSGNSFNNT-------------IL--------SSLTH----------LSSLRSLNLNGNSLEGSIDVK 72 (742)
Q Consensus 24 ~~~~l~~L~~L~Ls~n~i~~~-------------~~--------~~~~~----------l~~L~~L~Ls~n~i~~~i~~~ 72 (742)
++..++.||+|.+.++++... ++ +.|.. .-.|.+.++++|.++ .++ .
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD-~ 181 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD-E 181 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH-H
Confidence 456778899999988876421 00 00110 125667788888887 666 7
Q ss_pred hcCCCCCCCEEECCCCCCCC------CcccceeecCCCcceeccCHhhhcCCCCcCEEEccCCCCCC------CCCCCEE
Q 004617 73 EFDSLRDLEELDIGENKIDK------FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN------LVVPQEL 140 (742)
Q Consensus 73 ~~~~l~~L~~L~Ls~n~l~~------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~L~~L 140 (742)
++.-++.|+.|||++|+++. +++|++|||++|.+. .+|.-....|+ |+.|.+++|.+++ +.+|+.|
T Consensus 182 SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~L 259 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhhhhHHhhhhhhcc
Confidence 88889999999999999875 889999999999988 56664666677 9999999998776 6788999
Q ss_pred ecCCCccccccCcccccCCCCCcEEEccCCcccc
Q 004617 141 RLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNA 174 (742)
Q Consensus 141 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 174 (742)
|++.|-+.+--....+..+..|+.|.+.+|.+..
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 9999988765556667888889999999998753
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=5e-08 Score=92.96 Aligned_cols=174 Identities=18% Similarity=0.056 Sum_probs=99.2
Q ss_pred CCCCEEECCCCCCCC---------CcccceeecCCCcceeccCHhhhcCCCCcCEEEccCCC-CCCCCCCCEEecCCCcc
Q 004617 78 RDLEELDIGENKIDK---------FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNK-IDNLVVPQELRLSDNHF 147 (742)
Q Consensus 78 ~~L~~L~Ls~n~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~L~~L~l~~n~~ 147 (742)
..||++|||+..|+. |.+|+.|.+.++.+...+.. .+.+-.+|+.|+++++. ++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~-------------- 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTE-------------- 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccch--------------
Confidence 358888888877662 55666666666665544444 55556666666666542 221
Q ss_pred ccccCcccccCCCCCcEEEccCCcccccccccccCCCCCccceEEEeecCCC--CCC-ccChhccCCCCCCEEEccCCCC
Q 004617 148 RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYG--DGV-TFPKFLYHQHDLEYVRLSHIKM 224 (742)
Q Consensus 148 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~~-~~~~~l~~~~~L~~L~l~~~~~ 224 (742)
..-.--+.+|++|..|++++|....+.....- ..-...|+.|+| +++. +.. .+..--..+++|..||+++|..
T Consensus 250 --n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V-~hise~l~~LNl-sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 250 --NALQLLLSSCSRLDELNLSWCFLFTEKVTVAV-AHISETLTQLNL-SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred --hHHHHHHHhhhhHhhcCchHhhccchhhhHHH-hhhchhhhhhhh-hhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 11111245666677777777665543322111 111126677777 4442 111 1222234688888888888864
Q ss_pred CCCCchhHHhcCCCCCEEecCCccccccCcc---CCCCCCCcCEEEcccCc
Q 004617 225 NGEFPNWLLENNTKLATLFLVNDSLAGPFWL---PIHSHKRLGILDISNNN 272 (742)
Q Consensus 225 ~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~n~ 272 (742)
-.......+-.++.|++|.++.|-. +.|. .+...++|.+|++.++-
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 3333333345778888888887742 3333 45677889999887654
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=5.8e-08 Score=92.54 Aligned_cols=175 Identities=22% Similarity=0.208 Sum_probs=100.6
Q ss_pred CCCEEeCCCCcCCcc-ccccccCCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCCCcccceeecCCCccee
Q 004617 30 NLKMLNLSGNSFNNT-ILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKG 108 (742)
Q Consensus 30 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~~~~ 108 (742)
.|++||||...|+-- ....+..|.+|+.|.+.++.+.+.|- ..+....+|+.|+|+.+. +++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~s---------------G~t~ 249 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCS---------------GFTE 249 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeecccccc---------------ccch
Confidence 478888888777632 23345678888888888888876665 677788888888888542 2221
Q ss_pred ccCHhhhcCCCCcCEEEccCCCCCC----------CCCCCEEecCCCccccccCcccccCCCCCcEEEccCCcccccccc
Q 004617 109 TLDIREFDSFNNLEVLDMSYNKIDN----------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITE 178 (742)
Q Consensus 109 ~~~~~~~~~l~~L~~L~Ls~n~l~~----------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 178 (742)
.-..-.|++|+.|..|+++.+.+.. -+++..|+++++. -......
