Your job contains 1 sequence.
>004618
MLLFSIFDLIGDLSRLFFLCFTWFRAEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIG
QAIDIDIPPPRPKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPI
CDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFV
PSLKEVVNQDETRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHG
EKRDDVADALPTAEVQATQNYPRHVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGN
PNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVS
TLLQNPAAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAA
TAWWAAHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQP
DLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNR
KQVDRSSCGSNTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSW
KEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQDNVEDKQNGNKKDGDKSLFDLNSK
TWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRIL
NTGNQAEEKCPKRIRVEGATT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004618
(741 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2200970 - symbol:LHY "LATE ELONGATED HYPOCOTYL... 470 4.3e-80 3
TAIR|locus:2044345 - symbol:CCA1 "circadian clock associa... 293 8.6e-44 3
TAIR|locus:504955668 - symbol:AT3G10113 species:3702 "Ara... 115 2.9e-05 2
TAIR|locus:2014114 - symbol:EPR1 "EARLY-PHYTOCHROME-RESPO... 115 3.6e-05 3
TAIR|locus:2169135 - symbol:RVE2 "REVEILLE 2" species:370... 104 4.1e-05 2
>TAIR|locus:2200970 [details] [associations]
symbol:LHY "LATE ELONGATED HYPOCOTYL" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IEP;RCA] [GO:0009733 "response to auxin stimulus"
evidence=IEP;RCA] [GO:0009737 "response to abscisic acid stimulus"
evidence=IEP;RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IEP;RCA] [GO:0009751 "response to salicylic acid stimulus"
evidence=IEP;RCA] [GO:0009753 "response to jasmonic acid stimulus"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0048574 "long-day photoperiodism, flowering"
evidence=IGI;RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA;IMP] [GO:0043433 "negative regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0007623 "circadian rhythm"
evidence=IGI;RCA] [GO:0009409 "response to cold" evidence=IGI]
[GO:0042754 "negative regulation of circadian rhythm" evidence=IMP]
[GO:0009639 "response to red or far red light" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634
GO:GO:0046686 GO:GO:0009733 GO:GO:0009753 GO:GO:0009723
GO:GO:0007623 GO:GO:0009651 GO:GO:0009409 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0009751 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0044212 GO:GO:0009739 GO:GO:0043433
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0048574 HOGENOM:HOG000084594 GO:GO:0042754
EMBL:AC007323 EMBL:AJ006404 EMBL:AY519507 EMBL:AK316728
EMBL:AK316829 IPI:IPI00517620 RefSeq:NP_001030924.1
RefSeq:NP_171614.1 RefSeq:NP_849568.1 UniGene:At.25466
ProteinModelPortal:Q6R0H1 SMR:Q6R0H1 IntAct:Q6R0H1 STRING:Q6R0H1
PRIDE:Q6R0H1 EnsemblPlants:AT1G01060.1 EnsemblPlants:AT1G01060.2
EnsemblPlants:AT1G01060.3 GeneID:839341 KEGG:ath:AT1G01060
GeneFarm:1653 TAIR:At1g01060 eggNOG:NOG269073 InParanoid:Q6R0H1
KO:K12133 OMA:QKFFTKL PhylomeDB:Q6R0H1 ProtClustDB:CLSN2682827
Uniprot:Q6R0H1
