Query 004617
Match_columns 742
No_of_seqs 314 out of 4028
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 18:22:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004617.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1915-1918//hhsearch_pdb/004617hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 510.2 46.1 626 23-671 71-757 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 463.7 43.8 615 16-658 39-721 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 459.4 43.9 592 29-682 25-671 (680)
4 3j0a_A TOLL-like receptor 5; m 1.0 1 1 441.9 36.6 563 14-682 11-608 (844)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 433.1 44.6 566 31-659 6-627 (680)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 420.8 38.7 546 29-680 33-605 (606)
7 3j0a_A TOLL-like receptor 5; m 1.0 1 1 402.4 42.1 546 32-683 7-601 (844)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 399.8 39.3 551 28-681 31-604 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 391.2 44.7 528 30-658 13-564 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 385.4 37.3 509 30-660 12-564 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=510.24 Aligned_cols=626 Identities=30% Similarity=0.416 Sum_probs=426.8
Q ss_pred HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH--HCCCCCCCCEEECCCCCCC---------
Q ss_conf 10129999979969998578436401159999999969999888867911--1189999999988899899---------
Q 004617 23 ERLSRLNNLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVK--EFDSLRDLEELDIGENKID--------- 91 (742)
Q Consensus 23 ~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~i~~~--~~~~l~~L~~L~Ls~n~l~--------- 91 (742)
+++.+++.|+.++++.+.+.. .+..|..+++|++|+|++|.+++.++ . .+..+++|++|++++|.+.
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred HHHHCCCCCCCCCCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCCCCC-CHHHHHCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 657316802246786888678-70332457889989898985787078-9678727889998989688267747977856
Q ss_pred CCCCCCEEECCCCCCEECCCHHH---HCCCCCCCEEECCCCCCCC------CCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97645466537874200269754---3299986799866898899------99999886387756441493000289998
Q 004617 92 KFVVSKELYLDDTGFKGTLDIRE---FDSFNNLEVLDMSYNKIDN------LVVPQELRLSDNHFRIPISLEPLFNHSRL 162 (742)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 162 (742)
.+++|++|++++|.+.+..+. . +.++++|++|++++|.+.+ +++|+.|++++|.+.+..+. +..+++|
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L 225 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSAL 225 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSC
T ss_pred CCCCCCEEECCCCCCCCCCCH-HHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCC
T ss_conf 388999898979835885871-5566435898898989788034657845478689898928827887711--1269999
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEE
Q ss_conf 68983487564224422447889865109983068889886570002999989998348978788864677518889789
Q 004617 163 KIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATL 242 (742)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L 242 (742)
+.|++++|.+....... +....+|++|++ +++...+..|.. .+++|++|++++|.+++.+|..++..+++|+.|
T Consensus 226 ~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L-s~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRA---ISTCTELKLLNI-SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp CEEECCSSCCCSCHHHH---TTTCSSCCEEEC-CSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred CEEECCCCCCCCCCCHH---HHCCCCCCEEEC-CCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEE
T ss_conf 98979488587816577---744888898989-888665716724--368789897917855772588888446868899
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCC
Q ss_conf 66786454558658778887489991348175238901230598822999007837534892456999-99879731650
Q 004617 243 FLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMK-FLQLLDLSNNQ 321 (742)
Q Consensus 243 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~ 321 (742)
++.+|.+.+..+..+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.
T Consensus 300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCC
T ss_conf 89689677842367755877667789788525737978872488887884847843762309898632277199862787
Q ss_pred CCCCCCHHHHH-CCCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 67988355551-69999489831466535021134424545797647944100230988864487770102878976997
Q 004617 322 LTGEIPEHLAV-GCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILD 400 (742)
Q Consensus 322 l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 400 (742)
+.+.++..... .+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-----------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTG-----------KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEE-----------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCCCHHHHHCCCCCCCEEECCCCCCCC-----------CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 47876766653324776189897784654-----------2487775689879898958846685467774499889898
Q ss_pred CCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCC-----------CCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
Q ss_conf 678407534898777-78755898568503532235-----------467741689888211069998789848983766
Q 004617 401 ISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKR-----------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG 468 (742)
Q Consensus 401 l~~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-----------~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 468 (742)
+++|.+.+..+..+. +++|+.+++++|.+.+..+. ++++|.+.+..|.++..+++|+.|++++|++.+
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 97881547189788287773299901995137588788169989989753995189687688568999989897894337
Q ss_pred CCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC--------------CC-----------CCCC
Q ss_conf 7960025999998997678820002897743663000015889875111--------------11-----------2001
Q 004617 469 EVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKF--------------EI-----------SFFI 523 (742)
Q Consensus 469 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-----------~~~~ 523 (742)
..|..+..+++|+.|++++|++.+.+|..+................... .. ....
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 48877708898998989888468827957860421223201345421111344432222332221001355632320023
Q ss_pred CCCCCCCCCCCCHHEE--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 4998630013300100--22112565279954885888896041376778789832652797898001387988989775
Q 004617 524 EGPQGDFTTKNIAYIY--QGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 601 (742)
Q Consensus 524 ~~~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 601 (742)
......+......... ....++.|+.|++++|++.+.+|..+..+++|+.|+|++|.+++.+|..+.++++|+.|+++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 21100113310046274334033566579785880155587788414157878486880388789678477789989897
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8806544881321899898685578714112566520126679544468868889999899999998976
Q 004617 602 YNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEA 671 (742)
Q Consensus 602 ~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~ 671 (742)
+|++++.+|..+..++.|+.+++++|++++.+|.. .++.++....+.||+.+|+.|+..|.......+.
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~ 757 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYA 757 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC-----
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCCCCHHHHCCCCHHCCCCCCCCCCCCCCCCC
T ss_conf 88023868867757887897879688155608996-0102489777569832108877678887668889
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=463.67 Aligned_cols=615 Identities=25% Similarity=0.351 Sum_probs=447.1
Q ss_pred EEECCCHHHHCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-
Q ss_conf 21001701012999997996999857843---64011599999999699998888679111189999999988899899-
Q 004617 16 FILFAGIERLSRLNNLKMLNLSGNSFNNT---ILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID- 91 (742)
Q Consensus 16 ~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~---~~~~l~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~- 91 (742)
.|.|.++.+- -..++.|+++++.+... .+.++.++++|+.++++.+.+. .++ ..|..+++|++|+|++|.++
T Consensus 39 ~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~ 114 (768)
T 3rgz_A 39 PCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSG 114 (768)
T ss_dssp GGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEE
T ss_pred CCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCC-HHHCCCCCCCEEECCCCCCCC
T ss_conf 7688413878--992789877899867755766965731680224678688867-870-332457889989898985787
Q ss_pred ---------CCCCCCEEECCCCCCEECCCHHHHCCCCCCCEEECCCCCCC-----------CCCCCCEEECCCCCCCCCC
Q ss_conf ---------97645466537874200269754329998679986689889-----------9999998863877564414
Q 004617 92 ---------KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKID-----------NLVVPQELRLSDNHFRIPI 151 (742)
Q Consensus 92 ---------~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~L~~L~l~~~~~~~~~ 151 (742)
.+++|++|++++|.+.+.++...+.++++|++|++++|.++ .++.|+.|++++|.+.+..
T Consensus 115 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 194 (768)
T 3rgz_A 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194 (768)
T ss_dssp EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 07896787278899989896882677479778563889998989798358858715566435898898989788034657
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 93000289998689834875642244224478898651099830688898865700029999899983489787888646
Q 004617 152 SLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNW 231 (742)
Q Consensus 152 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 231 (742)
+ +..+++|+.|++++|.+...... .....+|++|++ +++...+..+..+..+++|++|++++|.+++..+..