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r-------------------------rnl~~sh 304 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR-------------------------RNLQKSH 304 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH-------------------------hhhhhhH
Confidence 1112257888999999999887754 2344455555442 1111111
Q ss_pred cccCCCCCccceEEEeecCCCCCCccChhccCCCCCCEEEccCCCCCCCCchhH--HhcCCCCCEEecCCc
Q 004617 179 SHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWL--LENNTKLATLFLVND 247 (742)
Q Consensus 179 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l--~~~l~~L~~L~l~~~ 247 (742)
.......+.++.+|+++.+..+.......+.+++.|++|.++.|.. .+|..+ +...|.|.+|++.++
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 1111122334555555444444444555556666666666666642 233322 234466666666554
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=2.2e-07 Score=88.68 Aligned_cols=82 Identities=15% Similarity=0.241 Sum_probs=57.8
Q ss_pred cccccEEEccCCcCCCCC-cccccCcCCCCEEEcccccCCCCC-CccccCCCCCCEEECcCCcccccCCc------cccC
Q 004617 544 LSLLSGLYLSCNKLIGHI-PPQIGNLTRIQTLNLSYNNLTGLI-PSTFSNLKHIESLDLSYNKLNGKIPH------QLVE 615 (742)
Q Consensus 544 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~~------~l~~ 615 (742)
++++..+.+..|.+.... .+.+..++.+..|+|+.|+|.+.. -+.+..+++|..|.+++|++...... .++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 567888888888776543 344667778888899988887543 25677888899999999988643321 2366
Q ss_pred CCCCCeEecC
Q 004617 616 LKTLEVFSVA 625 (742)
Q Consensus 616 l~~L~~L~l~ 625 (742)
+++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 7777777654
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=3.7e-07 Score=86.05 Aligned_cols=68 Identities=19% Similarity=0.378 Sum_probs=45.7
Q ss_pred hhcCCCCCCEEeCCCCcCCcc----ccccccCCCCCCEEeCCCCCCC---CcCC------hhhcCCCCCCCEEECCCCCC
Q 004617 24 RLSRLNNLKMLNLSGNSFNNT----ILSSLTHLSSLRSLNLNGNSLE---GSID------VKEFDSLRDLEELDIGENKI 90 (742)
Q Consensus 24 ~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~---~~i~------~~~~~~l~~L~~L~Ls~n~l 90 (742)
.+..+..++.+|||+|-|... ++..+.+-++|+..+++.--.. ..++ ..++.+||+|+.++||.|.|
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 455677888999999987644 4445667788888888864321 1111 13556788888888887766
Q ss_pred C
Q 004617 91 D 91 (742)
Q Consensus 91 ~ 91 (742)
.
T Consensus 105 g 105 (388)
T COG5238 105 G 105 (388)
T ss_pred C
Confidence 4
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=8e-07 Score=83.83 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=79.9
Q ss_pred CCCCCCcCEEEcccCcCcccCCchhhc---cCCCccEEEccCCcCcccCC-------------ccccCCCCCCEEEcccc
Q 004617 257 IHSHKRLGILDISNNNIRGHIPVEIGD---VLPSLYVFNISMNALDGSIP-------------SSFGNMKFLQLLDLSNN 320 (742)
Q Consensus 257 ~~~l~~L~~L~l~~n~i~~~i~~~~~~---~l~~L~~L~l~~n~i~~~~~-------------~~~~~l~~L~~L~L~~n 320 (742)
+-+|++|+..++|+|.+....|+.... .-..|.+|.+++|.+.-+.- .-..+-|.|++.+..+|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 344556666666666555444433221 22356666666665431100 11223477888888888
Q ss_pred ccCCCCchhh----hhcCCCCcEEEccccccccceecccccccccCCCccCCccccchhcCCCCcccCC----CCccccC
Q 004617 321 QLTGEIPEHL----AVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP----IPVEFCQ 392 (742)
Q Consensus 321 ~l~~~~~~~~----~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~ 392 (742)
++. ..+... +..-.+|+++.+..|.|... .++......+..+.+|+.||+++|.++.. ...++..
T Consensus 168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpe------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPE------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcc------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 886 555432 22224778888877776531 00001112234567778888888776643 3445666
Q ss_pred CCCCcEEEcCCccCcc
Q 004617 393 LYSLQILDISDNNISG 408 (742)
Q Consensus 393 l~~L~~L~L~~n~i~~ 408 (742)
++.|+.|.+.+|-++.
T Consensus 241 W~~lrEL~lnDClls~ 256 (388)
T COG5238 241 WNLLRELRLNDCLLSN 256 (388)
T ss_pred cchhhhccccchhhcc
Confidence 6777788777776653
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=5.5e-07 Score=76.01 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=62.4
Q ss_pred cccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEecC
Q 004617 546 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 625 (742)
Q Consensus 546 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~ 625 (742)
.++.+++++|.|. .+|+.+..++.|+.|+++.|.+. ..|..+..+.++..|+..+|.+.. +|..+.--+..-..++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhc
Confidence 5677777788777 45666888999999999999888 445666668888899998888874 33333222333445667
Q ss_pred CCccccccccc
Q 004617 626 YNNLSGEILEW 636 (742)
Q Consensus 626 ~N~l~~~~~~~ 636 (742)
++||.+.++..
T Consensus 155 nepl~~~~~~k 165 (177)
T KOG4579|consen 155 NEPLGDETKKK 165 (177)
T ss_pred CCcccccCccc
Confidence 78888877653
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.3e-05 Score=54.76 Aligned_cols=36 Identities=31% Similarity=0.588 Sum_probs=19.6
Q ss_pred CCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCC
Q 004617 54 SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID 91 (742)
Q Consensus 54 ~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~ 91 (742)
+|++|++++|+|+ .+| ..++.|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~-~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLP-PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHG-GHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccC-chHhCCCCCCEEEecCCCCC
Confidence 4556666666655 455 34566666666666665555
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=3.3e-05 Score=70.18 Aligned_cols=107 Identities=27% Similarity=0.252 Sum_probs=63.8
Q ss_pred CCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccCCC
Q 004617 285 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 364 (742)
Q Consensus 285 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~ 364 (742)
..+...+|+++|.+... +.|..++.|.+|.+.+|+|+ .+...+..-+++|+.|.|.+|.+.+.-|+ .