Length = 645
Score = 470 (170.5 bits), Expect = 4.3e-80, Sum P(3) = 4.3e-80
Identities = 139/395 (35%), Positives = 193/395 (48%)
Query: 242 KRDDVADALPTAEVQATQNYPRHVNVHILDGSLGTGTQS-PSDMPMQESIFHPIGE-VHG 299
K++ D V + QNYP H + I++G++ Q+ PS M Q+ +FHP+ E HG
Sbjct: 199 KKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHG 258
Query: 300 NPNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIV 359
+ NL A++ TT ++HQ+FP H QDDYRSFL ISS FS+LI+
Sbjct: 259 HANLQATTASATTT--------ASHQAFPACH--------SQDDYRSFLQISSTFSNLIM 302
Query: 360 STLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXX 419
STLLQNP + WPY ++ S DS T P SSPPS+
Sbjct: 303 STLLQNPAAHAAATFAASVWPYASVGNSGDSST-PMS-------SSPPSITAIAAATVAA 354
Query: 420 XXXXXXXHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPA-AKTDKNDNTPP----NPA 474
HGLLP+CAP AP C P AV + PA + D +NT P N A
Sbjct: 355 ATAWWASHGLLPVCAP--APITCVPFSTVAVPT------PAMTEMDTVENTQPFEKQNTA 406
Query: 475 LKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNS-EENELHD 533
L+D Q S A + +S +T L +DS+ + ++ + A H+ N+ ++ L D
Sbjct: 407 LQD-QNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVD 465
Query: 534 SNKTKNRKQVDRSSCGSNTPSSSEVETDALXXXXXXXXXXXXIDPSLPATDPGNRRSRSS 593
+ + S + T + ++E D I+ L R + S+
Sbjct: 466 RSSCGSNTP---SGSDAETDALDKMEKDKEDVKETDENQPDVIE--LNNRKIKMRDNNSN 520
Query: 594 SNIT-DSWKEVSEVGRLAFQALFSREVLPQSFSPP 627
+N T DSWKEVSE GR+AFQALF+RE LPQSFSPP
Sbjct: 521 NNATTDSWKEVSEEGRIAFQALFARERLPQSFSPP 555
Score = 225 (84.3 bits), Expect = 4.3e-80, Sum P(3) = 4.3e-80
Identities = 66/148 (44%), Positives = 82/148 (55%)
Query: 23 WFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIXXXXXXXXXXXXXX 81
W R E HIGTK AVQIRSHAQKFF+KLEKEA KG+P+ QA+DI+I
Sbjct: 46 WQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYP 105
Query: 82 XXTCTNAPMS-QIG-AKDGKLRSSVSSLRCNQV-LDLEKEPICDRPNGDEKPTYTIESQK 138
N S Q+ AKD KL SS SS + NQ LDLEK P ++ + + K
Sbjct: 106 RKPGNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFSEKTS----------TGK 155
Query: 139 DNCSEVFILHQEAHCSSVSSVNKNSMPT 166
+N Q+ +CS VS+VNK +PT
Sbjct: 156 EN--------QDENCSGVSTVNKYPLPT 175
Score = 166 (63.5 bits), Expect = 4.3e-80, Sum P(3) = 4.3e-80
Identities = 34/59 (57%), Positives = 47/59 (79%)
Query: 685 EGLLTIGLGHGK-LKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVEG-ATT 741
EG++ IG+G K LK R+TGFKPYKRCS+E KE+++ N NQ++EK KR+R+EG A+T
Sbjct: 587 EGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST 645
>TAIR|locus:2044345 [details] [associations]
symbol:CCA1 "circadian clock associated 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0010243 "response to
organic nitrogen" evidence=IEP] [GO:0048574 "long-day
photoperiodism, flowering" evidence=IGI;RCA] [GO:0007623 "circadian
rhythm" evidence=IEP;IGI;RCA;IMP;TAS] [GO:0019904 "protein domain
specific binding" evidence=ISS] [GO:0043496 "regulation of protein
homodimerization activity" evidence=IMP] [GO:0009409 "response to
cold" evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042754 "negative regulation of circadian rhythm"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009639 "response to red or far
red light" evidence=RCA] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] [GO:0042752 "regulation of