T Consensus 195 ~---~~~l~~L~~L~Ls~n~l~~~~~~----l~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 266 (768)
T 3rgz_A 195 D---VSRCVNLEFLDVSSNNFSTGIPF----LGDCSALQHLDI-SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266 (768)
T ss_dssp B---CTTCTTCCEEECCSSCCCSCCCB----CTTCCSCCEEEC-CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC
T ss_pred C---CCCCCCCCEEECCCCCCCCCCCC----CCCCCCCCEEEC-CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf 8---45478689898928827887711----126999998979-488587816577744888898989888665716724
Q ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCC-CCCC
Q ss_conf 77518889789667864545586587788-874899913481752389012305988229990078375348924-5699
Q 004617 232 LLENNTKLATLFLVNDSLAGPFWLPIHSH-KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-FGNM 309 (742)
Q Consensus 232 l~~~l~~L~~L~l~~~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l 309 (742)
.+++|+.|++.+|.+.+..+..+... ++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|.. +..+
T Consensus 267 ---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 267 ---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp ---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred ---CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHC-CCCCCEEECCCCCCCCCCCHHHHHCC
T ss_conf ---36878989791785577258888844686889989689677842367755-87766778978852573797887248
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHCCC-CCCEEECCCCCCCCCEECCCCCCCCCCCCCCCC--CCCCCHHCCCCCCCCCCC
Q ss_conf 99987973165067988355551699-994898314665350211344245457976479--441002309888644877
Q 004617 310 KFLQLLDLSNNQLTGEIPEHLAVGCV-NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN--LTWLIHIIMPENHLEGPI 386 (742)
Q Consensus 310 ~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~l~l~~n~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~~ 386 (742)
++|+.|++++|.+.+.+|..+. .++ +|+.|++++|.+ .+..+..+.. +++|++|++++|.+.+..
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~-~l~~~L~~L~Ls~N~l-----------~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNF-----------SGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHH-HHTTTCSEEECCSSEE-----------EEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred CCCCEEECCCCCCCCCCCHHHH-HHHCCCCEEECCCCCC-----------CCCCCHHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 8887884847843762309898-6322771998627874-----------787676665332477618989778465424
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCC-----------CCCCCCCCCCCCHHHHCCC
Q ss_conf 70102878976997678407534898777-78755898568503532235-----------4677416898882110699
Q 004617 387 PVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKR-----------DLSYNLLNGSIPDWIGELS 454 (742)
Q Consensus 387 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-----------~l~~~~l~~~~~~~~~~l~ 454 (742)
|..+..+++|+.|++++|.+.+..+..+. +++|+.+++++|.+.+..+. ++++|.+.+..|..+.+++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCC
T ss_conf 87775689879898958846685467774499889898978815471897882877732999019951375887881699
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC--CCCC
Q ss_conf 98789848983766796002599999899767882000289774366300001588-98751111120014998--6300
Q 004617 455 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNS-SSLDEKFEISFFIEGPQ--GDFT 531 (742)
Q Consensus 455 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~ 531 (742)
+|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+..++.+...... ....+.+....+..... ....
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCC
T ss_conf 89989753995189687688568999989897894337488777088989989898884688279578604212232013
Q ss_pred ---------CCC-------------CHHE--ECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf ---------133-------------0010--0221125652799548858888960413767787898326527978980
Q 004617 532 ---------TKN-------------IAYI--YQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPS 587 (742)
Q Consensus 532 ---------~~~-------------~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 587 (742)
... .... .....+..+..+++..+.+.+..|..+..+++|+.|+|++|++++..|.
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 45421111344432222332221001355632320023211001133100462743340335665797858801555877
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01387988989775880654488132189989868557871411256652012667954446886888999
Q 004617 588 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 658 (742)
Q Consensus 588 ~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 658 (742)
.+.++++|+.|++++|.+++.+|..+..+++|+.||+++|.+++.+|..+..+..+...++.+|+.....|
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 88414157878486880388789678477789989897880238688677578878978796881556089
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=459.40 Aligned_cols=592 Identities=22% Similarity=0.226 Sum_probs=397.4
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC--------CCCCCEEE
Q ss_conf 9997996999857843640115999999996999988886791111899999999888998999--------76454665
Q 004617 29 NNLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK--------FVVSKELY 100 (742)
Q Consensus 29 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~--------l~~L~~L~ 100 (742)
+++++|++++|.++.+.+.+|.++++|++|++++|.++ .+++..|..+++|++|++++|+++. +++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 88768889899778759788717876758878899648-56977874066768888999856756854530388889898
Q ss_pred CCCCCCEECCCHHHHCCCCCCCEEECCCCCCCC--------CCCCCEEECCCCCCCCCCCCCCC--CCCCCCCEEECCCC
Q ss_conf 378742002697543299986799866898899--------99999886387756441493000--28999868983487
Q 004617 101 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN--------LVVPQELRLSDNHFRIPISLEPL--FNHSRLKIFHAKNN 170 (742)
Q Consensus 101 l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 170 (742)
+++|.+.+ ++...|.++++|++|++++|.+.. +++|+.|++++|.+++ .....+ ..+++|+.+++++|
T Consensus 104 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECTTC
T ss_pred CCCCCCCC-CCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC-CCHHHHHCCCCCCCCEEECCCC
T ss_conf 98996685-396674156788889898995246672111245567779745884365-2978862446663217988898
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHC---CCCCCCCEEECCCCCCCCCCCHHHHHCCC--CCCEEECC
Q ss_conf 56422442244788986510998306888988657000---29999899983489787888646775188--89789667
Q 004617 171 QMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFL---YHQHDLEYVRLSHIKMNGEFPNWLLENNT--KLATLFLV 245 (742)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l~~~l~--~L~~L~l~ 245 (742)
.+....... +....+++.+.+ .++.........+ ...++|+.++++++.+.+..+..+ ..++ +|+.|+++
T Consensus 182 ~l~~~~~~~---~~~l~~L~~L~l-~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~-~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 182 QIKEFSPGC---FHAIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF-LGLKWTNLTMLDLS 256 (680)
T ss_dssp CCCCBCTTG---GGGSSEECEEEC-TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT-GGGGGSCCCEEECT
T ss_pred CCCCCCHHH---HHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH-HCCCCCCCCEEECC
T ss_conf 256558155---532234455430-5664680567778777531510088745774364686675-14676778887787
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC---------CCCCCCCCCCCCCEEE
Q ss_conf 8645455865877888748999134817523890123059882299900783753---------4892456999998797
Q 004617 246 NDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG---------SIPSSFGNMKFLQLLD 316 (742)
Q Consensus 246 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~---------~~~~~~~~l~~L~~L~ 316 (742)
+|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.... .....|..+++|+.|+
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH-CCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 887675680211674105685577885676586562-6788855773633132133333554543865624677788887
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-----------------CCCEECCCCCCCCCCCCCCCCCCCCCHHCCCC
Q ss_conf 3165067988355551699994898314665-----------------35021134424545797647944100230988
Q 004617 317 LSNNQLTGEIPEHLAVGCVNLQFLMLSNNSL-----------------KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPE 379 (742)
Q Consensus 317 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-----------------~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 379 (742)
+++|.+. .++...|.++++|++|++++|.+ .+.+++++|.+.+..+..+..+++|++|++++
T Consensus 336 l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 336 MEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp CCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCCCC-CCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCC
T ss_conf 9898268-788557406568728988798014432353220245568676688999977767754420778888886778
Q ss_pred CCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 86448777-0102878976997678407534898777-787558985685035322354677416898882110699987
Q 004617 380 NHLEGPIP-VEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLS 457 (742)
Q Consensus 380 n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~~l~~~~~~~~~~l~~L~ 457 (742)
|.+.+..+ ..|.++++|+.|++++|.+....+..+. +++|+.+++++|.+... +..|..+..+++|+
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-----------~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV-----------DSSPSPFQPLRNLT 483 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT-----------TCSSCTTTTCTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCC-----------CCCCCCCCCCCCCC
T ss_conf 7575435755325754612784489975422764550075431011014644225-----------66776455578789
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 89848983766796002599999899767882000289774366300001588987511111200149986300133001
Q 004617 458 HLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAY 537 (742)
Q Consensus 458 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (742)
.|++++|+++++.+..|.++++|+.|++++|.+.+..+..+....