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl----------~ 107 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDL----------D 107 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhc----------c
Confidence 34556667777766533 34666677777777777776 66666655566777777777766642111 1
Q ss_pred ccCCccccchhcCCCCcccCCCC---ccccCCCCCcEEEcCCc
Q 004617 365 WLGNLTWLIHIIMPENHLEGPIP---VEFCQLYSLQILDISDN 404 (742)
Q Consensus 365 ~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~~n 404 (742)
.+..|+.|++|.+-+|.....-- ..+..+++|+.||+.+-
T Consensus 108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 24456666666666665543211 23556777777777653
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.5e-05 Score=89.70 Aligned_cols=104 Identities=29% Similarity=0.461 Sum_probs=72.8
Q ss_pred CCCCEEeCCCCc-CCccccccc-cCCCCCCEEeCCCCCCCC-cCChhhcCCCCCCCEEECCCCCCCC------Cccccee
Q 004617 29 NNLKMLNLSGNS-FNNTILSSL-THLSSLRSLNLNGNSLEG-SIDVKEFDSLRDLEELDIGENKIDK------FVVSKEL 99 (742)
Q Consensus 29 ~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~i~~-~i~~~~~~~l~~L~~L~Ls~n~l~~------l~~L~~L 99 (742)
.+|++||+++.. +..-.+..+ ..+|+|+.|.+++-.+.. .+. ....++|+|.+||+|+.++++ +++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 478888888764 333344444 357899999988876642 122 345678899999999888774 7788888
Q ss_pred ecCCCcceeccCHhhhcCCCCcCEEEccCCCCCC
Q 004617 100 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN 133 (742)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 133 (742)
.+.+-.+...-.-..+.++++|++||+|..+...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence 8887777754444467788888888888766543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=3.1e-06 Score=71.57 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=39.6
Q ss_pred CcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCcEEE
Q 004617 262 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 341 (742)
Q Consensus 262 ~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 341 (742)
.|+..++++|.+. .+|+.+...++.++.|++.+|.|+ .+|..+..++.|+.|+++.|.+. ..|.-++. +.++-.|+
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLD 129 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHhc
Confidence 3444455555554 455554444445555555555554 23444555555555555555554 44444442 44444444
Q ss_pred ccccc
Q 004617 342 LSNNS 346 (742)
Q Consensus 342 L~~n~ 346 (742)
..+|.
T Consensus 130 s~~na 134 (177)
T KOG4579|consen 130 SPENA 134 (177)
T ss_pred CCCCc
Confidence 44443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=4e-05 Score=52.44 Aligned_cols=36 Identities=42% Similarity=0.703 Sum_probs=16.5
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCCEEECcCCccc
Q 004617 570 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 606 (742)
Q Consensus 570 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 606 (742)
+|++|++++|+|+.+ |..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 445555555555533 223455555555555555544
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.64 E-value=0.0001 Score=65.06 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=39.2
Q ss_pred HhcCCCCCEEecCCccccccCccCCCCCCCcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccCCCCC
Q 004617 233 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFL 312 (742)
Q Consensus 233 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 312 (742)
|.++.+|+.+.+.+ .+..+....|.++++|+.+++.++ +. .++...+...++++.+.+.. .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 34444555555442 344444445555555555555443 33 44444444444555555543 3333334445555555
Q ss_pred CEEEccccccCCCCchhhhhcCCCCcEEEc
Q 004617 313 QLLDLSNNQLTGEIPEHLAVGCVNLQFLML 342 (742)
Q Consensus 313 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 342 (742)
+.+++..+ +. .++...|.++ +|+.+.+
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE-
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEEE
Confidence 55555443 33 4444444443 4444443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=0.00011 Score=66.75 Aligned_cols=99 Identities=23% Similarity=0.333 Sum_probs=59.5
Q ss_pred CCCEEeCCCCcCCcccccccc-CCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCC--------Ccccceee
Q 004617 30 NLKMLNLSGNSFNNTILSSLT-HLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK--------FVVSKELY 100 (742)
Q Consensus 30 ~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~--------l~~L~~L~ 100 (742)
.=+.+||.+.++..+.. ++ -+.+...+||+.|.+. .++ .|..++.|.+|.|++|+|+. +++|+.|.
T Consensus 20 ~e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI 94 (233)
T ss_pred cccccccccccccchhh--ccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence 34556666666553322 21 2346667777777775 433 57777777778777777763 45566666
Q ss_pred cCCCcceeccCHhhhcCCCCcCEEEccCCCCCC
Q 004617 101 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN 133 (742)
Q Consensus 101 l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 133 (742)
+.+|.+..--...-+..|+.|++|.+-+|+++.
T Consensus 95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 666655422222235666777777777776654
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.56 E-value=0.00021 Score=63.04 Aligned_cols=122 Identities=21% Similarity=0.280 Sum_probs=70.9
Q ss_pred ccCCCCCCEEEccCCCCCCCCchhHHhcCCCCCEEecCCccccccCccCCCCCCCcCEEEcccCcCcccCCchhhccCCC
Q 004617 208 LYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPS 287 (742)
Q Consensus 208 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~ 287 (742)
+..+++|+.+.+.. .+. .++...|.++++++.+.+.++ +.......|..+++++.+.+.+ .+. .++...+...++
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 45566788887764 333 355555678888999999874 7777778888998899999976 554 677777777889
Q ss_pred ccEEEccCCcCcccCCccccCCCCCCEEEccccccCCCCchhhhhcCCCCc
Q 004617 288 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ 338 (742)
Q Consensus 288 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 338 (742)
++.+++..+ +..+....|.+. +|+.+.+.. .+. .++...|.++++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 999999775 666677788887 899999886 555 78888888887774
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=3.1e-05 Score=87.18 Aligned_cols=94 Identities=26% Similarity=0.338 Sum_probs=53.8
Q ss_pred CCCCEEECCCCCCCC----------CcccceeecCCCcceeccCHhhhcCCCCcCEEEccCCCCCC------CCCCCEEe
Q 004617 78 RDLEELDIGENKIDK----------FVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN------LVVPQELR 141 (742)
Q Consensus 78 ~~L~~L~Ls~n~l~~----------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~L~~L~ 141 (742)
.+|++||+++...-. +|.|+.|.+++-.+...--.....++++|..||+|+.+++. +++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 467777777654221 66677666666554321111245677778888888777664 45555555
Q ss_pred cCCCccccccCcccccCCCCCcEEEccCCc
Q 004617 142 LSDNHFRIPISLEPLFNHSRLKIFHAKNNQ 171 (742)
Q Consensus 142 l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 171 (742)
+.+-.+........+.++++|+.||+|...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 555444433334455666666666666543
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.49 E-value=1e-05 Score=81.38 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=8.1
Q ss_pred cCCCCcEEEccccccc
Q 004617 333 GCVNLQFLMLSNNSLK 348 (742)
Q Consensus 333 ~l~~L~~L~L~~n~~~ 348 (742)
++..|..+.|++++..