circadian rhythm" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717 GO:GO:0009737
GO:GO:0005634 GO:GO:0046686 GO:GO:0045892 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733 GO:GO:0009753
GO:GO:0009723 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0043565 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0009751 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739
GO:GO:0010243 GO:GO:0043496 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC005310 GO:GO:0048574
EMBL:U28422 EMBL:U79156 EMBL:AY519511 EMBL:BT001096 EMBL:BT001105
IPI:IPI00522826 IPI:IPI00545715 PIR:T02684 RefSeq:NP_850460.1
RefSeq:NP_850461.1 UniGene:At.10956 ProteinModelPortal:P92973
SMR:P92973 IntAct:P92973 STRING:P92973 PRIDE:P92973
EnsemblPlants:AT2G46830.1 GeneID:819296 KEGG:ath:AT2G46830
GeneFarm:1652 TAIR:At2g46830 eggNOG:NOG310744 HOGENOM:HOG000084594
InParanoid:P92973 KO:K12134 OMA:HPEMANE PhylomeDB:P92973
ProtClustDB:CLSN2918288 GO:GO:0042754 Uniprot:P92973
Length = 608
Score = 293 (108.2 bits), Expect = 8.6e-44, Sum P(3) = 8.6e-44
Identities = 110/341 (32%), Positives = 156/341 (45%)
Query: 404 SSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKT 463
+SPP++ +GLLPLCAP + +T S D A+
Sbjct: 302 NSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKAS-- 359
Query: 464 DKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHE 523
T + +++ + E+SEA +A++S L S+ E+ S K HE
Sbjct: 360 -----TLQHGSVQSREQ--EHSEASKARSS-------LDSEDVENKS-------KPVCHE 398
Query: 524 KNSE--ENELHDSNKTKNRKQVDRSSCGSNTPSSSE-VETDALXXXXXXXXXX---XXID 577
+ S E++ S+ +RKQVDRSSCGSNTPSSS+ VE DA D
Sbjct: 399 QPSATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADASERQEDGTNGEVKETNED 458
Query: 578 PSLPATDPGN-RRSRSSSNITDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQ 636
+ P T N RRSR SSNITD WK VS+ GR+AFQALFSREVLPQSF+ + +++ QQ
Sbjct: 459 TNKPQTSESNARRSRISSNITDPWKSVSDEGRIAFQALFSREVLPQSFTYREEHREEEQQ 518
Query: 637 DNVEXXXXXXXXXXXXSLFDLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGK 696
+ DLN + QE +++T G G + + G
Sbjct: 519 QQEQRYPMA---------LDLNFTAQLTPVDDQEEKRNT--GFLGIGLDASKLMSRGRTG 567
Query: 697 LKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVE 737
K + K + N I++ E+K PKR+R+E
Sbjct: 568 FKPYKRCSMEAKESRI-LNNNPIIHV----EQKDPKRMRLE 603
Score = 214 (80.4 bits), Expect = 8.6e-44, Sum P(3) = 8.6e-44
Identities = 69/181 (38%), Positives = 98/181 (54%)
Query: 27 EHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIXXXXXXXXXXXXXXXXTCT 86
EH+ TK AVQIRSHAQKFFSK+EKEA +KGV +GQA+DI I T +
Sbjct: 51 EHVATKTAVQIRSHAQKFFSKVEKEAEAKGVAMGQALDIAIPPPRPKRKPNNPYPRKTGS 110
Query: 87 NAP-MSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIESQKDNCSEVF 145
MS+ G DGK S+ S + + ++ +P +EK T+ Q+DNCS+ F
Sbjct: 111 GTILMSKTGVNDGK--ESLGSEKVSHPEMANEDRQQSKP--EEK---TL--QEDNCSDCF 161
Query: 146 ILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETR-ESYVTVELKAN 204
HQ + S+ SS+NK+ + T ++ REF+PS +E + R ES + K+
Sbjct: 162 T-HQ--YLSAASSMNKSCIETS----NASTFREFLPSREEGSQNNRVRKESNSDLNAKSL 214
Query: 205 E 205
E
Sbjct: 215 E 215
Score = 128 (50.1 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 61/264 (23%), Positives = 105/264 (39%)