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~----------------------------------- 528 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP----------------------------------- 528 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC-----------------------------------
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCC-----------------------------------
T ss_conf 998999987767944634553468885889973000000046774-----------------------------------
Q ss_pred EECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CC
Q ss_conf 00221125652799548858888960413767787898326527978980013879889897758806544881321-89
Q 004617 538 IYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV-EL 616 (742)
Q Consensus 538 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~-~l 616 (742)
......++.|+.|++++|.+..+.+..|.++++|+.|++++|+++.+++..|.++++|+.|++++|++++..+..+. .+
T Consensus 529 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 608 (680)
T 1ziw_A 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608 (680)
T ss_dssp CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 14233799888888999978877977734666752238999977767976837898888898999968705966830114
Q ss_pred CCCCEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 989868557871411256--6520126679544468868889999-89999999897667988788767
Q 004617 617 KTLEVFSVAYNNLSGEIL--EWTAQFATFNKSSYEGNTFLCGLPL-PICRSPATMSEASIGNERDDNLI 682 (742)
Q Consensus 617 ~~L~~L~l~~N~l~~~~~--~~~~~~~~~~~~~~~~n~~~c~~~~-~~c~~~~~~~~~~~~~~~~~~~~ 682 (742)
++|+.+++++|||.|.|+ .|+..|.........+ ... ..|..|...++....+.+.+.+.
T Consensus 609 ~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~------~~~~~~C~~p~~~~g~~l~~~~~~~~~ 671 (680)
T 1ziw_A 609 RNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE------LSSHYLCNTPPHYHGFPVRLFDTSSCK 671 (680)
T ss_dssp TTCSEEECTTCCCCBCCCCCSSEECCSSCC---------------------------------------
T ss_pred CCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCC------CCCCCEECCCHHHCCCCCCCCCHHHCC
T ss_conf 665779831897025776689999998736764346------667857797559889864155866469
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=441.95 Aligned_cols=563 Identities=23% Similarity=0.223 Sum_probs=381.3
Q ss_pred EEEEECCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC-
Q ss_conf 9621001701012999997996999857843640115999999996999988886791111899999999888998999-
Q 004617 14 FYFILFAGIERLSRLNNLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK- 92 (742)
Q Consensus 14 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~- 92 (742)
.....+..++. -.+++++||+++|.++.+.+.+|.++++|++|++++|...+.+++.+|..+++|++|+|++|.++.
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred CCCCCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 23799777898--9998688888778678329667766213708867899774441977853787788887989958531
Q ss_pred -------CCCCCEEECCCCCCEECCCH-HHHCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf -------76454665378742002697-5432999867998668988999999988638775644149300028999868
Q 004617 93 -------FVVSKELYLDDTGFKGTLDI-REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKI 164 (742)
Q Consensus 93 -------l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 164 (742)
+++|++|++++|.+.+.++. ..|.++++|++|++++ |.+.+..+...+..+++|+.
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~----------------N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK----------------NQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES----------------CCCCCCCCCGGGGTCSSCCE
T ss_pred CHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCC----------------CCCCCCCCCHHHHHCCCCCE
T ss_conf 97671578665870176788973404676455667999888987----------------86423256655763889898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCCCCC------CCEEECCCCCCCCCCCHHHHHCC--
Q ss_conf 9834875642244224478898651099830688898865700029999------89998348978788864677518--
Q 004617 165 FHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD------LEYVRLSHIKMNGEFPNWLLENN-- 236 (742)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~l~~~l-- 236 (742)
|++++|.+.......+.... ..+|+.|++ ..+......+..+..+++ |+.+++++|.+++..+..+....
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~-~~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQ-GKTLSFFSL-AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHH-HCSSCCCEE-CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred EECCCCCCCEECHHHCCCCC-CCCCCEEEC-CCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 98989847766788753556-775035789-7886665545533223772235740079657886865677888764274
Q ss_pred CCCCEEECCCC---------CCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 88978966786---------4545586587788--874899913481752389012305988229990078375348924
Q 004617 237 TKLATLFLVND---------SLAGPFWLPIHSH--KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS 305 (742)
Q Consensus 237 ~~L~~L~l~~~---------~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 305 (742)
.+++.+.+..+ .+.......|.++ ++|+.|++++|.+. .++...+..+++|+.|++++|.+....+..
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCHHH
T ss_conf 4100112121223466444566889855652555478618989799455-158634525899999989798189879688
Q ss_pred CCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 56999998797316506798835555169999489831466535021134424545797647944100230988864487
Q 004617 306 FGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP 385 (742)
Q Consensus 306 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 385 (742)
|.++++|+.|++++|.+. .++...+.++++|+.|++++|.+.. ..+..|..+++|++|++++|.+...
T Consensus 310 ~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAI-----------IQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp TTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCC-----------CCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred HCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCC-----------CCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 368889998989899788-5187884689999989898998776-----------2866613788899988989977861
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCC
Q ss_conf 77010287897699767840753489877778755898568503532235467741689888211069998789848983
Q 004617 386 IPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNN 465 (742)
Q Consensus 386 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~ 465 (742)
..+++|+.+++++|.+...... ...++.+++++|.+.+. .....+..+++|+.|++++|+
T Consensus 378 -----~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l------------~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 378 -----HFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENL------------DILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp -----SSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSS------------TTHHHHTTCTTCCEEEEESCC
T ss_pred -----CCCCCCCHHCCCCCCCCCCCCC---CCCCCEEECCCCCCCCC------------CHHHHHHCCCCCCEEECCCCC
T ss_conf -----6889823200589972314554---55431221456753457------------556665127766666677871
Q ss_pred CCCCCCC-CCCCCCCCCEEECCCCEEEECCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEE
Q ss_conf 7667960-02599999899767882000289-----77436630000158898751111120014998630013300100
Q 004617 466 LEGEVPV-QLCELNQLQLLDLSNNSLHGSIP-----PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIY 539 (742)
Q Consensus 466 l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (742)
+.+..+. .+..+++|+.|++++|.+....+ ..|..