T Consensus 399 ~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLI 414 (483)
T ss_pred cccccceeeecCCCCc
Confidence 3445555555555543
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.37 E-value=1.7e-05 Score=79.85 Aligned_cols=157 Identities=19% Similarity=0.079 Sum_probs=98.3
Q ss_pred CccceEEEeecCCCCCCccChhc-cCCCCCCEEEccCCC-CCCCCchhHHhcCCCCCEEecCCccccccC--ccCCCCCC
Q 004617 186 NFQLQSLSLSSSYGDGVTFPKFL-YHQHDLEYVRLSHIK-MNGEFPNWLLENNTKLATLFLVNDSLAGPF--WLPIHSHK 261 (742)
Q Consensus 186 ~~~L~~L~L~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~ 261 (742)
...++.+..++....+......+ .++++|+.+.+++|+ +++.....+..+++.|+.+++.++...... ...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 44677777733333333333334 367889999999885 666666677778899999999888654322 22334678
Q ss_pred CcCEEEcccCcCcccC----CchhhccCCCccEEEccCCcCcc-cCCccccCCCCCCEEEccccccCCCCc-hhhhhcCC
Q 004617 262 RLGILDISNNNIRGHI----PVEIGDVLPSLYVFNISMNALDG-SIPSSFGNMKFLQLLDLSNNQLTGEIP-EHLAVGCV 335 (742)
Q Consensus 262 ~L~~L~l~~n~i~~~i----~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~ 335 (742)
.|+.+.++++.....- -.........++.+.++++.... ..-..+..+++|+.+++.+++-...-+ ..+-..+|
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 9999999988643111 01111235678999999987542 223445677899999998876431222 22233677
Q ss_pred CCcEEEc
Q 004617 336 NLQFLML 342 (742)
Q Consensus 336 ~L~~L~L 342 (742)
++++..+
T Consensus 453 ~i~v~a~ 459 (483)
T KOG4341|consen 453 NIKVHAY 459 (483)
T ss_pred cceehhh
Confidence 7776654
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.00091 Score=69.40 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=50.8
Q ss_pred ccCCCCCcEEEcCCccCcccCCCCCCCCCccEEEccCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCCC-cCcc
Q 004617 390 FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHN-NLEG 468 (742)
Q Consensus 390 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 468 (742)
+..+.+++.|++++|.++... -.+.+|++|.++++.--. .+|+.+. ++|+.|++++| .+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLt-------------sLP~~LP--~nLe~L~Ls~Cs~L~- 108 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLT-------------TLPGSIP--EGLEKLTVCHCPEIS- 108 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcc-------------cCCchhh--hhhhheEccCccccc-
Confidence 455788999999999887553 236689999888754211 3333332 57899999988 554
Q ss_pred CCcccccCCCCCCEEEcCCCee
Q 004617 469 EVPVQLCELNQLQLLDLSNNSL 490 (742)
Q Consensus 469 ~~~~~~~~l~~L~~L~L~~n~l 490 (742)
..| .+|+.|+++.+..
T Consensus 109 sLP------~sLe~L~L~~n~~ 124 (426)
T PRK15386 109 GLP------ESVRSLEIKGSAT 124 (426)
T ss_pred ccc------cccceEEeCCCCC
Confidence 233 3578888876553
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.19 E-value=0.0014 Score=68.10 Aligned_cols=54 Identities=13% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCCccEEEccCcccccccccccCCcccCCCCChhhhcCCCCCEEEcCCCcCccCCcccccCCCCCCEEEcCCC
Q 004617 416 PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 488 (742)
Q Consensus 416 ~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 488 (742)
+..++.|++++|.++ .+|. + -++|+.|.++++.--...|..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~--------------sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE--------------SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc--------------ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 566777777776554 2231 1 1357778877753323444433 246788888777
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.00022 Score=68.02 Aligned_cols=85 Identities=22% Similarity=0.318 Sum_probs=48.2
Q ss_pred CCCCCEEeCCCCcCCccccccccCCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCCCcccceeecCCCcce
Q 004617 28 LNNLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFK 107 (742)
Q Consensus 28 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~~~ 107 (742)
+.+.+.|+.-+|.+++|.- ...++.|+.|.||-|+|+ .+. .|..+++|++|.|..|.|.++.
