BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004618
(741 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 347 bits (889), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 322/744 (43%), Positives = 405/744 (54%), Gaps = 156/744 (20%)
Query: 13 LSRLFFLCFTWFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPR 71
L L W R E HIGTK AVQIRSHAQKFF+KLEKEA KG+P+ QA+DI+IPPPR
Sbjct: 36 LEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPR 95
Query: 72 PKRKPRNPYPRKTCTNAPMS-QIG-AKDGKLRSSVSSLRCNQV-LDLEKEPICDRPNGDE 128
PKRKP PYPRK N S Q+ AKD KL SS SS + NQ LDLEK P E
Sbjct: 96 PKRKPNTPYPRKPGNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFS------E 149
Query: 129 KPTYTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVN 188
K + E+Q +NCS VS+VNK +PT K+V
Sbjct: 150 KTSTGKENQDENCS------------GVSTVNKYPLPT-----------------KQVSG 180
Query: 189 QDETRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVAD 248
ET SK ++NA + V + +D D
Sbjct: 181 DIET-----------------------------SKTSTVDNAV----QDVPKKNKD--KD 205
Query: 249 ALPTAEVQATQNYPRHVNVHILDGSLGTGTQS-PSDMPMQESIFHPIGE-VHGNPNLFTN 306
V + QNYP H + I++G++ Q+ PS M Q+ +FHP+ E HG+ NL
Sbjct: 206 GNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQAT 265
Query: 307 PAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNP 366
A++ TT ++HQ+FP H QDDYRSFL ISS FS+LI+STLLQNP
Sbjct: 266 TASATTT--------ASHQAFPACH--------SQDDYRSFLQISSTFSNLIMSTLLQNP 309
Query: 367 AAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAA 426
AAHAAA+FAA+ WPY ++ S DS + SSPPS+ AIAAATVAAATAWWA+
Sbjct: 310 AAHAAATFAASVWPYASVGNSGDS--------STPMSSSPPSITAIAAATVAAATAWWAS 361
Query: 427 HGLLPLCAPFHAPFICPPACATAVSSMDTAQVPA-AKTDKNDNTPPNPALKDHQPDLEYS 485
HGLLP+CAP AP C P AV + PA + D +NT QP + +
Sbjct: 362 HGLLPVCAP--APITCVPFSTVAVPT------PAMTEMDTVENT---------QPFEKQN 404
Query: 486 EALQAQNSASKSLTVLTSDSEESASAKLKMELKATDH--EKNSEENELHDSNKTKNRKQV 543
ALQ QN ASKS + DS+E+ KL + K D E+ +HDSN + + V
Sbjct: 405 TALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLV 464
Query: 544 DRSSCGSNTPSSSEVETDALEKQEKGKEESKEIDPSLP-ATDPGNRRSRSSSN------I 596
DRSSCGSNTPS S+ ETDAL+K EK KE+ KE D + P + NR+ + N
Sbjct: 465 DRSSCGSNTPSGSDAETDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNAT 524
Query: 597 TDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQDNVEDKQNGNKKDGDKSL-F 655
TDSWKEVSE GR+AFQALF+RE LPQSFSPP + +N N+K D S+
Sbjct: 525 TDSWKEVSEEGRIAFQALFARERLPQSFSPP------------QVAENVNRKQSDTSMPL 572
Query: 656 DLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGK-LKARRTGFKPYKRCSVEA 714
N K+ SC Q EG++ IG+G K LK R+TGFKPYKRCS+E
Sbjct: 573 APNFKSQDSCAADQ---------------EGVVMIGVGTCKSLKTRQTGFKPYKRCSMEV 617
Query: 715 KENRILNTGNQAEEKCPKRIRVEG 738
KE+++ N NQ++EK KR+R+EG
Sbjct: 618 KESQVGNINNQSDEKVCKRLRLEG 641
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 256 bits (654), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 270/731 (36%), Positives = 358/731 (48%), Gaps = 198/731 (27%)
Query: 27 EHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYPRKTCT 86
EH+ TK AVQIRSHAQKFFSK+EKEA +KGV +GQA+DI IPPPRPKRKP NPYPRKT +
Sbjct: 51 EHVATKTAVQIRSHAQKFFSKVEKEAEAKGVAMGQALDIAIPPPRPKRKPNNPYPRKTGS 110
Query: 87 NAP-MSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIES--QKDNCSE 143
MS+ G DGK + L EK + N D + + E Q+DNCS+
Sbjct: 111 GTILMSKTGVNDGK-----------ESLGSEKVSHPEMANEDRQQSKPEEKTLQEDNCSD 159