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~--------------------------------------- 478 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG--------------------------------------- 478 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC---------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC---------------------------------------
T ss_conf 25555433356687310024777736441013553555447---------------------------------------
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 22112565279954885888896041376778789832652797898001387988989775880654488132189989
Q 004617 540 QGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 619 (742)
Q Consensus 540 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L 619 (742)
++.|+.|+|++|.+.+..+..|.++++|+.|+|++|+++++++..+. ++|+.|++++|++++..|..+ .+|
T Consensus 479 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L 549 (844)
T 3j0a_A 479 ----LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSL 549 (844)
T ss_dssp ----BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSC
T ss_pred ----CCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCC
T ss_conf ----55365777889856553955704501221569999978745710110--045588898884788896683---776
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86855787141125665201266795444688688899998-9999999897667988788767
Q 004617 620 EVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDDNLI 682 (742)
Q Consensus 620 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~-~c~~~~~~~~~~~~~~~~~~~~ 682 (742)
+.+++++||+.|.|+. .++..| ....+...|+.+.. .|..|....+.+..+.....|.
T Consensus 550 ~~l~l~~Np~~C~c~~--~~f~~~---~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C~ 608 (844)
T 3j0a_A 550 SVLDITHNKFICECEL--STFINW---LNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCD 608 (844)
T ss_dssp CEEEEEEECCCCSSSC--CSHHHH---HHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC-
T ss_pred CEEEECCCCCCCCCCC--HHHHHH---HHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf 8899319970253661--899999---9736853026600275578066579720027612288
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=433.12 Aligned_cols=566 Identities=22% Similarity=0.231 Sum_probs=424.3
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC--------CCCCCEEECC
Q ss_conf 97996999857843640115999999996999988886791111899999999888998999--------7645466537
Q 004617 31 LKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK--------FVVSKELYLD 102 (742)
Q Consensus 31 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~--------l~~L~~L~l~ 102 (742)
-+.++.++++++.+. ..+. ++++.|++++|.++ .++...|..+++|++|++++|.+++ +++|++|+++
T Consensus 6 ~~~~~cs~~~L~~ip-~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 6 HEVADCSHLKLTQVP-DDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SSEEECCSSCCSSCC-SCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CCEEECCCCCCCCCC-CCCC--CCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 874487779805264-1248--88768889899778-7597887178767588788996485697787406676888899
Q ss_pred CCCCEECCCHHHHCCCCCCCEEECCCCCCCC--------CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 8742002697543299986799866898899--------99999886387756441493000289998689834875642
Q 004617 103 DTGFKGTLDIREFDSFNNLEVLDMSYNKIDN--------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNA 174 (742)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 174 (742)
+|.+. .++...|.++++|++|++++|.+.. +++|+.|++++|.+.+ .....+..+++|+.|++++|.+..
T Consensus 82 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 82 HNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp SSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCCC-CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCC
T ss_conf 98567-5685453038888989898996685396674156788889898995246-672111245567779745884365
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHH--HCCCCCCEEECCCCCCCCC
Q ss_conf 24422447889865109983068889886570002999989998348978788864677--5188897896678645455
Q 004617 175 EITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLL--ENNTKLATLFLVNDSLAGP 252 (742)
Q Consensus 175 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~l~~L~~L~l~~~~l~~~ 252 (742)
.....+ ......+|++|++ +++......+..+..+++++.+++.++.+.+.....+. ...++|+.|++.+|.+.+.
T Consensus 160 ~~~~~~-~~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 160 LKSEEL-DIFANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp BCHHHH-GGGTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred CCHHHH-HCCCCCCCCEEEC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 297886-2446663217988-89825655815553223445543056646805677787775315100887457743646
Q ss_pred CCCCCCCCCC--CCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC------
Q ss_conf 8658778887--48999134817523890123059882299900783753489245699999879731650679------
Q 004617 253 FWLPIHSHKR--LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG------ 324 (742)
Q Consensus 253 ~~~~~~~l~~--L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------ 324 (742)
.+..+..++. |+.|++++|.+. .++...+..+++|+.|++++|.+....+..|.++++|+.+++++|...+
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred CHHHHHCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCC
T ss_conf 866751467677888778788767-5680211674105685577885676586562678885577363313213333355
Q ss_pred --CCCHHHHHCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC--CCCCCCCCC--CCCCE
Q ss_conf --883555516999948983146653502113442454579764794410023098886448--777010287--89769
Q 004617 325 --EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG--PIPVEFCQL--YSLQI 398 (742)
Q Consensus 325 --~~~~~~~~~l~~L~~L~L~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l--~~L~~ 398 (742)
.+....+..+++|++|++++|.+.. ..+..|..+++|++|++++|.+.. .....|..+ ++|+.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPG-----------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCC-----------CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCC-----------CCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCE
T ss_conf 454386562467778888798982687-----------885574065687289887980144323532202455686766
Q ss_pred EECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCC------------CCCCCCCCCCCCHHHHCCCCCCEEECCCCC
Q ss_conf 97678407534898777-78755898568503532235------------467741689888211069998789848983
Q 004617 399 LDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKR------------DLSYNLLNGSIPDWIGELSQLSHLILGHNN 465 (742)
Q Consensus 399 L~l~~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~------------~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~ 465 (742)
|++++|.+.+..+..+. +++|+.+++++|.+.+..+. ++++|.+....+..|..+++|+.|++++|.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCC
T ss_conf 88999977767754420778888886778757543575532575461278448997542276455007543101101464
Q ss_pred CC--CCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCC
Q ss_conf 76--6796002599999899767882000289774366300001588987511111200149986300133001002211
Q 004617 466 LE--GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKV 543 (742)
Q Consensus 466 l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (742)
+. +..+..+..+++|+.|++++|.+++..+..|..
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~------------------------------------------- 502 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG------------------------------------------- 502 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCC-------------------------------------------
T ss_conf 4225667764555787899989999877679446345-------------------------------------------
Q ss_pred CCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 2565279954885888896--------04137677878983265279789800138798898977588065448813218
Q 004617 544 LSLLSGLYLSCNKLIGHIP--------PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 615 (742)
Q Consensus 544 l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 615 (742)
++.|+.|++++|.+....+ ..|.++++|+.|++++|.++.++++.|.++++|+.|++++|.++...+..+..
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 53468885889973000000046774142337998888889999788779777346667522389999777679768378
Q ss_pred CCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99898685578714112566520-126679544468868889999
Q 004617 616 LKTLEVFSVAYNNLSGEILEWTA-QFATFNKSSYEGNTFLCGLPL 659 (742)
Q Consensus 616 l~~L~~L~l~~N~l~~~~~~~~~-~~~~~~~~~~~~n~~~c~~~~ 659 (742)
+++|+.+++++|.++...+..+. .+.++..+++.+|||.|+|+.
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 988888989999687059668301146657798318970257766
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=420.81 Aligned_cols=546 Identities=19% Similarity=0.172 Sum_probs=346.8
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC--------CCCCCEEE
Q ss_conf 9997996999857843640115999999996999988886791111899999999888998999--------76454665
Q 004617 29 NNLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK--------FVVSKELY 100 (742)
Q Consensus 29 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~--------l~~L~~L~ 100 (742)
+.+++|++++|.++.+.+.+|.++++|++|++++|.+. .+.+.+|..+++|++|++++|+++. +++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCC-EECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 86758981587347179667256766528978898355-24851136843367644889856545865523442153765
Q ss_pred CCCCCCEECCCHHHHCCCCCCCEEECCCCCCCC--------CCCCCEEECCCCCCCCCCCCCCCCCCCCCC--EEECCCC
Q ss_conf 378742002697543299986799866898899--------999998863877564414930002899986--8983487
Q 004617 101 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN--------LVVPQELRLSDNHFRIPISLEPLFNHSRLK--IFHAKNN 170 (742)
Q Consensus 101 l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~ 170 (742)
+++|.+.+..+. .+.++++|++|++++|.+.. +++|+.|++++|.++ ......+..+++++ .+++++|
T Consensus 112 L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 112 FIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTC
T ss_pred CCCCCCCCCCCC-HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHHHCCCCEEEEECCCC
T ss_conf 212676657810-1223782238988798341147654568765687776568445-54965633221564038966798
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
Q ss_conf 56422442244788986510998306888988657000299998999834897878886467751888978966786454
Q 004617 171 QMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLA 250 (742)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~l~ 250 (742)
.+....... .....++.|++ .++. ..+..+..+..++...+.-.... +....