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sld------------- 79 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLD------------- 79 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHH-------------
Confidence 3455556666665554321 234556666666666665 332 4555666666666655554211
Q ss_pred eccCHhhhcCCCCcCEEEccCCCCCC
Q 004617 108 GTLDIREFDSFNNLEVLDMSYNKIDN 133 (742)
Q Consensus 108 ~~~~~~~~~~l~~L~~L~Ls~n~l~~ 133 (742)
....+.++++|+.|.|..|.-.+
T Consensus 80 ---EL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 80 ---ELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred ---HHHHHhcCchhhhHhhccCCccc
Confidence 11246788888888888887543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00019 Score=68.39 Aligned_cols=87 Identities=22% Similarity=0.170 Sum_probs=59.6
Q ss_pred CCCCCEEEccccccCCCCchhhhhcCCCCcEEEccccccccceecccccccccCCCccCCccccchhcCCCCcccCCC-C
Q 004617 309 MKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI-P 387 (742)
Q Consensus 309 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~ 387 (742)
+.+.+.|++.++.+. .| .++..|+.|++|.|+-|+|+. -..+..|+.|++|+|..|.|.... -
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss-------------L~pl~rCtrLkElYLRkN~I~sldEL 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS-------------LAPLQRCTRLKELYLRKNCIESLDEL 81 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc-------------chhHHHHHHHHHHHHHhcccccHHHH
Confidence 345666777777766 33 345577778888877777764 345677888888888888776432 2
Q ss_pred ccccCCCCCcEEEcCCccCcccCC
Q 004617 388 VEFCQLYSLQILDISDNNISGSLP 411 (742)
Q Consensus 388 ~~~~~l~~L~~L~L~~n~i~~~~~ 411 (742)
..+.++++|+.|.|..|...+..+
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccc
Confidence 346788888888888887765443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0023 Score=61.14 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=18.9
Q ss_pred CCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCC
Q 004617 51 HLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGEN 88 (742)
Q Consensus 51 ~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n 88 (742)
....|+.|++.+..++ ++ ..|-.+++|++|.+|.|
T Consensus 41 ~~~~le~ls~~n~glt-t~--~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT-TL--TNFPKLPKLKKLELSDN 75 (260)
T ss_pred cccchhhhhhhcccee-ec--ccCCCcchhhhhcccCC
Confidence 3445555555555554 22 24555666666666655
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.73 E-value=0.0051 Score=58.85 Aligned_cols=97 Identities=22% Similarity=0.320 Sum_probs=52.9
Q ss_pred CCCCCEEeCCCCcCCccccccccCCCCCCEEeCCCC--CCCCcCChhhcCCCCCCCEEECCCCCCCC---------Cccc
Q 004617 28 LNNLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGN--SLEGSIDVKEFDSLRDLEELDIGENKIDK---------FVVS 96 (742)
Q Consensus 28 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~---------l~~L 96 (742)
+..|+.|++.+..++.. ..|..+++|++|.+|.| ++.+.++ .....+|+|++|+|+.|++.. +.+|
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34444444444444322 12445666666677666 4443333 233344667777777666552 4456
Q ss_pred ceeecCCCcceeccCH--hhhcCCCCcCEEEcc
Q 004617 97 KELYLDDTGFKGTLDI--REFDSFNNLEVLDMS 127 (742)
Q Consensus 97 ~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~Ls 127 (742)
..|++.+|..++.-.. ..|.-+++|++||-.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 6666667765542222 357777888877643
No 69
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.76 E-value=0.022 Score=71.64 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=51.3
Q ss_pred ECcCCcccccCCccccCCCCCCeEecCCCccccccc-ccccccccCCcccccCCcCCCCCCCCCCCCCCCCCCccCCCCC
Q 004617 599 DLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL-EWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNER 677 (742)
Q Consensus 599 ~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~~~~~~~~~n~~~c~~~~~~C~~~~~~~~~~~~~~~ 677 (742)
||++|+|+.+.+..|..+++|+.|+|++|||.|.|. .|+.+|..-...... .+ ....|..|...+++++.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~-~~-----~~i~CasP~~LrG~~L~~l~ 74 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVR-QP-----EAALCAGPGALAGQPLLGIP 74 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcccc-CC-----cccCCCCChHHCCCCcccCC
Confidence 688999998888888889999999999999999995 344444322211110 00 01258888888888776655
Q ss_pred CCC
Q 004617 678 DDN 680 (742)
Q Consensus 678 ~~~ 680 (742)
.+.
T Consensus 75 ~~d 77 (2740)
T TIGR00864 75 LLD 77 (2740)
T ss_pred ccc
Confidence 443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.92 E-value=0.011 Score=65.54 Aligned_cols=64 Identities=23% Similarity=0.087 Sum_probs=34.6
Q ss_pred CCCCCCEEEccCCC-CCCCCchhHHhcCCCCCEEecCCcc-ccccCccC-CCCCCCcCEEEcccCcC
Q 004617 210 HQHDLEYVRLSHIK-MNGEFPNWLLENNTKLATLFLVNDS-LAGPFWLP-IHSHKRLGILDISNNNI 273 (742)
Q Consensus 210 ~~~~L~~L~l~~~~-~~~~~~~~l~~~l~~L~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~n~i 273 (742)
.+++|+.++++.+. +++..-..+...|++|+.|.+.+|. ++...... ...++.|+.|+++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34566666666665 4544444444446666666666555 33322222 23455666666665553
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.65 E-value=0.026 Score=31.87 Aligned_cols=12 Identities=58% Similarity=0.697 Sum_probs=4.9
Q ss_pred CCEEEcccccCC
Q 004617 571 IQTLNLSYNNLT 582 (742)
Q Consensus 571 L~~L~Ls~n~l~ 582 (742)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.01 E-value=0.042 Score=31.04 Aligned_cols=20 Identities=45% Similarity=0.640 Sum_probs=10.8
Q ss_pred CCCEEECcCCcccccCCcccc
Q 004617 594 HIESLDLSYNKLNGKIPHQLV 614 (742)
Q Consensus 594 ~L~~L~Ls~N~i~~~~~~~l~ 614 (742)
+|++||+++|+++ .+|..|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666666 4444343