Query: 319 VPKSTHQSFPTFHPPFTQFRHDQD---DYRSFLHISSAFSSLIVSTLLQNPXXXXXXXXX 375
VP + + HPP H DY+SF + I+STLLQ P
Sbjct: 233 VPLGSSITSSLSHPPSEPDSHPHTVAGDYQSF-------PNHIMSTLLQTPALYTAATFA 285
Query: 376 XTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAP 435
+FWP ++S SP P G +SPP++ +GLLPLCAP
Sbjct: 286 SSFWP---PDSSGGSPV-P--G------NSPPNLAAMAAATVAAASAWWAANGLLPLCAP 333
Query: 436 F-------HAPFICPPACA---TAVSSMDTAQVPAAKTDKNDNTPPNPAL--KD------ 477
H P P+C T S++ V + + + ++ + +L +D
Sbjct: 334 LSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSREQEHSEASKARSSLDSEDVENKSK 393
Query: 478 ---H-QPDLE-YSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELH 532
H QP S+A + + + +S + S+ +E A++ +++ E+
Sbjct: 394 PVCHEQPSATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADASERQEDGTNGEVK 453
Query: 533 DSNKTKNRKQVDRSSCGSNTPSSS 556
++N+ N+ Q S+ + SS+
Sbjct: 454 ETNEDTNKPQTSESNARRSRISSN 477
Score = 74 (31.1 bits), Expect = 8.6e-44, Sum P(3) = 8.6e-44
Identities = 29/102 (28%), Positives = 39/102 (38%)
Query: 233 SHEKSVHGEKRDDV-ADALPTAEVQATQNYPRHVNVHILDGSLGTGTQSPSDMPMQESIF 291
S V E D+ A +L Q Q YP H+ V + LG+ S P E
Sbjct: 196 SQNNRVRKESNSDLNAKSLENGNEQGPQTYPMHIPVLV---PLGSSITSSLSHPPSEPDS 252
Query: 292 HPIGEVHGNPNLFTNPAASATTENESNVPKSTHQSFPTFHPP 333
HP V G+ F N S + + +T S +F PP
Sbjct: 253 HP-HTVAGDYQSFPNHIMSTLLQTPALYTAATFAS--SFWPP 291
>TAIR|locus:504955668 [details] [associations]
symbol:AT3G10113 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002686 GO:GO:0006355 GO:GO:0003677 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
UniGene:At.27131 IPI:IPI00534114 RefSeq:NP_683543.1
UniGene:At.53244 ProteinModelPortal:F4J2J6 SMR:F4J2J6
EnsemblPlants:AT3G10113.1 GeneID:820173 KEGG:ath:AT3G10113
PhylomeDB:F4J2J6 Uniprot:F4J2J6
Length = 336
Score = 115 (45.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 26/39 (66%), Positives = 30/39 (76%)
Query: 27 EHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDI 65
EHIGTK AVQIRSHAQKFFSK+ +EA S+ +AI I
Sbjct: 92 EHIGTKTAVQIRSHAQKFFSKMAQEADSRSEGSVKAIVI 130
Score = 59 (25.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 41/161 (25%), Positives = 64/161 (39%)
Query: 590 SRSSSNITDS---WKEVSEVGRLAFQA--LFSREVL--PQSFSPPH----DLKDKMQQDN 638
S +N T S +K+ S++G + LF + VL +S P DLK Q+N
Sbjct: 178 SEDQNNYTTSKQPFKDDSDIGSTPISSITLFGKIVLVAEESHKPSSYNDDDLKQMTCQEN 237
Query: 639 VEXXXXXXXXXXXX--SLFDLNSKTWGSCFGHQE-VEKSTVSGVENNGGEGLLTIGLGHG 695
F S +GS E +EKS ++ + L ++
Sbjct: 238 HYSGMLVDTNLSLGVWETFCTGSNAFGSVTEASENLEKSAEP--ISSSWKRLSSLEKQGS 295
Query: 696 KLKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRV 736
+GF+PYKRC E + L T ++EK +R R+
Sbjct: 296 CNPVNASGFRPYKRCLSEREVTSSL-TLVASDEKKSQRARI 335
>TAIR|locus:2014114 [details] [associations]
symbol:EPR1 "EARLY-PHYTOCHROME-RESPONSIVE1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009651 "response to salt stress" evidence=IEP]
[GO:0009723 "response to ethylene stimulus" evidence=IEP]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=IEP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717 EMBL:CP002684
GO:GO:0046686 GO:GO:0009723 GO:GO:0003677 GO:GO:0007623