T Consensus 190 ~l~~~~~~~----~~~~~L~~L~l-~~~~---~~~~~~~~l~~~~l~~l~~~~~~--------------------~~~~~ 241 (606)
T 3t6q_A 190 DIAGIEPGA----FDSAVFQSLNF-GGTQ---NLLVIFKGLKNSTIQSLWLGTFE--------------------DMDDE 241 (606)
T ss_dssp CCCEECTTT----TTTCEEEEEEC-TTCS---CHHHHHHHTTTCEEEEEECCCCT--------------------TSCCC
T ss_pred CCCCCCHHH----HHHCCCCCCCC-CCCH---HHHHHHHHCCCCCHHHEECHHHC--------------------CCCCC
T ss_conf 147548667----30010013556-7726---67777651335644220020110--------------------26412
Q ss_pred CCCCCCCCCCC--CCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH
Q ss_conf 55865877888--7489991348175238901230598822999007837534892456999998797316506798835
Q 004617 251 GPFWLPIHSHK--RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPE 328 (742)
Q Consensus 251 ~~~~~~~~~l~--~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 328 (742)
......+.++. +++.+++++|.+. .++...+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .++.
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~~~~ 318 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-NLCQ 318 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS-BGGG
T ss_pred CCCHHHHCHHHCCCEEEEEEECCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCC-CCCH
T ss_conf 26866743032075059994457658-557777445667888956288267-77821416546888977168768-6760
Q ss_pred HHHHCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC--CCCCCCCCCCCEEECCCCCC
Q ss_conf 5551699994898314665350211344245457976479441002309888644877--70102878976997678407
Q 004617 329 HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI--PVEFCQLYSLQILDISDNNI 406 (742)
Q Consensus 329 ~~~~~l~~L~~L~L~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~i 406 (742)
..+.++++|++|++++|.+.. ...+..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRL----------ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCC----------BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred HHHHCCCCCCEEECCCCCCCC----------CCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCC
T ss_conf 233015768988898997444----------3462455066758988788996664567522105678889898989967
Q ss_pred CCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 534898777-7875589856850353223546774168988821106999878984898376679600259999989976
Q 004617 407 SGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 485 (742)
Q Consensus 407 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 485 (742)
.+..+..+. +++|+.+++++|.+.+. ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFTRLKVK------------DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTCCEECC------------TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCC------------CCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 757888734774577687888867775------------65212417655888989898557768778737887888989
Q ss_pred CCCEEEECC-C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 788200028-9--7743663000015889875111112001499863001330010022112565279954885888896
Q 004617 486 SNNSLHGSI-P--PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIP 562 (742)
Q Consensus 486 ~~n~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 562 (742)
++|++.+.. + ..+.. ++.|+.|++++|.+.+..+
T Consensus 457 ~~n~l~~~~~~~~~~~~~-------------------------------------------l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQT-------------------------------------------LGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp TTCBCGGGEECSSCGGGG-------------------------------------------CTTCCEEECTTSCCCEECT
T ss_pred CCCCCCCCCCCCCHHHCC-------------------------------------------CCCCCEEECCCCCCCCCCH
T ss_conf 899888543454312404-------------------------------------------8876688799996670686
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCC
Q ss_conf 0413767787898326527978980013879889897758806544881321899898685578714112566-520126
Q 004617 563 PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE-WTAQFA 641 (742)
Q Consensus 563 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~ 641 (742)
..|..+++|+.|++++|++++..+..+.++++| .|++++|.+++..+..+..+++|+.+++++||+.|.|+. |+..|.
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf 463265678889898980686896684756651-8987689414268766256778788967799861667757899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 679544468868889999899999998976679887887
Q 004617 642 TFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN 680 (742)
Q Consensus 642 ~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~ 680 (742)
.-......+ .....|..|...++..+.+.+..+
T Consensus 573 ~~~~~~~~~------~~~~~C~~p~~~~g~~l~~~~~~c 605 (606)
T 3t6q_A 573 KENMQKLED------TEDTLCENPPLLRGVRLSDVTLSC 605 (606)
T ss_dssp HHCGGGEEC------GGGCBEEESGGGTTCBGGGCCCCC
T ss_pred HHCCCCCCC------CCCCEECCCHHHCCCEEEEEECCC
T ss_conf 737553367------788736972686897556311467
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=402.43 Aligned_cols=546 Identities=22% Similarity=0.185 Sum_probs=377.3
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCEECCC
Q ss_conf 79969998578436401159999999969999888867911118999999998889989997645466537874200269
Q 004617 32 KMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLD 111 (742)
Q Consensus 32 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~~~~~~~ 111 (742)
+..|.++++++.+.. -.++++.|+|++|.++ .+.+..|..+++|++|+|++|... +.++
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~----------------~~i~ 65 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTP----------------LTID 65 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCC----------------CEEC
T ss_pred EEEECCCCCCCCCCC----CCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCC----------------CCCC
T ss_conf 489823799777898----9998688888778678-329667766213708867899774----------------4419
Q ss_pred HHHHCCCCCCCEEECCCCCCCC--------CCCCCEEECCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 7543299986799866898899--------9999988638775644149-300028999868983487564224422447
Q 004617 112 IREFDSFNNLEVLDMSYNKIDN--------LVVPQELRLSDNHFRIPIS-LEPLFNHSRLKIFHAKNNQMNAEITESHSL 182 (742)
Q Consensus 112 ~~~~~~l~~L~~L~Ls~n~l~~--------~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 182 (742)
...|.++++|++|++++|.+.. +++|+.|++++|.+.+..+ ...+..+++|+.|++++|.+...... ..
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~ 143 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH--PS 143 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC--GG
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--HH
T ss_conf 7785378778888798995853197671578665870176788973404676455667999888987864232566--55
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCHHCCCC--CCCCEEECCCCCCCCCCCHHHHHCCCC------CCEEECCCCCCCCCCC
Q ss_conf 88986510998306888988657000299--998999834897878886467751888------9789667864545586
Q 004617 183 TAPNFQLQSLSLSSSYGDGVTFPKFLYHQ--HDLEYVRLSHIKMNGEFPNWLLENNTK------LATLFLVNDSLAGPFW 254 (742)
Q Consensus 183 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~l~~------L~~L~l~~~~l~~~~~ 254 (742)
+....+|++|++ +++......+..+..+ ++|+.++++.+.+.+..+..+ ..+++ |+.|++.+|.+....+
T Consensus 144 ~~~L~~L~~L~L-s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 144 FGKLNSLKSIDF-SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp GGTCSSCCEEEE-ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred HHHCCCCCEEEC-CCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCH-HHCCCCCCCCCEEEEECCCCCCCHHHH
T ss_conf 763889898989-898477667887535567750357897886665545533-223772235740079657886865677
Q ss_pred CCCCC---CCCCCEEECCCCCCCC--------CCCCHHHCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 58778---8874899913481752--------389012305--9882299900783753489245699999879731650
Q 004617 255 LPIHS---HKRLGILDISNNNIRG--------HIPVEIGDV--LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQ 321 (742)
Q Consensus 255 ~~~~~---l~~L~~L~l~~n~l~~--------~i~~~~~~~--l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 321 (742)
..+.. ...++.+.++.+.+.. ......+.. .++++.|++++|.+....+..|..+++|+.|++++|.