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.66 E-value=0.019 Score=63.53 Aligned_cols=185 Identities=18% Similarity=0.081 Sum_probs=84.1
Q ss_pred CCCCCEEEccCCC-CCCCCchhHHhcCCCCCEEecCCc-cccccC----ccCCCCCCCcCEEEcccCc-CcccCCchhhc
Q 004617 211 QHDLEYVRLSHIK-MNGEFPNWLLENNTKLATLFLVND-SLAGPF----WLPIHSHKRLGILDISNNN-IRGHIPVEIGD 283 (742)
Q Consensus 211 ~~~L~~L~l~~~~-~~~~~~~~l~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~n~-i~~~i~~~~~~ 283 (742)
++.|+.+.+.++. ++...-..+...++.|+.|+++++ ...... ......+++|+.|+++.+. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4556666655553 221111223345666666666552 111111 1122344666666666665 44222223333
Q ss_pred cCCCccEEEccCCc-Cccc-CCccccCCCCCCEEEccccccCCC--CchhhhhcCCCCcEEEccccc---cccceecccc
Q 004617 284 VLPSLYVFNISMNA-LDGS-IPSSFGNMKFLQLLDLSNNQLTGE--IPEHLAVGCVNLQFLMLSNNS---LKEGLYLTNN 356 (742)
Q Consensus 284 ~l~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~---~~~~l~l~~n 356 (742)
.+++|++|.+.++. ++.. +......+++|++|+++++..... +.. ...++++|+.|.+.... ..+.+.+...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA-LLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH-HHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 35567776665554 3321 111223456677777776654311 111 23345555554433332 1222222221
Q ss_pred ccc---ccCCCccCCccccchhcCCCCcccCCC-CccccCCCCC
Q 004617 357 SLS---GNIPGWLGNLTWLIHIIMPENHLEGPI-PVEFCQLYSL 396 (742)
Q Consensus 357 ~~~---~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L 396 (742)
... .........+++++.+.+..+...... ...+.+++.|
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 110 122234567788888888777633322 2345556665
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.71 E-value=0.13 Score=30.34 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=10.6
Q ss_pred CCCCEEEcccccCCCCCCccc
Q 004617 569 TRIQTLNLSYNNLTGLIPSTF 589 (742)
Q Consensus 569 ~~L~~L~Ls~n~l~~~~~~~~ 589 (742)
++|++|+|++|+|+.++++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555554444444
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.71 E-value=0.13 Score=30.34 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=10.6
Q ss_pred CCCCEEEcccccCCCCCCccc
Q 004617 569 TRIQTLNLSYNNLTGLIPSTF 589 (742)
Q Consensus 569 ~~L~~L~Ls~n~l~~~~~~~~ 589 (742)
++|++|+|++|+|+.++++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555554444444
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.63 E-value=0.24 Score=29.24 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=17.5
Q ss_pred CCCCCEEEccccccCCCCchhhhh
Q 004617 309 MKFLQLLDLSNNQLTGEIPEHLAV 332 (742)
Q Consensus 309 l~~L~~L~L~~n~l~~~~~~~~~~ 332 (742)
+++|+.|+|++|++. .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357788888888887 78877763
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.63 E-value=0.24 Score=29.24 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=17.5
Q ss_pred CCCCCEEEccccccCCCCchhhhh
Q 004617 309 MKFLQLLDLSNNQLTGEIPEHLAV 332 (742)
Q Consensus 309 l~~L~~L~L~~n~l~~~~~~~~~~ 332 (742)
+++|+.|+|++|++. .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357788888888887 78877763
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.56 E-value=0.0013 Score=70.97 Aligned_cols=61 Identities=31% Similarity=0.374 Sum_probs=38.6
Q ss_pred ccEEEccCCcCCCC----CcccccCc-CCCCEEEcccccCCCCCC----ccccCCCCCCEEECcCCcccc
Q 004617 547 LSGLYLSCNKLIGH----IPPQIGNL-TRIQTLNLSYNNLTGLIP----STFSNLKHIESLDLSYNKLNG 607 (742)
Q Consensus 547 L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~i~~ 607 (742)
+..|++.+|.+.+. ..+.+..+ ..+++++++.|.++.... ..+..++.++++.+++|++..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 55578888877644 22234444 566788888887775533 334456677778888877754
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.09 E-value=0.0019 Score=69.83 Aligned_cols=42 Identities=33% Similarity=0.358 Sum_probs=28.1
Q ss_pred hhcC-CCCCEEEcCCCcCccCC----cccccCCCCCCEEEcCCCeee
Q 004617 450 IGEL-SQLSHLILGHNNLEGEV----PVQLCELNQLQLLDLSNNSLH 491 (742)
Q Consensus 450 ~~~l-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~ 491 (742)
+..+ +.+++++++.|+++..- ...+..++.++.+.+..|++.
T Consensus 257 l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 257 LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3444 56778888888877432 344556677888888887765
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.43 E-value=0.24 Score=25.91 Aligned_cols=11 Identities=73% Similarity=0.975 Sum_probs=3.6
Q ss_pred CCEEEcccccc
Q 004617 312 LQLLDLSNNQL 322 (742)
Q Consensus 312 L~~L~L~~n~l 322 (742)
|++|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444444
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.83 E-value=0.021 Score=53.48 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=66.3
Q ss_pred hhhhcCCCCCCEEeCCCCcCCccccccccCCCCCCEEeCCCCCCCCcCChhhcCCCCCCCEEECCCCCCCCCcccceeec
Q 004617 22 IERLSRLNNLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYL 101 (742)
Q Consensus 22 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l 101 (742)
+..+..+...+.||++.|.+... ...|+-+..|..|+++.|.+. ..| ..+..+..++.+++.+|+.+
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~-~d~~q~~e~~~~~~~~n~~~---------- 101 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLP-KDAKQQRETVNAASHKNNHS---------- 101 (326)
T ss_pred hhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hCh-hhHHHHHHHHHHHhhccchh----------
Confidence 33456667778888888877643 334666777777888888876 566 67777777788887777665
Q ss_pred CCCcceeccCHhhhcCCCCcCEEEccCCCCC
Q 004617 102 DDTGFKGTLDIREFDSFNNLEVLDMSYNKID 132 (742)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 132 (742)
..|. .+...++++++++-+|.+.