GO:GO:0009651 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC013354 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00891668
RefSeq:NP_001117304.1 UniGene:At.27131 ProteinModelPortal:B3H5A8
SMR:B3H5A8 EnsemblPlants:AT1G18330.2 GeneID:838413
KEGG:ath:AT1G18330 TAIR:At1g18330 eggNOG:NOG263004
HOGENOM:HOG000064617 OMA:NSCTSDI PhylomeDB:B3H5A8
ProtClustDB:CLSN2682175 Genevestigator:B3H5A8 Uniprot:B3H5A8
Length = 372
Score = 115 (45.5 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 26/39 (66%), Positives = 30/39 (76%)
Query: 27 EHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDI 65
EHIGTK AVQIRSHAQKFFSK+ +EA S+ +AI I
Sbjct: 103 EHIGTKTAVQIRSHAQKFFSKMAQEADSRSEGSVKAIVI 141
Score = 58 (25.5 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 702 TGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRV 736
+GF+PYKRC E + L T ++EK +R R+
Sbjct: 338 SGFRPYKRCLSEREVTSSL-TLVASDEKKSQRARI 371
Score = 40 (19.1 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 583 TDPGNRRSRSSSNITDSWKEVSEV 606
T+ +S+ I+ SWK +S +
Sbjct: 303 TEASENLEKSAEPISSSWKRLSSL 326
>TAIR|locus:2169135 [details] [associations]
symbol:RVE2 "REVEILLE 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0007623
"circadian rhythm" evidence=IEP;RCA] [GO:0009845 "seed germination"
evidence=IMP] [GO:0009909 "regulation of flower development"
evidence=IMP] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 GO:GO:0009737 EMBL:CP002688 GO:GO:0009733
GO:GO:0009753 GO:GO:0009723 GO:GO:0003677 GO:GO:0007623
GO:GO:0009651 GO:GO:0003700 GO:GO:0003682 GO:GO:0009751
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739 GO:GO:0009845
GO:GO:0009909 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00528444
RefSeq:NP_198542.1 UniGene:At.30502 UniGene:At.68589
ProteinModelPortal:F4K5X6 SMR:F4K5X6 PRIDE:F4K5X6
EnsemblPlants:AT5G37260.1 GeneID:833700 KEGG:ath:AT5G37260
OMA:SSHTEES ArrayExpress:F4K5X6 Uniprot:F4K5X6
Length = 287
Score = 104 (41.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 20/30 (66%), Positives = 25/30 (83%)
Query: 23 WFRAE-HIGTKKAVQIRSHAQKFFSKLEKE 51
W R E H+GTK AVQIRSHAQKFF+K+ ++
Sbjct: 58 WRRIEEHVGTKTAVQIRSHAQKFFTKVARD 87
Score = 67 (28.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 33/133 (24%), Positives = 53/133 (39%)
Query: 435 PFHAPFICPPACATAVSSMDTAQVPAAKTDKN-DNTPPNPALKDHQPDLEYSEALQAQNS 493
P+ + P A M A++ +K ++ DN P L H D S + NS
Sbjct: 109 PYPRKLVIPDA-----KEMVYAELTGSKLIQDEDNRSPTSVLSAHGSDGLGSIGSNSPNS 163
Query: 494 ASKSLTVLTSDSEESASAKLKMELK-------ATDHEKNSEENELHDSNKTKNRKQVDRS 546
+S L+ T +S S A+ K LK D+ + ++ D K K +
Sbjct: 164 SSAELSSHTEESL-SLEAETKQSLKLFGKTFVVGDYNSSMSCDDSEDGKK-KLYSETQSL 221
Query: 547 SCGSNTPSSSEVE 559
C S+T ++E E
Sbjct: 222 QCSSSTSENAETE 234
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.128 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 741 674 0.0010 120 3 11 23 0.47 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 616 (65 KB)
Total size of DFA: 354 KB (2176 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 70.88u 0.11s 70.99t Elapsed: 00:00:03
Total cpu time: 70.88u 0.11s 70.99t Elapsed: 00:00:03
Start: Tue May 21 04:31:09 2013 End: Tue May 21 04:31:12 2013