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred HHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 88876427441001121212234664445668898556525554786189897994551586345258999999897981
Q ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 67988355551699994898314665350211344245457976479441002309888644877701028789769976
Q 004617 322 LTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 401 (742)
Q Consensus 322 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 401 (742)
+. .++...|.++++|++|++++|.+.. ..+..|..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 302 i~-~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 302 IN-KIADEAFYGLDNLQVLNLSYNLLGE-----------LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CC-EECTTTTTTCSSCCEEEEESCCCSC-----------CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CC-CCCHHHHCCCCCCCEEECCCCCCCC-----------CCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 89-8796883688899989898997885-----------18788468999998989899877628666137888999889
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCC
Q ss_conf 7840753489877778755898568503532235467741689888211069998789848983766796-002599999
Q 004617 402 SDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQL 480 (742)
Q Consensus 402 ~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L 480 (742)
++|.+..... .++|+.+.+++|++.. +|. ...+++.|++++|++.+... ..+..+++|
T Consensus 370 s~N~l~~i~~----~~~L~~L~l~~N~l~~--------------l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 370 RDNALTTIHF----IPSIPDIFLSGNKLVT--------------LPK---INLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp ETCCSCCCSS----CCSCSEEEEESCCCCC--------------CCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred CCCCCCCCCC----CCCCCHHCCCCCCCCC--------------CCC---CCCCCCEEECCCCCCCCCCHHHHHHCCCCC
T ss_conf 8997786168----8982320058997231--------------455---455431221456753457556665127766
Q ss_pred CEEECCCCEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCEEECCCCCCC-
Q ss_conf 89976788200028977-4366300001588987511111200149986300133001002211256527995488588-
Q 004617 481 QLLDLSNNSLHGSIPPC-FDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI- 558 (742)
Q Consensus 481 ~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~- 558 (742)
+.|++++|.+.+..+.. +.. +++|+.|++++|.+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~-------------------------------------------~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSE-------------------------------------------NPSLEQLFLGENMLQL 465 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCS-------------------------------------------CTTCCBCEEESCCCSS
T ss_pred CEEECCCCCCCCCCCCCCCCC-------------------------------------------CCCCCCCCCCCCCCCC
T ss_conf 666677871255554333566-------------------------------------------8731002477773644
Q ss_pred ----CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf ----8896041376778789832652797898001387988989775880654488132189989868557871411256
Q 004617 559 ----GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 634 (742)
Q Consensus 559 ----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 634 (742)
+..+..|.++++|+.|+|++|.+++.++..|.++++|+.|++++|+++...+..+. ++|+.|++++|.+++..+
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCH
T ss_conf 101355355544755365777889856553955704501221569999978745710110--045588898884788896
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65201266795444688688899998------------99999998976679887887677
Q 004617 635 EWTAQFATFNKSSYEGNTFLCGLPLP------------ICRSPATMSEASIGNERDDNLID 683 (742)
Q Consensus 635 ~~~~~~~~~~~~~~~~n~~~c~~~~~------------~c~~~~~~~~~~~~~~~~~~~~~ 683 (742)
.. +..+..+++.+||+.|+|+.. .|..+....+..+....+.....
T Consensus 544 ~~---~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~ 601 (844)
T 3j0a_A 544 DV---FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFS 601 (844)
T ss_dssp CC---CSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTT
T ss_pred HH---HCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 68---37768899319970253661899999973685302660027557806657972002
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=399.78 Aligned_cols=551 Identities=19% Similarity=0.160 Sum_probs=403.0
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 99997996999857843640115999999996999988886791111899999999888998999764546653787420
Q 004617 28 LNNLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFK 107 (742)
Q Consensus 28 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~~~ 107 (742)
.+++++|++++|.++.+.+.+|.++++|++|++++|.++ .+++.+|..+++|++|+|++|+++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~---------------- 93 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQ---------------- 93 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC----------------
T ss_pred CCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC-CCCHHHHHCHHHCCEEECCCCCCC----------------
T ss_conf 887678878889757737545557766748868877366-439777306010688678798563----------------
Q ss_pred ECCCHHHHCCCCCCCEEECCCCCCCC--------CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 02697543299986799866898899--------9999988638775644149300028999868983487564224422
Q 004617 108 GTLDIREFDSFNNLEVLDMSYNKIDN--------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITES 179 (742)
Q Consensus 108 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 179 (742)
.++...|.++++|++|++++|.+.. +++|+.|++++|.+.+......+.++++|+.|++++|.+.......
T Consensus 94 -~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 94 -SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp -CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred -CCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHH
T ss_conf -0485220786537888703775554451134898877989687885232530686732677778876688531057334
Q ss_pred CCCCCCCC-CCEEEEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC------C
Q ss_conf 44788986-5109983068889886570002999989998348978788864677518889789667864545------5
Q 004617 180 HSLTAPNF-QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG------P 252 (742)
Q Consensus 180 ~~~~~~~~-~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~l~~------~ 252 (742)
+....... .+..+++ .++......+.. ....+|+.++++++.+.+......+.+++.++.+.+....+.. .
T Consensus 173 ~~~l~~L~~~l~~L~l-~~n~l~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDM-SLNPIDFIQDQA-FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp THHHHHCTTCCCEEEC-TTCCCCEECTTT-TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred HHHHHCCCCCCCEEEC-CCCCCCEECCCC-CCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1212034200243004-689753257110-56760433524678561667788860266565231411110367741026
Q ss_pred CCCCCCCCC--CCCEEEC-CCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 865877888--7489991-3481752389012305988229990078375348924569999987973165067988355
Q 004617 253 FWLPIHSHK--RLGILDI-SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEH 329 (742)
Q Consensus 253 ~~~~~~~l~--~L~~L~l-~~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 329 (742)
....+.++. .++.+++ ..+.+.+.+|. +..+++|+.++++++.+.. .+ .+..+++|+.|++++|.+. .+|.
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp~- 324 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFPT- 324 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCCC-
T ss_pred CHHHHHHHHHCCHHHEECCCCCCCCCCCCC--CCCCCCCCEEEECCCCCHH-HH-HCCCCCCCCEEECCCCCCC-CCCC-
T ss_conf 817766665434745012366555543222--3548878987714766044-35-4334011778976466676-5466-
Q ss_pred HHHCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCC
Q ss_conf 55169999489831466535021134424545797647944100230988864487--7701028789769976784075
Q 004617 330 LAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP--IPVEFCQLYSLQILDISDNNIS 407 (742)
Q Consensus 330 ~~~~l~~L~~L~L~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~i~ 407 (742)
+ .+++|+.|++++|.... ...+..+++|++|++++|.+... .+..+..+++|+.|++++|.+.