T Consensus 102 -------~~p~-s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 102 -------QQPK-SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred -------hCCc-cccccCCcchhhhccCcch
Confidence 6676 8888999999998888764
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.36 E-value=0.085 Score=48.65 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=40.5
Q ss_pred CCEEecCCccccccCccCCCCCCCcCEEEcccCcCc-ccCCchhhccCCCccEEEccCC-cCcccCCccccCCCCCCEEE
Q 004617 239 LATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIR-GHIPVEIGDVLPSLYVFNISMN-ALDGSIPSSFGNMKFLQLLD 316 (742)
Q Consensus 239 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~~i~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~ 316 (742)
++.++-+++.|..+..+.+..++.++.|.+.++.-- +.--..+....++|+.|+++.| +|+.-.-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344555555555555555555555555555554311 0001112223457777777766 35543333455566666666
Q ss_pred ccc
Q 004617 317 LSN 319 (742)
Q Consensus 317 L~~ 319 (742)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 653
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.00 E-value=0.25 Score=45.69 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=51.3
Q ss_pred CCCEEeCCCCcCCccccccccCCCCCCEEeCCCCCCCCcCChhhcC----CCCCCCEEECCCC-CCCCCcccceeecCCC
Q 004617 30 NLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFD----SLRDLEELDIGEN-KIDKFVVSKELYLDDT 104 (742)
Q Consensus 30 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~----~l~~L~~L~Ls~n-~l~~l~~L~~L~l~~~ 104 (742)
.++.+|-+++.|..+..+.+.+++.++.|.+.+|+- +....+. ..++|+.|+|+.| +|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~---~dD~~L~~l~~~~~~L~~L~lsgC~rIT------------- 165 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY---FDDWCLERLGGLAPSLQDLDLSGCPRIT------------- 165 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccc---hhhHHHHHhcccccchheeeccCCCeec-------------
Confidence 356688888888888888888888888888888862 3323332 3456666666644 233
Q ss_pred cceeccCHhhhcCCCCcCEEEccC
Q 004617 105 GFKGTLDIREFDSFNNLEVLDMSY 128 (742)
Q Consensus 105 ~~~~~~~~~~~~~l~~L~~L~Ls~ 128 (742)
.-....+.++++|+.|.+.+
T Consensus 166 ----~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 166 ----DGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ----hhHHHHHHHhhhhHHHHhcC
Confidence 22222566777777777665
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.50 E-value=0.048 Score=51.16 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=70.7
Q ss_pred cccccEEEccCCcCCCCCcccccCcCCCCEEEcccccCCCCCCccccCCCCCCEEECcCCcccccCCccccCCCCCCeEe
Q 004617 544 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFS 623 (742)
Q Consensus 544 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 623 (742)
....+.||++.|++. .....|+-++.+..|+++.|.+. ..|.-++....+..+++.+|..+ ..|..+...++++.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 346788999999876 34556788889999999999998 55677888888899999999888 7888999999999999
Q ss_pred cCCCccc
Q 004617 624 VAYNNLS 630 (742)
Q Consensus 624 l~~N~l~ 630 (742)
.-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999875
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.14 E-value=0.53 Score=27.11 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=8.2
Q ss_pred CCCCEEeCCCCcCCccc
Q 004617 29 NNLKMLNLSGNSFNNTI 45 (742)
Q Consensus 29 ~~L~~L~Ls~n~i~~~~ 45 (742)
++|++|++++|.|+...
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45566666666555433
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.63 E-value=2.2 Score=25.18 Aligned_cols=14 Identities=57% Similarity=0.911 Sum_probs=8.4
Q ss_pred CCCCEEECCCCCCC
Q 004617 78 RDLEELDIGENKID 91 (742)
Q Consensus 78 ~~L~~L~Ls~n~l~ 91 (742)
.+|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666554
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.30 E-value=3.4 Score=24.33 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=9.8
Q ss_pred CCCEEECCCCCCCCCcc
Q 004617 79 DLEELDIGENKIDKFVV 95 (742)
Q Consensus 79 ~L~~L~Ls~n~l~~l~~ 95 (742)
+|+.|+.++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666664443
No 88
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=69.82 E-value=5.1 Score=26.36 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=10.5
Q ss_pred EEeeehhhhhhHhhhhhhhhcchhhH
Q 004617 689 ITFTTSYVIVIFAIVIILYVNSYWRR 714 (742)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (742)
+++++++-+++++++..++++.+|||
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEec
Confidence 34444444444333333333334443
No 89
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=60.67 E-value=16 Score=29.93 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=9.9
Q ss_pred EEEeeehhhhhhHhhhhhhhh
Q 004617 688 FITFTTSYVIVIFAIVIILYV 708 (742)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~ 708 (742)
++++++++++++.++++++++
T Consensus 68 iagi~vg~~~~v~~lv~~l~w 88 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLCW 88 (96)
T ss_pred EEEEEeehhhHHHHHHHHHhh
Confidence 445555555444444444443
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.40 E-value=4.9 Score=24.17 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=8.9
Q ss_pred CCCCEEeCCCCcCCc
Q 004617 29 NNLKMLNLSGNSFNN 43 (742)
Q Consensus 29 ~~L~~L~Ls~n~i~~ 43 (742)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=56.06 E-value=43 Score=35.72 Aligned_cols=63 Identities=24% Similarity=0.316 Sum_probs=29.5
Q ss_pred CCcCEEEcccCcCcccCCchhhccCCCccEEEccCCcCcccCCccccC------CCCCCEEEccccccCCCCchh