Query: 144 VFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVELKA 203
F HQ + S+ SS+NK+ + T ++ REF+PS +E + R+
Sbjct: 160 CFT-HQ--YLSAASSMNKSCIET----SNASTFREFLPSREEGSQNNRVRKE-------- 204
Query: 204 NEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPR 263
S+ LN A +L Q Q YP
Sbjct: 205 -----------------SNSDLN--------------------AKSLENGNEQGPQTYPM 227
Query: 264 HVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKST 323
H+ V + GS + S+ HP E +P+
Sbjct: 228 HIPVLVPLGS-----------SITSSLSHPPSEPDSHPHTVAG----------------D 260
Query: 324 HQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTN 383
+QSFP I+STLLQ PA + AA+FA++FWP
Sbjct: 261 YQSFPNH---------------------------IMSTLLQTPALYTAATFASSFWP--- 290
Query: 384 METSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLLPLCAPF------- 436
++S SP +SPP++AA+AAATVAAA+AWWAA+GLLPLCAP
Sbjct: 291 PDSSGGSPV---------PGNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTS 341
Query: 437 HAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASK 496
H P P+C + T Q + ++ + E+SEA +A++S
Sbjct: 342 HPPSTFGPSCDVEYTKASTLQHGSVQSREQ----------------EHSEASKARSSL-- 383
Query: 497 SLTVLTSDSEESASAKLKMELKATDHEKNSE--ENELHDSNKTKNRKQVDRSSCGSNTPS 554
DSE+ ++ + K HE+ S E++ S+ +RKQVDRSSCGSNTPS
Sbjct: 384 -------DSED-----VENKSKPVCHEQPSATPESDAKGSDGAGDRKQVDRSSCGSNTPS 431
Query: 555 SSE-VETDALEKQEKGKE-ESKEI--DPSLPATDPGN-RRSRSSSNITDSWKEVSEVGRL 609
SS+ VE DA E+QE G E KE D + P T N RRSR SSNITD WK VS+ GR+
Sbjct: 432 SSDDVEADASERQEDGTNGEVKETNEDTNKPQTSESNARRSRISSNITDPWKSVSDEGRI 491
Query: 610 AFQALFSREVLPQSFSPPHDLKDKMQQDNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGHQ 669
AFQALFSREVLPQSF+ ++ +++ ++ DLN + Q
Sbjct: 492 AFQALFSREVLPQSFT---------YREEHREEEQQQQEQRYPMALDLNFTAQLTPVDDQ 542
Query: 670 EVEKSTVSGVENNGGEGLLTIGLGHGKLKAR-RTGFKPYKRCSVEAKENRILNTGN--QA 726
E +++T G L IGL KL +R RTGFKPYKRCS+EAKE+RILN
Sbjct: 543 EEKRNT----------GFLGIGLDASKLMSRGRTGFKPYKRCSMEAKESRILNNNPIIHV 592
Query: 727 EEKCPKRIRVE 737
E+K PKR+R+E
Sbjct: 593 EQKDPKRMRLE 603
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 11/62 (17%)
Query: 23 WFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYP 81
W + E +G+K +QIRSHAQK+F K++K + IPPPRPKRK PYP
Sbjct: 63 WKKIESFVGSKTVIQIRSHAQKYFIKVQKNNTGE----------RIPPPRPKRKSIQPYP 112
Query: 82 RK 83
+K
Sbjct: 113 QK 114
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 10/55 (18%)
Query: 29 IGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYPRK 83
+G+K +QIRSHAQK+F K++K + +PPPRPKRK +PYP+K
Sbjct: 90 VGSKTVIQIRSHAQKYFLKVQKNGTKE----------HLPPPRPKRKANHPYPQK 134
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 15 RLFFLCFTWFRA------EHIGTKKAVQIRSHAQKFFSKLEKEAL 53
RLF + + EH+ TK +Q+RSHAQKF KLEK +
Sbjct: 159 RLFVEAYKLYDKDNKKIQEHVKTKTILQVRSHAQKFALKLEKNGI 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,030,187
Number of Sequences: 539616
Number of extensions: 12259548
Number of successful extensions: 37539
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 492
Number of HSP's that attempted gapping in prelim test: 35454
Number of HSP's gapped (non-prelim): 1782
length of query: 741
length of database: 191,569,459
effective HSP length: 125
effective length of query: 616
effective length of database: 124,117,459
effective search space: 76456354744
effective search space used: 76456354744
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)