T Consensus 325 ~--~l~~L~~L~l~~n~~~~-------------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 325 L--DLPFLKSLTLTMNKGSI-------------SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp C--CCSSCCEEEEESCSSCE-------------ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred C--CCCCCCEEECCCCCCCC-------------CHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC
T ss_conf 7--88755644544786853-------------10002489888797758736877520122146775548678899530
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 3489877778755898568503532235467741689888-211069998789848983766796002599999899767
Q 004617 408 GSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP-DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 486 (742)
Q Consensus 408 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 486 (742)
........+++|+.+++++|.+.+ ..+ ..+..+++|+.|++++|.+.+..+..+.++++|+.|+++
T Consensus 390 ~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 390 IMSANFMGLEELQHLDFQHSTLKR-------------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp EECCCCTTCTTCCEEECTTSEEES-------------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred CCHHHCCCCCCCCEEECCCCCCCC-------------CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 005540688888965898870587-------------5376456462137889896897874335553477878989898
Q ss_pred CCEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 882000-2897743663000015889875111112001499863001330010022112565279954885888896041
Q 004617 487 NNSLHG-SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI 565 (742)
Q Consensus 487 ~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 565 (742)
+|.+.+ ..|..+..+ +.|+.|++++|.+.+..+..+
T Consensus 457 ~n~l~~~~~~~~~~~l-------------------------------------------~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANT-------------------------------------------TNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TCEEGGGEECSCCTTC-------------------------------------------TTCCEEECTTSCCCEECTTTT
T ss_pred CCCCCCCCHHHHHCCC-------------------------------------------CCCCEEECCCCCCCCCCHHHH
T ss_conf 9837985467760457-------------------------------------------889989898885776486561
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3767787898326527978980013879889897758806544881321899-898685578714112566520126679
Q 004617 566 GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSVAYNNLSGEILEWTAQFATFN 644 (742)
Q Consensus 566 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~~~ 644 (742)
..+++|+.|++++|++++..+..|.++++|+.|++++|+++ .+|..+..++ +|+.+++++|++.|.|+. .++..|.
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~--~~~~~~l 570 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH--QKFLQWV 570 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT--HHHHTTT
T ss_pred CCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC--HHHHHHH
T ss_conf 54646898989899578748777068876898889898376-66876752102174887628986647764--8999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5444688688899998999999989766798878876
Q 004617 645 KSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL 681 (742)
Q Consensus 645 ~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~ 681 (742)
.... ...-+.....|..|...++....+.+.+.|
T Consensus 571 ~~~~---~~~~~~~~~~C~~p~~~~~~~l~~~~~~~c 604 (606)
T 3vq2_A 571 KEQK---QFLVNVEQMTCATPVEMNTSLVLDFNNSTC 604 (606)
T ss_dssp TTSS---SSBSSGGGCCCC------------------
T ss_pred HCCC---CCCCCCCCCEECCCHHHCCCEEEECCCCCC
T ss_conf 7276---400477661659775768987664460017
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=391.21 Aligned_cols=528 Identities=21% Similarity=0.208 Sum_probs=369.6
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCEEC
Q ss_conf 99799699985784364011599999999699998888679111189999999988899899976454665378742002
Q 004617 30 NLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGT 109 (742)
Q Consensus 30 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~~~~~ 109 (742)
.-+.++.++..++.+ |..+. .+++.|++++|.++ .+++..|..+++|++|++++|++. .
T Consensus 13 ~~~~~~c~~~~l~~i-P~~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~-----------------~ 71 (606)
T 3t6q_A 13 VNKTYNCENLGLNEI-PGTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY-----------------W 71 (606)
T ss_dssp TTTEEECTTSCCSSC-CTTSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCC-----------------E
T ss_pred CCCEEECCCCCCCCC-CCCCC--CCCCEEECCCCCCC-CCCHHHHCCCCCCEEEECCCCCCC-----------------E
T ss_conf 872377777980628-67789--86758981587347-179667256766528978898355-----------------2
Q ss_pred CCHHHHCCCCCCCEEECCCCCCCC--------CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 697543299986799866898899--------999998863877564414930002899986898348756422442244
Q 004617 110 LDIREFDSFNNLEVLDMSYNKIDN--------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHS 181 (742)
Q Consensus 110 ~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 181 (742)
++...|.++++|++|++++|.+.. ++.|+.|++++|.++ .+....+..+++|+.|++++|.+.......
T Consensus 72 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 148 (606)
T 3t6q_A 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPK-- 148 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCT--
T ss_pred ECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCCCHHCCCCCCCEEECCCCCCCCCCCCC--
T ss_conf 48511368433676448898565458655234421537652126766-578101223782238988798341147654--
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCC--EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 7889865109983068889886570002999989--99834897878886467751888978966786454558658778
Q 004617 182 LTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLE--YVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHS 259 (742)
Q Consensus 182 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~l~~~l~~L~~L~l~~~~l~~~~~~~~~~ 259 (742)
.....+|++|++ .++......+..+..+++++ .++++++.+.+..+..+ ....++.+++.++... +..+..
T Consensus 149 -~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~ 221 (606)
T 3t6q_A 149 -GFPTEKLKVLDF-QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNL---LVIFKG 221 (606)
T ss_dssp -TCCCTTCCEEEC-CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCH---HHHHHH
T ss_pred -CCCCCCCCEEEC-CCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHH--HHCCCCCCCCCCCHHH---HHHHHH
T ss_conf -568765687776-568445549656332215640389667981475486673--0010013556772667---777651
Q ss_pred CCCCCEEECCCCCCC----CCCCCHHHCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHC
Q ss_conf 887489991348175----238901230598--82299900783753489245699999879731650679883555516
Q 004617 260 HKRLGILDISNNNIR----GHIPVEIGDVLP--SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVG 333 (742)
Q Consensus 260 l~~L~~L~l~~n~l~----~~i~~~~~~~l~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 333 (742)
+..+....+....+. ..++...+..+. +++.+++++|.+....+..|..+++|+.|++++|.+. .+|..+. +
T Consensus 222 l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~ 299 (606)
T 3t6q_A 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-G 299 (606)
T ss_dssp TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-S
T ss_pred CCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHC-C
T ss_conf 3356442200201102641226866743032075059994457658557777445667888956288267-7782141-6
Q ss_pred CCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCC--
Q ss_conf 99994898314665350211344245457976479441002309888644877-701028789769976784075348--
Q 004617 334 CVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI-PVEFCQLYSLQILDISDNNISGSL-- 410 (742)
Q Consensus 334 l~~L~~L~L~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~-- 410 (742)
+++|++|++++|.+.. ..+..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..
T Consensus 300 l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 368 (606)
T 3t6q_A 300 LSTLKKLVLSANKFEN-----------LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368 (606)
T ss_dssp CTTCCEEECTTCCCSB-----------GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES
T ss_pred CCCCCEEECCCCCCCC-----------CCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 5468889771687686-----------76023301576898889899744434624550667589887889966645675
Q ss_pred CCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCC
Q ss_conf 98777-787558985685035322354677416898882110699987898489837667960-0259999989976788
Q 004617 411 PSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSNN 488 (742)
Q Consensus 411 ~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n 488 (742)
+..+. +++|+++++++|.+.+ ..+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLS-------------LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEE-------------ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred CHHCCCCCCCCEEECCCCCCCC-------------CCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 2210567888989898996775-------------788873477457768788886777565212417655888989898
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCEEECCCCCCCCC---CCCCC
Q ss_conf 200028977436630000158898751111120014998630013300100221125652799548858888---96041
Q 004617 489 SLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH---IPPQI 565 (742)
Q Consensus 489 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~ 565 (742)
.+.+..|..+..+ +.|+.|++++|.+.+. .+..+
T Consensus 436 ~l~~~~~~~~~~l-------------------------------------------~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 436 LLDISSEQLFDGL-------------------------------------------PALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp CCBTTCTTTTTTC-------------------------------------------TTCCEEECTTCBCGGGEECSSCGG
T ss_pred CCCCCCHHHHHCC-------------------------------------------CCCCEEECCCCCCCCCCCCCCHHH
T ss_conf 5577687787378-------------------------------------------878889898998885434543124
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 37677878983265279789800138798898977588065448813218998986855787141125665201266795
Q 004617 566 GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNK 645 (742)
Q Consensus 566 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 645 (742)
..+++|+.|++++|.+++..+..|.++++|+.|++++|++.+..+..+..++.| .+++++|.++...+..+..+.++..