Q 004617 261 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGN------MKFLQLLDLSNNQLTGEIPEH 329 (742)
Q Consensus 261 ~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~ 329 (742)
+.+++++++.|.+....|..+... .--+.++.|..+.. .|.. -..+.+++++.|.....+|..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p---~~pl~lr~c~lssk---fis~l~~qsg~~~lteldls~n~~Kddip~~ 233 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQP---GNPLSLRVCELSSK---FISKLLIQSGRLWLTELDLSTNGGKDDIPRT 233 (553)
T ss_pred chhhhhccCCCcccccCCccccCC---CCccchhhhhhhhh---HHHHhhhhhccccccccccccCCCCccchhH
Confidence 445566666666655555443321 11134444443321 1111 123566777777666555543
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=55.07 E-value=8.9 Score=49.74 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=23.0
Q ss_pred EcccccCCCCCCccccCCCCCCEEECcCCcccccC
Q 004617 575 NLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 609 (742)
Q Consensus 575 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 609 (742)
||++|+|+.+.+..|..+++|+.|+|++|++.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccc
Confidence 46666666666666666666777777777666543
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.59 E-value=6.1 Score=42.61 Aligned_cols=61 Identities=25% Similarity=0.196 Sum_probs=28.4
Q ss_pred ccccEEEccCCcCCCCCc--ccccCcCCCCEEEcccc--cCCCCC-CccccCCCCCCEEECcCCccc
Q 004617 545 SLLSGLYLSCNKLIGHIP--PQIGNLTRIQTLNLSYN--NLTGLI-PSTFSNLKHIESLDLSYNKLN 606 (742)
Q Consensus 545 ~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n--~l~~~~-~~~~~~l~~L~~L~Ls~N~i~ 606 (742)
+.+..+.|++|++..... ..-...++|++|+|++| .+.... -+.+++ ..|++|.+.+|++.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 345566666666643311 11123356666666666 333221 112222 24566666666654
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.40 E-value=10 Score=41.00 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=9.8
Q ss_pred CCCCCCEEECCCCCCC
Q 004617 76 SLRDLEELDIGENKID 91 (742)
Q Consensus 76 ~l~~L~~L~Ls~n~l~ 91 (742)
+.+.+..++|++|++.
T Consensus 216 n~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY 231 (585)
T ss_pred CCcceeeeecccchhh
Confidence 4456666666666654
No 95
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=42.68 E-value=11 Score=33.33 Aligned_cols=15 Identities=13% Similarity=-0.029 Sum_probs=8.0
Q ss_pred eEEEeeehhhhhhHh
Q 004617 687 FFITFTTSYVIVIFA 701 (742)
Q Consensus 687 ~~~~~~~~~~~~~~~ 701 (742)
.+|++++++.+.+++
T Consensus 50 IVIGvVVGVGg~ill 64 (154)
T PF04478_consen 50 IVIGVVVGVGGPILL 64 (154)
T ss_pred EEEEEEecccHHHHH
Confidence 456666665444433
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=35.85 E-value=1.8e+02 Score=31.30 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=11.5
Q ss_pred CCCCCcCEEEcccCcCc
Q 004617 258 HSHKRLGILDISNNNIR 274 (742)
Q Consensus 258 ~~l~~L~~L~l~~n~i~ 274 (742)
..-+.++.|++++|...
T Consensus 437 ~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 437 LSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccccccccCCCcc
Confidence 34566777788777765
No 97
>PF15102 TMEM154: TMEM154 protein family
Probab=31.76 E-value=19 Score=31.60 Aligned_cols=8 Identities=13% Similarity=-0.076 Sum_probs=3.1
Q ss_pred hhhcchhh
Q 004617 706 LYVNSYWR 713 (742)
Q Consensus 706 ~~~~~~~~ 713 (742)
+.+++|||
T Consensus 79 v~~~kRkr 86 (146)
T PF15102_consen 79 VIYYKRKR 86 (146)
T ss_pred eeEEeecc
Confidence 33333343
No 98
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.64 E-value=51 Score=31.01 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=10.9
Q ss_pred eEEEeeehhhhhhHhhhhhhhh
Q 004617 687 FFITFTTSYVIVIFAIVIILYV 708 (742)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~ 708 (742)
++++++.|++++++++++++++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHH
Confidence 4455555555555444444444
No 99
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.20 E-value=12 Score=32.06 Aligned_cols=17 Identities=12% Similarity=0.299 Sum_probs=7.5
Q ss_pred EEeeehhhhhhHhhhhh
Q 004617 689 ITFTTSYVIVIFAIVII 705 (742)
Q Consensus 689 ~~~~~~~~~~~~~~~~~ 705 (742)
+++++++++++++++++
T Consensus 67 ~~Ii~gv~aGvIg~Ill 83 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILL 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHH
Confidence 34444444444443333
No 100
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=27.10 E-value=48 Score=19.28 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=8.0
Q ss_pred CCCCCEEeCCCCC
Q 004617 52 LSSLRSLNLNGNS 64 (742)
Q Consensus 52 l~~L~~L~Ls~n~ 64 (742)
+++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3566666666664
No 101
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=25.38 E-value=48 Score=28.18 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhhhcchhhHHHH
Q 004617 704 IILYVNSYWRRRWF 717 (742)
Q Consensus 704 ~~~~~~~~~~~~~~ 717 (742)
+++++.+.+|++.|
T Consensus 97 g~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 97 GFLVWRRCRRREKF 110 (129)
T ss_dssp --------------
T ss_pred HHHHHhhhhccccC
Confidence 33444333444443
No 102
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.95 E-value=38 Score=34.25 Aligned_cols=13 Identities=38% Similarity=0.818 Sum_probs=5.6
Q ss_pred hhhhhhhcchhhH
Q 004617 702 IVIILYVNSYWRR 714 (742)
Q Consensus 702 ~~~~~~~~~~~~~ 714 (742)
|++++|+.+++||
T Consensus 271 IMvIIYLILRYRR 283 (299)
T PF02009_consen 271 IMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
Done!