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 048876688799996670686463265678889898980686896684756651-8987689414268766256778788
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 4446886888999
Q 004617 646 SSYEGNTFLCGLP 658 (742)
Q Consensus 646 ~~~~~n~~~c~~~ 658 (742)
+++.+||+.|+|+
T Consensus 552 L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 552 INLRQNPLDCTCS 564 (606)
T ss_dssp EECTTCCEECSGG
T ss_pred EECCCCCCCCCCC
T ss_conf 9677998616677
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=385.36 Aligned_cols=509 Identities=18% Similarity=0.169 Sum_probs=378.9
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCEEC
Q ss_conf 99799699985784364011599999999699998888679111189999999988899899976454665378742002
Q 004617 30 NLKMLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGT 109 (742)
Q Consensus 30 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~L~~L~l~~~~~~~~ 109 (742)
..++++.+++.++.+.. .+. ++++.|++++|.++ .++...|..+++|++|++++|.++ .
T Consensus 12 ~~~~~~c~~~~l~~ip~-~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~-----------------~ 70 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVPD-DIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIE-----------------T 70 (606)
T ss_dssp TTTEEECTTSCCSSCCT-TSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC-----------------E
T ss_pred CCCCEECCCCCCCCCCC-CCC--CCCCEEECCCCCCC-EECHHHCCCCCCCCEEECCCCCCC-----------------C
T ss_conf 89705746888451898-888--87678878889757-737545557766748868877366-----------------4
Q ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69754329998679986689889999999886387756441493000289998689834875642244224478898651
Q 004617 110 LDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQL 189 (742)
Q Consensus 110 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 189 (742)
++...|.++++|++|++++|.+.. .....+.++++|+.|++++|.+....... +....+|
T Consensus 71 i~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L 130 (606)
T 3vq2_A 71 IEDKAWHGLHHLSNLILTGNPIQS-----------------FSPGSFSGLTSLENLVAVETKLASLESFP---IGQLITL 130 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCC-----------------CCTTSSTTCTTCCEEECTTSCCCCSSSSC---CTTCTTC
T ss_pred CCHHHHHCHHHCCEEECCCCCCCC-----------------CCHHHCCCCCCCCEEECCCCCCCCCCCCC---CCCCCCC
T ss_conf 397773060106886787985630-----------------48522078653788870377555445113---4898877
Q ss_pred EEEEEECCCCCCC-CCCHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC----CCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0998306888988-657000299998999834897878886467751888----97896678645455865877888748
Q 004617 190 QSLSLSSSYGDGV-TFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTK----LATLFLVNDSLAGPFWLPIHSHKRLG 264 (742)
Q Consensus 190 ~~L~L~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~----L~~L~l~~~~l~~~~~~~~~~l~~L~ 264 (742)
++|++ +++.... ..|..+..+++|++|++++|.+++..+..+ ..+.+ +..+++.+|.+....+..+... +|+
T Consensus 131 ~~L~L-~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~ 207 (606)
T 3vq2_A 131 KKLNV-AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLH 207 (606)
T ss_dssp CEEEC-CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEE
T ss_pred CEEEC-CCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHH-HHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEE
T ss_conf 98968-78852325306867326777788766885310573341-2120342002430046897532571105676-043
Q ss_pred EEECCCCCCCCCCCCHHHCCCCCCCEEEC---------------------------------CCCCCCCCCCCCCCCCCC
Q ss_conf 99913481752389012305988229990---------------------------------078375348924569999
Q 004617 265 ILDISNNNIRGHIPVEIGDVLPSLYVFNI---------------------------------SMNALDGSIPSSFGNMKF 311 (742)
Q Consensus 265 ~L~l~~n~l~~~i~~~~~~~l~~L~~L~l---------------------------------~~n~i~~~~~~~~~~l~~ 311 (742)
.|++++|.+.+.........++.++.+++ ..+.+....+. +..+++
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~ 286 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLAN 286 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTT
T ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCC
T ss_conf 3524678561667788860266565231411110367741026817766665434745012366555543222-354887
Q ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 98797316506798835555169999489831466535021134424545797647944100230988864487770102
Q 004617 312 LQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFC 391 (742)
Q Consensus 312 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 391 (742)
|+.+++++|.+. .++ .+..+++|+.|++++|.+.. .+ .+ .+++|++|++++|..... ..+.
T Consensus 287 L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~~------------lp-~~-~l~~L~~L~l~~n~~~~~--~~~~ 347 (606)
T 3vq2_A 287 VSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLKQ------------FP-TL-DLPFLKSLTLTMNKGSIS--FKKV 347 (606)
T ss_dssp CSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCSS------------CC-CC-CCSSCCEEEEESCSSCEE--CCCC
T ss_pred CCEEEECCCCCH-HHH--HCCCCCCCCEEECCCCCCCC------------CC-CC-CCCCCCEEECCCCCCCCC--HHHC
T ss_conf 898771476604-435--43340117789764666765------------46-67-887556445447868531--0002
Q ss_pred CCCCCCEEECCCCCCCCCC--CCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
Q ss_conf 8789769976784075348--98777-78755898568503532235467741689888211069998789848983766
Q 004617 392 QLYSLQILDISDNNISGSL--PSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG 468 (742)
Q Consensus 392 ~l~~L~~L~l~~n~i~~~~--~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 468 (742)
.+++|+.|++++|.+.+.. +..+. +++|+++++++|.+.. .+..+..+++|+.|++++|++.+
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--------------~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--------------MSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--------------ECCCCTTCTTCCEEECTTSEEES
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC--------------CHHHCCCCCCCCEEECCCCCCCC
T ss_conf 4898887977587368775201221467755486788995300--------------05540688888965898870587
Q ss_pred CCC-CCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCC
Q ss_conf 796-0025999998997678820002897743663000015889875111112001499863001330010022112565
Q 004617 469 EVP-VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLL 547 (742)
Q Consensus 469 ~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 547 (742)
..+ ..+..+++|+.|++++|.+.+..|..+..+ +.|
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------------------~~L 450 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-------------------------------------------TSL 450 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-------------------------------------------TTC
T ss_pred CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCC-------------------------------------------CCC
T ss_conf 5376456462137889896897874335553477-------------------------------------------878
Q ss_pred CEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 279954885888-8960413767787898326527978980013879889897758806544881321899898685578
Q 004617 548 SGLYLSCNKLIG-HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY 626 (742)
Q Consensus 548 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~ 626 (742)
+.|++++|.+.+ ..+..+..+++|+.|++++|.+++..+..|.++++|++|++++|++.+..|..+..+++|+.|++++
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred CEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCC
T ss_conf 98989898379854677604578899898988857764865615464689898989957874877706887689888989
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 714112566520126-6795444688688899998
Q 004617 627 NNLSGEILEWTAQFA-TFNKSSYEGNTFLCGLPLP 660 (742)
Q Consensus 627 N~l~~~~~~~~~~~~-~~~~~~~~~n~~~c~~~~~ 660 (742)
|+++. .+.++..+. ++...++.+|++.|+|+..
T Consensus 531 N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 531 NRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp SCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCCCC-CCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 83766-68767521021748876289866477648
Done!